Citrus Sinensis ID: 047844

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260----
Protein Sequence
MNSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSSRFLPSPRSCLIPNSTTTSLFALIPSHTRLSHPMNRSVNISWVLK
Secondary Structure (PSIPRED)
ccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHccccccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHccHHHHHHHHHHcccccHHHHHHcHHHHHHHHHHccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccccHHHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHcccHHHHHHHHHccccHHcccccccccHHHHHHHHccHHHHHHHHHccccccccHHHccccccccccccccccccccHHHHHHHcccHHHHHHHHHccccccHHcccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccccHHccccccHHHHHccccccccccccccccccccHHHHHHHHcccccEEEEEEEcc
Coil and Loop (DISEMBL)
MNSDLYEAAAkgeiepfnqLAIDRQLGslvthkkntVLHVNIIASYtqnkegesvSTKFVERIIEMCPSLLLqvnakgdaplHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLgadpafpysangsgetPLYLAAARAHKEISAEIlqkcpspahegpngktALHAAVCSrscaasrchklhrssrflpsprsclipnstttslfalipshtrlshpmnrsvniswvlk
Flexible Loop (DISEMBL)
MNSDLYEAAAkgeiepfnQLAIDRQLGSLVTHKKNTVLHVNIiasytqnkegesVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKlhrssrflpsprscLIPNSTTTSLFALIPshtrlshpmnrsvniswvlk
Low Complexity Region (SEG)
MNSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHaavcsrscaasrcHKLHRSSRFLPSPRSCLIPNSTTTSLFALIPSHTRLSHPMNRSVNISWVLK
Disordered region (IsUnstruct)
*************IEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIA*************************************GSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEI*****************LHAAVCSRSCAASRCHKLHR***FL***RSCLIPNSTTTSLFALIPSHT***********I*****
Disordered Region (DISOPRED)
MNSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSSRFLPSPRSCLIPNSTTTSLFALIPSHTRLSHPMNRSV*******
Disordered Region (DISEMBL)
********AAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQ********TKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQE**********STARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSSRFLPSPRSCLIPNSTTTSLFALIPSHTRLSHPMNRSVNISWVLK
Disordered Region (DISPRO)
*NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSSRFLPSPRSCLIPNSTTTSLFALIPSHTRLSHPMNRSVNISWVLK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSSRFLPSPRSCLIPNSTTTSLFALIPSHTRLSHPMNRSVNISWVLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	264	2.2.26 [Sep-21-2011]
Q96NW4	1050	Ankyrin repeat domain-con	yes	no	0.568	0.142	0.317	7e-09
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.446	0.225	0.328	2e-08
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	no	0.420	0.056	0.341	4e-08
Q5REW9	1050	Ankyrin repeat domain-con	yes	no	0.568	0.142	0.306	4e-08
Q12955	4377	Ankyrin-3 OS=Homo sapiens	no	no	0.420	0.025	0.333	9e-08
Q9ET47	871	Espin OS=Mus musculus GN=	no	no	0.397	0.120	0.319	1e-07
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.412	0.204	0.32	1e-07
Q63618	837	Espin OS=Rattus norvegicu	yes	no	0.401	0.126	0.317	2e-07
Q3UMR0	1048	Ankyrin repeat domain-con	no	no	0.435	0.109	0.345	3e-07
Q01484	3957	Ankyrin-2 OS=Homo sapiens	no	no	0.435	0.029	0.364	3e-07

>sp|Q96NW4|ANR27_HUMAN Ankyrin repeat domain-containing protein 27 OS=Homo sapiens GN=ANKRD27 PE=1 SV=2

 Score = 61.2 bits (147), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 76/173 (43%), Gaps = 23/173 (13%)

Query: 78  GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQ 137
           G +PLHVAA +G A ++  L++            G  + AR      N ++   LH A Q
Sbjct: 744 GSSPLHVAALHGRADLIPLLLK-----------HGANAGAR------NADQAVPLHLACQ 786

Query: 138 SGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKT 197
            G   VVK LL ++ A P   + SG TPL  A +  H E+ A +LQ   S       G T
Sbjct: 787 QGHFQVVKCLLDSN-AKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNT 845

Query: 198 ALHAAVCSRSCAASRCHKLHRSSRFLPSPR-----SCLIPNSTTTSLFALIPS 245
           ALH AV  +         LH +S  + + R      C   NS    L  ++PS
Sbjct: 846 ALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPS 898

May be a Rab21 guanine exchange factor and regulate endosome dynamics.
Homo sapiens (taxid: 9606)

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 16/134 (11%)

Query: 70  LLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEED 129
           LL + N  G+  L+VAA YG+  +V+ L+    + SD  +            G K     
Sbjct: 48  LLAEQNQSGETALYVAAEYGYTDMVKILM----KHSDSVLA-----------GTKAKNGF 92

Query: 130 TALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQK-CPSP 188
            A H A ++G+L V+ +L+ A+P   ++ + S  T L+ AA++ H EI   +L K     
Sbjct: 93  DAFHIAAKNGNLQVLDVLIEANPELSFTFDSSKTTALHTAASQGHGEIVCFLLDKGVDLA 152

Query: 189 AHEGPNGKTALHAA 202
           A    NGKTALH+A
Sbjct: 153 AIARSNGKTALHSA 166

Arabidopsis thaliana (taxid: 3702)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 18/129 (13%)

Query: 74  VNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALH 133
            N +G+  LH+AAR G A VV  L++   Q         VE+ A+        ++ T LH
Sbjct: 445 TNVRGETALHMAARSGQAEVVRYLVQDGAQ---------VEAKAK--------DDQTPLH 487

Query: 134 EAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGP 193
            + + G  D+V+ LL    A P +A  SG TPL+LAA   H++++A +L    S +    
Sbjct: 488 ISARLGKADIVQQLL-QQGASPNAATTSGYTPLHLAAREGHEDVAAFLLDHGASLSITTK 546

Query: 194 NGKTALHAA 202
            G T LH A
Sbjct: 547 KGFTPLHVA 555

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|Q5REW9|ANR27_PONAB Ankyrin repeat domain-containing protein 27 OS=Pongo abelii GN=ANKRD27 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 76/173 (43%), Gaps = 23/173 (13%)

Query: 78  GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQ 137
           G +PL+VAA +G A ++  L++            G  + AR      N ++   LH A Q
Sbjct: 744 GSSPLYVAALHGRADLIPLLLK-----------HGANAGAR------NADQAVPLHLACQ 786

Query: 138 SGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKT 197
            G   VVK LL ++ A P   + SG TPL  A +  H E+ A +LQ   +       G T
Sbjct: 787 QGHFQVVKCLLDSN-AKPNKKDLSGNTPLIYACSGGHHEVVALLLQHGAAINTSNNKGNT 845

Query: 198 ALHAAVCSRSCAASRCHKLHRSSRFLPSPR-----SCLIPNSTTTSLFALIPS 245
           ALH AV  +         LH +S  + + R      C   NS    L  ++PS
Sbjct: 846 ALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPS 898

May be a Rab21 guanine exchange factor and regulate endosome dynamics.

Pongo abelii (taxid: 9601)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score = 57.8 bits (138), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 18/129 (13%)

Query: 74  VNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALH 133
            N +G+  LH+AAR G A VV  L++   Q         VE+ A+        ++ T LH
Sbjct: 462 TNVRGETALHMAARSGQAEVVRYLVQDGAQ---------VEAKAK--------DDQTPLH 504

Query: 134 EAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGP 193
            + + G  D+V+ LL    A P +A  SG TPL+L+A   H++++A +L    S +    
Sbjct: 505 ISARLGKADIVQQLLQQG-ASPNAATTSGYTPLHLSAREGHEDVAAFLLDHGASLSITTK 563

Query: 194 NGKTALHAA 202
            G T LH A
Sbjct: 564 KGFTPLHVA 572

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|Q9ET47|ESPN_MOUSE Espin OS=Mus musculus GN=Espn PE=1 SV=2

 Score = 57.0 bits (136), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 17/122 (13%)

Query: 82  LHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSL 141
           LH+AAR+GH  VV+ L+           + G  S       +  D     +H A   G L
Sbjct: 108 LHLAARFGHPDVVKWLL----------YQGGANSA------ITTDTGALPIHYAAAKGDL 151

Query: 142 DVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAH-EGPNGKTALH 200
             +K+L+G  P    +   +G TPLYLA    H E++  ++Q+C +  H    +G T LH
Sbjct: 152 PSLKLLVGHYPEGVNAQTNNGATPLYLACQEGHLEVTKYLVQECSADPHLRAQDGMTPLH 211

Query: 201 AA 202
           AA
Sbjct: 212 AA 213

Multifunctional actin-bundling protein. Plays a major role in regulating the organization, dimensions, dynamics and signaling capacities of the actin filament-rich, microvillus-type specializations that mediate sensory transduction in variouS mechanosensory and chemosensory cells.

Mus musculus (taxid: 10090)

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score = 57.0 bits (136), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 16/125 (12%)

Query: 58  KFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTA 117
           + V  ++++ PS  + V   G   LH A RYG   +V+ALIE      D  I        
Sbjct: 142 EIVNAMLDVDPSCAMIVRKNGKTSLHTAGRYGLLRIVKALIE-----KDAAI-------- 188

Query: 118 RHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEI 177
              +G+K+ +  TALH AV+  SL+VV+ +L AD       +  G T L++A  +A  +I
Sbjct: 189 ---VGVKDKKGQTALHMAVKGRSLEVVEEILQADYTILNERDRKGNTALHIATRKARPQI 245

Query: 178 SAEIL 182
           ++ +L
Sbjct: 246 TSLLL 250

Arabidopsis thaliana (taxid: 3702)

>sp|Q63618|ESPN_RAT Espin OS=Rattus norvegicus GN=Espn PE=1 SV=2

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 17/123 (13%)

Query: 82  LHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSL 141
           LH+AAR+GH  VV  L+           + G  S       +  D     +H A   G L
Sbjct: 108 LHLAARFGHPDVVNWLL----------YQGGANSA------ITTDTGALPIHYAAAKGDL 151

Query: 142 DVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAH-EGPNGKTALH 200
             +K+L+G  P    +   +G TPLYLA    H E++  ++Q+C +  H    +G T LH
Sbjct: 152 PSMKLLVGHYPEGVNAQTNNGATPLYLACQEGHLEVTKYLVQECSADPHLRAQDGMTPLH 211

Query: 201 AAV 203
           AA 
Sbjct: 212 AAA 214

Multifunctional actin-bundling protein. Plays a major role in regulating the organization, dimensions, dynamics and signaling capacities of the actin filament-rich, microvillus-type specializations that mediate sensory transduction in variouS mechanosensory and chemosensory cells.

Rattus norvegicus (taxid: 10116)

>sp|Q3UMR0|ANR27_MOUSE Ankyrin repeat domain-containing protein 27 OS=Mus musculus GN=Ankrd27 PE=1 SV=2

 Score = 56.2 bits (134), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 60/133 (45%), Gaps = 18/133 (13%)

Query: 74  VNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALH 133
            N  G +PLH+AA +G   +V  L++            G  S AR      N  +   LH
Sbjct: 739 TNQDGFSPLHMAALHGRTDLVPLLLK-----------HGAYSGAR------NTSQAVPLH 781

Query: 134 EAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGP 193
            A Q G   V K LL ++ A P   + SG TPL  A +  H E++A +LQ   S      
Sbjct: 782 LACQQGHFQVAKCLLDSN-AKPNKKDLSGNTPLICACSAGHHEVAALLLQHGASINACNN 840

Query: 194 NGKTALHAAVCSR 206
            G TALH AV  R
Sbjct: 841 KGNTALHEAVMGR 853

May be a Rab21 guanine exchange factor and regulate endosome dynamics.

Mus musculus (taxid: 10090)

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score = 56.2 bits (134), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/140 (36%), Positives = 66/140 (47%), Gaps = 25/140 (17%)

Query: 70  LLLQVNAKGDA-------PLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLG 122
           LLLQ  A  DA       PLH++AR G   V   L+E                 A H L 
Sbjct: 515 LLLQHMAHPDAATTNGYTPLHISAREGQVDVASVLLEAG---------------AAHSLA 559

Query: 123 MKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEIL 182
            K     T LH A + GSLDV K+LL    A   SA  +G TPL++AA   +++++  +L
Sbjct: 560 TKKGF--TPLHVAAKYGSLDVAKLLLQRRAAA-DSAGKNGLTPLHVAAHYDNQKVALLLL 616

Query: 183 QKCPSPAHEGPNGKTALHAA 202
           +K  SP     NG T LH A
Sbjct: 617 EKGASPHATAKNGYTPLHIA 636

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	264
255585399	575	ankyrin repeat-containing protein, putat	0.738	0.339	0.475	2e-41
224127089	217	predicted protein [Populus trichocarpa]	0.784	0.953	0.472	1e-40
224127093	281	predicted protein [Populus trichocarpa]	0.723	0.679	0.497	2e-39
255551947	582	ankyrin repeat-containing protein, putat	0.734	0.333	0.453	4e-39
356510752	629	PREDICTED: ankyrin-2-like [Glycine max]	0.787	0.330	0.419	7e-39
224145572	395	predicted protein [Populus trichocarpa]	0.734	0.491	0.469	2e-38
224127098	399	predicted protein [Populus trichocarpa]	0.768	0.508	0.467	3e-38
224127104	405	predicted protein [Populus trichocarpa]	0.768	0.501	0.467	3e-38
224127081	227	predicted protein [Populus trichocarpa]	0.772	0.898	0.465	8e-38
147772498	708	hypothetical protein VITISV_032148 [Viti	0.731	0.272	0.447	8e-38

>gi|255585399|ref|XP_002533395.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223526769|gb|EEF28995.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 98/206 (47%), Positives = 136/206 (66%), Gaps = 11/206 (5%)

Query: 1   MNSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFV 60
           M+ DLY+AA  G+I+PF   A    L  LVT  K+T+LH+N+ AS ++       ST FV
Sbjct: 27  MSLDLYKAAEDGKIDPFKNFA--GPLDLLVTPIKDTILHLNL-ASPSER------STSFV 77

Query: 61  ERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHM 120
           +  ++MCP +LLQ+NA GD  LH+AARYGH  +V+ LIE  + +  Q++ES  E+  R M
Sbjct: 78  KEALDMCPQILLQINADGDTLLHIAARYGHLDIVKLLIEHTRAQH-QDLESAGEAV-RQM 135

Query: 121 LGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAE 180
           L M N  ++TALHEA ++   D+V++L+  DP F +S+N  GETPLYLA+ R H E+   
Sbjct: 136 LRMTNKSKETALHEAARNDHPDLVELLIEQDPDFVHSSNDFGETPLYLASERGHLEVVVI 195

Query: 181 ILQKCPSPAHEGPNGKTALHAAVCSR 206
           +L+ C S A+ GPNGKTALHAA   R
Sbjct: 196 MLKACTSLAYGGPNGKTALHAAAMHR 221

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127089|ref|XP_002329390.1| predicted protein [Populus trichocarpa] gi|222870440|gb|EEF07571.1| predicted protein [Populus trichocarpa]

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 104/220 (47%), Positives = 135/220 (61%), Gaps = 13/220 (5%)

Query: 1   MNSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFV 60
           M+  L++AA  G I PF       +L  L+T  +NT+LHV     Y  N+  E  ST FV
Sbjct: 5   MDPLLFKAAEAGNIGPFENYQT--RLNQLLTPDENTILHV-----YLGNQSREPESTDFV 57

Query: 61  ERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHM 120
           + I+EMCP LLLQ N KG+ PLH+AARYGH+ VV+ LI+ AK     + ESG+ + A+ M
Sbjct: 58  DIILEMCPPLLLQANEKGEIPLHLAARYGHSNVVKVLIDCAKALP-TDPESGL-TKAQKM 115

Query: 121 LGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAA----RAHKE 176
           L M N+E+DTALHEA ++    +V+IL   DP F YSAN  GETPLY+AAA    R  ++
Sbjct: 116 LRMANEEQDTALHEAARNRRSHLVEILTKEDPEFSYSANVHGETPLYIAAASSWGREREK 175

Query: 177 ISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKL 216
           +  EIL  C S  + GPNG+TALHAA   R       H L
Sbjct: 176 VIDEILTNCISVDYGGPNGRTALHAASRVRDDGGDISHNL 215

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127093|ref|XP_002329392.1| predicted protein [Populus trichocarpa] gi|222870442|gb|EEF07573.1| predicted protein [Populus trichocarpa]

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 103/207 (49%), Positives = 132/207 (63%), Gaps = 16/207 (7%)

Query: 1   MNSDLYEAAAKGEIEPFN--QLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTK 58
           M+  L++AA  G+I PF   Q  +D+    L+T  +NT+LHV     Y  N+  E   T 
Sbjct: 5   MDPVLFKAAEAGDIGPFENYQTCLDQ----LLTPDENTILHV-----YLGNQSREPEFTD 55

Query: 59  FVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTAR 118
           FV++I+EMCP LLLQ N KG+ PLH+AARYGH+ VV  LIE A +    + ESGV S A+
Sbjct: 56  FVDKILEMCPPLLLQANKKGEIPLHLAARYGHSNVVGVLIERA-EALPTDPESGV-SEAK 113

Query: 119 HMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKE-- 176
            ML M NDE+DTALHEA ++    VV+IL   DP F YSAN  GETPLY+AA+   +E  
Sbjct: 114 KMLRMTNDEQDTALHEAARNMRSHVVEILTEEDPEFSYSANVHGETPLYIAASSWGQEQE 173

Query: 177 -ISAEILQKCPSPAHEGPNGKTALHAA 202
            +  EIL  C S  + GPNG+T LHAA
Sbjct: 174 KVIDEILANCISVDYGGPNGRTVLHAA 200

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551947|ref|XP_002517018.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223543653|gb|EEF45181.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 93/205 (45%), Positives = 132/205 (64%), Gaps = 11/205 (5%)

Query: 1   MNSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFV 60
           M+++LY+AA +  I    + A D  L   VT KKNT+LH+++    + NK     S  FV
Sbjct: 51  MDAELYKAAVEENINSLKKYAKDLDLQ--VTPKKNTILHIHL---NSPNKR----SVDFV 101

Query: 61  ERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHM 120
           +  +++CPSLL + N+ GDAPLH+AARYGH  +V+ L+E AK + ++++E+G     + M
Sbjct: 102 KEALQLCPSLLWKNNSNGDAPLHIAARYGHIDIVKLLLEQAKAQ-NEDLETG-RGAMKQM 159

Query: 121 LGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAE 180
             M+N+++D ALHEA ++  L VV++L   DP F Y AN   ETPLYLAAAR +  +  E
Sbjct: 160 WQMQNEKKDMALHEAARNNHLSVVRLLTRLDPHFLYPANDYEETPLYLAAARGYLYVVIE 219

Query: 181 ILQKCPSPAHEGPNGKTALHAAVCS 205
           IL  C S A+ GP GKTALH AV S
Sbjct: 220 ILNTCKSVAYGGPKGKTALHGAVLS 244

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510752|ref|XP_003524098.1| PREDICTED: ankyrin-2-like [Glycine max]

 Score =  166 bits (421), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 89/212 (41%), Positives = 138/212 (65%), Gaps = 4/212 (1%)

Query: 1   MNSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFV 60
           ++  LY AA +G  + F  +     L +L+T  KNT+LH+++ ++ +++ +    S +FV
Sbjct: 42  IDGALYFAAVEGNFQEFINI---HNLENLLTPNKNTILHIHLTSTTSKSGKTTPASAQFV 98

Query: 61  ERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHM 120
            +I+  C  L+L  NAKG+  LHVAARYGH+ + + L+E AK +   +IE+GV +  +  
Sbjct: 99  TQILVKCGRLVLLPNAKGETLLHVAARYGHSNIAKLLLEHAKAKISPDIENGVGADQK-F 157

Query: 121 LGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAE 180
           +   NDE DTALHEAV+   ++VVK LL  DP + Y AN + ETPLYLA+ R + ++  E
Sbjct: 158 IRATNDELDTALHEAVRYDHIEVVKTLLEMDPDYSYYANNAKETPLYLASERQNLQVVRE 217

Query: 181 ILQKCPSPAHEGPNGKTALHAAVCSRSCAASR 212
           IL+K  SP+++GPN +TALHAAV ++  A +R
Sbjct: 218 ILKKVKSPSYDGPNNQTALHAAVINQDIAMAR 249

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145572|ref|XP_002325691.1| predicted protein [Populus trichocarpa] gi|222862566|gb|EEF00073.1| predicted protein [Populus trichocarpa]

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 100/213 (46%), Positives = 126/213 (59%), Gaps = 19/213 (8%)

Query: 1   MNSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFV 60
           M   LY+AA  G I PF    +   L  L+T KKNT+LHV     Y +N+   S ST FV
Sbjct: 1   MEPKLYKAAEAGNINPFKD-RLPTSLNELLTPKKNTILHV-----YLENQRKGSKSTDFV 54

Query: 61  ERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHM 120
            +II+MCP LLLQ N KG+ PLH AARYG + VV  LI+ AK     ++ESGV + A+ M
Sbjct: 55  GQIIDMCPPLLLQANKKGEIPLHFAARYGRSNVVRVLIDRAKARP-TDLESGV-TEAKKM 112

Query: 121 LGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAA---------- 170
           L M N+E+DTALH A ++    VV+IL   DP F YS N  GETPLY+AA          
Sbjct: 113 LRMTNEEKDTALHVAARNIQAQVVEILTKEDPEFSYSTNVHGETPLYIAANLRFNWRFKR 172

Query: 171 -ARAHKEISAEILQKCPSPAHEGPNGKTALHAA 202
                K++  EIL  C S  + G +G+TALHAA
Sbjct: 173 HEENRKKVINEILSNCKSVEYCGSHGRTALHAA 205

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127098|ref|XP_002329394.1| predicted protein [Populus trichocarpa] gi|222870444|gb|EEF07575.1| predicted protein [Populus trichocarpa]

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 102/218 (46%), Positives = 135/218 (61%), Gaps = 15/218 (6%)

Query: 1   MNSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFV 60
           M+  L++AAA+G+I+PF +      L  L+T  +NT+LHV     Y  N+  E   T FV
Sbjct: 7   MDPVLFKAAAEGDIDPFEKYQT--CLDQLLTPDENTILHV-----YLGNQSREPELTDFV 59

Query: 61  ERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHM 120
             I+EMCP LL Q N KG+ PLH+AA YGH+ VV+ LI+ AK     + ESGV + A+ M
Sbjct: 60  VIILEMCPPLLFQANKKGEIPLHLAAAYGHSNVVKVLIDRAKALP-TDSESGV-TEAKKM 117

Query: 121 LGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAA---RAHKE- 176
           L M N+E+DTALHEA +     VV+IL   DP FPYSAN  GETPLY+AA+   R  +E 
Sbjct: 118 LRMTNEEQDTALHEAARHRRSHVVEILTKEDPEFPYSANVHGETPLYIAASIITRWREEG 177

Query: 177 --ISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASR 212
             +   IL  C S  + GPNG+TAL+AA+  R    +R
Sbjct: 178 GKVVDGILGNCISVDYGGPNGRTALNAAIWVRDDETAR 215

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127104|ref|XP_002329397.1| predicted protein [Populus trichocarpa] gi|222870447|gb|EEF07578.1| predicted protein [Populus trichocarpa]

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 102/218 (46%), Positives = 135/218 (61%), Gaps = 15/218 (6%)

Query: 1   MNSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFV 60
           M+  L++AAA+G+I+PF +      L  L+T  +NT+LHV     Y  N+  E   T FV
Sbjct: 13  MDPVLFKAAAEGDIDPFEKYQT--CLDQLLTPDENTILHV-----YLGNQSREPELTDFV 65

Query: 61  ERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHM 120
             I+EMCP LL Q N KG+ PLH+AA YGH+ VV+ LI+ AK     + ESGV + A+ M
Sbjct: 66  VIILEMCPPLLFQANKKGEIPLHLAAAYGHSNVVKVLIDRAKALP-TDSESGV-TEAKKM 123

Query: 121 LGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAA---RAHKE- 176
           L M N+E+DTALHEA +     VV+IL   DP FPYSAN  GETPLY+AA+   R  +E 
Sbjct: 124 LRMTNEEQDTALHEAARHRRSHVVEILTKEDPEFPYSANVHGETPLYIAASIITRWREER 183

Query: 177 --ISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASR 212
             +   IL  C S  + GPNG+TAL+AA+  R    +R
Sbjct: 184 GKVVDGILGNCISVDYGGPNGRTALNAAIWVRDDETAR 221

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127081|ref|XP_002329387.1| predicted protein [Populus trichocarpa] gi|222870437|gb|EEF07568.1| predicted protein [Populus trichocarpa]

 Score =  163 bits (412), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 102/219 (46%), Positives = 134/219 (61%), Gaps = 15/219 (6%)

Query: 1   MNSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFV 60
           M+  L++AAA+G+I+PF +      L  L+T  +NT+LHV     Y  N+  E   T FV
Sbjct: 13  MDPVLFKAAAEGDIDPFEKYQT--CLDQLLTPDENTILHV-----YLGNQSREPELTDFV 65

Query: 61  ERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHM 120
             I+EMCP LL Q N KG+ PLH+AA YGH+ VV+ LI+ AK     + ESGV + A+ M
Sbjct: 66  VIILEMCPPLLFQANKKGEIPLHLAAAYGHSNVVKVLIDRAKALP-TDSESGV-TEAKKM 123

Query: 121 LGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAA---RAHKE- 176
           L M N+E+DTALHEA +     VV+IL   DP FPYSAN  GETPLY+AA+   R  +E 
Sbjct: 124 LRMTNEEQDTALHEAARHRRSHVVEILTKEDPEFPYSANVHGETPLYIAASIITRWREER 183

Query: 177 --ISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRC 213
             +   IL  C S  + GPNG+TAL+AA+  R      C
Sbjct: 184 GKVVDGILGNCISVDYGGPNGRTALNAAIRVRDDGRILC 222

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147772498|emb|CAN60780.1| hypothetical protein VITISV_032148 [Vitis vinifera]

 Score =  163 bits (412), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 94/210 (44%), Positives = 130/210 (61%), Gaps = 17/210 (8%)

Query: 1   MNSDLYEAAAKGEIEPF-NQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKF 59
           M+ ++YEAA +G+++   N + +DR+L    T  KNTVLH++I         G     + 
Sbjct: 133 MSRNVYEAAVEGKMDFLQNIVHLDREL----TPNKNTVLHIHI--------RGGQAKKEH 180

Query: 60  VERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAK--QESDQEIESGVESTA 117
           V  ++  CPSLL + N K + PLH+AAR G   +V AL++  K    +D ++ESG   + 
Sbjct: 181 VIAMVRQCPSLLQKTNNKDETPLHMAAREGLIQIVGALVDQVKAPHANDADLESGRTLSV 240

Query: 118 RHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEI 177
           R M+GM+N EEDTALHEAV+   L+VV  L+ ADP F Y  N +GETPLY+A  R   E+
Sbjct: 241 REMIGMRNKEEDTALHEAVRYRRLEVVNSLIDADPEFEYCRNRAGETPLYMAVKRGFDEL 300

Query: 178 SAEILQKCPSPAH-EGPNGKTALHAA-VCS 205
              IL+ C SPAH +GPNG TALH A +CS
Sbjct: 301 VDRILRTCRSPAHYQGPNGLTALHQAIICS 330

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	264
TAIR|locus:2138391	572	AT4G05040 "AT4G05040" [Arabido	0.689	0.318	0.282	1.5e-12
TAIR|locus:2128771	641	AT4G03450 "AT4G03450" [Arabido	0.416	0.171	0.375	4.9e-11
TAIR|locus:2128781	677	AT4G03460 "AT4G03460" [Arabido	0.534	0.208	0.314	9.9e-11
UNIPROTKB|F1N642	1048	ANKRD27 "Uncharacterized prote	0.469	0.118	0.315	4.1e-10
UNIPROTKB|F1RNY3	1056	ANKRD27 "Uncharacterized prote	0.469	0.117	0.315	4.2e-10
TAIR|locus:2170081	535	AT5G50140 "AT5G50140" [Arabido	0.454	0.224	0.336	6.1e-10
UNIPROTKB|Q96NW4	1050	ANKRD27 "Ankyrin repeat domain	0.465	0.117	0.317	2.9e-09
TAIR|locus:2129690	670	ACD6 "AT4G14400" [Arabidopsis	0.613	0.241	0.305	5e-09
ZFIN|ZDB-GENE-040426-2042	835	ripk4 "receptor-interacting se	0.462	0.146	0.371	6.8e-09
TAIR|locus:2020833	616	AT1G03670 "AT1G03670" [Arabido	0.575	0.246	0.270	1e-08

TAIR|locus:2138391 AT4G05040 "AT4G05040" [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 55/195 (28%), Positives = 96/195 (49%)

Query:     1 MNSDLYEAAAKGEIEPFNQL-AIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKF 59
             MN++++   + G+ E    L  +   +  L + + ++VLH   +A+   + E        
Sbjct:    81 MNTEVFSGLSDGDKECLEMLKGVGTPMACLKSDRGDSVLH---LAARWGHLE-------L 130

Query:    60 VERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARH 119
             V+ II  CP L+L++N K   PLHVAA  GH+A+VEAL+      SD+  E   E    +
Sbjct:   131 VKNIISECPCLVLELNFKDQLPLHVAAHAGHSAIVEALVASVTFFSDRLAEEDRERLNPY 190

Query:   120 MLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISA 179
             +L  ++   +TALH A++   +++   L+  +    +  N  G + LY+A       +  
Sbjct:   191 VL--RDKYGNTALHLAIEGRYMEMAASLVNENQNASFLENNEGISSLYMAVEAGDVTLVK 248

Query:   180 EILQKCPSPAHEGPN 194
             EIL+   +   EG N
Sbjct:   249 EILKTAGNNDLEGRN 263

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128771 AT4G03450 "AT4G03450" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 4.9e-11, P = 4.9e-11
 Identities = 42/112 (37%), Positives = 61/112 (54%)

Query:    58 KFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTA 117
             + V+RI+  CP LLL+ N+K   PLH AA  G  AVVEA +    + SD   E   E   
Sbjct:    85 ELVKRIVSECPCLLLETNSKDQIPLHAAAAAGRLAVVEAFVARVNEISDGLSEEERERV- 143

Query:   118 RHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLA 169
              ++  MK+ + +TALH A++ G L     L+ A+    + AN  G +PL+ A
Sbjct:   144 -NLYAMKDIDGNTALHLALKGGHLKTAACLVKANHLASFLANNHGVSPLFTA 194

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2128781 AT4G03460 "AT4G03460" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 9.9e-11, P = 9.9e-11
 Identities = 49/156 (31%), Positives = 75/156 (48%)

Query:    28 SLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAAR 87
             S V    NT+LH+   A +T            V  I+   P LL++ N+ G+  LHVAA 
Sbjct:   125 SSVNDHGNTMLHLAAAAGHTD----------LVCYILNAYPGLLMKSNSMGEVALHVAAG 174

Query:    88 YGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKIL 147
              GH AVVEAL+   K     +I       A+ +   K+  +D ALH +++   L V   L
Sbjct:   175 AGHLAVVEALVSFIK-----DISCNKPGVAKKIYFAKDRHQDNALHVSLKRKHLKVASCL 229

Query:   148 LGADPAFPYSANGSGETPLYLAAARAHKEISAEILQ 183
             + A+ +  + AN  G +PLYLA      +++  + Q
Sbjct:   230 VCAEQSLSFVANNDGVSPLYLAVEAGQADLAKTMWQ 265

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1N642 ANKRD27 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 131 (51.2 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
 Identities = 41/130 (31%), Positives = 57/130 (43%)

Query:   121 LGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAE 180
             +G ++  +   LH A Q G   VVK LL ++ A P   + SG TPL  A +R H E++A 
Sbjct:   769 VGARDASQAVPLHLACQQGHFQVVKCLLESN-AKPNKKDISGNTPLIYACSRGHHEVAAL 827

Query:   181 ILQKCPSPAHEGPNGKTALHXXXXXXXXXXXXXHKLHRSSRFLPSPRSCLI-----PNST 235
             +LQ   S       G TALH               LH +S  + + R C        NS 
Sbjct:   828 LLQHGASINASNNKGNTALHEAVIERHVFVVELLLLHGASAQVLNKRQCTAIDCAEQNSK 887

Query:   236 TTSLFALIPS 245
                L  ++PS
Sbjct:   888 IMELLQVVPS 897

GO:0045022 "early endosome to late endosome transport" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

UNIPROTKB|F1RNY3 ANKRD27 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 131 (51.2 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
 Identities = 41/130 (31%), Positives = 57/130 (43%)

Query:   121 LGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAE 180
             +G ++  +   LH A Q G   VVK LL ++ A P   + SG TPL  A +R H E++A 
Sbjct:   772 VGARDANQAVPLHLACQKGHFQVVKCLLASN-AKPNKKDLSGNTPLIYACSRGHHEVAAL 830

Query:   181 ILQKCPSPAHEGPNGKTALHXXXXXXXXXXXXXHKLHRSSRFLPSPRSCLI-----PNST 235
             +LQ   S       G TALH               LH +S  + + R C        NS 
Sbjct:   831 LLQHGASINTSNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQCTAIDCAEQNSK 890

Query:   236 TTSLFALIPS 245
                L  ++PS
Sbjct:   891 IMELLQVVPS 900

GO:0045022 "early endosome to late endosome transport" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

TAIR|locus:2170081 AT5G50140 "AT5G50140" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 6.1e-10, P = 6.1e-10
 Identities = 42/125 (33%), Positives = 71/125 (56%)

Query:    58 KFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTA 117
             + V++I+E+ PSL+   N K D PLH+AAR GH +++  ++E +  ES + +E  V +  
Sbjct:    41 ELVKKIVEIHPSLVSSTNTKSDTPLHLAARLGHTSILLLMLE-STAESIESLEETVPNDL 99

Query:   118 RHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADP-AFPYSANGSGETPLYLAAARAHKE 176
             + +  M N +  T LH AV +GS++ +   +   P +F      + ET  +LAA   HK+
Sbjct:   100 K-LAEMVNKDGFTPLHCAVMNGSVETLTAFINKAPLSFDSVTLQTSETVFHLAAR--HKK 156

Query:   177 ISAEI 181
             + A I
Sbjct:   157 MEAFI 161

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q96NW4 ANKRD27 "Ankyrin repeat domain-containing protein 27" [Homo sapiens (taxid:9606)]

 Score = 123 (48.4 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
 Identities = 41/129 (31%), Positives = 55/129 (42%)

Query:   122 GMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEI 181
             G +N ++   LH A Q G   VVK LL ++ A P   + SG TPL  A +  H E+ A +
Sbjct:   771 GARNADQAVPLHLACQQGHFQVVKCLLDSN-AKPNKKDLSGNTPLIYACSGGHHELVALL 829

Query:   182 LQKCPSPAHEGPNGKTALHXXXXXXXXXXXXXHKLHRSSRFLPSPRS-----CLIPNSTT 236
             LQ   S       G TALH               LH +S  + + R      C   NS  
Sbjct:   830 LQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKI 889

Query:   237 TSLFALIPS 245
               L  ++PS
Sbjct:   890 MELLQVVPS 898

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IDA

GO:0005769 "early endosome" evidence=IDA

GO:0045022 "early endosome to late endosome transport" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005764 "lysosome" evidence=IDA

TAIR|locus:2129690 ACD6 "AT4G14400" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 5.0e-09, P = 5.0e-09
 Identities = 54/177 (30%), Positives = 84/177 (47%)

Query:     1 MNSDLYEAAAKGEIEPFNQLAIDRQLGSLVTH-KKNTVLHVNIIASYTQNKEGESVSTKF 59
             M  +++   + GE E   +L   R  G+ +   K NT   +  IA+    K G     + 
Sbjct:    67 MTPEIFGGMSNGEKECLEKL---RSNGTPMERVKSNTGDSILHIAA----KWGH---LEL 116

Query:    60 VERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALI-EIAKQESDQEIESGVESTAR 118
             V+ II  CP LL + N+    PLHVA   GH  VVEAL+  +    +    E   E    
Sbjct:   117 VKEIIFECPCLLFEQNSSRQTPLHVATHGGHTKVVEALVASVTSALASLSTEES-EGLNP 175

Query:   119 HMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHK 175
             H+L  K+++ +TAL+ A++   L++   L+ AD   P+  N  G + LY A    +K
Sbjct:   176 HVL--KDEDGNTALYYAIEGRYLEMATCLVNADKDAPFLGNNKGISSLYEAVDAGNK 230

GO:0008219 "cell death" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IMP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0016020 "membrane" evidence=ISS;IDA

GO:0009615 "response to virus" evidence=IEP

ZFIN|ZDB-GENE-040426-2042 ripk4 "receptor-interacting serine-threonine kinase 4" [Danio rerio (taxid:7955)]

 Score = 159 (61.0 bits), Expect = 6.8e-09, P = 6.8e-09
 Identities = 52/140 (37%), Positives = 71/140 (50%)

Query:    78 GDAPLHVAARYGHAAVVEALIEIAKQ---ESDQ-------EIESGVESTAR----HMLGM 123
             G +PLH+A++ G   V   L+E+       SD          E+G  ST+R    H   +
Sbjct:   616 GRSPLHLASQRGQYRVARILVELGANVHLTSDDLYAPLHVAAETGHTSTSRLLVKHDADI 675

Query:   124 KNDEED--TALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEI 181
             K+   +  TALH A Q G L  VK+LL A+ A P S N    TP +LAA   H E+  E+
Sbjct:   676 KSRTANGCTALHLASQKGHLPTVKMLL-AEGADPESVNHDLRTPCHLAAQNGHCEVLKEL 734

Query:   182 LQKCPSPAH-EGPNGKTALH 200
             L+ C   A+ +  NG TALH
Sbjct:   735 LRSCSDVANAQDRNGLTALH 754

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

TAIR|locus:2020833 AT1G03670 "AT1G03670" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 47/174 (27%), Positives = 78/174 (44%)

Query:    29 LVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARY 88
             LV ++ N++LH+     +             VE II   P+LL  VN  G+  LHVAAR 
Sbjct:    67 LVDNQGNSILHIAAALGHVH----------IVEFIISTFPNLLQNVNLMGETTLHVAARA 116

Query:    89 GHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILL 148
             G   +VE L+    + S  +            +  K+   DTALH A++   ++V   L+
Sbjct:   117 GSLNIVEILVRFITESSSYDA----------FIAAKSKNGDTALHAALKGKHVEVAFCLV 166

Query:   149 GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGP--NGKTALH 200
                    +  N    +PLY+A    + E+  ++L+   SP+      +GK+ +H
Sbjct:   167 SVKHDVSFDKNNDEASPLYMAVEAGYHELVLKMLESSSSPSILASMFSGKSVIH 220

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_scaffold_120000023	hypothetical protein (217 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pg.C_scaffold_7044000001	annotation not avaliable (189 aa)			•						0.412
	eugene3.00400032	hypothetical protein (195 aa)			•						0.403

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	264
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-19
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-14
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-14
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-11
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-10
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-10
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-09
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-06
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	5e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	9e-04
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	0.001
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.002
PHA02741	169	PHA02741, PHA02741, hypothetical protein; Provisio	0.004
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 80.9 bits (200), Expect = 3e-19
 Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 18/133 (13%)

Query: 73  QVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTAL 132
             +  G  PLH+AA  GH  VV+ L+E                     +  K+++  T L
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLE-----------------NGADVNAKDNDGRTPL 44

Query: 133 HEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEG 192
           H A ++G L++VK+LL    A   + +  G TPL+LAA   + ++   +L+         
Sbjct: 45  HLAAKNGHLEIVKLLLEKG-ADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARD 103

Query: 193 PNGKTALHAAVCS 205
            +G+T LH A  +
Sbjct: 104 KDGRTPLHLAAKN 116

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 68.6 bits (168), Expect = 1e-14
 Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 123 MKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEIL 182
            ++++  T LH A  +G L+VVK+LL    A   + +  G TPL+LAA   H EI   +L
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENG-ADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 183 QKCPSPAHEGPNGKTALHAAVCSR 206
           +K         +G T LH A  + 
Sbjct: 61  EKGADVNARDKDGNTPLHLAARNG 84

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 67.8 bits (166), Expect = 2e-14
 Identities = 45/148 (30%), Positives = 69/148 (46%), Gaps = 29/148 (19%)

Query: 35  NTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVV 94
            T LH   +A+   + E        V+ ++E    +  + +  G  PLH+AA+ GH  +V
Sbjct: 8   RTPLH---LAASNGHLE-------VVKLLLENGADVNAK-DNDGRTPLHLAAKNGHLEIV 56

Query: 95  EALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAF 154
           + L+E            G +  AR   G       T LH A ++G+LDVVK+LL    A 
Sbjct: 57  KLLLE-----------KGADVNARDKDGN------TPLHLAARNGNLDVVKLLLKHG-AD 98

Query: 155 PYSANGSGETPLYLAAARAHKEISAEIL 182
             + +  G TPL+LAA   H E+   +L
Sbjct: 99  VNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 58.4 bits (142), Expect = 2e-11
 Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 25/103 (24%)

Query: 82  LHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSL 141
           LH+AA+ G+  +V+ L+E                       +   + DTALH A ++G+L
Sbjct: 1   LHLAAKNGNLELVKLLLE-------------------KGADVNLGDTDTALHLAARNGNL 41

Query: 142 DVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEIL 182
           ++VK+LL  GAD     + +  G T L+LAA   + EI  ++L
Sbjct: 42  EIVKLLLEHGADVN---AKDKDGNTALHLAARNGNLEI-VKLL 80

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 54.6 bits (132), Expect = 5e-10
 Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 7/78 (8%)

Query: 132 LHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPA 189
           LH A ++G+L++VK+LL  GAD        G  +T L+LAA   + EI   +L+      
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNL-----GDTDTALHLAARNGNLEIVKLLLEHGADVN 55

Query: 190 HEGPNGKTALHAAVCSRS 207
            +  +G TALH A  + +
Sbjct: 56  AKDKDGNTALHLAARNGN 73

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 54.6 bits (132), Expect = 6e-10
 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 22/99 (22%)

Query: 56  STKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVES 115
           + + V+ ++E    + L      D  LH+AAR G+  +V+ L+E            G + 
Sbjct: 9   NLELVKLLLEKGADVNLGDT---DTALHLAARNGNLEIVKLLLE-----------HGADV 54

Query: 116 TARHMLGMKNDEEDTALHEAVQSGSLDVVKILL--GADP 152
            A+   G       TALH A ++G+L++VK+LL  GAD 
Sbjct: 55  NAKDKDGN------TALHLAARNGNLEIVKLLLEHGADI 87

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 53.2 bits (128), Expect = 5e-09
 Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 28/120 (23%)

Query: 29  LVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARY 88
              +   T LH   +A+   + E        V+ ++E    +  + +  G+ PLH+AAR 
Sbjct: 35  AKDNDGRTPLH---LAAKNGHLE-------IVKLLLEKGADVNAR-DKDGNTPLHLAARN 83

Query: 89  GHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILL 148
           G+  VV+ L++                     +  ++ +  T LH A ++G L+VVK+LL
Sbjct: 84  GNLDVVKLLLK-----------------HGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 18/123 (14%)

Query: 74  VNAKGDAPLHVAARYGHA--AVVEALIE----I-AKQESDQEIESGVESTARHMLGMKND 126
            N+ G+  LH+          +++ LI+    I AK   +  +  GV       + +K+ 
Sbjct: 137 KNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVP------INIKDV 190

Query: 127 EEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQK 184
              T LH AV + + + VK LL  GA+P      N  G+TPL++A    +KEI   +L  
Sbjct: 191 YGFTPLHYAVYNNNPEFVKYLLDLGANPN---LVNKYGDTPLHIAILNNNKEIFKLLLNN 247

Query: 185 CPS 187
            PS
Sbjct: 248 GPS 250

Length = 422

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 47.9 bits (113), Expect = 1e-06
 Identities = 42/156 (26%), Positives = 62/156 (39%), Gaps = 25/156 (16%)

Query: 55  VSTKFVERIIEMC-PSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGV 113
            +    E ++++     L   +  G  PLH AA  G   +V+ L+            SG 
Sbjct: 49  PAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLA-----------SGA 97

Query: 114 ESTARHMLGMKNDEEDTALHEAVQSGSL-----DVVKILL--GADPAFPYSANGSGETPL 166
           +  A+   G      DT LH A  +G+      +V K+LL  GAD       +  G TPL
Sbjct: 98  DVNAKDADG------DTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPL 151

Query: 167 YLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAA 202
           + AA     +I   +L+    P      G TAL  A
Sbjct: 152 HWAALNGDADIVELLLEAGADPNSRNSYGVTALDPA 187

Length = 235

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 42.6 bits (101), Expect = 5e-06
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 128 EDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEI 177
             TALH+A  SG L++VK LL          +  G T L++AA   + E+
Sbjct: 1   GRTALHKAAISGRLELVKYLL-EKGVDINRTDEDGNTALHIAAENGNLEV 49

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 17/71 (23%)

Query: 78  GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQ 137
           G   LH AA  G   +V+ L+E            GV+          +++ +TALH A +
Sbjct: 1   GRTALHKAAISGRLELVKYLLE-----------KGVDINRT------DEDGNTALHIAAE 43

Query: 138 SGSLDVVKILL 148
           +G+L+V+K+LL
Sbjct: 44  NGNLEVLKLLL 54

Length = 54

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 35.6 bits (83), Expect = 9e-04
 Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 2/26 (7%)

Query: 129 DTALHEAVQSGSLDVVKILL--GADP 152
           +T LH A ++G L+VVK+LL  GAD 
Sbjct: 3   NTPLHLAARNGHLEVVKLLLEAGADV 28

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 39.0 bits (90), Expect = 0.001
 Identities = 34/148 (22%), Positives = 58/148 (39%), Gaps = 24/148 (16%)

Query: 3   SDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVER 62
             L+ AA+KG+ +    L       +      +T LH+  +         E       + 
Sbjct: 75  LPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIE-----VAKL 129

Query: 63  IIEM--CPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHM 120
           ++E      +    +  G+ PLH AA  G A +VE L+E     +D              
Sbjct: 130 LLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAG---ADPNS----------- 175

Query: 121 LGMKNDEEDTALHEAVQSGSLDVVKILL 148
              +N    TAL  A ++G +++VK+LL
Sbjct: 176 ---RNSYGVTALDPAAKNGRIELVKLLL 200

Length = 235

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 34.5 bits (80), Expect = 0.002
 Identities = 13/23 (56%), Positives = 17/23 (73%)

Query: 77 KGDAPLHVAARYGHAAVVEALIE 99
           G+ PLH+AAR GH  VV+ L+E
Sbjct: 1  DGNTPLHLAARNGHLEVVKLLLE 23

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional

 Score = 36.9 bits (85), Expect = 0.004
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 10/97 (10%)

Query: 120 MLGMKNDEEDTALHEAVQSGSLDVVK-----ILLGADPAFPYSANGSGETPLYLAAARAH 174
           M+  KN E +   HEA + G  D++      I      A   + + +G+  +++AA +  
Sbjct: 13  MIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHE 72

Query: 175 KEISAEILQKCPS-----PAHEGPNGKTALHAAVCSR 206
            +++AEI+           A E   G TALH A   R
Sbjct: 73  AQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRR 109

Length = 169

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 37.7 bits (88), Expect = 0.004
 Identities = 38/165 (23%), Positives = 67/165 (40%), Gaps = 35/165 (21%)

Query: 60  VERIIEMCPSLLLQ----VNAK---GDAPLHVAAR--YGHAAVVEALIEIAKQESDQEIE 110
              +I+    LL++    VNAK   G  PLHV       +  V+  L+            
Sbjct: 96  TLDVIK----LLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLR----------- 140

Query: 111 SGVESTARHMLGMKNDEEDTALHEAVQSG--SLDVVKILLGADPAFPYSANGSGETPL-- 166
            G +  A  + GM      T L   ++S   +++++++L+ A  A  Y+ +    + L  
Sbjct: 141 KGADVNALDLYGM------TPLAVLLKSRNANVELLRLLIDAG-ADVYAVDDRFRSLLHH 193

Query: 167 YLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAAS 211
           +L + +    I  E+++    PA     G T LH+     SC  S
Sbjct: 194 HLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRS 238

Length = 471

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	264
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02859	209	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.98
PHA03095	471	ankyrin-like protein; Provisional	99.97
PHA02946	446	ankyin-like protein; Provisional	99.97
PHA03100	480	ankyrin repeat protein; Provisional	99.97
PHA02989	494	ankyrin repeat protein; Provisional	99.97
KOG0510	929	consensus Ankyrin repeat protein [General function	99.97
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.97
PHA02878	477	ankyrin repeat protein; Provisional	99.97
PHA02798	489	ankyrin-like protein; Provisional	99.97
PHA02946	446	ankyin-like protein; Provisional	99.97
KOG0508	615	consensus Ankyrin repeat protein [General function	99.96
PHA02876	682	ankyrin repeat protein; Provisional	99.96
PHA02876	682	ankyrin repeat protein; Provisional	99.96
KOG0510	929	consensus Ankyrin repeat protein [General function	99.96
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.96
PHA02795	437	ankyrin-like protein; Provisional	99.96
PHA02798	489	ankyrin-like protein; Provisional	99.96
PHA02989	494	ankyrin repeat protein; Provisional	99.95
PHA03095	471	ankyrin-like protein; Provisional	99.95
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.95
PHA02917	661	ankyrin-like protein; Provisional	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.95
KOG0508	615	consensus Ankyrin repeat protein [General function	99.94
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.94
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.93
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.93
PHA02795	437	ankyrin-like protein; Provisional	99.93
PHA02730	672	ankyrin-like protein; Provisional	99.92
PHA02917	661	ankyrin-like protein; Provisional	99.92
PHA02730	672	ankyrin-like protein; Provisional	99.91
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.91
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.91
PHA02743	166	Viral ankyrin protein; Provisional	99.9
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.9
PHA02741	169	hypothetical protein; Provisional	99.9
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.9
KOG0514	452	consensus Ankyrin repeat protein [General function	99.89
KOG0514	452	consensus Ankyrin repeat protein [General function	99.89
PHA02743	166	Viral ankyrin protein; Provisional	99.89
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.89
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.89
PHA02736	154	Viral ankyrin protein; Provisional	99.88
PHA02741	169	hypothetical protein; Provisional	99.88
PHA02792	631	ankyrin-like protein; Provisional	99.88
PHA02792	631	ankyrin-like protein; Provisional	99.88
PHA02884	300	ankyrin repeat protein; Provisional	99.87
PHA02736	154	Viral ankyrin protein; Provisional	99.87
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.87
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.86
PHA02884	300	ankyrin repeat protein; Provisional	99.86
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.86
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.83
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.81
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.81
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.79
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.78
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.77
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.76
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.73
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.73
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.7
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.66
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.64
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.63
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.62
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.59
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.53
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.51
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.51
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.5
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.49
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.47
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.47
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.47
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.45
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.39
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.97
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.94
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.9
PF13606	30	Ank_3: Ankyrin repeat	98.89
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.84
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.82
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.81
PF13606	30	Ank_3: Ankyrin repeat	98.8
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.78
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.72
KOG0522	560	consensus Ankyrin repeat protein [General function	98.62
KOG0522	560	consensus Ankyrin repeat protein [General function	98.6
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.56
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.56
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.53
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.42
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.38
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.36
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.31
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.27
KOG2384	223	consensus Major histocompatibility complex protein	98.09
KOG2384	223	consensus Major histocompatibility complex protein	98.05
KOG0511	516	consensus Ankyrin repeat protein [General function	98.03
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.02
KOG0511	516	consensus Ankyrin repeat protein [General function	98.01
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.84
KOG2505	591	consensus Ankyrin repeat protein [General function	97.19
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.11
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.92
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.72
KOG2505	591	consensus Ankyrin repeat protein [General function	96.33
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.68
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	95.55
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.25
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	94.47
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	94.03

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.7e-37  Score=219.72  Aligned_cols=195  Identities=20%  Similarity=0.177  Sum_probs=172.9

Q ss_pred             CcHHHHHHHcCCchHHhhhhh-hcccccccCC-CCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCC
Q 047844            2 NSDLYEAAAKGEIEPFNQLAI-DRQLGSLVTH-KKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGD   79 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~-~~~~~~~~~~-~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~   79 (264)
                      +++.+.+|...-...++.+++ ++...+.++. +|+||||+||  ..|+        .+++++|++...-.++..|..||
T Consensus         4 ~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~--S~g~--------~eiv~fLlsq~nv~~ddkDdaGW   73 (226)
T KOG4412|consen    4 ASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWAC--SFGH--------VEIVYFLLSQPNVKPDDKDDAGW   73 (226)
T ss_pred             cchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeee--ecCc--------hhHHHHHHhcCCCCCCCccccCC
Confidence            577888888888888888888 5544444555 9999999999  9999        99999999865555788899999


Q ss_pred             hHHHHHHHhCCHHHHHHHHHH-hhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCC
Q 047844           80 APLHVAARYGHAAVVEALIEI-AKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSA  158 (264)
Q Consensus        80 t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~  158 (264)
                      ||||+|+..|+.++|+.|+.. |++++                 ..+..|.|+||+|+..|..+++.+|+++|+.+ +.+
T Consensus        74 tPlhia~s~g~~evVk~Ll~r~~advn-----------------a~tn~G~T~LHyAagK~r~eIaqlLle~ga~i-~~k  135 (226)
T KOG4412|consen   74 TPLHIAASNGNDEVVKELLNRSGADVN-----------------ATTNGGQTCLHYAAGKGRLEIAQLLLEKGALI-RIK  135 (226)
T ss_pred             chhhhhhhcCcHHHHHHHhcCCCCCcc-----------------eecCCCcceehhhhcCChhhHHHHHHhcCCCC-ccc
Confidence            999999999999999999998 77754                 48999999999999999999999999999885 899


Q ss_pred             CCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhCCCCCC
Q 047844          159 NGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSSRFLP  224 (264)
Q Consensus       159 ~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~~~~  224 (264)
                      |..|.||||-|+.-|..+++++|+..|+.+|..|..|+||||.|...++.+....|..+++.-...
T Consensus       136 D~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~e  201 (226)
T KOG4412|consen  136 DKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDRE  201 (226)
T ss_pred             ccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhccceeec
Confidence            999999999999999999999999999999999999999999998889999999998888764443

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.5e-37  Score=219.88  Aligned_cols=173  Identities=23%  Similarity=0.274  Sum_probs=158.1

Q ss_pred             cHHHHHHHcCCchHHhhhhhhcc-cccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHh-CCccceecCCCCCh
Q 047844            3 SDLYEAAAKGEIEPFNQLAIDRQ-LGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEM-CPSLLLQVNAKGDA   80 (264)
Q Consensus         3 ~~l~~A~~~g~~~~~~~l~~~~~-~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~-~~~~~~~~~~~g~t   80 (264)
                      ||||+||..|+.+++++|+..++ ..+..|..||||||+||  ..|+        .++++.|+.. +++ ++..+..|+|
T Consensus        40 t~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~--s~g~--------~evVk~Ll~r~~ad-vna~tn~G~T  108 (226)
T KOG4412|consen   40 TPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAA--SNGN--------DEVVKELLNRSGAD-VNATTNGGQT  108 (226)
T ss_pred             ceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhh--hcCc--------HHHHHHHhcCCCCC-cceecCCCcc
Confidence            79999999999999999996211 12226889999999999  9999        9999999998 677 8999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCC
Q 047844           81 PLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANG  160 (264)
Q Consensus        81 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  160 (264)
                      |||||+..|+.+|+++|+++|+.+..                 +|..|.||||-|+.-|.++++++|+..|+.+ +..|.
T Consensus       109 ~LHyAagK~r~eIaqlLle~ga~i~~-----------------kD~~~qtplHRAAavGklkvie~Li~~~a~~-n~qDk  170 (226)
T KOG4412|consen  109 CLHYAAGKGRLEIAQLLLEKGALIRI-----------------KDKQGQTPLHRAAAVGKLKVIEYLISQGAPL-NTQDK  170 (226)
T ss_pred             eehhhhcCChhhHHHHHHhcCCCCcc-----------------cccccCchhHHHHhccchhhHHHHHhcCCCC-Ccccc
Confidence            99999999999999999999988655                 9999999999999999999999999999885 89999


Q ss_pred             CCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhc
Q 047844          161 SGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCS  205 (264)
Q Consensus       161 ~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~  205 (264)
                      .|+||||.|...++.+....|+++|++.+..|+.| ||+..|+..
T Consensus       171 ~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~~~  214 (226)
T KOG4412|consen  171 YGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIACNE  214 (226)
T ss_pred             cCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHHHHH
Confidence            99999999988999999999999999999999988 998887654

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.3e-35  Score=235.78  Aligned_cols=193  Identities=15%  Similarity=0.085  Sum_probs=169.6

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChH
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAP   81 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~   81 (264)
                      .||||+|+..|+.++++.|++.+...+  ..+|.||||.|+  ..|+        .+++++|++.+.+ ++..|..|+||
T Consensus        31 ~TpLh~Aa~~g~~eiv~~Ll~~ga~~n--~~d~~TpLh~Aa--~~g~--------~eiV~lLL~~Gad-vn~~d~~G~Tp   97 (284)
T PHA02791         31 HSALYYAIADNNVRLVCTLLNAGALKN--LLENEFPLHQAA--TLED--------TKIVKILLFSGMD-DSQFDDKGNTA   97 (284)
T ss_pred             CcHHHHHHHcCCHHHHHHHHHCcCCCc--CCCCCCHHHHHH--HCCC--------HHHHHHHHHCCCC-CCCCCCCCCCH
Confidence            589999999999999999999433322  235789999999  9999        9999999999988 78899999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCC-CChhhHHHhcCCHHHHHHHhcCCCCCCCCCCC
Q 047844           82 LHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEE-DTALHEAVQSGSLDVVKILLGADPAFPYSANG  160 (264)
Q Consensus        82 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  160 (264)
                      ||+|+..|+.+++++|++.|++.+.                 ++..| .||||+|+..|+.+++++|++.++...+  ..
T Consensus        98 Lh~Aa~~g~~eivk~Ll~~gadin~-----------------~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d--~~  158 (284)
T PHA02791         98 LYYAVDSGNMQTVKLFVKKNWRLMF-----------------YGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--LA  158 (284)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCcCc-----------------cCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcccc--cc
Confidence            9999999999999999999988543                 67777 4899999999999999999998765321  13


Q ss_pred             CCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccH-HhHHHhcCChHHHHHHHhhhCCCCCCCC
Q 047844          161 SGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTA-LHAAVCSRSCAASRCHKLHRSSRFLPSP  226 (264)
Q Consensus       161 ~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tp-l~~A~~~~~~~~~~~l~~~~~~~~~~~~  226 (264)
                      .|.||||+|++.|+.+++++|+++|++++.++..|.|| ||+|+.+++.+++++|+.+++.......
T Consensus       159 ~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~  225 (284)
T PHA02791        159 ILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNL  225 (284)
T ss_pred             cCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcc
Confidence            58999999999999999999999999999999999987 9999999999999999999987544443

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8.5e-33  Score=235.65  Aligned_cols=207  Identities=17%  Similarity=0.175  Sum_probs=125.4

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChH
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAP   81 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~   81 (264)
                      +++||.|+..|+.+++++|++.+...+..+..|.||||.|+  ..|+        .+++++|++.|.+ ++..+..+.||
T Consensus         3 ~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~--~~~~--------~~~v~~Ll~~ga~-~~~~~~~~~t~   71 (413)
T PHA02875          3 QVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAM--KFRD--------SEAIKLLMKHGAI-PDVKYPDIESE   71 (413)
T ss_pred             chHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHH--HcCC--------HHHHHHHHhCCCC-ccccCCCcccH
Confidence            35677777777777777777632222335666777777777  7777        7777777777765 45555666667


Q ss_pred             HHHHHHhCCHHHHHHHHHHhhhcchhhh-----------hhchhhHHHHH------hcCCCCCCCChhhHHHhcCCHHHH
Q 047844           82 LHVAARYGHAAVVEALIEIAKQESDQEI-----------ESGVESTARHM------LGMKNDEEDTALHEAVQSGSLDVV  144 (264)
Q Consensus        82 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-----------~~~~~~~~~~~------l~~~~~~g~t~L~~A~~~~~~~~~  144 (264)
                      ||.|+..|+.+++++|++.|+.......           ..+.......+      ++.++..|.||||+|+..|+.+++
T Consensus        72 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v  151 (413)
T PHA02875         72 LHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGI  151 (413)
T ss_pred             HHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence            7777777777777766666654322100           00001111111      123555666666666666666666


Q ss_pred             HHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCc-cHHhHHHhcCChHHHHHHHhhhCC
Q 047844          145 KILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGK-TALHAAVCSRSCAASRCHKLHRSS  220 (264)
Q Consensus       145 ~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~-tpl~~A~~~~~~~~~~~l~~~~~~  220 (264)
                      ++|++.|+++ +.+|..|+||||+|+..|+.+++++|++.|++++..+..|. +|+++|+..++.+++++|+.+++.
T Consensus       152 ~~Ll~~g~~~-~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad  227 (413)
T PHA02875        152 ELLIDHKACL-DIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGAD  227 (413)
T ss_pred             HHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcC
Confidence            6666666664 45666666666666666666666666666666666665553 566666666666666666666554

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.6e-32  Score=234.00  Aligned_cols=177  Identities=16%  Similarity=0.138  Sum_probs=154.9

Q ss_pred             CCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhh----
Q 047844           34 KNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEI----  109 (264)
Q Consensus        34 g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~----  109 (264)
                      ..++||.|+  ..|+        .+++++|++.|.+ ++..+..|.||||+|+..|+.+++++|+++|+.++....    
T Consensus         2 ~~~~L~~A~--~~g~--------~~iv~~Ll~~g~~-~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t   70 (413)
T PHA02875          2 DQVALCDAI--LFGE--------LDIARRLLDIGIN-PNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIES   70 (413)
T ss_pred             CchHHHHHH--HhCC--------HHHHHHHHHCCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCccc
Confidence            568999999  9999        9999999999998 788888999999999999999999999999987654311    


Q ss_pred             ------hhchhhHHHHHhc-------CCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHH
Q 047844          110 ------ESGVESTARHMLG-------MKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKE  176 (264)
Q Consensus       110 ------~~~~~~~~~~~l~-------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~  176 (264)
                            ..+.......++.       ..+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+
T Consensus        71 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~-~~~~~~g~tpLh~A~~~~~~~  149 (413)
T PHA02875         71 ELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADP-DIPNTDKFSPLHLAVMMGDIK  149 (413)
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHH
Confidence                  1222233333332       34567999999999999999999999999995 788999999999999999999


Q ss_pred             HHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhCCCC
Q 047844          177 ISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSSRF  222 (264)
Q Consensus       177 ~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~~  222 (264)
                      ++++|+++|++++.+|..|.||||+|+..|+.+++++|+..++...
T Consensus       150 ~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n  195 (413)
T PHA02875        150 GIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANID  195 (413)
T ss_pred             HHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC
Confidence            9999999999999999999999999999999999999999987643

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.9e-32  Score=217.96  Aligned_cols=180  Identities=14%  Similarity=0.083  Sum_probs=159.1

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCC-h
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGD-A   80 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~-t   80 (264)
                      .||||+|+..|+.++++.|++.+...+..|..|.||||+|+  ..|+        .+++++|++.+++ ++..+..|+ |
T Consensus        62 ~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa--~~g~--------~eivk~Ll~~gad-in~~~~~g~~T  130 (284)
T PHA02791         62 EFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAV--DSGN--------MQTVKLFVKKNWR-LMFYGKTGWKT  130 (284)
T ss_pred             CCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH--HcCC--------HHHHHHHHHCCCC-cCccCCCCCcH
Confidence            48999999999999999999844444458999999999999  9999        9999999999998 677888875 8


Q ss_pred             HHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCC-CCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCC
Q 047844           81 PLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKN-DEEDTALHEAVQSGSLDVVKILLGADPAFPYSAN  159 (264)
Q Consensus        81 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~  159 (264)
                      |||+|+..|+.+++++|++.++..                   .+ ..|.||||+|++.|+.+++++|++.|+++ +.+|
T Consensus       131 pL~~Aa~~g~~eivk~LL~~~~~~-------------------~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~-n~~d  190 (284)
T PHA02791        131 SFYHAVMLNDVSIVSYFLSEIPST-------------------FDLAILLSCIHITIKNGHVDMMILLLDYMTST-NTNN  190 (284)
T ss_pred             HHHHHHHcCCHHHHHHHHhcCCcc-------------------cccccCccHHHHHHHcCCHHHHHHHHHCCCCC-Cccc
Confidence            999999999999999999986432                   22 25899999999999999999999999995 7888


Q ss_pred             CCCCCH-HHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhC
Q 047844          160 GSGETP-LYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRS  219 (264)
Q Consensus       160 ~~g~t~-Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~  219 (264)
                      ..|.|| ||+|+..|+.+++++|+++|++++.+|..+ +++      ++.|++++|+++-+
T Consensus       191 ~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~-~~l------~~~e~~~~ll~~~~  244 (284)
T PHA02791        191 SLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLEN-VLL------DDAEIAKMIIEKHV  244 (284)
T ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccC-ccC------CCHHHHHHHHHhhh
Confidence            889987 999999999999999999999999999854 555      78899999997754

>PHA02859 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.7e-32  Score=209.26  Aligned_cols=173  Identities=13%  Similarity=0.142  Sum_probs=155.0

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhh--cCcCCCcccHHHHHHHHHhCCccceecC-CCC
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYT--QNKEGESVSTKFVERIIEMCPSLLLQVN-AKG   78 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g--~~~~~~~~~~~~~~~ll~~~~~~~~~~~-~~g   78 (264)
                      .+|||+|+..|+++.|+.|++.++.   .+..|.||||.|+  ..+  +        .+++++|++.+++ ++..+ ..|
T Consensus        22 ~~pL~~A~~~~~~~~vk~Li~~~n~---~~~~g~TpLh~a~--~~~~~~--------~eiv~~Ll~~gad-vn~~~~~~g   87 (209)
T PHA02859         22 CNPLFYYVEKDDIEGVKKWIKFVND---CNDLYETPIFSCL--EKDKVN--------VEILKFLIENGAD-VNFKTRDNN   87 (209)
T ss_pred             CcHHHHHHHhCcHHHHHHHHHhhhc---cCccCCCHHHHHH--HcCCCC--------HHHHHHHHHCCCC-CCccCCCCC
Confidence            5899999999999999999987655   7899999999999  754  8        9999999999999 67775 589


Q ss_pred             ChHHHHHHHh---CCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhc--CCHHHHHHHhcCCCC
Q 047844           79 DAPLHVAARY---GHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQS--GSLDVVKILLGADPA  153 (264)
Q Consensus        79 ~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~--~~~~~~~~Ll~~g~~  153 (264)
                      .||||+|+..   ++.+++++|+++|++++.                 ++..|.||||.|+..  ++.+++++|++.|++
T Consensus        88 ~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~-----------------~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gad  150 (209)
T PHA02859         88 LSALHHYLSFNKNVEPEILKILIDSGSSITE-----------------EDEDGKNLLHMYMCNFNVRINVIKLLIDSGVS  150 (209)
T ss_pred             CCHHHHHHHhCccccHHHHHHHHHCCCCCCC-----------------cCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC
Confidence            9999998864   479999999999998654                 899999999999864  689999999999999


Q ss_pred             CCCCCCCCCCCHHHH-HHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcC
Q 047844          154 FPYSANGSGETPLYL-AAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSR  206 (264)
Q Consensus       154 ~~~~~~~~g~t~Lh~-A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~  206 (264)
                      + +.+|..|.||||. |+..++.+++++|+++|++++.+|..|+||+++|..++
T Consensus       151 i-n~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        151 F-LNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             c-ccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            6 7899999999996 56678999999999999999999999999999998765

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1e-31  Score=230.12  Aligned_cols=208  Identities=22%  Similarity=0.253  Sum_probs=182.3

Q ss_pred             CCcHHHHHHHcCCchHHhhhhh-hcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCC
Q 047844            1 MNSDLYEAAAKGEIEPFNQLAI-DRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGD   79 (264)
Q Consensus         1 ~~~~l~~A~~~g~~~~~~~l~~-~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~   79 (264)
                      |...|+.|+..|+++.++.|++ .+...+..+..|.||||.|+  ..|+        .+++++|++.|++ ++..+..|.
T Consensus         1 ~~~~l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~--~~g~--------~~iv~~Ll~~Ga~-~n~~~~~~~   69 (434)
T PHA02874          1 ASQDLRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAI--RSGD--------AKIVELFIKHGAD-INHINTKIP   69 (434)
T ss_pred             CcHHHHHHHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHH--HcCC--------HHHHHHHHHCCCC-CCCCCCCCC
Confidence            3457899999999999999997 44444557888999999999  9999        9999999999998 788899999


Q ss_pred             hHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHH------HhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCC
Q 047844           80 APLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARH------MLGMKNDEEDTALHEAVQSGSLDVVKILLGADPA  153 (264)
Q Consensus        80 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~------~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~  153 (264)
                      ||||.|+..|+.+++++|+++|++................      .++.++..|.||||+|+..|+.+++++|++.|++
T Consensus        70 t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad  149 (434)
T PHA02874         70 HPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGAD  149 (434)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCC
Confidence            9999999999999999999999876543322222222332      2456788999999999999999999999999999


Q ss_pred             CCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhCC
Q 047844          154 FPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSS  220 (264)
Q Consensus       154 ~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~  220 (264)
                      + +.+|..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..|+.+++++|+.+++.
T Consensus       150 ~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~  215 (434)
T PHA02874        150 V-NIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNH  215 (434)
T ss_pred             C-CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence            6 78899999999999999999999999999999999999999999999999999999999988764

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.8e-32  Score=235.39  Aligned_cols=190  Identities=21%  Similarity=0.219  Sum_probs=170.3

Q ss_pred             CcHHHHHH--HcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhh--cCcCCCcccHHHHHHHHHhCCccceecCCC
Q 047844            2 NSDLYEAA--AKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYT--QNKEGESVSTKFVERIIEMCPSLLLQVNAK   77 (264)
Q Consensus         2 ~~~l~~A~--~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g--~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~   77 (264)
                      .||||+|+  ..|+.+++++|++.+...+..+..|.||||.|+  ..|  +        .+++++|++.+.+ ++..+..
T Consensus       107 ~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~~~--------~~iv~~Ll~~g~d-in~~d~~  175 (480)
T PHA03100        107 ITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYL--ESNKID--------LKILKLLIDKGVD-INAKNRY  175 (480)
T ss_pred             CchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHH--HcCCCh--------HHHHHHHHHCCCC-cccccCC
Confidence            47899999  899999999999844444457888999999999  888  8        8999999999888 7778888


Q ss_pred             CChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCC------CChhhHHHhcCC--HHHHHHHhc
Q 047844           78 GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEE------DTALHEAVQSGS--LDVVKILLG  149 (264)
Q Consensus        78 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g------~t~L~~A~~~~~--~~~~~~Ll~  149 (264)
                      |.||||+|+..|+.+++++|+++|+++..                 .+..|      .||||.|+..|+  .+++++|++
T Consensus       176 g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~-----------------~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~  238 (480)
T PHA03100        176 GYTPLHIAVEKGNIDVIKFLLDNGADINA-----------------GDIETLLFTIFETPLHIAACYNEITLEVVNYLLS  238 (480)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCccC-----------------CCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHH
Confidence            99999999999999999999998887654                 66666      899999999999  999999999


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhCC
Q 047844          150 ADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSS  220 (264)
Q Consensus       150 ~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~  220 (264)
                      .|+++ +.+|..|.||||+|+..++.+++++|++.|++++.++..|.||+++|+..++.+++++|+.+++.
T Consensus       239 ~g~di-n~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~  308 (480)
T PHA03100        239 YGVPI-NIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPS  308 (480)
T ss_pred             cCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcCCC
Confidence            99995 78899999999999999999999999999999999999999999999999999999999998864

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.1e-31  Score=232.53  Aligned_cols=197  Identities=17%  Similarity=0.187  Sum_probs=162.6

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcC------------------------------
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKE------------------------------   51 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~------------------------------   51 (264)
                      .+|||+||..|+.++++.|++.+...+..|..|.||||+||  ..|+...                              
T Consensus        38 ~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~--~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~e  115 (477)
T PHA02878         38 FIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIIC--KEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVE  115 (477)
T ss_pred             cchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH--HCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHH
Confidence            37999999999999999999944444558999999999999  8765100                              


Q ss_pred             -----------C---------------CcccHHHHHHHHHhCCccceecCCC-CChHHHHHHHhCCHHHHHHHHHHhhhc
Q 047844           52 -----------G---------------ESVSTKFVERIIEMCPSLLLQVNAK-GDAPLHVAARYGHAAVVEALIEIAKQE  104 (264)
Q Consensus        52 -----------~---------------~~~~~~~~~~ll~~~~~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~~~~~  104 (264)
                                 .               .....+++++|++.|++ ++..+.. |.||||+|+..|+.+++++|++.|+++
T Consensus       116 i~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gad-in~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~  194 (477)
T PHA02878        116 IFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGAD-INMKDRHKGNTALHYATENKDQRLTELLLSYGANV  194 (477)
T ss_pred             HHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCC-CCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCC
Confidence                       0               00113478888888888 7778888 999999999999999999999999886


Q ss_pred             chhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHh-ChHHHHHHHHh
Q 047844          105 SDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAAR-AHKEISAEILQ  183 (264)
Q Consensus       105 ~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~-~~~~~~~~Ll~  183 (264)
                      +.                 .+..|.||||.|+..|+.+++++|++.|+++ +.+|..|.||||+|+.. ++.+++++|++
T Consensus       195 n~-----------------~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~i-n~~d~~g~TpLh~A~~~~~~~~iv~~Ll~  256 (477)
T PHA02878        195 NI-----------------PDKTNNSPLHHAVKHYNKPIVHILLENGAST-DARDKCGNTPLHISVGYCKDYDILKLLLE  256 (477)
T ss_pred             CC-----------------cCCCCCCHHHHHHHhCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHhcCCHHHHHHHHH
Confidence            54                 7888999999999999999999999999885 67888899999998865 68899999999


Q ss_pred             hCCCCCcCCC-CCccHHhHHHhcCChHHHHHHHhhhCCC
Q 047844          184 KCPSPAHEGP-NGKTALHAAVCSRSCAASRCHKLHRSSR  221 (264)
Q Consensus       184 ~ga~~~~~~~-~g~tpl~~A~~~~~~~~~~~l~~~~~~~  221 (264)
                      +|++++.++. .|.||||+|  .++.+++++|+.+++..
T Consensus       257 ~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadi  293 (477)
T PHA02878        257 HGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADI  293 (477)
T ss_pred             cCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCC
Confidence            9999988875 789999998  46778888888887653

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.3e-31  Score=227.04  Aligned_cols=191  Identities=18%  Similarity=0.196  Sum_probs=136.5

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCcc-----------
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSL-----------   70 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~-----------   70 (264)
                      .||||.|+..|+.+++++|++.+...+..+..|.||||.|+  ..|+        .+++++|++.+.+.           
T Consensus        36 ~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~--~~~~--------~~iv~~Ll~~g~~~~~~~~~~~~~~  105 (434)
T PHA02874         36 TTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAI--KIGA--------HDIIKLLIDNGVDTSILPIPCIEKD  105 (434)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH--HcCC--------HHHHHHHHHCCCCCCcchhccCCHH
Confidence            48999999999999999999944444447889999999999  9999        99999998876542           


Q ss_pred             -----------ceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcC
Q 047844           71 -----------LLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSG  139 (264)
Q Consensus        71 -----------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~  139 (264)
                                 ++..+..|.||||+|+..|+.+++++|++.|++++.                 ++..|.||||+|+..|
T Consensus       106 ~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~-----------------~d~~g~tpLh~A~~~~  168 (434)
T PHA02874        106 MIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNI-----------------EDDNGCYPIHIAIKHN  168 (434)
T ss_pred             HHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCC-----------------cCCCCCCHHHHHHHCC
Confidence                       456788999999999999999999999999988655                 4455555555555555


Q ss_pred             CHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCC-------------------------------CC
Q 047844          140 SLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCP-------------------------------SP  188 (264)
Q Consensus       140 ~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga-------------------------------~~  188 (264)
                      +.+++++|++.|+++ +..+..|+||||+|+..|+.+++++|++.|+                               ++
T Consensus       169 ~~~iv~~Ll~~g~~~-n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~~i~~Ll~~~~i  247 (434)
T PHA02874        169 FFDIIKLLLEKGAYA-NVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELLINNASI  247 (434)
T ss_pred             cHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChHHHHHHHcCCCC
Confidence            555555555555553 3445555555555555555555555555544                               44


Q ss_pred             CcCCCCCccHHhHHHhcC-ChHHHHHHHhhhCC
Q 047844          189 AHEGPNGKTALHAAVCSR-SCAASRCHKLHRSS  220 (264)
Q Consensus       189 ~~~~~~g~tpl~~A~~~~-~~~~~~~l~~~~~~  220 (264)
                      +.+|..|.||||+|+..+ +.+++++|+.+++.
T Consensus       248 n~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad  280 (434)
T PHA02874        248 NDQDIDGSTPLHHAINPPCDIDIIDILLYHKAD  280 (434)
T ss_pred             CCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCC
Confidence            555556666666666554 56677777666543

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.98  E-value=5.1e-32  Score=226.48  Aligned_cols=186  Identities=25%  Similarity=0.286  Sum_probs=172.0

Q ss_pred             cHHHHHHHcCCchHHhhhhhh-cccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecC-CCCCh
Q 047844            3 SDLYEAAAKGEIEPFNQLAID-RQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVN-AKGDA   80 (264)
Q Consensus         3 ~~l~~A~~~g~~~~~~~l~~~-~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~-~~g~t   80 (264)
                      ..++.|++.|+++.++.+++. ....+..|.+|.|+||+||  .+++        .+++++|++++++ +|... .-+.|
T Consensus        46 ~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAA--iNNr--------l~v~r~li~~gad-vn~~gG~l~st  114 (600)
T KOG0509|consen   46 DDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAA--INNR--------LDVARYLISHGAD-VNAIGGVLGST  114 (600)
T ss_pred             hhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHH--HcCc--------HHHHHHHHHcCCC-ccccCCCCCCC
Confidence            357899999999999999994 6677778999999999999  9999        9999999999999 66666 66899


Q ss_pred             HHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCC
Q 047844           81 PLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANG  160 (264)
Q Consensus        81 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  160 (264)
                      |||||+++|+..++++|+++|+++..                 +|..|.+|+|.|++.|+.-++-||+.+|++. +.+|.
T Consensus       115 PLHWAar~G~~~vv~lLlqhGAdpt~-----------------~D~~G~~~lHla~~~~~~~~vayll~~~~d~-d~~D~  176 (600)
T KOG0509|consen  115 PLHWAARNGHISVVDLLLQHGADPTL-----------------KDKQGLTPLHLAAQFGHTALVAYLLSKGADI-DLRDN  176 (600)
T ss_pred             cchHHHHcCcHHHHHHHHHcCCCCce-----------------ecCCCCcHHHHHHHhCchHHHHHHHHhcccC-CCcCC
Confidence            99999999999999999999999877                 9999999999999999999999999999985 79999


Q ss_pred             CCCCHHHHHHHhChHHHHHHHHhhCCCCCcCC-CCCccHHhHHHhcCChHHHHHHHhh
Q 047844          161 SGETPLYLAAARAHKEISAEILQKCPSPAHEG-PNGKTALHAAVCSRSCAASRCHKLH  217 (264)
Q Consensus       161 ~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~-~~g~tpl~~A~~~~~~~~~~~l~~~  217 (264)
                      +|+||||+|+.+++...+..|++.|+.+..+| .+|.||||+|+..|+..+++.+++-
T Consensus       177 ~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g  234 (600)
T KOG0509|consen  177 NGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEG  234 (600)
T ss_pred             CCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhhhc
Confidence            99999999999999998999999999999988 8999999999999999999944343

>PHA03095 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.7e-30  Score=225.23  Aligned_cols=207  Identities=17%  Similarity=0.125  Sum_probs=142.4

Q ss_pred             CcHHHHHHHcC---CchHHhhhhhhcccccccCCCCCchhHHHHHHhhh-cCcCCCcccHHHHHHHHHhCCccceecCCC
Q 047844            2 NSDLYEAAAKG---EIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYT-QNKEGESVSTKFVERIIEMCPSLLLQVNAK   77 (264)
Q Consensus         2 ~~~l~~A~~~g---~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g-~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~   77 (264)
                      .||||+|+..|   +.++++.|++.+...+..+..|.||||+|+  ..| .        .+++++|++.|.+ ++..+..
T Consensus        48 ~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~--~~~~~--------~~iv~lLl~~ga~-in~~~~~  116 (471)
T PHA03095         48 KTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYL--YNATT--------LDVIKLLIKAGAD-VNAKDKV  116 (471)
T ss_pred             CCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHH--HcCCc--------HHHHHHHHHcCCC-CCCCCCC
Confidence            46777777776   777777777733333446667777777777  777 5        6777777777776 6667777


Q ss_pred             CChHHHHHH--HhCCHHHHHHHHHHhhhcchhhhhh--------------------------------------------
Q 047844           78 GDAPLHVAA--RYGHAAVVEALIEIAKQESDQEIES--------------------------------------------  111 (264)
Q Consensus        78 g~t~L~~A~--~~g~~~~v~~Ll~~~~~~~~~~~~~--------------------------------------------  111 (264)
                      |+||||+|+  ..++.+++++|++.|++++..+..+                                            
T Consensus       117 g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~  196 (471)
T PHA03095        117 GRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQ  196 (471)
T ss_pred             CCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            777777777  3446677777777766554422110                                            


Q ss_pred             ---chhhHHHHH------hcCCCCCCCChhhHHHhcCCH--HHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHH
Q 047844          112 ---GVESTARHM------LGMKNDEEDTALHEAVQSGSL--DVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAE  180 (264)
Q Consensus       112 ---~~~~~~~~~------l~~~~~~g~t~L~~A~~~~~~--~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~  180 (264)
                         ........+      .+.+|..|.||||+|+..|+.  .+++.|++.|+++ +..|..|+||||+|+..|+.+++++
T Consensus       197 ~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~di-n~~d~~g~TpLh~A~~~~~~~~v~~  275 (471)
T PHA03095        197 SFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISI-NARNRYGQTPLHYAAVFNNPRACRR  275 (471)
T ss_pred             HCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHH
Confidence               000011111      245666777777777777653  5677777888875 6777888888888888888888888


Q ss_pred             HHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhCC
Q 047844          181 ILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSS  220 (264)
Q Consensus       181 Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~  220 (264)
                      |++.|++++.++..|.||+++|+..++.++++.++..++.
T Consensus       276 LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~  315 (471)
T PHA03095        276 LIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPS  315 (471)
T ss_pred             HHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCC
Confidence            8888888888888888888888888888888888776543

>PHA02946 ankyin-like protein; Provisional

Probab=99.97  E-value=2.4e-30  Score=220.71  Aligned_cols=204  Identities=11%  Similarity=0.087  Sum_probs=165.4

Q ss_pred             cHHHHHHH--cCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCCh
Q 047844            3 SDLYEAAA--KGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDA   80 (264)
Q Consensus         3 ~~l~~A~~--~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t   80 (264)
                      ++||.++.  .++.++++.|++.+...+..|.+|.||||+|+  ..|+        .+++++|++.|++ ++.+|..|.|
T Consensus        39 ~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa--~~g~--------~eiv~lLL~~GAd-in~~d~~g~T  107 (446)
T PHA02946         39 HILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIAS--KINN--------NRIVAMLLTHGAD-PNACDKQHKT  107 (446)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHH--HcCC--------HHHHHHHHHCcCC-CCCCCCCCCC
Confidence            57887764  44668999999844444458899999999999  9999        9999999999988 7889999999


Q ss_pred             HHHHHHHhC--CHHHHHHHHHHhhhcchhhhhh----------chhhHHHH------HhcCCCCCCCChhhHHHhcC--C
Q 047844           81 PLHVAARYG--HAAVVEALIEIAKQESDQEIES----------GVESTARH------MLGMKNDEEDTALHEAVQSG--S  140 (264)
Q Consensus        81 ~L~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~----------~~~~~~~~------~l~~~~~~g~t~L~~A~~~~--~  140 (264)
                      |||+|+..+  ..+++++|+++|++++......          +.......      .++.++..|.||||+|+..+  +
T Consensus       108 pLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~  187 (446)
T PHA02946        108 PLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPK  187 (446)
T ss_pred             HHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHHHHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCC
Confidence            999998766  4788999999998876422111          11222222      24678899999999998764  5


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhC--hHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCC-hHHHHHHHhh
Q 047844          141 LDVVKILLGADPAFPYSANGSGETPLYLAAARA--HKEISAEILQKCPSPAHEGPNGKTALHAAVCSRS-CAASRCHKLH  217 (264)
Q Consensus       141 ~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~--~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~-~~~~~~l~~~  217 (264)
                      .+++++|++.|+++ +.+|..|+||||+|+..+  +.+++++|+. |++++.+|..|.||||+|+..++ .++++.|+.+
T Consensus       188 ~~~v~~Ll~~Gadi-n~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~  265 (446)
T PHA02946        188 ASTISWMMKLGISP-SKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLST  265 (446)
T ss_pred             HHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhC
Confidence            79999999999996 788999999999999876  7889999885 89999999999999999999987 5788888877


Q ss_pred             hC
Q 047844          218 RS  219 (264)
Q Consensus       218 ~~  219 (264)
                      +.
T Consensus       266 g~  267 (446)
T PHA02946        266 SN  267 (446)
T ss_pred             CC
Confidence            64

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.97  E-value=7.2e-30  Score=221.82  Aligned_cols=207  Identities=23%  Similarity=0.197  Sum_probs=178.9

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHH-----HHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCC
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHV-----NIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNA   76 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~-----A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~   76 (264)
                      .||||.|+..|+.++++.|++.+...+..+..+.||||.     |+  ..|+        .+++++|++.|++ ++..+.
T Consensus        36 ~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~--~~~~--------~~iv~~Ll~~ga~-i~~~d~  104 (480)
T PHA03100         36 VLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYN--LTDV--------KEIVKLLLEYGAN-VNAPDN  104 (480)
T ss_pred             chhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHH--hhch--------HHHHHHHHHCCCC-CCCCCC
Confidence            379999999999999999999544444578889999999     99  9999        9999999999999 589999


Q ss_pred             CCChHHHHHH--HhCCHHHHHHHHHHhhhcchhhh----------hhc--hhhHHHHH------hcCCCCCCCChhhHHH
Q 047844           77 KGDAPLHVAA--RYGHAAVVEALIEIAKQESDQEI----------ESG--VESTARHM------LGMKNDEEDTALHEAV  136 (264)
Q Consensus        77 ~g~t~L~~A~--~~g~~~~v~~Ll~~~~~~~~~~~----------~~~--~~~~~~~~------l~~~~~~g~t~L~~A~  136 (264)
                      .|.||||+|+  ..|+.+++++|++.|++++..+.          ..+  .......+      ++.++..|.||||+|+
T Consensus       105 ~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~  184 (480)
T PHA03100        105 NGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAV  184 (480)
T ss_pred             CCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHH
Confidence            9999999999  99999999999999988755432          122  23333333      3557778999999999


Q ss_pred             hcCCHHHHHHHhcCCCCCCCCCCCCC------CCHHHHHHHhCh--HHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCCh
Q 047844          137 QSGSLDVVKILLGADPAFPYSANGSG------ETPLYLAAARAH--KEISAEILQKCPSPAHEGPNGKTALHAAVCSRSC  208 (264)
Q Consensus       137 ~~~~~~~~~~Ll~~g~~~~~~~~~~g------~t~Lh~A~~~~~--~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~  208 (264)
                      ..|+.+++++|++.|++. +..+..|      .||||.|+..++  .+++++|+++|++++.+|..|.||||+|+..++.
T Consensus       185 ~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~  263 (480)
T PHA03100        185 EKGNIDVIKFLLDNGADI-NAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNP  263 (480)
T ss_pred             HhCCHHHHHHHHHcCCCc-cCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            999999999999999985 5677777      899999999999  9999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhCC
Q 047844          209 AASRCHKLHRSS  220 (264)
Q Consensus       209 ~~~~~l~~~~~~  220 (264)
                      +++++|+..++.
T Consensus       264 ~iv~~Ll~~gad  275 (480)
T PHA03100        264 EFVKYLLDLGAN  275 (480)
T ss_pred             HHHHHHHHcCCC
Confidence            999999998874

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.97  E-value=2.1e-29  Score=218.92  Aligned_cols=191  Identities=14%  Similarity=0.064  Sum_probs=126.2

Q ss_pred             cHHHHHHHcCC------chHHhhhhhhcccccccCCCCCchhHHHHHHhh---hcCcCCCcccHHHHHHHHHhCCcccee
Q 047844            3 SDLYEAAAKGE------IEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASY---TQNKEGESVSTKFVERIIEMCPSLLLQ   73 (264)
Q Consensus         3 ~~l~~A~~~g~------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~---g~~~~~~~~~~~~~~~ll~~~~~~~~~   73 (264)
                      ||||.|+..+.      .++++.|++.+...+..|..|.||||.|+  ..   |+        .+++++|++.|+++.+.
T Consensus        71 tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~--~~~~~~~--------~eiv~~Ll~~Gadin~~  140 (494)
T PHA02989         71 TPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFI--YNSNINN--------CDMLRFLLSKGINVNDV  140 (494)
T ss_pred             CcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH--HhcccCc--------HHHHHHHHHCCCCcccc
Confidence            45555544332      34555555522222334555555555554  33   34        55555555555552145


Q ss_pred             cCCCCChHHHHHHHh--CCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhc----CCHHHHHHH
Q 047844           74 VNAKGDAPLHVAARY--GHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQS----GSLDVVKIL  147 (264)
Q Consensus        74 ~~~~g~t~L~~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~----~~~~~~~~L  147 (264)
                      .|..|+||||+|+..  ++.+++++|++.|+++...                .+..|.||||+|++.    ++.+++++|
T Consensus       141 ~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~----------------~~~~g~tpL~~a~~~~~~~~~~~iv~~L  204 (494)
T PHA02989        141 KNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEK----------------TSLYGLTPMNIYLRNDIDVISIKVIKYL  204 (494)
T ss_pred             cCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccc----------------ccccCCChHHHHHhcccccccHHHHHHH
Confidence            555555555555433  3455555555555553321                355677777777654    367777777


Q ss_pred             hcCCCCCC-------------------------------------CCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCc
Q 047844          148 LGADPAFP-------------------------------------YSANGSGETPLYLAAARAHKEISAEILQKCPSPAH  190 (264)
Q Consensus       148 l~~g~~~~-------------------------------------~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~  190 (264)
                      ++.|+++.                                     +.+|..|+||||+|+..++.+++++|++.|++++.
T Consensus       205 l~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~  284 (494)
T PHA02989        205 IKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYN  284 (494)
T ss_pred             HhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccc
Confidence            77766532                                     34566799999999999999999999999999999


Q ss_pred             CCCCCccHHhHHHhcCChHHHHHHHhhhC
Q 047844          191 EGPNGKTALHAAVCSRSCAASRCHKLHRS  219 (264)
Q Consensus       191 ~~~~g~tpl~~A~~~~~~~~~~~l~~~~~  219 (264)
                      +|..|.||||+|+..++.++++.++..+.
T Consensus       285 ~d~~G~TpL~~A~~~~~~~iv~~LL~~~p  313 (494)
T PHA02989        285 VSKDGDTVLTYAIKHGNIDMLNRILQLKP  313 (494)
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Confidence            99999999999999999999999987654

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=7.3e-30  Score=218.15  Aligned_cols=192  Identities=26%  Similarity=0.311  Sum_probs=170.7

Q ss_pred             CcHHHHHHHcCCchHHhhhhh-----hcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCc-------
Q 047844            2 NSDLYEAAAKGEIEPFNQLAI-----DRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPS-------   69 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~-----~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~-------   69 (264)
                      +.|+|.|+..|..++++.++.     .....+..+..|.||||.|+  ..|+        +++++.+++++..       
T Consensus       188 ~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAv--e~g~--------~e~lk~~L~n~~~~a~~~~~  257 (929)
T KOG0510|consen  188 NFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAV--EGGD--------IEMLKMCLQNGKKIADVQLD  257 (929)
T ss_pred             CchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhh--hcCC--------HHHHHHHHhCccccchhhhH
Confidence            568888888888888888887     23333446778999999999  9999        9999999996543       


Q ss_pred             -------cceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHH
Q 047844           70 -------LLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLD  142 (264)
Q Consensus        70 -------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~  142 (264)
                             .++..|.+|.||||+|++.|+.++++.|+..|++++.                 ++.++.||||.|+++|+.+
T Consensus       258 ~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~-----------------kn~d~~spLH~AA~yg~~n  320 (929)
T KOG0510|consen  258 AMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINS-----------------KNKDEESPLHFAAIYGRIN  320 (929)
T ss_pred             HHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccc-----------------cCCCCCCchHHHHHcccHH
Confidence                   2345688999999999999999999999999999665                 9999999999999999999


Q ss_pred             HHHHHhc-CCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCC---cCCCCCccHHhHHHhcCChHHHHHHHhhh
Q 047844          143 VVKILLG-ADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPA---HEGPNGKTALHAAVCSRSCAASRCHKLHR  218 (264)
Q Consensus       143 ~~~~Ll~-~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~---~~~~~g~tpl~~A~~~~~~~~~~~l~~~~  218 (264)
                      +++-|++ .|....+..|-.|.||||+|++.|+..+++.|++.|+...   ..|.+|.||||.|+.+|+..+|+.|+.+|
T Consensus       321 tv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~G  400 (929)
T KOG0510|consen  321 TVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHG  400 (929)
T ss_pred             HHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcC
Confidence            9999998 8887788999999999999999999999999999999887   45999999999999999999999999998


Q ss_pred             CC
Q 047844          219 SS  220 (264)
Q Consensus       219 ~~  220 (264)
                      +.
T Consensus       401 a~  402 (929)
T KOG0510|consen  401 AD  402 (929)
T ss_pred             Cc
Confidence            75

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.97  E-value=2.1e-29  Score=222.27  Aligned_cols=208  Identities=16%  Similarity=0.102  Sum_probs=160.7

Q ss_pred             CcHHHHHHH--cCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCC
Q 047844            2 NSDLYEAAA--KGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGD   79 (264)
Q Consensus         2 ~~~l~~A~~--~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~   79 (264)
                      .||||.|+.  .++.+++++|++.+...+..|..|.||||+|+  ..|+      ...+++++|++.|++ ++.+|..|+
T Consensus       178 ~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa--~~g~------~~~eIVklLLe~GAD-VN~kD~~G~  248 (764)
T PHA02716        178 YGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYL--ITGN------VCASVIKKIIELGGD-MDMKCVNGM  248 (764)
T ss_pred             CcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH--HcCC------CCHHHHHHHHHcCCC-CCCCCCCCC
Confidence            489999875  46789999999954444558999999999999  9885      005899999999999 889999999


Q ss_pred             hHHHHHH---HhCCHHHHHHHHHHhhhcchhh-----------hhhchhhHHHH------HhcCCCCCCCChhhHHHh--
Q 047844           80 APLHVAA---RYGHAAVVEALIEIAKQESDQE-----------IESGVESTARH------MLGMKNDEEDTALHEAVQ--  137 (264)
Q Consensus        80 t~L~~A~---~~g~~~~v~~Ll~~~~~~~~~~-----------~~~~~~~~~~~------~l~~~~~~g~t~L~~A~~--  137 (264)
                      ||||+|+   ..++.++++.+++.+.......           ...+.....+.      .++.+|..|+||||+|+.  
T Consensus       249 TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~  328 (764)
T PHA02716        249 SPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRH  328 (764)
T ss_pred             CHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHh
Confidence            9999875   3456677777665432211100           00111112222      245689999999999865  


Q ss_pred             cCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHH--------------hChHHHHHHHHhhCCCCCcCCCCCccHHhH--
Q 047844          138 SGSLDVVKILLGADPAFPYSANGSGETPLYLAAA--------------RAHKEISAEILQKCPSPAHEGPNGKTALHA--  201 (264)
Q Consensus       138 ~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~--------------~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~--  201 (264)
                      .++.+++++|++.|+++ +.+|..|+||||+|+.              .++.+++++|+++|++++.+|..|.||||.  
T Consensus       329 ~~~~eIVklLLe~GADI-N~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~  407 (764)
T PHA02716        329 NISTDIIKLLHEYGNDL-NEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYI  407 (764)
T ss_pred             CCCchHHHHHHHcCCCC-ccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHH
Confidence            46899999999999996 7899999999999875              368899999999999999999999999994  


Q ss_pred             --HHhcCChHHHHHHHhhhC
Q 047844          202 --AVCSRSCAASRCHKLHRS  219 (264)
Q Consensus       202 --A~~~~~~~~~~~l~~~~~  219 (264)
                        |...+..+++++|+..+.
T Consensus       408 ~~a~n~~~~dIvklLis~~~  427 (764)
T PHA02716        408 CTAQNYMYYDIIDCLISDKV  427 (764)
T ss_pred             HHHHhcChHHHHHHHHhCcc
Confidence              334577999999988653

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.97  E-value=3.2e-29  Score=217.16  Aligned_cols=158  Identities=18%  Similarity=0.172  Sum_probs=140.9

Q ss_pred             cCCC-CCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhh
Q 047844           30 VTHK-KNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQE  108 (264)
Q Consensus        30 ~~~~-g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~  108 (264)
                      .+.. |.||||+|+  ..|+        .+++++|++.+++ ++..|..|.||||+|+..|+.+++++|++.|++++.  
T Consensus       163 ~~~~~g~tpLh~A~--~~~~--------~~iv~~Ll~~gad-~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~--  229 (477)
T PHA02878        163 KDRHKGNTALHYAT--ENKD--------QRLTELLLSYGAN-VNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDA--  229 (477)
T ss_pred             cCCCCCCCHHHHHH--hCCC--------HHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC--
Confidence            4556 999999999  9999        9999999999999 788999999999999999999999999999988654  


Q ss_pred             hhhchhhHHHHHhcCCCCCCCChhhHHHhc-CCHHHHHHHhcCCCCCCCCCC-CCCCCHHHHHHHhChHHHHHHHHhhCC
Q 047844          109 IESGVESTARHMLGMKNDEEDTALHEAVQS-GSLDVVKILLGADPAFPYSAN-GSGETPLYLAAARAHKEISAEILQKCP  186 (264)
Q Consensus       109 ~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~~~-~~g~t~Lh~A~~~~~~~~~~~Ll~~ga  186 (264)
                                     ++..|.||||+|+.. ++.+++++|+++|+++ +..+ ..|.||||+|  .++.+++++|+++|+
T Consensus       230 ---------------~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadv-n~~~~~~g~TpLh~A--~~~~~~v~~Ll~~ga  291 (477)
T PHA02878        230 ---------------RDKCGNTPLHISVGYCKDYDILKLLLEHGVDV-NAKSYILGLTALHSS--IKSERKLKLLLEYGA  291 (477)
T ss_pred             ---------------CCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCC-CccCCCCCCCHHHHH--ccCHHHHHHHHHCCC
Confidence                           899999999999976 7999999999999997 4555 4799999999  467899999999999


Q ss_pred             CCCcCCCCCccHHhHHHhcC-ChHHHHHHHhhh
Q 047844          187 SPAHEGPNGKTALHAAVCSR-SCAASRCHKLHR  218 (264)
Q Consensus       187 ~~~~~~~~g~tpl~~A~~~~-~~~~~~~l~~~~  218 (264)
                      +++..|..|.|||++|+..+ ..++++.+....
T Consensus       292 din~~d~~g~TpL~~A~~~~~~~~~~~~li~~~  324 (477)
T PHA02878        292 DINSLNSYKLTPLSSAVKQYLCINIGRILISNI  324 (477)
T ss_pred             CCCCcCCCCCCHHHHHHHHcCccchHHHHHHHH
Confidence            99999999999999998753 556777665543

>PHA02798 ankyrin-like protein; Provisional

Probab=99.97  E-value=3e-29  Score=217.70  Aligned_cols=192  Identities=16%  Similarity=0.124  Sum_probs=148.4

Q ss_pred             CcHHHHHHHc-----CCchHHhhhhhhcccccccCCCCCchhHHHHHHhhh---cCcCCCcccHHHHHHHHHhCCcccee
Q 047844            2 NSDLYEAAAK-----GEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYT---QNKEGESVSTKFVERIIEMCPSLLLQ   73 (264)
Q Consensus         2 ~~~l~~A~~~-----g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g---~~~~~~~~~~~~~~~ll~~~~~~~~~   73 (264)
                      .||||.|+..     +..++++.|++.+...+..|..|.||||+|+  ..+   +        .+++++|++.|++ ++.
T Consensus        72 ~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~--~~~~~~~--------~~iv~~Ll~~Gad-vn~  140 (489)
T PHA02798         72 STPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLL--SNGYINN--------LEILLFMIENGAD-TTL  140 (489)
T ss_pred             CChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHH--HcCCcCh--------HHHHHHHHHcCCC-ccc
Confidence            4788877653     5678888888843334447778888888888  665   5        7888888888887 677


Q ss_pred             cCCCCChHHHHHHHhCC---HHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhc----CCHHHHHH
Q 047844           74 VNAKGDAPLHVAARYGH---AAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQS----GSLDVVKI  146 (264)
Q Consensus        74 ~~~~g~t~L~~A~~~g~---~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~----~~~~~~~~  146 (264)
                      .|..|.||||+|+..|+   .+++++|++.|++++..                .+..|.||||.++..    ++.+++++
T Consensus       141 ~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~----------------~~~~~~t~Lh~~~~~~~~~~~~~ivk~  204 (489)
T PHA02798        141 LDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTH----------------NNKEKYDTLHCYFKYNIDRIDADILKL  204 (489)
T ss_pred             cCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccc----------------cCcCCCcHHHHHHHhccccCCHHHHHH
Confidence            88888888888888776   78888888888775442                133566677666543    35666666


Q ss_pred             HhcCCCCC--------------------------------------CCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCC
Q 047844          147 LLGADPAF--------------------------------------PYSANGSGETPLYLAAARAHKEISAEILQKCPSP  188 (264)
Q Consensus       147 Ll~~g~~~--------------------------------------~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~  188 (264)
                      |+++|+++                                      .+.+|..|+||||+|+..++.+++++|++.|+++
T Consensus       205 Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdi  284 (489)
T PHA02798        205 FVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDI  284 (489)
T ss_pred             HHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcc
Confidence            66665432                                      2456778999999999999999999999999999


Q ss_pred             CcCCCCCccHHhHHHhcCChHHHHHHHhhhCC
Q 047844          189 AHEGPNGKTALHAAVCSRSCAASRCHKLHRSS  220 (264)
Q Consensus       189 ~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~  220 (264)
                      +.++..|.|||++|+.+++.++++.++.+++.
T Consensus       285 n~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~  316 (489)
T PHA02798        285 NIITELGNTCLFTAFENESKFIFNSILNKKPN  316 (489)
T ss_pred             cccCCCCCcHHHHHHHcCcHHHHHHHHccCCC
Confidence            99999999999999999999999999887654

>PHA02946 ankyin-like protein; Provisional

Probab=99.97  E-value=6.4e-29  Score=211.98  Aligned_cols=197  Identities=15%  Similarity=0.167  Sum_probs=154.4

Q ss_pred             HHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHH
Q 047844            4 DLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLH   83 (264)
Q Consensus         4 ~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~   83 (264)
                      +++.+...++.+.++.+++..     ....+.++||.++....++        .+++++|++.|.+ ++.+|..|.||||
T Consensus        12 sl~~~~~~~n~~~~~~~l~~~-----~~~g~~~~Lh~~~~~~~~~--------~~iv~~Ll~~Gad-vn~~d~~G~TpLh   77 (446)
T PHA02946         12 SLYAKYNSKNLDVFRNMLQAI-----EPSGNYHILHAYCGIKGLD--------ERFVEELLHRGYS-PNETDDDGNYPLH   77 (446)
T ss_pred             HHHHHHccCcHHHHHHHHhcc-----CCCCCChHHHHHHHhcCCC--------HHHHHHHHHCcCC-CCccCCCCCCHHH
Confidence            567788899999999999732     1223479999877112335        7899999999999 8899999999999


Q ss_pred             HHHHhCCHHHHHHHHHHhhhcchhhhhhch------------hhHHHHHh------c-CCCCCCCChhhHHHhcCCHHHH
Q 047844           84 VAARYGHAAVVEALIEIAKQESDQEIESGV------------ESTARHML------G-MKNDEEDTALHEAVQSGSLDVV  144 (264)
Q Consensus        84 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~------------~~~~~~~l------~-~~~~~g~t~L~~A~~~~~~~~~  144 (264)
                      +|+..|+.+++++|+++|++++..+.....            ......++      + ..+..|.|||| |+..|+.+++
T Consensus        78 ~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv  156 (446)
T PHA02946         78 IASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVF  156 (446)
T ss_pred             HHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHH
Confidence            999999999999999999998765332111            11122222      2 24677888886 5566888888


Q ss_pred             HHHhcCCCCCCCCCCCCCCCHHHHHHHhCh--HHHHHHHHhhCCCCCcCCCCCccHHhHHHhcC--ChHHHHHHHh
Q 047844          145 KILLGADPAFPYSANGSGETPLYLAAARAH--KEISAEILQKCPSPAHEGPNGKTALHAAVCSR--SCAASRCHKL  216 (264)
Q Consensus       145 ~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~--~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~--~~~~~~~l~~  216 (264)
                      ++|++.|+++ +.+|..|+||||.|+..++  .+++++|++.|++++.+|..|.||||+|+..+  +.+++++|+.
T Consensus       157 ~~Ll~~gad~-~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~  231 (446)
T PHA02946        157 KKIMSIGFEA-RIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP  231 (446)
T ss_pred             HHHHhccccc-cccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc
Confidence            8888888885 6788899999998877554  68899999999999999999999999999875  7788888764

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=1e-29  Score=205.53  Aligned_cols=184  Identities=19%  Similarity=0.154  Sum_probs=166.7

Q ss_pred             cHHHHHHHcCCchHHhhhhh----hccc-----ccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCcccee
Q 047844            3 SDLYEAAAKGEIEPFNQLAI----DRQL-----GSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ   73 (264)
Q Consensus         3 ~~l~~A~~~g~~~~~~~l~~----~~~~-----~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~   73 (264)
                      |||.+||++|+.++|++|++    ++..     -+.....|-+||-.|+  ..|+        +++||.|++.+++ +|.
T Consensus        44 tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAs--aAGH--------l~vVk~L~~~ga~-VN~  112 (615)
T KOG0508|consen   44 TPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAAS--AAGH--------LEVVKLLLRRGAS-VND  112 (615)
T ss_pred             CceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHh--ccCc--------HHHHHHHHHhcCc-ccc
Confidence            79999999999999999999    1111     1113556889999999  9999        9999999999988 788


Q ss_pred             cCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCC
Q 047844           74 VNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPA  153 (264)
Q Consensus        74 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~  153 (264)
                      ....+.|||.-||.-|+.+++++|+++|+++..                 .|+.|.|.|++||..|+.+++++|++.|++
T Consensus       113 tT~TNStPLraACfDG~leivKyLvE~gad~~I-----------------anrhGhTcLmIa~ykGh~~I~qyLle~gAD  175 (615)
T KOG0508|consen  113 TTRTNSTPLRAACFDGHLEIVKYLVEHGADPEI-----------------ANRHGHTCLMIACYKGHVDIAQYLLEQGAD  175 (615)
T ss_pred             ccccCCccHHHHHhcchhHHHHHHHHcCCCCcc-----------------cccCCCeeEEeeeccCchHHHHHHHHhCCC
Confidence            888888999999999999999999999999655                 999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHh
Q 047844          154 FPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKL  216 (264)
Q Consensus       154 ~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~  216 (264)
                      + +.++..|+|+||.++..|+.+++++|+.+|+.++ +|.+|.|||..|+..|..++|.+|+.
T Consensus       176 v-n~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~-~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  176 V-NAKSYKGNTALHDCAESGSVDIVQLLLKHGAKID-VDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             c-chhcccCchHHHhhhhcccHHHHHHHHhCCceee-ecCCCCchHHHHhhhcchHHHHHHhc
Confidence            6 8999999999999999999999999999998877 45569999999999999999999975

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.96  E-value=3.8e-28  Score=218.88  Aligned_cols=206  Identities=16%  Similarity=0.134  Sum_probs=130.4

Q ss_pred             HHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccH-HHHHHHHHhCCccceecCCCCChHH
Q 047844            4 DLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVST-KFVERIIEMCPSLLLQVNAKGDAPL   82 (264)
Q Consensus         4 ~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~-~~~~~ll~~~~~~~~~~~~~g~t~L   82 (264)
                      +|+.|+..++.+.++.|++.+...+..+..|.||||+|+  ..|+        . +++++|++.+.+ ++..|..|.|||
T Consensus       243 ~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa--~~~~--------~~~iv~lLl~~gad-in~~d~~g~TpL  311 (682)
T PHA02876        243 SLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHAS--QAPS--------LSRLVPKLLERGAD-VNAKNIKGETPL  311 (682)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH--hCCC--------HHHHHHHHHHCCCC-CCCcCCCCCCHH
Confidence            444555555555555555422222223444555555555  4444        3 344444444444 444445555555


Q ss_pred             HHHHHhC-CHHHHHHHHHHhhhcchhhhhh-----------chhhHHH------HHhcCCCCCCCChhhHHHhcCCHHHH
Q 047844           83 HVAARYG-HAAVVEALIEIAKQESDQEIES-----------GVESTAR------HMLGMKNDEEDTALHEAVQSGSLDVV  144 (264)
Q Consensus        83 ~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~-----------~~~~~~~------~~l~~~~~~g~t~L~~A~~~~~~~~~  144 (264)
                      |+|+..| +.++++.|+..|++++..+...           +......      ..++.++..|.||||+|+..|+.+++
T Consensus       312 h~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv  391 (682)
T PHA02876        312 YLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVII  391 (682)
T ss_pred             HHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHH
Confidence            5555544 3455555555544443322110           0000111      11355888899999999999999999


Q ss_pred             HHHhcCCCCCCCCCCCCCCCHHHHHHHhCh-HHHHHHHHhhCCCCCcCCCCCccHHhHHHhcC-ChHHHHHHHhhhCCC
Q 047844          145 KILLGADPAFPYSANGSGETPLYLAAARAH-KEISAEILQKCPSPAHEGPNGKTALHAAVCSR-SCAASRCHKLHRSSR  221 (264)
Q Consensus       145 ~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~-~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~-~~~~~~~l~~~~~~~  221 (264)
                      ++|++.|+++ +..+..|.||||+|+..+. ..++++|++.|++++.+|..|+||||+|+..+ +.+++++|+..++..
T Consensus       392 ~~Ll~~gad~-~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~  469 (682)
T PHA02876        392 NTLLDYGADI-EALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADV  469 (682)
T ss_pred             HHHHHCCCCc-cccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCC
Confidence            9999999985 6778889999999987654 56788999999999999999999999998866 689999998887653

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.96  E-value=3.7e-28  Score=218.90  Aligned_cols=190  Identities=18%  Similarity=0.166  Sum_probs=122.7

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCc------------
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPS------------   69 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~------------   69 (264)
                      .||||+||..|+.+++++|++.+...+..+..|.||||.|+  ..|+        .+++++|++.+.+            
T Consensus       179 ~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~--~~~~--------~~ivk~Ll~~~~~~~~~~~~L~~ai  248 (682)
T PHA02876        179 ITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAV--DSKN--------IDTIKAIIDNRSNINKNDLSLLKAI  248 (682)
T ss_pred             CCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHH--HcCC--------HHHHHHHHhcCCCCCCCcHHHHHHH
Confidence            48999999999999999999944333447888999999999  9888        7777776654432            


Q ss_pred             ----------------cceecCCCCChHHHHHHHhCCH-HHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChh
Q 047844           70 ----------------LLLQVNAKGDAPLHVAARYGHA-AVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTAL  132 (264)
Q Consensus        70 ----------------~~~~~~~~g~t~L~~A~~~g~~-~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L  132 (264)
                                      .++..+..|.||||+|+..|+. +++++|++.|++++.                 ++..|.|||
T Consensus       249 ~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~-----------------~d~~g~TpL  311 (682)
T PHA02876        249 RNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNA-----------------KNIKGETPL  311 (682)
T ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCC-----------------cCCCCCCHH
Confidence                            1456677899999999999986 689999999988655                 444455555


Q ss_pred             hHHHhcC-CHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHh-ChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHH
Q 047844          133 HEAVQSG-SLDVVKILLGADPAFPYSANGSGETPLYLAAAR-AHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAA  210 (264)
Q Consensus       133 ~~A~~~~-~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~-~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~  210 (264)
                      |+|+..| ..+++++|+..|+++ +..|..|.||||+|+.. ++.++++.|++.|++++.+|..|.||||+|+..++.++
T Consensus       312 h~Aa~~g~~~~~v~~Ll~~gadi-n~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~i  390 (682)
T PHA02876        312 YLMAKNGYDTENIRTLIMLGADV-NAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVI  390 (682)
T ss_pred             HHHHHhCCCHHHHHHHHHcCCCC-CCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHH
Confidence            5555544 344555555555443 34444455555554442 23444444555555555555555555555555555555


Q ss_pred             HHHHHhhhC
Q 047844          211 SRCHKLHRS  219 (264)
Q Consensus       211 ~~~l~~~~~  219 (264)
                      +++|+.+++
T Consensus       391 v~~Ll~~ga  399 (682)
T PHA02876        391 INTLLDYGA  399 (682)
T ss_pred             HHHHHHCCC
Confidence            555544443

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=1.9e-28  Score=209.50  Aligned_cols=207  Identities=22%  Similarity=0.210  Sum_probs=154.9

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChH
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAP   81 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~   81 (264)
                      ++|+|+|+..|+.++++.|++.+-..+..|++|.||||.||  ..++        .|..+.|++.+++ +.+.|.+|++|
T Consensus       122 ~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~--~~~~--------~E~~k~Li~~~a~-~~K~~~~~~~~  190 (929)
T KOG0510|consen  122 NAPLHLAADSGNYSCLKLLLDYGADVNLEDENGFTPLHLAA--RKNK--------VEAKKELINKGAD-PCKSDIDGNFP  190 (929)
T ss_pred             cCchhhccccchHHHHHHHHHhcCCccccccCCCchhhHHH--hcCh--------HHHHHHHHhcCCC-CCcccCcCCch
Confidence            46777777777777777777722222336777777777777  7777        6666666666666 45556666666


Q ss_pred             HHHHHHhCCHHHHHHHHH--------------------------------------HhhhcchhhhhhchhhHHHHHhcC
Q 047844           82 LHVAARYGHAAVVEALIE--------------------------------------IAKQESDQEIESGVESTARHMLGM  123 (264)
Q Consensus        82 L~~A~~~g~~~~v~~Ll~--------------------------------------~~~~~~~~~~~~~~~~~~~~~l~~  123 (264)
                      +|.|+..|..++.+.++.                                      .|+.....  ..+...-...+++.
T Consensus       191 iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~--~~~~~~q~kelv~~  268 (929)
T KOG0510|consen  191 IHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADV--QLDAMQQEKELVND  268 (929)
T ss_pred             HHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchh--hhHHHHHHHHHhhc
Confidence            666666655555555555                                      33322211  01122234567889


Q ss_pred             CCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHh-hC-CCCCcCCCCCccHHhH
Q 047844          124 KNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQ-KC-PSPAHEGPNGKTALHA  201 (264)
Q Consensus       124 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~-~g-a~~~~~~~~g~tpl~~  201 (264)
                      .|.+|.||||+|++.|+++.+..|+..|+++ +.++.++.||||.|++.|+..+++-|++ .+ ..++..|..|.||||+
T Consensus       269 ~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I-~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHl  347 (929)
T KOG0510|consen  269 EDNDGCTPLHYAARQGGPESVDNLLGFGASI-NSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHL  347 (929)
T ss_pred             ccccCCchHHHHHHcCChhHHHHHHHcCCcc-cccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhh
Confidence            9999999999999999999999999999996 7899999999999999999999999998 54 5678899999999999


Q ss_pred             HHhcCChHHHHHHHhhhCCCC
Q 047844          202 AVCSRSCAASRCHKLHRSSRF  222 (264)
Q Consensus       202 A~~~~~~~~~~~l~~~~~~~~  222 (264)
                      |+++|+.++++.|+..++...
T Consensus       348 aa~~gH~~v~qlLl~~GA~~~  368 (929)
T KOG0510|consen  348 AAKSGHDRVVQLLLNKGALFL  368 (929)
T ss_pred             hhhcCHHHHHHHHHhcChhhh
Confidence            999999999999999887543

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=4.3e-29  Score=209.08  Aligned_cols=175  Identities=21%  Similarity=0.223  Sum_probs=158.3

Q ss_pred             cHHHHHHHcCCchHHhhhhhhcccccccC-CCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChH
Q 047844            3 SDLYEAAAKGEIEPFNQLAIDRQLGSLVT-HKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAP   81 (264)
Q Consensus         3 ~~l~~A~~~g~~~~~~~l~~~~~~~~~~~-~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~   81 (264)
                      ++||.||.+++++++++|++.+...+... .-+.||||+|+  +.|+        ..+++.|+++|++ ++.+|..|.+|
T Consensus        80 tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAa--r~G~--------~~vv~lLlqhGAd-pt~~D~~G~~~  148 (600)
T KOG0509|consen   80 TLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAA--RNGH--------ISVVDLLLQHGAD-PTLKDKQGLTP  148 (600)
T ss_pred             cceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHH--HcCc--------HHHHHHHHHcCCC-CceecCCCCcH
Confidence            68999999999999999999433333355 56889999999  9999        9999999999999 89999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCC
Q 047844           82 LHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGS  161 (264)
Q Consensus        82 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~  161 (264)
                      ||+|++.|+.-++-+|+.++++++                 .+|.+|.||||+|+.+|....++.|++-|+.+.-..|..
T Consensus       149 lHla~~~~~~~~vayll~~~~d~d-----------------~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~  211 (600)
T KOG0509|consen  149 LHLAAQFGHTALVAYLLSKGADID-----------------LRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNH  211 (600)
T ss_pred             HHHHHHhCchHHHHHHHHhcccCC-----------------CcCCCCCCHHHHHHHhcccHHHHHHHHhccccccccccc
Confidence            999999999999999999997754                 499999999999999999888999999999975444589


Q ss_pred             CCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhc
Q 047844          162 GETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCS  205 (264)
Q Consensus       162 g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~  205 (264)
                      |.||||+|+..|+..++..+++.|++.+..|.+|.||+++|...
T Consensus       212 g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  212 GNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             CCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            99999999999999999977788899999999999999999777

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.96  E-value=4.5e-28  Score=213.85  Aligned_cols=185  Identities=15%  Similarity=0.102  Sum_probs=157.5

Q ss_pred             HcCCchHHhhhhhhc-cccccc-CCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHH
Q 047844           10 AKGEIEPFNQLAIDR-QLGSLV-THKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAAR   87 (264)
Q Consensus        10 ~~g~~~~~~~l~~~~-~~~~~~-~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~   87 (264)
                      ..++.+++++|++.+ -..+.. +..|.||||.|+-+..++        .+++++|++.|++ ++.+|..|.||||+|+.
T Consensus       151 ~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~--------~eIVklLLe~GAD-VN~kD~~G~TPLH~Aa~  221 (764)
T PHA02716        151 RGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVD--------IDILEWLCNNGVN-VNLQNNHLITPLHTYLI  221 (764)
T ss_pred             cCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCC--------HHHHHHHHHcCCC-CCCCCCCCCCHHHHHHH
Confidence            468999999999954 333445 888999999987223467        8999999999999 88999999999999999


Q ss_pred             hCC--HHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHH------------------------------
Q 047844           88 YGH--AAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEA------------------------------  135 (264)
Q Consensus        88 ~g~--~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A------------------------------  135 (264)
                      .|+  .+++++|+++|++++.                 ++..|.||||.|                              
T Consensus       222 ~g~~~~eIVklLLe~GADVN~-----------------kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~  284 (764)
T PHA02716        222 TGNVCASVIKKIIELGGDMDM-----------------KCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMI  284 (764)
T ss_pred             cCCCCHHHHHHHHHcCCCCCC-----------------CCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhh
Confidence            995  5999999999999765                 677777777754                              


Q ss_pred             -------HhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHH--hChHHHHHHHHhhCCCCCcCCCCCccHHhHHHh--
Q 047844          136 -------VQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAA--RAHKEISAEILQKCPSPAHEGPNGKTALHAAVC--  204 (264)
Q Consensus       136 -------~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~--~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~--  204 (264)
                             ++.|+.+++++|++.|+++ +.+|..|+||||+|+.  .++.+++++|+++|++++.+|..|+||||+|+.  
T Consensus       285 L~~~i~AA~~g~leiVklLLe~GAdI-N~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~l  363 (764)
T PHA02716        285 LHSYITLARNIDISVVYSFLQPGVKL-HYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSML  363 (764)
T ss_pred             hHHHHHHHHcCCHHHHHHHHhCCCce-eccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhh
Confidence                   4568899999999999996 7889999999999864  457899999999999999999999999999865  


Q ss_pred             ------------cCChHHHHHHHhhhCCC
Q 047844          205 ------------SRSCAASRCHKLHRSSR  221 (264)
Q Consensus       205 ------------~~~~~~~~~l~~~~~~~  221 (264)
                                  .++.+++++|+.+++..
T Consensus       364 av~~~ld~~~~~~~~~eVVklLL~~GADI  392 (764)
T PHA02716        364 SVVNILDPETDNDIRLDVIQCLISLGADI  392 (764)
T ss_pred             hhhccccccccccChHHHHHHHHHCCCCC
Confidence                        36899999999998753

>PHA02795 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.4e-27  Score=198.29  Aligned_cols=190  Identities=13%  Similarity=0.064  Sum_probs=160.9

Q ss_pred             HHHHcCCchHHhhhhhhccccc------ccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCCh
Q 047844            7 EAAAKGEIEPFNQLAIDRQLGS------LVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDA   80 (264)
Q Consensus         7 ~A~~~g~~~~~~~l~~~~~~~~------~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t   80 (264)
                      +|+..+..|+++.|+..+...+      ..+..+.|+||.++-+..|+        .+++++|+++|++ ++.  .++.|
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~--------~eiV~~LI~~GAD-In~--~~~~t  151 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVE--------IDIVDFMVDHGAV-IYK--IECLN  151 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCC--------HHHHHHHHHCCCC-CCC--CCCCC
Confidence            7889999999999999332222      36778999999999222888        9999999999999 555  35589


Q ss_pred             HHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCC
Q 047844           81 PLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANG  160 (264)
Q Consensus        81 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  160 (264)
                      |||.|+..++.+++++|+++|+......           ..+..+..+.+++|.|+..++.+++++|++.|+++ +.+|.
T Consensus       152 ~lh~A~~~~~~eIVk~Lls~Ga~~~n~~-----------~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADI-N~kD~  219 (437)
T PHA02795        152 AYFRGICKKESSVVEFILNCGIPDENDV-----------KLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDI-NQLDA  219 (437)
T ss_pred             HHHHHHHcCcHHHHHHHHhcCCcccccc-----------cchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCc-CcCCC
Confidence            9999999999999999999997532210           01112245779999999999999999999999996 78999


Q ss_pred             CCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCC--------hHHHHHHHhhhC
Q 047844          161 SGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRS--------CAASRCHKLHRS  219 (264)
Q Consensus       161 ~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~--------~~~~~~l~~~~~  219 (264)
                      .|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+        .++++.|+.+++
T Consensus       220 ~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~ga  286 (437)
T PHA02795        220 GGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPL  286 (437)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999884        689999988765

>PHA02798 ankyrin-like protein; Provisional

Probab=99.96  E-value=2.3e-27  Score=205.96  Aligned_cols=191  Identities=14%  Similarity=0.055  Sum_probs=160.8

Q ss_pred             cHHHHHHH--cCCchHHhhhhhhcccccccCCCCCchhHHHHHHhh-----hcCcCCCcccHHHHHHHHHhCCccceecC
Q 047844            3 SDLYEAAA--KGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASY-----TQNKEGESVSTKFVERIIEMCPSLLLQVN   75 (264)
Q Consensus         3 ~~l~~A~~--~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~-----g~~~~~~~~~~~~~~~ll~~~~~~~~~~~   75 (264)
                      |+++.+..  .++.++++.|++.+...+..+..|.||||.|+  ..     +.        .+++++|++.|++ ++..|
T Consensus        38 ~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~--~n~~~~~~~--------~~iv~~Ll~~Gad-iN~~d  106 (489)
T PHA02798         38 SIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTIL--SNIKDYKHM--------LDIVKILIENGAD-INKKN  106 (489)
T ss_pred             hHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHH--HhHHhHHhH--------HHHHHHHHHCCCC-CCCCC
Confidence            44543333  45789999999954454558999999999988  54     67        8999999999999 89999


Q ss_pred             CCCChHHHHHHHhC---CHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCC---HHHHHHHhc
Q 047844           76 AKGDAPLHVAARYG---HAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGS---LDVVKILLG  149 (264)
Q Consensus        76 ~~g~t~L~~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~---~~~~~~Ll~  149 (264)
                      ..|.||||+|+..+   +.+++++|+++|++++.                 ++..|.||||+|++.++   .+++++|++
T Consensus       107 ~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~-----------------~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~  169 (489)
T PHA02798        107 SDGETPLYCLLSNGYINNLEILLFMIENGADTTL-----------------LDKDGFTMLQVYLQSNHHIDIEIIKLLLE  169 (489)
T ss_pred             CCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccc-----------------cCCCCCcHHHHHHHcCCcchHHHHHHHHH
Confidence            99999999999986   78999999999998655                 89999999999999988   999999999


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHhC----hHHHHHHHHhhCCC--------------------------------------
Q 047844          150 ADPAFPYSANGSGETPLYLAAARA----HKEISAEILQKCPS--------------------------------------  187 (264)
Q Consensus       150 ~g~~~~~~~~~~g~t~Lh~A~~~~----~~~~~~~Ll~~ga~--------------------------------------  187 (264)
                      .|+++....+..|.||||.++..+    +.+++++|+++|++                                      
T Consensus       170 ~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~  249 (489)
T PHA02798        170 KGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYI  249 (489)
T ss_pred             hCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcC
Confidence            999974333567999999987643    67888888877754                                      


Q ss_pred             -CCcCCCCCccHHhHHHhcCChHHHHHHHhhhCCC
Q 047844          188 -PAHEGPNGKTALHAAVCSRSCAASRCHKLHRSSR  221 (264)
Q Consensus       188 -~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~  221 (264)
                       ++.+|..|.||||+|+.+++.+++++|+..++..
T Consensus       250 dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdi  284 (489)
T PHA02798        250 DINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDI  284 (489)
T ss_pred             CCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcc
Confidence             4556778999999999999999999999998763

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.95  E-value=2.9e-27  Score=205.60  Aligned_cols=197  Identities=15%  Similarity=0.072  Sum_probs=158.3

Q ss_pred             CcHHHHHHHcC--CchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCC
Q 047844            2 NSDLYEAAAKG--EIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGD   79 (264)
Q Consensus         2 ~~~l~~A~~~g--~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~   79 (264)
                      .||||.++..+  +.++++.|++.+...+..+ .+.||||.|+  ..+..  ...-..+++++|++.|++ ++.+|..|.
T Consensus        36 ~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~--~~~~~--~~~~~~~iv~~Ll~~Gad-in~~d~~g~  109 (494)
T PHA02989         36 NSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVL--RNREI--TSNKIKKIVKLLLKFGAD-INLKTFNGV  109 (494)
T ss_pred             CCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHH--hccCc--chhhHHHHHHHHHHCCCC-CCCCCCCCC
Confidence            46787666543  6899999999433333244 5789999988  64320  000017899999999999 899999999


Q ss_pred             hHHHHHHHh---CCHHHHHHHHHHhhhc-chhhhhhchhhHHHHHhcCCCCCCCChhhHHHhc--CCHHHHHHHhcCCCC
Q 047844           80 APLHVAARY---GHAAVVEALIEIAKQE-SDQEIESGVESTARHMLGMKNDEEDTALHEAVQS--GSLDVVKILLGADPA  153 (264)
Q Consensus        80 t~L~~A~~~---g~~~~v~~Ll~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~--~~~~~~~~Ll~~g~~  153 (264)
                      ||||.|+..   |+.+++++|+++|+++ +.                 ++..|.||||+|+..  ++.+++++|++.|++
T Consensus       110 tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~-----------------~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gad  172 (494)
T PHA02989        110 SPIVCFIYNSNINNCDMLRFLLSKGINVNDV-----------------KNSRGYNLLHMYLESFSVKKDVIKILLSFGVN  172 (494)
T ss_pred             cHHHHHHHhcccCcHHHHHHHHHCCCCcccc-----------------cCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC
Confidence            999988765   6789999999999986 43                 889999999998764  689999999999999


Q ss_pred             CCCCCCCCCCCHHHHHHHhC----hHHHHHHHHhhCCCCCc--------------------------------------C
Q 047844          154 FPYSANGSGETPLYLAAARA----HKEISAEILQKCPSPAH--------------------------------------E  191 (264)
Q Consensus       154 ~~~~~~~~g~t~Lh~A~~~~----~~~~~~~Ll~~ga~~~~--------------------------------------~  191 (264)
                      +....+..|.||||+|++.+    +.+++++|+++|++++.                                      +
T Consensus       173 i~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~  252 (494)
T PHA02989        173 LFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKK  252 (494)
T ss_pred             ccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCC
Confidence            74336789999999998764    88999999998877654                                      4


Q ss_pred             CCCCccHHhHHHhcCChHHHHHHHhhhCCC
Q 047844          192 GPNGKTALHAAVCSRSCAASRCHKLHRSSR  221 (264)
Q Consensus       192 ~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~  221 (264)
                      |..|+||||+|+..++.+++++|+..++..
T Consensus       253 d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadi  282 (494)
T PHA02989        253 DKKGFNPLLISAKVDNYEAFNYLLKLGDDI  282 (494)
T ss_pred             CCCCCCHHHHHHHhcCHHHHHHHHHcCCCc
Confidence            556999999999999999999999998753

>PHA03095 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.4e-26  Score=200.78  Aligned_cols=184  Identities=17%  Similarity=0.152  Sum_probs=122.9

Q ss_pred             HHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhh---cCcCCCcccHHHHHHHHHhCCccceecCCCCChHH
Q 047844            6 YEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYT---QNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPL   82 (264)
Q Consensus         6 ~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g---~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L   82 (264)
                      ..++..++++++++|++.+...+..+..|.||||.|+  ..|   +        .+++++|++.|++ ++..+..|.|||
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~vn~~~~~g~t~Lh~a~--~~~~~~~--------~~iv~~Ll~~Gad-in~~~~~g~TpL   87 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYL--HYSSEKV--------KDIVRLLLEAGAD-VNAPERCGFTPL   87 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCCcccCCCCCCCHHHHHH--HhcCCCh--------HHHHHHHHHCCCC-CCCCCCCCCCHH
Confidence            4567789999999999944444558999999999999  988   8        9999999999999 889999999999


Q ss_pred             HHHHHhC-CHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHH--hcCCHHHHHHHhcCCCCCCCCCC
Q 047844           83 HVAARYG-HAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAV--QSGSLDVVKILLGADPAFPYSAN  159 (264)
Q Consensus        83 ~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~--~~~~~~~~~~Ll~~g~~~~~~~~  159 (264)
                      |+|+..| +.+++++|++.|++++.                 ++..|.||||+|+  ..++.+++++|++.|+++ +..|
T Consensus        88 h~A~~~~~~~~iv~lLl~~ga~in~-----------------~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~-~~~d  149 (471)
T PHA03095         88 HLYLYNATTLDVIKLLIKAGADVNA-----------------KDKVGRTPLHVYLSGFNINPKVIRLLLRKGADV-NALD  149 (471)
T ss_pred             HHHHHcCCcHHHHHHHHHcCCCCCC-----------------CCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCC-CccC
Confidence            9999999 59999999999998665                 4444555555554  223444555555555443 3444


Q ss_pred             CCCCCHHHHHHHhC--hHHHHHHHHhhCCCCCcCCCCCccHHhHHHhc--CChHHHHHHHhhh
Q 047844          160 GSGETPLYLAAARA--HKEISAEILQKCPSPAHEGPNGKTALHAAVCS--RSCAASRCHKLHR  218 (264)
Q Consensus       160 ~~g~t~Lh~A~~~~--~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~--~~~~~~~~l~~~~  218 (264)
                      ..|.||||+|+..+  +.+++++|+++|++++..+..|.||||+|+..  ++.++++.|+..+
T Consensus       150 ~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g  212 (471)
T PHA03095        150 LYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAG  212 (471)
T ss_pred             CCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcC
Confidence            44555555444433  34444444444444444444444444444432  3344444444333

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.95  E-value=8.6e-27  Score=213.02  Aligned_cols=174  Identities=18%  Similarity=0.177  Sum_probs=154.4

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChH
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAP   81 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~   81 (264)
                      .++|+.||..|+.++++.|++.+...+..|.+|.||||+|+  ..|+        .+++++|++.+.+ ++.+|.+|+||
T Consensus       526 ~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa--~~g~--------~~~v~~Ll~~gad-in~~d~~G~Tp  594 (823)
T PLN03192        526 ASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAA--SKGY--------EDCVLVLLKHACN-VHIRDANGNTA  594 (823)
T ss_pred             hhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH--HcCh--------HHHHHHHHhcCCC-CCCcCCCCCCH
Confidence            57899999999999999999843334448999999999999  9999        9999999999988 78899999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCC
Q 047844           82 LHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGS  161 (264)
Q Consensus        82 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~  161 (264)
                      ||+|+..|+.+++++|++.++..                   ....+.++||.|+..|+.+++++|+++|+++ +.+|..
T Consensus       595 L~~A~~~g~~~iv~~L~~~~~~~-------------------~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadi-n~~d~~  654 (823)
T PLN03192        595 LWNAISAKHHKIFRILYHFASIS-------------------DPHAAGDLLCTAAKRNDLTAMKELLKQGLNV-DSEDHQ  654 (823)
T ss_pred             HHHHHHhCCHHHHHHHHhcCccc-------------------CcccCchHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCC
Confidence            99999999999999999766542                   2345778999999999999999999999996 788999


Q ss_pred             CCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCC-ccHHhHHHhcC
Q 047844          162 GETPLYLAAARAHKEISAEILQKCPSPAHEGPNG-KTALHAAVCSR  206 (264)
Q Consensus       162 g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g-~tpl~~A~~~~  206 (264)
                      |+||||+|+..|+.+++++|+++|++++..|..| .+|.+++....
T Consensus       655 G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        655 GATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRELLQ  700 (823)
T ss_pred             CCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHHH
Confidence            9999999999999999999999999999999888 89988875543

>PHA02917 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.2e-26  Score=205.43  Aligned_cols=188  Identities=13%  Similarity=0.053  Sum_probs=140.4

Q ss_pred             CcHHHHHHHc---CCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCC
Q 047844            2 NSDLYEAAAK---GEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKG   78 (264)
Q Consensus         2 ~~~l~~A~~~---g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g   78 (264)
                      +||||+|+..   |+.+++++|++.+......+.+|+||||+|+  ..|+    ..+..++++.|++.+.. .+..+  .
T Consensus        33 ~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa--~~g~----~~v~~~~~~~Ll~~~~~-~n~~~--~  103 (661)
T PHA02917         33 NNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYT--NSRH----VKVNKDIAMALLEATGY-SNIND--F  103 (661)
T ss_pred             CcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHH--HcCC----hhHHHHHHHHHHhccCC-CCCCC--c
Confidence            4788886554   7788888888733333346777888888888  7776    01112344566665433 22222  2


Q ss_pred             ChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHH--hcCCHHHHHHHhcCCCCCCC
Q 047844           79 DAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAV--QSGSLDVVKILLGADPAFPY  156 (264)
Q Consensus        79 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~--~~~~~~~~~~Ll~~g~~~~~  156 (264)
                      .+++++|+..|+.+++++|+++|++++.                 ++..|.||||.++  ..|+.+++++|+++|+++ +
T Consensus       104 ~~~~~~a~~~~~~e~vk~Ll~~Gadin~-----------------~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~v-n  165 (661)
T PHA02917        104 NIFSYMKSKNVDVDLIKVLVEHGFDLSV-----------------KCENHRSVIENYVMTDDPVPEIIDLFIENGCSV-L  165 (661)
T ss_pred             chHHHHHhhcCCHHHHHHHHHcCCCCCc-----------------cCCCCccHHHHHHHccCCCHHHHHHHHHcCCCc-c
Confidence            3566777777788888888888887554                 8999999999654  568999999999999996 3


Q ss_pred             CCC---CCC-----------CCHHHHHHH-----------hChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCCh--H
Q 047844          157 SAN---GSG-----------ETPLYLAAA-----------RAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSC--A  209 (264)
Q Consensus       157 ~~~---~~g-----------~t~Lh~A~~-----------~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~--~  209 (264)
                      .+|   ..|           .||||+|+.           .++.+++++|+++|++++.+|.+|.||||+|+.+++.  +
T Consensus       166 ~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~e  245 (661)
T PHA02917        166 YEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDID  245 (661)
T ss_pred             ccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHH
Confidence            333   233           599999986           4588999999999999999999999999999999985  7


Q ss_pred             HHHHHHh
Q 047844          210 ASRCHKL  216 (264)
Q Consensus       210 ~~~~l~~  216 (264)
                      ++++|..
T Consensus       246 ivk~Li~  252 (661)
T PHA02917        246 IVKLLMK  252 (661)
T ss_pred             HHHHHHh
Confidence            9999864

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=3.9e-26  Score=176.29  Aligned_cols=159  Identities=13%  Similarity=0.119  Sum_probs=139.9

Q ss_pred             cCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhC--CHHHHHHHHHHhhhcchh
Q 047844           30 VTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYG--HAAVVEALIEIAKQESDQ  107 (264)
Q Consensus        30 ~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~~~~~~~~  107 (264)
                      ..+.++||||.|+  ..|+        .++++.|++.    .+..+..|.||||+|+..+  +.+++++|++.|++++. 
T Consensus        17 ~~~~~~~pL~~A~--~~~~--------~~~vk~Li~~----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~-   81 (209)
T PHA02859         17 LFYRYCNPLFYYV--EKDD--------IEGVKKWIKF----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNF-   81 (209)
T ss_pred             HhhccCcHHHHHH--HhCc--------HHHHHHHHHh----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCc-
Confidence            3556799999999  9999        9999999975    3457889999999999865  89999999999998654 


Q ss_pred             hhhhchhhHHHHHhcCCC-CCCCChhhHHHhc---CCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHH--hChHHHHHHH
Q 047844          108 EIESGVESTARHMLGMKN-DEEDTALHEAVQS---GSLDVVKILLGADPAFPYSANGSGETPLYLAAA--RAHKEISAEI  181 (264)
Q Consensus       108 ~~~~~~~~~~~~~l~~~~-~~g~t~L~~A~~~---~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~--~~~~~~~~~L  181 (264)
                                      ++ ..|.||||+|+..   ++.+++++|+++|+++ +.+|..|.||||+|+.  .++.+++++|
T Consensus        82 ----------------~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadi-n~~d~~G~TpLh~a~~~~~~~~~iv~~L  144 (209)
T PHA02859         82 ----------------KTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSI-TEEDEDGKNLLHMYMCNFNVRINVIKLL  144 (209)
T ss_pred             ----------------cCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhccCCHHHHHHH
Confidence                            65 5899999998764   4799999999999996 7899999999999876  4689999999


Q ss_pred             HhhCCCCCcCCCCCccHHhH-HHhcCChHHHHHHHhhhCC
Q 047844          182 LQKCPSPAHEGPNGKTALHA-AVCSRSCAASRCHKLHRSS  220 (264)
Q Consensus       182 l~~ga~~~~~~~~g~tpl~~-A~~~~~~~~~~~l~~~~~~  220 (264)
                      ++.|++++.+|..|.||+|. |+..++.+++++|+..++.
T Consensus       145 i~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gad  184 (209)
T PHA02859        145 IDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGID  184 (209)
T ss_pred             HHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCC
Confidence            99999999999999999995 5678899999999988754

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.94  E-value=1.9e-26  Score=186.62  Aligned_cols=187  Identities=25%  Similarity=0.286  Sum_probs=162.1

Q ss_pred             HHHHHcCCchHHhhhhhh-----cccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccce--------
Q 047844            6 YEAAAKGEIEPFNQLAID-----RQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLL--------   72 (264)
Q Consensus         6 ~~A~~~g~~~~~~~l~~~-----~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~--------   72 (264)
                      .-|+..|.+..+..|+.+     ....-....+|.|||.+||  ++|+        .+++++|++.....+.        
T Consensus         9 ~naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaa--RnGH--------~~vVeyLle~~~a~~e~~GsV~FD   78 (615)
T KOG0508|consen    9 INAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAA--RNGH--------ADVVEYLLEHCRASPEQGGSVRFD   78 (615)
T ss_pred             HHHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeeh--hcCc--------HHHHHHHHHHhcCCccCCceEEeC
Confidence            368888999888888862     2222224678999999999  9999        9999999995432222        


Q ss_pred             ecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCC
Q 047844           73 QVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADP  152 (264)
Q Consensus        73 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~  152 (264)
                      -....|-+||-.|+..||.++|+.|++.|+.++.                 ......|||-.||.-|+++++|||+++|+
T Consensus        79 ge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~-----------------tT~TNStPLraACfDG~leivKyLvE~ga  141 (615)
T KOG0508|consen   79 GETIEGAPPLWAASAAGHLEVVKLLLRRGASVND-----------------TTRTNSTPLRAACFDGHLEIVKYLVEHGA  141 (615)
T ss_pred             CcccCCCchhhHHhccCcHHHHHHHHHhcCcccc-----------------ccccCCccHHHHHhcchhHHHHHHHHcCC
Confidence            1234688999999999999999999999988654                 66777899999999999999999999999


Q ss_pred             CCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhCC
Q 047844          153 AFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSS  220 (264)
Q Consensus       153 ~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~  220 (264)
                      +. +..|..|.|+||+||..|+.+++++|++.|+|+|.++..|.|+||-++..|+.+++++|+.+++.
T Consensus       142 d~-~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~  208 (615)
T KOG0508|consen  142 DP-EIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAK  208 (615)
T ss_pred             CC-cccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCce
Confidence            95 89999999999999999999999999999999999999999999999999999999999998875

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.94  E-value=2.2e-26  Score=169.19  Aligned_cols=185  Identities=20%  Similarity=0.212  Sum_probs=156.1

Q ss_pred             HHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHH
Q 047844            4 DLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLH   83 (264)
Q Consensus         4 ~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~   83 (264)
                      .++-|+-.|+.+.+..++.++...+..+-.+++|+.+++  ...+        .+.+..+.++   .+|..|+.|.|||.
T Consensus        99 ~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsV--hql~--------L~~~~~~~~n---~VN~~De~GfTpLi  165 (296)
T KOG0502|consen   99 ALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSV--HQLH--------LDVVDLLVNN---KVNACDEFGFTPLI  165 (296)
T ss_pred             hhhhcCCCCCcceeeeeecccccCCccccccCChhhHHH--HHHH--------HHHHHHHhhc---cccCccccCchHhH
Confidence            456666677777777777755555556777788888877  6666        5555554444   47789999999999


Q ss_pred             HHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCC
Q 047844           84 VAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGE  163 (264)
Q Consensus        84 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~  163 (264)
                      ||+..|+..++++||+.|+++..                 ..+...++|.+|++.|..++++.|+.++.++ +..|.+|.
T Consensus       166 WAaa~G~i~vV~fLL~~GAdp~~-----------------lgk~resALsLAt~ggytdiV~lLL~r~vdV-NvyDwNGg  227 (296)
T KOG0502|consen  166 WAAAKGHIPVVQFLLNSGADPDA-----------------LGKYRESALSLATRGGYTDIVELLLTREVDV-NVYDWNGG  227 (296)
T ss_pred             HHHhcCchHHHHHHHHcCCChhh-----------------hhhhhhhhHhHHhcCChHHHHHHHHhcCCCc-ceeccCCC
Confidence            99999999999999999999876                 6777889999999999999999999999996 78999999


Q ss_pred             CHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhCC
Q 047844          164 TPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSS  220 (264)
Q Consensus       164 t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~  220 (264)
                      |||-+|++.++.+|++.|+..|++++..+..|.+++..|+..|.. +|+..++.-..
T Consensus       228 TpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~l  283 (296)
T KOG0502|consen  228 TPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHAL  283 (296)
T ss_pred             ceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999987 66655554433

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.93  E-value=6.3e-26  Score=204.39  Aligned_cols=206  Identities=25%  Similarity=0.267  Sum_probs=167.4

Q ss_pred             cHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhh-cCcCCCcccHHHHHHHHHhCCccceecCCCCChH
Q 047844            3 SDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYT-QNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAP   81 (264)
Q Consensus         3 ~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g-~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~   81 (264)
                      ||||.|+..++..+++.+++.....+..+..|.||+|+|+  ..| .        .++...+++.+.+ ++.....|.||
T Consensus       409 Tplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa--~~g~~--------~~~~~~l~~~g~~-~n~~s~~G~T~  477 (1143)
T KOG4177|consen  409 TPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAA--KKGRY--------LQIARLLLQYGAD-PNAVSKQGFTP  477 (1143)
T ss_pred             ceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhh--hcccH--------hhhhhhHhhcCCC-cchhccccCcc
Confidence            6888888888888888888833333347888888888888  888 5        6777777777777 77888888888


Q ss_pred             HHHHHHhCCHHHHHHHHHHhhhcchhhhh----------hchhhHH------HHHhcCCCCCCCChhhHHHhcCCHHHHH
Q 047844           82 LHVAARYGHAAVVEALIEIAKQESDQEIE----------SGVESTA------RHMLGMKNDEEDTALHEAVQSGSLDVVK  145 (264)
Q Consensus        82 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~----------~~~~~~~------~~~l~~~~~~g~t~L~~A~~~~~~~~~~  145 (264)
                      ||.|+..|+.++++.+++.++..+.....          .+.....      +..++.++.+|.||||.|+.+|+.++|+
T Consensus       478 Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~Vk  557 (1143)
T KOG4177|consen  478 LHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVK  557 (1143)
T ss_pred             hhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHH
Confidence            88888888888888888876443332111          0000001      1123568889999999999999999999


Q ss_pred             HHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhCC
Q 047844          146 ILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSS  220 (264)
Q Consensus       146 ~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~  220 (264)
                      +|+++|+++ +.++..|+||||.|+..|+.+|+.+|+++|+++|..+.+|.|||++|+..|..++++.++..++.
T Consensus       558 fLLe~gAdv-~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  558 FLLEHGADV-NAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTAT  631 (1143)
T ss_pred             HhhhCCccc-cccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccchhhHHHhccCc
Confidence            999999996 78889999999999999999999999999999999999999999999999999999999887765

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.93  E-value=6e-25  Score=200.99  Aligned_cols=163  Identities=20%  Similarity=0.180  Sum_probs=149.5

Q ss_pred             cCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhh
Q 047844           30 VTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEI  109 (264)
Q Consensus        30 ~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~  109 (264)
                      .+.++.++|+.||  ..|+        .++++.|++.+.+ ++..|..|+||||+|+..|+.+++++|+++|++++.   
T Consensus       521 ~~~~~~~~L~~Aa--~~g~--------~~~l~~Ll~~G~d-~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~---  586 (823)
T PLN03192        521 DDPNMASNLLTVA--STGN--------AALLEELLKAKLD-PDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHI---  586 (823)
T ss_pred             CCccchhHHHHHH--HcCC--------HHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCC---
Confidence            3556789999999  9999        9999999999999 789999999999999999999999999999988554   


Q ss_pred             hhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCC
Q 047844          110 ESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPA  189 (264)
Q Consensus       110 ~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~  189 (264)
                                    +|..|.||||.|+..|+.+++++|++.+...   ....+.++||.|+..|+.+++++|+++|++++
T Consensus       587 --------------~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~---~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin  649 (823)
T PLN03192        587 --------------RDANGNTALWNAISAKHHKIFRILYHFASIS---DPHAAGDLLCTAAKRNDLTAMKELLKQGLNVD  649 (823)
T ss_pred             --------------cCCCCCCHHHHHHHhCCHHHHHHHHhcCccc---CcccCchHHHHHHHhCCHHHHHHHHHCCCCCC
Confidence                          8999999999999999999999999887653   23467899999999999999999999999999


Q ss_pred             cCCCCCccHHhHHHhcCChHHHHHHHhhhCCCCC
Q 047844          190 HEGPNGKTALHAAVCSRSCAASRCHKLHRSSRFL  223 (264)
Q Consensus       190 ~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~~~  223 (264)
                      .+|.+|.||||+|+..|+.+++++|+.+++....
T Consensus       650 ~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~  683 (823)
T PLN03192        650 SEDHQGATALQVAMAEDHVDMVRLLIMNGADVDK  683 (823)
T ss_pred             CCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCC
Confidence            9999999999999999999999999999876443

>PHA02795 ankyrin-like protein; Provisional

Probab=99.93  E-value=5.8e-25  Score=182.72  Aligned_cols=182  Identities=15%  Similarity=0.010  Sum_probs=149.5

Q ss_pred             CcHHHHHHH--cCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecC----
Q 047844            2 NSDLYEAAA--KGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVN----   75 (264)
Q Consensus         2 ~~~l~~A~~--~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~----   75 (264)
                      +|+||+|+.  .|+.+++++|++.+...+.  .++.||+|.|+  ..|+        .+++++|+++|.+..+..+    
T Consensus       117 ~~~L~~~~~n~~n~~eiV~~LI~~GADIn~--~~~~t~lh~A~--~~~~--------~eIVk~Lls~Ga~~~n~~~~~l~  184 (437)
T PHA02795        117 QDLLLYYLSNAYVEIDIVDFMVDHGAVIYK--IECLNAYFRGI--CKKE--------SSVVEFILNCGIPDENDVKLDLY  184 (437)
T ss_pred             cHHHHHHHHhcCCCHHHHHHHHHCCCCCCC--CCCCCHHHHHH--HcCc--------HHHHHHHHhcCCcccccccchhh
Confidence            689999999  9999999999995444322  35589999999  9999        9999999999975444332    


Q ss_pred             -CCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCC
Q 047844           76 -AKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAF  154 (264)
Q Consensus        76 -~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~  154 (264)
                       ..+.+++|.|...++.+++++|+++|++++.                 ++..|.||||+|+..|+.+++++|++.|+++
T Consensus       185 ~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~-----------------kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdI  247 (437)
T PHA02795        185 KIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQ-----------------LDAGGRTLLYRAIYAGYIDLVSWLLENGANV  247 (437)
T ss_pred             hhhccchhHHHHhcCHHHHHHHHHhCcCCcCc-----------------CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence             3478999999999999999999999998554                 9999999999999999999999999999996


Q ss_pred             CCCCCCCCCCHHHHHHHhC--------hHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhh
Q 047844          155 PYSANGSGETPLYLAAARA--------HKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHR  218 (264)
Q Consensus       155 ~~~~~~~g~t~Lh~A~~~~--------~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~  218 (264)
                       +.+|..|+||||+|+..|        +.+++++|+++|++++.....+   +..  ...+.++++.+..+.
T Consensus       248 -N~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~~~~---~~~--~~~n~~~ik~lI~y~  313 (437)
T PHA02795        248 -NAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCIKLAI---LNN--TIENHDVIKLCIKYF  313 (437)
T ss_pred             -CCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCchhHHh---hhc--ccchHHHHHHHHHHH
Confidence             789999999999999988        4699999999999887644322   111  112456666655544

>PHA02730 ankyrin-like protein; Provisional

Probab=99.92  E-value=2.5e-24  Score=187.05  Aligned_cols=192  Identities=11%  Similarity=-0.016  Sum_probs=138.7

Q ss_pred             CcHHHHHHHcC---CchHHhhhhhhcccccccCCCCCchhHHHHHHhhh--cCcCCCcccHHHHHHHHHhCCcc-ceecC
Q 047844            2 NSDLYEAAAKG---EIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYT--QNKEGESVSTKFVERIIEMCPSL-LLQVN   75 (264)
Q Consensus         2 ~~~l~~A~~~g---~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g--~~~~~~~~~~~~~~~ll~~~~~~-~~~~~   75 (264)
                      +||||+|+..|   +.++++.|++.+...+..|..|+||||+|+  ..+  +        .+++++|++.+.+. .+..+
T Consensus        42 ~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa--~~~~~~--------~eIv~~Ll~~~~~~~~~~~~  111 (672)
T PHA02730         42 NNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYS--KRKYVK--------SQIVHLLISSYSNASNELTS  111 (672)
T ss_pred             CcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHH--HcCCCc--------HHHHHHHHhcCCCCCccccc
Confidence            47788887776   477888888743333446777888888777  644  6        77888888775431 34455


Q ss_pred             CCCChHHHHHHH--hCCHHHHHHHHH-HhhhcchhhhhhchhhHHHHHhcCC-CCCCCChhhHHHhcCCHHHHHHHhcCC
Q 047844           76 AKGDAPLHVAAR--YGHAAVVEALIE-IAKQESDQEIESGVESTARHMLGMK-NDEEDTALHEAVQSGSLDVVKILLGAD  151 (264)
Q Consensus        76 ~~g~t~L~~A~~--~g~~~~v~~Ll~-~~~~~~~~~~~~~~~~~~~~~l~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g  151 (264)
                      ..+.+||+.++.  .++.+++++|+. .+.+++...             +.+ +..|.+|++++...++.+++++|++.|
T Consensus       112 ~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~-------------~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g  178 (672)
T PHA02730        112 NINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNT-------------NYYIHCLGLVDIYVTTPNPRPEVLLWLLKSE  178 (672)
T ss_pred             ccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhh-------------hhhccccchhhhhHhcCCCchHHHHHHHHcC
Confidence            557777777777  667777887775 334433210             011 137899999999999999999999999


Q ss_pred             CCCC------CCCCCCCCCH-HHHH------HHhChHHHHHHHHhhCCCCCcCCCCCccHHhH--HHhcCChHHHHHHHh
Q 047844          152 PAFP------YSANGSGETP-LYLA------AARAHKEISAEILQKCPSPAHEGPNGKTALHA--AVCSRSCAASRCHKL  216 (264)
Q Consensus       152 ~~~~------~~~~~~g~t~-Lh~A------~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~--A~~~~~~~~~~~l~~  216 (264)
                      +++.      ...+..+.+| ||++      ...++.+++++|+++|++++.+|..|.||||+  |...++.|++++|+.
T Consensus       179 ~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~  258 (672)
T PHA02730        179 CYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIK  258 (672)
T ss_pred             CcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHh
Confidence            9962      1233344444 5533      45678999999999999999999999999995  556677999999998

>PHA02917 ankyrin-like protein; Provisional

Probab=99.92  E-value=7.5e-24  Score=187.71  Aligned_cols=178  Identities=16%  Similarity=0.139  Sum_probs=145.0

Q ss_pred             chHHhhhhhhcccccccCCCCCchhHHHHHHhh---hcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCC
Q 047844           14 IEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASY---TQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGH   90 (264)
Q Consensus        14 ~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~---g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~   90 (264)
                      ++.+++|+.+....+..|.+|.||||+|+  ..   |+        .+++++|++.|.+ ++..+..|+||||+|+..|+
T Consensus        12 ~~~~~~l~~~~~~~~~~d~~g~t~Lh~a~--~~~~~~~--------~~~v~~Ll~~ga~-v~~~~~~g~TpL~~Aa~~g~   80 (661)
T PHA02917         12 LDELKQMLRDRDPNDTRNQFKNNALHAYL--FNEHCNN--------VEVVKLLLDSGTN-PLHKNWRQLTPLEEYTNSRH   80 (661)
T ss_pred             HHHHHHHHhccCcccccCCCCCcHHHHHH--HhhhcCc--------HHHHHHHHHCCCC-ccccCCCCCCHHHHHHHcCC
Confidence            47788888865555667999999999986  54   88        9999999999999 67889999999999999998


Q ss_pred             HH----HHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHH
Q 047844           91 AA----VVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPL  166 (264)
Q Consensus        91 ~~----~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L  166 (264)
                      .+    +++.|++.+...+.                 .+  ..++++.|+..|+.+++++|+++|+++ +.+|..|+|||
T Consensus        81 ~~v~~~~~~~Ll~~~~~~n~-----------------~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadi-n~~d~~g~T~L  140 (661)
T PHA02917         81 VKVNKDIAMALLEATGYSNI-----------------ND--FNIFSYMKSKNVDVDLIKVLVEHGFDL-SVKCENHRSVI  140 (661)
T ss_pred             hhHHHHHHHHHHhccCCCCC-----------------CC--cchHHHHHhhcCCHHHHHHHHHcCCCC-CccCCCCccHH
Confidence            54    55677765432211                 11  236678889999999999999999996 78999999999


Q ss_pred             HHHH--HhChHHHHHHHHhhCCCCCcCCC---CC-----------ccHHhHHHh-----------cCChHHHHHHHhhhC
Q 047844          167 YLAA--ARAHKEISAEILQKCPSPAHEGP---NG-----------KTALHAAVC-----------SRSCAASRCHKLHRS  219 (264)
Q Consensus       167 h~A~--~~~~~~~~~~Ll~~ga~~~~~~~---~g-----------~tpl~~A~~-----------~~~~~~~~~l~~~~~  219 (264)
                      |.++  ..++.+++++|+++|++++.+|.   .|           .||||+|+.           +++.+++++|+.+++
T Consensus       141 ~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Ga  220 (661)
T PHA02917        141 ENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGI  220 (661)
T ss_pred             HHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCC
Confidence            9654  57899999999999999986553   33           599999976           468999999999988


Q ss_pred             CCC
Q 047844          220 SRF  222 (264)
Q Consensus       220 ~~~  222 (264)
                      ...
T Consensus       221 dvn  223 (661)
T PHA02917        221 KPS  223 (661)
T ss_pred             Ccc
Confidence            643

>PHA02730 ankyrin-like protein; Provisional

Probab=99.91  E-value=2.6e-23  Score=180.80  Aligned_cols=159  Identities=14%  Similarity=0.124  Sum_probs=132.5

Q ss_pred             hhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCC----HHHHHHHHHHhhhcchhhhhhc
Q 047844           37 VLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGH----AAVVEALIEIAKQESDQEIESG  112 (264)
Q Consensus        37 ~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~~~~~~~~~~~~~  112 (264)
                      .||.-.  +.+.     .+..++++.|+++|++ ++.. ..|.||||+|+..++    .+++++|+++|+..+       
T Consensus       346 ~l~~Y~--~~~~-----~v~ieIvelLIs~GAd-IN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~d-------  409 (672)
T PHA02730        346 MLINYL--HYGD-----MVSIPILRCMLDNGAT-MDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMA-------  409 (672)
T ss_pred             HHHHHH--hcCC-----cCcHHHHHHHHHCCCC-CCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCcc-------
Confidence            566666  5442     1239999999999999 6664 799999999998875    899999999987421       


Q ss_pred             hhhHHHHHhcCCCCCCCChhhH---HHhcC---------CHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHH
Q 047844          113 VESTARHMLGMKNDEEDTALHE---AVQSG---------SLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAE  180 (264)
Q Consensus       113 ~~~~~~~~l~~~~~~g~t~L~~---A~~~~---------~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~  180 (264)
                              ++.++..|.||||.   |...+         ..+++++|++.|+++ +.+|..|.||||+|+..++.+++++
T Consensus       410 --------IN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADI-NakD~~G~TPLh~Aa~~~~~eive~  480 (672)
T PHA02730        410 --------INHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDI-DMIDNENKTLLYYAVDVNNIQFARR  480 (672)
T ss_pred             --------ccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccch-hccCCCCCCHHHHHHHhCCHHHHHH
Confidence                    24488899999984   33222         235799999999996 8999999999999999999999999


Q ss_pred             HHhhCCCCCcCCC-CCccHHhHHHhc--CChHHHHHHHhhhCC
Q 047844          181 ILQKCPSPAHEGP-NGKTALHAAVCS--RSCAASRCHKLHRSS  220 (264)
Q Consensus       181 Ll~~ga~~~~~~~-~g~tpl~~A~~~--~~~~~~~~l~~~~~~  220 (264)
                      |+++|++++.++. .|.||+|+|+..  ++.++++.|+.+++.
T Consensus       481 LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~  523 (672)
T PHA02730        481 LLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHPT  523 (672)
T ss_pred             HHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCCC
Confidence            9999999999997 599999999874  789999999998764

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.91  E-value=1.3e-24  Score=196.02  Aligned_cols=209  Identities=21%  Similarity=0.211  Sum_probs=176.3

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChH
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAP   81 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~   81 (264)
                      .+|+|.|+..|..+.++.+++.....+....+|.||||.|+  .+++        ..+++.+++.+++ .+..+..|+||
T Consensus       375 ~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~aa--~~~~--------~~~v~l~l~~gA~-~~~~~~lG~T~  443 (1143)
T KOG4177|consen  375 FTPLHLAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHVAA--HYGN--------PRVVKLLLKRGAS-PNAKAKLGYTP  443 (1143)
T ss_pred             CcchhhhcccCchhHHHhhhhccCCcccCCCCCcceeeehh--hccC--------cceEEEEeccCCC-hhhHhhcCCCh
Confidence            57999999999999999999954445558999999999999  9999        9999999999999 88999999999


Q ss_pred             HHHHHHhC-CHHHHHHHHHHhhhcchhhhh----------hchhhHHHHH------hcCCCCCCCChhhHHHhcCCHHHH
Q 047844           82 LHVAARYG-HAAVVEALIEIAKQESDQEIE----------SGVESTARHM------LGMKNDEEDTALHEAVQSGSLDVV  144 (264)
Q Consensus        82 L~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~----------~~~~~~~~~~------l~~~~~~g~t~L~~A~~~~~~~~~  144 (264)
                      +|+|+..| ..++...++..|.+++.....          .+.......+      ++.....+.+++|.+...+...++
T Consensus       444 lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~  523 (1143)
T KOG4177|consen  444 LHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVA  523 (1143)
T ss_pred             hhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHH
Confidence            99999999 889999999999887764221          1111112211      233445667777777777777777


Q ss_pred             HHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhCCCC
Q 047844          145 KILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSSRF  222 (264)
Q Consensus       145 ~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~~  222 (264)
                      +.++++|+++ +.++..|+||||.|+..|+.++|++|+++|++++.+++.|+||||.|+..|+.+++..|.++++...
T Consensus       524 ~~l~~~ga~v-~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vn  600 (1143)
T KOG4177|consen  524 KILLEHGANV-DLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVN  600 (1143)
T ss_pred             HHHhhcCCce-ehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCC
Confidence            7777888875 6788899999999999999999999999999999999999999999999999999999999998643

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.91  E-value=2.2e-24  Score=177.38  Aligned_cols=189  Identities=23%  Similarity=0.253  Sum_probs=161.4

Q ss_pred             HHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHH
Q 047844            5 LYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHV   84 (264)
Q Consensus         5 l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~   84 (264)
                      +..|+.+|+.+-+..|+..+...+..+.+|.|+||-+|  ...+        .+++++|++++++ ++..|..||||||.
T Consensus        44 ~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~--id~~--------~e~v~~l~e~ga~-Vn~~d~e~wtPlha  112 (527)
T KOG0505|consen   44 FLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQAC--IDDN--------LEMVKFLVENGAN-VNAQDNEGWTPLHA  112 (527)
T ss_pred             HHhccccccHHHHHHHhccCCCccccCCccchhHHHHH--hccc--------HHHHHHHHHhcCC-ccccccccCCcchh
Confidence            56788899999999999832222448999999999999  9999        9999999999999 89999999999999


Q ss_pred             HHHhCCHHHHHHHHHHhhhcchhhhhhchhh------------------------------------------HHHHHhc
Q 047844           85 AARYGHAAVVEALIEIAKQESDQEIESGVES------------------------------------------TARHMLG  122 (264)
Q Consensus        85 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~------------------------------------------~~~~~l~  122 (264)
                      |+..|+..++++|++.|++....+...+...                                          ..+...+
T Consensus       113 aascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d  192 (527)
T KOG0505|consen  113 AASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELD  192 (527)
T ss_pred             hcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhcccccc
Confidence            9999999999999999987755432111100                                          0011123


Q ss_pred             CCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHH
Q 047844          123 MKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAA  202 (264)
Q Consensus       123 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A  202 (264)
                      +....|.|.||+|+..|..++.++|++.|.++ +.+|.+||||||.|+..|+.++++.|+++|++++..+..|.+|+.+|
T Consensus       193 ~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~-~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~  271 (527)
T KOG0505|consen  193 ARHARGATALHVAAANGYTEVAALLLQAGYSV-NIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVA  271 (527)
T ss_pred             ccccccchHHHHHHhhhHHHHHHHHHHhccCc-ccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccch
Confidence            45566999999999999999999999999996 89999999999999999999999999999999999999999999998


Q ss_pred             Hhc
Q 047844          203 VCS  205 (264)
Q Consensus       203 ~~~  205 (264)
                      ...
T Consensus       272 dee  274 (527)
T KOG0505|consen  272 DEE  274 (527)
T ss_pred             hhh
Confidence            654

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.90  E-value=4.6e-23  Score=153.50  Aligned_cols=138  Identities=14%  Similarity=0.106  Sum_probs=106.5

Q ss_pred             cCCCCCchhHHHHHHhhhcCcCCCcccH----HHHHHHHHhCCccceecCCCCChHHHHHHHhCCHH---HHHHHHHHhh
Q 047844           30 VTHKKNTVLHVNIIASYTQNKEGESVST----KFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAA---VVEALIEIAK  102 (264)
Q Consensus        30 ~~~~g~t~L~~A~~~~~g~~~~~~~~~~----~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~---~v~~Ll~~~~  102 (264)
                      .+.++.+++|.||  ..|+        .    +++++|++.+.. ++..|..|+||||+|+..|+.+   ++++|++.|+
T Consensus        16 ~~~~~~~~l~~a~--~~g~--------~~~l~~~~~~l~~~g~~-~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Ga   84 (166)
T PHA02743         16 IDEDEQNTFLRIC--RTGN--------IYELMEVAPFISGDGHL-LHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGA   84 (166)
T ss_pred             hccCCCcHHHHHH--HcCC--------HHHHHHHHHHHhhcchh-hhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCC
Confidence            4566777888888  8888        6    455566666666 6777888888888888887754   3778888887


Q ss_pred             hcchhhhhhchhhHHHHHhcCCC-CCCCChhhHHHhcCCHHHHHHHhc-CCCCCCCCCCCCCCCHHHHHHHhChHHHHHH
Q 047844          103 QESDQEIESGVESTARHMLGMKN-DEEDTALHEAVQSGSLDVVKILLG-ADPAFPYSANGSGETPLYLAAARAHKEISAE  180 (264)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~l~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~  180 (264)
                      +++.                 ++ ..|.||||+|+..|+.+++++|++ .|+++ +.++..|.||||+|+..++.+++++
T Consensus        85 din~-----------------~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~-~~~d~~g~tpL~~A~~~~~~~iv~~  146 (166)
T PHA02743         85 DINA-----------------RELGTGNTLLHIAASTKNYELAEWLCRQLGVNL-GAINYQHETAYHIAYKMRDRRMMEI  146 (166)
T ss_pred             CCCC-----------------CCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCc-cCcCCCCCCHHHHHHHcCCHHHHHH
Confidence            7543                 66 478888888888888888888884 68775 5678888888888888888888888


Q ss_pred             HHhhCCCCCcCCCCCc
Q 047844          181 ILQKCPSPAHEGPNGK  196 (264)
Q Consensus       181 Ll~~ga~~~~~~~~g~  196 (264)
                      |+++|++++.++..|.
T Consensus       147 Ll~~ga~~~~~~~~~~  162 (166)
T PHA02743        147 LRANGAVCDDPLSIGL  162 (166)
T ss_pred             HHHcCCCCCCcccCCc
Confidence            8888888888776664

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.90  E-value=3.1e-23  Score=188.54  Aligned_cols=139  Identities=18%  Similarity=0.095  Sum_probs=111.8

Q ss_pred             CCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCC
Q 047844           76 AKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFP  155 (264)
Q Consensus        76 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~  155 (264)
                      ..|.||||+|+..|+.+++++|+++|++++..+.+.....   .........|.+|||.|+..|+.+++++|++.|+++ 
T Consensus       126 ~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~---~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadi-  201 (743)
T TIGR00870       126 TPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVK---SQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADI-  201 (743)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhc---CCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcch-
Confidence            4699999999999999999999999999875432211110   000012246899999999999999999999999985 


Q ss_pred             CCCCCCCCCHHHHHHHhC---------hHHHHHHHHhhCCCC-------CcCCCCCccHHhHHHhcCChHHHHHHHhhh
Q 047844          156 YSANGSGETPLYLAAARA---------HKEISAEILQKCPSP-------AHEGPNGKTALHAAVCSRSCAASRCHKLHR  218 (264)
Q Consensus       156 ~~~~~~g~t~Lh~A~~~~---------~~~~~~~Ll~~ga~~-------~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~  218 (264)
                      +..|..|+||||+|+..+         ...+.++++..+++.       +..|..|.||+++|+..|+.++++.++..+
T Consensus       202 n~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~  280 (743)
T TIGR00870       202 LTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIK  280 (743)
T ss_pred             hhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHH
Confidence            788999999999999986         344667777766554       667999999999999999999999998754

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02741 hypothetical protein; Provisional

Probab=99.90  E-value=8.8e-23  Score=152.66  Aligned_cols=138  Identities=16%  Similarity=0.232  Sum_probs=118.1

Q ss_pred             ceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCC----HHHHHH
Q 047844           71 LLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGS----LDVVKI  146 (264)
Q Consensus        71 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~----~~~~~~  146 (264)
                      ++..+..|.||||+|+..|+.++++.|+......           .....++.+|..|.||||+|+..|+    .+++++
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~-----------~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~   82 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGD-----------CHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDH   82 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccc-----------hhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHH
Confidence            4567889999999999999999999987542100           0112256689999999999999998    589999


Q ss_pred             HhcCCCCCCCCCCC-CCCCHHHHHHHhChHHHHHHHHh-hCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhCC
Q 047844          147 LLGADPAFPYSANG-SGETPLYLAAARAHKEISAEILQ-KCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSS  220 (264)
Q Consensus       147 Ll~~g~~~~~~~~~-~g~t~Lh~A~~~~~~~~~~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~  220 (264)
                      |++.|+++ +.++. .|+||||+|+..++.+++++|+. .|++++.+|..|+|||++|+..++.+++++|..+.+.
T Consensus        83 Ll~~gadi-n~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         83 LIELGADI-NAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             HHHcCCCC-CCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            99999996 66674 89999999999999999999997 5999999999999999999999999999999887643

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.90  E-value=6.3e-24  Score=156.27  Aligned_cols=166  Identities=18%  Similarity=0.148  Sum_probs=147.0

Q ss_pred             cHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHH
Q 047844            3 SDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPL   82 (264)
Q Consensus         3 ~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L   82 (264)
                      +|+..++.+.+++.+..+.+  +..+.+|++|+|||.+|+  ..|+        ++.+++|++.|++ +....+...++|
T Consensus       131 s~~slsVhql~L~~~~~~~~--n~VN~~De~GfTpLiWAa--a~G~--------i~vV~fLL~~GAd-p~~lgk~resAL  197 (296)
T KOG0502|consen  131 SPLSLSVHQLHLDVVDLLVN--NKVNACDEFGFTPLIWAA--AKGH--------IPVVQFLLNSGAD-PDALGKYRESAL  197 (296)
T ss_pred             ChhhHHHHHHHHHHHHHHhh--ccccCccccCchHhHHHH--hcCc--------hHHHHHHHHcCCC-hhhhhhhhhhhH
Confidence            57888999998888888777  333349999999999999  9999        9999999999999 777788889999


Q ss_pred             HHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCC
Q 047844           83 HVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSG  162 (264)
Q Consensus        83 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g  162 (264)
                      .+|++.|..+|+++||..+.++                 |..|.+|.|||.+|++.|+.+|++-|++.|+++ +..+..|
T Consensus       198 sLAt~ggytdiV~lLL~r~vdV-----------------NvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~-t~e~dsG  259 (296)
T KOG0502|consen  198 SLATRGGYTDIVELLLTREVDV-----------------NVYDWNGGTPLLYAVRGNHVKCVESLLNSGADV-TQEDDSG  259 (296)
T ss_pred             hHHhcCChHHHHHHHHhcCCCc-----------------ceeccCCCceeeeeecCChHHHHHHHHhcCCCc-ccccccC
Confidence            9999999999999999998884                 558999999999999999999999999999996 6788899


Q ss_pred             CCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHh
Q 047844          163 ETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALH  200 (264)
Q Consensus       163 ~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~  200 (264)
                      +++|..|+..|.- +++..++..+....+|...++|+|
T Consensus       260 y~~mdlAValGyr-~Vqqvie~h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  260 YWIMDLAVALGYR-IVQQVIEKHALKLCQDSEKRTPLH  296 (296)
T ss_pred             CcHHHHHHHhhhH-HHHHHHHHHHHHHhhcccCCCCCC
Confidence            9999999999987 888888887777777777777764

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.89  E-value=5.2e-23  Score=161.88  Aligned_cols=162  Identities=27%  Similarity=0.295  Sum_probs=143.6

Q ss_pred             cccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHh-----CCHHHHHHHHHHhh
Q 047844           28 SLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARY-----GHAAVVEALIEIAK  102 (264)
Q Consensus        28 ~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~-----g~~~~v~~Ll~~~~  102 (264)
                      +..|.+|+|+||+|+  ..++        +++|+.|++.+...++.++.-|+||+++|+..     .+.++|+.|...|-
T Consensus       262 NlaDsNGNTALHYsV--SHaN--------F~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgn  331 (452)
T KOG0514|consen  262 NLADSNGNTALHYAV--SHAN--------FDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGD  331 (452)
T ss_pred             hhhcCCCCeeeeeee--cccc--------hHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccC
Confidence            347999999999999  9999        99999999999998999999999999998864     35678888887652


Q ss_pred             hcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHH
Q 047844          103 QESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEIL  182 (264)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll  182 (264)
                       ++..                ....|+|+|++|+..|+.++++.|+.+|+++ |..|.+|.|+|++|+.+|+.+++++|+
T Consensus       332 -VNaK----------------AsQ~gQTALMLAVSHGr~d~vk~LLacgAdV-NiQDdDGSTALMCA~EHGhkEivklLL  393 (452)
T KOG0514|consen  332 -VNAK----------------ASQHGQTALMLAVSHGRVDMVKALLACGADV-NIQDDDGSTALMCAAEHGHKEIVKLLL  393 (452)
T ss_pred             -cchh----------------hhhhcchhhhhhhhcCcHHHHHHHHHccCCC-ccccCCccHHHhhhhhhChHHHHHHHh
Confidence             2221                3457999999999999999999999999997 899999999999999999999999999


Q ss_pred             hh-CCCCCcCCCCCccHHhHHHhcCChHHHHHHHhh
Q 047844          183 QK-CPSPAHEGPNGKTALHAAVCSRSCAASRCHKLH  217 (264)
Q Consensus       183 ~~-ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~  217 (264)
                      .. ++|+...|.+|.|+|.+|...|+.||...|-.+
T Consensus       394 A~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  394 AVPSCDISLTDVDGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             ccCcccceeecCCCchhhhhHHhcCchHHHHHHHHH
Confidence            77 489999999999999999999999998776444

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.89  E-value=8.4e-23  Score=160.71  Aligned_cols=159  Identities=22%  Similarity=0.274  Sum_probs=138.3

Q ss_pred             CcHHHHHHHcCCchHHhhhhh-hcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCCh
Q 047844            2 NSDLYEAAAKGEIEPFNQLAI-DRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDA   80 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~-~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t   80 (264)
                      ||+||||+.++++++|++|++ .+...+.++.-|.||++.++++....+.+     .++|..|+..|.- .-...+.|+|
T Consensus       269 NTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d-----~~vV~~LF~mgnV-NaKAsQ~gQT  342 (452)
T KOG0514|consen  269 NTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPAD-----RTVVERLFKMGDV-NAKASQHGQT  342 (452)
T ss_pred             CeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhh-----HHHHHHHHhccCc-chhhhhhcch
Confidence            799999999999999999999 55555558999999999999666655333     7888888887754 3456788999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcC-CCCCCCCCC
Q 047844           81 PLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGA-DPAFPYSAN  159 (264)
Q Consensus        81 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~  159 (264)
                      +|++|+.+|+.++++.||..|+++                 |++|.+|.|+|+.|++.||.|++++|+.. +++ ...+|
T Consensus       343 ALMLAVSHGr~d~vk~LLacgAdV-----------------NiQDdDGSTALMCA~EHGhkEivklLLA~p~cd-~sLtD  404 (452)
T KOG0514|consen  343 ALMLAVSHGRVDMVKALLACGADV-----------------NIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCD-ISLTD  404 (452)
T ss_pred             hhhhhhhcCcHHHHHHHHHccCCC-----------------ccccCCccHHHhhhhhhChHHHHHHHhccCccc-ceeec
Confidence            999999999999999999999995                 55999999999999999999999999974 556 47899


Q ss_pred             CCCCCHHHHHHHhChHHHHHHHHhh
Q 047844          160 GSGETPLYLAAARAHKEISAEILQK  184 (264)
Q Consensus       160 ~~g~t~Lh~A~~~~~~~~~~~Ll~~  184 (264)
                      .+|.|+|.+|...|+.++.-+|..+
T Consensus       405 ~DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  405 VDGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             CCCchhhhhHHhcCchHHHHHHHHH
Confidence            9999999999999999999888755

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.89  E-value=4.3e-22  Score=148.27  Aligned_cols=133  Identities=13%  Similarity=0.109  Sum_probs=115.5

Q ss_pred             ceecCCCCChHHHHHHHhCCH----HHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHH---
Q 047844           71 LLQVNAKGDAPLHVAARYGHA----AVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDV---  143 (264)
Q Consensus        71 ~~~~~~~g~t~L~~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~---  143 (264)
                      ++..+.++.++||.|++.|+.    +++++|++.+...                 +.++..|.||||+|+..|+.+.   
T Consensus        13 ~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~-----------------~~~d~~g~t~Lh~Aa~~g~~~~~~~   75 (166)
T PHA02743         13 AVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLL-----------------HRYDHHGRQCTHMVAWYDRANAVMK   75 (166)
T ss_pred             HhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhh-----------------hccCCCCCcHHHHHHHhCccCHHHH
Confidence            445677888999999999998    5566677766653                 4488999999999999988654   


Q ss_pred             HHHHhcCCCCCCCCCC-CCCCCHHHHHHHhChHHHHHHHHh-hCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhCCC
Q 047844          144 VKILLGADPAFPYSAN-GSGETPLYLAAARAHKEISAEILQ-KCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSSR  221 (264)
Q Consensus       144 ~~~Ll~~g~~~~~~~~-~~g~t~Lh~A~~~~~~~~~~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~  221 (264)
                      +++|++.|+++ +.++ ..|.||||+|+..++.+++++|+. .|++++.++..|.||||+|+..++.+++++|+.+++..
T Consensus        76 i~~Ll~~Gadi-n~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~  154 (166)
T PHA02743         76 IELLVNMGADI-NARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVC  154 (166)
T ss_pred             HHHHHHcCCCC-CCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            89999999996 6777 589999999999999999999995 89999999999999999999999999999999987654

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.89  E-value=3.1e-22  Score=182.08  Aligned_cols=184  Identities=21%  Similarity=0.199  Sum_probs=141.2

Q ss_pred             cHHHHHHHcCCchHHhhhhhh--cccccccCCCCCchhH-HHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCC
Q 047844            3 SDLYEAAAKGEIEPFNQLAID--RQLGSLVTHKKNTVLH-VNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGD   79 (264)
Q Consensus         3 ~~l~~A~~~g~~~~~~~l~~~--~~~~~~~~~~g~t~L~-~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~   79 (264)
                      ..++.||..|+.+.++.++++  ....+..|..|.|||| .|+  ..++        .++++.|++.+.     .+..|.
T Consensus        19 ~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~--~~~~--------~eiv~lLl~~g~-----~~~~G~   83 (743)
T TIGR00870        19 KAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAI--ENEN--------LELTELLLNLSC-----RGAVGD   83 (743)
T ss_pred             HHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHH--hcCh--------HHHHHHHHhCCC-----CCCcCh
Confidence            478999999999999999985  4444457889999999 888  8888        999999999886     577899


Q ss_pred             hHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCC
Q 047844           80 APLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSAN  159 (264)
Q Consensus        80 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~  159 (264)
                      ||||.|+. +..+.++.++.............   ..........+..|.||||+|+..|+.+++++|+++|+++. .++
T Consensus        84 T~Lh~A~~-~~~~~v~~ll~~l~~~~~~~~~~---~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~-~~~  158 (743)
T TIGR00870        84 TLLHAISL-EYVDAVEAILLHLLAAFRKSGPL---ELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVP-ARA  158 (743)
T ss_pred             HHHHHHHh-ccHHHHHHHHHHHhhcccccCch---hhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC-cCc
Confidence            99999987 33344444443322211100000   00000001133579999999999999999999999999864 321


Q ss_pred             --------------CCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcC
Q 047844          160 --------------GSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSR  206 (264)
Q Consensus       160 --------------~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~  206 (264)
                                    ..|.||||.|+..++.+++++|++.|++++.+|..|+||+|+|+..+
T Consensus       159 ~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       159 CGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMEN  219 (743)
T ss_pred             CCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhh
Confidence                          35899999999999999999999999999999999999999999886

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.89  E-value=1e-22  Score=173.54  Aligned_cols=189  Identities=25%  Similarity=0.210  Sum_probs=154.7

Q ss_pred             cHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHH
Q 047844            3 SDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPL   82 (264)
Q Consensus         3 ~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L   82 (264)
                      |.||.|+.+|+.++++.|++.......++..|.+|||+|+  ..|+        .++++.++.+... ++..+..|.|||
T Consensus        51 Talhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaa--w~g~--------~e~vkmll~q~d~-~na~~~e~~tpl  119 (854)
T KOG0507|consen   51 TLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAA--WNGN--------LEIVKMLLLQTDI-LNAVNIENETPL  119 (854)
T ss_pred             hHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehh--hcCc--------chHHHHHHhcccC-CCcccccCcCcc
Confidence            7899999999999999999966666668899999999999  9999        9999999998844 888899999999


Q ss_pred             HHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCC-------C
Q 047844           83 HVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAF-------P  155 (264)
Q Consensus        83 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-------~  155 (264)
                      |.|++.|+.+++++|+.+++++..                 .+..+.|+|-+|++.|..++++.|++...+.       .
T Consensus       120 hlaaqhgh~dvv~~Ll~~~adp~i-----------------~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~  182 (854)
T KOG0507|consen  120 HLAAQHGHLEVVFYLLKKNADPFI-----------------RNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGD  182 (854)
T ss_pred             chhhhhcchHHHHHHHhcCCCccc-----------------cCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCC
Confidence            999999999999999999998766                 7777888888888888888888887652221       1


Q ss_pred             CCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhCC
Q 047844          156 YSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSS  220 (264)
Q Consensus       156 ~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~  220 (264)
                      ..++..+-+|+|.|+++|+.++++.|++.|.++|.....| |+||-|+..|..++|++|+..+..
T Consensus       183 ~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~g-talheaalcgk~evvr~ll~~gin  246 (854)
T KOG0507|consen  183 IKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTEDG-TALHEAALCGKAEVVRFLLEIGIN  246 (854)
T ss_pred             CCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccccccc-hhhhhHhhcCcchhhhHHHhhccc
Confidence            2345567788888888888888888888888888766554 788888888888888888776643

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.88  E-value=3.9e-22  Score=147.11  Aligned_cols=136  Identities=15%  Similarity=0.110  Sum_probs=110.9

Q ss_pred             ceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCH---HHHHHH
Q 047844           71 LLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSL---DVVKIL  147 (264)
Q Consensus        71 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~---~~~~~L  147 (264)
                      .+..|.+|.||||+|+..|+.  ++++...+.....          ...++..+|..|.||||+|+..|+.   +++++|
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~----------~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~L   77 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDE----------NRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLL   77 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcch----------hHHHHHHhcCCCCEEEEeecccCchhHHHHHHHH
Confidence            345678899999999999983  3444333322111          1122344788999999999999986   468999


Q ss_pred             hcCCCCCCCCCC-CCCCCHHHHHHHhChHHHHHHHHh-hCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhC
Q 047844          148 LGADPAFPYSAN-GSGETPLYLAAARAHKEISAEILQ-KCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRS  219 (264)
Q Consensus       148 l~~g~~~~~~~~-~~g~t~Lh~A~~~~~~~~~~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~  219 (264)
                      ++.|+++ +.++ ..|+||||+|+..++.+++++|+. .|++++.++..|.||+|+|+..++.+++++|+.+++
T Consensus        78 l~~gadi-n~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga  150 (154)
T PHA02736         78 MEWGADI-NGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGA  150 (154)
T ss_pred             HHcCCCc-cccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            9999996 6676 589999999999999999999997 589999999999999999999999999999988764

>PHA02741 hypothetical protein; Provisional

Probab=99.88  E-value=6.2e-22  Score=148.07  Aligned_cols=129  Identities=19%  Similarity=0.250  Sum_probs=115.0

Q ss_pred             cCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHh------CCccceecCCCCChHHHHHHHhCC----HHHHHHHHH
Q 047844           30 VTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEM------CPSLLLQVNAKGDAPLHVAARYGH----AAVVEALIE   99 (264)
Q Consensus        30 ~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~------~~~~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~   99 (264)
                      .+..|.||||+|+  ..|+        .++++.|+..      +.+ ++.+|..|+||||+|+..|+    .+++++|++
T Consensus        17 ~~~~g~t~Lh~Aa--~~g~--------~~~v~~l~~~~~~~~~ga~-in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~   85 (169)
T PHA02741         17 KNSEGENFFHEAA--RCGC--------FDIIARFTPFIRGDCHAAA-LNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIE   85 (169)
T ss_pred             cccCCCCHHHHHH--HcCC--------HHHHHHHHHHhccchhhhh-hhccCCCCCcHHHHHHHcCChHHHHHHHHHHHH
Confidence            5789999999999  9999        9999998653      344 78899999999999999998    588999999


Q ss_pred             HhhhcchhhhhhchhhHHHHHhcCCCC-CCCChhhHHHhcCCHHHHHHHhc-CCCCCCCCCCCCCCCHHHHHHHhChHHH
Q 047844          100 IAKQESDQEIESGVESTARHMLGMKND-EEDTALHEAVQSGSLDVVKILLG-ADPAFPYSANGSGETPLYLAAARAHKEI  177 (264)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~g~t~Lh~A~~~~~~~~  177 (264)
                      .|++++.                 ++. .|.||||+|+..++.+++++|++ .|+++ +..|..|+||||+|+..++.++
T Consensus        86 ~gadin~-----------------~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~-~~~n~~g~tpL~~A~~~~~~~i  147 (169)
T PHA02741         86 LGADINA-----------------QEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDL-HFCNADNKSPFELAIDNEDVAM  147 (169)
T ss_pred             cCCCCCC-----------------CCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CcCCCCCCCHHHHHHHCCCHHH
Confidence            9888544                 774 89999999999999999999997 58885 7889999999999999999999


Q ss_pred             HHHHHhhCCC
Q 047844          178 SAEILQKCPS  187 (264)
Q Consensus       178 ~~~Ll~~ga~  187 (264)
                      +++|+++++.
T Consensus       148 v~~L~~~~~~  157 (169)
T PHA02741        148 MQILREIVAT  157 (169)
T ss_pred             HHHHHHHHHH
Confidence            9999998754

>PHA02792 ankyrin-like protein; Provisional

Probab=99.88  E-value=2.4e-21  Score=166.99  Aligned_cols=194  Identities=12%  Similarity=0.072  Sum_probs=143.1

Q ss_pred             CcHHHHHHHcC-------CchHHhhhhhhcccccccCCCCCchhHHHHHHhhh--c------------------------
Q 047844            2 NSDLYEAAAKG-------EIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYT--Q------------------------   48 (264)
Q Consensus         2 ~~~l~~A~~~g-------~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g--~------------------------   48 (264)
                      .||||+|+..+       +.|+++.|++.+...+..|..|.||||+|+  ...  .                        
T Consensus       176 ~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~--~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y  253 (631)
T PHA02792        176 KTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYV--DKCDIKREIFDALFDSNYSGNELMNILSNY  253 (631)
T ss_pred             CchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHH--HcccchHHHHHHHHhccccccchHhHHHHH
Confidence            58999999999       899999999965555558889999999999  777  2                        


Q ss_pred             ---Cc--------------------------------------------------------CCCcccHHHHHHHHHhCCc
Q 047844           49 ---NK--------------------------------------------------------EGESVSTKFVERIIEMCPS   69 (264)
Q Consensus        49 ---~~--------------------------------------------------------~~~~~~~~~~~~ll~~~~~   69 (264)
                         ..                                                        +.-.+.++++++|++.|.+
T Consensus       254 ~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~  333 (631)
T PHA02792        254 LRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGAT  333 (631)
T ss_pred             HHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCc
Confidence               00                                                        0001134445555555554


Q ss_pred             cceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCC--CCChhhHHHhcCCH---HHH
Q 047844           70 LLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDE--EDTALHEAVQSGSL---DVV  144 (264)
Q Consensus        70 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--g~t~L~~A~~~~~~---~~~  144 (264)
                      ..   ......+++.|+..|+.+++++|+++|++++.                 ++..  +.||||.|+..+..   +++
T Consensus       334 ~~---r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~-----------------kD~~g~~~TpLh~A~~n~~~~v~~Il  393 (631)
T PHA02792        334 LY---RFKHINKYFQKFDNRDPKVVEYILKNGNVVVE-----------------DDDNIINIMPLFPTLSIHESDVLSIL  393 (631)
T ss_pred             cc---cCCcchHHHHHHHcCCHHHHHHHHHcCCchhh-----------------hcCCCCChhHHHHHHHhccHhHHHHH
Confidence            21   11234556677777777777777777776543                 6655  46899987776554   468


Q ss_pred             HHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHh---cCC-------hHHHHHH
Q 047844          145 KILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVC---SRS-------CAASRCH  214 (264)
Q Consensus       145 ~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~---~~~-------~~~~~~l  214 (264)
                      ++|++.|+++ +.+|..|+||||+|+..++.+++++|+++|++++.++..|.||+++|+.   .++       .++++.+
T Consensus       394 klLIs~GADI-N~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lL  472 (631)
T PHA02792        394 KLCKPYIDDI-NKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEII  472 (631)
T ss_pred             HHHHhcCCcc-ccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            8889999996 7899999999999999999999999999999999999999999999975   232       3446666


Q ss_pred             Hhhh
Q 047844          215 KLHR  218 (264)
Q Consensus       215 ~~~~  218 (264)
                      +.++
T Consensus       473 Ls~~  476 (631)
T PHA02792        473 LSKL  476 (631)
T ss_pred             HhcC
Confidence            6655

>PHA02792 ankyrin-like protein; Provisional

Probab=99.88  E-value=1.4e-21  Score=168.39  Aligned_cols=206  Identities=10%  Similarity=0.016  Sum_probs=158.5

Q ss_pred             HHHHH-HHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHh-hhcCcCCCcccHHHHHHHHHhCCc------------
Q 047844            4 DLYEA-AAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIAS-YTQNKEGESVSTKFVERIIEMCPS------------   69 (264)
Q Consensus         4 ~l~~A-~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~-~g~~~~~~~~~~~~~~~ll~~~~~------------   69 (264)
                      ++|+- ...|++|+++.|++.+...+.++..|.+|+|+|+  . .++        .+++++|++.|++            
T Consensus        74 ~~~~~~s~n~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~--~~~~~--------~eivk~Ll~~Gad~~~~~~~g~~~~  143 (631)
T PHA02792         74 IFEYLCSDNIDIELLKLLISKGLEINSIKNGINIVEKYAT--TSNPN--------VDVFKLLLDKGIPTCSNIQYGYKII  143 (631)
T ss_pred             HHHHHHHhcccHHHHHHHHHcCCCcccccCCCCcceeEee--cCCCC--------hHHHHHHHHCCCCcccccccCcchh
Confidence            56554 4589999999999954444457888899999996  5 688        9999999999865            


Q ss_pred             -----------------------cceecCCCCChHHHHHHHhC-------CHHHHHHHHHHhhhcchhhhhhc-------
Q 047844           70 -----------------------LLLQVNAKGDAPLHVAARYG-------HAAVVEALIEIAKQESDQEIESG-------  112 (264)
Q Consensus        70 -----------------------~~~~~~~~g~t~L~~A~~~g-------~~~~v~~Ll~~~~~~~~~~~~~~-------  112 (264)
                                             .++..|..|.||||+|+..+       +.++++.|+++|++++..+..+.       
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~  223 (631)
T PHA02792        144 IEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYV  223 (631)
T ss_pred             hhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHH
Confidence                                   12345667999999999999       89999999999987755431000       


Q ss_pred             ----------------------------------h-------h-------------------------------------
Q 047844          113 ----------------------------------V-------E-------------------------------------  114 (264)
Q Consensus       113 ----------------------------------~-------~-------------------------------------  114 (264)
                                                        +       .                                     
T Consensus       224 ~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  303 (631)
T PHA02792        224 DKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYT  303 (631)
T ss_pred             HcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHh
Confidence                                              0       0                                     


Q ss_pred             hHHHHH------------------hc----CCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCC--CCHHHHHH
Q 047844          115 STARHM------------------LG----MKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSG--ETPLYLAA  170 (264)
Q Consensus       115 ~~~~~~------------------l~----~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g--~t~Lh~A~  170 (264)
                      ..++.+                  ++    ........+++.|+..|+.+++++|+++|+++ +.+|..|  .||||+|+
T Consensus       304 ~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADI-N~kD~~g~~~TpLh~A~  382 (631)
T PHA02792        304 DSIQDLLSEYVSYHTVYINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVV-VEDDDNIINIMPLFPTL  382 (631)
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCch-hhhcCCCCChhHHHHHH
Confidence            001111                  11    11112455788999999999999999999996 6777664  69999987


Q ss_pred             HhChH---HHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhCC
Q 047844          171 ARAHK---EISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSS  220 (264)
Q Consensus       171 ~~~~~---~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~  220 (264)
                      .....   +++++|+++|++++.+|..|.||||+|+..++.+++++|+.+++.
T Consensus       383 ~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GAD  435 (631)
T PHA02792        383 SIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGAD  435 (631)
T ss_pred             HhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCC
Confidence            76654   467889999999999999999999999999999999999999875

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.87  E-value=4.2e-21  Score=153.80  Aligned_cols=153  Identities=16%  Similarity=0.087  Sum_probs=127.6

Q ss_pred             cCCCCCch-hHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceec----CCCCChHHHHHHHhCCHHHHHHHHHHhhhc
Q 047844           30 VTHKKNTV-LHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQV----NAKGDAPLHVAARYGHAAVVEALIEIAKQE  104 (264)
Q Consensus        30 ~~~~g~t~-L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~----~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~  104 (264)
                      .|..|.|+ ||.|+  ..|+        .+++++|++.|++ ++.+    +..|.||||+|+..++.+++++|+++|+++
T Consensus        28 ~d~~~~~~lL~~A~--~~~~--------~eivk~LL~~GAd-iN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADV   96 (300)
T PHA02884         28 KNKICIANILYSSI--KFHY--------TDIIDAILKLGAD-PEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADV   96 (300)
T ss_pred             cCcCCCCHHHHHHH--HcCC--------HHHHHHHHHCCCC-ccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence            57777765 55566  7788        9999999999998 6665    458999999999999999999999999986


Q ss_pred             chhhhhhchhhHHHHHhcCC-CCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHh
Q 047844          105 SDQEIESGVESTARHMLGMK-NDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQ  183 (264)
Q Consensus       105 ~~~~~~~~~~~~~~~~l~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~  183 (264)
                      +.                 + +..|.||||.|+..|+.+++++|++.|+++ +.+|..|.||||+|+..++..++.++. 
T Consensus        97 N~-----------------~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdi-n~kd~~G~TpL~~A~~~~~~~~~~~~~-  157 (300)
T PHA02884         97 NR-----------------YAEEAKITPLYISVLHGCLKCLEILLSYGADI-NIQTNDMVTPIELALMICNNFLAFMIC-  157 (300)
T ss_pred             Cc-----------------ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHhCChhHHHHhc-
Confidence            54                 4 457999999999999999999999999996 788999999999999988888875554 


Q ss_pred             hCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhC
Q 047844          184 KCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRS  219 (264)
Q Consensus       184 ~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~  219 (264)
                       |..   .+..+.+|..++   ++.++++.|..+..
T Consensus       158 -~~~---~~~~~~~~~~~~---~n~ei~~~Lish~v  186 (300)
T PHA02884        158 -DNE---ISNFYKHPKKIL---INFDILKILVSHFI  186 (300)
T ss_pred             -CCc---ccccccChhhhh---ccHHHHHHHHHHHH
Confidence             322   455667888875   36889999888876

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.87  E-value=7.4e-22  Score=145.62  Aligned_cols=132  Identities=18%  Similarity=0.163  Sum_probs=109.8

Q ss_pred             cCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHh----CCccceecCCCCChHHHHHHHhCCH---HHHHHHHHHhh
Q 047844           30 VTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEM----CPSLLLQVNAKGDAPLHVAARYGHA---AVVEALIEIAK  102 (264)
Q Consensus        30 ~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~----~~~~~~~~~~~g~t~L~~A~~~g~~---~~v~~Ll~~~~  102 (264)
                      .|..|.||||+|+  ..|+        ...+......    ....++..|..|.||||+|+..|+.   +++++|++.|+
T Consensus        13 ~d~~g~tpLh~A~--~~g~--------~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~ga   82 (154)
T PHA02736         13 PDIEGENILHYLC--RNGG--------VTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGA   82 (154)
T ss_pred             cCCCCCCHHHHHH--HhCC--------HHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCC
Confidence            6889999999999  9998        5433222221    1223456789999999999999986   46889999998


Q ss_pred             hcchhhhhhchhhHHHHHhcCCC-CCCCChhhHHHhcCCHHHHHHHhc-CCCCCCCCCCCCCCCHHHHHHHhChHHHHHH
Q 047844          103 QESDQEIESGVESTARHMLGMKN-DEEDTALHEAVQSGSLDVVKILLG-ADPAFPYSANGSGETPLYLAAARAHKEISAE  180 (264)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~l~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~  180 (264)
                      +++.                 ++ ..|.||||+|+..|+.+++++|++ .|+++ +..|..|+||||+|+..++.+++++
T Consensus        83 din~-----------------~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~-n~~~~~g~tpL~~A~~~~~~~i~~~  144 (154)
T PHA02736         83 DING-----------------KERVFGNTPLHIAVYTQNYELATWLCNQPGVNM-EILNYAFKTPYYVACERHDAKMMNI  144 (154)
T ss_pred             Cccc-----------------cCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC-ccccCCCCCHHHHHHHcCCHHHHHH
Confidence            8544                 76 589999999999999999999997 58885 7889999999999999999999999


Q ss_pred             HHhhCCCCC
Q 047844          181 ILQKCPSPA  189 (264)
Q Consensus       181 Ll~~ga~~~  189 (264)
                      |+++|++.+
T Consensus       145 Ll~~ga~~~  153 (154)
T PHA02736        145 LRAKGAQCK  153 (154)
T ss_pred             HHHcCCCCC
Confidence            999998875

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.87  E-value=9.3e-22  Score=167.73  Aligned_cols=190  Identities=26%  Similarity=0.262  Sum_probs=166.0

Q ss_pred             CcHHHHHHHcCCchHHhhhhhh-------------cccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCC
Q 047844            2 NSDLYEAAAKGEIEPFNQLAID-------------RQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCP   68 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~-------------~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~   68 (264)
                      .+-|-.|+..|+++.+..|++.             ....+..|.+|+|.||.|+  ..|+        .++.+.|++..+
T Consensus         4 ~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~--Lng~--------~~is~llle~ea   73 (854)
T KOG0507|consen    4 KQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAV--LNGQ--------NQISKLLLDYEA   73 (854)
T ss_pred             hhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHH--hcCc--------hHHHHHHhcchh
Confidence            4557789999999999999981             1223336789999999999  9999        999999999998


Q ss_pred             ccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHh
Q 047844           69 SLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILL  148 (264)
Q Consensus        69 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll  148 (264)
                      - ++..|..|.+|||+|+..|+.++++.++..+..                 +|..+..|.||||.|++.|+.+++.+|+
T Consensus        74 ~-ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~-----------------~na~~~e~~tplhlaaqhgh~dvv~~Ll  135 (854)
T KOG0507|consen   74 L-LDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDI-----------------LNAVNIENETPLHLAAQHGHLEVVFYLL  135 (854)
T ss_pred             h-hhhhhccCcceEEehhhcCcchHHHHHHhcccC-----------------CCcccccCcCccchhhhhcchHHHHHHH
Confidence            8 788899999999999999999999999998854                 4558899999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCC--------CcCCCCCccHHhHHHhcCChHHHHHHHhhhCC
Q 047844          149 GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSP--------AHEGPNGKTALHAAVCSRSCAASRCHKLHRSS  220 (264)
Q Consensus       149 ~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~--------~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~  220 (264)
                      ++|++ ....|..+.|++.+|++.|..+++++|++....+        ..++..+.+|+|+|+++|+.++++.|+..+..
T Consensus       136 ~~~ad-p~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~d  214 (854)
T KOG0507|consen  136 KKNAD-PFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFD  214 (854)
T ss_pred             hcCCC-ccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCC
Confidence            99999 4789999999999999999999999999863221        23455678999999999999999999988765

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.86  E-value=5.1e-21  Score=135.97  Aligned_cols=144  Identities=22%  Similarity=0.223  Sum_probs=127.7

Q ss_pred             chhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhh
Q 047844           36 TVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVES  115 (264)
Q Consensus        36 t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~  115 (264)
                      -.+.+|+  ..+.        ...|+.|++..++.++.+|.+|+||||-|+.+|+.+|++.|+..|+++..         
T Consensus        65 rl~lwaa--e~nr--------l~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a---------  125 (228)
T KOG0512|consen   65 RLLLWAA--EKNR--------LTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEA---------  125 (228)
T ss_pred             HHHHHHH--hhcc--------HHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCccc---------
Confidence            4577889  9999        99999999999999999999999999999999999999999999999876         


Q ss_pred             HHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHH-HHHHHH-hhCCCCCcCCC
Q 047844          116 TARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKE-ISAEIL-QKCPSPAHEGP  193 (264)
Q Consensus       116 ~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~-~~~~Ll-~~ga~~~~~~~  193 (264)
                              +...|+||||.||.-++.+++..|++.|+++ +.......||||+|+...+.. .+.+|+ ..+.++..++.
T Consensus       126 --------~T~~GWTPLhSAckWnN~~va~~LLqhgaDV-nA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn  196 (228)
T KOG0512|consen  126 --------KTNEGWTPLHSACKWNNFEVAGRLLQHGADV-NAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNN  196 (228)
T ss_pred             --------ccccCccchhhhhcccchhHHHHHHhccCcc-cccccccchhhHHhhcccchHHHHHHHhhccccChhhhcC
Confidence                    8899999999999999999999999999997 677778899999999876654 555555 34678888999


Q ss_pred             CCccHHhHHHhcCC
Q 047844          194 NGKTALHAAVCSRS  207 (264)
Q Consensus       194 ~g~tpl~~A~~~~~  207 (264)
                      .+.||+.+|-..+-
T Consensus       197 ~eeta~~iARRT~~  210 (228)
T KOG0512|consen  197 LEETAFDIARRTSM  210 (228)
T ss_pred             ccchHHHHHHHhhh
Confidence            99999999976653

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.86  E-value=1e-20  Score=151.61  Aligned_cols=130  Identities=12%  Similarity=0.100  Sum_probs=110.8

Q ss_pred             eecCCCCCh-HHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcC
Q 047844           72 LQVNAKGDA-PLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGA  150 (264)
Q Consensus        72 ~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  150 (264)
                      -.+|..|.| +||.|+..|+.+++++|+++|++++..+             ...+..|.||||+|+..|+.+++++|+++
T Consensus        26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~-------------~~sd~~g~TpLh~Aa~~~~~eivklLL~~   92 (300)
T PHA02884         26 KKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPF-------------PLSENSKTNPLIYAIDCDNDDAAKLLIRY   92 (300)
T ss_pred             hccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccC-------------cccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            345666665 5666777789999999999999865410             00246899999999999999999999999


Q ss_pred             CCCCCCCC-CCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHH
Q 047844          151 DPAFPYSA-NGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHK  215 (264)
Q Consensus       151 g~~~~~~~-~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~  215 (264)
                      |+++ +.. +..|.||||.|+..++.+++++|+.+|++++.+|..|.||+|+|+..++.+++..+.
T Consensus        93 GADV-N~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~  157 (300)
T PHA02884         93 GADV-NRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC  157 (300)
T ss_pred             CCCc-CcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc
Confidence            9997 554 568999999999999999999999999999999999999999999999888876654

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.86  E-value=8.6e-21  Score=163.48  Aligned_cols=213  Identities=15%  Similarity=0.121  Sum_probs=168.2

Q ss_pred             cHHHHHHHcCCchHHhhhhhhc---------ccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCcccee
Q 047844            3 SDLYEAAAKGEIEPFNQLAIDR---------QLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ   73 (264)
Q Consensus         3 ~~l~~A~~~g~~~~~~~l~~~~---------~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~   73 (264)
                      .++..|...+.++.+..+....         ...+.+-..|.|.||.|.++....  .     .++++.|++..+..++.
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~--~-----n~la~~LL~~~p~lind  175 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDG--H-----NELARVLLEIFPKLIND  175 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchh--H-----HHHHHHHHHHhHHHhhh
Confidence            4567778888888888877622         122224556999999999433333  1     58999999987776554


Q ss_pred             c----CCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcC------CCCCCCChhhHHHhcCCHHH
Q 047844           74 V----NAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGM------KNDEEDTALHEAVQSGSLDV  143 (264)
Q Consensus        74 ~----~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~g~t~L~~A~~~~~~~~  143 (264)
                      .    ...|+||||+|+.+.+.++|++|++.|++++.+.........-+.--+.      .-..|..||.+||.-++.++
T Consensus       176 ~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~ei  255 (782)
T KOG3676|consen  176 IYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEI  255 (782)
T ss_pred             hhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHH
Confidence            3    3579999999999999999999999999998876533322211100000      11358899999999999999


Q ss_pred             HHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCC--CCcCCCCCccHHhHHHhcCChHHHHHHHhh-hCC
Q 047844          144 VKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPS--PAHEGPNGKTALHAAVCSRSCAASRCHKLH-RSS  220 (264)
Q Consensus       144 ~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~--~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~-~~~  220 (264)
                      +++|+++|+|+ +.+|.+|+|.||..+..-..++.++++++|++  ....|..|.|||-+|++.|..++.+.+++. +..
T Consensus       256 vrlLl~~gAd~-~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~~k~~  334 (782)
T KOG3676|consen  256 VRLLLAHGADP-NAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILERRKFT  334 (782)
T ss_pred             HHHHHhcCCCC-CccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHhhccc
Confidence            99999999995 89999999999999999999999999999999  889999999999999999999999999988 444


Q ss_pred             CCC
Q 047844          221 RFL  223 (264)
Q Consensus       221 ~~~  223 (264)
                      .|-
T Consensus       335 ~W~  337 (782)
T KOG3676|consen  335 DWA  337 (782)
T ss_pred             cee
Confidence            443

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.83  E-value=9.5e-20  Score=129.54  Aligned_cols=140  Identities=21%  Similarity=0.188  Sum_probs=124.4

Q ss_pred             HHHHHHcCCchHHhhhhh-hcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHH
Q 047844            5 LYEAAAKGEIEPFNQLAI-DRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLH   83 (264)
Q Consensus         5 l~~A~~~g~~~~~~~l~~-~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~   83 (264)
                      +..|+..+.+..|+.|++ +.+..+.+|.+|.||||-|+  .+|+        .++++.|+..+++ .+.+...||||||
T Consensus        67 ~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAa--Yn~h--------~div~~ll~~gAn-~~a~T~~GWTPLh  135 (228)
T KOG0512|consen   67 LLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAA--YNGH--------LDIVHELLLSGAN-KEAKTNEGWTPLH  135 (228)
T ss_pred             HHHHHhhccHHHHHHHHHhccccccccccccccHHHHHH--hcCc--------hHHHHHHHHccCC-cccccccCccchh
Confidence            568999999999999998 78888889999999999999  9999        9999999999999 8899999999999


Q ss_pred             HHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhc-CCHHHHHHHhc-CCCCCCCCCCCC
Q 047844           84 VAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQS-GSLDVVKILLG-ADPAFPYSANGS  161 (264)
Q Consensus        84 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~-~g~~~~~~~~~~  161 (264)
                      .||.-.+.+++.+||++|++++.                 ......||||+|+.. +....+++|+. .+.. ...++..
T Consensus       136 SAckWnN~~va~~LLqhgaDVnA-----------------~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~-pg~~nn~  197 (228)
T KOG0512|consen  136 SACKWNNFEVAGRLLQHGADVNA-----------------QTKGLLTPLHLAAGNRNSRDTLELLLHDRYIH-PGLKNNL  197 (228)
T ss_pred             hhhcccchhHHHHHHhccCcccc-----------------cccccchhhHHhhcccchHHHHHHHhhccccC-hhhhcCc
Confidence            99999999999999999999665                 888899999999986 45677888875 4544 4677889


Q ss_pred             CCCHHHHHHHhC
Q 047844          162 GETPLYLAAARA  173 (264)
Q Consensus       162 g~t~Lh~A~~~~  173 (264)
                      +.||+.+|-+.+
T Consensus       198 eeta~~iARRT~  209 (228)
T KOG0512|consen  198 EETAFDIARRTS  209 (228)
T ss_pred             cchHHHHHHHhh
Confidence            999999997654

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.81  E-value=2.6e-20  Score=142.78  Aligned_cols=127  Identities=28%  Similarity=0.335  Sum_probs=115.2

Q ss_pred             HHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhc
Q 047844           59 FVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQS  138 (264)
Q Consensus        59 ~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~  138 (264)
                      -++..++.-...+|..|..|.+|||||+..|+..+++.|+..|+.++.                 .+....||||+|+..
T Consensus        15 qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~-----------------tnmgddtplhlaaah   77 (448)
T KOG0195|consen   15 QVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNS-----------------TNMGDDTPLHLAAAH   77 (448)
T ss_pred             EEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhccccccc-----------------ccCCCCcchhhhhhc
Confidence            344445555555888999999999999999999999999999999655                 778889999999999


Q ss_pred             CCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHH
Q 047844          139 GSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAV  203 (264)
Q Consensus       139 ~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~  203 (264)
                      |+.+++..|++..+++ +..+..|+||||+||..|.-.+.+-|+..|+.+++.++.|.||++.|-
T Consensus        78 ghrdivqkll~~kadv-navnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen   78 GHRDIVQKLLSRKADV-NAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             ccHHHHHHHHHHhccc-chhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhc
Confidence            9999999999999996 799999999999999999999999999999999999999999999874

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.81  E-value=3.1e-19  Score=147.30  Aligned_cols=156  Identities=26%  Similarity=0.237  Sum_probs=141.5

Q ss_pred             hhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhH
Q 047844           37 VLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVEST  116 (264)
Q Consensus        37 ~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~  116 (264)
                      .+.-||  ..|.        ++-+..|+..+.+ ++..+.+|.|+||-+|.-.+.+||++|+++|++++.          
T Consensus        43 ~~l~A~--~~~d--------~~ev~~ll~~ga~-~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~----------  101 (527)
T KOG0505|consen   43 VFLEAC--SRGD--------LEEVRKLLNRGAS-PNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNA----------  101 (527)
T ss_pred             HHHhcc--cccc--------HHHHHHHhccCCC-ccccCCccchhHHHHHhcccHHHHHHHHHhcCCccc----------
Confidence            356677  8888        9999999999988 689999999999999999999999999999999554          


Q ss_pred             HHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCC-----------------------------------------
Q 047844          117 ARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFP-----------------------------------------  155 (264)
Q Consensus       117 ~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-----------------------------------------  155 (264)
                             .+..|+||||.|+.-|+..++++|++.|+++.                                         
T Consensus       102 -------~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e  174 (527)
T KOG0505|consen  102 -------QDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEE  174 (527)
T ss_pred             -------cccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhH
Confidence                   99999999999999999999999998887652                                         


Q ss_pred             -----------------CCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhh
Q 047844          156 -----------------YSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHR  218 (264)
Q Consensus       156 -----------------~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~  218 (264)
                                       ...+..|.|.||.|+.+|..++.++|++.|.+++.+|.+||+|||.|+..+..+++++|..++
T Consensus       175 ~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~g  254 (527)
T KOG0505|consen  175 QTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHG  254 (527)
T ss_pred             HHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhh
Confidence                             122336899999999999999999999999999999999999999999999999999999888


Q ss_pred             CC
Q 047844          219 SS  220 (264)
Q Consensus       219 ~~  220 (264)
                      ..
T Consensus       255 a~  256 (527)
T KOG0505|consen  255 AD  256 (527)
T ss_pred             cc
Confidence            64

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.79  E-value=1.3e-18  Score=116.13  Aligned_cols=89  Identities=31%  Similarity=0.433  Sum_probs=73.1

Q ss_pred             HHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCC
Q 047844           82 LHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGS  161 (264)
Q Consensus        82 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~  161 (264)
                      ||+|++.|+.+++++|++.+.+.                    +. |.||||+|+..|+.+++++|++.|+++ +.+|..
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~--------------------~~-~~~~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~   58 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI--------------------NL-GNTALHYAAENGNLEIVKLLLENGADI-NSQDKN   58 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT--------------------TS-SSBHHHHHHHTTTHHHHHHHHHTTTCT-T-BSTT
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC--------------------CC-CCCHHHHHHHcCCHHHHHHHHHhcccc-cccCCC
Confidence            68899999999999999876552                    22 778999999999999999999998885 677888


Q ss_pred             CCCHHHHHHHhChHHHHHHHHhhCCCCCcCC
Q 047844          162 GETPLYLAAARAHKEISAEILQKCPSPAHEG  192 (264)
Q Consensus       162 g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~  192 (264)
                      |+||||+|+..++.+++++|+++|++++.+|
T Consensus        59 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   59 GNTALHYAAENGNLEIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             SSBHHHHHHHTTHHHHHHHHHHTTT-TTSS-
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence            9999999999999999999999998888765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.78  E-value=6.6e-18  Score=119.67  Aligned_cols=124  Identities=29%  Similarity=0.442  Sum_probs=113.9

Q ss_pred             cCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCC
Q 047844           74 VNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPA  153 (264)
Q Consensus        74 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~  153 (264)
                      .+.+|.||||+|+..++.+++++|++.+.....                 .+..|.+|+|.|+..+..+++++|++.|+.
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~-----------------~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~   65 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNA-----------------KDNDGRTPLHLAAKNGHLEIVKLLLEKGAD   65 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCc-----------------cCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            467899999999999999999999999877433                 788999999999999999999999999976


Q ss_pred             CCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHH
Q 047844          154 FPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHK  215 (264)
Q Consensus       154 ~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~  215 (264)
                      . +..+..|.||+|+|+..++.+++++|++.+.+.+..+..+.||+++|...++.+++++|+
T Consensus        66 ~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          66 V-NARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             c-cccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            4 667889999999999999999999999999999999999999999999999999998863

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.77  E-value=3.6e-18  Score=131.18  Aligned_cols=153  Identities=21%  Similarity=0.206  Sum_probs=123.4

Q ss_pred             HHcCCchHHhhhhh-hcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHH
Q 047844            9 AAKGEIEPFNQLAI-DRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAAR   87 (264)
Q Consensus         9 ~~~g~~~~~~~l~~-~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~   87 (264)
                      |..|+.=-|+.-++ ..+..+.-|..|++|||+||  ..|+        ..+++.|++.|+. +|..+....||||+|+.
T Consensus         8 cregna~qvrlwld~tehdln~gddhgfsplhwaa--kegh--------~aivemll~rgar-vn~tnmgddtplhlaaa   76 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAA--KEGH--------VAIVEMLLSRGAR-VNSTNMGDDTPLHLAAA   76 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccccccCcchhhhhh--hccc--------HHHHHHHHhcccc-cccccCCCCcchhhhhh
Confidence            45555545555555 23333447889999999999  9999        9999999999999 78888888999999999


Q ss_pred             hCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHH
Q 047844           88 YGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLY  167 (264)
Q Consensus        88 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh  167 (264)
                      .|+-++++.|++..++++.                 .+..|+||||+||.-|.-.+++-|+..|+.+ +.-+..|.||+.
T Consensus        77 hghrdivqkll~~kadvna-----------------vnehgntplhyacfwgydqiaedli~~ga~v-~icnk~g~tpld  138 (448)
T KOG0195|consen   77 HGHRDIVQKLLSRKADVNA-----------------VNEHGNTPLHYACFWGYDQIAEDLISCGAAV-NICNKKGMTPLD  138 (448)
T ss_pred             cccHHHHHHHHHHhcccch-----------------hhccCCCchhhhhhhcHHHHHHHHHhcccee-eecccCCCCchh
Confidence            9999999999999988655                 8999999999999999999999999999996 788999999998


Q ss_pred             HHHHhChHHHHHHHHhhCCCCCc
Q 047844          168 LAAARAHKEISAEILQKCPSPAH  190 (264)
Q Consensus       168 ~A~~~~~~~~~~~Ll~~ga~~~~  190 (264)
                      .|.-.-...+.+.--++|-+++.
T Consensus       139 kakp~l~~~l~e~aek~gq~~nr  161 (448)
T KOG0195|consen  139 KAKPMLKNTLLEIAEKHGQSPNR  161 (448)
T ss_pred             hhchHHHHHHHHHHHHhCCCCCc
Confidence            87443222333333345655543

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.76  E-value=2.4e-17  Score=116.79  Aligned_cols=124  Identities=31%  Similarity=0.478  Sum_probs=112.8

Q ss_pred             cCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhh
Q 047844           30 VTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEI  109 (264)
Q Consensus        30 ~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~  109 (264)
                      .+..|.||||.|+  ..|+        .+++++|++.+.. .+..+..|.+|||.|+..++.+++++|+..+...+    
T Consensus         3 ~~~~g~t~l~~a~--~~~~--------~~~i~~li~~~~~-~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~----   67 (126)
T cd00204           3 RDEDGRTPLHLAA--SNGH--------LEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVN----   67 (126)
T ss_pred             cCcCCCCHHHHHH--HcCc--------HHHHHHHHHcCCC-CCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcc----
Confidence            5788999999999  9999        9999999999988 47888999999999999999999999999987543    


Q ss_pred             hhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHH
Q 047844          110 ESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEIL  182 (264)
Q Consensus       110 ~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll  182 (264)
                                   ..+..|.||+|+|+..++.+++++|++.+.+. +..+..+.||++.|...++.+++++|+
T Consensus        68 -------------~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          68 -------------ARDKDGNTPLHLAARNGNLDVVKLLLKHGADV-NARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             -------------ccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence                         37788999999999999999999999999775 678889999999999999999998874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.73  E-value=3.5e-18  Score=151.23  Aligned_cols=211  Identities=17%  Similarity=0.156  Sum_probs=177.8

Q ss_pred             CCcHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCCh
Q 047844            1 MNSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDA   80 (264)
Q Consensus         1 ~~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t   80 (264)
                      ++|+|-.||..|+.|.++.|+..+.....+|..|++||.+|+  ..||        ...|+.|+.+..++--..|..+.|
T Consensus       757 ~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaa--tagh--------~tvV~~llk~ha~veaQsdrtkdt  826 (2131)
T KOG4369|consen  757 IKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAA--TAGH--------ITVVQDLLKAHADVEAQSDRTKDT  826 (2131)
T ss_pred             ccccccccccCccHHHHHHHHHhcccccccccccchhhhhhc--ccCc--------hHHHHHHHhhhhhhhhhcccccCc
Confidence            468999999999999999999854444558999999999999  9999        999999999998855557888999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHhhhcchhhh----------hhchhhHHHHHh------cC--CCCCCCChhhHHHhcCCHH
Q 047844           81 PLHVAARYGHAAVVEALIEIAKQESDQEI----------ESGVESTARHML------GM--KNDEEDTALHEAVQSGSLD  142 (264)
Q Consensus        81 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~----------~~~~~~~~~~~l------~~--~~~~g~t~L~~A~~~~~~~  142 (264)
                      +|.+||..|+.+++++||..|++...++.          ..++..++..++      |.  ..+-|.+||.+|...|+.+
T Consensus       827 ~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~  906 (2131)
T KOG4369|consen  827 MLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQA  906 (2131)
T ss_pred             eEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccH
Confidence            99999999999999999999987765432          344444555444      21  2345788999999999999


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhCCC
Q 047844          143 VVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSSR  221 (264)
Q Consensus       143 ~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~  221 (264)
                      ..+.|++.|.++......+-+|+|.+|+..|..+++..||.+.+++..+-+.|.|||+-++..|..|+-+.|+..++..
T Consensus       907 at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~  985 (2131)
T KOG4369|consen  907 ATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADT  985 (2131)
T ss_pred             HHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhccccc
Confidence            9999999998876666777889999999999999999999999999999999999999999999999999999888763

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.73  E-value=5.6e-17  Score=108.17  Aligned_cols=84  Identities=30%  Similarity=0.358  Sum_probs=77.3

Q ss_pred             hhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHH
Q 047844          132 LHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAAS  211 (264)
Q Consensus       132 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~  211 (264)
                      ||+|++.|+.+++++|++.+.++. .    |+||||+|+..|+.+++++|++.|++++.++.+|+||||+|+.+++.+++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~-~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~   75 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADIN-L----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIV   75 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTT-S----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCC-C----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHH
Confidence            789999999999999999988753 2    89999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhCC
Q 047844          212 RCHKLHRSS  220 (264)
Q Consensus       212 ~~l~~~~~~  220 (264)
                      ++|+.++..
T Consensus        76 ~~Ll~~g~~   84 (89)
T PF12796_consen   76 KLLLEHGAD   84 (89)
T ss_dssp             HHHHHTTT-
T ss_pred             HHHHHcCCC
Confidence            999988654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.70  E-value=8.8e-18  Score=148.72  Aligned_cols=215  Identities=19%  Similarity=0.193  Sum_probs=173.8

Q ss_pred             CcHHHHHHHcCCchHHhhhhh-hcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCCh
Q 047844            2 NSDLYEAAAKGEIEPFNQLAI-DRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDA   80 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~-~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t   80 (264)
                      .+||.+|+..|+...|+.|+. ..+.....|..+.|+|.+||  ..|+        .+.++.|+..+.+ -..++...+|
T Consensus       791 f~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlac--sggr--------~~vvelLl~~gan-kehrnvsDyt  859 (2131)
T KOG4369|consen  791 FVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLAC--SGGR--------TRVVELLLNAGAN-KEHRNVSDYT  859 (2131)
T ss_pred             chhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEec--CCCc--------chHHHHHHHhhcc-ccccchhhcC
Confidence            368999999999999999998 33443347889999999999  9999        9999999999988 6678888899


Q ss_pred             HHHHHHHhCCHHHHHHHHHHhhhcchhhhh------------hchhhHHHHHh------cC-CCCCCCChhhHHHhcCCH
Q 047844           81 PLHVAARYGHAAVVEALIEIAKQESDQEIE------------SGVESTARHML------GM-KNDEEDTALHEAVQSGSL  141 (264)
Q Consensus        81 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~------------~~~~~~~~~~l------~~-~~~~g~t~L~~A~~~~~~  141 (264)
                      ||.+|...|..+++..|+..|+.++.+.-.            .+.......++      |. ...+.+|.|-+|+..|+.
T Consensus       860 Plsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~  939 (2131)
T KOG4369|consen  860 PLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRP  939 (2131)
T ss_pred             chhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcc
Confidence            999999999999999999999888776421            12222222232      22 234678999999999999


Q ss_pred             HHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcC--CCCCccHHhHHHhcCChHHHHHHHhhhC
Q 047844          142 DVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHE--GPNGKTALHAAVCSRSCAASRCHKLHRS  219 (264)
Q Consensus       142 ~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~--~~~g~tpl~~A~~~~~~~~~~~l~~~~~  219 (264)
                      +++.+|+...+.+ ..+-..|-|||+-++..|..++-++|+..|+|.+..  -..-.|++-+++..|+...+..|+...+
T Consensus       940 evv~lLLa~~anv-ehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~a 1018 (2131)
T KOG4369|consen  940 EVVFLLLAAQANV-EHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDA 1018 (2131)
T ss_pred             hHHHHHHHHhhhh-hhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCcc
Confidence            9999999988875 567788999999999999999999999999998873  2345688999999999999999887665


Q ss_pred             CCCCCCCcc
Q 047844          220 SRFLPSPRS  228 (264)
Q Consensus       220 ~~~~~~~~~  228 (264)
                      ....++...
T Consensus      1019 tv~v~NkkG 1027 (2131)
T KOG4369|consen 1019 TVRVPNKKG 1027 (2131)
T ss_pred             ceecccCCC
Confidence            544444333

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.66  E-value=5.5e-15  Score=115.64  Aligned_cols=131  Identities=27%  Similarity=0.357  Sum_probs=120.7

Q ss_pred             ceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCC-----HHHHH
Q 047844           71 LLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGS-----LDVVK  145 (264)
Q Consensus        71 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~-----~~~~~  145 (264)
                      ....+..+.++++.++..+..+++++++..+.+++.                 ++..|.||||+|+..++     .++++
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------------~~~~g~t~l~~a~~~~~~~~~~~~~~~  128 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNA-----------------KDADGDTPLHLAALNGNPPEGNIEVAK  128 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCccc-----------------ccCCCCcHHHHHHhcCCcccchHHHHH
Confidence            445667789999999999999999999999988644                 89999999999999999     99999


Q ss_pred             HHhcCCC--CCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhh
Q 047844          146 ILLGADP--AFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHR  218 (264)
Q Consensus       146 ~Ll~~g~--~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~  218 (264)
                      +|++.|+  +..+..|..|+||||+|+..|+.++++.|++.|++++..+..|.|+++.|+..++.++++.+...+
T Consensus       129 ~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         129 LLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             HHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            9999999  566778999999999999999999999999999999999999999999999999999999988754

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.64  E-value=1e-15  Score=97.59  Aligned_cols=100  Identities=19%  Similarity=0.281  Sum_probs=56.2

Q ss_pred             HHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCC
Q 047844           82 LHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGS  161 (264)
Q Consensus        82 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~  161 (264)
                      +.|++.+|..+-|+.....|.+++.                  ...|++|||+|+-.|+.+++++|+..|+++ +.+|..
T Consensus         6 ~~W~vkNG~~DeVk~~v~~g~nVn~------------------~~ggR~plhyAAD~GQl~ilefli~iGA~i-~~kDKy   66 (117)
T KOG4214|consen    6 VAWNVKNGEIDEVKQSVNEGLNVNE------------------IYGGRTPLHYAADYGQLSILEFLISIGANI-QDKDKY   66 (117)
T ss_pred             HhhhhccCcHHHHHHHHHccccHHH------------------HhCCcccchHhhhcchHHHHHHHHHhcccc-CCcccc
Confidence            3455555655555555555433221                  124556666666666666666666666654 455666


Q ss_pred             CCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHh
Q 047844          162 GETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALH  200 (264)
Q Consensus       162 g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~  200 (264)
                      |-|||..|+..|+.+|+++|++.|++-..+..+|.+.+.
T Consensus        67 gITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~e  105 (117)
T KOG4214|consen   67 GITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGTALIE  105 (117)
T ss_pred             CCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCchhHHh
Confidence            666666666666666666666666665555555555444

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.63  E-value=2.3e-15  Score=130.39  Aligned_cols=155  Identities=22%  Similarity=0.231  Sum_probs=129.5

Q ss_pred             CcHHHHHHH---cCCchHHhhhhh-hcccc----cccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCcccee
Q 047844            2 NSDLYEAAA---KGEIEPFNQLAI-DRQLG----SLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ   73 (264)
Q Consensus         2 ~~~l~~A~~---~g~~~~~~~l~~-~~~~~----~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~   73 (264)
                      .|.||.|.-   .++-++++.|++ .+...    ......|.||||+|+  .+.+        .++|++|++.|++ ++.
T Consensus       144 ET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAI--v~~~--------~~~V~lLl~~gAD-V~a  212 (782)
T KOG3676|consen  144 ETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAI--VNRD--------AELVRLLLAAGAD-VHA  212 (782)
T ss_pred             hhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHH--Hhcc--------HHHHHHHHHcCCc-hhh
Confidence            367888887   344488888888 22221    113456999999999  9999        9999999999888 443


Q ss_pred             c---------C--------------CCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCC
Q 047844           74 V---------N--------------AKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDT  130 (264)
Q Consensus        74 ~---------~--------------~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t  130 (264)
                      +         |              .-|..||.+|+..++.+|+++|+++|++++.                 +|..|+|
T Consensus       213 Ra~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~a-----------------qDS~GNT  275 (782)
T KOG3676|consen  213 RACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNA-----------------QDSNGNT  275 (782)
T ss_pred             HhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCc-----------------cccCCCh
Confidence            2         1              1378999999999999999999999999776                 9999999


Q ss_pred             hhhHHHhcCCHHHHHHHhcCCCC-CCCCCCCCCCCHHHHHHHhChHHHHHHHHhh
Q 047844          131 ALHEAVQSGSLDVVKILLGADPA-FPYSANGSGETPLYLAAARAHKEISAEILQK  184 (264)
Q Consensus       131 ~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~  184 (264)
                      .||..+..-..++..++++.|+. .....|.+|-|||.+|++.|..++.+.+++.
T Consensus       276 VLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  276 VLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            99999999999999999999987 2256789999999999999999999999987

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.62  E-value=3.7e-15  Score=95.07  Aligned_cols=97  Identities=20%  Similarity=0.172  Sum_probs=86.6

Q ss_pred             ChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChH
Q 047844          130 TALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCA  209 (264)
Q Consensus       130 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~  209 (264)
                      ..+.|++++|.++-++-.+..|.++...  ..|++|||+|+..|+.+++++|+..|++++.+|++|.|||..|+..|+.+
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~--~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~   81 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEI--YGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRD   81 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHH--hCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHH
Confidence            3577899999999999999999776433  37999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhCCCCCCCCcc
Q 047844          210 ASRCHKLHRSSRFLPSPRS  228 (264)
Q Consensus       210 ~~~~l~~~~~~~~~~~~~~  228 (264)
                      +|++|+..++.+....|..
T Consensus        82 cVklLL~~GAdrt~~~PdG  100 (117)
T KOG4214|consen   82 CVKLLLQNGADRTIHAPDG  100 (117)
T ss_pred             HHHHHHHcCcccceeCCCc
Confidence            9999999999876655543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.59  E-value=1.9e-14  Score=112.58  Aligned_cols=128  Identities=29%  Similarity=0.357  Sum_probs=117.9

Q ss_pred             cCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCC-----HHHHHHHHHHhh--
Q 047844           30 VTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGH-----AAVVEALIEIAK--  102 (264)
Q Consensus        30 ~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~-----~~~v~~Ll~~~~--  102 (264)
                      .+..+.++++.++  ..+.        ..++++++..+.+. +..+..|.||||+|+..++     .++++.|++.|+  
T Consensus        69 ~~~~~~~~~~~~~--~~~~--------~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~  137 (235)
T COG0666          69 RDLDGRLPLHSAA--SKGD--------DKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADL  137 (235)
T ss_pred             CCccccCHHHHHH--HcCc--------HHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCC
Confidence            4566899999999  9999        99999999999995 9999999999999999999     999999999999  


Q ss_pred             hcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHH
Q 047844          103 QESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEIL  182 (264)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll  182 (264)
                      ..                .+.++..|.||||+|+..|+.++++.|++.|++. +..+..|.|+++.|+..++.++++.++
T Consensus       138 ~~----------------~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~l~  200 (235)
T COG0666         138 DV----------------NNLRDEDGNTPLHWAALNGDADIVELLLEAGADP-NSRNSYGVTALDPAAKNGRIELVKLLL  200 (235)
T ss_pred             CC----------------ccccCCCCCchhHHHHHcCchHHHHHHHhcCCCC-cccccCCCcchhhhcccchHHHHHHHH
Confidence            22                2347999999999999999999999999999996 677899999999999999999999999


Q ss_pred             hhC
Q 047844          183 QKC  185 (264)
Q Consensus       183 ~~g  185 (264)
                      +.+
T Consensus       201 ~~~  203 (235)
T COG0666         201 DKG  203 (235)
T ss_pred             hcC
Confidence            976

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.53  E-value=1e-13  Score=124.19  Aligned_cols=105  Identities=22%  Similarity=0.253  Sum_probs=91.3

Q ss_pred             HHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCC
Q 047844           81 PLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANG  160 (264)
Q Consensus        81 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  160 (264)
                      .|+.|+..|+.++++.|++.|++++.                 +|..|.||||+|+..|+.+++++|++.|+++ +..|.
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~-----------------~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-n~~d~  146 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNC-----------------RDYDGRTPLHIACANGHVQVVRVLLEFGADP-TLLDK  146 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCC-----------------cCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCC
Confidence            58889999999999999999887544                 8889999999999999999999999999985 78899


Q ss_pred             CCCCHHHHHHHhChHHHHHHHHhh-------CCCCCcCCCCCccHHhHHH
Q 047844          161 SGETPLYLAAARAHKEISAEILQK-------CPSPAHEGPNGKTALHAAV  203 (264)
Q Consensus       161 ~g~t~Lh~A~~~~~~~~~~~Ll~~-------ga~~~~~~~~g~tpl~~A~  203 (264)
                      .|.||||+|+..++.+++++|+++       |++.+..+..|.+|+..+.
T Consensus       147 ~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        147 DGKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             CCCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            999999999999999999999988       7888888887777766543

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.51  E-value=9e-14  Score=107.00  Aligned_cols=120  Identities=22%  Similarity=0.140  Sum_probs=108.9

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChH
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAP   81 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~   81 (264)
                      .+||..++..|+.+-+..|+..+...+..|..|.|+|..|+  ..|+        .++++.|++.++++...++..++||
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAa--ykGn--------l~~v~lll~~gaDvN~~qhg~~YTp   82 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAA--YKGN--------LTLVELLLELGADVNDKQHGTLYTP   82 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHH--hcCc--------HHHHHHHHHhCCCcCcccccccccH
Confidence            46899999999999999999944444558999999999999  9999        9999999999999877888999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHh
Q 047844           82 LHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILL  148 (264)
Q Consensus        82 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll  148 (264)
                      ||.|+.+|+.++..+|++.|+....                 .|.-|+|+-..|+.-|+.+++..+-
T Consensus        83 LmFAALSGn~dvcrllldaGa~~~~-----------------vNsvgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen   83 LMFAALSGNQDVCRLLLDAGARMYL-----------------VNSVGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             HHHHHHcCCchHHHHHHhccCcccc-----------------ccchhhhHHHHHHHhcchHHHHHHh
Confidence            9999999999999999999998766                 7889999999999999988887764

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.51  E-value=2.3e-14  Score=86.25  Aligned_cols=55  Identities=33%  Similarity=0.444  Sum_probs=31.9

Q ss_pred             HhcCC-CCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHH
Q 047844          147 LLGAD-PAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAA  202 (264)
Q Consensus       147 Ll~~g-~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A  202 (264)
                      |++.| .+ .+.+|..|.||||+|+..|+.+++++|++.|++++.+|..|+||+|+|
T Consensus         1 LL~~~~~~-~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPAD-VNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T---TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCC-CcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            56777 45 578999999999999999999999999999999999999999999987

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.50  E-value=5.3e-14  Score=116.36  Aligned_cols=118  Identities=21%  Similarity=0.252  Sum_probs=102.6

Q ss_pred             HHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHH
Q 047844            4 DLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLH   83 (264)
Q Consensus         4 ~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~   83 (264)
                      .|..|+..|.+|+|+..+.+.+..+..+.+|-|+||-|+  -.||        ++||++|++.+.+ +|..|.+||||||
T Consensus       553 LLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAi--Cagh--------yeIVkFLi~~gan-VNa~DSdGWTPLH  621 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAI--CAGH--------YEIVKFLIEFGAN-VNAADSDGWTPLH  621 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhh--hcch--------hHHHHHHHhcCCc-ccCccCCCCchhh
Confidence            367899999999999999866666669999999999999  9999        9999999999999 8999999999999


Q ss_pred             HHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHH--hcCCHHHHHHHh
Q 047844           84 VAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAV--QSGSLDVVKILL  148 (264)
Q Consensus        84 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~--~~~~~~~~~~Ll  148 (264)
                      .|+..++..+++.|++.|+.+-..                .-.++.|+..-+-  +.|...|.+||.
T Consensus       622 CAASCNnv~~ckqLVe~GaavfAs----------------TlSDmeTa~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  622 CAASCNNVPMCKQLVESGAAVFAS----------------TLSDMETAAEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             hhhhcCchHHHHHHHhccceEEee----------------ecccccchhhhcchhhhhHHHHHHHHH
Confidence            999999999999999999876542                3345666666553  358889999996

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.49  E-value=9.2e-14  Score=83.13  Aligned_cols=53  Identities=26%  Similarity=0.317  Sum_probs=25.3

Q ss_pred             CCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHH
Q 047844          162 GETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCH  214 (264)
Q Consensus       162 g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l  214 (264)
                      |+||+|+|++.|+.+++++|++.|.+++.+|.+|.||+|+|+..|+.+++++|
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~L   53 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFL   53 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHH
Confidence            34555555555555555555555555555555555555555555555555544

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.47  E-value=6.2e-13  Score=102.44  Aligned_cols=120  Identities=20%  Similarity=0.227  Sum_probs=110.0

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCC
Q 047844           78 GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYS  157 (264)
Q Consensus        78 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~  157 (264)
                      -..||.-++..+..+-...||+-...                 +|..|..|.++|..|+..|+.++++.|++.|+|++..
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~-----------------vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~   74 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQ-----------------VNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDK   74 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhh-----------------hhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcc
Confidence            36789999999999988888876443                 4559999999999999999999999999999999877


Q ss_pred             CCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHH
Q 047844          158 ANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCH  214 (264)
Q Consensus       158 ~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l  214 (264)
                      .+..++||||+|+..|+.++..+|++.|+.....|.-|+|+-++|+.-|+-++|..+
T Consensus        75 qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iI  131 (396)
T KOG1710|consen   75 QHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAII  131 (396)
T ss_pred             cccccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHH
Confidence            888999999999999999999999999999999999999999999999999998765

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.47  E-value=1.9e-13  Score=81.74  Aligned_cols=54  Identities=26%  Similarity=0.389  Sum_probs=45.9

Q ss_pred             CCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHH
Q 047844           34 KNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALI   98 (264)
Q Consensus        34 g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll   98 (264)
                      |.||||.|+  ..|+        .+++++|++.+.+ ++.+|.+|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~--~~g~--------~~~~~~Ll~~~~d-in~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAA--RSGN--------LEIVKLLLEHGAD-INAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHH--HTT---------HHHHHHHHHTTSG-TT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHH--HhCC--------HHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            689999999  9999        9999999999988 8888999999999999999999999986

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.47  E-value=4.6e-13  Score=120.01  Aligned_cols=104  Identities=20%  Similarity=0.210  Sum_probs=91.8

Q ss_pred             hhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhH
Q 047844           37 VLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVEST  116 (264)
Q Consensus        37 ~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~  116 (264)
                      .|+.|+  ..|+        .+.++.|++.+.+ ++..|..|+||||+|+..|+.+++++|++.|++++.          
T Consensus        85 ~L~~aa--~~G~--------~~~vk~LL~~Gad-in~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~----------  143 (664)
T PTZ00322         85 ELCQLA--ASGD--------AVGARILLTGGAD-PNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTL----------  143 (664)
T ss_pred             HHHHHH--HcCC--------HHHHHHHHHCCCC-CCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCC----------
Confidence            488899  9999        9999999999998 789999999999999999999999999999998654          


Q ss_pred             HHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcC-------CCCCCCCCCCCCCCHHHHH
Q 047844          117 ARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGA-------DPAFPYSANGSGETPLYLA  169 (264)
Q Consensus       117 ~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-------g~~~~~~~~~~g~t~Lh~A  169 (264)
                             +|..|.||||+|+..|+.+++++|+++       |++. +..+..|.+|+..+
T Consensus       144 -------~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~-~~~~~~g~~~~~~~  195 (664)
T PTZ00322        144 -------LDKDGKTPLELAEENGFREVVQLLSRHSQCHFELGANA-KPDSFTGKPPSLED  195 (664)
T ss_pred             -------CCCCCCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCC-CccccCCCCccchh
Confidence                   899999999999999999999999988       6664 45566666665443

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.45  E-value=3.3e-13  Score=111.79  Aligned_cols=108  Identities=25%  Similarity=0.224  Sum_probs=58.9

Q ss_pred             HHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHH
Q 047844           57 TKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAV  136 (264)
Q Consensus        57 ~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~  136 (264)
                      +++|+..+..-.+ ....+..|.|+||-|+..||.+||++|++.|++++.                 .|.+|+||||+|+
T Consensus       563 ldlVq~~i~ev~D-pSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa-----------------~DSdGWTPLHCAA  624 (752)
T KOG0515|consen  563 LDLVQRIIYEVTD-PSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNA-----------------ADSDGWTPLHCAA  624 (752)
T ss_pred             HHHHHHHHHhhcC-CCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccC-----------------ccCCCCchhhhhh
Confidence            5555555555544 445555566666666666666666666666555433                 5556666666666


Q ss_pred             hcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHH--HHhChHHHHHHHH
Q 047844          137 QSGSLDVVKILLGADPAFPYSANGSGETPLYLA--AARAHKEISAEIL  182 (264)
Q Consensus       137 ~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A--~~~~~~~~~~~Ll  182 (264)
                      .-++..+|+.|++.|+.+...+=.++.|+..-.  ...|..+|.++|.
T Consensus       625 SCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  625 SCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             hcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHH
Confidence            666666666666655554333444455554332  2334455555554

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.39  E-value=3e-13  Score=81.34  Aligned_cols=56  Identities=36%  Similarity=0.577  Sum_probs=32.7

Q ss_pred             HHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHH
Q 047844           63 IIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEA  135 (264)
Q Consensus        63 ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A  135 (264)
                      |++.++..++..|..|+||||+|+..|+.+++++|++.|++++.                 +|..|+||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~-----------------~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNA-----------------KDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT--------------------TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCC-----------------CcCCCCCHHHhC
Confidence            46667455889999999999999999999999999998888655                 999999999987

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.97  E-value=2.7e-09  Score=88.27  Aligned_cols=87  Identities=20%  Similarity=0.203  Sum_probs=80.2

Q ss_pred             ChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChH
Q 047844          130 TALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCA  209 (264)
Q Consensus       130 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~  209 (264)
                      ..||.+++.|+.+.+--|+..|++........|.||||.|++.|+..-+++|+-+|||+...|.+|+||+.+|-..|+-+
T Consensus       135 rQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~  214 (669)
T KOG0818|consen  135 KQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHE  214 (669)
T ss_pred             HHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchH
Confidence            36899999999999999999999987667778999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHh
Q 047844          210 ASRCHKL  216 (264)
Q Consensus       210 ~~~~l~~  216 (264)
                      +...|.+
T Consensus       215 laeRl~e  221 (669)
T KOG0818|consen  215 LAERLVE  221 (669)
T ss_pred             HHHHHHH
Confidence            8876643

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.94  E-value=5.7e-10  Score=97.53  Aligned_cols=89  Identities=22%  Similarity=0.144  Sum_probs=79.6

Q ss_pred             hcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHh
Q 047844          121 LGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALH  200 (264)
Q Consensus       121 l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~  200 (264)
                      .|++|..|+++||+++..+..++++||+++|+++.-.--..|+||||-|...|+.+++-.|+.+|..+.++|+.|.+||+
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq  124 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQ  124 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHH
Confidence            56799999999999999999999999999999974444447999999999999999999999999999999999999999


Q ss_pred             HHHhcCChH
Q 047844          201 AAVCSRSCA  209 (264)
Q Consensus       201 ~A~~~~~~~  209 (264)
                      ..+.-....
T Consensus       125 ~~~r~~~~~  133 (1267)
T KOG0783|consen  125 FLSRVLSST  133 (1267)
T ss_pred             HHhhccccc
Confidence            987744333

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.90  E-value=8.1e-09  Score=86.98  Aligned_cols=99  Identities=24%  Similarity=0.358  Sum_probs=53.3

Q ss_pred             hCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHH
Q 047844           66 MCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVK  145 (264)
Q Consensus        66 ~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~  145 (264)
                      +|.+ +..++.+..+.||+|+..|+-++|+|+|++|..               .++++.+..|.|+||.|+..++..++.
T Consensus       888 ~gg~-ll~~~~~~~sllh~a~~tg~~eivkyildh~p~---------------elld~~de~get~lhkaa~~~~r~vc~  951 (1004)
T KOG0782|consen  888 NGGS-LLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPS---------------ELLDMADETGETALHKAACQRNRAVCQ  951 (1004)
T ss_pred             cCCc-eEeeCcchhhHHHHHHhcCChHHHHHHHhcCCH---------------HHHHHHhhhhhHHHHHHHHhcchHHHH
Confidence            3344 445555555666666666666666666665543               223445555555555555555555555


Q ss_pred             HHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHH
Q 047844          146 ILLGADPAFPYSANGSGETPLYLAAARAHKEISAEI  181 (264)
Q Consensus       146 ~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~L  181 (264)
                      +|++.|+.+ ..+|..|.||-.-|-+.|..+..-+|
T Consensus       952 ~lvdagasl-~ktd~kg~tp~eraqqa~d~dlaayl  986 (1004)
T KOG0782|consen  952 LLVDAGASL-RKTDSKGKTPQERAQQAGDPDLAAYL  986 (1004)
T ss_pred             HHHhcchhh-eecccCCCChHHHHHhcCCchHHHHH
Confidence            555555553 34555555555555555555555444

>PF13606 Ank_3: Ankyrin repeat

Probab=98.89  E-value=3e-09  Score=54.69  Aligned_cols=28  Identities=36%  Similarity=0.459  Sum_probs=17.6

Q ss_pred             CCCHHHHHHHhChHHHHHHHHhhCCCCC
Q 047844          162 GETPLYLAAARAHKEISAEILQKCPSPA  189 (264)
Q Consensus       162 g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~  189 (264)
                      |+||||+|+..|+.+++++|+++|+|+|
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            5666666666666666666666666554

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.84  E-value=1.9e-09  Score=94.30  Aligned_cols=97  Identities=20%  Similarity=0.275  Sum_probs=85.4

Q ss_pred             HHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCC-CCCCChhhHHH
Q 047844           58 KFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKN-DEEDTALHEAV  136 (264)
Q Consensus        58 ~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~t~L~~A~  136 (264)
                      .+..++...+.+..++.|..|+|+||+|+..+...+++||+++|.++.-                 +| ..|+||||-|+
T Consensus        32 qlk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~v-----------------qD~ESG~taLHRai   94 (1267)
T KOG0783|consen   32 QLKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFV-----------------QDEESGYTALHRAI   94 (1267)
T ss_pred             HHHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeee-----------------ccccccchHhhHhh
Confidence            3455566677887899999999999999999999999999999988543                 55 47999999999


Q ss_pred             hcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHh
Q 047844          137 QSGSLDVVKILLGADPAFPYSANGSGETPLYLAAAR  172 (264)
Q Consensus       137 ~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~  172 (264)
                      .+|+++++..|+++|..+ ..+|..|..||.+.++-
T Consensus        95 yyG~idca~lLL~~g~SL-~i~Dkeglsplq~~~r~  129 (1267)
T KOG0783|consen   95 YYGNIDCASLLLSKGRSL-RIKDKEGLSPLQFLSRV  129 (1267)
T ss_pred             hhchHHHHHHHHhcCCce-EEecccCCCHHHHHhhc
Confidence            999999999999999985 89999999999988773

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.82  E-value=1.1e-08  Score=86.14  Aligned_cols=118  Identities=19%  Similarity=0.260  Sum_probs=102.3

Q ss_pred             HHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCc-cceecCCCCChHHH
Q 047844            5 LYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPS-LLLQVNAKGDAPLH   83 (264)
Q Consensus         5 l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~-~~~~~~~~g~t~L~   83 (264)
                      +..|+..+++-.+.....++.....++.+..+.||+|+  ..|+        -++++|++++++. +++..|..|.|+||
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~--~tg~--------~eivkyildh~p~elld~~de~get~lh  939 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAA--KTGN--------GEIVKYILDHGPSELLDMADETGETALH  939 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHH--hcCC--------hHHHHHHHhcCCHHHHHHHhhhhhHHHH
Confidence            56777888876666666555555668899999999999  9999        9999999999976 46788999999999


Q ss_pred             HHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhc
Q 047844           84 VAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLG  149 (264)
Q Consensus        84 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  149 (264)
                      .|+..++-.+.++|.+.|+....                 .|..|.||-.-|-+.|..++.-||-.
T Consensus       940 kaa~~~~r~vc~~lvdagasl~k-----------------td~kg~tp~eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  940 KAACQRNRAVCQLLVDAGASLRK-----------------TDSKGKTPQERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             HHHHhcchHHHHHHHhcchhhee-----------------cccCCCChHHHHHhcCCchHHHHHhh
Confidence            99999999999999999988544                 78899999999999999999999974

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.81  E-value=7.7e-09  Score=54.73  Aligned_cols=32  Identities=31%  Similarity=0.440  Sum_probs=22.6

Q ss_pred             CCCCHHHHHHHhChHHHHHHHHhhCCCCCcCC
Q 047844          161 SGETPLYLAAARAHKEISAEILQKCPSPAHEG  192 (264)
Q Consensus       161 ~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~  192 (264)
                      +|+||||+|+..++.+++++|+++|++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            36677777777777777777777777776655

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.80  E-value=5.6e-09  Score=53.70  Aligned_cols=29  Identities=34%  Similarity=0.615  Sum_probs=26.7

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHHhhhcc
Q 047844           77 KGDAPLHVAARYGHAAVVEALIEIAKQES  105 (264)
Q Consensus        77 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~  105 (264)
                      +|+||||+|++.|+.+++++|+++|++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            58999999999999999999999998754

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.78  E-value=8.7e-09  Score=84.94  Aligned_cols=94  Identities=17%  Similarity=0.181  Sum_probs=85.9

Q ss_pred             CCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhh-CCCCCcCCCCCccHHhHH
Q 047844          124 KNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQK-CPSPAHEGPNGKTALHAA  202 (264)
Q Consensus       124 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~-ga~~~~~~~~g~tpl~~A  202 (264)
                      +...+..++++|+..|.+..++-+.-.|.++ ..+|.+.+|+||.|+..|+.+++++|++. +.+++.+|..|+|||+-|
T Consensus       502 ~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~-~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA  580 (622)
T KOG0506|consen  502 RENDTVINVMYAAKNGDLSALRRFALQGMDL-ETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDA  580 (622)
T ss_pred             ccccchhhhhhhhhcCCHHHHHHHHHhcccc-cccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHh
Confidence            4455677899999999999999999999996 78999999999999999999999999986 589999999999999999


Q ss_pred             HhcCChHHHHHHHhhh
Q 047844          203 VCSRSCAASRCHKLHR  218 (264)
Q Consensus       203 ~~~~~~~~~~~l~~~~  218 (264)
                      ...++.+++++|..+.
T Consensus       581 ~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  581 KHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             HhcCcHHHHHHHHHHh
Confidence            9999999999997764

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.72  E-value=1.7e-08  Score=83.31  Aligned_cols=95  Identities=27%  Similarity=0.277  Sum_probs=83.0

Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCC
Q 047844           75 NAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAF  154 (264)
Q Consensus        75 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~  154 (264)
                      +.++..++.+|+..|+...++.+.-.|.+                 ++.+|.+.+|+||+|+..|+.+++|+|++.-...
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D-----------------~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~  565 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMD-----------------LETKDYDDRTALHVAAAEGHVEVVKFLLNACKVD  565 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhccc-----------------ccccccccchhheeecccCceeHHHHHHHHHcCC
Confidence            34567889999999999999999888877                 4559999999999999999999999999854333


Q ss_pred             CCCCCCCCCCHHHHHHHhChHHHHHHHHhhCC
Q 047844          155 PYSANGSGETPLYLAAARAHKEISAEILQKCP  186 (264)
Q Consensus       155 ~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga  186 (264)
                      .+.+|.+|+|||.-|...++.+++++|-++..
T Consensus       566 ~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  566 PDPKDRWGRTPLDDAKHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             CChhhccCCCcchHhHhcCcHHHHHHHHHHhc
Confidence            57899999999999999999999999987754

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.62  E-value=1.6e-07  Score=78.82  Aligned_cols=86  Identities=23%  Similarity=0.187  Sum_probs=68.3

Q ss_pred             ChhhHHHhcCCHHHHHHHh-cCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCCh
Q 047844          130 TALHEAVQSGSLDVVKILL-GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSC  208 (264)
Q Consensus       130 t~L~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~  208 (264)
                      .|+|+++.....+-+..++ ..-.......|..|+||||+|++.|+...++.|+..|+++..+|..|++|||-|+..|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            3588888876665555433 222223467888999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHH
Q 047844          209 AASRCHK  215 (264)
Q Consensus       209 ~~~~~l~  215 (264)
                      +++..++
T Consensus       102 q~i~~vl  108 (560)
T KOG0522|consen  102 QIITEVL  108 (560)
T ss_pred             HHHHHHH
Confidence            8775543

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.60  E-value=2.8e-07  Score=77.29  Aligned_cols=109  Identities=15%  Similarity=0.164  Sum_probs=83.6

Q ss_pred             HHHHHHHcCCchHHhhhhh-h-cccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChH
Q 047844            4 DLYEAAAKGEIEPFNQLAI-D-RQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAP   81 (264)
Q Consensus         4 ~l~~A~~~g~~~~~~~l~~-~-~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~   81 (264)
                      |+|.+....+.+.+...+. + ....+..|..|.||||.|+  ..|+        .+.++.|+..+++ +..++.+|++|
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV--~Lg~--------~~~a~~Ll~a~Ad-v~~kN~~gWs~   91 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAV--RLGH--------VEAARILLSAGAD-VSIKNNEGWSP   91 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHH--HhcC--------HHHHHHHHhcCCC-ccccccccccH
Confidence            5999999999988888665 2 1223337889999999999  9999        9999999999999 78999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcC
Q 047844           82 LHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGM  123 (264)
Q Consensus        82 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~  123 (264)
                      ||-|+..|+.+++..++.+...........+....+..+..+
T Consensus        92 L~EAv~~g~~q~i~~vlr~~~~q~~~~~~~~~p~ll~~l~~~  133 (560)
T KOG0522|consen   92 LHEAVSTGNEQIITEVLRHLKYQAWEKWERRLPRLLAKLSEM  133 (560)
T ss_pred             HHHHHHcCCHHHHHHHHHHhHHHHHHHHHhcchHHHHHHHhC
Confidence            999999999999988887654433322333333333333333

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.56  E-value=2e-07  Score=78.88  Aligned_cols=95  Identities=20%  Similarity=0.130  Sum_probs=73.7

Q ss_pred             hhhHHHhcCCHHHHHHHhcCCCCC---CCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCC
Q 047844          131 ALHEAVQSGSLDVVKILLGADPAF---PYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRS  207 (264)
Q Consensus       131 ~L~~A~~~~~~~~~~~Ll~~g~~~---~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~  207 (264)
                      .|..|+....+..+-.|+.+|...   ....+.+|+|+||+||+.|+..+.++|+=+|+|+...|.+|+|+|.||-+.+.
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhccc
Confidence            455666666677777777666431   23446678899999999999999999998899999999999999999999999


Q ss_pred             hHHHHHHHhhhCCCCCCC
Q 047844          208 CAASRCHKLHRSSRFLPS  225 (264)
Q Consensus       208 ~~~~~~l~~~~~~~~~~~  225 (264)
                      -+++..|+.++-+.....
T Consensus       707 qec~d~llq~gcp~e~~~  724 (749)
T KOG0705|consen  707 QECIDVLLQYGCPDECGL  724 (749)
T ss_pred             HHHHHHHHHcCCCccccc
Confidence            999999888887655443

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.56  E-value=1e-07  Score=50.31  Aligned_cols=32  Identities=34%  Similarity=0.511  Sum_probs=28.4

Q ss_pred             CCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCC
Q 047844          127 EEDTALHEAVQSGSLDVVKILLGADPAFPYSAN  159 (264)
Q Consensus       127 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~  159 (264)
                      +|.||||+|+..|+.+++++|+++|+++ +.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADI-NARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCT-TCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCC-CCCC
Confidence            5899999999999999999999999996 4443

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.53  E-value=3.4e-07  Score=76.14  Aligned_cols=93  Identities=22%  Similarity=0.268  Sum_probs=81.2

Q ss_pred             ccCCCCCch------hHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhh
Q 047844           29 LVTHKKNTV------LHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAK  102 (264)
Q Consensus        29 ~~~~~g~t~------L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~  102 (264)
                      .+|.+|.+.      ||.++  +.|+        .+..-.|+..|++....-...|.||||.|+..|+.--+++|.-+|+
T Consensus       122 ~rDdD~~~~~~LsrQLhasv--Rt~n--------let~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGA  191 (669)
T KOG0818|consen  122 CRDDDSVTAKDLSKQLHSSV--RTGN--------LETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGA  191 (669)
T ss_pred             CCCcchhhHHHHHHHHHHHh--hccc--------HHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccC
Confidence            356666654      89999  9999        9999999999999544455679999999999999999999999999


Q ss_pred             hcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHh
Q 047844          103 QESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILL  148 (264)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll  148 (264)
                      ++..                 .|..|.||+.+|-..||-++.+-|+
T Consensus       192 D~~a-----------------~d~~GmtP~~~AR~~gH~~laeRl~  220 (669)
T KOG0818|consen  192 DPGA-----------------QDSSGMTPVDYARQGGHHELAERLV  220 (669)
T ss_pred             CCCC-----------------CCCCCCcHHHHHHhcCchHHHHHHH
Confidence            9766                 9999999999999999988887776

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.42  E-value=6.7e-07  Score=75.78  Aligned_cols=91  Identities=15%  Similarity=0.187  Sum_probs=77.4

Q ss_pred             HHHHHHHcCCchHHhhhhhh----cccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCC
Q 047844            4 DLYEAAAKGEIEPFNQLAID----RQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGD   79 (264)
Q Consensus         4 ~l~~A~~~g~~~~~~~l~~~----~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~   79 (264)
                      .|..|....|+..+-.|+..    .-....-+.+|.|+||.||  ..|+        ..+.+.|+=++.+ +..+|.+|+
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~--~~gn--------Vvl~QLLiWyg~d-v~~rda~g~  695 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAA--RKGN--------VVLAQLLIWYGVD-VMARDAHGR  695 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhh--hhcc--------hhHHHHHHHhCcc-ceecccCCc
Confidence            46778888999999888872    1112224567899999999  9999        9999999999999 789999999


Q ss_pred             hHHHHHHHhCCHHHHHHHHHHhhhcc
Q 047844           80 APLHVAARYGHAAVVEALIEIAKQES  105 (264)
Q Consensus        80 t~L~~A~~~g~~~~v~~Ll~~~~~~~  105 (264)
                      |+|.||-+.|..+|+..|+.+|....
T Consensus       696 t~l~yar~a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  696 TALFYARQAGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             hhhhhHhhcccHHHHHHHHHcCCCcc
Confidence            99999999999999999999997643

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.38  E-value=5.2e-07  Score=81.57  Aligned_cols=93  Identities=26%  Similarity=0.318  Sum_probs=84.5

Q ss_pred             CCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHH
Q 047844          124 KNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAV  203 (264)
Q Consensus       124 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~  203 (264)
                      +-..|.++||.|+..+..-.+++|++.|+++ +..|..|++|+|.+...|+...+..+++.|++.+..+..|.+|+++|.
T Consensus       652 ~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~v-n~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~  730 (785)
T KOG0521|consen  652 VLCIGCSLLHVAVGTGDSGAVELLLQNGADV-NALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAM  730 (785)
T ss_pred             hhhcccchhhhhhccchHHHHHHHHhcCCcc-hhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHh
Confidence            4456899999999999999999999999995 899999999999999999999999999999999999999999999998


Q ss_pred             hcCChHHHHHHHhh
Q 047844          204 CSRSCAASRCHKLH  217 (264)
Q Consensus       204 ~~~~~~~~~~l~~~  217 (264)
                      ...+.+++-++...
T Consensus       731 ~~~~~d~~~l~~l~  744 (785)
T KOG0521|consen  731 EAANADIVLLLRLA  744 (785)
T ss_pred             hhccccHHHHHhhh
Confidence            77887777666554

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.36  E-value=8.9e-07  Score=80.02  Aligned_cols=128  Identities=21%  Similarity=0.201  Sum_probs=100.9

Q ss_pred             ceecCCCCChHHHHHHHhCCHHHHHHHHHH-hhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhc
Q 047844           71 LLQVNAKGDAPLHVAARYGHAAVVEALIEI-AKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLG  149 (264)
Q Consensus        71 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  149 (264)
                      .......|.+-+|+++..+....++.+++- +.....                 .+.+|.-.+|. |..++.+.+-+|+.
T Consensus       567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~e-----------------ld~d~qgV~hf-ca~lg~ewA~ll~~  628 (975)
T KOG0520|consen  567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLE-----------------LDRDGQGVIHF-CAALGYEWAFLPIS  628 (975)
T ss_pred             cccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchh-----------------hcccCCChhhH-hhhcCCceeEEEEe
Confidence            344567899999999999999999988875 333222                 56667777888 55677777777775


Q ss_pred             -CCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCc------CCCCCccHHhHHHhcCChHHHHHHHhh
Q 047844          150 -ADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAH------EGPNGKTALHAAVCSRSCAASRCHKLH  217 (264)
Q Consensus       150 -~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~------~~~~g~tpl~~A~~~~~~~~~~~l~~~  217 (264)
                       .|.. .+.+|..||||||+|+..|+..++..|...|++...      .+..|.|+..+|..+|+..+.-+|.+.
T Consensus       629 ~~~~a-i~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  629 ADGVA-IDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             ecccc-cccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence             4544 478999999999999999999999999988865433      445689999999999999998887654

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.31  E-value=3.2e-06  Score=75.04  Aligned_cols=124  Identities=21%  Similarity=0.179  Sum_probs=95.7

Q ss_pred             CCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCc---cceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhh
Q 047844           33 KKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPS---LLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEI  109 (264)
Q Consensus        33 ~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~---~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~  109 (264)
                      .+.-....|+  ..|+        ...|+..++....   .+|-.|.-|+++|+.|+.+.+.++.++|++.....     
T Consensus        24 ~~e~~fL~a~--E~gd--------~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-----   88 (822)
T KOG3609|consen   24 EGEKGFLLAH--ENGD--------VPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-----   88 (822)
T ss_pred             hhhHHHHHHH--HcCC--------hHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-----
Confidence            3445677889  9999        9999998886544   35667888999999999999999999999874332     


Q ss_pred             hhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCC---------CCCCCCCCCCHHHHHHHhChHHHHHH
Q 047844          110 ESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAF---------PYSANGSGETPLYLAAARAHKEISAE  180 (264)
Q Consensus       110 ~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~---------~~~~~~~g~t~Lh~A~~~~~~~~~~~  180 (264)
                                         .-+|..|+..|..++++.++..-...         ....=.-+.||+.+||..++++|+++
T Consensus        89 -------------------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~  149 (822)
T KOG3609|consen   89 -------------------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQC  149 (822)
T ss_pred             -------------------chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHH
Confidence                               23889999999999999998643221         11112246899999999999999999


Q ss_pred             HHhhCCCCCc
Q 047844          181 ILQKCPSPAH  190 (264)
Q Consensus       181 Ll~~ga~~~~  190 (264)
                      |++.|+.+..
T Consensus       150 Ll~kg~~i~~  159 (822)
T KOG3609|consen  150 LLTRGHCIPI  159 (822)
T ss_pred             HHHcCCCCCC
Confidence            9999877654

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.27  E-value=8.6e-06  Score=72.41  Aligned_cols=134  Identities=18%  Similarity=0.199  Sum_probs=106.5

Q ss_pred             CCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCC
Q 047844           76 AKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFP  155 (264)
Q Consensus        76 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~  155 (264)
                      ..+..-+-.|+..|+...|+..++.... ..            ..+|..|.-|+++|+.|+.+.+.++.++|++.+... 
T Consensus        23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~-~~------------lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-   88 (822)
T KOG3609|consen   23 NEGEKGFLLAHENGDVPLVAKALEYKAV-SK------------LNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-   88 (822)
T ss_pred             chhhHHHHHHHHcCChHHHHHHHHhccc-cc------------cchhccChHhhhceecccccccHHHHHHHhcCcccc-
Confidence            3445667889999999999999887554 11            235778999999999999999999999999887653 


Q ss_pred             CCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCC----------CcCCCCCccHHhHHHhcCChHHHHHHHhhhCCCCCCC
Q 047844          156 YSANGSGETPLYLAAARAHKEISAEILQKCPSP----------AHEGPNGKTALHAAVCSRSCAASRCHKLHRSSRFLPS  225 (264)
Q Consensus       156 ~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~----------~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~~~~~  225 (264)
                             ..+|..|+..|..++++.++.+....          ...-..+.||+.+|+..++.||+++|+.++..-..+-
T Consensus        89 -------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH  161 (822)
T KOG3609|consen   89 -------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPH  161 (822)
T ss_pred             -------chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCc
Confidence                   34889999999999999999874332          1123357899999999999999999999998765555


Q ss_pred             Ccccc
Q 047844          226 PRSCL  230 (264)
Q Consensus       226 ~~~~~  230 (264)
                      ...|.
T Consensus       162 ~~~C~  166 (822)
T KOG3609|consen  162 DIRCE  166 (822)
T ss_pred             ccccC
Confidence            55553

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.09  E-value=1.8e-05  Score=58.13  Aligned_cols=73  Identities=22%  Similarity=0.180  Sum_probs=49.7

Q ss_pred             HhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCC
Q 047844          120 MLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEG  192 (264)
Q Consensus       120 ~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~  192 (264)
                      .||..|..|+|+++.|++.|..+.+.||+.+|+...-..|..+.+++.+|-+.|...++..|.++-.+-...+
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~   76 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPM   76 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCcc
Confidence            3566777777777777777777777777777733335667777777777777777777777776644443333

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.05  E-value=1.3e-05  Score=58.78  Aligned_cols=65  Identities=15%  Similarity=-0.005  Sum_probs=60.8

Q ss_pred             CCCCCCCCCCHHHHHHHhChHHHHHHHHhhC-CCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhC
Q 047844          155 PYSANGSGETPLYLAAARAHKEISAEILQKC-PSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRS  219 (264)
Q Consensus       155 ~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~  219 (264)
                      .+.+|..|||++++|++.|+.+.+.+|+..| +.+-..|..+.+++.+|-+.|..++++.|.++..
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~   70 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDR   70 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhc
Confidence            3789999999999999999999999999999 8999999999999999999999999999877644

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.03  E-value=5.8e-05  Score=61.30  Aligned_cols=84  Identities=17%  Similarity=0.153  Sum_probs=61.3

Q ss_pred             HHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHH
Q 047844            4 DLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLH   83 (264)
Q Consensus         4 ~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~   83 (264)
                      -|.+||+.|+++.|++|++.+-..+..|....+||..|+  ..||        ...+++|+++|+-. +....+|..+ |
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAs--LcGH--------e~vvklLLenGAiC-~rdtf~G~RC-~  106 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLAS--LCGH--------EDVVKLLLENGAIC-SRDTFDGDRC-H  106 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHH--HcCc--------HHHHHHHHHcCCcc-cccccCcchh-h
Confidence            478899999999999999933333448899999999999  9999        99999999999773 3344566666 5


Q ss_pred             HHHHhCCHHHHHHHHHHh
Q 047844           84 VAARYGHAAVVEALIEIA  101 (264)
Q Consensus        84 ~A~~~g~~~~v~~Ll~~~  101 (264)
                      +++.  +..|-+.|+++.
T Consensus       107 YgaL--nd~IR~mllsyd  122 (516)
T KOG0511|consen  107 YGAL--NDRIRRMLLSYD  122 (516)
T ss_pred             hhhh--hHHHHHHHHHHH
Confidence            5544  334445565553

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.02  E-value=6.6e-06  Score=74.60  Aligned_cols=88  Identities=26%  Similarity=0.337  Sum_probs=77.7

Q ss_pred             CCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCC
Q 047844           76 AKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFP  155 (264)
Q Consensus        76 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~  155 (264)
                      ..|.|+||.|+..|....+++|+++|++++.                 .+..|.+|+|.+...|+...+..|+++|++. 
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~-----------------~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~-  715 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNA-----------------LDSKGRTPLHHATASGHTSIACLLLKRGADP-  715 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchh-----------------hhccCCCcchhhhhhcccchhhhhccccccc-
Confidence            4578999999999999999999999999544                 8999999999999999999999999999994 


Q ss_pred             CCCCCCCCCHHHHHHHhChHHHHHHH
Q 047844          156 YSANGSGETPLYLAAARAHKEISAEI  181 (264)
Q Consensus       156 ~~~~~~g~t~Lh~A~~~~~~~~~~~L  181 (264)
                      +..+..|.+|+++|....+.+++-++
T Consensus       716 ~a~~~~~~~~l~~a~~~~~~d~~~l~  741 (785)
T KOG0521|consen  716 NAFDPDGKLPLDIAMEAANADIVLLL  741 (785)
T ss_pred             cccCccCcchhhHHhhhccccHHHHH
Confidence            78999999999999776655555433

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.01  E-value=3.2e-05  Score=62.77  Aligned_cols=76  Identities=24%  Similarity=0.187  Sum_probs=62.0

Q ss_pred             ChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCC
Q 047844           79 DAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSA  158 (264)
Q Consensus        79 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~  158 (264)
                      .--|..||+.|..+.+++|++.|.+++.                 .|....+||.+|+--||.+++|+|+++|+.+ ...
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~-----------------vD~fD~spL~lAsLcGHe~vvklLLenGAiC-~rd   98 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNA-----------------VDRFDSSPLYLASLCGHEDVVKLLLENGAIC-SRD   98 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcch-----------------hhcccccHHHHHHHcCcHHHHHHHHHcCCcc-ccc
Confidence            4468899999999999999999988655                 8999999999999999999999999999985 333


Q ss_pred             CCCCCCHHHHHHHhC
Q 047844          159 NGSGETPLYLAAARA  173 (264)
Q Consensus       159 ~~~g~t~Lh~A~~~~  173 (264)
                      ..+|.-+ |+++.+.
T Consensus        99 tf~G~RC-~YgaLnd  112 (516)
T KOG0511|consen   99 TFDGDRC-HYGALND  112 (516)
T ss_pred             ccCcchh-hhhhhhH
Confidence            3345544 5565543

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.84  E-value=3.2e-05  Score=70.32  Aligned_cols=126  Identities=21%  Similarity=0.210  Sum_probs=94.4

Q ss_pred             cCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHh-CCccceecCCCCChHHHHHHHhCCHHHHHHHH-HHhhhcchh
Q 047844           30 VTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEM-CPSLLLQVNAKGDAPLHVAARYGHAAVVEALI-EIAKQESDQ  107 (264)
Q Consensus        30 ~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~-~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~~~~~~~~  107 (264)
                      ..-.|++.+|.++  ..+.        .-+++.+++- +.. ....|.+|+-.+|+++ .++.+..-+++ -.|..    
T Consensus       570 ~~~r~~lllhL~a--~~ly--------awLie~~~e~~~~~-~~eld~d~qgV~hfca-~lg~ewA~ll~~~~~~a----  633 (975)
T KOG0520|consen  570 VNFRDMLLLHLLA--ELLY--------AWLIEKVIEWAGSG-DLELDRDGQGVIHFCA-ALGYEWAFLPISADGVA----  633 (975)
T ss_pred             CCCcchHHHHHHH--HHhH--------HHHHHHHhcccccC-chhhcccCCChhhHhh-hcCCceeEEEEeecccc----
Confidence            5667999999999  9999        8999999985 333 4456777777888844 44555444333 23333    


Q ss_pred             hhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCC-----CCCCCCHHHHHHHhChHHHHHHHH
Q 047844          108 EIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSA-----NGSGETPLYLAAARAHKEISAEIL  182 (264)
Q Consensus       108 ~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~-----~~~g~t~Lh~A~~~~~~~~~~~Ll  182 (264)
                                   ++.+|..|+||||||+..|+..++..|++.|++....+     ...|.|+-.+|-.+|+..+..+|.
T Consensus       634 -------------i~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~ls  700 (975)
T KOG0520|consen  634 -------------IDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLS  700 (975)
T ss_pred             -------------cccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHh
Confidence                         56699999999999999999999999997766533222     335888999999999988888877


Q ss_pred             hh
Q 047844          183 QK  184 (264)
Q Consensus       183 ~~  184 (264)
                      +.
T Consensus       701 e~  702 (975)
T KOG0520|consen  701 EK  702 (975)
T ss_pred             hh
Confidence            65

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.19  E-value=0.00086  Score=56.57  Aligned_cols=65  Identities=17%  Similarity=0.089  Sum_probs=54.8

Q ss_pred             CCHHHHHHHhcCCCCCC-----CCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHH
Q 047844          139 GSLDVVKILLGADPAFP-----YSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAV  203 (264)
Q Consensus       139 ~~~~~~~~Ll~~g~~~~-----~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~  203 (264)
                      .-...+++|.+++....     ...+..-.|+||+|+..|..+++.+||+.|+|+..+|..|+||..++.
T Consensus       402 ~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  402 PEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             CchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            34778888988877642     123445689999999999999999999999999999999999999987

>smart00248 ANK ankyrin repeats

Probab=97.11  E-value=0.0011  Score=32.63  Aligned_cols=25  Identities=40%  Similarity=0.525  Sum_probs=12.2

Q ss_pred             CCCHHHHHHHhChHHHHHHHHhhCC
Q 047844          162 GETPLYLAAARAHKEISAEILQKCP  186 (264)
Q Consensus       162 g~t~Lh~A~~~~~~~~~~~Ll~~ga  186 (264)
                      |.||+|+|+..++.++++.|++.+.
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            3445555555555555555544443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.92  E-value=0.0014  Score=32.21  Aligned_cols=27  Identities=37%  Similarity=0.647  Sum_probs=24.2

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHHhhh
Q 047844           77 KGDAPLHVAARYGHAAVVEALIEIAKQ  103 (264)
Q Consensus        77 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~  103 (264)
                      .|.||+|+|+..++.++++.|++.+.+
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            468999999999999999999998764

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.72  E-value=0.018  Score=42.57  Aligned_cols=143  Identities=13%  Similarity=0.049  Sum_probs=75.1

Q ss_pred             HHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHH
Q 047844            4 DLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLH   83 (264)
Q Consensus         4 ~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~   83 (264)
                      -|..|+..+-+++++.+-+....   .-....+.+..||  +..+        .++++|+-++-.-      .+-.+.+.
T Consensus        49 Ll~HAVk~nmL~ILqkyke~L~~---~~~~~q~LFElAC--~~qk--------ydiV~WI~qnL~i------~~~~~iFd  109 (192)
T PF03158_consen   49 LLYHAVKYNMLSILQKYKEDLEN---ERYLNQELFELAC--EEQK--------YDIVKWIGQNLHI------YNPEDIFD  109 (192)
T ss_pred             HHHHHHHcCcHHHHHHHHHHhhc---chhHHHHHHHHHH--HHcc--------ccHHHHHhhccCC------CCchhhhh
Confidence            35556667777776666652221   1124456677777  7777        7777777332211      22245666


Q ss_pred             HHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCC
Q 047844           84 VAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGE  163 (264)
Q Consensus        84 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~  163 (264)
                      .|....+.+.  +.+.+.-..+.....  .......++       ..-|..|+..|-.+.+...++.|.++.       .
T Consensus       110 IA~~~kDlsL--yslGY~l~~~~~~~~--~~~d~~~ll-------~~hl~~a~~kgll~F~letlkygg~~~-------~  171 (192)
T PF03158_consen  110 IAFAKKDLSL--YSLGYKLLFNRMMSE--HNEDPTSLL-------TQHLEKAAAKGLLPFVLETLKYGGNVD-------I  171 (192)
T ss_pred             hhhhccchhH--HHHHHHHHHhhcccc--cccCHHHHH-------HHHHHHHHHCCCHHHHHHHHHcCCccc-------H
Confidence            6766666554  111111100000000  000000000       123567777788888777777777642       2


Q ss_pred             CHHHHHHHhChHHHHHHHHh
Q 047844          164 TPLYLAAARAHKEISAEILQ  183 (264)
Q Consensus       164 t~Lh~A~~~~~~~~~~~Ll~  183 (264)
                      +.|..|+..++-.++.+++.
T Consensus       172 ~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  172 IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHHhhHHHHHHHhhc
Confidence            67777877777777777653

These proteins may be involved in promoting survival of infected macrophages [].

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.33  E-value=0.0076  Score=51.12  Aligned_cols=65  Identities=20%  Similarity=0.088  Sum_probs=52.1

Q ss_pred             HHHHHHHHHhCCccc-----eecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCCh
Q 047844           57 TKFVERIIEMCPSLL-----LQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTA  131 (264)
Q Consensus        57 ~~~~~~ll~~~~~~~-----~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~  131 (264)
                      ...+++|.+++....     ...+.--.|+||+|+..|..+++.+||+.|+++..                 +|..|.||
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~-----------------kd~~Grtp  466 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPST-----------------KDGAGRTP  466 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchh-----------------cccCCCCc
Confidence            567888888776531     12233457999999999999999999999998876                 89999999


Q ss_pred             hhHHHhc
Q 047844          132 LHEAVQS  138 (264)
Q Consensus       132 L~~A~~~  138 (264)
                      ..++...
T Consensus       467 y~ls~nk  473 (591)
T KOG2505|consen  467 YSLSANK  473 (591)
T ss_pred             ccccccH
Confidence            9998743

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.68  E-value=0.1  Score=40.06  Aligned_cols=90  Identities=11%  Similarity=0.025  Sum_probs=64.5

Q ss_pred             CChhhHHHhcCCHHHHHHHhcCC----CCCCCCCCCCCCCHHHH--HHHhChHHHHHHHHhhC-CCCCc---CCCCCccH
Q 047844          129 DTALHEAVQSGSLDVVKILLGAD----PAFPYSANGSGETPLYL--AAARAHKEISAEILQKC-PSPAH---EGPNGKTA  198 (264)
Q Consensus       129 ~t~L~~A~~~~~~~~~~~Ll~~g----~~~~~~~~~~g~t~Lh~--A~~~~~~~~~~~Ll~~g-a~~~~---~~~~g~tp  198 (264)
                      .+++.+|+..+..+++-+|+.+-    .++....-  +.--+-+  .....+..++++++..| +++|.   +-..|.|-
T Consensus       180 ~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~~--~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtM  257 (284)
T PF06128_consen  180 HQAMWLSIGNAKEDVALYLLSKFNFTKQDVASMEK--ELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTM  257 (284)
T ss_pred             HHHHHHHhcccHHHHHHHHHhhcceecchhhhcCc--chhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchH
Confidence            46788888888999999998642    22211111  1112323  33445778999999998 55554   56789999


Q ss_pred             HhHHHhcCChHHHHHHHhhhCC
Q 047844          199 LHAAVCSRSCAASRCHKLHRSS  220 (264)
Q Consensus       199 l~~A~~~~~~~~~~~l~~~~~~  220 (264)
                      |+-|+++++.+++.+|+.+|+.
T Consensus       258 LDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  258 LDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             HHhHHhcCcHHHHHHHHHcCcc
Confidence            9999999999999999999863

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=95.55  E-value=0.14  Score=37.98  Aligned_cols=136  Identities=13%  Similarity=0.022  Sum_probs=88.9

Q ss_pred             hhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhH
Q 047844           37 VLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVEST  116 (264)
Q Consensus        37 ~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~  116 (264)
                      .+-.|+  ..+.        .+++++.-+...+.    -..+++-+-.||+..+.++|+|+-+.-.-             
T Consensus        49 Ll~HAV--k~nm--------L~ILqkyke~L~~~----~~~~q~LFElAC~~qkydiV~WI~qnL~i-------------  101 (192)
T PF03158_consen   49 LLYHAV--KYNM--------LSILQKYKEDLENE----RYLNQELFELACEEQKYDIVKWIGQNLHI-------------  101 (192)
T ss_pred             HHHHHH--HcCc--------HHHHHHHHHHhhcc----hhHHHHHHHHHHHHccccHHHHHhhccCC-------------
Confidence            355677  7777        88888876655432    23457889999999999999999544221             


Q ss_pred             HHHHhcCCCCCCCChhhHHHhcCCHHHH----HHHhcCCCCCCCCCCC--CCCCHHHHHHHhChHHHHHHHHhhCCCCCc
Q 047844          117 ARHMLGMKNDEEDTALHEAVQSGSLDVV----KILLGADPAFPYSANG--SGETPLYLAAARAHKEISAEILQKCPSPAH  190 (264)
Q Consensus       117 ~~~~l~~~~~~g~t~L~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~--~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~  190 (264)
                               .+-.+-+..|...+..++.    +++..+.... ...|.  --..-|..|+..|-...+...+++|.+++.
T Consensus       102 ---------~~~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~-~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~  171 (192)
T PF03158_consen  102 ---------YNPEDIFDIAFAKKDLSLYSLGYKLLFNRMMSE-HNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI  171 (192)
T ss_pred             ---------CCchhhhhhhhhccchhHHHHHHHHHHhhcccc-cccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH
Confidence                     1122345567666666542    1222222111 01111  011235679999999999999999988864


Q ss_pred             CCCCCccHHhHHHhcCChHHHHHHH
Q 047844          191 EGPNGKTALHAAVCSRSCAASRCHK  215 (264)
Q Consensus       191 ~~~~g~tpl~~A~~~~~~~~~~~l~  215 (264)
                            +.|-.|+.+++..++.++.
T Consensus       172 ------~vls~Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  172 ------IVLSQAVKYNHRKILDYFI  190 (192)
T ss_pred             ------HHHHHHHHhhHHHHHHHhh
Confidence                  7899999999999988764

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.25  E-value=0.15  Score=39.18  Aligned_cols=119  Identities=13%  Similarity=0.082  Sum_probs=80.5

Q ss_pred             hhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhH
Q 047844           37 VLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVEST  116 (264)
Q Consensus        37 ~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~  116 (264)
                      .|--|+  ...+        .+.+.-++....+.        .++|-+|+..+..+++-+|+++..-...          
T Consensus       156 sledAV--~AsN--------~~~i~~~VtdKkdA--------~~Am~~si~~~K~dva~~lls~f~ft~~----------  207 (284)
T PF06128_consen  156 SLEDAV--KASN--------YEEISNLVTDKKDA--------HQAMWLSIGNAKEDVALYLLSKFNFTKQ----------  207 (284)
T ss_pred             cHHHHH--hhcC--------HHHHHHHhcchHHH--------HHHHHHHhcccHHHHHHHHHhhcceecc----------
Confidence            356677  6667        66666666655443        5788999988899999999986421100          


Q ss_pred             HHHHhcCCCCCCCChhhHHHhc--CCHHHHHHHhcCCCCCCC---CCCCCCCCHHHHHHHhChHHHHHHHHhhCCC
Q 047844          117 ARHMLGMKNDEEDTALHEAVQS--GSLDVVKILLGADPAFPY---SANGSGETPLYLAAARAHKEISAEILQKCPS  187 (264)
Q Consensus       117 ~~~~l~~~~~~g~t~L~~A~~~--~~~~~~~~Ll~~g~~~~~---~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~  187 (264)
                        ....+.  .+.--+.++...  -...++++++++|.--.+   .+-..|.|-|.-|...++.+++.+|+++||-
T Consensus       208 --dv~~~~--~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  208 --DVASME--KELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             --hhhhcC--cchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence              001111  122234444443  467789999998864222   3455799999999999999999999999984

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=94.47  E-value=0.092  Score=33.30  Aligned_cols=48  Identities=17%  Similarity=0.257  Sum_probs=40.2

Q ss_pred             ChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcC
Q 047844           79 DAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGA  150 (264)
Q Consensus        79 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  150 (264)
                      ...+..|+..|+.+|++..++.+...                        ...+..|+...+.+++++|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~~~------------------------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNKPD------------------------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhccH------------------------HHHHHHHHHHhhHHHHHHHHHh
Confidence            46789999999999999999765321                        2379999999999999999976

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=94.03  E-value=0.15  Score=32.30  Aligned_cols=48  Identities=15%  Similarity=0.099  Sum_probs=41.2

Q ss_pred             CchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHH
Q 047844           35 NTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEI  100 (264)
Q Consensus        35 ~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  100 (264)
                      ...+..|+  .+|+        .++++.+++.+...        ..++..|+...+-+++++|++.
T Consensus         7 ~~tl~~Ai--~GGN--------~eII~~c~~~~~~~--------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAI--IGGN--------FEIINICLKKNKPD--------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHH--hCCC--------HHHHHHHHHHhccH--------HHHHHHHHHHhhHHHHHHHHHh
Confidence            35688999  9999        99999999766331        5789999999999999999987

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	264
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-09
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-09
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		6e-09
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		1e-08
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-08
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		1e-07
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		1e-07
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-07
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		2e-07
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-07
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-07
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		5e-07
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-04
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		5e-07
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		6e-07
2xee_A	157	Structural Determinants For Improved Thermal Stabil		7e-07
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		8e-07
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		1e-06
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		2e-06
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-06
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		5e-06
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		6e-06
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		9e-06
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		9e-06
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-05
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-05
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		2e-05
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		3e-05
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		3e-05
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		1e-04
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		3e-04
1uoh_A	226	Human Gankyrin Length = 226		3e-04
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		3e-04
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		4e-04
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		6e-04
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		6e-04
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		6e-04

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 68/132 (51%), Gaps = 25/132 (18%)
Query: 73  QVNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEED 129
            VNA+   G  PLH+AA +GH  +VE L           +++G +  A+  LG+      
Sbjct: 39  DVNARDFTGWTPLHLAAHFGHLEIVEVL-----------LKNGADVNAKDSLGV------ 81
Query: 130 TALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPS 187
           T LH A + G L++V++LL  GAD     +++  G TPL+LAA R H EI   +L+    
Sbjct: 82  TPLHLAARRGHLEIVEVLLKNGAD---VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGAD 138
Query: 188 PAHEGPNGKTAL 199
              +   GKTA 
Sbjct: 139 VNAQDKFGKTAF 150

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 63/127 (49%), Gaps = 22/127 (17%)
Query: 75  NAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHE 134
           ++ G  PLH+AA  GH  VV+ L+             G +  A+   G       T LH 
Sbjct: 34  DSDGKTPLHLAAENGHKEVVKLLLS-----------QGADPNAKDSDGK------TPLHL 76
Query: 135 AVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEG 192
           A ++G  +VVK+LL  GADP    + +  G+TPL+LAA   HKE+   +L +   P    
Sbjct: 77  AAENGHKEVVKLLLSQGADP---NAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSD 133
Query: 193 PNGKTAL 199
            +G+T L
Sbjct: 134 SDGRTPL 140

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 64/125 (51%), Gaps = 22/125 (17%)
Query: 78  GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQ 137
           G  PLH+AAR GH  VV+ L+E           +G +  A      K+    T LH A +
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLE-----------AGADVNA------KDKNGRTPLHLAAR 44
Query: 138 SGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNG 195
           +G L+VVK+LL  GAD     + + +G TPL+LAA   H E+   +L+       +  NG
Sbjct: 45  NGHLEVVKLLLEAGADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 101
Query: 196 KTALH 200
           +T LH
Sbjct: 102 RTPLH 106

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 73/173 (42%), Gaps = 23/173 (13%)
Query: 78  GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQ 137
           G +PLHVAA +G A ++  L++            G  + AR      N ++   LH A Q
Sbjct: 86  GSSPLHVAALHGRADLIPLLLK-----------HGANAGAR------NADQAVPLHLACQ 128
Query: 138 SGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKT 197
            G   VVK LL ++ A P   + SG TPL  A +  H E+ A +LQ   S       G T
Sbjct: 129 QGHFQVVKCLLDSN-AKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNT 187
Query: 198 ALHXXXXXXXXXXXXXHKLHRSSRFLPSPR-----SCLIPNSTTTSLFALIPS 245
           ALH               LH +S  + + R      C   NS    L  ++PS
Sbjct: 188 ALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPS 240

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 60/127 (47%), Gaps = 22/127 (17%)
Query: 75  NAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHE 134
           ++ G  PLH AA  GH  +V+ L+             G +  A+   G       T LH 
Sbjct: 34  DSDGRTPLHYAAENGHKEIVKLLLS-----------KGADPNAKDSDGR------TPLHY 76
Query: 135 AVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEG 192
           A ++G  ++VK+LL  GADP    + +  G TPL+ AA   HKEI   +L K   P    
Sbjct: 77  AAENGHKEIVKLLLSKGADP---NAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSD 133
Query: 193 PNGKTAL 199
            +G+T L
Sbjct: 134 SDGRTPL 140

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 60/124 (48%), Gaps = 18/124 (14%)
Query: 77  KGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAV 136
           KG  PLHVAA+YG   V E L+E      +   ++G+                T LH AV
Sbjct: 145 KGFTPLHVAAKYGKVRVAELLLE-RDAHPNAAGKNGL----------------TPLHVAV 187
Query: 137 QSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGK 196
              +LD+VK+LL      P+S   +G TPL++AA +   E++  +LQ   S   E   G 
Sbjct: 188 HHNNLDIVKLLL-PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGV 246
Query: 197 TALH 200
           T LH
Sbjct: 247 TPLH 250

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 61/124 (49%), Gaps = 22/124 (17%)
Query: 78  GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQ 137
           G  PLH+AA +GH  +VE L           +++G +  A   LG       T LH A  
Sbjct: 47  GWTPLHLAAYWGHLEIVEVL-----------LKNGADVNAYDTLG------STPLHLAAH 89
Query: 138 SGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNG 195
            G L++V++LL  GAD     + + +G TPL+LAA R H EI   +L+       +   G
Sbjct: 90  FGHLEIVEVLLKNGAD---VNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFG 146
Query: 196 KTAL 199
           KTA 
Sbjct: 147 KTAF 150

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 64/132 (48%), Gaps = 25/132 (18%)
Query: 73  QVNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEED 129
            VNA+   GD PLH+AAR GH  +VE L           +++G +  A    G       
Sbjct: 39  DVNAEDTYGDTPLHLAARVGHLEIVEVL-----------LKNGADVNALDFSGS------ 81
Query: 130 TALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPS 187
           T LH A + G L++V++LL  GAD     + +  G TPL+LAA   H EI   +L+    
Sbjct: 82  TPLHLAAKRGHLEIVEVLLKYGAD---VNADDTIGSTPLHLAADTGHLEIVEVLLKYGAD 138
Query: 188 PAHEGPNGKTAL 199
              +   GKTA 
Sbjct: 139 VNAQDKFGKTAF 150

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 63/130 (48%), Gaps = 21/130 (16%)
Query: 73  QVNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEED 129
            VNAK   G  PLH+AAR GH  +VE L           +++G +  A+   G       
Sbjct: 39  DVNAKDKDGYTPLHLAAREGHLEIVEVL-----------LKAGADVNAKDKDGY------ 81
Query: 130 TALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPA 189
           T LH A + G L++V++LL A  A   + +  G TPL+LAA   H EI   +L+      
Sbjct: 82  TPLHLAAREGHLEIVEVLLKA-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 140
Query: 190 HEGPNGKTAL 199
            +   GKTA 
Sbjct: 141 AQDKFGKTAF 150

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 63/132 (47%), Gaps = 25/132 (18%)
Query: 73  QVNA---KGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEED 129
            VNA   +G  PLH+AA  GH  +VE L           ++ G +  AR   G       
Sbjct: 39  DVNAHDDQGSTPLHLAAWIGHPEIVEVL-----------LKHGADVNARDTDGW------ 81
Query: 130 TALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPS 187
           T LH A  +G L++V++LL  GAD     + +  G TPL+LAA R H EI   +L+    
Sbjct: 82  TPLHLAADNGHLEIVEVLLKYGAD---VNAQDAYGLTPLHLAADRGHLEIVEVLLKHGAD 138
Query: 188 PAHEGPNGKTAL 199
              +   GKTA 
Sbjct: 139 VNAQDKFGKTAF 150

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 62/127 (48%), Gaps = 22/127 (17%)
Query: 75  NAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHE 134
           +A G  PLH+AA YGH  +VE L           ++ G +  A  ++G       T LH 
Sbjct: 44  DASGLTPLHLAATYGHLEIVEVL-----------LKHGADVNAIDIMG------STPLHL 86
Query: 135 AVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEG 192
           A   G L++V++LL  GAD     + +  G+TPL+LAA   H EI   +L+       + 
Sbjct: 87  AALIGHLEIVEVLLKHGAD---VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQD 143
Query: 193 PNGKTAL 199
             GKTA 
Sbjct: 144 KFGKTAF 150

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 57/108 (52%), Gaps = 22/108 (20%)
Query: 78  GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQ 137
           G  PLH+AAR GH  VV+ L           +E+G +  A      K+    T LH A +
Sbjct: 2   GRTPLHLAARNGHLEVVKLL-----------LEAGADVNA------KDKNGRTPLHLAAR 44
Query: 138 SGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQ 183
           +G L+VVK+LL  GAD     + + +G TPL+LAA   H E+   +L+
Sbjct: 45  NGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVVKLLLE 89

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 130 TALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPS 187
           T LH A ++G L+VVK+LL  GAD     + + +G TPL+LAA   H E+   +L+    
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 188 PAHEGPNGKTALH 200
              +  NG+T LH
Sbjct: 61  VNAKDKNGRTPLH 73

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 62/125 (49%), Gaps = 24/125 (19%)
Query: 78  GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQ 137
           G  PLH+AA +GH  +VE L           +++G +  A   LG+      T LH A  
Sbjct: 47  GWTPLHLAAYFGHLEIVEVL-----------LKNGADVNADDSLGV------TPLHLAAD 89
Query: 138 SGSLDVVKILL--GADPAFPYSANG-SGETPLYLAAARAHKEISAEILQKCPSPAHEGPN 194
            G L+VV++LL  GAD     +AN  +G TPL+LAA   H EI   +L+       +   
Sbjct: 90  RGHLEVVEVLLKNGAD----VNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKF 145
Query: 195 GKTAL 199
           GKTA 
Sbjct: 146 GKTAF 150

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 61/127 (48%), Gaps = 22/127 (17%)
Query: 75  NAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHE 134
           +A G  PLH+AA YGH  +VE L           ++ G +  A  + G       T LH 
Sbjct: 44  DASGLTPLHLAATYGHLEIVEVL-----------LKHGADVNAIDIXG------STPLHL 86
Query: 135 AVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEG 192
           A   G L++V++LL  GAD     + +  G+TPL+LAA   H EI   +L+       + 
Sbjct: 87  AALIGHLEIVEVLLKHGAD---VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQD 143
Query: 193 PNGKTAL 199
             GKTA 
Sbjct: 144 KFGKTAF 150

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 62/128 (48%), Gaps = 21/128 (16%)
Query: 73  QVNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEED 129
            VNAK   G  PLH+AAR GH  +VE L           +++G +  A+   G       
Sbjct: 27  DVNAKDKDGYTPLHLAAREGHLEIVEVL-----------LKAGADVNAKDKDGY------ 69
Query: 130 TALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPA 189
           T LH A + G L++V++LL A  A   + +  G TPL+LAA   H EI   +L+      
Sbjct: 70  TPLHLAAREGHLEIVEVLLKA-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 190 HEGPNGKT 197
            +   GKT
Sbjct: 129 AQDKFGKT 136

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 62/128 (48%), Gaps = 21/128 (16%)
Query: 73  QVNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEED 129
            VNAK   G  PLH+AAR GH  +VE L           +++G +  A+   G       
Sbjct: 27  DVNAKDKDGYTPLHLAAREGHLEIVEVL-----------LKAGADVNAKDKDGY------ 69
Query: 130 TALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPA 189
           T LH A + G L++V++LL A  A   + +  G TPL+LAA   H EI   +L+      
Sbjct: 70  TPLHLAAREGHLEIVEVLLKA-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 190 HEGPNGKT 197
            +   GKT
Sbjct: 129 AQDKFGKT 136

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 25/132 (18%)
Query: 73  QVNA---KGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEED 129
            VNA    G  PLH+AA  GH  +VE L           +++G +  A  + G+      
Sbjct: 39  DVNATDNDGYTPLHLAASNGHLEIVEVL-----------LKNGADVNASDLTGI------ 81
Query: 130 TALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPS 187
           T LH A  +G L++V++LL  GAD     + +  G TPL+LAA   H EI   +L+    
Sbjct: 82  TPLHLAAATGHLEIVEVLLKHGAD---VNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGAD 138
Query: 188 PAHEGPNGKTAL 199
              +   GKTA 
Sbjct: 139 VNAQDKFGKTAF 150

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 61/129 (47%), Gaps = 24/129 (18%)
Query: 74  VNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALH 133
           V+  G  PLH+AA  GH  +VE L           ++ G +  A  + G       T LH
Sbjct: 43  VDNTGLTPLHLAAVSGHLEIVEVL-----------LKHGADVDAADVYGF------TPLH 85
Query: 134 EAVQSGSLDVVKILL--GAD-PAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAH 190
            A  +G L++V++LL  GAD  AF      +G TPL+LAA   H EI   +L+       
Sbjct: 86  LAAMTGHLEIVEVLLKYGADVNAFDM----TGSTPLHLAADEGHLEIVEVLLKYGADVNA 141
Query: 191 EGPNGKTAL 199
           +   GKTA 
Sbjct: 142 QDKFGKTAF 150

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 57/127 (44%), Gaps = 22/127 (17%)
Query: 75  NAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHE 134
           ++ G  PLH AA+ GH  +V+ LI             G +  A+   G       T LH 
Sbjct: 34  DSDGRTPLHYAAKEGHKEIVKLLIS-----------KGADVNAKDSDGR------TPLHY 76
Query: 135 AVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEG 192
           A + G  ++VK+L+  GAD     S    G TPL+ AA   HKEI   ++ K        
Sbjct: 77  AAKEGHKEIVKLLISKGADVNAKDS---DGRTPLHYAAKEGHKEIVKLLISKGADVNTSD 133
Query: 193 PNGKTAL 199
            +G+T L
Sbjct: 134 SDGRTPL 140

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 63/132 (47%), Gaps = 25/132 (18%)
Query: 73  QVNAKGDA---PLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEED 129
            VNA+ D+   PLH+AA  GH  +VE L           ++ G +  A   +G      D
Sbjct: 39  DVNAEDDSGKTPLHLAAIKGHLEIVEVL-----------LKHGADVNAADKMG------D 81
Query: 130 TALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPS 187
           T LH A   G L++V++LL  GAD     + +  G TPL+LAA   H EI   +L+    
Sbjct: 82  TPLHLAALYGHLEIVEVLLKNGAD---VNATDTYGFTPLHLAADAGHLEIVEVLLKYGAD 138
Query: 188 PAHEGPNGKTAL 199
              +   GKTA 
Sbjct: 139 VNAQDKFGKTAF 150

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 60/113 (53%), Gaps = 18/113 (15%)
Query: 75  NAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVE-----STARHM--------- 120
           +A+G   LH+AA+ GH  VV+ L+   + + + + + G       +  +H+         
Sbjct: 74  DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK 133
Query: 121 ---LGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAA 170
              + ++++EE+  LH A  SG +D+ +ILL A     ++ N  G++PL++AA
Sbjct: 134 GSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPLHIAA 185

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 57/124 (45%), Gaps = 22/124 (17%)
Query: 78  GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQ 137
           G  PLH+AA  GH  +VE L           + +G +  A    G       T LH A  
Sbjct: 35  GRTPLHMAAAVGHLEIVEVL-----------LRNGADVNAVDTNGT------TPLHLAAS 77
Query: 138 SGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNG 195
            G L++V++LL  GAD     + + +G TPLYLAA   H EI   +L+       +   G
Sbjct: 78  LGHLEIVEVLLKYGADVN---AKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFG 134
Query: 196 KTAL 199
           KTA 
Sbjct: 135 KTAF 138

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 58/125 (46%), Gaps = 24/125 (19%)
Query: 78  GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQ 137
           G  PLH+AA+ GH  +VE L++            G +  A    G       T LH A  
Sbjct: 47  GHTPLHLAAKTGHLEIVEVLLKY-----------GADVNAWDNYGA------TPLHLAAD 89
Query: 138 SGSLDVVKILL--GAD-PAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPN 194
           +G L++V++LL  GAD  A  Y     G TPL+LAA   H EI   +L+       +   
Sbjct: 90  NGHLEIVEVLLKHGADVNAKDY----EGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKF 145
Query: 195 GKTAL 199
           GKTA 
Sbjct: 146 GKTAF 150

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 57/127 (44%), Gaps = 22/127 (17%)
Query: 75  NAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHE 134
           ++ G  PLH AA  GH  VV+ LI             G +  A+   G       T LH 
Sbjct: 34  DSDGRTPLHHAAENGHKEVVKLLIS-----------KGADVNAKDSDGR------TPLHH 76
Query: 135 AVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEG 192
           A ++G  +VVK+L+  GAD     S    G TPL+ AA   HKE+   ++ K        
Sbjct: 77  AAENGHKEVVKLLISKGADVNAKDS---DGRTPLHHAAENGHKEVVKLLISKGADVNTSD 133
Query: 193 PNGKTAL 199
            +G+T L
Sbjct: 134 SDGRTPL 140

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 57/124 (45%), Gaps = 22/124 (17%)
Query: 78  GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQ 137
           G  PLH+AA  GH  +VE L           ++ G +  A  + G       T LH A  
Sbjct: 47  GTTPLHLAAYSGHLEIVEVL-----------LKHGADVDASDVFGY------TPLHLAAY 89
Query: 138 SGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNG 195
            G L++V++LL  GAD     + +  G TPL+LAA   + EI   +L+       +   G
Sbjct: 90  WGHLEIVEVLLKNGADVN---AMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFG 146
Query: 196 KTAL 199
           KTA 
Sbjct: 147 KTAF 150

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 60/128 (46%), Gaps = 24/128 (18%)
Query: 75  NAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHE 134
           +A G  PLH+AA  GH  +VE L           +++G +  A    GM      T L  
Sbjct: 44  DASGWTPLHLAAFNGHLEIVEVL-----------LKNGADVNAVDHAGM------TPLRL 86
Query: 135 AVQSGSLDVVKILL--GADPAFPYSANG-SGETPLYLAAARAHKEISAEILQKCPSPAHE 191
           A   G L++V++LL  GAD     +AN   G TPL+LAA   H EI   +L+       +
Sbjct: 87  AALFGHLEIVEVLLKNGAD----VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQ 142
Query: 192 GPNGKTAL 199
              GKTA 
Sbjct: 143 DKFGKTAF 150

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 21/137 (15%)
Query: 46  YTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQES 105
           +TQ +EG +V+ +     ++   + L Q +  G +PLH A R G +AVVE LI    +  
Sbjct: 10  FTQCREGNAVAVRL---WLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-- 64
Query: 106 DQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETP 165
                          + + N  +DT LH A   G  D+V+ LL    A   + N  G  P
Sbjct: 65  ---------------INVMNRGDDTPLHLAASHGHRDIVQKLLQY-KADINAVNEHGNVP 108
Query: 166 LYLAAARAHKEISAEIL 182
           L+ A      +++ +++
Sbjct: 109 LHYACFWGQDQVAEDLV 125

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 21/137 (15%)
Query: 46  YTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQES 105
           +TQ +EG +V+ +     ++   + L Q +  G +PLH A R G +AVVE LI    +  
Sbjct: 5   FTQCREGNAVAVRL---WLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-- 59
Query: 106 DQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETP 165
                          + + N  +DT LH A   G  D+V+ LL    A   + N  G  P
Sbjct: 60  ---------------INVMNRGDDTPLHLAASHGHRDIVQKLLQY-KADINAVNEHGNVP 103
Query: 166 LYLAAARAHKEISAEIL 182
           L+ A      +++ +++
Sbjct: 104 LHYACFWGQDQVAEDLV 120

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 97  LIEIAKQESDQEIE----SGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADP 152
           L+E A+   D E+     +G +  A    G+      T LH  V +G L+++++LL    
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNANDWFGI------TPLHLVVNNGHLEIIEVLLKY-A 70
Query: 153 AFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALH 200
           A   +++ SG TPL+LAA R H EI   +L+           G T LH
Sbjct: 71  ADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLH 118

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 18/100 (18%)
Query: 78  GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQ 137
           G+ PLH AA+ GHA  V+ L           +  G +  AR   G      +T LH A +
Sbjct: 9   GNTPLHNAAKNGHAEEVKKL-----------LSKGADVNARSKDG------NTPLHLAAK 51
Query: 138 SGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEI 177
           +G  ++VK+LL A  A   + +  G TP +LA    H EI
Sbjct: 52  NGHAEIVKLLL-AKGADVNARSKDGNTPEHLAKKNGHHEI 90

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 18/132 (13%)
Query: 69  SLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEE 128
           SL  + +      LH A   GH  +VE L+++    +D                 K+D  
Sbjct: 31  SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-----------------KDDAG 73
Query: 129 DTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSP 188
            + LH A  +G  ++VK LLG   A   + N +G TPL+ AA++   EI+  +L+   +P
Sbjct: 74  WSPLHIAASAGRDEIVKALLG-KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
Query: 189 AHEGPNGKTALH 200
             +     TA+H
Sbjct: 133 DAKDHYEATAMH 144

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 18/132 (13%)
Query: 69  SLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEE 128
           SL  + +      LH A   GH  +VE L+++    +D                 K+D  
Sbjct: 32  SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-----------------KDDAG 74
Query: 129 DTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSP 188
            + LH A  +G  ++VK LLG   A   + N +G TPL+ AA++   EI+  +L+   +P
Sbjct: 75  WSPLHIAASAGRDEIVKALLG-KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 133
Query: 189 AHEGPNGKTALH 200
             +     TA+H
Sbjct: 134 DAKDHYEATAMH 145

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 26/118 (22%)
Query: 73  QVNAKGDA---PLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEED 129
            VNA  DA   PLH+AA+ GH  +VE L           ++ G +  AR + G       
Sbjct: 39  DVNAMDDAGVTPLHLAAKRGHLEIVEVL-----------LKHGADVNARDIWGR------ 81
Query: 130 TALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKC 185
           T LH A   G L++V++LL  GAD     + +  G+T   ++    ++++ AEILQK 
Sbjct: 82  TPLHLAATVGHLEIVEVLLEYGAD---VNAQDKFGKTAFDISIDNGNEDL-AEILQKL 135

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 15/109 (13%)
Query: 97  LIEIAKQESDQEIE----SGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILL--GA 150
           L+E A+   D E+     +G +  A    G+      T LH A Q G L++V++LL  GA
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNALDEDGL------TPLHLAAQLGHLEIVEVLLKYGA 71
Query: 151 DPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTAL 199
           D     + +  G TPL+LAA R H EI   +L+       +   GKTA 
Sbjct: 72  DV---NAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAF 117

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 19/140 (13%)
Query: 61  ERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHM 120
           ERI+    SL  + +      LH A   GH  +VE L+++    +D              
Sbjct: 24  ERILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-------------- 68
Query: 121 LGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAE 180
              K+D   + LH A  +G  ++VK LL    A   + N +G TPL+ AA++   EI+  
Sbjct: 69  ---KDDAGWSPLHIAASAGXDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVM 124
Query: 181 ILQKCPSPAHEGPNGKTALH 200
           +L+   +P  +     TA+H
Sbjct: 125 LLEGGANPDAKDHYDATAMH 144

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 19/140 (13%)
Query: 61  ERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHM 120
           ERI+    SL  + +      LH A   GH  +VE L+++    +D              
Sbjct: 24  ERILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-------------- 68
Query: 121 LGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAE 180
              K+D   + LH A  +G  ++VK LL    A   + N +G TPL+ AA++   EI+  
Sbjct: 69  ---KDDAGWSPLHIAASAGRDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVM 124
Query: 181 ILQKCPSPAHEGPNGKTALH 200
           +L+   +P  +     TA+H
Sbjct: 125 LLEGGANPDAKDHYDATAMH 144

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	264
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-21
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-20
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-19
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-21
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-18
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-14
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-21
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-19
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-19
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-19
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-19
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-18
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-21
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-18
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-17
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-16
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-10
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-20
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-17
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-16
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-13
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-09
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-20
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-19
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-18
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-17
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-15
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-15
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-06
2etb_A	256	Transient receptor potential cation channel subfam	3e-20
2etb_A	256	Transient receptor potential cation channel subfam	1e-18
2etb_A	256	Transient receptor potential cation channel subfam	3e-18
2etb_A	256	Transient receptor potential cation channel subfam	2e-09
2etb_A	256	Transient receptor potential cation channel subfam	1e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-20
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	9e-20
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-18
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-12
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-20
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-18
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-17
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-15
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-11
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-20
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-20
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-18
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-17
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-17
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-14
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-10
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-07
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-20
3v30_A	172	DNA-binding protein rfxank; structural genomics co	8e-19
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-18
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-14
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-12
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-20
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-19
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-11
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-08
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-20
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-20
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-12
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-20
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-17
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-16
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	8e-12
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-19
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	8e-18
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-17
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-19
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-17
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-16
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-15
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-19
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-18
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-18
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-11
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-09
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-19
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-19
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-15
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-11
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-19
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-19
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-18
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-18
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-17
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-10
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	8e-19
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-17
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-11
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-11
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	8e-19
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-18
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-17
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-18
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-18
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-16
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-18
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-17
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-15
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-18
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-18
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-11
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-18
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-18
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-17
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-17
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-18
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-16
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-16
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-15
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-14
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-18
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-17
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-17
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-16
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-14
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-07
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-18
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-17
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-17
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-15
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-09
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-18
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-16
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-15
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-09
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	8e-04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-18
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-18
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-16
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-18
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-16
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-18
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-17
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-12
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-17
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-13
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-04
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-17
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-14
2rfa_A	232	Transient receptor potential cation channel subfa	1e-17
2rfa_A	232	Transient receptor potential cation channel subfa	3e-17
2rfa_A	232	Transient receptor potential cation channel subfa	6e-16
2rfa_A	232	Transient receptor potential cation channel subfa	1e-11
2rfa_A	232	Transient receptor potential cation channel subfa	3e-09
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-17
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-16
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-15
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-14
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-14
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-07
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-17
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	8e-12
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	7e-11
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-17
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-17
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-16
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-17
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-16
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-10
3jxi_A	260	Vanilloid receptor-related osmotically activated p	6e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-17
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-17
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-08
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-17
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-11
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-17
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-16
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-15
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-09
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	6e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-16
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-15
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-11
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-16
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-16
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-15
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-04
2pnn_A	273	Transient receptor potential cation channel subfa	4e-16
2pnn_A	273	Transient receptor potential cation channel subfa	3e-11
2pnn_A	273	Transient receptor potential cation channel subfa	2e-04
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-14
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	8e-14
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-11
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-08
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-13
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-11
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-06
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-13
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-11
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-08
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-07
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-09
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-07
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-06
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	7e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 88.8 bits (221), Expect = 2e-21
 Identities = 40/178 (22%), Positives = 58/178 (32%), Gaps = 42/178 (23%)

Query: 36  TVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ----VNAK---GDAPLHVAARY 88
           T LH   +A  T   E           I E     LL        +   G+ PLH+A   
Sbjct: 47  TPLH---LAVITNQPE-----------IAE----ALLGAGCDPELRDFRGNTPLHLACEQ 88

Query: 89  GHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILL 148
           G  A V  L +           S        +L   N    T LH A   G L +V++L+
Sbjct: 89  GCLASVGVLTQ-----------SCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLV 137

Query: 149 --GADPAFPYSANGSGETPLYLAAARAHKEISAEIL-QKCPSPAHEGPNGKTALHAAV 203
             GAD         +G T L+LA    + ++   +L +           G +      
Sbjct: 138 SLGADVNAQ--EPCNGRTALHLAVDLQNPDL-VSLLLKCGADVNRVTYQGYSPYQLTW 192

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 85.3 bits (212), Expect = 3e-20
 Identities = 35/139 (25%), Positives = 53/139 (38%), Gaps = 24/139 (17%)

Query: 73  QVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTAL 132
           Q+   GD+ LH+A  +   A+   +I                      L  +N+ + T L
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQV-------KGDLAF------LNFQNNLQQTPL 49

Query: 133 HEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAH 190
           H AV +   ++ + LL  G DP      +  G TPL+LA  +        + Q C +P  
Sbjct: 50  HLAVITNQPEIAEALLGAGCDPE---LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 106

Query: 191 EGP------NGKTALHAAV 203
                    NG T LH A 
Sbjct: 107 HSILKATNYNGHTCLHLAS 125

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 83.4 bits (207), Expect = 2e-19
 Identities = 40/176 (22%), Positives = 59/176 (33%), Gaps = 36/176 (20%)

Query: 35  NTVLHVNIIASYTQNKEGESVSTKFVERIIEMC--PSLLLQVNAK---GDAPLHVAARYG 89
           NT LH   +A               V  + + C  P L   + A    G   LH+A+ +G
Sbjct: 79  NTPLH---LACEQGCLA-------SVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 128

Query: 90  HAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILL- 148
           +  +VE L+             G +  A+           TALH AV   + D+V +LL 
Sbjct: 129 YLGIVELLVS-----------LGADVNAQE-----PCNGRTALHLAVDLQNPDLVSLLLK 172

Query: 149 -GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAV 203
            GAD          G +P  L   R    I  ++ Q         P  +       
Sbjct: 173 CGADV---NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDT 225

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 17/116 (14%), Positives = 32/116 (27%), Gaps = 42/116 (36%)

Query: 36  TVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ----VNAK---GDAPLHVAARY 88
           T LH   +A   QN +           ++     LLL+    VN     G +P  +    
Sbjct: 153 TALH---LAVDLQNPD-----------LVS----LLLKCGADVNRVTYQGYSPYQLTWGR 194

Query: 89  GHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVV 144
               + + L +             +E+           E +       +S   +  
Sbjct: 195 PSTRIQQQLGQ-----------LTLENLQ------MLPESEDEESYDTESEFTEFT 233

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 87.7 bits (218), Expect = 4e-21
 Identities = 36/203 (17%), Positives = 57/203 (28%), Gaps = 43/203 (21%)

Query: 5   LYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERII 64
            ++  +KG         +  Q         +  LH    A+   N              +
Sbjct: 49  WWKGTSKGRTGLIPSNYVAEQ-----AESIDNPLH---EAAKRGNLS-----------WL 89

Query: 65  EMCPSLLLQVNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHML 121
             C    + VN     G   L+ A   GH  +VE L            +  +E       
Sbjct: 90  RECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFT----------QPNIELNQ---- 135

Query: 122 GMKNDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISA 179
             +N   DTALH A   G  D+V++LL  GA        N   +    +A   A   +  
Sbjct: 136 --QNKLGDTALHAAAWKGYADIVQLLLAKGART---DLRNIEKKLAFDMATNAACASLLK 190

Query: 180 EILQKCPSPAHEGPNGKTALHAA 202
           +                     +
Sbjct: 191 KKQGTDAVRTLSNAEDYLDDEDS 213

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 79.6 bits (197), Expect = 4e-18
 Identities = 31/148 (20%), Positives = 47/148 (31%), Gaps = 35/148 (23%)

Query: 78  GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARH--------------MLGM 123
           G   +  A         + L     +E D    + +  T                  +  
Sbjct: 12  GQVKVFRALYTFEPRTPDELY---IEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE 68

Query: 124 KNDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEI 181
           + +  D  LHEA + G+L  ++  L            + +G T LY A    HK+I  E+
Sbjct: 69  QAESIDNPLHEAAKRGNLSWLRECLDNRVG---VNGLDKAGSTALYWACHGGHKDI-VEM 124

Query: 182 LQKCPSPAHEGPN-------GKTALHAA 202
           L                   G TALHAA
Sbjct: 125 LFT-----QPNIELNQQNKLGDTALHAA 147

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 70.4 bits (173), Expect = 1e-14
 Identities = 31/147 (21%), Positives = 51/147 (34%), Gaps = 42/147 (28%)

Query: 35  NTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ----VNAK---GDAPLHVAAR 87
           +T L+    A +  +K+           I+EM   L  Q    +N +   GD  LH AA 
Sbjct: 107 STALY---WACHGGHKD-----------IVEM---LFTQPNIELNQQNKLGDTALHAAAW 149

Query: 88  YGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKIL 147
            G+A +V+ L+             G          ++N E+  A   A  +    ++K  
Sbjct: 150 KGYADIVQLLLA-----------KGAR------TDLRNIEKKLAFDMATNAACASLLKKK 192

Query: 148 LGADPAFPYSANGSGETPLYLAAARAH 174
            G D A    +N         +    H
Sbjct: 193 QGTD-AVRTLSNAEDYLDDEDSDLEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 8/80 (10%), Positives = 19/80 (23%), Gaps = 24/80 (30%)

Query: 70  LLLQ----VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLG 122
           LLL      + +         +A     A++++               +    T      
Sbjct: 158 LLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQG-----------TDAVRTL----- 201

Query: 123 MKNDEEDTALHEAVQSGSLD 142
             N E+     ++       
Sbjct: 202 -SNAEDYLDDEDSDLEHHHH 220

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 90.2 bits (225), Expect = 6e-21
 Identities = 49/179 (27%), Positives = 72/179 (40%), Gaps = 47/179 (26%)

Query: 35  NTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ----VNAK---GDAPLHVAAR 87
            T LH    A+   +             +++    LLL+     N     G  PLH+AAR
Sbjct: 81  QTPLH---CAARIGHTN-----------MVK----LLLENNANPNLATTAGHTPLHIAAR 122

Query: 88  YGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKIL 147
            GH   V AL+E   +E+ Q                   +  T LH A + G + V ++L
Sbjct: 123 EGHVETVLALLE---KEASQAC--------------MTKKGFTPLHVAAKYGKVRVAELL 165

Query: 148 L--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVC 204
           L   A P    +A  +G TPL++A    + +I   +L +  SP     NG T LH A  
Sbjct: 166 LERDAHP---NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAK 221

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 86.8 bits (216), Expect = 1e-19
 Identities = 49/184 (26%), Positives = 70/184 (38%), Gaps = 47/184 (25%)

Query: 31  THKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ----VNAK---GDAPLH 83
             K  T LH   +A+   + E           + +     LLQ    VNAK      PLH
Sbjct: 44  NVKVETPLH---MAARAGHTE-----------VAK----YLLQNKAKVNAKAKDDQTPLH 85

Query: 84  VAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDV 143
            AAR GH  +V+ L+E     ++  +                    T LH A + G ++ 
Sbjct: 86  CAARIGHTNMVKLLLE---NNANPNL--------------ATTAGHTPLHIAAREGHVET 128

Query: 144 VKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHA 201
           V  LL   A           G TPL++AA      ++  +L++   P   G NG T LH 
Sbjct: 129 VLALLEKEAS---QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHV 185

Query: 202 AVCS 205
           AV  
Sbjct: 186 AVHH 189

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 86.8 bits (216), Expect = 1e-19
 Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 25/135 (18%)

Query: 74  VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDT 130
            ++    G  PLH+AA+     V  +L++            G  + A      ++ +  T
Sbjct: 205 PHSPAWNGYTPLHIAAKQNQVEVARSLLQ-----------YGGSANA------ESVQGVT 247

Query: 131 ALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSP 188
            LH A Q G  ++V +LL   A+       N SG TPL+L A   H  ++  +++     
Sbjct: 248 PLHLAAQEGHAEMVALLLSKQANGN---LGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV 304

Query: 189 AHEGPNGKTALHAAV 203
                 G T LH A 
Sbjct: 305 DATTRMGYTPLHVAS 319

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 86.4 bits (215), Expect = 1e-19
 Identities = 45/143 (31%), Positives = 62/143 (43%), Gaps = 29/143 (20%)

Query: 70  LLLQ----VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLG 122
            LL+           G  PLHVAA+YG   V E L+E   +++                 
Sbjct: 131 ALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE---RDAHPNA------------- 174

Query: 123 MKNDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAE 180
                  T LH AV   +LD+VK+LL  G     P+S   +G TPL++AA +   E++  
Sbjct: 175 -AGKNGLTPLHVAVHHNNLDIVKLLLPRGGS---PHSPAWNGYTPLHIAAKQNQVEVARS 230

Query: 181 ILQKCPSPAHEGPNGKTALHAAV 203
           +LQ   S   E   G T LH A 
Sbjct: 231 LLQYGGSANAESVQGVTPLHLAA 253

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 84.9 bits (211), Expect = 4e-19
 Identities = 34/160 (21%), Positives = 61/160 (38%), Gaps = 34/160 (21%)

Query: 70  LLLQ----VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLG 122
           +L++    V+A    G  PLHVA+ YG+  +V+ L++    ++D                
Sbjct: 296 VLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ---HQADVNA------------- 339

Query: 123 MKNDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAE 180
            K     + LH+A Q G  D+V +LL  GA    P   +  G TPL +A    +  +  +
Sbjct: 340 -KTKLGYSPLHQAAQQGHTDIVTLLLKNGAS---PNEVSSDGTTPLAIAKRLGYISV-TD 394

Query: 181 ILQKCPS----PAHEGPNGKTALHAAVCSRSCAASRCHKL 216
           +L+              +  +           +     +L
Sbjct: 395 VLKVVTDETSFVLVSDKHRMSFPETVDEILDVSEDEGEEL 434

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 82.2 bits (204), Expect = 4e-18
 Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 25/135 (18%)

Query: 74  VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDT 130
                  G  PLHVA+  GH  +V+ L++   + +   +               N + +T
Sbjct: 7   GGGGGESGLTPLHVASFMGHLPIVKNLLQ---RGASPNV--------------SNVKVET 49

Query: 131 ALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSP 188
            LH A ++G  +V K LL   A      +     +TPL+ AA   H  +   +L+   +P
Sbjct: 50  PLHMAARAGHTEVAKYLLQNKAK---VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANP 106

Query: 189 AHEGPNGKTALHAAV 203
                 G T LH A 
Sbjct: 107 NLATTAGHTPLHIAA 121

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 87.5 bits (218), Expect = 7e-21
 Identities = 37/140 (26%), Positives = 53/140 (37%), Gaps = 27/140 (19%)

Query: 74  VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDT 130
                  GD PLH+A   G+   V  L+ +         + G E      L + N+   T
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLF-------QQGGRE------LDIYNNLRQT 48

Query: 131 ALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSP 188
            LH AV +    VV++L+  GA P    + +  G+T  +LA            L    +P
Sbjct: 49  PLHLAVITTLPSVVRLLVTAGASPM---ALDRHGQTAAHLACEHRSPTC-LRALLDSAAP 104

Query: 189 AHEGPN-----GKTALHAAV 203
                      G TALH AV
Sbjct: 105 GTLDLEARNYDGLTALHVAV 124

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 81.3 bits (202), Expect = 1e-18
 Identities = 43/186 (23%), Positives = 65/186 (34%), Gaps = 60/186 (32%)

Query: 36  TVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ----VNAK---GDAPLHVAARY 88
           T LH   +A  T               ++     LL+       A    G    H+A  +
Sbjct: 48  TPLH---LAVITTLPS-----------VVR----LLVTAGASPMALDRHGQTAAHLACEH 89

Query: 89  GHAAVVEALIEI-AKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKIL 147
                + AL++  A    D E               +N +  TALH AV +   + V++L
Sbjct: 90  RSPTCLRALLDSAAPGTLDLEA--------------RNYDGLTALHVAVNTECQETVQLL 135

Query: 148 L--GADP-AFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPN-------GKT 197
           L  GAD  A       SG +PL  A       +  ++L +       G N       G +
Sbjct: 136 LERGADIDA---VDIKSGRSPLIHAVENNSLSM-VQLLLQ------HGANVNAQMYSGSS 185

Query: 198 ALHAAV 203
           ALH+A 
Sbjct: 186 ALHSAS 191

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 77.9 bits (193), Expect = 3e-17
 Identities = 36/182 (19%), Positives = 62/182 (34%), Gaps = 52/182 (28%)

Query: 35  NTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAK---GDAPLHVAARYGHA 91
            T  H   +A   ++          +  +++      L + A+   G   LHVA      
Sbjct: 80  QTAAH---LACEHRSPT-------CLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQ 129

Query: 92  AVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEED--TALHEAVQSGSLDVVKILL- 148
             V+ L+E            G +  A        D +   + L  AV++ SL +V++LL 
Sbjct: 130 ETVQLLLE-----------RGADIDAV-------DIKSGRSPLIHAVENNSLSMVQLLLQ 171

Query: 149 -GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPN-------GKTALH 200
            GA+     +   SG + L+ A+ R    +    L         G +         T L 
Sbjct: 172 HGANV---NAQMYSGSSALHSASGRGLLPL-VRTL------VRSGADSSLKNCHNDTPLM 221

Query: 201 AA 202
            A
Sbjct: 222 VA 223

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 74.0 bits (183), Expect = 6e-16
 Identities = 36/157 (22%), Positives = 58/157 (36%), Gaps = 49/157 (31%)

Query: 36  TVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLL----QVNAK----GDAPLHVAAR 87
           T LH   +A  T+ +E            ++    LLL     ++A     G +PL  A  
Sbjct: 118 TALH---VAVNTECQE-----------TVQ----LLLERGADIDAVDIKSGRSPLIHAVE 159

Query: 88  YGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKIL 147
               ++V+ L++            G    A      +     +ALH A   G L +V+ L
Sbjct: 160 NNSLSMVQLLLQ-----------HGANVNA------QMYSGSSALHSASGRGLLPLVRTL 202

Query: 148 L--GADPAFPYSANGSGETPLYLAAARAHKEISAEIL 182
           +  GAD       N   +TPL +A +R   +I     
Sbjct: 203 VRSGAD---SSLKNCHNDTPLMVARSRRVIDI-LRGK 235

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 58.6 bits (143), Expect = 2e-10
 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 11/91 (12%)

Query: 120 MLGMKNDEEDTALHEAVQSGSLDVVKILL------GADPAFPYSANGSGETPLYLAAARA 173
           M    +++ DT LH AV  G+L  V  L+      G +       N   +TPL+LA    
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE---LDIYNNLRQTPLHLAVITT 57

Query: 174 HKEISAEIL-QKCPSPAHEGPNGKTALHAAV 203
              +   +L     SP     +G+TA H A 
Sbjct: 58  LPSV-VRLLVTAGASPMALDRHGQTAAHLAC 87

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 55.9 bits (136), Expect = 2e-09
 Identities = 27/125 (21%), Positives = 43/125 (34%), Gaps = 44/125 (35%)

Query: 35  NTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ----VNAK---GDAPLHVAAR 87
            + L     A    +             +++    LLLQ    VNA+   G + LH A+ 
Sbjct: 151 RSPLI---HAVENNSLS-----------MVQ----LLLQHGANVNAQMYSGSSALHSASG 192

Query: 88  YGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKIL 147
            G   +V  L+            SG +S+       KN   DT L  A     +D+++  
Sbjct: 193 RGLLPLVRTLVR-----------SGADSSL------KNCHNDTPLMVARSRRVIDILRGK 235

Query: 148 L--GA 150
               A
Sbjct: 236 ATRPA 240

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 88.1 bits (219), Expect = 3e-20
 Identities = 36/193 (18%), Positives = 62/193 (32%), Gaps = 53/193 (27%)

Query: 35  NTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ----VNAK---GDAPLHVAAR 87
            TVLH     +   + E         E +I       +     VNA     + PL +A  
Sbjct: 126 RTVLH---WIASNSSAE-------KSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVL 175

Query: 88  YGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKIL 147
                +V  L++            G + T        N  E +ALH+A  +    ++  +
Sbjct: 176 ARRRRLVAYLMKA-----------GADPTI------YNKSERSALHQAAANRDFGMMVYM 218

Query: 148 L-----GADPAFPYSANGSGETPLYLAAARAHKE--------IS--AEILQKCPSPAHEG 192
           L       D       + +G T L + A    ++        +   A++     +     
Sbjct: 219 LNSTKLKGD---IEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSE 275

Query: 193 PN-GKTALHAAVC 204
              G+TALH A  
Sbjct: 276 KYKGRTALHYAAQ 288

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 78.5 bits (194), Expect = 7e-17
 Identities = 36/186 (19%), Positives = 69/186 (37%), Gaps = 31/186 (16%)

Query: 5   LYEAAAKGEIEPFNQLAIDRQLGSLVTHKKN---TVLHVNIIASYTQNKEGESVSTKFVE 61
           L++AAA  +      +    +L   +        T L    I ++ + ++  + +   VE
Sbjct: 203 LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALM---IVAHNEGRDQVASAKLLVE 259

Query: 62  R---IIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTAR 118
           +   +     +       KG   LH AA+  +  +V+ L+           E G      
Sbjct: 260 KGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVG----------EKGSN---- 305

Query: 119 HMLGMKNDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKE 176
                ++++  T +  A Q G ++VV  L+  GA      + + +  T   LA A  H  
Sbjct: 306 --KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV---EAVDATDHTARQLAQANNHHN 360

Query: 177 ISAEIL 182
           I  +I 
Sbjct: 361 I-VDIF 365

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 75.4 bits (186), Expect = 6e-16
 Identities = 29/137 (21%), Positives = 50/137 (36%), Gaps = 17/137 (12%)

Query: 74  VNAK---GDAPLHVAARYGH---AAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDE 127
           +      G   L + A        A  + L+E   + +  + +      +      +  +
Sbjct: 228 IEELDRNGMTALMIVAHNEGRDQVASAKLLVE---KGAKVDYDGAARKDS------EKYK 278

Query: 128 EDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEIL-QKCP 186
             TALH A Q  ++ +VK L+G   +     +  G+TP+ LAA     E+    L Q+  
Sbjct: 279 GRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEV-VMYLIQQGA 337

Query: 187 SPAHEGPNGKTALHAAV 203
           S         TA   A 
Sbjct: 338 SVEAVDATDHTARQLAQ 354

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 68.8 bits (169), Expect = 1e-13
 Identities = 19/141 (13%), Positives = 36/141 (25%), Gaps = 34/141 (24%)

Query: 78  GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQ 137
              P       G+  + +      +  ++                    E    LH    
Sbjct: 61  SLYPNPQGYGNGNDFLGDFNHTNLQIPTE-----------------PEPESPIKLHTEAA 103

Query: 138 SGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEIL--QKCPSPAHEGP 193
            GS  + + +     +            T L+  A+ +  E  +E L   +       G 
Sbjct: 104 -GSYAITEPITRESVNII----DPRHNRTVLHWIASNSSAEK-SEDLIVHEAKECIAAGA 157

Query: 194 N-------GKTALHAAVCSRS 207
           +         T L  AV +R 
Sbjct: 158 DVNAMDCDENTPLMLAVLARR 178

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 25/142 (17%), Positives = 46/142 (32%), Gaps = 46/142 (32%)

Query: 22  IDRQLGSLVTHKKN---TVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ----V 74
           +D    +    +K    T LH    A+   N             I++    L+ +     
Sbjct: 264 VDYDGAARKDSEKYKGRTALH---YAAQVSNMP-----------IVKY---LVGEKGSNK 306

Query: 75  NAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTA 131
           + +   G  P+ +AA+ G   VV  LI+   Q +  E                +  + TA
Sbjct: 307 DKQDEDGKTPIMLAAQEGRIEVVMYLIQ---QGASVEA--------------VDATDHTA 349

Query: 132 LHEAVQSGSLDVVKILL--GAD 151
              A  +   ++V I      +
Sbjct: 350 RQLAQANNHHNIVDIFDRCRPE 371

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 14/133 (10%), Positives = 26/133 (19%), Gaps = 33/133 (24%)

Query: 73  QVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTAL 132
           Q        L  A+  G+                                          
Sbjct: 32  QSITSSQHSLLEASYDGYIKRQRNE--------------------------LQHYSLYPN 65

Query: 133 HEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAH 190
            +   +G+  +          P             L+  AA     I  E + +      
Sbjct: 66  PQGYGNGNDFLGDFNHTNLQIPT---EPEPESPIKLHTEAAG-SYAI-TEPITRESVNII 120

Query: 191 EGPNGKTALHAAV 203
           +  + +T LH   
Sbjct: 121 DPRHNRTVLHWIA 133

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 86.8 bits (216), Expect = 3e-20
 Identities = 34/135 (25%), Positives = 49/135 (36%), Gaps = 28/135 (20%)

Query: 74  VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDT 130
           VN       +PLH A   GH + V+ L++            G +            +  T
Sbjct: 85  VNIITADHVSPLHEACLGGHLSCVKILLK-----------HGAQVNG------VTADWHT 127

Query: 131 ALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEIL-QKCPS 187
            L  A  SGS D V +LL  GA             +P++ AA R H E     L     +
Sbjct: 128 PLFNACVSGSWDCVNLLLQHGASV----QPESDLASPIHEAARRGHVEC-VNSLIAYGGN 182

Query: 188 PAHEGPNGKTALHAA 202
             H+  +  T L+ A
Sbjct: 183 IDHKISHLGTPLYLA 197

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 83.7 bits (208), Expect = 4e-19
 Identities = 32/141 (22%), Positives = 52/141 (36%), Gaps = 29/141 (20%)

Query: 70  LLLQ----VNAK--GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGM 123
           LLLQ    V  +    +P+H AAR GH   V +LI       + +               
Sbjct: 143 LLLQHGASVQPESDLASPIHEAARRGHVECVNSLIA---YGGNIDH-------------- 185

Query: 124 KNDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEI 181
           K     T L+ A ++     VK LL  GAD     +     ++PL+     A +E++  +
Sbjct: 186 KISHLGTPLYLACENQQRACVKKLLESGADV----NQGKGQDSPLHAVVRTASEELACLL 241

Query: 182 LQKCPSPAHEGPNGKTALHAA 202
           +        +   GK  +   
Sbjct: 242 MDFGADTQAKNAEGKRPVELV 262

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 81.8 bits (203), Expect = 1e-18
 Identities = 29/138 (21%), Positives = 48/138 (34%), Gaps = 29/138 (21%)

Query: 73  QVNAK---GDAPLHVAARYGHAAVVEALIEI-AKQESDQEIESGVESTARHMLGMKNDEE 128
           QVN        PL  A   G    V  L++  A       ++                + 
Sbjct: 117 QVNGVTADWHTPLFNACVSGSWDCVNLLLQHGA------SVQ-------------PESDL 157

Query: 129 DTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCP 186
            + +HEA + G ++ V  L+  G +            TPLYLA     +    + L +  
Sbjct: 158 ASPIHEAARRGHVECVNSLIAYGGNID---HKISHLGTPLYLACENQQRAC-VKKLLESG 213

Query: 187 SPAHEGPNGKTALHAAVC 204
           +  ++G    + LHA V 
Sbjct: 214 ADVNQGKGQDSPLHAVVR 231

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 77.5 bits (192), Expect = 6e-17
 Identities = 34/141 (24%), Positives = 47/141 (33%), Gaps = 28/141 (19%)

Query: 70  LLLQVNAKGDA-----PLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMK 124
            LL     GDA     P+H AA +GH   +  L           I  G            
Sbjct: 46  RLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNL-----------ISQGWAVNI------I 88

Query: 125 NDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEIL 182
             +  + LHEA   G L  VKILL  GA             TPL+ A      +    +L
Sbjct: 89  TADHVSPLHEACLGGHLSCVKILLKHGAQ---VNGVTADWHTPLFNACVSGSWDC-VNLL 144

Query: 183 QKCPSPAHEGPNGKTALHAAV 203
            +  +      +  + +H A 
Sbjct: 145 LQHGASVQPESDLASPIHEAA 165

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 71.8 bits (177), Expect = 6e-15
 Identities = 22/136 (16%), Positives = 39/136 (28%), Gaps = 21/136 (15%)

Query: 84  VAARYGHAAVVEALIE----IAKQESDQEIESG-----VESTARHML---GMKNDEED-- 129
           + + + H      L+     +A  +  Q    G             L    +  D     
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDW 60

Query: 130 TALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEIL-QKCP 186
           + +HEA   G    ++ L+  G              +PL+ A    H     +IL +   
Sbjct: 61  SPMHEAAIHGHQLSLRNLISQGWA---VNIITADHVSPLHEACLGGHLSC-VKILLKHGA 116

Query: 187 SPAHEGPNGKTALHAA 202
                  +  T L  A
Sbjct: 117 QVNGVTADWHTPLFNA 132

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 71.8 bits (177), Expect = 7e-15
 Identities = 33/185 (17%), Positives = 64/185 (34%), Gaps = 55/185 (29%)

Query: 5   LYEAAAKGEIEPFNQLAIDRQLGSLVTHKKN--TVLHVNIIASYTQNKEGESVSTKFVER 62
           L+ A   G  +  N L +    G+ V  + +  + +H    A+   + E           
Sbjct: 129 LFNACVSGSWDCVNLL-LQH--GASVQPESDLASPIH---EAARRGHVE----------- 171

Query: 63  IIEMCPSLLLQ----VNAK---GDAPLHVAARYGHAAVVEALIEI-AKQESDQEIESGVE 114
            +      L+     ++ K      PL++A      A V+ L+E  A             
Sbjct: 172 CVN----SLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN---------- 217

Query: 115 STARHMLGMKNDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAAR 172
                    +   +D+ LH  V++ S ++  +L+  GAD     + N  G+ P+ L    
Sbjct: 218 ---------QGKGQDSPLHAVVRTASEELACLLMDFGAD---TQAKNAEGKRPVELVPPE 265

Query: 173 AHKEI 177
           +    
Sbjct: 266 SPLAQ 270

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 47.1 bits (113), Expect = 2e-06
 Identities = 33/158 (20%), Positives = 53/158 (33%), Gaps = 48/158 (30%)

Query: 5   LYEAAAKGEIEPFNQLAIDRQLGSLVTHKKN---TVLHVNIIASYTQNKEGESVSTKFVE 61
           ++EAA +G +E  N L I    G  + HK +   T L+   +A   Q +           
Sbjct: 161 IHEAARRGHVECVNSL-IAY--GGNIDHKISHLGTPLY---LACENQQRA---------- 204

Query: 62  RIIEMCPSLLL----QVNAK--GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVES 115
             ++     LL     VN     D+PLH   R     +   L++            G ++
Sbjct: 205 -CVK----KLLESGADVNQGKGQDSPLHAVVRTASEELACLLMD-----------FGADT 248

Query: 116 TARHMLGMKNDEEDTALHEAVQSGSLDVVKILL-GADP 152
            A      KN E    +        L  + +   GA  
Sbjct: 249 QA------KNAEGKRPVELVPPESPLAQLFLEREGASL 280

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 86.0 bits (213), Expect = 3e-20
 Identities = 38/147 (25%), Positives = 56/147 (38%), Gaps = 24/147 (16%)

Query: 75  NAKGDAPLHVAA---RYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTA 131
            + G   L  A    + G  A +  L++I K   + +     + T     G       +A
Sbjct: 40  GSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGH------SA 93

Query: 132 LHEAVQSGSLDVVKILL--GAD----------PAFPYSANGSGETPLYLAAARAHKEISA 179
           LH A++  SL  VK+L+  GAD               +    GE PL LAA     ++  
Sbjct: 94  LHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVT 153

Query: 180 EILQKCPSPAH---EGPNGKTALHAAV 203
            +L+    PA        G T LHA V
Sbjct: 154 YLLENPHQPASLEATDSLGNTVLHALV 180

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 81.8 bits (202), Expect = 1e-18
 Identities = 38/129 (29%), Positives = 51/129 (39%), Gaps = 14/129 (10%)

Query: 78  GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGM--KNDEEDTALHEA 135
           G+ PL +AA      VV  L+E   Q +  E    + +T  H L M   N  E++AL   
Sbjct: 136 GELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIH 195

Query: 136 VQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGP 193
           +  G L +   L            +N  G TPL LAA     EI   ILQ+         
Sbjct: 196 MYDGLLQMGARLCPTVQLEE---ISNHQGLTPLKLAAKEGKIEIFRHILQR-------EF 245

Query: 194 NGKTALHAA 202
           +G  A H  
Sbjct: 246 SGAAAHHHH 254

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 80.6 bits (199), Expect = 3e-18
 Identities = 37/227 (16%), Positives = 64/227 (28%), Gaps = 33/227 (14%)

Query: 5   LYEAAAKGEIEPFNQL-----AIDRQLGSLVTHKKN---TVLHVNIIASYTQNKEGESVS 56
           L+   ++G  E    L        + L      + +   T L   ++             
Sbjct: 6   LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPL 65

Query: 57  TKFVERIIEMCPSLLLQVNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGV 113
            +  +      P +  Q   +   G + LH+A        V+ L+E     +D  + +  
Sbjct: 66  LQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVE---NGADVHLRACG 122

Query: 114 ESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAA 171
               +H        E   L  A  +   DVV  LL     PA   + +  G T L+    
Sbjct: 123 RFFQKHQGTCFYFGE-LPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVM 181

Query: 172 RA----------------HKEISAEILQKCPSPAHEGPNGKTALHAA 202
            A                  ++ A +             G T L  A
Sbjct: 182 IADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLA 228

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 55.6 bits (134), Expect = 2e-09
 Identities = 24/151 (15%), Positives = 40/151 (26%), Gaps = 37/151 (24%)

Query: 81  PLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAV---Q 137
            L      G    +  L+E  +  S    +S            +     T L +AV   Q
Sbjct: 5   RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYT---------EGSTGKTCLMKAVLNLQ 55

Query: 138 SGSLDVVKILL--GADPAFPYSANGS--------GETPLYLAAARAHKEISAEIL----- 182
            G    +  LL    D   P     +        G + L++A  +   +   ++L     
Sbjct: 56  DGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQC-VKLLVENGA 114

Query: 183 ---------QKCPSPAHEGPNGKTALHAAVC 204
                                G+  L  A C
Sbjct: 115 DVHLRACGRFFQKHQGTCFYFGELPLSLAAC 145

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 11/73 (15%)

Query: 35  NTVLHVNIIASYTQNKEGESV--------STKFVERIIEMCPSLLLQVNAKGDAPLHVAA 86
           NTVLH   +     N    S           +   R+        +  N +G  PL +AA
Sbjct: 173 NTVLH--ALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEIS-NHQGLTPLKLAA 229

Query: 87  RYGHAAVVEALIE 99
           + G   +   +++
Sbjct: 230 KEGKIEIFRHILQ 242

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 84.0 bits (209), Expect = 3e-20
 Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 27/136 (19%)

Query: 74  VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDT 130
           +N     G  PL  AA +G  AVVE L++     +D ++                   ++
Sbjct: 29  INHTDEEGFTPLMWAAAHGQIAVVEFLLQ---NGADPQL--------------LGKGRES 71

Query: 131 ALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEIL-QKCPS 187
           AL  A   G  D+VK+LL  G D       + +G TPL  A    H +   ++L +    
Sbjct: 72  ALSLACSKGYTDIVKMLLDCGVDV---NEYDWNGGTPLLYAVHGNHVKC-VKMLLESGAD 127

Query: 188 PAHEGPNGKTALHAAV 203
           P  E  +G  ++  AV
Sbjct: 128 PTIETDSGYNSMDLAV 143

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 82.4 bits (205), Expect = 9e-20
 Identities = 32/129 (24%), Positives = 46/129 (35%), Gaps = 24/129 (18%)

Query: 78  GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQ 137
               +H  A  G    +   IE   QE+                   ++E  T L  A  
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIE---QENVINH--------------TDEEGFTPLMWAAA 45

Query: 138 SGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEIL-QKCPSPAHEGPN 194
            G + VV+ LL  GAD   P       E+ L LA ++ + +I  ++L            N
Sbjct: 46  HGQIAVVEFLLQNGAD---PQLLGKGRESALSLACSKGYTDI-VKMLLDCGVDVNEYDWN 101

Query: 195 GKTALHAAV 203
           G T L  AV
Sbjct: 102 GGTPLLYAV 110

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 79.4 bits (197), Expect = 1e-18
 Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 30/122 (24%)

Query: 70  LLLQ----VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLG 122
            LLQ            ++ L +A   G+  +V+ L           ++ GV+        
Sbjct: 54  FLLQNGADPQLLGKGRESALSLACSKGYTDIVKML-----------LDCGVDVNE----- 97

Query: 123 MKNDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAE 180
             +    T L  AV    +  VK+LL  GAD   P     SG   + LA A  ++ +  +
Sbjct: 98  -YDWNGGTPLLYAVHGNHVKCVKMLLESGAD---PTIETDSGYNSMDLAVALGYRSV-QQ 152

Query: 181 IL 182
           ++
Sbjct: 153 VI 154

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 62.0 bits (152), Expect = 4e-12
 Identities = 19/91 (20%), Positives = 29/91 (31%), Gaps = 26/91 (28%)

Query: 70  LLLQ----VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLG 122
           +LL     VN     G  PL  A    H   V+ L+E     +D  I             
Sbjct: 87  MLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE---SGADPTI------------- 130

Query: 123 MKNDEEDTALHEAVQSGSLDVVKILL--GAD 151
            + D    ++  AV  G   V +++      
Sbjct: 131 -ETDSGYNSMDLAVALGYRSVQQVIESHLLK 160

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 38.5 bits (91), Expect = 6e-04
 Identities = 9/43 (20%), Positives = 16/43 (37%)

Query: 160 GSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAA 202
           G+    ++  AA+      A  +++     H    G T L  A
Sbjct: 1   GANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWA 43

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 86.4 bits (215), Expect = 3e-20
 Identities = 38/193 (19%), Positives = 60/193 (31%), Gaps = 64/193 (33%)

Query: 34  KNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ----VNAK---GDAPLHVAA 86
             T LH    A     ++           I+E    LLL+       +   G  P  +AA
Sbjct: 39  GWTPLH---NAVQMSRED-----------IVE----LLLRHGADPVLRKKNGATPFLLAA 80

Query: 87  RYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKI 146
             G   +++  +    + +D                  +    TA  EA   G +  +K 
Sbjct: 81  IAGSVKLLKLFLS---KGADVNE--------------CDFYGFTAFMEAAVYGKVKALKF 123

Query: 147 LL--GADP-------AFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPN--- 194
           L   GA+                 G T L  AA + H E+  +IL         G +   
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV-LKILL-----DEMGADVNA 177

Query: 195 ----GKTALHAAV 203
               G+ AL  A+
Sbjct: 178 CDNMGRNALIHAL 190

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 82.5 bits (205), Expect = 1e-18
 Identities = 31/132 (23%), Positives = 48/132 (36%), Gaps = 23/132 (17%)

Query: 75  NAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHE 134
             + +  L  A +     +V+ L           +E G     +     + +   T LH 
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQL-----------LEGGANVNFQ-----EEEGGWTPLHN 45

Query: 135 AVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEIL-QKCPSPAHE 191
           AVQ    D+V++LL  GAD   P     +G TP  LAA     ++  ++   K       
Sbjct: 46  AVQMSREDIVELLLRHGAD---PVLRKKNGATPFLLAAIAGSVKL-LKLFLSKGADVNEC 101

Query: 192 GPNGKTALHAAV 203
              G TA   A 
Sbjct: 102 DFYGFTAFMEAA 113

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 77.5 bits (192), Expect = 6e-17
 Identities = 36/145 (24%), Positives = 52/145 (35%), Gaps = 38/145 (26%)

Query: 73  QVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTAL 132
           ++   G   L  AA  GH  V++ L++          E G +  A       ++    AL
Sbjct: 143 RLRKGGATALMDAAEKGHVEVLKILLD----------EMGADVNA------CDNMGRNAL 186

Query: 133 HEAVQSGS----LDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCP 186
             A+ S        +  +LL  GAD          G+TPL LA  + H  +  + L    
Sbjct: 187 IHALLSSDDSDVEAITHLLLDHGADV---NVRGERGKTPLILAVEKKHLGL-VQRLL--- 239

Query: 187 SPAHEGPN-------GKTALHAAVC 204
               E          GKTAL  AV 
Sbjct: 240 --EQEHIEINDTDSDGKTALLLAVE 262

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 72.5 bits (179), Expect = 3e-15
 Identities = 39/198 (19%), Positives = 70/198 (35%), Gaps = 54/198 (27%)

Query: 5   LYEAAAKGEIE----------PFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGES 54
             EAA  G+++            N     ++    +     T L     A+   + E   
Sbjct: 109 FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM---DAAEKGHVE--- 162

Query: 55  VSTKFVERIIEMCPSLLLQ----VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQ 107
                   ++++   LL +    VNA    G   L  A      + VEA+  +       
Sbjct: 163 --------VLKI---LLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLL------ 205

Query: 108 EIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILL---GADPAFPYSANGSGET 164
            ++ G +      + ++ +   T L  AV+   L +V+ LL     +       +  G+T
Sbjct: 206 -LDHGAD------VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN---DTDSDGKT 255

Query: 165 PLYLAAARAHKEISAEIL 182
            L LA     K+I AE+L
Sbjct: 256 ALLLAVELKLKKI-AELL 272

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 61.3 bits (150), Expect = 3e-11
 Identities = 37/160 (23%), Positives = 59/160 (36%), Gaps = 44/160 (27%)

Query: 5   LYEAAAKGEIEPFNQLAIDRQLGSLVTHKKN---TVLHVNIIASYTQNKEGESVSTKFVE 61
           L +AA KG +E    L +D ++G+ V    N     L     A  + +          VE
Sbjct: 152 LMDAAEKGHVEVLKIL-LD-EMGADVNACDNMGRNALI---HALLSSDDSD-------VE 199

Query: 62  RIIEMCPSLLLQ----VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVE 114
            I      LLL     VN +   G  PL +A    H  +V+ L+E  ++  +        
Sbjct: 200 AITH----LLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE--QEHIEIND----- 248

Query: 115 STARHMLGMKNDEEDTALHEAVQSGSLDVVKILL--GADP 152
                     + +  TAL  AV+     + ++L   GA  
Sbjct: 249 ---------TDSDGKTALLLAVELKLKKIAELLCKRGAST 279

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 84.0 bits (209), Expect = 3e-20
 Identities = 34/135 (25%), Positives = 49/135 (36%), Gaps = 25/135 (18%)

Query: 74  VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDT 130
           VN     G  PL  A+ +G    V  L+E     +D  I                 E ++
Sbjct: 29  VNKPDERGFTPLIWASAFGEIETVRFLLE---WGADPHI--------------LAKERES 71

Query: 131 ALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSP 188
           AL  A   G  D+V +LL    D       + +G TPL  A    H +    +L +    
Sbjct: 72  ALSLASTGGYTDIVGLLLERDVDIN---IYDWNGGTPLLYAVRGNHVKCVEALLARGADL 128

Query: 189 AHEGPNGKTALHAAV 203
             E  +G T +  AV
Sbjct: 129 TTEADSGYTPMDLAV 143

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 80.2 bits (199), Expect = 8e-19
 Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 23/126 (18%)

Query: 81  PLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGS 140
            +H  A  G    ++  +    +  +   +              ++   T L  A   G 
Sbjct: 5   SIHQLAAQGELDQLKEHLR---KGDNLVNK-------------PDERGFTPLIWASAFGE 48

Query: 141 LDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEIL-QKCPSPAHEGPNGKT 197
           ++ V+ LL  GAD   P+      E+ L LA+   + +I   +L ++         NG T
Sbjct: 49  IETVRFLLEWGAD---PHILAKERESALSLASTGGYTDI-VGLLLERDVDINIYDWNGGT 104

Query: 198 ALHAAV 203
            L  AV
Sbjct: 105 PLLYAV 110

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 79.8 bits (198), Expect = 1e-18
 Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 30/122 (24%)

Query: 70  LLLQ----VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLG 122
            LL+     +      ++ L +A+  G+  +V  L+E   ++ D  I             
Sbjct: 54  FLLEWGADPHILAKERESALSLASTGGYTDIVGLLLE---RDVDINI------------- 97

Query: 123 MKNDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAE 180
             +    T L  AV+   +  V+ LL  GAD     +   SG TP+ LA A  ++++  +
Sbjct: 98  -YDWNGGTPLLYAVRGNHVKCVEALLARGADLT---TEADSGYTPMDLAVALGYRKV-QQ 152

Query: 181 IL 182
           ++
Sbjct: 153 VI 154

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 67.8 bits (167), Expect = 3e-14
 Identities = 23/105 (21%), Positives = 35/105 (33%), Gaps = 29/105 (27%)

Query: 70  LLLQ----VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLG 122
           LLL+    +N     G  PL  A R  H   VEAL+    + +D                
Sbjct: 87  LLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLA---RGADLTT------------- 130

Query: 123 MKNDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETP 165
            + D   T +  AV  G   V +++          + +N     P
Sbjct: 131 -EADSGYTPMDLAVALGYRKVQQVIENHILK---LFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 62.4 bits (153), Expect = 3e-12
 Identities = 18/73 (24%), Positives = 28/73 (38%)

Query: 130 TALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPA 189
            ++H+    G LD +K  L          +  G TPL  A+A    E    +L+    P 
Sbjct: 4   LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH 63

Query: 190 HEGPNGKTALHAA 202
                 ++AL  A
Sbjct: 64  ILAKERESALSLA 76

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 82.4 bits (205), Expect = 4e-20
 Identities = 28/132 (21%), Positives = 45/132 (34%), Gaps = 24/132 (18%)

Query: 74  VNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALH 133
           + +  D     A + G    V+  +    +  D                   +     LH
Sbjct: 3   LGSMCDKEFMWALKNGDLDEVKDYVA---KGEDVNR--------------TLEGGRKPLH 45

Query: 134 EAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEIL-QKCPSPAH 190
            A   G L++++ LL  GAD     + +    TPL  A    H     ++L  K      
Sbjct: 46  YAADCGQLEILEFLLLKGADIN---APDKHHITPLLSAVYEGHVSC-VKLLLSKGADKTV 101

Query: 191 EGPNGKTALHAA 202
           +GP+G TA  A 
Sbjct: 102 KGPDGLTAFEAT 113

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 80.1 bits (199), Expect = 2e-19
 Identities = 28/109 (25%), Positives = 38/109 (34%), Gaps = 25/109 (22%)

Query: 74  VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDT 130
           VN     G  PLH AA  G   ++E L+    + +D                  +    T
Sbjct: 33  VNRTLEGGRKPLHYAADCGQLEILEFLLL---KGADINA--------------PDKHHIT 75

Query: 131 ALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEI 177
            L  AV  G +  VK+LL  GAD          G T       +A K +
Sbjct: 76  PLLSAVYEGHVSCVKLLLSKGADK---TVKGPDGLTAFEATDNQAIKAL 121

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 58.9 bits (144), Expect = 2e-11
 Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 5/77 (6%)

Query: 129 DTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCP 186
           D     A+++G LD VK  +  G D          G  PL+ AA     EI   +L K  
Sbjct: 8   DKEFMWALKNGDLDEVKDYVAKGEDV---NRTLEGGRKPLHYAADCGQLEILEFLLLKGA 64

Query: 187 SPAHEGPNGKTALHAAV 203
                  +  T L +AV
Sbjct: 65  DINAPDKHHITPLLSAV 81

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 51.2 bits (124), Expect = 1e-08
 Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 20/75 (26%)

Query: 74  VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDT 130
           +NA       PL  A   GH + V+ L+    + +D+ +              K  +  T
Sbjct: 66  INAPDKHHITPLLSAVYEGHVSCVKLLLS---KGADKTV--------------KGPDGLT 108

Query: 131 ALHEAVQSGSLDVVK 145
           A           +++
Sbjct: 109 AFEATDNQAIKALLQ 123

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 82.5 bits (205), Expect = 5e-20
 Identities = 34/125 (27%), Positives = 52/125 (41%), Gaps = 32/125 (25%)

Query: 70  LLLQ----VNAK---GDAPLHVAARYGHAAVVEALIEI-AKQESDQEIESGVESTARHML 121
            LLQ     N K   G  PLH A  +GH  VVE L++  A   +                
Sbjct: 28  YLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT---------------- 71

Query: 122 GMKNDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISA 179
                + D+ LH+A ++G +D+VK+LL  GA      + N  G  P+      + K +  
Sbjct: 72  --TGYQNDSPLHDAAKNGHVDIVKLLLSYGASR---NAVNIFGLRPVDYTDDESMKSL-L 125

Query: 180 EILQK 184
            + +K
Sbjct: 126 LLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 82.1 bits (204), Expect = 7e-20
 Identities = 33/131 (25%), Positives = 51/131 (38%), Gaps = 24/131 (18%)

Query: 75  NAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHE 134
           N +G+  LH+A+  G    VE L++     SD  +              K+    T LHE
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQ---NGSDPNV--------------KDHAGWTPLHE 49

Query: 135 AVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEIL-QKCPSPAHE 191
           A   G L VV++LL   A      +     ++PL+ AA   H +I  ++L     S    
Sbjct: 50  ACNHGHLKVVELLLQHKAL---VNTTGYQNDSPLHDAAKNGHVDI-VKLLLSYGASRNAV 105

Query: 192 GPNGKTALHAA 202
              G   +   
Sbjct: 106 NIFGLRPVDYT 116

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 61.7 bits (151), Expect = 3e-12
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 5/82 (6%)

Query: 124 KNDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEI 181
            N   +T LH A   G +  V+ LL  G+D   P   + +G TPL+ A    H ++   +
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSD---PNVKDHAGWTPLHEACNHGHLKVVELL 62

Query: 182 LQKCPSPAHEGPNGKTALHAAV 203
           LQ        G    + LH A 
Sbjct: 63  LQHKALVNTTGYQNDSPLHDAA 84

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 83.2 bits (207), Expect = 5e-20
 Identities = 35/138 (25%), Positives = 50/138 (36%), Gaps = 33/138 (23%)

Query: 74  VNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALH 133
            N++ D  L  AA+ G    V+ L  +            V              + T LH
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKLCTVQ----------SVNCRD------IEGRQSTPLH 47

Query: 134 EAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAH- 190
            A     + VV+ LL  GAD    ++ +  G  PL+ A +  H E+ AE+L K     H 
Sbjct: 48  FAAGYNRVSVVEYLLQHGAD---VHAKDKGGLVPLHNACSYGHYEV-AELLVK-----HG 98

Query: 191 -----EGPNGKTALHAAV 203
                      T LH A 
Sbjct: 99  AVVNVADLWKFTPLHEAA 116

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 77.0 bits (191), Expect = 1e-17
 Identities = 41/187 (21%), Positives = 65/187 (34%), Gaps = 50/187 (26%)

Query: 27  GSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ-----VNAK---G 78
           G++   + +  L     A+   + E            ++     L               
Sbjct: 1   GAMGNSEADRQLL---EAAKAGDVE-----------TVK----KLCTVQSVNCRDIEGRQ 42

Query: 79  DAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQS 138
             PLH AA Y   +VVE L++            G +  A      K+      LH A   
Sbjct: 43  STPLHFAAGYNRVSVVEYLLQ-----------HGADVHA------KDKGGLVPLHNACSY 85

Query: 139 GSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEIL-QKCPSPAHEGPNG 195
           G  +V ++L+  GA       A+    TPL+ AAA+   EI  ++L Q    P  +  +G
Sbjct: 86  GHYEVAELLVKHGAVV---NVADLWKFTPLHEAAAKGKYEI-CKLLLQHGADPTKKNRDG 141

Query: 196 KTALHAA 202
            T L   
Sbjct: 142 NTPLDLV 148

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 72.8 bits (180), Expect = 3e-16
 Identities = 44/159 (27%), Positives = 62/159 (38%), Gaps = 49/159 (30%)

Query: 33  KKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ----VNAK---GDAPLHVA 85
           +++T LH    A+                 ++E     LLQ    V+AK   G  PLH A
Sbjct: 41  RQSTPLH---FAAGYNRVS-----------VVE----YLLQHGADVHAKDKGGLVPLHNA 82

Query: 86  ARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVK 145
             YGH  V E L+   K  +   +               +  + T LHEA   G  ++ K
Sbjct: 83  CSYGHYEVAELLV---KHGAVVNV--------------ADLWKFTPLHEAAAKGKYEICK 125

Query: 146 ILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEIL 182
           +LL  GAD   P   N  G TPL L       +I  ++L
Sbjct: 126 LLLQHGAD---PTKKNRDGNTPLDL-VKDGDTDI-QDLL 159

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 60.9 bits (149), Expect = 8e-12
 Identities = 26/94 (27%), Positives = 34/94 (36%), Gaps = 9/94 (9%)

Query: 123 MKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEIL 182
           M N E D  L EA ++G ++ VK L            G   TPL+ AA      +  E L
Sbjct: 3   MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV-VEYL 61

Query: 183 QKCPSPAHEG-PNGKTALHAAVCSRSCAASRCHK 215
            +  +  H     G   LH        A S  H 
Sbjct: 62  LQHGADVHAKDKGGLVPLH-------NACSYGHY 88

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 82.5 bits (205), Expect = 1e-19
 Identities = 31/132 (23%), Positives = 48/132 (36%), Gaps = 24/132 (18%)

Query: 74  VNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALH 133
           V ++ + P   AAR      +  L+E        ++++             ++   TAL 
Sbjct: 40  VVSEYETPWWTAARKADEQALSQLLEDR------DVDA------------VDENGRTALL 81

Query: 134 EAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEIL-QKCPSPAH 190
                GS   V++L   GAD          G T L++AA     E+  E L +       
Sbjct: 82  FVAGLGSDKCVRLLAEAGADLDHRDMRG--GLTALHMAAGYVRPEV-VEALVELGADIEV 138

Query: 191 EGPNGKTALHAA 202
           E   G TAL  A
Sbjct: 139 EDERGLTALELA 150

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 77.9 bits (193), Expect = 8e-18
 Identities = 22/151 (14%), Positives = 38/151 (25%), Gaps = 44/151 (29%)

Query: 73  QVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTAL 132
           +   +G     +  + GH+        I             +            E +T  
Sbjct: 9   RTAGEGAMEYLIEWKDGHSPSWVPSSYI-----------AAD---------VVSEYETPW 48

Query: 133 HEAVQSGSLDVVKILL-GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAH- 190
             A +      +  LL   D     + + +G T L   A     +    +L +       
Sbjct: 49  WTAARKADEQALSQLLEDRD---VDAVDENGRTALLFVAGLGSDKC-VRLLAE-----AG 99

Query: 191 ------EGPNGKTALHAAVCSRSCAASRCHK 215
                 +   G TALH        AA     
Sbjct: 100 ADLDHRDMRGGLTALH-------MAAGYVRP 123

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 77.2 bits (191), Expect = 1e-17
 Identities = 34/188 (18%), Positives = 51/188 (27%), Gaps = 53/188 (28%)

Query: 5   LYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERII 64
                  G    +   +      + V  +  T       A+   +++            +
Sbjct: 18  YLIEWKDGHSPSW-VPSSYI--AADVVSEYETPWW---TAARKADEQ-----------AL 60

Query: 65  EMCPSLLLQ---VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTAR 118
                 LL+   V+A    G   L   A  G    V  L E           +G +   R
Sbjct: 61  S----QLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAE-----------AGADLDHR 105

Query: 119 HMLGMKNDEED--TALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAH 174
                  D     TALH A      +VV+ L+  GAD       +  G T L LA     
Sbjct: 106 -------DMRGGLTALHMAAGYVRPEVVEALVELGADIE---VEDERGLTALELAREILK 155

Query: 175 KEISAEIL 182
                   
Sbjct: 156 TTP-KGNP 162

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 54.8 bits (133), Expect = 2e-09
 Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 23/84 (27%)

Query: 74  VNAK----GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEED 129
           ++ +    G   LH+AA Y    VVEAL+E            G +         +++   
Sbjct: 102 LDHRDMRGGLTALHMAAGYVRPEVVEALVE-----------LGADIEV------EDERGL 144

Query: 130 TALHEAVQSGSLDVVKILL--GAD 151
           TAL  A +          +  G  
Sbjct: 145 TALELAREILKTTPKGNPMQFGRR 168

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 86.1 bits (214), Expect = 1e-19
 Identities = 17/178 (9%), Positives = 46/178 (25%), Gaps = 36/178 (20%)

Query: 35  NTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ----VNAK---GDAPLHVAAR 87
           N+ LH    A     ++           +        ++    VN +      PL+++ R
Sbjct: 212 NSHLH---WAILINWED-----------VAM----RFVEMGIDVNMEDNEHTVPLYLSVR 253

Query: 88  YGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKIL 147
                + + L++       Q       +T               +  A      +V+++L
Sbjct: 254 AAMVLLTKELLQKTDVFLIQACPYHNGTTVLP----DRVVWLDFVPAAADPSKQEVLQLL 309

Query: 148 L--GADPAFPYSANGSGETPLYLAAARAHKEISAEIL-QKCPSPAHEGPNGKTALHAA 202
                +      +  +G         +A   +   +             +   +   +
Sbjct: 310 QEKLDEVV---RSLNTGAGGAVKRKKKAAPAV-KRMKLAPSAPVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 78.4 bits (194), Expect = 5e-17
 Identities = 30/135 (22%), Positives = 43/135 (31%), Gaps = 33/135 (24%)

Query: 74  VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDT 130
                      +HVAAR G    V  LIE           +GV  T       +N    T
Sbjct: 13  RIKSDDENMEKIHVAARKGQTDEVRRLIE-----------TGVSPTI------QNRFGCT 55

Query: 131 ALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSP 188
           ALH A + G +D  K L   G        +   G+ P++LA      ++    L +    
Sbjct: 56  ALHLACKFGCVDTAKYLASVGEVH-----SLWHGQKPIHLAVMANKTDL-VVALVE---- 105

Query: 189 AHEGPNGKTALHAAV 203
                 G+       
Sbjct: 106 -GAKERGQMPESLLN 119

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 76.1 bits (188), Expect = 4e-16
 Identities = 26/185 (14%), Positives = 56/185 (30%), Gaps = 43/185 (23%)

Query: 35  NTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLL-LQVNAK---GDAPLHVAARYGH 90
            T L     A   +N+E        ++ +++  PS   L+++     G++ LH A     
Sbjct: 174 ETPLM---RAMEFRNRE-------ALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINW 223

Query: 91  AAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILL-- 148
             V    +E            G++         +++E    L+ +V++  + + K LL  
Sbjct: 224 EDVAMRFVE-----------MGIDVNM------EDNEHTVPLYLSVRAAMVLLTKELLQK 266

Query: 149 GADP----------AFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTA 198
                                      +  AA  + +E+   + +K          G   
Sbjct: 267 TDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGG 326

Query: 199 LHAAV 203
                
Sbjct: 327 AVKRK 331

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 74.1 bits (183), Expect = 2e-15
 Identities = 21/138 (15%), Positives = 49/138 (35%), Gaps = 29/138 (21%)

Query: 75  NAKGDAPLHVAARYG--HAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTAL 132
           + KG   LH     G  +  +++ L++            G   TA      K+  ++T L
Sbjct: 135 HCKGQTALHWCVGLGPEYLEMIKILVQ-----------LGASPTA------KDKADETPL 177

Query: 133 HEAVQSGSLDVVKILL-------GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKC 185
             A++  + + + +++                AN  G + L+ A     ++++   ++  
Sbjct: 178 MRAMEFRNREALDLMMDTVPSKSSLRLD---YANKQGNSHLHWAILINWEDVAMRFVEMG 234

Query: 186 PSPAHEGPNGKTALHAAV 203
                E       L+ +V
Sbjct: 235 IDVNMEDNEHTVPLYLSV 252

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 81.7 bits (203), Expect = 2e-19
 Identities = 35/134 (26%), Positives = 52/134 (38%), Gaps = 25/134 (18%)

Query: 74  VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDT 130
           +N     G +PLH A R G +AVVE LI             G            N  +DT
Sbjct: 32  LNQGDDHGFSPLHWACREGRSAVVEMLIM-----------RGARINV------MNRGDDT 74

Query: 131 ALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSP 188
            LH A   G  D+V+ LL   AD     + N  G  PL+ A      +++ +++      
Sbjct: 75  PLHLAASHGHRDIVQKLLQYKADIN---AVNEHGNVPLHYACFWGQDQVAEDLVANGALV 131

Query: 189 AHEGPNGKTALHAA 202
           +     G+  +  A
Sbjct: 132 SICNKYGEMPVDKA 145

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 79.4 bits (197), Expect = 2e-18
 Identities = 34/158 (21%), Positives = 55/158 (34%), Gaps = 48/158 (30%)

Query: 36  TVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ----VNAK---GDAPLHVAARY 88
           + LH    A                  ++E    +L+     +N      D PLH+AA +
Sbjct: 41  SPLH---WACREGRSA-----------VVE----MLIMRGARINVMNRGDDTPLHLAASH 82

Query: 89  GHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILL 148
           GH  +V+ L++              +  A       N+  +  LH A   G   V + L+
Sbjct: 83  GHRDIVQKLLQ-----------YKADINA------VNEHGNVPLHYACFWGQDQVAEDLV 125

Query: 149 --GADPAFPYSANGSGETPLYLAAARAHKEISAEILQK 184
             GA        N  GE P+  A A   + +  E  +K
Sbjct: 126 ANGALV---SICNKYGEMPVDKAKAPLRELL-RERAEK 159

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 78.2 bits (194), Expect = 5e-18
 Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 23/128 (17%)

Query: 78  GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQ 137
               +    R G+A  V   ++    E+D  +               +D   + LH A +
Sbjct: 5   FMDDIFTQCREGNAVAVRLWLD--NTEND--LNQ------------GDDHGFSPLHWACR 48

Query: 138 SGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEIL-QKCPSPAHEGPN 194
            G   VV++L+  GA        N   +TPL+LAA+  H++I  + L Q          +
Sbjct: 49  EGRSAVVEMLIMRGAR---INVMNRGDDTPLHLAASHGHRDI-VQKLLQYKADINAVNEH 104

Query: 195 GKTALHAA 202
           G   LH A
Sbjct: 105 GNVPLHYA 112

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 59.8 bits (146), Expect = 3e-11
 Identities = 19/114 (16%), Positives = 32/114 (28%), Gaps = 35/114 (30%)

Query: 70  LLLQ----VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLG 122
            LLQ    +NA    G+ PLH A  +G   V E L+            +G   +      
Sbjct: 90  KLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVA-----------NGALVSI----- 133

Query: 123 MKNDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAH 174
             N   +  + +A       + +     G +             P      +  
Sbjct: 134 -CNKYGEMPVDKAKAPLRELLRERAEKMGQNL---------NRIPYKDTFWKGT 177

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 55.5 bits (135), Expect = 1e-09
 Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 14/85 (16%)

Query: 125 NDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQK 184
           + E    +    + G+   V++ L          +  G +PL+ A       +  E+L  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAV-VEMLIM 60

Query: 185 CPSPAHEGPN-------GKTALHAA 202
                  G           T LH A
Sbjct: 61  ------RGARINVMNRGDDTPLHLA 79

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 38.2 bits (90), Expect = 9e-04
 Identities = 11/72 (15%), Positives = 20/72 (27%), Gaps = 25/72 (34%)

Query: 35  NTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ----VNAK---GDAPLHVAAR 87
           N  LH    A +    +           + E     L+     V+     G+ P+  A  
Sbjct: 106 NVPLH---YACFWGQDQ-----------VAE----DLVANGALVSICNKYGEMPVDKAKA 147

Query: 88  YGHAAVVEALIE 99
                + E   +
Sbjct: 148 PLRELLRERAEK 159

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 81.7 bits (203), Expect = 4e-19
 Identities = 28/139 (20%), Positives = 47/139 (33%), Gaps = 23/139 (16%)

Query: 74  VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDT 130
           V+     G+ PL++A       + +AL           I+ G +         +N   D+
Sbjct: 32  VDEVDTEGNTPLNIAVHNNDIEIAKAL-----------IDRGADINL------QNSISDS 74

Query: 131 ALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEIL--QKCPSP 188
               A   G  +++  +L          N  G   L  AA + H +   ++L        
Sbjct: 75  PYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDN-VKLLLEDGREDI 133

Query: 189 AHEGPNGKTALHAAVCSRS 207
             +   G TAL  AV  R 
Sbjct: 134 DFQNDFGYTALIEAVGLRE 152

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 81.0 bits (201), Expect = 7e-19
 Identities = 34/193 (17%), Positives = 65/193 (33%), Gaps = 53/193 (27%)

Query: 35  NTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ----VNAK---GDAPLHVAAR 87
           NT L+   IA +  + E           I +     L+     +N +    D+P   A  
Sbjct: 40  NTPLN---IAVHNNDIE-----------IAK----ALIDRGADINLQNSISDSPYLYAGA 81

Query: 88  YGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKIL 147
            G   ++  +++ A      ++               N     AL  A + G +D VK+L
Sbjct: 82  QGRTEILAYMLKHA----TPDLNK------------HNRYGGNALIPAAEKGHIDNVKLL 125

Query: 148 LGADPAFPYSANGSGETPLYLAAARA-----HKEISAEILQKCPSPAHEGPNGKTALHAA 202
           L          N  G T L  A         +++I   +++     + +  +G+TA+   
Sbjct: 126 LEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMD-- 183

Query: 203 VCSRSCAASRCHK 215
                 A  + + 
Sbjct: 184 -----YANQKGYT 191

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 71.7 bits (177), Expect = 2e-15
 Identities = 34/119 (28%), Positives = 50/119 (42%), Gaps = 30/119 (25%)

Query: 74  VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDT 130
           +N     G   L  AA  GH   V+ L+E       ++I+             +ND   T
Sbjct: 99  LNKHNRYGGNALIPAAEKGHIDNVKLLLED----GREDIDF------------QNDFGYT 142

Query: 131 ALHEAV-----QSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEIL 182
           AL EAV          D+VK+L+  GAD       + SG T +  A  + + EI ++IL
Sbjct: 143 ALIEAVGLREGNQLYQDIVKLLMENGADQ---SIKDNSGRTAMDYANQKGYTEI-SKIL 197

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 60.9 bits (149), Expect = 1e-11
 Identities = 19/103 (18%), Positives = 28/103 (27%), Gaps = 28/103 (27%)

Query: 123 MKNDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAE 180
           MK  E    L  A Q  +  V +IL             +  G TPL +A      EI A+
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQ---VDEVDTEGNTPLNIAVHNNDIEI-AK 56

Query: 181 IL--------QKCPSPAHEGPNGKTALHAAVCSRSCAASRCHK 215
            L         +            +           A ++   
Sbjct: 57  ALIDRGADINLQ-------NSISDSPYL-------YAGAQGRT 85

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 46.3 bits (111), Expect = 2e-06
 Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 25/83 (30%)

Query: 74  VNAK---GDAPLHVAARY-----GHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKN 125
           ++ +   G   L  A         +  +V+ L+E     +DQ I              K+
Sbjct: 133 IDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME---NGADQSI--------------KD 175

Query: 126 DEEDTALHEAVQSGSLDVVKILL 148
           +   TA+  A Q G  ++ KIL 
Sbjct: 176 NSGRTAMDYANQKGYTEISKILA 198

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 82.1 bits (204), Expect = 7e-19
 Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 27/135 (20%)

Query: 74  VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDT 130
           VN +   G  P+  A  Y H  +V+ L+    + SD  I              +++EE+ 
Sbjct: 104 VNCQDDGGWTPMIWATEYKHVDLVKLLLS---KGSDINI--------------RDNEENI 146

Query: 131 ALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEIL-QKCPS 187
            LH A  SG +D+ +ILL    D    ++ N  G++PL++AA     +    +   +   
Sbjct: 147 CLHWAAFSGCVDIAEILLAAKCD---LHAVNIHGDSPLHIAARENRYDC-VVLFLSRDSD 202

Query: 188 PAHEGPNGKTALHAA 202
              +   G+T L  A
Sbjct: 203 VTLKNKEGETPLQCA 217

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 81.7 bits (203), Expect = 9e-19
 Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 28/136 (20%)

Query: 74  VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDT 130
              +     +PLH AA  GH  +   L++           +G            ++++ T
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQ-----------AGANIDT------CSEDQRT 46

Query: 131 ALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEIL--QKCP 186
            L EA ++  L+ VK L+  GA        +  G T L+LAA + H E+  + L      
Sbjct: 47  PLMEAAENNHLEAVKYLIKAGAL---VDPKDAEGSTCLHLAAKKGHYEV-VQYLLSNGQM 102

Query: 187 SPAHEGPNGKTALHAA 202
               +   G T +  A
Sbjct: 103 DVNCQDDGGWTPMIWA 118

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 80.9 bits (201), Expect = 1e-18
 Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 26/136 (19%)

Query: 74  VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDT 130
           V+ K   G   LH+AA+ GH  VV+ L+   + + +                 ++D   T
Sbjct: 70  VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNC----------------QDDGGWT 113

Query: 131 ALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEIL-QKCPS 187
            +  A +   +D+VK+LL  G+D       +      L+ AA     +I AEIL      
Sbjct: 114 PMIWATEYKHVDLVKLLLSKGSDI---NIRDNEENICLHWAAFSGCVDI-AEILLAAKCD 169

Query: 188 PAHEGPNGKTALHAAV 203
                 +G + LH A 
Sbjct: 170 LHAVNIHGDSPLHIAA 185

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 80.5 bits (200), Expect = 2e-18
 Identities = 36/178 (20%), Positives = 58/178 (32%), Gaps = 44/178 (24%)

Query: 34  KNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ----VNAK---GDAPLHVAA 86
           K + LH    A+   + +           I      +L+Q    ++        PL  AA
Sbjct: 11  KRSPLH---AAAEAGHVD-----------ICH----MLVQAGANIDTCSEDQRTPLMEAA 52

Query: 87  RYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKI 146
              H   V+ LI+     +  +               K+ E  T LH A + G  +VV+ 
Sbjct: 53  ENNHLEAVKYLIK---AGALVDP--------------KDAEGSTCLHLAAKKGHYEVVQY 95

Query: 147 LLGADPAFPYSANGSGETPLYLAAARAHKEISAEIL-QKCPSPAHEGPNGKTALHAAV 203
           LL          +  G TP+  A    H ++  ++L  K              LH A 
Sbjct: 96  LLSNGQMDVNCQDDGGWTPMIWATEYKHVDL-VKLLLSKGSDINIRDNEENICLHWAA 152

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 76.7 bits (190), Expect = 5e-17
 Identities = 31/156 (19%), Positives = 52/156 (33%), Gaps = 48/156 (30%)

Query: 36  TVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ----VNAK---GDAPLHVAARY 88
           T +     A+  ++ +           +++    LLL     +N +    +  LH AA  
Sbjct: 113 TPMI---WATEYKHVD-----------LVK----LLLSKGSDINIRDNEENICLHWAAFS 154

Query: 89  GHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILL 148
           G   + E L+     + D                  N   D+ LH A +    D V + L
Sbjct: 155 GCVDIAEILLA---AKCDLHA--------------VNIHGDSPLHIAARENRYDCVVLFL 197

Query: 149 --GADPAFPYSANGSGETPLYLAAARAHKEISAEIL 182
              +D       N  GETPL  A+  +     A  +
Sbjct: 198 SRDSDV---TLKNKEGETPLQCASLNSQVWS-ALQM 229

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 58.6 bits (143), Expect = 1e-10
 Identities = 27/128 (21%), Positives = 42/128 (32%), Gaps = 44/128 (34%)

Query: 35  NTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ----VNAK---GDAPLHVAAR 87
           N  LH    A+++   +           I E    +LL     ++A    GD+PLH+AAR
Sbjct: 145 NICLH---WAAFSGCVD-----------IAE----ILLAAKCDLHAVNIHGDSPLHIAAR 186

Query: 88  YGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKIL 147
                 V   +               + T       KN E +T L  A  +  +     +
Sbjct: 187 ENRYDCVVLFLSR-----------DSDVTL------KNKEGETPLQCASLNSQVWSALQM 229

Query: 148 L--GADPA 153
                D A
Sbjct: 230 SKALQDSA 237

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 81.9 bits (203), Expect = 8e-19
 Identities = 31/132 (23%), Positives = 48/132 (36%), Gaps = 24/132 (18%)

Query: 74  VNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALH 133
           V ++ + P   AAR      +  L+E        ++++             ++   TAL 
Sbjct: 41  VVSEYETPWWTAARKADEQALSQLLEDR------DVDA------------VDENGRTALL 82

Query: 134 EAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEIL-QKCPSPAH 190
                GS   V++L   GAD          G T L++AA     E+  E L +       
Sbjct: 83  FVAGLGSDKCVRLLAEAGADLDHRDMRG--GLTALHMAAGYVRPEV-VEALVELGADIEV 139

Query: 191 EGPNGKTALHAA 202
           E   G TAL  A
Sbjct: 140 EDERGLTALELA 151

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 76.9 bits (190), Expect = 5e-17
 Identities = 23/146 (15%), Positives = 37/146 (25%), Gaps = 34/146 (23%)

Query: 73  QVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTAL 132
           +   +G     +  + GH+        IA                         E +T  
Sbjct: 10  RTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD--------------------VVSEYETPW 49

Query: 133 HEAVQSGSLDVVKILL-GADPAFPYSANGSGETPLYLAAARAHKEISAEIL--QKCPSPA 189
             A +      +  LL   D     + + +G T L   A     +    +L         
Sbjct: 50  WTAARKADEQALSQLLEDRD---VDAVDENGRTALLFVAGLGSDKC-VRLLAEAGADLDH 105

Query: 190 HEGPNGKTALHAAVCSRSCAASRCHK 215
            +   G TALH        AA     
Sbjct: 106 RDMRGGLTALH-------MAAGYVRP 124

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 61.1 bits (149), Expect = 2e-11
 Identities = 18/140 (12%), Positives = 34/140 (24%), Gaps = 48/140 (34%)

Query: 74  VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDT 130
           +  +   G   L +A            ++                  R        E+  
Sbjct: 137 IEVEDERGLTALELAREILKTTPKGNPMQFG---------------RR-----IGLEKVI 176

Query: 131 ALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEIS-------AEILQ 183
            + E       +V +I+            G G+   YL   +   +         AE + 
Sbjct: 177 NVLEGQVFEYAEVDEIVE---------KRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVA 227

Query: 184 KCPSPAHEGPNGKTALHAAV 203
           K         + +  L  AV
Sbjct: 228 K---------DYEDGLEYAV 238

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 60.3 bits (147), Expect = 5e-11
 Identities = 16/89 (17%), Positives = 25/89 (28%), Gaps = 9/89 (10%)

Query: 116 TARHMLGMKNDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARA 173
             + +      E         + G            AD           ETP + AA +A
Sbjct: 3   VNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD------VVSEYETPWWTAARKA 56

Query: 174 HKEISAEILQKCPSPAHEGPNGKTALHAA 202
            ++     L +         NG+TAL   
Sbjct: 57  DEQA-LSQLLEDRDVDAVDENGRTALLFV 84

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 80.1 bits (199), Expect = 8e-19
 Identities = 45/179 (25%), Positives = 69/179 (38%), Gaps = 49/179 (27%)

Query: 35  NTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLL----QVNAK---GDAPLHVAAR 87
              L     A+     +            +     +L+     VNA+   G  PLH+AA 
Sbjct: 15  GKKLL---EAARAGRDD-----------EVR----ILMANGADVNAEDASGWTPLHLAAF 56

Query: 88  YGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKIL 147
            GH  +VE L++     +D                  +    T L  A   G L++V++L
Sbjct: 57  NGHLEIVEVLLK---NGADVNA--------------VDHAGMTPLRLAALFGHLEIVEVL 99

Query: 148 L--GADPAFPYSANGSGETPLYLAAARAHKEISAEIL-QKCPSPAHEGPNGKTALHAAV 203
           L  GAD     + +  G TPL+LAA   H EI  E+L +       +   GKTA   ++
Sbjct: 100 LKNGADV---NANDMEGHTPLHLAAMFGHLEI-VEVLLKNGADVNAQDKFGKTAFDISI 154

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 78.9 bits (196), Expect = 2e-18
 Identities = 38/132 (28%), Positives = 54/132 (40%), Gaps = 24/132 (18%)

Query: 75  NAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHE 134
            +     L  AAR G    V  L+            +G +  A      ++    T LH 
Sbjct: 11  GSDLGKKLLEAARAGRDDEVRILMA-----------NGADVNA------EDASGWTPLHL 53

Query: 135 AVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEIL-QKCPSPAHE 191
           A  +G L++V++LL  GAD     + + +G TPL LAA   H EI  E+L +        
Sbjct: 54  AAFNGHLEIVEVLLKNGAD---VNAVDHAGMTPLRLAALFGHLEI-VEVLLKNGADVNAN 109

Query: 192 GPNGKTALHAAV 203
              G T LH A 
Sbjct: 110 DMEGHTPLHLAA 121

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 76.2 bits (189), Expect = 2e-17
 Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 26/116 (22%)

Query: 74  VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDT 130
           VNA    G  PL +AA +GH  +VE L++     +D                  + E  T
Sbjct: 73  VNAVDHAGMTPLRLAALFGHLEIVEVLLK---NGADVNA--------------NDMEGHT 115

Query: 131 ALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQK 184
            LH A   G L++V++LL  GAD     + +  G+T   ++    ++++ AEILQK
Sbjct: 116 PLHLAAMFGHLEIVEVLLKNGAD---VNAQDKFGKTAFDISIDNGNEDL-AEILQK 167

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 79.4 bits (197), Expect = 1e-18
 Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 31/142 (21%)

Query: 70  LLLQ----VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLG 122
           LL +     +A    G   L V   +G  A+   L++   Q +   +             
Sbjct: 21  LLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLK---QGASPNV------------- 63

Query: 123 MKNDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAE 180
            ++    + +H+A ++G LD +K+L+  GAD       +G+G  P++LA    H  +   
Sbjct: 64  -QDTSGTSPVHDAARTGFLDTLKVLVEHGADV---NVPDGTGALPIHLAVQEGHTAV-VS 118

Query: 181 ILQKCPSPAHEGPNGKTALHAA 202
            L            G T L  A
Sbjct: 119 FLAAESDLHRRDARGLTPLELA 140

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 77.5 bits (192), Expect = 6e-18
 Identities = 32/123 (26%), Positives = 49/123 (39%), Gaps = 29/123 (23%)

Query: 70  LLLQ----VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLG 122
            LL+     N +   G +P+H AAR G    ++ L           +E G +        
Sbjct: 53  ELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVL-----------VEHGADVNV----- 96

Query: 123 MKNDEEDTALHEAVQSGSLDVVKILL-GADPAFPYSANGSGETPLYLAAARAHKEISAEI 181
             +      +H AVQ G   VV  L   +D    +  +  G TPL LA  R  +++  +I
Sbjct: 97  -PDGTGALPIHLAVQEGHTAVVSFLAAESD---LHRRDARGLTPLELALQRGAQDL-VDI 151

Query: 182 LQK 184
           LQ 
Sbjct: 152 LQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 72.4 bits (179), Expect = 4e-16
 Identities = 28/129 (21%), Positives = 40/129 (31%), Gaps = 24/129 (18%)

Query: 77  KGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAV 136
           +    L  AA  G    V  L+              V   A       N    TAL    
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLL----------HRELVHPDA------LNRFGKTALQVM- 43

Query: 137 QSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEIL-QKCPSPAHEGP 193
             GS  +   LL  GA    P   + SG +P++ AA     +   ++L +          
Sbjct: 44  MFGSTAIALELLKQGAS---PNVQDTSGTSPVHDAARTGFLDT-LKVLVEHGADVNVPDG 99

Query: 194 NGKTALHAA 202
            G   +H A
Sbjct: 100 TGALPIHLA 108

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 81.3 bits (202), Expect = 1e-18
 Identities = 26/137 (18%), Positives = 44/137 (32%), Gaps = 26/137 (18%)

Query: 73  QVNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEED 129
            +          +  A +YG       L           +E+G +          + E  
Sbjct: 1   HMTHIDDYSTWDIVKATQYGIYERCREL-----------VEAGYDVRQ------PDKENV 43

Query: 130 TALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEIL-QKCP 186
           T LH A  +  +D+VK  +  GA             TPL+ A  + H  +    L +   
Sbjct: 44  TLLHWAAINNRIDLVKYYISKGAIVD--QLGGDLNSTPLHWATRQGHLSM-VVQLMKYGA 100

Query: 187 SPAHEGPNGKTALHAAV 203
            P+     G + +H A 
Sbjct: 101 DPSLIDGEGCSCIHLAA 117

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 76.3 bits (189), Expect = 8e-17
 Identities = 27/145 (18%), Positives = 53/145 (36%), Gaps = 31/145 (21%)

Query: 70  LLLQ----VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLG 122
            L++     +     G + +H+AA++GH ++V  LI        Q+++            
Sbjct: 94  QLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK-----GQDVD------------ 136

Query: 123 MKNDEEDTALHEAVQSG-SLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISA 179
           M +    T L  A     S+D  ++LL                 T L+ A    +  +  
Sbjct: 137 MMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNL--GDKYHKNTALHWAVLAGNTTV-I 193

Query: 180 EIL-QKCPSPAHEGPNGKTALHAAV 203
            +L +   +   +   G++AL  A 
Sbjct: 194 SLLLEAGANVDAQNIKGESALDLAK 218

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 72.5 bits (179), Expect = 2e-15
 Identities = 34/160 (21%), Positives = 56/160 (35%), Gaps = 48/160 (30%)

Query: 35  NTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ----VNAK---GDAPLHVAAR 87
            + +H   +A+   +             I+      L+     V+     G  PL  AA 
Sbjct: 110 CSCIH---LAAQFGHTS-----------IVA----YLIAKGQDVDMMDQNGMTPLMWAAY 151

Query: 88  YGHAA-VVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKI 146
             H+      L+              V              ++TALH AV +G+  V+ +
Sbjct: 152 RTHSVDPTRLLLT-----------FNVSVNLG-----DKYHKNTALHWAVLAGNTTVISL 195

Query: 147 LL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQK 184
           LL  GA+     + N  GE+ L LA  R +  +    LQ+
Sbjct: 196 LLEAGANV---DAQNIKGESALDLAKQRKNVWM-INHLQE 231

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 55.9 bits (136), Expect = 1e-09
 Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 21/81 (25%)

Query: 74  VNAK----GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEED 129
           VN       +  LH A   G+  V+  L+E     ++ +               +N + +
Sbjct: 169 VNLGDKYHKNTALHWAVLAGNTTVISLLLE---AGANVDA--------------QNIKGE 211

Query: 130 TALHEAVQSGSLDVVKILLGA 150
           +AL  A Q  ++ ++  L  A
Sbjct: 212 SALDLAKQRKNVWMINHLQEA 232

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 40.1 bits (95), Expect = 3e-04
 Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 26/81 (32%)

Query: 34  KNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ----VNAK---GDAPLHVAA 86
           KNT LH    A    N             +I     LLL+    V+A+   G++ L +A 
Sbjct: 177 KNTALH---WAVLAGNTT-----------VIS----LLLEAGANVDAQNIKGESALDLAK 218

Query: 87  RYGHAAVVEALIEI-AKQESD 106
           +  +  ++  L E    +  D
Sbjct: 219 QRKNVWMINHLQEARQAKGYD 239

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 78.2 bits (194), Expect = 2e-18
 Identities = 43/115 (37%), Positives = 61/115 (53%), Gaps = 28/115 (24%)

Query: 74  VNAK---GDAPLHVAARYGHAAVVEALIEI-AKQESDQEIESGVESTARHMLGMKNDEED 129
           VNAK   G  PLH+AAR GH  VV+ L+E  A      ++ +            K+    
Sbjct: 28  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA------DVNA------------KDKNGR 69

Query: 130 TALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEIL 182
           T LH A ++G L+VVK+LL  GAD     + + +G TPL+LAA   H E+  ++L
Sbjct: 70  TPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEV-VKLL 120

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 77.0 bits (191), Expect = 4e-18
 Identities = 46/136 (33%), Positives = 65/136 (47%), Gaps = 40/136 (29%)

Query: 78  GDAPLHVAARYGHAAVVEALIEI-AKQESDQEIESGVESTARHMLGMKNDEEDTALHEAV 136
           G  PLH+AAR GH  VV+ L+E  A      ++ +            K+    T LH A 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGA------DVNA------------KDKNGRTPLHLAA 43

Query: 137 QSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEIL--------QKCP 186
           ++G L+VVK+LL  GAD     + + +G TPL+LAA   H E+  ++L         K  
Sbjct: 44  RNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEV-VKLLLEAGADVNAK-- 97

Query: 187 SPAHEGPNGKTALHAA 202
                  NG+T LH A
Sbjct: 98  -----DKNGRTPLHLA 108

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 57.4 bits (140), Expect = 7e-11
 Identities = 32/83 (38%), Positives = 41/83 (49%), Gaps = 24/83 (28%)

Query: 74  VNAK---GDAPLHVAARYGHAAVVEALIEI-AKQESDQEIESGVESTARHMLGMKNDEED 129
           VNAK   G  PLH+AAR GH  VV+ L+E  A   +                  K+    
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA------------------KDKNGR 102

Query: 130 TALHEAVQSGSLDVVKILL--GA 150
           T LH A ++G L+VVK+LL  GA
Sbjct: 103 TPLHLAARNGHLEVVKLLLEAGA 125

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 80.2 bits (199), Expect = 2e-18
 Identities = 31/135 (22%), Positives = 47/135 (34%), Gaps = 23/135 (17%)

Query: 74  VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDT 130
           +N     G   LH+A       V + LIE           +G           K+     
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIE-----------NGASVRI------KDKFNQI 142

Query: 131 ALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEIL--QKCPSP 188
            LH A   GSL ++++L G   +     +  G TPL+ A A  H +  A +L  +     
Sbjct: 143 PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDA-AVLLVEKYGAEY 201

Query: 189 AHEGPNGKTALHAAV 203
                 G  A   A+
Sbjct: 202 DLVDNKGAKAEDVAL 216

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 79.0 bits (196), Expect = 7e-18
 Identities = 28/138 (20%), Positives = 48/138 (34%), Gaps = 26/138 (18%)

Query: 74  VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDT 130
           +  K   G  PLH +  +    +   L+    +  +  ++              +D   T
Sbjct: 29  LLQKDQDGRIPLHWSVSFQAHEITSFLL---SKMENVNLDD-----------YPDDSGWT 74

Query: 131 ALHEAVQSGSLDVVKILL----GADPAFPYSANGSGETPLYLAAARAHKEISAEIL-QKC 185
             H A   G+L+VVK L       D          G T L+LA  +   E+ ++ L +  
Sbjct: 75  PFHIACSVGNLEVVKSLYDRPLKPD---LNKITNQGVTCLHLAVGKKWFEV-SQFLIENG 130

Query: 186 PSPAHEGPNGKTALHAAV 203
            S   +    +  LH A 
Sbjct: 131 ASVRIKDKFNQIPLHRAA 148

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 76.3 bits (189), Expect = 6e-17
 Identities = 26/135 (19%), Positives = 44/135 (32%), Gaps = 30/135 (22%)

Query: 78  GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQ 137
            + PLH A        V+ L+                         K+ +    LH +V 
Sbjct: 2   SNYPLHQACMENEFFKVQELL----------HSKPSLLLQ------KDQDGRIPLHWSVS 45

Query: 138 SGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPN- 194
             + ++   LL    +       + SG TP ++A +  + E+  + L          P+ 
Sbjct: 46  FQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEV-VKSLYD----RPLKPDL 100

Query: 195 ------GKTALHAAV 203
                 G T LH AV
Sbjct: 101 NKITNQGVTCLHLAV 115

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 75.9 bits (188), Expect = 9e-17
 Identities = 35/183 (19%), Positives = 56/183 (30%), Gaps = 45/183 (24%)

Query: 5   LYEAAAKGEIEPFNQLAIDRQLGSLVTHKKN---TVLHVNIIASYTQNKEGESVSTKFVE 61
            + A + G +E    L  DR L   +    N   T LH   +A   +  E          
Sbjct: 76  FHIACSVGNLEVVKSL-YDRPLKPDLNKITNQGVTCLH---LAVGKKWFE---------- 121

Query: 62  RIIEMCPSLLL----QVNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVE 114
            + +     L+     V  K      PLH AA  G   ++E L      +S         
Sbjct: 122 -VSQ----FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG--LGKSAVNW----- 169

Query: 115 STARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAH 174
                    ++ +  T L  A+  G  D   +L+    A     +  G     +A     
Sbjct: 170 ---------QDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQV 220

Query: 175 KEI 177
           K+ 
Sbjct: 221 KKF 223

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 81.8 bits (203), Expect = 3e-18
 Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 27/136 (19%)

Query: 74  VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDT 130
            +A       PLH+AA Y    +V+ L++     +D                 K+     
Sbjct: 51  CHASDGRKSTPLHLAAGYNRVRIVQLLLQ---HGADVHA--------------KDKGGLV 93

Query: 131 ALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEIL-QKCPS 187
            LH A   G  +V ++LL  GA      + +    TPL+ AA++   E+   +L      
Sbjct: 94  PLHNACSYGHYEVTELLLKHGAC---VNAMDLWQFTPLHEAASKNRVEV-CSLLLSHGAD 149

Query: 188 PAHEGPNGKTALHAAV 203
           P     +GK+A+  A 
Sbjct: 150 PTLVNCHGKSAVDMAP 165

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 76.8 bits (190), Expect = 2e-16
 Identities = 40/197 (20%), Positives = 66/197 (33%), Gaps = 49/197 (24%)

Query: 31  THKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ----VNAK---GDAPLH 83
              + T LH    A+     E           +      LLL            G + + 
Sbjct: 121 DLWQFTPLH---EAASKNRVE-----------VCS----LLLSHGADPTLVNCHGKSAVD 162

Query: 84  VAARYGHAAVVEALIE-----IAKQESDQE-----IESGVESTARHMLGMKNDEEDTALH 133
           +A        +    +      A +E+D       +   + +        +    +TALH
Sbjct: 163 MAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFK------QPQSHETALH 216

Query: 134 EAVQSG---SLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSP 188
            AV S       V ++LL  GA+       N    TPL++AA RAH ++   + +     
Sbjct: 217 CAVASLHPKRKQVAELLLRKGANV---NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKM 273

Query: 189 AHEGPNGKTALHAAVCS 205
                 G+TALH A  +
Sbjct: 274 NALDSLGQTALHRAALA 290

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 74.8 bits (185), Expect = 8e-16
 Identities = 36/182 (19%), Positives = 50/182 (27%), Gaps = 55/182 (30%)

Query: 31  THKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ----VNAK---GDAPLH 83
                  LH    A    + E           + E    LLL+    VNA       PLH
Sbjct: 88  DKGGLVPLH---NACSYGHYE-----------VTE----LLLKHGACVNAMDLWQFTPLH 129

Query: 84  VAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDV 143
            AA      V   L+             G + T        N    +A+  A      + 
Sbjct: 130 EAASKNRVEVCSLLLS-----------HGADPTL------VNCHGKSAVDMAPTPELRER 172

Query: 144 VKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAV 203
           +                 G + L  AA  A      + L        +  + +TALH AV
Sbjct: 173 LTYEF------------KGHSLLQ-AAREADLAKVKKTLALEIINFKQPQSHETALHCAV 219

Query: 204 CS 205
            S
Sbjct: 220 AS 221

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 72.9 bits (180), Expect = 4e-15
 Identities = 43/211 (20%), Positives = 72/211 (34%), Gaps = 59/211 (27%)

Query: 5   LYEAAAKGEIEPFNQLAIDRQLGSLVTHKKN--TVLHVNIIASYTQNKEGESVSTKFVER 62
           L +AA + ++    +              ++  T LH  + + + + K+           
Sbjct: 182 LLQAAREADLAKVKKTLA--LEIINFKQPQSHETALHCAVASLHPKRKQ----------- 228

Query: 63  IIEMCPSLLLQ----VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVES 115
           + E    LLL+    VN K      PLHVAA   H  V+E L +            G + 
Sbjct: 229 VAE----LLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHK-----------HGAKM 273

Query: 116 TARHMLGMKNDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARA 173
            A       +    TALH A  +G L   ++LL  G+DP+     +  G T   +     
Sbjct: 274 NA------LDSLGQTALHRAALAGHLQTCRLLLSYGSDPS---IISLQGFTAAQMGNEAV 324

Query: 174 HKEIS--AEILQKCPSPAHEGPNGKTALHAA 202
            + +S    +            +    L  A
Sbjct: 325 QQILSESTPM---------RTSDVDYRLLEA 346

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 69.8 bits (172), Expect = 5e-14
 Identities = 28/137 (20%), Positives = 45/137 (32%), Gaps = 28/137 (20%)

Query: 74  VNAKGD----APLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEED 129
               G+      L  A       ++  L               V   A       +  + 
Sbjct: 17  AVLTGEYKKDELLEAARSGNEEKLMALL-----------TPLNVNCHA------SDGRKS 59

Query: 130 TALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEIL-QKCP 186
           T LH A     + +V++LL  GAD    ++ +  G  PL+ A +  H E+  E+L +   
Sbjct: 60  TPLHLAAGYNRVRIVQLLLQHGAD---VHAKDKGGLVPLHNACSYGHYEV-TELLLKHGA 115

Query: 187 SPAHEGPNGKTALHAAV 203
                     T LH A 
Sbjct: 116 CVNAMDLWQFTPLHEAA 132

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 81.1 bits (201), Expect = 3e-18
 Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 24/135 (17%)

Query: 74  VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDT 130
           + A+   G  PLHVA  +  A +V  L            ++G +               T
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLL-----------RDAGADLNKPE-----PTCGRT 194

Query: 131 ALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSP 188
            LH AV++ +  V+++LL  GADP    +    G TPL  A  R +  ++  +       
Sbjct: 195 PLHLAVEAQAASVLELLLKAGADPT---ARMYGGRTPLGSALLRPNPILARLLRAHGAPE 251

Query: 189 AHEGPNGKTALHAAV 203
             +G +  +   ++ 
Sbjct: 252 PEDGGDKLSPCSSSG 266

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 78.0 bits (193), Expect = 4e-17
 Identities = 30/136 (22%), Positives = 44/136 (32%), Gaps = 19/136 (13%)

Query: 74  VNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALH 133
           V   GD  LH+A  + H   ++ L           +             ++ND   TALH
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFL-----------LGFSAGHEYLD---LQNDLGQTALH 50

Query: 134 EAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHE 191
            A   G    V+ L   GA       A   G T L+LA        +  +LQ  PS   +
Sbjct: 51  LAAILGEASTVEKLYAAGAG---VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRD 107

Query: 192 GPNGKTALHAAVCSRS 207
             +            +
Sbjct: 108 ASDTYLTQSQDCTPDT 123

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 77.2 bits (191), Expect = 7e-17
 Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 48/158 (30%)

Query: 36  TVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ----VNAK----GDAPLHVAAR 87
           T LH   +A   ++ E           ++     LL      +N      G  PLH+A  
Sbjct: 160 TPLH---VAVIHKDAE-----------MVR----LLRDAGADLNKPEPTCGRTPLHLAVE 201

Query: 88  YGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKIL 147
              A+V+E L++           +G + TA      +     T L  A+   +  + ++L
Sbjct: 202 AQAASVLELLLK-----------AGADPTA------RMYGGRTPLGSALLRPNPILARLL 244

Query: 148 L--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQ 183
              GA         G   +P   + + +  +   E  +
Sbjct: 245 RAHGAP---EPEDGGDKLSPCSSSGSDSDSDNRDEGDE 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 74.5 bits (184), Expect = 7e-16
 Identities = 35/197 (17%), Positives = 55/197 (27%), Gaps = 58/197 (29%)

Query: 30  VTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ-------VNAK---GD 79
           VT   +T LH   +A   Q++             ++     LL        ++ +   G 
Sbjct: 5   VTEDGDTALH---LAVIHQHEP-----------FLD----FLLGFSAGHEYLDLQNDLGQ 46

Query: 80  APLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSG 139
             LH+AA  G A+ VE L             +G                 TALH A +  
Sbjct: 47  TALHLAAILGEASTVEKLYA-----------AGAGVLV------AERGGHTALHLACRVR 89

Query: 140 SLDVVKILL--GAD----------PAFPYSANGSGETPLYLAAARAHKEISAEIL-QKCP 186
           +     +LL                        +   P  + +    +            
Sbjct: 90  AHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRL 149

Query: 187 SPAHEGPNGKTALHAAV 203
               E  +G T LH AV
Sbjct: 150 QLEAENYDGHTPLHVAV 166

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 68.3 bits (168), Expect = 9e-14
 Identities = 26/86 (30%), Positives = 32/86 (37%), Gaps = 4/86 (4%)

Query: 121 LGMKNDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEIS 178
            G   ++ DTALH AV       +  LL   A   +    N  G+T L+LAA        
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST- 60

Query: 179 AEIL-QKCPSPAHEGPNGKTALHAAV 203
            E L             G TALH A 
Sbjct: 61  VEKLYAAGAGVLVAERGGHTALHLAC 86

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 50.6 bits (122), Expect = 1e-07
 Identities = 18/123 (14%), Positives = 29/123 (23%), Gaps = 42/123 (34%)

Query: 36  TVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ----VNAK---GDAPLHVAARY 88
           T LH   +A   Q              ++E    LLL+      A+   G  PL  A   
Sbjct: 194 TPLH---LAVEAQAAS-----------VLE----LLLKAGADPTARMYGGRTPLGSALLR 235

Query: 89  GHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILL 148
            +  +   L              G              ++ +    +      D      
Sbjct: 236 PNPILARLLRA-----------HGAPEPE------DGGDKLSPCSSSGSDSDSDNRDEGD 278

Query: 149 GAD 151
             D
Sbjct: 279 EYD 281

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 80.2 bits (199), Expect = 3e-18
 Identities = 45/195 (23%), Positives = 71/195 (36%), Gaps = 49/195 (25%)

Query: 35  NTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ----VNAK---GDAPLHVAAR 87
            T L    IAS       E+ +++  E    +    + Q     N     G+  LH+AAR
Sbjct: 11  FTPLM---IASC-SGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAAR 66

Query: 88  YGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKIL 147
           Y  +   + L+E     +D  I              +++   T LH AV + +  V +IL
Sbjct: 67  YSRSDAAKRLLE---ASADANI--------------QDNMGRTPLHAAVSADAQGVFQIL 109

Query: 148 LGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPN-------GKTALH 200
           +        +    G TPL LAA  A + +  E L           +       GK+ALH
Sbjct: 110 IRNRATDLDARMHDGTTPLILAARLAVEGM-LEDLINS------HADVNAVDDLGKSALH 162

Query: 201 AAVCSRSCAASRCHK 215
                   AA+  + 
Sbjct: 163 -------WAAAVNNV 170

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 77.5 bits (192), Expect = 3e-17
 Identities = 36/148 (24%), Positives = 54/148 (36%), Gaps = 34/148 (22%)

Query: 74  VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDT 130
           ++A+   G  PL +AAR     ++E LI            S  +  A       +D   +
Sbjct: 117 LDARMHDGTTPLILAARLAVEGMLEDLIN-----------SHADVNA------VDDLGKS 159

Query: 131 ALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEIL-QKCPS 187
           ALH A    ++D   +LL  GA+       N   ETPL+LAA     E  A++L     +
Sbjct: 160 ALHWAAAVNNVDAAVVLLKNGANKD---MQNNREETPLFLAAREGSYET-AKVLLDHFAN 215

Query: 188 PAHEGPNGKTALHAAVCSRSCAASRCHK 215
                   +            A  R H 
Sbjct: 216 RDITDHMDRLPRD-------IAQERMHH 236

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 77.1 bits (191), Expect = 5e-17
 Identities = 33/157 (21%), Positives = 55/157 (35%), Gaps = 48/157 (30%)

Query: 35  NTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ----VNAK---GDAPLHVAAR 87
            T L    +A+    +            ++E     L+     VNA    G + LH AA 
Sbjct: 125 TTPLI---LAARLAVEG-----------MLE----DLINSHADVNAVDDLGKSALHWAAA 166

Query: 88  YGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKIL 147
             +      L++           +G          M+N+ E+T L  A + GS +  K+L
Sbjct: 167 VNNVDAAVVLLK-----------NGAN------KDMQNNREETPLFLAAREGSYETAKVL 209

Query: 148 L--GADPAFPYSANGSGETPLYLAAARAHKEISAEIL 182
           L   A+       +     P  +A  R H +I   +L
Sbjct: 210 LDHFAN---RDITDHMDRLPRDIAQERMHHDI-VRLL 242

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 71.3 bits (176), Expect = 6e-15
 Identities = 32/144 (22%), Positives = 49/144 (34%), Gaps = 28/144 (19%)

Query: 74  VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQE--IESGVESTARHMLGMKNDEE 128
           VN +   G  PL +A+  G         E     +     I  G     +      +   
Sbjct: 3   VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQ-----TDRTG 57

Query: 129 DTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCP 186
           +TALH A +    D  K LL   AD       +  G TPL+ A +   + +  +IL +  
Sbjct: 58  ETALHLAARYSRSDAAKRLLEASAD---ANIQDNMGRTPLHAAVSADAQGV-FQILIR-- 111

Query: 187 SPAHEGPN-------GKTALHAAV 203
              +   +       G T L  A 
Sbjct: 112 ---NRATDLDARMHDGTTPLILAA 132

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 54.4 bits (132), Expect = 6e-09
 Identities = 18/127 (14%), Positives = 40/127 (31%), Gaps = 44/127 (34%)

Query: 35  NTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ----VNAK---GDAPLHVAAR 87
            + LH    A+   N +                  +LL+     + +    + PL +AAR
Sbjct: 158 KSALH---WAAAVNNVD-----------AAV----VLLKNGANKDMQNNREETPLFLAAR 199

Query: 88  YGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKIL 147
            G     + L++     ++++I               +  +      A +    D+V++L
Sbjct: 200 EGSYETAKVLLD---HFANRDI--------------TDHMDRLPRDIAQERMHHDIVRLL 242

Query: 148 L--GADP 152
                  
Sbjct: 243 DLEHHHH 249

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 79.0 bits (196), Expect = 3e-18
 Identities = 34/198 (17%), Positives = 58/198 (29%), Gaps = 70/198 (35%)

Query: 35  NTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLL----QVNAK---GDAPLHVAAR 87
            T L    +A     +             I+     L+    ++  K   G   L  A +
Sbjct: 36  RTPLM---VACMLGMEN-----------AID----KLVENFDKLEDKDIEGSTALIWAVK 77

Query: 88  YGHAAVVEALIEI-AKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKI 146
                + E L+   +       + +            K+    T L  ++  G  ++   
Sbjct: 78  NNRLGIAEKLLSKGS------NVNT------------KDFSGKTPLMWSIIFGYSEMSYF 119

Query: 147 LL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPN-------GKT 197
           LL  GA+       N  GETPL +A+     EI  + L +       G +       G T
Sbjct: 120 LLEHGANV---NDRNLEGETPLIVASKYGRSEI-VKKLLEL------GADISARDLTGLT 169

Query: 198 ALHAAVCSRSCAASRCHK 215
           A          A     +
Sbjct: 170 AEA-------SARIFGRQ 180

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 74.0 bits (183), Expect = 3e-16
 Identities = 35/158 (22%), Positives = 54/158 (34%), Gaps = 50/158 (31%)

Query: 35  NTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ----VNAK---GDAPLHVAAR 87
           +T L     A                  I E     LL     VN K   G  PL  +  
Sbjct: 69  STALI---WAVKNNRLG-----------IAE----KLLSKGSNVNTKDFSGKTPLMWSII 110

Query: 88  YGHAAVVEALIEI-AKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKI 146
           +G++ +   L+E  A       +              +N E +T L  A + G  ++VK 
Sbjct: 111 FGYSEMSYFLLEHGA------NVND------------RNLEGETPLIVASKYGRSEIVKK 152

Query: 147 LL--GADPAFPYSANGSGETPLYLAAARAHKEISAEIL 182
           LL  GAD     + + +G T    A     +E+  +I 
Sbjct: 153 LLELGAD---ISARDLTGLTAEASARIFGRQEV-IKIF 186

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 70.9 bits (175), Expect = 3e-15
 Identities = 21/151 (13%), Positives = 36/151 (23%), Gaps = 49/151 (32%)

Query: 74  VNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALH 133
           ++  G+    +         ++ L                          ++    T L 
Sbjct: 4   MDKNGEIVEKIKDEKSINQNLDFLRNY-----------------------RDSYNRTPLM 40

Query: 134 EAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHE 191
            A   G  + +  L+            +  G T L  A       I AE L        +
Sbjct: 41  VACMLGMENAIDKLVENFDK---LEDKDIEGSTALIWAVKNNRLGI-AEKLLS------K 90

Query: 192 GPN-------GKTALHAAVCSRSCAASRCHK 215
           G N       GKT L         +    + 
Sbjct: 91  GSNVNTKDFSGKTPLM-------WSIIFGYS 114

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 54.7 bits (133), Expect = 2e-09
 Identities = 26/122 (21%), Positives = 44/122 (36%), Gaps = 44/122 (36%)

Query: 35  NTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ----VNAK---GDAPLHVAAR 87
            T L     +      E           +       LL+    VN +   G+ PL VA++
Sbjct: 102 KTPLM---WSIIFGYSE-----------MSY----FLLEHGANVNDRNLEGETPLIVASK 143

Query: 88  YGHAAVVEALIEI-AKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKI 146
           YG + +V+ L+E+ A      +I +            ++    TA   A   G  +V+KI
Sbjct: 144 YGRSEIVKKLLELGA------DISA------------RDLTGLTAEASARIFGRQEVIKI 185

Query: 147 LL 148
             
Sbjct: 186 FT 187

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 38.5 bits (91), Expect = 8e-04
 Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 23/74 (31%)

Query: 35  NTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ---VNAK---GDAPLHVAARY 88
            T L    +AS     E           I++    LL     ++A+   G      A  +
Sbjct: 135 ETPLI---VASKYGRSE-----------IVKK---LLELGADISARDLTGLTAEASARIF 177

Query: 89  GHAAVVEALIEIAK 102
           G   V++   E+ +
Sbjct: 178 GRQEVIKIFTEVRR 191

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 77.8 bits (193), Expect = 4e-18
 Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 48/158 (30%)

Query: 35  NTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ----VNAK---GDAPLHVAAR 87
            + LH   +A+   +               E    +LL+     +A+      PLH+AA 
Sbjct: 35  TSPLH---LAAQYGHFS-----------TTE----VLLRAGVSRDARTKVDRTPLHMAAS 76

Query: 88  YGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKIL 147
            GHA +VE L++            G +  A      K+  + TALH A +    +VV++L
Sbjct: 77  EGHANIVEVLLK-----------HGADVNA------KDMLKMTALHWATEHNHQEVVELL 119

Query: 148 L--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQ 183
           +  GAD     + +   +T   ++    ++++ AEILQ
Sbjct: 120 IKYGADVH---TQSKFCKTAFDISIDNGNEDL-AEILQ 153

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 77.8 bits (193), Expect = 4e-18
 Identities = 37/141 (26%), Positives = 58/141 (41%), Gaps = 38/141 (26%)

Query: 74  VNAK--GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTA 131
                 G +PLH+AA+YGH +  E L+            +GV   A      +   + T 
Sbjct: 28  FTTDWLGTSPLHLAAQYGHFSTTEVLLR-----------AGVSRDA------RTKVDRTP 70

Query: 132 LHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPA 189
           LH A   G  ++V++LL  GAD     + +    T L+ A    H+E+  E+L K     
Sbjct: 71  LHMAASEGHANIVEVLLKHGADV---NAKDMLKMTALHWATEHNHQEV-VELLIK----- 121

Query: 190 HEGPN-------GKTALHAAV 203
             G +        KTA   ++
Sbjct: 122 -YGADVHTQSKFCKTAFDISI 141

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 73.2 bits (181), Expect = 2e-16
 Identities = 33/135 (24%), Positives = 45/135 (33%), Gaps = 37/135 (27%)

Query: 78  GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQ 137
               L  AAR G    V  L           + +G   T        +    + LH A Q
Sbjct: 2   LGKKLLEAARAGQDDEVRIL-----------MANGAPFT-------TDWLGTSPLHLAAQ 43

Query: 138 SGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPN- 194
            G     ++LL  G       +      TPL++AA+  H  I  E+L K       G + 
Sbjct: 44  YGHFSTTEVLLRAGVS---RDARTKVDRTPLHMAASEGHANI-VEVLLKH------GADV 93

Query: 195 ------GKTALHAAV 203
                   TALH A 
Sbjct: 94  NAKDMLKMTALHWAT 108

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 77.8 bits (193), Expect = 4e-18
 Identities = 38/185 (20%), Positives = 62/185 (33%), Gaps = 51/185 (27%)

Query: 30  VTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ----VNAK---GDAPL 82
           +       L     A+   + E            +      LLQ    VNA+   G   L
Sbjct: 1   MAEPWGNELA---SAAARGDLE-----------QLT----SLLQNNVNVNAQNGFGRTAL 42

Query: 83  HVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLD 142
            V    G+  +   L+    + ++ ++              K+      +H+A ++G LD
Sbjct: 43  QVMK-LGNPEIARRLLL---RGANPDL--------------KDRTGFAVIHDAARAGFLD 84

Query: 143 VVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEIL--QKCPSPAHEGPNGKTA 198
            ++ LL   AD       +  G  PL+LAA   H  +  E L      +  H    G TA
Sbjct: 85  TLQTLLEFQADVN---IEDNEGNLPLHLAAKEGHLRV-VEFLVKHTASNVGHRNHKGDTA 140

Query: 199 LHAAV 203
              A 
Sbjct: 141 CDLAR 145

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 74.3 bits (184), Expect = 1e-16
 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 21/112 (18%)

Query: 74  VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDT 130
            + K   G A +H AAR G    ++ L+E    ++D  I              +++E + 
Sbjct: 63  PDLKDRTGFAVIHDAARAGFLDTLQTLLE---FQADVNI--------------EDNEGNL 105

Query: 131 ALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEIL 182
            LH A + G L VV+ L+    +     N  G+T   LA      E+   ++
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEV-VSLM 156

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 55.1 bits (134), Expect = 1e-09
 Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 41/124 (33%)

Query: 35  NTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ---VNAK---GDAPLHVAARY 88
             V+H    A+     +            ++    LL     VN +   G+ PLH+AA+ 
Sbjct: 71  FAVIH---DAARAGFLD-----------TLQT---LLEFQADVNIEDNEGNLPLHLAAKE 113

Query: 89  GHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILL 148
           GH  VVE L++     S+                 +N + DTA   A   G  +VV ++ 
Sbjct: 114 GHLRVVEFLVK--HTASNVGH--------------RNHKGDTACDLARLYGRNEVVSLMQ 157

Query: 149 --GA 150
             GA
Sbjct: 158 ANGA 161

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 80.7 bits (200), Expect = 5e-18
 Identities = 25/133 (18%), Positives = 46/133 (34%), Gaps = 23/133 (17%)

Query: 74  VNAK-GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTAL 132
            N    + PLH AA      +V+ L+            SG++ +        +D+ +TAL
Sbjct: 57  KNLLENEFPLHQAATLEDTKIVKILLF-----------SGLDDSQ------FDDKGNTAL 99

Query: 133 HEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAH 190
           + AV SG++  VK+ +         +      +T  Y A       I             
Sbjct: 100 YYAVDSGNMQTVKLFVKKNWRL--MFYGKTGWKTSFYHAVMLNDVSI-VSYFLSEIPSTF 156

Query: 191 EGPNGKTALHAAV 203
           +     + +H  +
Sbjct: 157 DLAILLSCIHITI 169

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 77.6 bits (192), Expect = 5e-17
 Identities = 25/144 (17%), Positives = 43/144 (29%), Gaps = 33/144 (22%)

Query: 70  LLLQ---VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGM 123
             L           G +  + A    +  +V  L+      + + +              
Sbjct: 17  SFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLN---AGALKNLLEN----------- 62

Query: 124 KNDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEI 181
                +  LH+A       +VKILL  G D       +  G T LY A    + +   ++
Sbjct: 63  -----EFPLHQAATLEDTKIVKILLFSGLD---DSQFDDKGNTALYYAVDSGNMQT-VKL 113

Query: 182 LQKCPSPAHEGPN--GKTALHAAV 203
             K             KT+ + AV
Sbjct: 114 FVKKNWRLMFYGKTGWKTSFYHAV 137

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 64.9 bits (159), Expect = 2e-12
 Identities = 12/142 (8%), Positives = 36/142 (25%), Gaps = 36/142 (25%)

Query: 70  LLLQVNA------KGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGM 123
             L             + +H+  + GH  ++  L           ++    +        
Sbjct: 147 YFLSEIPSTFDLAILLSCIHITIKNGHVDMMILL-----------LDYMTSTNT------ 189

Query: 124 KNDEEDT-ALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAE 180
            N       +  A+ +  +++++ L     +            +           EI+  
Sbjct: 190 NNSLLFIPDIKLAIDNKDIEMLQALFKYDINI----------YSANLENVLLDDAEIAKM 239

Query: 181 ILQKCPSPAHEGPNGKTALHAA 202
           I++K      +       +   
Sbjct: 240 IIEKHVEYKSDSYTKDLDIVKN 261

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 78.5 bits (194), Expect = 1e-17
 Identities = 32/149 (21%), Positives = 47/149 (31%), Gaps = 41/149 (27%)

Query: 73  QVNAK------GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKND 126
                          L  AA  G   VV+  ++              + +        N+
Sbjct: 10  SPRKARRARLNPLVLLLDAALTGELEVVQQAVK-----------EMNDPSQ------PNE 52

Query: 127 EEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEI------- 177
           E  TALH A+   +  +V  L+  GA+     S +  G TPL+ AA+     I       
Sbjct: 53  EGITALHNAICGANYSIVDFLITAGANVN---SPDSHGWTPLHCAASCNDTVICMALVQH 109

Query: 178 SAEILQKCPSPAHEGPNGKTALHAAVCSR 206
            A I     S      +G TA       R
Sbjct: 110 GAAIFATTLS------DGATAFEKCDPYR 132

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 66.9 bits (164), Expect = 2e-13
 Identities = 40/202 (19%), Positives = 60/202 (29%), Gaps = 52/202 (25%)

Query: 5   LYEAAAKGEIEPFNQLAIDRQLGSLVTHKKN---TVLHVNIIASYTQNKEGESVSTKFVE 61
           L +AA  GE+E   Q  +     +  +       T LH    A    N            
Sbjct: 25  LLDAALTGELEVVQQA-VKE--MNDPSQPNEEGITALH---NAICGANYS---------- 68

Query: 62  RIIEMCPSLLLQ----VNAK---GDAPLHVAARYGHAAVVEALIEI-----AKQESD--- 106
            I++     L+     VN+    G  PLH AA      +  AL++      A   SD   
Sbjct: 69  -IVD----FLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGAT 123

Query: 107 -----QEIESGVESTARHML------GMKNDEEDTALHEAVQSGSLDVVKILLGADPAFP 155
                     G    A ++       G+ N     AL +       D +    G      
Sbjct: 124 AFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSA-EFGDELSFREGES-VTV 181

Query: 156 YSANGSGETPLYLAAARAHKEI 177
              +G  ET  + AA    +  
Sbjct: 182 LRRDGPEETDWWWAALHGQEGY 203

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 144 VKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHA 201
           ++ +L     P     A  +    L  AA     E+  + +++   P+     G TALH 
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60

Query: 202 AVC 204
           A+C
Sbjct: 61  AIC 63

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 75.3 bits (186), Expect = 1e-17
 Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 23/112 (20%)

Query: 74  VNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALH 133
           + +     L  AAR G    V  L+      +D                 K+    T LH
Sbjct: 20  MGSDLGKKLLEAARAGQDDEVRILMA---NGADVAA--------------KDKNGSTPLH 62

Query: 134 EAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQ 183
            A ++G L+VVK+LL  GAD     + +  G+T   ++    ++++ AEILQ
Sbjct: 63  LAARNGHLEVVKLLLEAGAD---VXAQDKFGKTAFDISIDNGNEDL-AEILQ 110

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 66.4 bits (163), Expect = 2e-14
 Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 25/121 (20%)

Query: 85  AARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVV 144
            + + H      L           +  G              +    L EA ++G  D V
Sbjct: 1   GSSHHHHHHSSGL-----------VPRGSH---------MGSDLGKKLLEAARAGQDDEV 40

Query: 145 KILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAA 202
           +IL+  GAD A   + + +G TPL+LAA   H E+   +L+       +   GKTA   +
Sbjct: 41  RILMANGADVA---AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS 97

Query: 203 V 203
           +
Sbjct: 98  I 98

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 78.0 bits (193), Expect = 1e-17
 Identities = 35/157 (22%), Positives = 56/157 (35%), Gaps = 51/157 (32%)

Query: 74  VNAK---GDAPLHVAARYGHAAVVEALIE----IAKQESDQEIESGVESTARHMLGMKND 126
           V+ +   G+  LH+AA Y +      L+E    +  +                    +  
Sbjct: 30  VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMT----------------SELY 73

Query: 127 EEDTALHEAVQSGSLDVVKILL--GAD----------PAFPYSANGSGETPLYLAAARAH 174
           E  TALH AV + ++++V+ LL  GA              P++    GE PL  AA    
Sbjct: 74  EGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGS 133

Query: 175 KEISAEIL--------QKCPSPAHEGPNGKTALHAAV 203
           +EI   +L         +          G T LH  +
Sbjct: 134 EEI-VRLLIEHGADIRAQ-------DSLGNTVLHILI 162

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 77.3 bits (191), Expect = 3e-17
 Identities = 40/220 (18%), Positives = 75/220 (34%), Gaps = 42/220 (19%)

Query: 5   LYEAAAKGEIEPFNQLAIDRQLGSLVTHKKN---TVLHVNIIASYTQNKEGESVSTKFVE 61
           L  AA + +++  ++L      G  V  +     T LH   IA+   N E          
Sbjct: 7   LLLAAKENDVQALSKLLKFE--GCEVHQRGAMGETALH---IAALYDNLE-------AAM 54

Query: 62  RIIEMCPSLLLQ-VNAK---GDAPLHVAARYGHAAVVEALIE--IAKQESDQEIESGVES 115
            ++E  P L+ + + ++   G   LH+A    +  +V AL+    +              
Sbjct: 55  VLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRP 114

Query: 116 TARHMLGMKNDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARA 173
                 G      +  L  A   GS ++V++L+  GAD     + +  G T L++   + 
Sbjct: 115 HNLIYYG------EHPLSFAACVGSEEIVRLLIEHGADI---RAQDSLGNTVLHILILQP 165

Query: 174 HKEISAEILQ----------KCPSPAHEGPNGKTALHAAV 203
           +K  + ++                       G T    A 
Sbjct: 166 NKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAG 205

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 73.8 bits (182), Expect = 6e-16
 Identities = 25/145 (17%), Positives = 45/145 (31%), Gaps = 35/145 (24%)

Query: 78  GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQ 137
            ++PL +AA+      +  L+             G E         +    +TALH A  
Sbjct: 3   WESPLLLAAKENDVQALSKLL----------KFEGCEVHQ------RGAMGETALHIAAL 46

Query: 138 SGSLDVVKILL--GAD--PAFPYSANGSGETPLYLAAARAHKEISAEIL----------- 182
             +L+   +L+    +       S    G+T L++A    +  +    L           
Sbjct: 47  YDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNL-VRALLARGASVSARA 105

Query: 183 ---QKCPSPAHEGPNGKTALHAAVC 204
                   P +    G+  L  A C
Sbjct: 106 TGSVFHYRPHNLIYYGEHPLSFAAC 130

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 61.9 bits (151), Expect = 1e-11
 Identities = 33/177 (18%), Positives = 50/177 (28%), Gaps = 65/177 (36%)

Query: 35  NTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ----VNAK------------- 77
            T LH   IA   QN             ++      LL     V+A+             
Sbjct: 76  QTALH---IAVINQNVN-----------LVR----ALLARGASVSARATGSVFHYRPHNL 117

Query: 78  ---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHE 134
              G+ PL  AA  G   +V  LIE            G +  A      ++   +T LH 
Sbjct: 118 IYYGEHPLSFAACVGSEEIVRLLIE-----------HGADIRA------QDSLGNTVLHI 160

Query: 135 AVQSGSLDVVK------ILLGADP---AFPYSANGSGETPLYLAAARAHKEISAEIL 182
            +   +           +         +     N  G TP  LA    +  +  + L
Sbjct: 161 LILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVM-FQHL 216

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 54.9 bits (133), Expect = 3e-09
 Identities = 15/127 (11%), Positives = 39/127 (30%), Gaps = 34/127 (26%)

Query: 35  NTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ----VNAK---GDAPLHVAAR 87
              L     A+   ++E           I+     LL++    + A+   G+  LH+   
Sbjct: 122 EHPLS---FAACVGSEE-----------IVR----LLIEHGADIRAQDSLGNTVLHILIL 163

Query: 88  YGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKIL 147
             +      +  +        +        + +  + N++  T    A   G++ + + L
Sbjct: 164 QPNKTFACQMYNLL-------LSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHL 216

Query: 148 L--GADP 152
           +      
Sbjct: 217 MQKRKHI 223

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 78.3 bits (194), Expect = 3e-17
 Identities = 36/176 (20%), Positives = 58/176 (32%), Gaps = 40/176 (22%)

Query: 33  KKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGD--APLHVAARYGH 90
           K+        +  +  ++             +E       +   K D  A    A   G 
Sbjct: 7   KQKRNEQ---LKRWIGSET-----------DLEPPVVKRKKTKVKFDDGAVFLAACSSGD 52

Query: 91  AAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILL-- 148
              V  L+E            G +          N +  TALH+A    ++D+VK L+  
Sbjct: 53  TEEVLRLLE-----------RGADINY------ANVDGLTALHQACIDDNVDMVKFLVEN 95

Query: 149 GADPAFPYSANGSGETPLYLAAARAHKEISAEIL-QKCPSPAHEGPNGKTALHAAV 203
           GA+       +  G  PL+ AA+  + +I AE L  +          G T L  A 
Sbjct: 96  GANIN---QPDNEGWIPLHAAASCGYLDI-AEYLISQGAHVGAVNSEGDTPLDIAE 147

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 74.5 bits (184), Expect = 9e-16
 Identities = 40/190 (21%), Positives = 58/190 (30%), Gaps = 46/190 (24%)

Query: 35  NTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ----VNAK---GDAPLHVAAR 87
              LH    A+     +           I E     L+     V A    GD PL +A  
Sbjct: 107 WIPLH---AAASCGYLD-----------IAE----YLISQGAHVGAVNSEGDTPLDIAEE 148

Query: 88  YGHAAVVEALIEIAKQESDQEIESGVESTARHM------------LGMKNDEEDTALHEA 135
                +++    + +Q  D E     E                           TALH A
Sbjct: 149 EAMEELLQNE--VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVA 206

Query: 136 VQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEIL-QKCPSPAHEG 192
              G  +V+K+L+    D       +  G TPL+ AA    +E    IL +         
Sbjct: 207 AAKGYTEVLKLLIQARYDV---NIKDYDGWTPLHAAAHWGKEEA-CRILVENLCDMEAVN 262

Query: 193 PNGKTALHAA 202
             G+TA   A
Sbjct: 263 KVGQTAFDVA 272

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 74.1 bits (183), Expect = 1e-15
 Identities = 25/133 (18%), Positives = 42/133 (31%), Gaps = 25/133 (18%)

Query: 75  NAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHE 134
           +AK      +    G    +E  +    +    ++                 ++      
Sbjct: 5   DAKQKRNEQLKRWIGSETDLEPPVV---KRKKTKV---------------KFDDGAVFLA 46

Query: 135 AVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEIL-QKCPSPAHE 191
           A  SG  + V  LL  GAD      AN  G T L+ A    + ++  + L +   +    
Sbjct: 47  ACSSGDTEEVLRLLERGAD---INYANVDGLTALHQACIDDNVDM-VKFLVENGANINQP 102

Query: 192 GPNGKTALHAAVC 204
              G   LHAA  
Sbjct: 103 DNEGWIPLHAAAS 115

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 71.0 bits (175), Expect = 1e-14
 Identities = 33/163 (20%), Positives = 53/163 (32%), Gaps = 52/163 (31%)

Query: 74  VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDT 130
           +N     G  PLH AA  G+  + E LI    Q +                   N E DT
Sbjct: 99  INQPDNEGWIPLHAAASCGYLDIAEYLIS---QGAHVGA--------------VNSEGDT 141

Query: 131 ALHEAVQSGSLDVVKILL-----------------------------GADPAFPYSANGS 161
            L  A +    ++++  +                               +         S
Sbjct: 142 PLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDV---RHAKS 198

Query: 162 GETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVC 204
           G T L++AAA+ + E+   ++Q       +  +G T LHAA  
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAH 241

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 70.6 bits (174), Expect = 2e-14
 Identities = 27/129 (20%), Positives = 44/129 (34%), Gaps = 26/129 (20%)

Query: 74  VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDT 130
                  G   LHVAA  G+  V++ LI+              +         K+ +  T
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQA-----------RYDVNI------KDYDGWT 234

Query: 131 ALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSP 188
            LH A   G  +  +IL+    D     + N  G+T   +A       +  E+ +K    
Sbjct: 235 PLHAAAHWGKEEACRILVENLCD---MEAVNKVGQTAFDVADEDILGYL-EELQKKQNLL 290

Query: 189 AHEGPNGKT 197
             E    K+
Sbjct: 291 HSEKREKKS 299

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 51.0 bits (123), Expect = 1e-07
 Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 6/83 (7%)

Query: 123 MKNDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAE 180
           M + ++          GS   ++  +                      A +    E    
Sbjct: 3   MADAKQKRNEQLKRWIGSETDLEPPVVKRKKT----KVKFDDGAVFLAACSSGDTEEVLR 58

Query: 181 ILQKCPSPAHEGPNGKTALHAAV 203
           +L++     +   +G TALH A 
Sbjct: 59  LLERGADINYANVDGLTALHQAC 81

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 73.5 bits (182), Expect = 3e-17
 Identities = 39/107 (36%), Positives = 55/107 (51%), Gaps = 23/107 (21%)

Query: 78  GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQ 137
           G  PLH+AAR GH  VV+ L+E     +D                 K+    T LH A +
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLE---AGADVNA--------------KDKNGRTPLHLAAR 44

Query: 138 SGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEIL 182
           +G L+VVK+LL  GAD     + + +G TPL+LAA   H E+  ++L
Sbjct: 45  NGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGHLEV-VKLL 87

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 58.9 bits (144), Expect = 8e-12
 Identities = 32/82 (39%), Positives = 41/82 (50%), Gaps = 22/82 (26%)

Query: 74  VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDT 130
           VNAK   G  PLH+AAR GH  VV+ L+E     +D                 K+    T
Sbjct: 28  VNAKDKNGRTPLHLAARNGHLEVVKLLLE---AGADVNA--------------KDKNGRT 70

Query: 131 ALHEAVQSGSLDVVKILL--GA 150
            LH A ++G L+VVK+LL  GA
Sbjct: 71  PLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 56.6 bits (138), Expect = 7e-11
 Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 5/75 (6%)

Query: 130 TALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPS 187
           T LH A ++G L+VVK+LL  GAD     + + +G TPL+LAA   H E+   +L+    
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 188 PAHEGPNGKTALHAA 202
              +  NG+T LH A
Sbjct: 61  VNAKDKNGRTPLHLA 75

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 77.1 bits (191), Expect = 3e-17
 Identities = 35/149 (23%), Positives = 56/149 (37%), Gaps = 26/149 (17%)

Query: 63  IIEMCPSLLLQ----VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVES 115
              +    + Q     N     G+  LH+AARY  +   + L+E           +  ++
Sbjct: 3   APAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE-----------ASADA 51

Query: 116 TARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHK 175
                   +++   T LH AV + +  V +IL+        +    G TPL LAA  A +
Sbjct: 52  NI------QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVE 105

Query: 176 EISAEIL-QKCPSPAHEGPNGKTALHAAV 203
            +  E L             GK+ALH A 
Sbjct: 106 GM-LEDLINSHADVNAVDDLGKSALHWAA 133

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 76.7 bits (190), Expect = 4e-17
 Identities = 34/175 (19%), Positives = 57/175 (32%), Gaps = 54/175 (30%)

Query: 35  NTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ----VNAK---GDAPLHVAAR 87
            T L    +A+    +            ++E     L+     VNA    G + LH AA 
Sbjct: 93  TTPLI---LAARLAVEG-----------MLE----DLINSHADVNAVDDLGKSALHWAAA 134

Query: 88  YGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKIL 147
             +      L++           +G           +N+ E+T L  A + GS +  K+L
Sbjct: 135 VNNVDAAVVLLK-----------NGANKDM------QNNREETPLFLAAREGSYETAKVL 177

Query: 148 L--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALH 200
           L   A+       +     P  +A  R H +I   +L +              LH
Sbjct: 178 LDHFAN---RDITDHMDRLPRDIAQERMHHDI-VRLLDE------YNLVRSPQLH 222

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 75.9 bits (188), Expect = 1e-16
 Identities = 41/199 (20%), Positives = 64/199 (32%), Gaps = 71/199 (35%)

Query: 35  NTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ-----VNAK---GDAPLHVAA 86
            T LH    A     +            + +    +L++     ++A+   G  PL +AA
Sbjct: 59  RTPLH---AAVSADAQG-----------VFQ----ILIRNRATDLDARMHDGTTPLILAA 100

Query: 87  RYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKI 146
           R     ++E LI            S  +  A       +D   +ALH A    ++D   +
Sbjct: 101 RLAVEGMLEDLIN-----------SHADVNA------VDDLGKSALHWAAAVNNVDAAVV 143

Query: 147 LL--GADPAFPYSANGSGETPLYLAAARAHKEISAEIL--------QKCPSPAHEGPNGK 196
           LL  GA+       N   ETPL+LAA     E  A++L                     +
Sbjct: 144 LLKNGANK---DMQNNREETPLFLAAREGSYET-AKVLLDHFANRDIT-------DHMDR 192

Query: 197 TALHAAVCSRSCAASRCHK 215
                       A  R H 
Sbjct: 193 LPRD-------IAQERMHH 204

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 77.9 bits (192), Expect = 3e-17
 Identities = 36/173 (20%), Positives = 56/173 (32%), Gaps = 35/173 (20%)

Query: 60  VERIIEMCPSLLLQ---VNAK-------GDAPLHVAA---RYGHAAVVEALIEIAKQESD 106
            + +  +   LL     +  +       G   L  A      G    +  L++IA++  +
Sbjct: 18  PDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGN 77

Query: 107 QEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILL--GAD-----------PA 153
                       +  G       TALH A++      V++L+  GAD           P 
Sbjct: 78  MREFINSPFRDVYYRGQ------TALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPK 131

Query: 154 FPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAH---EGPNGKTALHAAV 203
                   GE PL LAA      I   + +     A    +   G T LHA V
Sbjct: 132 DEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALV 184

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 74.0 bits (182), Expect = 8e-16
 Identities = 39/232 (16%), Positives = 66/232 (28%), Gaps = 42/232 (18%)

Query: 5   LYEAAAKGEIEPFNQLAIDRQLGSLVTHKKN-------------TVLHVNIIASYTQNKE 51
           L++  ++G  +    L     L  L+THKK              T L   ++       +
Sbjct: 9   LFDIVSRGSPDGLEGL-----LSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRND 63

Query: 52  GESVSTKFVERIIEMCPSLLLQVNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQE 108
              +     E+   M   +          G   LH+A        VE L+E   + +D  
Sbjct: 64  TIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVE---KGADVH 120

Query: 109 IESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPL 166
            ++          G      +  L  A  +    +V  L   G   A     +  G T L
Sbjct: 121 AQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVL 180

Query: 167 YLAAARAHK----------------EISAEILQKCPSPAHEGPNGKTALHAA 202
           +   A A                     A++       A    +G + L  A
Sbjct: 181 HALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMA 232

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 58.6 bits (142), Expect = 2e-10
 Identities = 36/188 (19%), Positives = 54/188 (28%), Gaps = 46/188 (24%)

Query: 36  TVLHVNIIASYTQNKE--------GESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAAR 87
           T LH   IA   + K         G  V  +   R     P         G+ PL +AA 
Sbjct: 95  TALH---IAIERRCKHYVELLVEKGADVHAQ--ARGRFFQPKDEGGYFYFGELPLSLAAC 149

Query: 88  YGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGS------- 140
                +V  L E   +++D              L  ++   +T LH  V           
Sbjct: 150 TNQPHIVHYLTENGHKQAD--------------LRRQDSRGNTVLHALVAIADNTRENTK 195

Query: 141 --LDVVKILL--GAD----PAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEG 192
               +  +LL   A            N  G +PL +AA      I   I+++        
Sbjct: 196 FVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRR----EIAD 251

Query: 193 PNGKTALH 200
                  H
Sbjct: 252 AAAHHHHH 259

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 42.5 bits (100), Expect = 6e-05
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 35  NTVLHVNIIASYTQNKEGESVSTKFVERIIEMC------PSLLLQVNAKGDAPLHVAARY 88
           NTVLH  +  +    +E     TK  + ++  C       +L   +N  G +PL +AA+ 
Sbjct: 177 NTVLHALVAIAD-NTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKT 235

Query: 89  GHAAVVEALIE 99
           G   + + +I 
Sbjct: 236 GKIGIFQHIIR 246

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 74.7 bits (185), Expect = 4e-17
 Identities = 40/138 (28%), Positives = 58/138 (42%), Gaps = 36/138 (26%)

Query: 75  NAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHE 134
            +     L  AAR G    V  L+            +G +  A      K++   T L+ 
Sbjct: 11  GSDLGKKLLEAARAGQDDEVRILMA-----------NGADVNA------KDEYGLTPLYL 53

Query: 135 AVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEG 192
           A   G L++V++LL  GAD     + +  G TPL+LAA   H EI AE+L K       G
Sbjct: 54  ATAHGHLEIVEVLLKNGAD---VNAVDAIGFTPLHLAAFIGHLEI-AEVLLK------HG 103

Query: 193 PN-------GKTALHAAV 203
            +       GKTA   ++
Sbjct: 104 ADVNAQDKFGKTAFDISI 121

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 74.0 bits (183), Expect = 7e-17
 Identities = 35/156 (22%), Positives = 62/156 (39%), Gaps = 46/156 (29%)

Query: 35  NTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ---VNAK---GDAPLHVAARY 88
              L     A+     +            + +   L+     VNAK   G  PL++A  +
Sbjct: 15  GKKLL---EAARAGQDD-----------EVRI---LMANGADVNAKDEYGLTPLYLATAH 57

Query: 89  GHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILL 148
           GH  +VE L++           +G +  A       +    T LH A   G L++ ++LL
Sbjct: 58  GHLEIVEVLLK-----------NGADVNA------VDAIGFTPLHLAAFIGHLEIAEVLL 100

Query: 149 --GADPAFPYSANGSGETPLYLAAARAHKEISAEIL 182
             GAD     + +  G+T   ++    ++++ AEIL
Sbjct: 101 KHGADVN---AQDKFGKTAFDISIGNGNEDL-AEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 51.2 bits (124), Expect = 1e-08
 Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 42/121 (34%)

Query: 35  NTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ----VNAK---GDAPLHVAAR 87
            T L+   +A+   + E           I+E    +LL+    VNA    G  PLH+AA 
Sbjct: 48  LTPLY---LATAHGHLE-----------IVE----VLLKNGADVNAVDAIGFTPLHLAAF 89

Query: 88  YGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKIL 147
            GH  + E L++            G +  A      ++    TA   ++ +G+ D+ +IL
Sbjct: 90  IGHLEIAEVLLK-----------HGADVNA------QDKFGKTAFDISIGNGNEDLAEIL 132

Query: 148 L 148
            
Sbjct: 133 Q 133

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 73.6 bits (182), Expect = 5e-17
 Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 39/138 (28%)

Query: 74  VNAK-GDAPLHVAARYGHAAVVEALIEI-AKQESDQEIESGVESTARHMLGMKNDEEDTA 131
             +K G+ PLH AA+ GHA  V+ L+   A      ++ +            ++ + +T 
Sbjct: 4   WGSKDGNTPLHNAAKNGHAEEVKKLLSKGA------DVNA------------RSKDGNTP 45

Query: 132 LHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPA 189
           LH A ++G  ++VK+LL  GAD     + +  G TP +LA    H EI  ++L       
Sbjct: 46  LHLAAKNGHAEIVKLLLAKGADVN---ARSKDGNTPEHLAKKNGHHEI-VKLLDA----- 96

Query: 190 HEGPN-------GKTALH 200
            +G +            H
Sbjct: 97  -KGADVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 58.9 bits (144), Expect = 2e-11
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 19/91 (20%)

Query: 124 KNDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEI 181
            + + +T LH A ++G  + VK LL  GAD     + +  G TPL+LAA   H EI  ++
Sbjct: 5   GSKDGNTPLHNAAKNGHAEEVKKLLSKGADV---NARSKDGNTPLHLAAKNGHAEI-VKL 60

Query: 182 LQKCPSPAHEGPN-------GKTALHAAVCS 205
           L        +G +       G T  H A  +
Sbjct: 61  LLA------KGADVNARSKDGNTPEHLAKKN 85

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 74.4 bits (184), Expect = 7e-17
 Identities = 28/135 (20%), Positives = 43/135 (31%), Gaps = 30/135 (22%)

Query: 73  QVNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEED 129
             NA    G  P+ V    G A V E L+      ++                       
Sbjct: 37  NPNAPNSYGRRPIQVMMM-GSARVAELLLL---HGAEPNCAD-------------PATLT 79

Query: 130 TALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPS 187
             +H+A + G LD + +L   GA        +  G  P+ LA    H+++ A  L+    
Sbjct: 80  RPVHDAAREGFLDTLVVLHRAGARLD---VRDAWGRLPVDLAEELGHRDV-ARYLRA--- 132

Query: 188 PAHEGPNGKTALHAA 202
            A  G  G       
Sbjct: 133 -AAGGTRGSNHARID 146

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 72.5 bits (179), Expect = 4e-16
 Identities = 26/130 (20%), Positives = 42/130 (32%), Gaps = 24/130 (18%)

Query: 77  KGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAV 136
                L  AA  G    V AL           +E+G    A       N      +   +
Sbjct: 11  PSADWLATAAARGRVEEVRAL-----------LEAGANPNA------PNSYGRRPIQVMM 53

Query: 137 QSGSLDVVKILL--GADPAFPYSANGSGET-PLYLAAARAHKEISAEILQKCPSPAHEGP 193
             GS  V ++LL  GA+P     A+ +  T P++ AA     +    + +          
Sbjct: 54  M-GSARVAELLLLHGAEPN---CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDA 109

Query: 194 NGKTALHAAV 203
            G+  +  A 
Sbjct: 110 WGRLPVDLAE 119

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 71.0 bits (175), Expect = 2e-15
 Identities = 22/116 (18%), Positives = 32/116 (27%), Gaps = 31/116 (26%)

Query: 70  LLLQ----VNAKGD----APLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHML 121
           LLL      N         P+H AAR G    +  L             +G         
Sbjct: 62  LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHR-----------AGARLDV---- 106

Query: 122 GMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEI 177
             ++      +  A + G  DV + L  A           G     + AA    +I
Sbjct: 107 --RDAWGRLPVDLAEELGHRDVARYLRAAA------GGTRGSNHARIDAAEGPSDI 154

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 54.8 bits (133), Expect = 1e-09
 Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 9/85 (10%)

Query: 122 GMKNDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISA 179
           G   +     L  A   G ++ V+ LL  GA+P    + N  G  P+ +        + A
Sbjct: 6   GSSMEPSADWLATAAARGRVEEVRALLEAGANPN---APNSYGRRPIQV-MMMGSARV-A 60

Query: 180 EIL-QKCPSPAHEGPNGKT-ALHAA 202
           E+L      P    P   T  +H A
Sbjct: 61  ELLLLHGAEPNCADPATLTRPVHDA 85

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 41.3 bits (98), Expect = 6e-05
 Identities = 10/82 (12%), Positives = 19/82 (23%), Gaps = 29/82 (35%)

Query: 70  LLLQ----VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLG 122
           +L +    ++ +   G  P+ +A   GH  V   L             +           
Sbjct: 96  VLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL-----------RAAAG--------- 135

Query: 123 MKNDEEDTALHEAVQSGSLDVV 144
                           G  D+ 
Sbjct: 136 --GTRGSNHARIDAAEGPSDIP 155

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 73.6 bits (182), Expect = 1e-16
 Identities = 27/135 (20%), Positives = 46/135 (34%), Gaps = 27/135 (20%)

Query: 74  VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDT 130
           ++      DA L  AA  G    V  L           +E+G +  A       N     
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQL-----------LEAGADPNA------LNRFGRR 47

Query: 131 ALHEAVQSGSLDVVKILL--GADPAFPYSANGSGET-PLYLAAARAHKEISAEILQKCPS 187
            +   +  GS  V ++LL  GA+P     A+ +  T P++ AA     +    + +    
Sbjct: 48  PIQVMMM-GSAQVAELLLLHGAEPN---CADPATLTRPVHDAAREGFLDTLVVLHRAGAR 103

Query: 188 PAHEGPNGKTALHAA 202
                  G+  +  A
Sbjct: 104 LDVCDAWGRLPVDLA 118

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 70.5 bits (174), Expect = 1e-15
 Identities = 26/115 (22%), Positives = 40/115 (34%), Gaps = 26/115 (22%)

Query: 73  QVNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEED 129
             NA    G  P+ V    G A V E L+      ++                       
Sbjct: 37  DPNALNRFGRRPIQVMMM-GSAQVAELLLL---HGAEPNCAD-------------PATLT 79

Query: 130 TALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEIL 182
             +H+A + G LD + +L   GA        +  G  P+ LA  + H++I A  L
Sbjct: 80  RPVHDAAREGFLDTLVVLHRAGARLD---VCDAWGRLPVDLAEEQGHRDI-ARYL 130

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 59.0 bits (144), Expect = 2e-11
 Identities = 16/92 (17%), Positives = 26/92 (28%), Gaps = 27/92 (29%)

Query: 70  LLLQ----VNAKGD----APLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHML 121
           LLL      N         P+H AAR G    +  L       +  ++            
Sbjct: 62  LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHR---AGARLDV------------ 106

Query: 122 GMKNDEEDTALHEAVQSGSLDVVKILL--GAD 151
              +      +  A + G  D+ + L     D
Sbjct: 107 --CDAWGRLPVDLAEEQGHRDIARYLHAATGD 136

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 76.1 bits (188), Expect = 1e-16
 Identities = 30/148 (20%), Positives = 42/148 (28%), Gaps = 46/148 (31%)

Query: 78  GDAPLHVAARYGHAAVVEALIEI-AKQESDQEIESGVESTARHMLGMKNDEEDTALHEAV 136
           G   L    R          I    + +                    N      L ++ 
Sbjct: 5   GQVSLPPGKRTNLRKTGSERIAHGMRVK-------------------FNPLPLALLLDSS 45

Query: 137 QSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPN 194
             G  D+V+ ++    DP+     N  G T L+ A    H EI  + L         G N
Sbjct: 46  LEGEFDLVQRIIYEVDDPS---LPNDEGITALHNAVCAGHTEI-VKFL------VQFGVN 95

Query: 195 -------GKTALHAAVCSRSCAASRCHK 215
                  G T LH       CAAS  + 
Sbjct: 96  VNAADSDGWTPLH-------CAASCNNV 116

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 75.0 bits (185), Expect = 3e-16
 Identities = 29/141 (20%), Positives = 51/141 (36%), Gaps = 35/141 (24%)

Query: 74  VNAK--GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTA 131
           V       A L  ++  G   +V+ +I    +  D  +               NDE  TA
Sbjct: 31  VKFNPLPLALLLDSSLEGEFDLVQRIIY---EVDDPSL--------------PNDEGITA 73

Query: 132 LHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEI-------SAEIL 182
           LH AV +G  ++VK L+  G +     +A+  G TPL+ AA+  + ++        A + 
Sbjct: 74  LHNAVCAGHTEIVKFLVQFGVN---VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF 130

Query: 183 QKCPSPAHEGPNGKTALHAAV 203
                  +            +
Sbjct: 131 AMT----YSDMQTAADKCEEM 147

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 72.3 bits (178), Expect = 2e-15
 Identities = 38/215 (17%), Positives = 64/215 (29%), Gaps = 61/215 (28%)

Query: 5   LYEAAAKGEIEPFNQLAIDRQLGSLVTHKKN---TVLHVNIIASYTQNKEGESVSTKFVE 61
           L +++ +GE +   ++ I        +   +   T LH    A    + E          
Sbjct: 41  LLDSSLEGEFDLVQRI-IYE--VDDPSLPNDEGITALH---NAVCAGHTE---------- 84

Query: 62  RIIEMCPSLLLQ----VNAK---GDAPLHVAARYGHAAVVEALIEI-----AKQESDQEI 109
            I++     L+Q    VNA    G  PLH AA   +  V + L+E      A   SD + 
Sbjct: 85  -IVK----FLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQ- 138

Query: 110 ESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLY 167
                 TA                E ++ G     + L             N      L+
Sbjct: 139 ------TA------------ADKCEEMEEGYTQCSQFLYGVQEKMG---IMNKGVIYALW 177

Query: 168 LAAARAHKEISAEILQKCPSPAHEGPNGKTALHAA 202
               +   E+  +    C +  H     +     A
Sbjct: 178 DYEPQNDDELPMKEGD-CMTIIHREDEDEIEWWWA 211

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 38.7 bits (91), Expect = 8e-04
 Identities = 12/108 (11%), Positives = 21/108 (19%), Gaps = 25/108 (23%)

Query: 74  VNAK------GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDE 127
           V A         A        G+    + L      +    I               N  
Sbjct: 129 VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG---VQEKMGI--------------MNKG 171

Query: 128 EDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHK 175
              AL +       ++   +   D           E   + A     +
Sbjct: 172 VIYALWDYEPQNDDELP--MKEGDCMTIIHREDEDEIEWWWARLNDKE 217

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 75.2 bits (185), Expect = 4e-16
 Identities = 46/209 (22%), Positives = 70/209 (33%), Gaps = 27/209 (12%)

Query: 5   LYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKE--------GESVS 56
           L + A K +       A          +K  T LH   IA   +N          G  V 
Sbjct: 76  LLDVARKTDSLKQFVNASYTD----SYYKGQTALH---IAIERRNMTLVTLLVENGADVQ 128

Query: 57  TKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVEST 116
                       +        G+ PL +AA     A+V+ L++ + Q +D      V +T
Sbjct: 129 AA--ANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNT 186

Query: 117 ARHMLGM--KNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAH 174
             H L     N  ++T    ++ +  L +    L          N  G TPL LAA+   
Sbjct: 187 VLHALVEVADNTVDNTKFVTSMYNEILILGA-KLHPTLKLEEITNRKGLTPLALAASSGK 245

Query: 175 KEISAEILQKCPSPAHEGPNGKTALHAAV 203
             + A ILQ+         +     HAA 
Sbjct: 246 IGVLAYILQR-------EIHEPECRHAAA 267

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 61.0 bits (148), Expect = 3e-11
 Identities = 23/158 (14%), Positives = 47/158 (29%), Gaps = 38/158 (24%)

Query: 75  NAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHE 134
                  +  A    +   +E+L+   ++   +      +S  +       +   T L +
Sbjct: 10  RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKR----LTDSEFK-----DPETGKTCLLK 60

Query: 135 AV---QSGSLDVVKILL--GADP--------AFPYSANGSGETPLYLAAARAHKEISAEI 181
           A+    +G  D + +LL              A    +   G+T L++A  R +  +   +
Sbjct: 61  AMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTL-VTL 119

Query: 182 L---------------QKCPSPAHEGPNGKTALHAAVC 204
           L                K          G+  L  A C
Sbjct: 120 LVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAAC 157

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 20/107 (18%), Positives = 34/107 (31%), Gaps = 25/107 (23%)

Query: 124 KNDEEDTALHEAVQSGSLDVVKILL---------GADPAFPYSANGSGETPLYLAAARA- 173
               +  ++ +AV   +   ++ LL           D  F      +G+T L  A     
Sbjct: 9   PRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEF--KDPETGKTCLLKAMLNLH 66

Query: 174 --HKEISAEILQKCP-----------SPAHEGPNGKTALHAAVCSRS 207
               +  A +L               S       G+TALH A+  R+
Sbjct: 67  NGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRN 113

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 69.9 bits (171), Expect = 2e-14
 Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 21/133 (15%)

Query: 74  VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDT 130
                      LH A   GH  +VE L           ++ GV          K+D   +
Sbjct: 33  ATRTDQDSRTALHWACSAGHTEIVEFL-----------LQLGVPVND------KDDAGWS 75

Query: 131 ALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAH 190
            LH A  +G  ++VK LL    A   + N +G TPL+ AA++   EI+  +L+   +P  
Sbjct: 76  PLHIAASAGXDEIVKALLVKG-AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA 134

Query: 191 EGPNGKTALHAAV 203
           +     TA+H A 
Sbjct: 135 KDHYDATAMHRAA 147

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 68.0 bits (166), Expect = 8e-14
 Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 22/128 (17%)

Query: 78  GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQ 137
                ++A       + E ++                +T        + +  TALH A  
Sbjct: 7   NIMICNLAYSGKLDELKERILA-----------DKSLATR------TDQDSRTALHWACS 49

Query: 138 SGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNG 195
           +G  ++V+ LL  G         + +G +PL++AA+    EI   +L K         NG
Sbjct: 50  AGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNG 106

Query: 196 KTALHAAV 203
            T LH A 
Sbjct: 107 CTPLHYAA 114

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 61.0 bits (148), Expect = 2e-11
 Identities = 50/193 (25%), Positives = 70/193 (36%), Gaps = 42/193 (21%)

Query: 33  KKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ----VNAK---GDAPLHVA 85
              T LH    A    + E           I+E     LLQ    VN K   G +PLH+A
Sbjct: 39  DSRTALH---WACSAGHTE-----------IVE----FLLQLGVPVNDKDDAGWSPLHIA 80

Query: 86  ARYGHAAVVEALIEIAKQESDQE----------IESGVESTARHMLG------MKNDEED 129
           A  G   +V+AL+      +                     A  +L        K+  + 
Sbjct: 81  ASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA 140

Query: 130 TALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPA 189
           TA+H A   G+L +V ILL    A     +  G TPL+LA      E +  ++ +  S  
Sbjct: 141 TAMHRAAAKGNLKMVHILLFYK-ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIY 199

Query: 190 HEGPNGKTALHAA 202
            E    KT L  A
Sbjct: 200 IENKEEKTPLQVA 212

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 51.8 bits (124), Expect = 4e-08
 Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 7/83 (8%)

Query: 124 KNDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEI 181
                    + A      ++ + +L   +        +    T L+ A +  H EI  E 
Sbjct: 3   GCVSNIMICNLAYSGKLDELKERILADKSLAT---RTDQDSRTALHWACSAGHTEI-VEF 58

Query: 182 L-QKCPSPAHEGPNGKTALHAAV 203
           L Q       +   G + LH A 
Sbjct: 59  LLQLGVPVNDKDDAGWSPLHIAA 81

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 68.4 bits (167), Expect = 2e-13
 Identities = 24/132 (18%), Positives = 39/132 (29%), Gaps = 17/132 (12%)

Query: 74  VNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALH 133
           + A+      +AA  GH  V+  L E+A                  ++ M   E   A  
Sbjct: 124 IQAENYQAFRLAAENGHLHVLNRLCELA---------------PTEIMAMIQAENYHAFR 168

Query: 134 EAVQSGSLDVVKILLGADPAFPYS-ANGSGETPLYLAAARA-HKEISAEILQKCPSPAHE 191
            A ++G L V+  L    P    +            AA    H  +   +L      A+ 
Sbjct: 169 LAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYA 228

Query: 192 GPNGKTALHAAV 203
             +        V
Sbjct: 229 EIHEFEYGEKYV 240

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 61.5 bits (149), Expect = 4e-11
 Identities = 22/138 (15%), Positives = 39/138 (28%), Gaps = 19/138 (13%)

Query: 69  SLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEE 128
           S   +   K +    VAA  G ++ ++ L  +   +   +              +   E 
Sbjct: 83  SDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVK--------------VIQAEN 128

Query: 129 DTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCP 186
             A   A ++G L V+  L                      LAA   H  +   + +  P
Sbjct: 129 YQAFRLAAENGHLHVLNRLCELAPTEIMAMIQA-ENYHAFRLAAENGHLHVLNRLCELAP 187

Query: 187 SPAHE--GPNGKTALHAA 202
           + A          A   A
Sbjct: 188 TEATAMIQAENYYAFRWA 205

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 48.8 bits (116), Expect = 7e-07
 Identities = 12/102 (11%), Positives = 31/102 (30%), Gaps = 13/102 (12%)

Query: 76  AKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEA 135
            +G   L    R     +++ +  +    S   I++               + +  L  A
Sbjct: 276 LQGFYMLRNLIRRNDEVLLDDIRFLL---SIPGIKALAP------TATIPGDANELLRLA 326

Query: 136 VQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEI 177
           ++ G+     +LL    + P     +     Y+       ++
Sbjct: 327 LRLGNQGACALLL----SIPSVLALTKANNYYINETGGRLDL 364

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 46.9 bits (111), Expect = 3e-06
 Identities = 10/75 (13%), Positives = 20/75 (26%), Gaps = 20/75 (26%)

Query: 74  VNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALH 133
           +    +  L +A R G+      L+ I                      +    +    +
Sbjct: 315 IPGDANELLRLALRLGNQGACALLLSIP--------------------SVLALTKANNYY 354

Query: 134 EAVQSGSLDVVKILL 148
                G LD+  + L
Sbjct: 355 INETGGRLDLRAVAL 369

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 46.1 bits (109), Expect = 5e-06
 Identities = 17/143 (11%), Positives = 34/143 (23%), Gaps = 13/143 (9%)

Query: 70  LLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEED 129
            LL               YG   V   +     +  +      + +       +   E  
Sbjct: 217 FLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECL 276

Query: 130 ---TALHEAVQSGSLDVVKIL--LGADPAFPYSAN-----GSGETPLYLAAARAHKEISA 179
                L   ++     ++  +  L + P     A      G     L LA    ++   A
Sbjct: 277 QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACA 336

Query: 180 EILQKCPSPAHEGPNGKTALHAA 202
            +L     P+          +  
Sbjct: 337 LLLSI---PSVLALTKANNYYIN 356

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 65.1 bits (159), Expect = 4e-13
 Identities = 27/200 (13%), Positives = 57/200 (28%), Gaps = 54/200 (27%)

Query: 5   LYEAAAKGEIEPFNQL----AIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFV 60
           +  AA  G  E F +L      D+      +  K+ +L+         N E     + F 
Sbjct: 10  VSAAAMLGTYEDFLELFEKGYEDK-----ESVLKSNILY---DVLRNNNDEARYKISMF- 60

Query: 61  ERIIEMCPSLLLQ----VNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGV 113
                     L+     + ++   G        + G   +     E+ K      +E G 
Sbjct: 61  ----------LINKGADIKSRTKEGTTLFFPLFQGGGNDITGTT-ELCKIF----LEKGA 105

Query: 114 ESTARHMLGMKNDEEDTALHEAVQSGSLD------VVKILL---GADPAFPYSANGSGET 164
           + TA              + + + +  +D      + K++    G         +  G T
Sbjct: 106 DITA------LYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL---IKDKWGLT 156

Query: 165 PLYLAAARAHKEISAEILQK 184
            L             ++++ 
Sbjct: 157 ALEFVKRCQKPIA-LKMMED 175

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 59.7 bits (145), Expect = 3e-11
 Identities = 25/164 (15%), Positives = 42/164 (25%), Gaps = 38/164 (23%)

Query: 75  NAKGD-APLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGM---------- 123
           NA  +   +  AA  G       L E   ++ +  ++S +                    
Sbjct: 2   NAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFL 61

Query: 124 ---------KNDEEDTALHEAVQSGSLDV------VKILL--GADPAFPYSANGSGETPL 166
                    +  E  T      Q G  D+       KI L  GAD     +     +  +
Sbjct: 62  INKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT---ALYKPYKIVV 118

Query: 167 YLAAARAHKEISAEILQKCPSPAHEGPN-------GKTALHAAV 203
           +        + +  I       +  G         G TAL    
Sbjct: 119 FKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVK 162

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 51.2 bits (123), Expect = 4e-08
 Identities = 17/131 (12%), Positives = 35/131 (26%), Gaps = 29/131 (22%)

Query: 30  VTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ---VNAK---GDAPLH 83
            T +  T+             +        +    E+C   L +   + A        + 
Sbjct: 71  RTKEGTTLFF---PLFQGGGND--------ITGTTELCKIFLEKGADITALYKPYKIVVF 119

Query: 84  VAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDV 143
                      E +I + K    Q    G++      L +K+    TAL    +      
Sbjct: 120 KNIFNYFVDENE-MIPLYKLIFSQS---GLQ------LLIKDKWGLTALEFVKRCQKPIA 169

Query: 144 VKILL--GADP 152
           +K++       
Sbjct: 170 LKMMEDYIKKY 180

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 12/91 (13%), Positives = 20/91 (21%), Gaps = 9/91 (9%)

Query: 127 EEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQK 184
            E   +  A   G+ +    L   G +       +      L      A  +IS  ++ K
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64

Query: 185 CPSPAHEGPNGKTALHAAVCSRSCAASRCHK 215
                     G T                  
Sbjct: 65  GADIKSRTKEGTTLFF-------PLFQGGGN 88

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 55.0 bits (132), Expect = 5e-09
 Identities = 26/141 (18%), Positives = 51/141 (36%), Gaps = 17/141 (12%)

Query: 32  HKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHA 91
               T+LH   I   +      + +  +++ ++        +    G           + 
Sbjct: 199 SMNRTILH--HIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNG 256

Query: 92  AVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILL--G 149
              ++++E    +               ML  ++   DT L+ A + G++ +V  LL  G
Sbjct: 257 ERKDSILENLDLKWIIAN----------MLNAQDSNGDTCLNIAARLGNISIVDALLDYG 306

Query: 150 ADPAFPYSANGSGETPLYLAA 170
           AD   P+ AN SG  P+   A
Sbjct: 307 AD---PFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 48.9 bits (116), Expect = 5e-07
 Identities = 18/128 (14%), Positives = 39/128 (30%), Gaps = 24/128 (18%)

Query: 63  IIEMCPSLLLQVNAKGDA----PLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTAR 118
           + +  P+  L +N   D     PLH      +  +V+ L           ++ G      
Sbjct: 112 VNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHL-----------VKHGSNRLY- 159

Query: 119 HMLGMKNDEEDTALHEAVQSG---SLDVVKILLGADPAFPYSANGSGETPLYLAAARAHK 175
                 ++  ++ L +AV+S         + LL          +    T L+     +  
Sbjct: 160 -----GDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGM 214

Query: 176 EISAEILQ 183
              +   +
Sbjct: 215 TGCSAAAK 222

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 47.7 bits (113), Expect = 1e-06
 Identities = 23/169 (13%), Positives = 51/169 (30%), Gaps = 11/169 (6%)

Query: 36  TVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVE 95
           + L          N +  +      E +++     L+  ++     LH          + 
Sbjct: 166 SCLV--KAVKSVNNYDSGTF-----EALLDYLYPCLILEDSMNRTILHHIIITSG---MT 215

Query: 96  ALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADP-AF 154
                AK   D  +   V+   R +    N++E     +  +     +  + L       
Sbjct: 216 GCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM 275

Query: 155 PYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAV 203
             + + +G+T L +AA   +  I   +L     P     +G   +    
Sbjct: 276 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 46.2 bits (109), Expect = 4e-06
 Identities = 20/121 (16%), Positives = 44/121 (36%), Gaps = 4/121 (3%)

Query: 95  EALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILL--GADP 152
           EA ++       QE+ + + + + +             H +  S   +V         + 
Sbjct: 64  EAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNL 123

Query: 153 AFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASR 212
             P   +  G TPL+   + A+ E+   +++   +  +    G++ L  AV S +   S 
Sbjct: 124 NIPV--DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSG 181

Query: 213 C 213
            
Sbjct: 182 T 182

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 40.8 bits (95), Expect = 3e-04
 Identities = 26/195 (13%), Positives = 54/195 (27%), Gaps = 53/195 (27%)

Query: 35  NTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ----VNAK---GDAPLHVAAR 87
           NT LH     +   N E           +++     L++           G++ L  A +
Sbjct: 132 NTPLH---WLTSIANLE-----------LVK----HLVKHGSNRLYGDNMGESCLVKAVK 173

Query: 88  YGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGS------- 140
             +         +        ++          L +++    T LH  + +         
Sbjct: 174 SVNNYDSGTFEAL--------LDYLYPC-----LILEDSMNRTILHHIIITSGMTGCSAA 220

Query: 141 ----LDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPA----HEG 192
               LD++   +      P  +  + +           K+   E L      A     + 
Sbjct: 221 AKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQD 280

Query: 193 PNGKTALHAAVCSRS 207
            NG T L+ A    +
Sbjct: 281 SNGDTCLNIAARLGN 295

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 52.7 bits (126), Expect = 3e-08
 Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 20/111 (18%)

Query: 77  KGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAV 136
             +  LH+A R      +  +++   Q S               L  +  +  TALH   
Sbjct: 168 PDETALHLAVRSVDRTSL-HIVDFLVQNSGN-------------LDKQTGKGSTALHYCC 213

Query: 137 QSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKC 185
            + + + +K+LL   A       AN SGETPL +A    H+    E+L + 
Sbjct: 214 LTDNAECLKLLLRGKASIE---IANESGETPLDIAKRLKHEHC-EELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 46.1 bits (109), Expect = 3e-06
 Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 2/95 (2%)

Query: 111 SGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKI--LLGADPAFPYSANGSGETPLYL 168
            GV+ T +  L   ++ ++TALH AV+S     + I   L  +        G G T L+ 
Sbjct: 152 DGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY 211

Query: 169 AAARAHKEISAEILQKCPSPAHEGPNGKTALHAAV 203
                + E    +L+   S      +G+T L  A 
Sbjct: 212 CCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 246

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 50.4 bits (120), Expect = 1e-07
 Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 20/122 (16%)

Query: 66  MCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKN 125
             P       A  +  LH+A +  + A +  L++   Q                 L  K 
Sbjct: 178 GQPLPGPDAQAPEELVLHLAVKVANQASL-PLVDFIIQNGGH-------------LDAKA 223

Query: 126 DEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQ 183
            + +TALH A      D +K+LL   A      + N +GET L +A  + HKE   E+L+
Sbjct: 224 ADGNTALHYAALYNQPDCLKLLLKGRALV---GTVNEAGETALDIARKKHHKEC-EELLE 279

Query: 184 KC 185
           + 
Sbjct: 280 QA 281

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 2/95 (2%)

Query: 111 SGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKI--LLGADPAFPYSANGSGETPLYL 168
           +G +             E+  LH AV+  +   + +   +  +     +    G T L+ 
Sbjct: 173 NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY 232

Query: 169 AAARAHKEISAEILQKCPSPAHEGPNGKTALHAAV 203
           AA     +    +L+           G+TAL  A 
Sbjct: 233 AALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR 267

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 48.0 bits (114), Expect = 1e-06
 Identities = 31/125 (24%), Positives = 48/125 (38%), Gaps = 26/125 (20%)

Query: 66  MCPSLLLQVNAKGDAPLHVAARY---GHAAVVEALIEIAKQESDQEIESGVESTARHMLG 122
             P       A  +  LH+A +        +V+ +I    Q                 L 
Sbjct: 159 GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFII----QNGGH-------------LD 201

Query: 123 MKNDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAE 180
            K  + +TALH A      D +K+LL   A      + N +GET L +A  + HKE   E
Sbjct: 202 AKAADGNTALHYAALYNQPDCLKLLLKGRAL---VGTVNEAGETALDIARKKHHKEC-EE 257

Query: 181 ILQKC 185
           +L++ 
Sbjct: 258 LLEQA 262

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 42.5 bits (99), Expect = 7e-05
 Identities = 24/130 (18%), Positives = 42/130 (32%), Gaps = 8/130 (6%)

Query: 125 NDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEIL 182
             +  T L +A  + SL   + LL  GA+       + +G  PL+ A    H  ++   L
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGANVNQA---DSAGRGPLHHATILGHTGLACLFL 288

Query: 183 QKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSSRFLPSPRSCLIPNSTTTSLFAL 242
           ++          G+  L  A      A +    L R ++   +  +       T      
Sbjct: 289 KRGADLGARDSEGRDPLTIA---METANADIVTLLRLAKMREAEAAQGQAGDETYLDIFR 345

Query: 243 IPSHTRLSHP 252
             S      P
Sbjct: 346 DFSLMASDDP 355

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 8e-04
 Identities = 36/233 (15%), Positives = 63/233 (27%), Gaps = 74/233 (31%)

Query: 87  RYGHAAVVEALIEIAKQESD----QEIESGVESTA--RHMLGMKNDEEDTAL-------- 132
           +Y +  ++    +      D    Q++   + S     H++  K+    T          
Sbjct: 15  QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74

Query: 133 -HEAVQSGSLDVVKILLGADPAFPYSA------NGSGETPLYLAA--------------- 170
             E VQ      V+ +L  +  F  S         S  T +Y+                 
Sbjct: 75  QEEMVQ----KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130

Query: 171 -ARAHKEISAEILQKCPSPAHEGPN---------GKTALHAAVCSRSCAASRCHKLHRSS 220
            +R    +    L++         N         GKT +   VC         +K+    
Sbjct: 131 VSRLQPYLK---LRQALLELRPAKNVLIDGVLGSGKTWVALDVC-------LSYKVQCKM 180

Query: 221 RF---------LPSPRSCLIPNSTTTSLFALI--PSHTRLSHPMNRSVNISWV 262
            F           SP + L        L   I     +R  H  N  + I  +
Sbjct: 181 DFKIFWLNLKNCNSPETVLEM---LQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	264
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.98
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.98
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.98
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.98
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.98
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.97
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.97
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.96
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.96
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.95
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.95
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.94
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.94
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.94
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.94
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.94
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.94
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.94
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.93
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.93
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.93
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.92
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.92
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.92
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.92
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.91
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.91
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.91
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.91
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.91
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.9
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.89
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.88
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.88
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.88
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.88
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.88
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.87
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.87
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.84
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.8
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.78

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=3.5e-37  Score=240.18  Aligned_cols=192  Identities=21%  Similarity=0.171  Sum_probs=179.0

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChH
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAP   81 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~   81 (264)
                      .||||+|+..|+.+++++|++.+...+..+..|.||||+|+  ..|+        .+++++|++.++..++..+..|.||
T Consensus        26 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~--------~~~v~~Ll~~~~~~~~~~~~~g~t~   95 (223)
T 2f8y_A           26 ETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV--SADA--------QGVFQILIRNRATDLDARMHDGTTP   95 (223)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--HTTC--------HHHHHHHHHBTTSCTTCCCTTCCCH
T ss_pred             CchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH--HcCC--------HHHHHHHHHcCCCCcccCCCCCCcH
Confidence            58999999999999999999954444558999999999999  9999        9999999999986688899999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCC
Q 047844           82 LHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGS  161 (264)
Q Consensus        82 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~  161 (264)
                      ||+|+..|+.+++++|++.|++++.                 ++..|.||||+|+..|+.+++++|++.|+++ +..|..
T Consensus        96 L~~A~~~~~~~~~~~Ll~~g~~~~~-----------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~  157 (223)
T 2f8y_A           96 LILAARLAVEGMLEDLINSHADVNA-----------------VDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNR  157 (223)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTC-----------------BCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred             HHHHHHhCcHHHHHHHHHcCCCCcC-----------------cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCC
Confidence            9999999999999999999887544                 8889999999999999999999999999996 788999


Q ss_pred             CCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhCCC
Q 047844          162 GETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSSR  221 (264)
Q Consensus       162 g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~  221 (264)
                      |.||||+|+..++.+++++|+++|++++.++..|.||+++|+..++.+++++|+.+++..
T Consensus       158 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~  217 (223)
T 2f8y_A          158 EETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR  217 (223)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSS
T ss_pred             CcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCc
Confidence            999999999999999999999999999999999999999999999999999999988654

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=3.1e-37  Score=241.93  Aligned_cols=205  Identities=18%  Similarity=0.134  Sum_probs=178.2

Q ss_pred             CcHHHHHHHcCCchHHhhhhhh-cccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccc----eecCC
Q 047844            2 NSDLYEAAAKGEIEPFNQLAID-RQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLL----LQVNA   76 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~-~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~----~~~~~   76 (264)
                      +||||+|+..|+.+++++|++. +...+..|..|.||||+|+  ..|+        .+++++|++.+++..    +..|.
T Consensus         4 ~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~--~~g~--------~~~v~~Ll~~~~~~~~~~~~~~~~   73 (232)
T 2rfa_A            4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAA--LYDN--------LEAAMVLMEAAPELVFEPMTSELY   73 (232)
T ss_dssp             TCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHH--HTTC--------HHHHHHHHHHCGGGGGCCCCSTTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHH--HcCC--------HHHHHHHHHcCchhccccccccCC
Confidence            5899999999999999999984 5555568999999999999  9999        999999999998843    56678


Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCC
Q 047844           77 KGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPY  156 (264)
Q Consensus        77 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~  156 (264)
                      .|.||||+|+..|+.+++++|++.|++++..+....    .....+..+..|.||||+|+..|+.+++++|++.|+++ +
T Consensus        74 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~----~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~  148 (232)
T 2rfa_A           74 EGQTALHIAVINQNVNLVRALLARGASVSARATGSV----FHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI-R  148 (232)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGG----GSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCT-T
T ss_pred             CCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcc----eeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCC-C
Confidence            999999999999999999999999988765321110    01112334568999999999999999999999999996 7


Q ss_pred             CCCCCCCCHHHHHHHhChHHHH----HHHHhhCCCC------CcCCCCCccHHhHHHhcCChHHHHHHHhhhCCC
Q 047844          157 SANGSGETPLYLAAARAHKEIS----AEILQKCPSP------AHEGPNGKTALHAAVCSRSCAASRCHKLHRSSR  221 (264)
Q Consensus       157 ~~~~~g~t~Lh~A~~~~~~~~~----~~Ll~~ga~~------~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~  221 (264)
                      .+|..|+||||+|+..++.+++    ++|+++|++.      +.+|..|.||||+|+..|+.+++++|+.++...
T Consensus       149 ~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~  223 (232)
T 2rfa_A          149 AQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHI  223 (232)
T ss_dssp             CCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             CCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence            8999999999999999999988    9999999988      589999999999999999999999999988543

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=2e-37  Score=249.66  Aligned_cols=208  Identities=20%  Similarity=0.223  Sum_probs=178.9

Q ss_pred             CcHHHHHHHcCCchHHhhhhh---hcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCC
Q 047844            2 NSDLYEAAAKGEIEPFNQLAI---DRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKG   78 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~---~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g   78 (264)
                      .||||+||..|+.+++++|++   +.+..+..+..|.||||+|+  ..|+        .+++++|++.+.+ ++..+..|
T Consensus        10 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~--~~g~--------~~~v~~Ll~~ga~-~~~~~~~g   78 (282)
T 1oy3_D           10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAA--ILGE--------ASTVEKLYAAGAG-VLVAERGG   78 (282)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHH--HHTC--------HHHHHHHHHTTCC-SSCCCTTS
T ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHH--HcCC--------HHHHHHHHHcCCC-CCCCCCCC
Confidence            589999999999999999998   32234558999999999999  9999        9999999999999 78899999


Q ss_pred             ChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhc------------------------------hhhHHHHHhcCCCCCC
Q 047844           79 DAPLHVAARYGHAAVVEALIEIAKQESDQEIESG------------------------------VESTARHMLGMKNDEE  128 (264)
Q Consensus        79 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~------------------------------~~~~~~~~l~~~~~~g  128 (264)
                      +||||+|+..|+.+++++|++.++..........                              ........++.++..|
T Consensus        79 ~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  158 (282)
T 1oy3_D           79 HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDG  158 (282)
T ss_dssp             CCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTS
T ss_pred             CCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCC
Confidence            9999999999999999999998765322110000                              0001123367788999


Q ss_pred             CChhhHHHhcCCHHHHHHHhcCCCCCCCCCC-CCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCC
Q 047844          129 DTALHEAVQSGSLDVVKILLGADPAFPYSAN-GSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRS  207 (264)
Q Consensus       129 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~  207 (264)
                      .||||+|+..|+.+++++|++.|+++ +..+ ..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++
T Consensus       159 ~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~  237 (282)
T 1oy3_D          159 HTPLHVAVIHKDAEMVRLLRDAGADL-NKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPN  237 (282)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSC
T ss_pred             cCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCC
Confidence            99999999999999999999999997 4555 459999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhhCCC
Q 047844          208 CAASRCHKLHRSSR  221 (264)
Q Consensus       208 ~~~~~~l~~~~~~~  221 (264)
                      .+++++|+.+++..
T Consensus       238 ~~~v~~Ll~~ga~~  251 (282)
T 1oy3_D          238 PILARLLRAHGAPE  251 (282)
T ss_dssp             HHHHHHHHHTTCCC
T ss_pred             cHHHHHHHHcCCCc
Confidence            99999999998754

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=4e-37  Score=244.61  Aligned_cols=189  Identities=21%  Similarity=0.188  Sum_probs=174.3

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChH
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAP   81 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~   81 (264)
                      .||||+|+..|+.+++++|++.+...+..+..|.||||+|+  ..|+        .+++++|++.+...++..+..|.||
T Consensus        58 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~--------~~~v~~Ll~~~~~~~~~~~~~g~t~  127 (253)
T 1yyh_A           58 ETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV--SADA--------QGVFQILIRNRATDLDARMHDGTTP  127 (253)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--HHTC--------HHHHHHHHHSTTSCTTCCCTTCCCH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH--HcCC--------HHHHHHHHHcCCCCccccCCCCCcH
Confidence            48999999999999999999944444457899999999999  9999        9999999999985588899999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCC
Q 047844           82 LHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGS  161 (264)
Q Consensus        82 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~  161 (264)
                      ||+|+..|+.+++++|++.|++++.                 ++..|.||||+|+..|+.+++++|++.|+++ +..|..
T Consensus       128 L~~A~~~~~~~~v~~Ll~~g~~~~~-----------------~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~  189 (253)
T 1yyh_A          128 LILAARLAVEGMLEDLINSHADVNA-----------------VDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNR  189 (253)
T ss_dssp             HHHHHHHTCSSHHHHHHHTTCCTTC-----------------BCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred             HHHHHHcChHHHHHHHHHcCCCCCC-----------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCC
Confidence            9999999999999999999988544                 8899999999999999999999999999996 788999


Q ss_pred             CCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhh
Q 047844          162 GETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHR  218 (264)
Q Consensus       162 g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~  218 (264)
                      |.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..|+.+++++|....
T Consensus       190 g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~  246 (253)
T 1yyh_A          190 EETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEH  246 (253)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC--
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999997764

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=2.1e-36  Score=236.99  Aligned_cols=191  Identities=21%  Similarity=0.260  Sum_probs=177.4

Q ss_pred             CcHHHHHHHcCCchHHhhhhh-hcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCCh
Q 047844            2 NSDLYEAAAKGEIEPFNQLAI-DRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDA   80 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~-~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t   80 (264)
                      ++|||.|+..|+++.++.|++ .+...+..+..|.||||+|+  ..|+        .+++++|++.+.+ ++..|..|+|
T Consensus         7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~--~~g~--------~~~v~~Ll~~g~~-~~~~~~~g~t   75 (231)
T 3aji_A            7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWAC--SAGH--------TEIVEFLLQLGVP-VNDKDDAGWS   75 (231)
T ss_dssp             SSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHH--HHTC--------HHHHHHHHHTTCC-SCCCCTTSCC
T ss_pred             cchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHH--HcCc--------HHHHHHHHHhCCC-CCCcCCCCCC
Confidence            689999999999999999998 44444557999999999999  9999        9999999999988 7889999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCC
Q 047844           81 PLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANG  160 (264)
Q Consensus        81 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  160 (264)
                      |||+|+..|+.+++++|++.|++++.                 ++..|.||||+|+..|+.+++++|++.|+++ +..+.
T Consensus        76 ~L~~A~~~~~~~~v~~Ll~~g~~~~~-----------------~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~  137 (231)
T 3aji_A           76 PLHIAASAGXDEIVKALLVKGAHVNA-----------------VNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDH  137 (231)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTC-----------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT
T ss_pred             HHHHHHHcCHHHHHHHHHHcCCCCCC-----------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCC
Confidence            99999999999999999999987544                 8889999999999999999999999999995 78899


Q ss_pred             CCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhCCC
Q 047844          161 SGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSSR  221 (264)
Q Consensus       161 ~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~  221 (264)
                      .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+.+++..
T Consensus       138 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  198 (231)
T 3aji_A          138 YDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI  198 (231)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999987653

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=2.7e-36  Score=235.83  Aligned_cols=193  Identities=18%  Similarity=0.163  Sum_probs=173.8

Q ss_pred             CcHHHHHHHcCCchHHhhhhh-hcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhC--CccceecCCCC
Q 047844            2 NSDLYEAAAKGEIEPFNQLAI-DRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMC--PSLLLQVNAKG   78 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~-~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~--~~~~~~~~~~g   78 (264)
                      +||||+||..|+.+++++|++ ..+.....+..|.||||+|+  ..|+        .+++++|++.+  .+.....+..|
T Consensus         3 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~--~~~~--------~~~v~~Ll~~~~~~~~~~~~~~~g   72 (228)
T 2dzn_A            3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSV--SFQA--------HEITSFLLSKMENVNLDDYPDDSG   72 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHH--HTTC--------HHHHHHHHHTCTTCCGGGCCCTTS
T ss_pred             ccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHH--HcCC--------HHHHHHHHhccccccccccCCCCC
Confidence            689999999999999999998 34444447899999999999  9999        99999999999  55333378999


Q ss_pred             ChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCC
Q 047844           79 DAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSA  158 (264)
Q Consensus        79 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~  158 (264)
                      +||||+|+..|+.+++++|++.|...+               ++..+..|.||||+|+..|+.+++++|++.|+++ +.+
T Consensus        73 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~---------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~  136 (228)
T 2dzn_A           73 WTPFHIACSVGNLEVVKSLYDRPLKPD---------------LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIK  136 (228)
T ss_dssp             CCHHHHHHHHCCHHHHHHHHSSSSCCC---------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCcc---------------cccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-ccc
Confidence            999999999999999999999983221               3448889999999999999999999999999995 788


Q ss_pred             CCCCCCHHHHHHHhChHHHHHHHHhhC-CCCCcCCCCCccHHhHHHhcCChHHHHHHH-hhhCC
Q 047844          159 NGSGETPLYLAAARAHKEISAEILQKC-PSPAHEGPNGKTALHAAVCSRSCAASRCHK-LHRSS  220 (264)
Q Consensus       159 ~~~g~t~Lh~A~~~~~~~~~~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~~~~l~-~~~~~  220 (264)
                      |..|+||||+|+..|+.+++++|++.| ++++.+|..|.||||+|+..++.+++++|+ .+++.
T Consensus       137 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~  200 (228)
T 2dzn_A          137 DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE  200 (228)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCC
Confidence            999999999999999999999999999 999999999999999999999999999999 77654

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=3.1e-36  Score=231.13  Aligned_cols=188  Identities=20%  Similarity=0.228  Sum_probs=171.7

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcc-cccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCCh
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQ-LGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDA   80 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~-~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t   80 (264)
                      .||||.|+..|+.+.++.|+.... ..+..+..|.||||+|+  ..|+        .+++++|++.+.+ ++..+..|.|
T Consensus         6 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~--~~~~--------~~~v~~Ll~~g~~-~~~~~~~g~t   74 (201)
T 3hra_A            6 VGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAV--HNND--------IEIAKALIDRGAD-INLQNSISDS   74 (201)
T ss_dssp             TTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHH--HHTC--------HHHHHHHHHTTCC-TTCCCTTSCC
T ss_pred             ccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHH--HcCC--------HHHHHHHHHcCCC-CCCCCCCCCC
Confidence            479999999999999999998322 44558899999999999  9999        9999999999998 7889999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHhh-hcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCC-CCCCCCC
Q 047844           81 PLHVAARYGHAAVVEALIEIAK-QESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGAD-PAFPYSA  158 (264)
Q Consensus        81 ~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~  158 (264)
                      |||+|+..|+.+++++|++.+. +                 ++..+..|.||||+|+..|+.+++++|++.| .+ .+..
T Consensus        75 ~l~~A~~~~~~~~~~~Ll~~~~~~-----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~  136 (201)
T 3hra_A           75 PYLYAGAQGRTEILAYMLKHATPD-----------------LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRED-IDFQ  136 (201)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCCC-----------------TTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCC-TTCC
T ss_pred             HHHHHHHcCCHHHHHHHHhccCcc-----------------cccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-cCCC
Confidence            9999999999999999996543 3                 3458889999999999999999999999999 66 4788


Q ss_pred             CCCCCCHHHHHHHhCh-----HHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhh
Q 047844          159 NGSGETPLYLAAARAH-----KEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHR  218 (264)
Q Consensus       159 ~~~g~t~Lh~A~~~~~-----~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~  218 (264)
                      |..|+||||+|+..++     .+++++|+++|++++.+|..|.||+|+|+..++.+++++|+.+|
T Consensus       137 ~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          137 NDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             CTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             CCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            9999999999999887     99999999999999999999999999999999999999998764

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.3e-36  Score=238.19  Aligned_cols=189  Identities=23%  Similarity=0.206  Sum_probs=176.4

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChH
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAP   81 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~   81 (264)
                      .||||+|+..|+.+++++|++.+...+..+..|.||||+|+  ..|+        .+++++|++.+.+ ++..+..|.||
T Consensus        41 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~--------~~~v~~Ll~~g~~-~~~~~~~g~t~  109 (231)
T 3aji_A           41 RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA--SAGX--------DEIVKALLVKGAH-VNAVNQNGCTP  109 (231)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH--HHTC--------HHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred             CCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHH--HcCH--------HHHHHHHHHcCCC-CCCCCCCCCCH
Confidence            58999999999999999999944444457899999999999  9999        9999999999998 78899999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCC
Q 047844           82 LHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGS  161 (264)
Q Consensus        82 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~  161 (264)
                      ||+|+..|+.+++++|++.|++++.                 ++..|.||||+|+..|+.+++++|++.|+++ +.+|..
T Consensus       110 L~~A~~~~~~~~~~~Ll~~g~~~~~-----------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~  171 (231)
T 3aji_A          110 LHYAASKNRHEIAVMLLEGGANPDA-----------------KDHYDATAMHRAAAKGNLKMVHILLFYKAST-NIQDTE  171 (231)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTC-----------------CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTT
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCC-----------------cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc-cccCCC
Confidence            9999999999999999999887544                 8889999999999999999999999999995 788999


Q ss_pred             CCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhC
Q 047844          162 GETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRS  219 (264)
Q Consensus       162 g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~  219 (264)
                      |+||||+|+..++.+++++|+++|++++.+|..|.||+++|+..++.+++++|..+++
T Consensus       172 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a  229 (231)
T 3aji_A          172 GNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEA  229 (231)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHccccc
Confidence            9999999999999999999999999999999999999999999999999999988764

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=4.7e-37  Score=241.63  Aligned_cols=198  Identities=18%  Similarity=0.165  Sum_probs=178.2

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhc----ccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCC
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDR----QLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAK   77 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~----~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~   77 (264)
                      .||||+|+..|+.+++++|++..    ...+..+..|.||||+|+  ..|+        .+++++|++.+.+ ++..+..
T Consensus         9 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~--~~~~--------~~~v~~Ll~~g~~-~~~~~~~   77 (236)
T 1ikn_D            9 DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAV--ITNQ--------PEIAEALLGAGCD-PELRDFR   77 (236)
T ss_dssp             CCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHH--HTTC--------HHHHHCCCSCCCC-SCCCCTT
T ss_pred             CchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHH--HcCC--------HHHHHHHHHcCCC-CCCcCCC
Confidence            58999999999999999999822    134558899999999999  9999        9999999999988 7889999


Q ss_pred             CChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCC
Q 047844           78 GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYS  157 (264)
Q Consensus        78 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~  157 (264)
                      |+||||+|+..|+.+++++|++.++.+..           ...++..+..|.||||+|+..|+.+++++|++.|+++ +.
T Consensus        78 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~-----------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~  145 (236)
T 1ikn_D           78 GNTPLHLACEQGCLASVGVLTQSCTTPHL-----------HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV-NA  145 (236)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHSTTTTSS-----------SCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCT-TC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhcccchhH-----------HHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CC
Confidence            99999999999999999999999876322           1124558889999999999999999999999999996 66


Q ss_pred             CCC-CCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhCCCC
Q 047844          158 ANG-SGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSSRF  222 (264)
Q Consensus       158 ~~~-~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~~  222 (264)
                      .+. .|+||||+|+..|+.+++++|+++|++++.++..|.||+++|+..++.+++++|+.+++...
T Consensus       146 ~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  211 (236)
T 1ikn_D          146 QEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL  211 (236)
T ss_dssp             CCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGG
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhh
Confidence            776 99999999999999999999999999999999999999999999999999999999987543

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=9.8e-36  Score=234.48  Aligned_cols=195  Identities=21%  Similarity=0.243  Sum_probs=176.3

Q ss_pred             CcHHHHHHHcCCchHHhhhhh----hcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCC
Q 047844            2 NSDLYEAAAKGEIEPFNQLAI----DRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAK   77 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~----~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~   77 (264)
                      +||||+||..|+.+++++|++    .+...+..+..|.||||+|+  ..|+        .+++++|++.+.+ ++..+..
T Consensus        10 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~--~~~~--------~~~v~~Ll~~g~~-~~~~~~~   78 (241)
T 1k1a_A           10 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAV--ITTL--------PSVVRLLVTAGAS-PMALDRH   78 (241)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHH--HTTC--------HHHHHHHHHTTCC-TTCCCTT
T ss_pred             CcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHH--HcCC--------HHHHHHHHHcCCC-ccccCCC
Confidence            589999999999999999997    34444557899999999999  9999        9999999999988 7888999


Q ss_pred             CChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCC
Q 047844           78 GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYS  157 (264)
Q Consensus        78 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~  157 (264)
                      |.||||+|+..|+.+++++|++.++....             .++..+..|.||||+|+..|+.+++++|++.|+++ +.
T Consensus        79 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~-------------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~  144 (241)
T 1k1a_A           79 GQTAAHLACEHRSPTCLRALLDSAAPGTL-------------DLEARNYDGLTALHVAVNTECQETVQLLLERGADI-DA  144 (241)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHSCTTSC-------------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCccc-------------cccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc-cc
Confidence            99999999999999999999999873211             13457889999999999999999999999999996 55


Q ss_pred             CC-CCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhCCC
Q 047844          158 AN-GSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSSR  221 (264)
Q Consensus       158 ~~-~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~  221 (264)
                      .+ ..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..++.+++++|+.+++..
T Consensus       145 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  209 (241)
T 1k1a_A          145 VDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADS  209 (241)
T ss_dssp             CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             ccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCC
Confidence            55 78999999999999999999999999999999999999999999999999999999988653

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.7e-36  Score=240.95  Aligned_cols=192  Identities=18%  Similarity=0.232  Sum_probs=154.4

Q ss_pred             CcHHHHHHHcC-------------CchHHhhhhhh-cccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhC
Q 047844            2 NSDLYEAAAKG-------------EIEPFNQLAID-RQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMC   67 (264)
Q Consensus         2 ~~~l~~A~~~g-------------~~~~~~~l~~~-~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~   67 (264)
                      .||||+|+..|             +.++++.|++. .+.....|..|.||||+|+  ..|+        .+++++|++.+
T Consensus        11 ~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~--~~g~--------~~~v~~Ll~~g   80 (253)
T 1yyh_A           11 FTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAA--RYSR--------SDAAKRLLEAS   80 (253)
T ss_dssp             -----------------------------------------CCCTTSCCHHHHHH--HTTC--------HHHHHHHHHTT
T ss_pred             CcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHH--HcCC--------HHHHHHHHHcC
Confidence            58999999987             89999999983 3332335889999999999  9999        99999999999


Q ss_pred             CccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHH
Q 047844           68 PSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKIL  147 (264)
Q Consensus        68 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~L  147 (264)
                      .+ ++..+..|+||||+|+..|+.+++++|++.+...                ++..+..|.||||+|+..|+.+++++|
T Consensus        81 ~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~L  143 (253)
T 1yyh_A           81 AD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD----------------LDARMHDGTTPLILAARLAVEGMLEDL  143 (253)
T ss_dssp             CC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSC----------------TTCCCTTCCCHHHHHHHHTCSSHHHHH
T ss_pred             CC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC----------------ccccCCCCCcHHHHHHHcChHHHHHHH
Confidence            98 7889999999999999999999999999988621                344888999999999999999999999


Q ss_pred             hcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhCCC
Q 047844          148 LGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSSR  221 (264)
Q Consensus       148 l~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~  221 (264)
                      ++.|+++ +..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+.+++..
T Consensus       144 l~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  216 (253)
T 1yyh_A          144 INSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANR  216 (253)
T ss_dssp             HHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             HHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc
Confidence            9999996 788999999999999999999999999999999999999999999999999999999999998654

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.2e-35  Score=233.63  Aligned_cols=191  Identities=20%  Similarity=0.169  Sum_probs=176.5

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChH
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAP   81 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~   81 (264)
                      .||||+|+..|+.+++++|++.+...+..+..|.||||.|+  ..|+        .+++++|++.+.+ ++..+..|.||
T Consensus        12 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~--------~~~v~~Ll~~g~~-~~~~~~~g~t~   80 (237)
T 3b7b_A           12 RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAA--ENNH--------LEAVKYLIKAGAL-VDPKDAEGSTC   80 (237)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH--HTTC--------HHHHHHHHTTTCC-CCCCCTTSCCH
T ss_pred             CCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHH--HhCC--------HHHHHHHHhCCCC-CCCCCCCCCcH
Confidence            58999999999999999999954444557899999999999  9999        9999999999988 78889999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHh-hhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCC
Q 047844           82 LHVAARYGHAAVVEALIEIA-KQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANG  160 (264)
Q Consensus        82 L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  160 (264)
                      ||+|+..|+.+++++|++.+ ..+                 +..+..|.||||+|+..|+.+++++|++.|+++ +..+.
T Consensus        81 L~~A~~~~~~~~~~~Ll~~~~~~~-----------------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~  142 (237)
T 3b7b_A           81 LHLAAKKGHYEVVQYLLSNGQMDV-----------------NCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDN  142 (237)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTCCCT-----------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCc-----------------ccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CccCC
Confidence            99999999999999999988 443                 347889999999999999999999999999996 78899


Q ss_pred             CCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhCCC
Q 047844          161 SGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSSR  221 (264)
Q Consensus       161 ~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~  221 (264)
                      .|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..++.+++++|+.+++..
T Consensus       143 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~  203 (237)
T 3b7b_A          143 EENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV  203 (237)
T ss_dssp             TSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCC
Confidence            9999999999999999999999999999999999999999999999999999999987643

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.6e-35  Score=238.14  Aligned_cols=188  Identities=20%  Similarity=0.201  Sum_probs=171.9

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChH
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAP   81 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~   81 (264)
                      .||||+||..|+.+++++|++.+...+..|..|.||||+|+  ..|+        .+++++|++.+.+ ++..|..|.||
T Consensus        60 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~g~--------~~~v~~Ll~~ga~-~~~~~~~g~t~  128 (285)
T 3d9h_A           60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEAC--LGGH--------LSCVKILLKHGAQ-VNGVTADWHTP  128 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHH--HTTC--------HHHHHHHHHTTCC-SSCCCTTCCCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH--HCCc--------HHHHHHHHHCCCC-CCCCCCCCCCH
Confidence            48999999999999999999944444558999999999999  9999        9999999999988 78899999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCC
Q 047844           82 LHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGS  161 (264)
Q Consensus        82 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~  161 (264)
                      ||+|+..|+.+++++|++.|++++.                  +..|.||||+|+..|+.+++++|++.|+++ +..|..
T Consensus       129 L~~A~~~~~~~~v~~Ll~~g~~~~~------------------~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~  189 (285)
T 3d9h_A          129 LFNACVSGSWDCVNLLLQHGASVQP------------------ESDLASPIHEAARRGHVECVNSLIAYGGNI-DHKISH  189 (285)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSSC------------------SCTTSCHHHHHHHHTCHHHHHHHHHTTCCT-TCCBTT
T ss_pred             HHHHHHcCHHHHHHHHHHCCCCCCC------------------CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCC
Confidence            9999999999999999999887542                  445899999999999999999999999995 788999


Q ss_pred             CCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhCC
Q 047844          162 GETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSS  220 (264)
Q Consensus       162 g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~  220 (264)
                      |+||||+|+..|+.+++++|++.|++++. +..|.||||+|+..++.+++++|+.+++.
T Consensus       190 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad  247 (285)
T 3d9h_A          190 LGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGAD  247 (285)
T ss_dssp             TBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            99999999999999999999999999994 88899999999999999999999998764

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.6e-36  Score=240.36  Aligned_cols=191  Identities=27%  Similarity=0.305  Sum_probs=145.0

Q ss_pred             cHHHHHHHcCCchHHhhhhhhcc--------cccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceec
Q 047844            3 SDLYEAAAKGEIEPFNQLAIDRQ--------LGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQV   74 (264)
Q Consensus         3 ~~l~~A~~~g~~~~~~~l~~~~~--------~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~   74 (264)
                      ++|+.||..|++++|++|++...        ..+..+..|.|||+.|+  ..++.       ..++++|++.|.+ ++..
T Consensus        13 ~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~--~~~~~-------~~~v~~Ll~~Gad-vn~~   82 (269)
T 4b93_B           13 EKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCP--KCAPA-------QKRLAKVPASGLG-VNVT   82 (269)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTCC-------------------------------------------------CCCC-TTCC
T ss_pred             hHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHH--HhCCH-------HHHHHHHHHCCCC-CCCc
Confidence            68999999999999999998211        23346778999999999  88771       3578999999998 7899


Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCC
Q 047844           75 NAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAF  154 (264)
Q Consensus        75 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~  154 (264)
                      |.+|+||||+|+..|+.+++++|++.++++..                 ++..|.||+++|+..++.+++++|++.|+++
T Consensus        83 d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~-----------------~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~  145 (269)
T 4b93_B           83 SQDGSSPLHVAALHGRADLIPLLLKHGANAGA-----------------RNADQAVPLHLACQQGHFQVVKCLLDSNAKP  145 (269)
T ss_dssp             CTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTC-----------------CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCc-----------------cCCCCCCccccccccChHHHHHHHHHCCCCC
Confidence            99999999999999999999999999988654                 7888999999999999999999999999985


Q ss_pred             CCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhCCC
Q 047844          155 PYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSSR  221 (264)
Q Consensus       155 ~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~  221 (264)
                       +.+|..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+.+++..
T Consensus       146 -n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~  211 (269)
T 4b93_B          146 -NKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASV  211 (269)
T ss_dssp             -CCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred             -CCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCC
Confidence             788899999999999999999999999999999999999999999999999999999999888653

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=5.6e-36  Score=235.84  Aligned_cols=189  Identities=17%  Similarity=0.154  Sum_probs=170.6

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCc---cceecCCCC
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPS---LLLQVNAKG   78 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~---~~~~~~~~g   78 (264)
                      .||||+|+..|+.+++++|++.+...+..+..|.||||+|+  ..|+        .+++++|++.+..   .++..+..|
T Consensus        47 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~--~~~~--------~~~~~~Ll~~~~~~~~~~~~~~~~g  116 (241)
T 1k1a_A           47 QTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC--EHRS--------PTCLRALLDSAAPGTLDLEARNYDG  116 (241)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--HTTC--------HHHHHHHHHHSCTTSCCTTCCCTTS
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH--HcCC--------HHHHHHHHHcCCCccccccccCcCC
Confidence            48999999999999999999954444457999999999999  9999        9999999999872   267889999


Q ss_pred             ChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCC-CCCCChhhHHHhcCCHHHHHHHhcCCCCCCCC
Q 047844           79 DAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKN-DEEDTALHEAVQSGSLDVVKILLGADPAFPYS  157 (264)
Q Consensus        79 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~  157 (264)
                      .||||+|+..|+.+++++|++.|++++.                 .+ ..|.||||+|+..|+.+++++|++.|+++ +.
T Consensus       117 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-----------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~  178 (241)
T 1k1a_A          117 LTALHVAVNTECQETVQLLLERGADIDA-----------------VDIKSGRSPLIHAVENNSLSMVQLLLQHGANV-NA  178 (241)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTC-----------------CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TC
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCccc-----------------ccccCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CC
Confidence            9999999999999999999999988554                 56 78999999999999999999999999996 78


Q ss_pred             CCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhh
Q 047844          158 ANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHR  218 (264)
Q Consensus       158 ~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~  218 (264)
                      .|..|+||||+|+..++.+++++|+++|++++.+|..|.||+++|+..++.++++.|...+
T Consensus       179 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~  239 (241)
T 1k1a_A          179 QMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRP  239 (241)
T ss_dssp             BCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC-----
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCC
Confidence            8999999999999999999999999999999999999999999999999999999987654

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=4.3e-36  Score=238.95  Aligned_cols=204  Identities=16%  Similarity=0.089  Sum_probs=167.8

Q ss_pred             CcHHHHHHHcCCchHHhhhhh----hcccccc----cCCCCCchhHHHHHHhh---hcCcCCCcccHHHHHHHHHhCCcc
Q 047844            2 NSDLYEAAAKGEIEPFNQLAI----DRQLGSL----VTHKKNTVLHVNIIASY---TQNKEGESVSTKFVERIIEMCPSL   70 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~----~~~~~~~----~~~~g~t~L~~A~~~~~---g~~~~~~~~~~~~~~~ll~~~~~~   70 (264)
                      .||||+||..|+.+.++.|++    .+...+.    .|..|.||||+|+  ..   |+        .+++++|++.+.+.
T Consensus         3 ~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~--~~~~~g~--------~~~v~~Ll~~g~~~   72 (256)
T 2etb_A            3 RDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAV--LNLQDGV--------NACIMPLLQIDKDS   72 (256)
T ss_dssp             HHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHH--HTCBTTB--------CTTHHHHHHHHHHT
T ss_pred             ccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHH--Hccccch--------HHHHHHHHhcCCcc
Confidence            489999999999986655554    3333343    6889999999999  99   99        99999999988763


Q ss_pred             ce----------ecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCC
Q 047844           71 LL----------QVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGS  140 (264)
Q Consensus        71 ~~----------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~  140 (264)
                      ..          ..|..|.||||+|+..|+.+++++|++.|++++..+.....    ....+..+..|.||||+|+..|+
T Consensus        73 ~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~----~~~~~~~~~~g~tpL~~A~~~~~  148 (256)
T 2etb_A           73 GNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFF----QKHQGTCFYFGELPLSLAACTKQ  148 (256)
T ss_dssp             TCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGG----SCCSSSCCCSCSSHHHHHHHTTC
T ss_pred             cchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccc----cccccccccCCCCHHHHHHHcCC
Confidence            21          23467999999999999999999999999886652211000    00001112239999999999999


Q ss_pred             HHHHHHHhc---CCCCCCCCCCCCCCCHHHHHHH--hChHH-------HHHHHHhhCCCC-------CcCCCCCccHHhH
Q 047844          141 LDVVKILLG---ADPAFPYSANGSGETPLYLAAA--RAHKE-------ISAEILQKCPSP-------AHEGPNGKTALHA  201 (264)
Q Consensus       141 ~~~~~~Ll~---~g~~~~~~~~~~g~t~Lh~A~~--~~~~~-------~~~~Ll~~ga~~-------~~~~~~g~tpl~~  201 (264)
                      .+++++|++   .|+++ +.+|..|+||||+|+.  .++.+       ++++|+++|+++       +.+|..|.||||+
T Consensus       149 ~~~v~~Ll~~~~~ga~~-n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~  227 (256)
T 2etb_A          149 WDVVTYLLENPHQPASL-EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKL  227 (256)
T ss_dssp             HHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHH
T ss_pred             HHHHHHHHhccccCCCc-CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHH
Confidence            999999999   89996 7899999999999999  78888       999999999999       8999999999999


Q ss_pred             HHhcCChHHHHHHHhhhCC
Q 047844          202 AVCSRSCAASRCHKLHRSS  220 (264)
Q Consensus       202 A~~~~~~~~~~~l~~~~~~  220 (264)
                      |+..|+.+++++|+.++..
T Consensus       228 A~~~g~~~~v~~Ll~~g~~  246 (256)
T 2etb_A          228 AAKEGKIEIFRHILQREFS  246 (256)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHhCCCC
Confidence            9999999999999998753

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.1e-35  Score=221.63  Aligned_cols=155  Identities=26%  Similarity=0.342  Sum_probs=96.4

Q ss_pred             hhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhH
Q 047844           37 VLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVEST  116 (264)
Q Consensus        37 ~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~  116 (264)
                      +|+.||  +.|+        .+++++|++.|.+ ++.+|..|+||||+|+..++.+++++|++.|++++.          
T Consensus         7 ~L~~Aa--~~G~--------~~~v~~Ll~~Gad-vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~----------   65 (169)
T 4gpm_A            7 RLIEAA--ENGN--------KDRVKDLIENGAD-VNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNA----------   65 (169)
T ss_dssp             HHHHHH--HTTC--------HHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC----------
T ss_pred             HHHHHH--HcCC--------HHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhh----------
Confidence            466666  6666        6666666666666 556666666666666666666666666666655333          


Q ss_pred             HHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCc
Q 047844          117 ARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGK  196 (264)
Q Consensus       117 ~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~  196 (264)
                             ++..|.||||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+
T Consensus        66 -------~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~  137 (169)
T 4gpm_A           66 -------KDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGR  137 (169)
T ss_dssp             -------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             -------hccCCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCC
Confidence                   5666666666666666666666666666664 55566666666666666666666666666666666666666


Q ss_pred             cHHhHHHhcCChHHHHHHHhhhCC
Q 047844          197 TALHAAVCSRSCAASRCHKLHRSS  220 (264)
Q Consensus       197 tpl~~A~~~~~~~~~~~l~~~~~~  220 (264)
                      |||++|+.+++.+++++|+.+|+.
T Consensus       138 TpL~~A~~~g~~~iv~~Ll~~GA~  161 (169)
T 4gpm_A          138 TPLDLAREHGNEEVVKLLEKQGGW  161 (169)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTC---
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCC
Confidence            666666666666666666666553

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.7e-35  Score=247.11  Aligned_cols=205  Identities=15%  Similarity=0.161  Sum_probs=172.5

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChH
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAP   81 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~   81 (264)
                      .||||+||..|+.+++++|++.+...+..|..|.||||+|+  ..|+        .+++++|++.+.+.   .+.+|.||
T Consensus        21 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~--~~g~--------~~~v~~Ll~~g~~~---~~~~g~t~   87 (364)
T 3ljn_A           21 MEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLAC--KFGC--------VDTAKYLASVGEVH---SLWHGQKP   87 (364)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH--HHCC--------HHHHHHHHHHCCCC---CCBTTBCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHH--HcCC--------HHHHHHHHHCCCCc---cccCCCCH
Confidence            37999999999999999999944344458899999999999  9999        99999999999852   34578899


Q ss_pred             HHHHHHhCCHHHHHHHHHH----hhhcch-----------------h----------hhhhc--hhhHHHHH------hc
Q 047844           82 LHVAARYGHAAVVEALIEI----AKQESD-----------------Q----------EIESG--VESTARHM------LG  122 (264)
Q Consensus        82 L~~A~~~g~~~~v~~Ll~~----~~~~~~-----------------~----------~~~~~--~~~~~~~~------l~  122 (264)
                      ||+|+..|+.+++++|++.    +..++.                 .          ....+  ....+..+      ++
T Consensus        88 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~  167 (364)
T 3ljn_A           88 IHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPT  167 (364)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTT
T ss_pred             HHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCc
Confidence            9999999999999999988    333322                 1          11222  33334433      35


Q ss_pred             CCCCCCCChhhHHHhcCCHHHHHHHhcCCCC-----CCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCcc
Q 047844          123 MKNDEEDTALHEAVQSGSLDVVKILLGADPA-----FPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKT  197 (264)
Q Consensus       123 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-----~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~t  197 (264)
                      .++..|.||||+|+..|+.+++++|++.|++     + +..|..|+||||+|+..|+.+++++|+++|++++.+|..|.|
T Consensus       168 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t  246 (364)
T 3ljn_A          168 AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRL-DYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTV  246 (364)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCT-TCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccc-cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence            6888999999999999999999999999888     5 678899999999999999999999999999999999999999


Q ss_pred             HHhHHHhcCChHHHHHHHhhhCC
Q 047844          198 ALHAAVCSRSCAASRCHKLHRSS  220 (264)
Q Consensus       198 pl~~A~~~~~~~~~~~l~~~~~~  220 (264)
                      |||+|+..++.+++++|+.+++.
T Consensus       247 pL~~A~~~g~~~~v~~Ll~~~~~  269 (364)
T 3ljn_A          247 PLYLSVRAAMVLLTKELLQKTDV  269 (364)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHSCH
T ss_pred             HHHHHHHhChHHHHHHHHHcCCc
Confidence            99999999999999999998653

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=6.8e-36  Score=241.55  Aligned_cols=193  Identities=15%  Similarity=0.074  Sum_probs=173.5

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChH
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAP   81 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~   81 (264)
                      .||||+|+..|+.+++++|++.+...  ...+|.||||+|+  ..|+        .+++++|++.+.+ ++..|..|+||
T Consensus        32 ~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~g~t~L~~A~--~~g~--------~~~v~~Ll~~ga~-~~~~d~~g~t~   98 (285)
T 3kea_A           32 HSASYYAIADNNVRLVCTLLNAGALK--NLLENEFPLHQAA--TLED--------TKIVKILLFSGLD-DSQFDDKGNTA   98 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTGGG--SCCTTCCHHHHHT--TSSS--------CHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCC--CCCCCCCHHHHHH--HcCC--------HHHHHHHHHCCCC-CCCcCCCCCcH
Confidence            58999999999999999999943222  2235999999999  9999        9999999999999 78899999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCC-CChhhHHHhcCCHHHHHHHhcCCCCCCCCCCC
Q 047844           82 LHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEE-DTALHEAVQSGSLDVVKILLGADPAFPYSANG  160 (264)
Q Consensus        82 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  160 (264)
                      ||+|+..|+.+++++|++.|++++.                 ++..| .||||+|+..|+.+++++|++.|++...  ..
T Consensus        99 L~~A~~~g~~~~v~~Ll~~ga~~~~-----------------~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~  159 (285)
T 3kea_A           99 LYYAVDSGNMQTVKLFVKKNWRLMF-----------------YGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--LA  159 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHHCGGGGG-----------------CSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC--CS
T ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCc-----------------cCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc--cc
Confidence            9999999999999999999998655                 88888 7999999999999999999999987521  22


Q ss_pred             CCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccH-HhHHHhcCChHHHHHHHhhhCCCCCCCC
Q 047844          161 SGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTA-LHAAVCSRSCAASRCHKLHRSSRFLPSP  226 (264)
Q Consensus       161 ~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tp-l~~A~~~~~~~~~~~l~~~~~~~~~~~~  226 (264)
                      .|+||||+|+..|+.+++++|+++|++++.++..|+|| ||+|+..++.+++++|+.+++.......
T Consensus       160 ~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~  226 (285)
T 3kea_A          160 ILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL  226 (285)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG
T ss_pred             CCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh
Confidence            89999999999999999999999999999999999998 9999999999999999999886555443

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=4e-35  Score=218.58  Aligned_cols=125  Identities=27%  Similarity=0.403  Sum_probs=84.1

Q ss_pred             hhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhH
Q 047844           37 VLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVEST  116 (264)
Q Consensus        37 ~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~  116 (264)
                      |||+|+  ..++        .+++++|++.+.+ ++.+|..|+||||+|+..|+.+++++|++.|++++.          
T Consensus        40 ~l~~a~--~~~~--------~~~~~~ll~~gad-~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~----------   98 (169)
T 4gpm_A           40 PLHHAA--ENGH--------KEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNA----------   98 (169)
T ss_dssp             HHHHHH--HTTC--------HHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC----------
T ss_pred             HHHHHH--HcCC--------HHHHHHHHhcccc-hhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCC----------
Confidence            577777  7777        7777777777766 566677777777777777777777777777666433          


Q ss_pred             HHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCc
Q 047844          117 ARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAH  190 (264)
Q Consensus       117 ~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~  190 (264)
                             +|..|.||||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus        99 -------~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A           99 -------KDSDGRTPLHHAAENGHKEVVKLLISKGADV-NTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             -------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred             -------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence                   6667777777777777777777777777764 56667777777777777777777777777776654

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=1.3e-35  Score=238.41  Aligned_cols=205  Identities=16%  Similarity=0.105  Sum_probs=169.3

Q ss_pred             CcHHHHHHHcCCchHHhhhhhh---cc-ccc----ccCCCCCchhHHHHHHhh---hcCcCCCcccHHHHHHHHHhCCcc
Q 047844            2 NSDLYEAAAKGEIEPFNQLAID---RQ-LGS----LVTHKKNTVLHVNIIASY---TQNKEGESVSTKFVERIIEMCPSL   70 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~---~~-~~~----~~~~~g~t~L~~A~~~~~---g~~~~~~~~~~~~~~~ll~~~~~~   70 (264)
                      .||||+||..|+.++|+.|++.   .. ...    ..+..|.||||+|+  ..   |+        .+++++|++.+.+.
T Consensus        14 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~--~~~~~g~--------~~~v~~Ll~~ga~~   83 (273)
T 2pnn_A           14 RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM--LNLHNGQ--------NDTIALLLDVARKT   83 (273)
T ss_dssp             HHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHH--HSCBTTB--------CHHHHHHHHHHHHT
T ss_pred             chHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHH--HHHhcCC--------hHHHHHHHHhhccc
Confidence            4899999999999999999971   11 111    24789999999999  87   99        99999999987542


Q ss_pred             ------ce----ecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCC
Q 047844           71 ------LL----QVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGS  140 (264)
Q Consensus        71 ------~~----~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~  140 (264)
                            ++    ..|..|+||||+|+..|+.+++++|+++|++++..+.....   .....+..+..|.||||+|+..|+
T Consensus        84 ~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~---~~~~~~~~~~~g~tpL~~A~~~g~  160 (273)
T 2pnn_A           84 DSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFF---KKTKGRPGFYFGELPLSLAACTNQ  160 (273)
T ss_dssp             TCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGG---SSCSSSCCCCSCBSHHHHHHHTTC
T ss_pred             cchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcccccccc---ccccccccccCCCCHHHHHHHcCC
Confidence                  12    25678999999999999999999999999887652210000   000011222379999999999999


Q ss_pred             HHHHHHHhc---CCCCCCCCCCCCCCCHHHHHHHhCh---------HHHHHHHHhhCCCCC-------cCCCCCccHHhH
Q 047844          141 LDVVKILLG---ADPAFPYSANGSGETPLYLAAARAH---------KEISAEILQKCPSPA-------HEGPNGKTALHA  201 (264)
Q Consensus       141 ~~~~~~Ll~---~g~~~~~~~~~~g~t~Lh~A~~~~~---------~~~~~~Ll~~ga~~~-------~~~~~g~tpl~~  201 (264)
                      .+++++|++   .|+++ +.+|..|+||||+|+..++         .+++++|+++|++++       .+|..|.||||+
T Consensus       161 ~~~v~~Ll~~~~~gad~-~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~  239 (273)
T 2pnn_A          161 LAIVKFLLQNSWQPADI-SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLAL  239 (273)
T ss_dssp             HHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHH
T ss_pred             HHHHHHHHhcccCCCCc-eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHH
Confidence            999999999   89996 7899999999999999887         899999999999986       489999999999


Q ss_pred             HHhcCChHHHHHHHhhhCC
Q 047844          202 AVCSRSCAASRCHKLHRSS  220 (264)
Q Consensus       202 A~~~~~~~~~~~l~~~~~~  220 (264)
                      |+..|+.+++++|+.+++.
T Consensus       240 A~~~g~~~iv~~Ll~~ga~  258 (273)
T 2pnn_A          240 AASSGKIGVLAYILQREIH  258 (273)
T ss_dssp             HHHTTCHHHHHHHHHHHTC
T ss_pred             HHHhChHHHHHHHHHCCCC
Confidence            9999999999999999974

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=7.4e-35  Score=229.02  Aligned_cols=187  Identities=22%  Similarity=0.256  Sum_probs=172.1

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChH
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAP   81 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~   81 (264)
                      .||||+|+..|+.+++++|++.+...+..+..|.||||.|+  ..|+        .+++++|++.++..++..+..|.||
T Consensus        45 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~--------~~~~~~Ll~~~~~~~~~~~~~g~t~  114 (237)
T 3b7b_A           45 RTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAA--KKGH--------YEVVQYLLSNGQMDVNCQDDGGWTP  114 (237)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHH--HTTC--------HHHHHHHHTTTCCCTTCCCTTSCCH
T ss_pred             CCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHH--HcCC--------HHHHHHHHhCCCCCcccCCCCCCCH
Confidence            47999999999999999999955444558899999999999  9999        9999999999965588899999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCC
Q 047844           82 LHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGS  161 (264)
Q Consensus        82 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~  161 (264)
                      ||+|+..|+.+++++|++.|++++.                 ++..|.||||+|+..|+.+++++|++.|+++ +..|..
T Consensus       115 L~~A~~~~~~~~~~~Ll~~g~~~~~-----------------~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~  176 (237)
T 3b7b_A          115 MIWATEYKHVDLVKLLLSKGSDINI-----------------RDNEENICLHWAAFSGCVDIAEILLAAKCDL-HAVNIH  176 (237)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTC-----------------CCTTSCCHHHHHHHHCCHHHHHHHHTTTCCT-TCCCTT
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCc-----------------cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCC
Confidence            9999999999999999999988544                 8899999999999999999999999999996 788999


Q ss_pred             CCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHh
Q 047844          162 GETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKL  216 (264)
Q Consensus       162 g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~  216 (264)
                      |.||||+|+..++.+++++|+++|++++.+|..|.||+|+|+.+++.+.+..+..
T Consensus       177 g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~  231 (237)
T 3b7b_A          177 GDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSK  231 (237)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999877665543

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=2.1e-34  Score=238.66  Aligned_cols=209  Identities=21%  Similarity=0.159  Sum_probs=173.1

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChH
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAP   81 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~   81 (264)
                      .||||+|+..|+.+++++|++.+...+..+..|.||||+|+  ..|+        .+++++|++.+.+ ++..+..|.||
T Consensus        59 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~g~--------~~iv~~Ll~~g~~-~~~~~~~g~t~  127 (351)
T 3utm_A           59 STPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNAC--SYGH--------YEVTELLLKHGAC-VNAMDLWQFTP  127 (351)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH--HTTC--------HHHHHHHHHTTCC-TTCCCTTCCCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHH--HCCC--------HHHHHHHHHCCCC-CCCCCCCCCCH
Confidence            47899999999999999999844444447888999999999  9999        9999999998888 77888889999


Q ss_pred             HHHHHHhCCHHHHHHHHHHhhhcchhhhhhchh-------------------------------hHHHHHh------cCC
Q 047844           82 LHVAARYGHAAVVEALIEIAKQESDQEIESGVE-------------------------------STARHML------GMK  124 (264)
Q Consensus        82 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~-------------------------------~~~~~~l------~~~  124 (264)
                      ||+|+..|+.+++++|+++|+++...+......                               .....++      ...
T Consensus       128 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  207 (351)
T 3utm_A          128 LHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQ  207 (351)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccC
Confidence            999999999999999999887765432111000                               0011111      135


Q ss_pred             CCCCCChhhHHHhc---CCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhH
Q 047844          125 NDEEDTALHEAVQS---GSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHA  201 (264)
Q Consensus       125 ~~~g~t~L~~A~~~---~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~  201 (264)
                      +..|.||||+|+..   +..+++++|++.|+++ +.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus       208 ~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~  286 (351)
T 3utm_A          208 PQSHETALHCAVASLHPKRKQVAELLLRKGANV-NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHR  286 (351)
T ss_dssp             TTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence            57789999999999   5689999999999996 7889999999999999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHhhhCCCC
Q 047844          202 AVCSRSCAASRCHKLHRSSRF  222 (264)
Q Consensus       202 A~~~~~~~~~~~l~~~~~~~~  222 (264)
                      |+..++.+++++|+.+++...
T Consensus       287 A~~~~~~~~v~~Ll~~gad~~  307 (351)
T 3utm_A          287 AALAGHLQTCRLLLSYGSDPS  307 (351)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTT
T ss_pred             HHHcCcHHHHHHHHHcCCCCC
Confidence            999999999999999987543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1e-35  Score=238.41  Aligned_cols=182  Identities=19%  Similarity=0.211  Sum_probs=147.6

Q ss_pred             CcHHHHHHHcCCch-HHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCCh
Q 047844            2 NSDLYEAAAKGEIE-PFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDA   80 (264)
Q Consensus         2 ~~~l~~A~~~g~~~-~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t   80 (264)
                      .+||++|+..++.+ +++.|++.+-..+..|.+|.||||+|+  ..|+        .+++++|++.+++ ++..+..|.|
T Consensus        53 ~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~--~~g~--------~~~v~~Ll~~~a~-~~~~~~~g~t  121 (269)
T 4b93_B           53 CHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAA--LHGR--------ADLIPLLLKHGAN-AGARNADQAV  121 (269)
T ss_dssp             ----------------------CCCCTTCCCTTSCCHHHHHH--HTTC--------TTHHHHHHHTTCC-TTCCCTTCCC
T ss_pred             CCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHH--HcCc--------HHHHHHHHhcCCC-cCccCCCCCC
Confidence            47899999988764 788888843334448999999999999  9999        9999999999998 7889999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCC
Q 047844           81 PLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANG  160 (264)
Q Consensus        81 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  160 (264)
                      |+++|+..++.+++++|++.|++++.                 +|..|.||||+|+..|+.+++++|++.|+++ +..+.
T Consensus       122 ~l~~a~~~~~~~~~~~Ll~~g~~~n~-----------------~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadv-n~~~~  183 (269)
T 4b93_B          122 PLHLACQQGHFQVVKCLLDSNAKPNK-----------------KDLSGNTPLIYACSGGHHELVALLLQHGASI-NASNN  183 (269)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCSCC-----------------CCTTCCCHHHHHHHTTCGGGHHHHHHTTCCT-TCBCT
T ss_pred             ccccccccChHHHHHHHHHCCCCCCC-----------------CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC-Ccccc
Confidence            99999999999999999999988654                 8999999999999999999999999999996 78899


Q ss_pred             CCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHH
Q 047844          161 SGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCH  214 (264)
Q Consensus       161 ~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l  214 (264)
                      .|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+++  ++++|
T Consensus       184 ~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~--i~~lL  235 (269)
T 4b93_B          184 KGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSK--IMELL  235 (269)
T ss_dssp             TSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCH--HHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCc--HHHHH
Confidence            99999999999999999999999999999999999999999988764  44444

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=2.4e-34  Score=233.76  Aligned_cols=190  Identities=23%  Similarity=0.174  Sum_probs=140.7

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChH
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAP   81 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~   81 (264)
                      .||||.||..|+++++++|++.+...+..+..|.||||+|+  ..|+        .+++++|++.+.+ ++..|..|+||
T Consensus        41 ~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~g~--------~~~v~~Ll~~ga~-~~~~~~~g~tp  109 (299)
T 1s70_B           41 GAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQAC--IDDN--------VDMVKFLVENGAN-INQPDNEGWIP  109 (299)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHH--HTTC--------HHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred             ccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH--HcCC--------HHHHHHHHHCCCC-CCCCCCCCCcH
Confidence            37899999999999999999944444558999999999999  9999        9999999999998 78899999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcC-CC--------
Q 047844           82 LHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGA-DP--------  152 (264)
Q Consensus        82 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~--------  152 (264)
                      ||+|+..|+.+++++|+++|++++.                 .+..|.||||+|+..++.+++++++.. |.        
T Consensus       110 L~~A~~~g~~~~v~~Ll~~g~~~~~-----------------~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~  172 (299)
T 1s70_B          110 LHAAASCGYLDIAEYLISQGAHVGA-----------------VNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKE  172 (299)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTC-----------------CCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCC-----------------cCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhh
Confidence            9999999999999999999988654                 555666666666666666655554431 11        


Q ss_pred             -----------------CCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHH
Q 047844          153 -----------------AFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHK  215 (264)
Q Consensus       153 -----------------~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~  215 (264)
                                       ......+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+
T Consensus       173 ~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll  252 (299)
T 1s70_B          173 EERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILV  252 (299)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHH
Confidence                             111223445666666666666666666666666666666666666666666666666666666


Q ss_pred             hhhC
Q 047844          216 LHRS  219 (264)
Q Consensus       216 ~~~~  219 (264)
                      .+++
T Consensus       253 ~~ga  256 (299)
T 1s70_B          253 ENLC  256 (299)
T ss_dssp             HTTC
T ss_pred             HcCC
Confidence            6554

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=9e-34  Score=228.24  Aligned_cols=192  Identities=19%  Similarity=0.168  Sum_probs=171.4

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceec-------
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQV-------   74 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~-------   74 (264)
                      .||||+|+..|+.+++++|++.+...+..+..|.||||.|+  ..|+        .+++++|++.+.+ ++..       
T Consensus        73 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~--------~~~~~~Ll~~g~~-~~~~~~~~~~~  141 (285)
T 1wdy_A           73 ATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAA--VYGK--------VKALKFLYKRGAN-VNLRRKTKEDQ  141 (285)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHH--HTTC--------HHHHHHHHHTTCC-TTCCCCCCHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHH--HhCC--------HHHHHHHHHhCCC-cccccccHHHH
Confidence            47888888888888888888844344447888999999999  9999        9999999999887 4444       


Q ss_pred             ---CCCCChHHHHHHHhCCHHHHHHHHHH-hhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCC----HHHHHH
Q 047844           75 ---NAKGDAPLHVAARYGHAAVVEALIEI-AKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGS----LDVVKI  146 (264)
Q Consensus        75 ---~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~----~~~~~~  146 (264)
                         +..|.||||+|+..|+.+++++|++. |.+++                 ..+..|.||||+|+..++    .+++++
T Consensus       142 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~-----------------~~~~~g~t~l~~a~~~~~~~~~~~i~~~  204 (285)
T 1wdy_A          142 ERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN-----------------ACDNMGRNALIHALLSSDDSDVEAITHL  204 (285)
T ss_dssp             HHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTT-----------------CCCTTSCCHHHHHHHCSCTTTHHHHHHH
T ss_pred             HhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCC-----------------ccCCCCCCHHHHHHHccccchHHHHHHH
Confidence               77899999999999999999999987 77644                 488999999999999999    999999


Q ss_pred             HhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHh-hCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhCCCC
Q 047844          147 LLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQ-KCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSSRF  222 (264)
Q Consensus       147 Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~~  222 (264)
                      |++.|+++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|+.+++...
T Consensus       205 Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~  280 (285)
T 1wdy_A          205 LLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD  280 (285)
T ss_dssp             HHHTTCCS-SCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSC
T ss_pred             HHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCC
Confidence            99999995 7889999999999999999999999999 899999999999999999999999999999999987643

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.1e-34  Score=231.85  Aligned_cols=183  Identities=20%  Similarity=0.174  Sum_probs=167.0

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChH
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAP   81 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~   81 (264)
                      .||||+|+..|+.+++++|++.+...+..|..|.||||+|+  ..|+        .+++++|++.+.+ ++. +..|.||
T Consensus        93 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~--~~~~--------~~~v~~Ll~~g~~-~~~-~~~g~t~  160 (285)
T 3d9h_A           93 VSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNAC--VSGS--------WDCVNLLLQHGAS-VQP-ESDLASP  160 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHH--HHTC--------HHHHHHHHHTTCC-SSC-SCTTSCH
T ss_pred             CCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH--HcCH--------HHHHHHHHHCCCC-CCC-CCCCCCH
Confidence            58999999999999999999954444558999999999999  9999        9999999999988 443 4569999


Q ss_pred             HHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCC
Q 047844           82 LHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGS  161 (264)
Q Consensus        82 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~  161 (264)
                      ||+|+..|+.+++++|++.|++++.                 ++..|.||||+|+..|+.+++++|++.|+++.  .+..
T Consensus       161 L~~A~~~g~~~~v~~Ll~~g~~~~~-----------------~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~  221 (285)
T 3d9h_A          161 IHEAARRGHVECVNSLIAYGGNIDH-----------------KISHLGTPLYLACENQQRACVKKLLESGADVN--QGKG  221 (285)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTC-----------------CBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTT--CCBT
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCC-----------------cCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCC--CCCC
Confidence            9999999999999999999987544                 88999999999999999999999999999963  4889


Q ss_pred             CCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhh
Q 047844          162 GETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLH  217 (264)
Q Consensus       162 g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~  217 (264)
                      |+||||+|+..++.+++++|+++|++++.+|..|+||+++|+  ++.+++++|+.+
T Consensus       222 g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~  275 (285)
T 3d9h_A          222 QDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP--PESPLAQLFLER  275 (285)
T ss_dssp             TBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHh
Confidence            999999999999999999999999999999999999999999  457899999887

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=2.9e-34  Score=224.30  Aligned_cols=183  Identities=21%  Similarity=0.192  Sum_probs=165.1

Q ss_pred             CcHHHHHHHcCCchHHhhhhhh---cccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhC--CccceecCC
Q 047844            2 NSDLYEAAAKGEIEPFNQLAID---RQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMC--PSLLLQVNA   76 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~---~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~--~~~~~~~~~   76 (264)
                      .||||+|+..|+.+++++|++.   .+.....+..|.||||+|+  ..|+        .+++++|++.+  .+ ++..+.
T Consensus        37 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~--~~~~--------~~~~~~Ll~~g~~~~-~~~~~~  105 (228)
T 2dzn_A           37 RIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC--SVGN--------LEVVKSLYDRPLKPD-LNKITN  105 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH--HHCC--------HHHHHHHHSSSSCCC-TTCCCT
T ss_pred             CCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH--HcCC--------HHHHHHHHhCCCCcc-cccCCc
Confidence            5899999999999999999993   3433236789999999999  9999        99999999998  55 788899


Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCC-CCCC
Q 047844           77 KGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGAD-PAFP  155 (264)
Q Consensus        77 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~  155 (264)
                      .|.||||+|+..|+.+++++|++.|++++.                 ++..|.||||+|+..|+.+++++|++.| ++ .
T Consensus       106 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-----------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~  167 (228)
T 2dzn_A          106 QGVTCLHLAVGKKWFEVSQFLIENGASVRI-----------------KDKFNQIPLHRAASVGSLKLIELLCGLGKSA-V  167 (228)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCSCC-----------------CCTTSCCHHHHHHHTTCHHHHHHHHTTTCCC-S
T ss_pred             CCCCHHHHHHHcCCHhHHHHHHHcCCCccc-----------------cCCCCCCHHHHHHHcCCHHHHHHHHhcCccc-c
Confidence            999999999999999999999999988554                 8899999999999999999999999999 66 4


Q ss_pred             CCCCCCCCCHHHHHHHhChHHHHHHHH-hhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHh
Q 047844          156 YSANGSGETPLYLAAARAHKEISAEIL-QKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKL  216 (264)
Q Consensus       156 ~~~~~~g~t~Lh~A~~~~~~~~~~~Ll-~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~  216 (264)
                      +..|..|+||||+|+..++.+++++|+ ++|++++.+|..|.||+++|+..   +++++++.
T Consensus       168 ~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~  226 (228)
T 2dzn_A          168 NWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLN  226 (228)
T ss_dssp             CCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHT
T ss_pred             cCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHh
Confidence            788999999999999999999999999 89999999999999999999765   45565544

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=2.5e-34  Score=240.92  Aligned_cols=198  Identities=18%  Similarity=0.179  Sum_probs=175.4

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhC---CccceecCCCC
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMC---PSLLLQVNAKG   78 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~---~~~~~~~~~~g   78 (264)
                      .||||+|+..|+.+++++|++.+...+..+..|.||||+|+  ..|+        .+++++|++.+   .+ ++..|..|
T Consensus       167 ~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~--~~g~--------~~~v~~Ll~~~~~~~~-~~~~d~~g  235 (373)
T 2fo1_E          167 NTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAA--ANRD--------FGMMVYMLNSTKLKGD-IEELDRNG  235 (373)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHH--HTTC--------HHHHHHHTTSHHHHHT-TSCCCTTS
T ss_pred             CCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHH--HCCC--------HHHHHHHHhcCccccC-hhhcCCCC
Confidence            58999999999999999999944444458999999999999  9999        99999999987   45 77889999


Q ss_pred             ChHHHHHHHhC---CHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCC-CCC
Q 047844           79 DAPLHVAARYG---HAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGAD-PAF  154 (264)
Q Consensus        79 ~t~L~~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~  154 (264)
                      .||||+|+..+   +.+++++|++.|++++....         ...+..+..|.||||+|+..|+.+++++|++.+ +++
T Consensus       236 ~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~---------~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~  306 (373)
T 2fo1_E          236 MTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA---------ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK  306 (373)
T ss_dssp             CCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSG---------GGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCT
T ss_pred             CCHHHHHHHhCCcchHHHHHHHHHCCCCcccccc---------cccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCc
Confidence            99999999998   89999999999988754211         112346779999999999999999999999876 674


Q ss_pred             CCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhCC
Q 047844          155 PYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSS  220 (264)
Q Consensus       155 ~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~  220 (264)
                       +..|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|+.+++.+++++|+.+++.
T Consensus       307 -n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          307 -DKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE  371 (373)
T ss_dssp             -TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred             -cCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence             78999999999999999999999999999999999999999999999999999999999988654

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.5e-33  Score=240.89  Aligned_cols=207  Identities=24%  Similarity=0.257  Sum_probs=158.7

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChH
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAP   81 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~   81 (264)
                      .||||+||..|+++++++|++.+...+..+..|.||||.|+  ..|+        .+++++|++.+.+ ++..+..|+||
T Consensus        15 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~--~~g~--------~~~v~~Ll~~g~~-~~~~~~~g~t~   83 (437)
T 1n11_A           15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAA--RAGH--------TEVAKYLLQNKAK-VNAKAKDDQTP   83 (437)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHH--HHTC--------HHHHHHHHHHTCC-SSCCCTTSCCH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH--HcCC--------HHHHHHHHhCCCC-CCCCCCCCCCH
Confidence            48999999999999999999944444447889999999999  9999        9999999999998 78899999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHhhhcchhhhh----------hchhhHHHHHh------cCCCCCCCChhhHHHhcCCHHHHH
Q 047844           82 LHVAARYGHAAVVEALIEIAKQESDQEIE----------SGVESTARHML------GMKNDEEDTALHEAVQSGSLDVVK  145 (264)
Q Consensus        82 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~----------~~~~~~~~~~l------~~~~~~g~t~L~~A~~~~~~~~~~  145 (264)
                      ||+|+..|+.+++++|+++|++++..+..          .+....+..++      +..+..|.||||+|+..|+.++++
T Consensus        84 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~  163 (437)
T 1n11_A           84 LHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAE  163 (437)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHH
Confidence            99999999999999999999886653221          11122222222      234556777777777777777777


Q ss_pred             HHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhCC
Q 047844          146 ILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSS  220 (264)
Q Consensus       146 ~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~  220 (264)
                      +|+++|+++ +..+..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..++.+++++|+.++..
T Consensus       164 ~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~  237 (437)
T 1n11_A          164 LLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS  237 (437)
T ss_dssp             HHHHTTCCT-TCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHhCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            777777764 56666777777777777777777777777777777777777777777777777777777766543

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.1e-33  Score=241.74  Aligned_cols=207  Identities=20%  Similarity=0.210  Sum_probs=139.1

Q ss_pred             cHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHH
Q 047844            3 SDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPL   82 (264)
Q Consensus         3 ~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L   82 (264)
                      ||||+|+..|+.+++++|++.....+..+..|.||||.|+  ..|+        .+++++|++.+.+ ++..+..|.|||
T Consensus       148 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~--------~~~v~~Ll~~g~~-~~~~~~~g~t~L  216 (437)
T 1n11_A          148 TPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAV--HHNN--------LDIVKLLLPRGGS-PHSPAWNGYTPL  216 (437)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHH--HTTC--------HHHHHHHGGGTCC-SCCCCTTCCCHH
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHH--HcCC--------HHHHHHHHhCCCC-CCCcCCCCCCHH
Confidence            6777777777777777777633333335666777777777  7777        7777777776666 555666667777


Q ss_pred             HHHHHhCCHHHHHHHHHHhhhcchhhh----------hhchhhHHHHHh------cCCCCCCCChhhHHHhcCCHHHHHH
Q 047844           83 HVAARYGHAAVVEALIEIAKQESDQEI----------ESGVESTARHML------GMKNDEEDTALHEAVQSGSLDVVKI  146 (264)
Q Consensus        83 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~----------~~~~~~~~~~~l------~~~~~~g~t~L~~A~~~~~~~~~~~  146 (264)
                      |+|+..|+.+++++|++.|++++..+.          ..+.......++      +..+..|.||||+|+..|+.+++++
T Consensus       217 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~  296 (437)
T 1n11_A          217 HIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADV  296 (437)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            777777777777777766655443321          111222222222      3456677777777777777777777


Q ss_pred             HhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhCCC
Q 047844          147 LLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSSR  221 (264)
Q Consensus       147 Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~  221 (264)
                      |++.|+++ +..+..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+.+++..
T Consensus       297 Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~  370 (437)
T 1n11_A          297 LIKHGVMV-DATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP  370 (437)
T ss_dssp             HHHHTCCT-TCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred             HHhCCccC-CCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCC
Confidence            77777774 566777777777777777777777777777777777777777777777777777777777776543

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.1e-33  Score=225.09  Aligned_cols=206  Identities=18%  Similarity=0.236  Sum_probs=161.4

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhccccccc-CCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCCh
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLV-THKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDA   80 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~-~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t   80 (264)
                      +|+||.|+..|+++++++|++.+...+.. +..|.||||+|+  ..|+        .+++++|++.+.+ ++..+..|.|
T Consensus         6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~--~~g~--------~~~v~~Ll~~g~~-~~~~~~~g~t   74 (285)
T 1wdy_A            6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAV--QMSR--------EDIVELLLRHGAD-PVLRKKNGAT   74 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHH--HTTC--------HHHHHHHHHTTCC-TTCCCTTCCC
T ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHH--HcCC--------HHHHHHHHHcCCC-CcccCCCCCC
Confidence            36788888888888888888732222223 666778888888  7888        8888888887777 6667777888


Q ss_pred             HHHHHHHhCCHHHHHHHHHHhhhcchhhh----------hhchhhHHHHHhc------CC----------CCCCCChhhH
Q 047844           81 PLHVAARYGHAAVVEALIEIAKQESDQEI----------ESGVESTARHMLG------MK----------NDEEDTALHE  134 (264)
Q Consensus        81 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~----------~~~~~~~~~~~l~------~~----------~~~g~t~L~~  134 (264)
                      |||+|+..|+.+++++|+++|++++..+.          ..+.......++.      ..          +..|.||||+
T Consensus        75 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~  154 (285)
T 1wdy_A           75 PFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMD  154 (285)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHH
Confidence            88888888888888888877766654322          1122222333322      22          6779999999


Q ss_pred             HHhcCCHHHHHHHhcC-CCCCCCCCCCCCCCHHHHHHHhCh----HHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChH
Q 047844          135 AVQSGSLDVVKILLGA-DPAFPYSANGSGETPLYLAAARAH----KEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCA  209 (264)
Q Consensus       135 A~~~~~~~~~~~Ll~~-g~~~~~~~~~~g~t~Lh~A~~~~~----~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~  209 (264)
                      |+..|+.+++++|++. |.++ +..|..|+||||+|+..++    .+++++|+++|++++.++..|.||||+|+..++.+
T Consensus       155 A~~~~~~~~v~~Ll~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  233 (285)
T 1wdy_A          155 AAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLG  233 (285)
T ss_dssp             HHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHcCCHHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence            9999999999999987 8885 7889999999999999999    99999999999999999999999999999999999


Q ss_pred             HHHHHHh-hhC
Q 047844          210 ASRCHKL-HRS  219 (264)
Q Consensus       210 ~~~~l~~-~~~  219 (264)
                      ++++|+. .+.
T Consensus       234 ~v~~Ll~~~g~  244 (285)
T 1wdy_A          234 LVQRLLEQEHI  244 (285)
T ss_dssp             HHHHHHHSSSC
T ss_pred             HHHHHHhccCC
Confidence            9999998 443

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=1.3e-34  Score=230.77  Aligned_cols=206  Identities=16%  Similarity=0.136  Sum_probs=165.6

Q ss_pred             cHHHHHHHcCCchHHhhhhh----hccccccc----CCCCCchhHHHHHH-hhhcCcCCCcccHHHHHHHHHhCCcc---
Q 047844            3 SDLYEAAAKGEIEPFNQLAI----DRQLGSLV----THKKNTVLHVNIIA-SYTQNKEGESVSTKFVERIIEMCPSL---   70 (264)
Q Consensus         3 ~~l~~A~~~g~~~~~~~l~~----~~~~~~~~----~~~g~t~L~~A~~~-~~g~~~~~~~~~~~~~~~ll~~~~~~---   70 (264)
                      ++||.||..|+.+.++.|++    .+...+..    +..|.||||+|+.+ ..|+        .+++++|++.+.+.   
T Consensus         7 ~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~--------~~~v~~Ll~~g~~~~~~   78 (260)
T 3jxi_A            7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGR--------NDTIPILLDIAEKTGNM   78 (260)
T ss_dssp             HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTB--------CTHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCC--------HHHHHHHHHhcccccch
Confidence            78999999999998777776    33232223    36799999999822 2488        99999999986431   


Q ss_pred             -------ceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHH
Q 047844           71 -------LLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDV  143 (264)
Q Consensus        71 -------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~  143 (264)
                             .+..|..|+||||+|+..|+.+++++|++.|++++..+......   ....+..+..|.||||+|+..|+.++
T Consensus        79 ~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~---~~~~~~~~~~g~tpL~~A~~~g~~~~  155 (260)
T 3jxi_A           79 REFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQ---PKDEGGYFYFGELPLSLAACTNQPHI  155 (260)
T ss_dssp             HHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCS---SSCCCCSCCSCSSHHHHHHHTTCHHH
T ss_pred             HhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccC---cccccccccCCCCHHHHHHHcCCHHH
Confidence                   34455689999999999999999999999998866521100000   00000111689999999999999999


Q ss_pred             HHHHhc---CCCCCCCCCCCCCCCHHHHHHHhCh---------HHHHHHHHhhCCCC-------CcCCCCCccHHhHHHh
Q 047844          144 VKILLG---ADPAFPYSANGSGETPLYLAAARAH---------KEISAEILQKCPSP-------AHEGPNGKTALHAAVC  204 (264)
Q Consensus       144 ~~~Ll~---~g~~~~~~~~~~g~t~Lh~A~~~~~---------~~~~~~Ll~~ga~~-------~~~~~~g~tpl~~A~~  204 (264)
                      +++|++   .|+++ +.+|..|+||||+|+..++         .+++++|+++|+++       +.+|..|.||||+|+.
T Consensus       156 v~~Ll~~~~~ga~~-~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~  234 (260)
T 3jxi_A          156 VHYLTENGHKQADL-RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAK  234 (260)
T ss_dssp             HHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             HHHHHhccccCCCC-cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHH
Confidence            999999   89996 7899999999999998877         79999999999998       6799999999999999


Q ss_pred             cCChHHHHHHHhhhCC
Q 047844          205 SRSCAASRCHKLHRSS  220 (264)
Q Consensus       205 ~~~~~~~~~l~~~~~~  220 (264)
                      .|+.+++++|+.++..
T Consensus       235 ~g~~~~v~~Ll~~g~~  250 (260)
T 3jxi_A          235 TGKIGIFQHIIRREIA  250 (260)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHhCCC
Confidence            9999999999998754

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.5e-33  Score=221.54  Aligned_cols=207  Identities=18%  Similarity=0.144  Sum_probs=141.2

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChH
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAP   81 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~   81 (264)
                      .++|++|+..|+.+++++|++.+...+..+..|.||||.|+  ..|+        .+++++|++.+.+.....+..|.||
T Consensus        10 ~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~--------~~~v~~Ll~~~~~~~~~~~~~~~t~   79 (240)
T 3eu9_A           10 TWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAA--INNR--------IDLVKYYISKGAIVDQLGGDLNSTP   79 (240)
T ss_dssp             GCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--HTTC--------HHHHHHHHHTTCCTTCCBTTTTBCH
T ss_pred             chHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHH--HhCC--------HHHHHHHHHcCCcchhhcCCcCCCh
Confidence            36888999999999999998843334447888889999999  8888        8999999998888655666668899


Q ss_pred             HHHHHHhCCHHHHHHHHHHhhhcchhhh----------hhchhhHHHHH------hcCCCCCCCChhhHHHhcCC-HHHH
Q 047844           82 LHVAARYGHAAVVEALIEIAKQESDQEI----------ESGVESTARHM------LGMKNDEEDTALHEAVQSGS-LDVV  144 (264)
Q Consensus        82 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~----------~~~~~~~~~~~------l~~~~~~g~t~L~~A~~~~~-~~~~  144 (264)
                      ||+|+..|+.+++++|++.|++++..+.          ..+.......+      ++..+..|.||||+|+..++ .+++
T Consensus        80 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  159 (240)
T 3eu9_A           80 LHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPT  159 (240)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTH
T ss_pred             hHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHH
Confidence            9999999999999999988877654211          11111122222      23355556666666664443 5666


Q ss_pred             HHHhcCCCCCCCCCCC-CCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhC
Q 047844          145 KILLGADPAFPYSANG-SGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRS  219 (264)
Q Consensus       145 ~~Ll~~g~~~~~~~~~-~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~  219 (264)
                      ++|++.|+++ +..+. .|.||||+|+..++.+++++|+++|++++.++..|.||+++|+..++.+++++|+..++
T Consensus       160 ~~L~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~  234 (240)
T 3eu9_A          160 RLLLTFNVSV-NLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQ  234 (240)
T ss_dssp             HHHHHTTCCT-TCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC-
T ss_pred             HHHHhcCCCc-chhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhh
Confidence            6666666664 33333 66677777777777777777777777776666667777777777777777776666554

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=4.7e-34  Score=229.87  Aligned_cols=178  Identities=21%  Similarity=0.199  Sum_probs=148.4

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCc------------
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPS------------   69 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~------------   69 (264)
                      .||||+|+..|+.+++++|++.+...+..+..|.||||+|+  ..|+        .+++++|++.++.            
T Consensus        46 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~--~~~~--------~~~v~~Ll~~~~~~~~~~~~~~~~~  115 (282)
T 1oy3_D           46 QTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLAC--RVRA--------HTCACVLLQPRPSHPRDASDTYLTQ  115 (282)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHT--TTTC--------HHHHHHHSSSCCSSCCCC-------
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH--HcCC--------cchhHhhhccCCCCchhhHHHHhhc
Confidence            58999999999999999999944444458999999999999  9999        9999999997754            


Q ss_pred             ----------------------------------cceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhh
Q 047844           70 ----------------------------------LLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVES  115 (264)
Q Consensus        70 ----------------------------------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~  115 (264)
                                                        .++..+..|.||||+|+..|+.+++++|++.|++++.         
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---------  186 (282)
T 1oy3_D          116 SQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNK---------  186 (282)
T ss_dssp             ----------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC---------
T ss_pred             ccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCC---------
Confidence                                              1456788999999999999999999999999988654         


Q ss_pred             HHHHHhcCCCC-CCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCC
Q 047844          116 TARHMLGMKND-EEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPN  194 (264)
Q Consensus       116 ~~~~~l~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~  194 (264)
                              .+. .|.||||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+..++.+++++|+++|++++.++..
T Consensus       187 --------~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~  257 (282)
T 1oy3_D          187 --------PEPTCGRTPLHLAVEAQAASVLELLLKAGADP-TARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGD  257 (282)
T ss_dssp             --------CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC--
T ss_pred             --------CCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-cccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCc
Confidence                    554 5999999999999999999999999996 789999999999999999999999999999999999999


Q ss_pred             CccHHhHHHhcCC
Q 047844          195 GKTALHAAVCSRS  207 (264)
Q Consensus       195 g~tpl~~A~~~~~  207 (264)
                      |.||+++|....+
T Consensus       258 g~tpl~~a~~~~~  270 (282)
T 1oy3_D          258 KLSPCSSSGSDSD  270 (282)
T ss_dssp             -------------
T ss_pred             ccccccccCCccc
Confidence            9999999987664

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1e-33  Score=237.18  Aligned_cols=195  Identities=16%  Similarity=0.124  Sum_probs=173.3

Q ss_pred             CcHHHHHHHcCCchHHhhhh--------hhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCcccee
Q 047844            2 NSDLYEAAAKGEIEPFNQLA--------IDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ   73 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~--------~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~   73 (264)
                      .||||+||..|+.+++++|+        +.+...+..|..|.||||+|+  ..|+        .+++++|++.+.+ ++.
T Consensus       126 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~--~~g~--------~~iv~~Ll~~ga~-~~~  194 (373)
T 2fo1_E          126 RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAV--LARR--------RRLVAYLMKAGAD-PTI  194 (373)
T ss_dssp             CCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHH--HHTC--------HHHHHHHHHTTCC-SCC
T ss_pred             CCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHH--HcCh--------HHHHHHHHHCCCC-Ccc
Confidence            48999999999999999987        433334448999999999999  9999        9999999999999 788


Q ss_pred             cCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcC---CHHHHHHHhcC
Q 047844           74 VNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSG---SLDVVKILLGA  150 (264)
Q Consensus        74 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~---~~~~~~~Ll~~  150 (264)
                      .+..|.||||+|+..|+.+++++|++.+...              ..++..+..|.||||+|+..+   +.+++++|++.
T Consensus       195 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~--------------~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~  260 (373)
T 2fo1_E          195 YNKSERSALHQAAANRDFGMMVYMLNSTKLK--------------GDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEK  260 (373)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHTTSHHHH--------------HTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHhcCccc--------------cChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHC
Confidence            9999999999999999999999999987311              114558999999999999998   89999999999


Q ss_pred             CCCCCC-------CCCCCCCCHHHHHHHhChHHHHHHHHhhC-CCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhCCC
Q 047844          151 DPAFPY-------SANGSGETPLYLAAARAHKEISAEILQKC-PSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSSR  221 (264)
Q Consensus       151 g~~~~~-------~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~  221 (264)
                      |+++..       ..|..|+||||+|+..|+.+++++|++.+ ++++.+|..|.||||+|+..|+.+++++|+.+++..
T Consensus       261 g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~  339 (373)
T 2fo1_E          261 GAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV  339 (373)
T ss_dssp             TCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred             CCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence            998632       25778999999999999999999999886 999999999999999999999999999999987653

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=2.1e-33  Score=213.92  Aligned_cols=160  Identities=19%  Similarity=0.179  Sum_probs=152.7

Q ss_pred             cCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhh
Q 047844           30 VTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEI  109 (264)
Q Consensus        30 ~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~  109 (264)
                      +|..|.||||.|+  ..|+        .+++++|++.+.+ ++..+..|+||||+|+..|+.+++++|++.|++++.   
T Consensus        31 ~d~~g~t~L~~A~--~~g~--------~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~---   96 (192)
T 2rfm_A           31 RDSYNRTPLMVAC--MLGM--------ENAIDKLVENFDK-LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT---   96 (192)
T ss_dssp             CCTTCCCHHHHHH--HHTC--------GGGHHHHHHHHCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC---
T ss_pred             cCCCCCCHHHHHH--HcCC--------HHHHHHHHHhccc-cccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCC---
Confidence            7999999999999  9999        9999999999988 788899999999999999999999999999987544   


Q ss_pred             hhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCC
Q 047844          110 ESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPA  189 (264)
Q Consensus       110 ~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~  189 (264)
                                    ++..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..++.+++++|+++|++++
T Consensus        97 --------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  161 (192)
T 2rfm_A           97 --------------KDFSGKTPLMWSIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELGADIS  161 (192)
T ss_dssp             --------------CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             --------------CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence                          8899999999999999999999999999996 7889999999999999999999999999999999


Q ss_pred             cCCCCCccHHhHHHhcCChHHHHHHHhhh
Q 047844          190 HEGPNGKTALHAAVCSRSCAASRCHKLHR  218 (264)
Q Consensus       190 ~~~~~g~tpl~~A~~~~~~~~~~~l~~~~  218 (264)
                      .+|..|.||+++|+..++.+++++|+.++
T Consensus       162 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          162 ARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             CBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            99999999999999999999999998875

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=100.00  E-value=5.4e-34  Score=229.32  Aligned_cols=188  Identities=22%  Similarity=0.276  Sum_probs=171.6

Q ss_pred             cHHHHHHHcCCchHHhhhhhh--cccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCCh
Q 047844            3 SDLYEAAAKGEIEPFNQLAID--RQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDA   80 (264)
Q Consensus         3 ~~l~~A~~~g~~~~~~~l~~~--~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t   80 (264)
                      +++|.|+..|+++.++.+++.  ....+..|.+|.||||+|+  ..|+        .+++++|++.+...++..+..|.|
T Consensus        78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~--~~g~--------~~~v~~Ll~~g~~~~~~~~~~g~t  147 (276)
T 4hbd_A           78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSV--SHAN--------FPVVQQLLDSGVCKVDKQNRAGYS  147 (276)
T ss_dssp             TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHH--HTTC--------HHHHHHHHHTSCCCTTCCCTTSCC
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHH--HCCC--------HHHHHHHHHCCCCcCCCCCCCCCC
Confidence            578899999999999999882  1113338999999999999  9999        999999999998558999999999


Q ss_pred             HHHHHH-----HhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCC
Q 047844           81 PLHVAA-----RYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFP  155 (264)
Q Consensus        81 ~L~~A~-----~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~  155 (264)
                      |||+|+     ..++.+++++|++.|.....                 .+..|.||||+|+..|+.+++++|++.|+++ 
T Consensus       148 pL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~-----------------~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~-  209 (276)
T 4hbd_A          148 PIMLTALATLKTQDDIETVLQLFRLGNINAK-----------------ASQAGQTALMLAVSHGRVDVVKALLACEADV-  209 (276)
T ss_dssp             HHHHGGGCCCCSHHHHHHHHHHHHHSCTTCC-----------------CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHcCCCccc-----------------cCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-
Confidence            999999     66889999999999876443                 7888999999999999999999999999996 


Q ss_pred             CCCCCCCCCHHHHHHHhChHHHHHHHHh-hCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhh
Q 047844          156 YSANGSGETPLYLAAARAHKEISAEILQ-KCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHR  218 (264)
Q Consensus       156 ~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~  218 (264)
                      +..|..|+||||+|+..|+.+++++|++ .|++++.+|..|.|||++|+..|+.+++++|+.+.
T Consensus       210 n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          210 NVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             CCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            7899999999999999999999999999 89999999999999999999999999999998864

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=2.8e-33  Score=231.35  Aligned_cols=209  Identities=19%  Similarity=0.193  Sum_probs=158.1

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccC-CCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCcc----------
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVT-HKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSL----------   70 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~-~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~----------   70 (264)
                      +|+||.|+..|++++|++|++.+-..+.++ ..|+||||+|+  ..|+        .+++++|+++++++          
T Consensus        26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~--~~g~--------~~iv~~Ll~~ga~~~~~~~~~~~~   95 (337)
T 4g8k_A           26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAV--QMSR--------EDIVELLLRHGADPVLRKKNGATP   95 (337)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHH--HTTC--------HHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             ChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHH--HcCC--------HHHHHHHHHcCCchhhhccCCCch
Confidence            479999999999999999999332222245 45999999999  9999        99999999987652          


Q ss_pred             ----------------------ceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhh-------------------
Q 047844           71 ----------------------LLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEI-------------------  109 (264)
Q Consensus        71 ----------------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-------------------  109 (264)
                                            ++..|..|.||||+|+..|+.+++++|++.|++++....                   
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A  175 (337)
T 4g8k_A           96 FILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA  175 (337)
T ss_dssp             HHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHH
T ss_pred             hHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHH
Confidence                                  345678899999999999999999999999987654321                   


Q ss_pred             -hhchhhHHHHH-------hcCCCCCCCChhhHHHhcCC----HHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHH
Q 047844          110 -ESGVESTARHM-------LGMKNDEEDTALHEAVQSGS----LDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEI  177 (264)
Q Consensus       110 -~~~~~~~~~~~-------l~~~~~~g~t~L~~A~~~~~----~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~  177 (264)
                       ..+....++.+       ++.++..|.|+++.++..+.    ..++++|+++|+++ +.+|..|+||||+|+..++.++
T Consensus       176 ~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~-n~~d~~g~t~L~~a~~~~~~~~  254 (337)
T 4g8k_A          176 AEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGL  254 (337)
T ss_dssp             HHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCT-TCCCGGGCCHHHHHHHTTCHHH
T ss_pred             HHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhhhhHH
Confidence             11111122222       23455556666665544322    34556666666664 5677788899999999999999


Q ss_pred             HHHHHhh-CCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhCCC
Q 047844          178 SAEILQK-CPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSSR  221 (264)
Q Consensus       178 ~~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~  221 (264)
                      ++.|+.. |++++.+|..|+||||+|+..|+.+++++|+.+++..
T Consensus       255 v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~  299 (337)
T 4g8k_A          255 VQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST  299 (337)
T ss_dssp             HHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSS
T ss_pred             HHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            9888875 7889999999999999999999999999998887654

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=3.4e-33  Score=217.52  Aligned_cols=183  Identities=17%  Similarity=0.224  Sum_probs=163.3

Q ss_pred             cCCchHHhhhhhh-cccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhC
Q 047844           11 KGEIEPFNQLAID-RQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYG   89 (264)
Q Consensus        11 ~g~~~~~~~l~~~-~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g   89 (264)
                      .|+.+++++|++. .+.....|..|.||||+|+  ..|+        .+++++|++.+.+ ++..+..|+||||+|+..|
T Consensus         1 gg~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~--~~g~--------~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~   69 (223)
T 2f8y_A            1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAA--RYSR--------SDAAKRLLEASAD-ANIQDNMGRTPLHAAVSAD   69 (223)
T ss_dssp             ----CCEETTEETTCCTTCCCTTTCCCHHHHHH--HTTC--------HHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred             CCcHHHHHHHHHcCCCcccccCCCCCchHHHHH--HcCC--------HHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcC
Confidence            3788999999983 3333335889999999999  9999        9999999999988 7889999999999999999


Q ss_pred             CHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHH
Q 047844           90 HAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLA  169 (264)
Q Consensus        90 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A  169 (264)
                      +.+++++|++.++..                ++..+..|.||||+|+..|+.+++++|++.|+++ +..|..|+||||+|
T Consensus        70 ~~~~v~~Ll~~~~~~----------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A  132 (223)
T 2f8y_A           70 AQGVFQILIRNRATD----------------LDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWA  132 (223)
T ss_dssp             CHHHHHHHHHBTTSC----------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHH
T ss_pred             CHHHHHHHHHcCCCC----------------cccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHH
Confidence            999999999987621                3447889999999999999999999999999995 78899999999999


Q ss_pred             HHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhCCC
Q 047844          170 AARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSSR  221 (264)
Q Consensus       170 ~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~  221 (264)
                      +..++.+++++|+++|++++.++..|.||||+|+..++.+++++|+.+++..
T Consensus       133 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  184 (223)
T 2f8y_A          133 AAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANR  184 (223)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9999999999999999999999999999999999999999999999988653

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=7.2e-33  Score=217.63  Aligned_cols=179  Identities=19%  Similarity=0.145  Sum_probs=145.0

Q ss_pred             cCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhh
Q 047844           30 VTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEI  109 (264)
Q Consensus        30 ~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~  109 (264)
                      .|..|.|+|+.|+  ..|+        .+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|++.+........
T Consensus         5 ~d~~~~~~l~~A~--~~g~--------~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~   73 (240)
T 3eu9_A            5 IDDYSTWDIVKAT--QYGI--------YERCRELVEAGYD-VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGG   73 (240)
T ss_dssp             CSCGGGCCHHHHH--HTTC--------HHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBT
T ss_pred             cccccchHHHHHH--HcCC--------hHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcC
Confidence            6889999999999  9999        9999999999988 788899999999999999999999999999987654322


Q ss_pred             h-----------hchhhHHHHHh------cCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHh
Q 047844          110 E-----------SGVESTARHML------GMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAAR  172 (264)
Q Consensus       110 ~-----------~~~~~~~~~~l------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~  172 (264)
                      .           .+....+..++      +..+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..
T Consensus        74 ~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~  152 (240)
T 3eu9_A           74 DLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYR  152 (240)
T ss_dssp             TTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred             CcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHh
Confidence            1           22222333333      346677888888888888888888888888875 67778888888888866


Q ss_pred             Ch-HHHHHHHHhhCCCCCcCCC-CCccHHhHHHhcCChHHHHHHHhhhCC
Q 047844          173 AH-KEISAEILQKCPSPAHEGP-NGKTALHAAVCSRSCAASRCHKLHRSS  220 (264)
Q Consensus       173 ~~-~~~~~~Ll~~ga~~~~~~~-~g~tpl~~A~~~~~~~~~~~l~~~~~~  220 (264)
                      ++ .+++++|++.|++++..+. .|.||||+|+..++.+++++|+.+++.
T Consensus       153 ~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  202 (240)
T 3eu9_A          153 THSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN  202 (240)
T ss_dssp             CCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC
T ss_pred             CChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            65 6788888888888888876 788888888888888888888887654

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.3e-32  Score=227.90  Aligned_cols=192  Identities=24%  Similarity=0.272  Sum_probs=172.6

Q ss_pred             CcHHHHHHHcCCchHHhhhhhh-cccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCCh
Q 047844            2 NSDLYEAAAKGEIEPFNQLAID-RQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDA   80 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~-~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t   80 (264)
                      .++||.||..|+.+.++.|+.. ....+..|..|.||||+|+  ..|+        .+++++|++.+.+ ++..|..|+|
T Consensus        25 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~--~~g~--------~~~v~~Ll~~g~~-~~~~~~~g~t   93 (351)
T 3utm_A           25 KDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAA--GYNR--------VRIVQLLLQHGAD-VHAKDKGGLV   93 (351)
T ss_dssp             HHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHH--HTTC--------HHHHHHHHHTTCC-TTCCCTTCCC
T ss_pred             chhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHH--HcCC--------HHHHHHHHHcCCC-CCccCCCCCc
Confidence            3799999999999999999982 3333447899999999999  9999        9999999999998 7889999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCC----
Q 047844           81 PLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPY----  156 (264)
Q Consensus        81 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~----  156 (264)
                      |||+|+..|+.+++++|+++|++++.                 .+..|.||||+|+..|+.+++++|++.|++...    
T Consensus        94 ~L~~A~~~g~~~iv~~Ll~~g~~~~~-----------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  156 (351)
T 3utm_A           94 PLHNACSYGHYEVTELLLKHGACVNA-----------------MDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCH  156 (351)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTC-----------------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             HHHHHHHCCCHHHHHHHHHCCCCCCC-----------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCC
Confidence            99999999999999999999988544                 889999999999999999999999999987521    


Q ss_pred             -------------------------------------------------CCCCCCCCHHHHHHHh---ChHHHHHHHHhh
Q 047844          157 -------------------------------------------------SANGSGETPLYLAAAR---AHKEISAEILQK  184 (264)
Q Consensus       157 -------------------------------------------------~~~~~g~t~Lh~A~~~---~~~~~~~~Ll~~  184 (264)
                                                                       ..+..|.||||+|+..   +..+++++|++.
T Consensus       157 g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~  236 (351)
T 3utm_A          157 GKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRK  236 (351)
T ss_dssp             SCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHT
T ss_pred             CCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHc
Confidence                                                             1345678999999998   678999999999


Q ss_pred             CCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhCCC
Q 047844          185 CPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSSR  221 (264)
Q Consensus       185 ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~  221 (264)
                      |++++.++..|.||||+|+..++.+++++|+.+++..
T Consensus       237 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~  273 (351)
T 3utm_A          237 GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKM  273 (351)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            9999999999999999999999999999999987653

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=5e-33  Score=208.15  Aligned_cols=159  Identities=21%  Similarity=0.236  Sum_probs=125.0

Q ss_pred             CCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhch
Q 047844           34 KNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGV  113 (264)
Q Consensus        34 g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~  113 (264)
                      +.||||.|+  ..|+        .+++++|++.++..++..+..|+||||+|+..|+.+++++|++.|++++.       
T Consensus         2 ~~~~L~~A~--~~g~--------~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-------   64 (172)
T 3v30_A            2 DSLSIHQLA--AQGE--------LDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI-------   64 (172)
T ss_dssp             --CCHHHHH--HTTC--------HHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC-------
T ss_pred             chhhHHHHH--HcCC--------HHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchh-------
Confidence            457788888  8888        88888888887776777778888888888888888888888887776443       


Q ss_pred             hhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCC
Q 047844          114 ESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGP  193 (264)
Q Consensus       114 ~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~  193 (264)
                                ++..|.||||+|+..|+.+++++|++.|+++ +..|..|+||||+|+..++.+++++|+++|++++.++.
T Consensus        65 ----------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  133 (172)
T 3v30_A           65 ----------LAKERESALSLASTGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEAD  133 (172)
T ss_dssp             ----------CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             ----------hcccCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC
Confidence                      6777888888888888888888888888775 67777788888888888888888888888888888888


Q ss_pred             CCccHHhHHHhcCChHHHHHHHhhhCC
Q 047844          194 NGKTALHAAVCSRSCAASRCHKLHRSS  220 (264)
Q Consensus       194 ~g~tpl~~A~~~~~~~~~~~l~~~~~~  220 (264)
                      .|.||+++|+..++.+++++|+.+++.
T Consensus       134 ~g~t~l~~A~~~~~~~~~~~L~~~~~~  160 (172)
T 3v30_A          134 SGYTPMDLAVALGYRKVQQVIENHILK  160 (172)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHhCcHHHHHHHHHHHHH
Confidence            888888888888888888888777664

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=2.9e-32  Score=203.04  Aligned_cols=158  Identities=23%  Similarity=0.253  Sum_probs=150.1

Q ss_pred             CCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhc
Q 047844           33 KKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESG  112 (264)
Q Consensus        33 ~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~  112 (264)
                      .|.||||.|+  ..|+        .+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.|++++.      
T Consensus         2 ~~~t~L~~A~--~~g~--------~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------   64 (167)
T 3v31_A            2 ANSLSVHQLA--AQGE--------MLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL------   64 (167)
T ss_dssp             TTCCCHHHHH--HTTC--------HHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC------
T ss_pred             CCcchHHHHH--HCCC--------HHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC------
Confidence            5789999999  9999        9999999999988 888999999999999999999999999999888544      


Q ss_pred             hhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCC
Q 047844          113 VESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEG  192 (264)
Q Consensus       113 ~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~  192 (264)
                                 .+..|.||||+|+..|+.+++++|++.|+++ +..|..|+||||+|+..++.+++++|+++|++++.++
T Consensus        65 -----------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  132 (167)
T 3v31_A           65 -----------LGKGRESALSLACSKGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIET  132 (167)
T ss_dssp             -----------CCTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             -----------cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence                       8899999999999999999999999999996 7889999999999999999999999999999999999


Q ss_pred             CCCccHHhHHHhcCChHHHHHHHhhhC
Q 047844          193 PNGKTALHAAVCSRSCAASRCHKLHRS  219 (264)
Q Consensus       193 ~~g~tpl~~A~~~~~~~~~~~l~~~~~  219 (264)
                      ..|.||+++|+..++.+++++|+.+..
T Consensus       133 ~~g~t~l~~A~~~~~~~~~~~L~~~~~  159 (167)
T 3v31_A          133 DSGYNSMDLAVALGYRSVQQVIESHLL  159 (167)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHHHHH
Confidence            999999999999999999999988764

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=5.1e-32  Score=202.65  Aligned_cols=162  Identities=20%  Similarity=0.181  Sum_probs=134.5

Q ss_pred             cHHHHHHHcCCchHHhhhhhhcccccccC-CCC-----CchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCC
Q 047844            3 SDLYEAAAKGEIEPFNQLAIDRQLGSLVT-HKK-----NTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNA   76 (264)
Q Consensus         3 ~~l~~A~~~g~~~~~~~l~~~~~~~~~~~-~~g-----~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~   76 (264)
                      +|||+|+..|+   ++.+..-....  .+ .+.     .||||+|+  ..|+        .+++++|++.+.+ ++..+.
T Consensus         4 ~~L~~A~~~g~---~~~v~~ll~~~--~~~~~~~~~~g~t~L~~A~--~~~~--------~~~v~~Ll~~g~~-~~~~~~   67 (172)
T 3v30_A            4 LSIHQLAAQGE---LDQLKEHLRKG--DNLVNKPDERGFTPLIWAS--AFGE--------IETVRFLLEWGAD-PHILAK   67 (172)
T ss_dssp             CCHHHHHHTTC---HHHHHHHHTTC--SGGGGCCCTTSCCHHHHHH--HTTC--------HHHHHHHHHHTCC-TTCCCT
T ss_pred             hhHHHHHHcCC---HHHHHHHHHcC--cccccCCCCCCCCHHHHHH--HcCC--------HHHHHHHHHcCCC-chhhcc
Confidence            68999999886   43333222221  11 222     28999999  9999        9999999999988 788999


Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCC
Q 047844           77 KGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPY  156 (264)
Q Consensus        77 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~  156 (264)
                      .|.||||+|+..|+.+++++|++.|++++.                 ++..|.||||+|+..|+.+++++|++.|+++ +
T Consensus        68 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-----------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~  129 (172)
T 3v30_A           68 ERESALSLASTGGYTDIVGLLLERDVDINI-----------------YDWNGGTPLLYAVRGNHVKCVEALLARGADL-T  129 (172)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHTTTCCTTC-----------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-T
T ss_pred             cCCCHHHHHHHCCCHHHHHHHHHcCCCCCC-----------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-c
Confidence            999999999999999999999999887544                 8899999999999999999999999999996 7


Q ss_pred             CCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccH
Q 047844          157 SANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTA  198 (264)
Q Consensus       157 ~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tp  198 (264)
                      ..|..|.||||+|+..++.+++++|+++|+++..++..|.||
T Consensus       130 ~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          130 TEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP  171 (172)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred             ccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence            889999999999999999999999999999999888888876

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=3.6e-32  Score=202.96  Aligned_cols=160  Identities=23%  Similarity=0.242  Sum_probs=148.5

Q ss_pred             cCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhh
Q 047844           30 VTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEI  109 (264)
Q Consensus        30 ~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~  109 (264)
                      ....+.++|+.|+  ..|+        .+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.|++++.   
T Consensus        10 ~~~~~~~~l~~A~--~~g~--------~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~---   75 (169)
T 2y1l_E           10 HGSDLGKKLLEAA--RAGR--------DDEVRILMANGAD-VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA---   75 (169)
T ss_dssp             ---CHHHHHHHHH--HHTC--------HHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC---
T ss_pred             CCCcccchHHHHH--HcCC--------HHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc---
Confidence            4556789999999  9999        9999999999988 788999999999999999999999999999887544   


Q ss_pred             hhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCC
Q 047844          110 ESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPA  189 (264)
Q Consensus       110 ~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~  189 (264)
                                    .+..|.||||+|+..|+.+++++|++.|+++ +..|..|+||||+|+..++.+++++|+++|++++
T Consensus        76 --------------~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  140 (169)
T 2y1l_E           76 --------------VDHAGMTPLRLAALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN  140 (169)
T ss_dssp             --------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             --------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence                          8899999999999999999999999999996 7889999999999999999999999999999999


Q ss_pred             cCCCCCccHHhHHHhcCChHHHHHHHhhh
Q 047844          190 HEGPNGKTALHAAVCSRSCAASRCHKLHR  218 (264)
Q Consensus       190 ~~~~~g~tpl~~A~~~~~~~~~~~l~~~~  218 (264)
                      .+|..|.||+++|+..++.+++++|+.++
T Consensus       141 ~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          141 AQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            99999999999999999999999998753

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=3.8e-32  Score=220.74  Aligned_cols=202  Identities=19%  Similarity=0.138  Sum_probs=165.2

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChH
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAP   81 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~   81 (264)
                      .||||+||..|+.+++++|++.+...+..|..|.||||+|+  ..|+        .+++++|++.+.+ ++..+..|.||
T Consensus        74 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~--~~g~--------~~~v~~Ll~~g~~-~~~~~~~g~t~  142 (299)
T 1s70_B           74 LTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAA--SCGY--------LDIAEYLISQGAH-VGAVNSEGDTP  142 (299)
T ss_dssp             CBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--HHTC--------HHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH--HcCC--------HHHHHHHHhCCCC-CCCcCCCCCCH
Confidence            48999999999999999999954444558999999999999  9999        9999999999998 78899999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHhh-hcchhhhhhchh--hHHHHH-------hcCCCCCCCChhhHHHhcCCHHHHHHHhcCC
Q 047844           82 LHVAARYGHAAVVEALIEIAK-QESDQEIESGVE--STARHM-------LGMKNDEEDTALHEAVQSGSLDVVKILLGAD  151 (264)
Q Consensus        82 L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~~--~~~~~~-------l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  151 (264)
                      ||+|+..++.+++++++.... +...........  ......       ....+..|.||||+|+..|+.+++++|++.|
T Consensus       143 l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  222 (299)
T 1s70_B          143 LDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR  222 (299)
T ss_dssp             HHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTT
T ss_pred             HHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcC
Confidence            999999999999998887542 222111100000  000111       1235678999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHh
Q 047844          152 PAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKL  216 (264)
Q Consensus       152 ~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~  216 (264)
                      +++ +..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||+++|+... .+.++.++.
T Consensus       223 ~d~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~-~~~l~~l~~  285 (299)
T 1s70_B          223 YDV-NIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDI-LGYLEELQK  285 (299)
T ss_dssp             CCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSGG-GHHHHHHHH
T ss_pred             CCC-CCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHH-HHHHHHHHH
Confidence            996 789999999999999999999999999999999999999999999997643 444444443

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=2.5e-32  Score=202.26  Aligned_cols=157  Identities=18%  Similarity=0.207  Sum_probs=114.0

Q ss_pred             CCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhc
Q 047844           33 KKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESG  112 (264)
Q Consensus        33 ~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~  112 (264)
                      ...||||.|+  ..|+        .+++++|++.+.+ ++..+..|+||||+|+. |+.+++++|++.|++++.      
T Consensus         4 ~~~~~L~~A~--~~g~--------~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~------   65 (162)
T 1ihb_A            4 PWGNELASAA--ARGD--------LEQLTSLLQNNVN-VNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDL------   65 (162)
T ss_dssp             -CHHHHHHHH--HHTC--------HHHHHHHTTSCCC-TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTC------
T ss_pred             hHhhHHHHHH--HcCC--------HHHHHHHHhCCCC-ccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCC------
Confidence            3457777777  7777        7777777777766 56677777777777777 777777777777666433      


Q ss_pred             hhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCC-CCcC
Q 047844          113 VESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPS-PAHE  191 (264)
Q Consensus       113 ~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~-~~~~  191 (264)
                                 ++..|.||||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+..|+.+++++|+++|++ ++.+
T Consensus        66 -----------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  133 (162)
T 1ihb_A           66 -----------KDRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR  133 (162)
T ss_dssp             -----------CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCC
T ss_pred             -----------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCc
Confidence                       6677777777777777777777777777774 56677777777777777777777777777776 4777


Q ss_pred             CCCCccHHhHHHhcCChHHHHHHHhhhC
Q 047844          192 GPNGKTALHAAVCSRSCAASRCHKLHRS  219 (264)
Q Consensus       192 ~~~g~tpl~~A~~~~~~~~~~~l~~~~~  219 (264)
                      +..|.||+|+|+..++.+++++|+.+++
T Consensus       134 ~~~g~t~l~~A~~~~~~~~~~~Ll~~GA  161 (162)
T 1ihb_A          134 NHKGDTACDLARLYGRNEVVSLMQANGA  161 (162)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTC-
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCC
Confidence            7777777777777777777777777654

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.98  E-value=5.4e-32  Score=200.45  Aligned_cols=154  Identities=24%  Similarity=0.246  Sum_probs=128.5

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhccccccc---CCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCC
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLV---THKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKG   78 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~---~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g   78 (264)
                      .+|||.|+..|+   ++.+-.=.......   +..|.||||+|+  . |+        .+++++|++.+.+ ++..+..|
T Consensus         6 ~~~L~~A~~~g~---~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~--~-~~--------~~~v~~Ll~~g~~-~~~~~~~g   70 (162)
T 1ihb_A            6 GNELASAAARGD---LEQLTSLLQNNVNVNAQNGFGRTALQVMK--L-GN--------PEIARRLLLRGAN-PDLKDRTG   70 (162)
T ss_dssp             HHHHHHHHHHTC---HHHHHHHTTSCCCTTCCCTTSCCHHHHCC--S-SC--------HHHHHHHHHTTCC-TTCCCTTS
T ss_pred             hhHHHHHHHcCC---HHHHHHHHhCCCCccccCccCccHHHHHH--c-Cc--------HHHHHHHHHcCCC-CCCCCCCC
Confidence            478999998885   33332233322111   245889999999  8 99        9999999999988 78889999


Q ss_pred             ChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCC
Q 047844           79 DAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSA  158 (264)
Q Consensus        79 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~  158 (264)
                      +||||+|+..|+.+++++|++.|++++.                 ++..|.||||+|+..|+.+++++|++.|++..+..
T Consensus        71 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-----------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  133 (162)
T 1ihb_A           71 FAVIHDAARAGFLDTLQTLLEFQADVNI-----------------EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR  133 (162)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTC-----------------CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCC-----------------cCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCc
Confidence            9999999999999999999999887544                 88899999999999999999999999999855788


Q ss_pred             CCCCCCHHHHHHHhChHHHHHHHHhhCCC
Q 047844          159 NGSGETPLYLAAARAHKEISAEILQKCPS  187 (264)
Q Consensus       159 ~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~  187 (264)
                      +..|.||||+|+..++.+++++|+++|++
T Consensus       134 ~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          134 NHKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            99999999999999999999999999975

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.98  E-value=4.5e-32  Score=201.59  Aligned_cols=161  Identities=21%  Similarity=0.242  Sum_probs=147.8

Q ss_pred             cCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhh
Q 047844           30 VTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEI  109 (264)
Q Consensus        30 ~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~  109 (264)
                      .+..|.|+||.|+  ..|+        .+++++|++.+....+..+..|+||||+|+..|+.+++++|++.|++++.   
T Consensus         4 ~~~~~~~~l~~A~--~~g~--------~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~---   70 (165)
T 3twr_A            4 GNSEADRQLLEAA--KAGD--------VETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA---   70 (165)
T ss_dssp             --CHHHHHHHHHH--HHTC--------HHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC---
T ss_pred             CcchhhHHHHHHH--HhCC--------HHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCc---
Confidence            5778899999999  9999        99999999977766788889999999999999999999999999988544   


Q ss_pred             hhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCC
Q 047844          110 ESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPA  189 (264)
Q Consensus       110 ~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~  189 (264)
                                    ++..|.||||+|+..|+.+++++|++.|+++ +..|..|+||||+|+..++.+++++|+++|++++
T Consensus        71 --------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  135 (165)
T 3twr_A           71 --------------KDKGGLVPLHNACSYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT  135 (165)
T ss_dssp             --------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             --------------cCCCCCCHHHHHHHcCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc
Confidence                          8899999999999999999999999999996 7889999999999999999999999999999999


Q ss_pred             cCCCCCccHHhHHHhcCChHHHHHHHhhhC
Q 047844          190 HEGPNGKTALHAAVCSRSCAASRCHKLHRS  219 (264)
Q Consensus       190 ~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~  219 (264)
                      .+|..|.||+++|.. ++.+++++|+..++
T Consensus       136 ~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          136 KKNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             CCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             ccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence            999999999999877 89999999987653

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.98  E-value=2.1e-31  Score=195.58  Aligned_cols=151  Identities=20%  Similarity=0.244  Sum_probs=142.0

Q ss_pred             CCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhch
Q 047844           34 KNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGV  113 (264)
Q Consensus        34 g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~  113 (264)
                      ..|+|+.|+  ..|+        .+++++|++.+.+. + .+..|.||||+|+..|+.+++++|++.|++++.       
T Consensus         2 ~~~~L~~A~--~~g~--------~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-------   62 (153)
T 1awc_B            2 LGKKLLEAA--RAGQ--------DDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA-------   62 (153)
T ss_dssp             HHHHHHHHH--HHTC--------HHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC-------
T ss_pred             ccHHHHHHH--HcCC--------HHHHHHHHHcCCCC-C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-------
Confidence            358999999  9999        99999999999873 3 688999999999999999999999999887544       


Q ss_pred             hhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCC
Q 047844          114 ESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGP  193 (264)
Q Consensus       114 ~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~  193 (264)
                                ++..|.||||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+..++.+++++|+++|++++.++.
T Consensus        63 ----------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  131 (153)
T 1awc_B           63 ----------RTKVDRTPLHMAASEGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSK  131 (153)
T ss_dssp             ----------CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             ----------CCCCCCCHHHHHHHcChHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC
Confidence                      8899999999999999999999999999996 78899999999999999999999999999999999999


Q ss_pred             CCccHHhHHHhcCChHHHHHH
Q 047844          194 NGKTALHAAVCSRSCAASRCH  214 (264)
Q Consensus       194 ~g~tpl~~A~~~~~~~~~~~l  214 (264)
                      .|.||+++|+..++.+++++|
T Consensus       132 ~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          132 FCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHh
Confidence            999999999999999999987

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.98  E-value=2e-31  Score=200.71  Aligned_cols=162  Identities=21%  Similarity=0.197  Sum_probs=150.1

Q ss_pred             CCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhh
Q 047844           32 HKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIES  111 (264)
Q Consensus        32 ~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~  111 (264)
                      ..+.++|+.|+  ..|+        .+++++|++.++..++..+..|+||||+|+..|+.+++++|++.|++++.     
T Consensus         3 ~~~~~~l~~A~--~~g~--------~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-----   67 (179)
T 3f6q_A            3 PEFMDDIFTQC--REGN--------AVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV-----   67 (179)
T ss_dssp             ----CCHHHHH--HHTC--------HHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-----
T ss_pred             HHHHHHHHHHH--HcCC--------HHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCC-----
Confidence            46789999999  9999        99999999997776889999999999999999999999999999988544     


Q ss_pred             chhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcC
Q 047844          112 GVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHE  191 (264)
Q Consensus       112 ~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~  191 (264)
                                  ++..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..++.+++++|+++|++++.+
T Consensus        68 ------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~  134 (179)
T 3f6q_A           68 ------------MNRGDDTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSIC  134 (179)
T ss_dssp             ------------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBC
T ss_pred             ------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchh
Confidence                        8899999999999999999999999999996 788999999999999999999999999999999999


Q ss_pred             CCCCccHHhHHHhcCChHHHHHHHhhhCCC
Q 047844          192 GPNGKTALHAAVCSRSCAASRCHKLHRSSR  221 (264)
Q Consensus       192 ~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~  221 (264)
                      |..|.||+++|+..++.+++++|+.+++..
T Consensus       135 ~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~  164 (179)
T 3f6q_A          135 NKYGEMPVDKAKAPLRELLRERAEKMGQNL  164 (179)
T ss_dssp             CTTSCCGGGGSCHHHHHHHHHHHHHTTCCC
T ss_pred             ccCCCCcHHHHHHHHHHHHHHHHHHhhcCc
Confidence            999999999999999999999999988654

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.98  E-value=2.8e-32  Score=220.31  Aligned_cols=182  Identities=14%  Similarity=0.087  Sum_probs=164.7

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCC-Ch
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKG-DA   80 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g-~t   80 (264)
                      .||||+|+..|+.+++++|++.+...+..+..|.||||+|+  ..|+        .+++++|++.+.+ ++..+..| .|
T Consensus        63 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~--~~g~--------~~~v~~Ll~~ga~-~~~~~~~g~~t  131 (285)
T 3kea_A           63 EFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAV--DSGN--------MQTVKLFVKKNWR-LMFYGKTGWKT  131 (285)
T ss_dssp             CCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHH--HTTC--------HHHHHHHHHHCGG-GGGCSSSGGGS
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHH--HcCC--------HHHHHHHHhcCCC-CCccCCCCCCC
Confidence            48999999999999999999944444448999999999999  9999        9999999999998 78899999 79


Q ss_pred             HHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCC
Q 047844           81 PLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANG  160 (264)
Q Consensus        81 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  160 (264)
                      |||+|+..|+.+++++|++.|+....                  ...|.||||+|+..|+.+++++|++.|+++ +..|.
T Consensus       132 ~L~~A~~~~~~~~v~~Ll~~g~~~~~------------------~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~-n~~~~  192 (285)
T 3kea_A          132 SFYHAVMLNDVSIVSYFLSEIPSTFD------------------LAILLSCIHITIKNGHVDMMILLLDYMTST-NTNNS  192 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTSCTTCC------------------CSTHHHHHHHHHHTTCHHHHHHHHHHHHHT-CTTCC
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCcccc------------------ccCCccHHHHHHHcChHHHHHHHHHcCCCC-CcccC
Confidence            99999999999999999999876421                  127899999999999999999999999995 78999


Q ss_pred             CCCCH-HHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhCC
Q 047844          161 SGETP-LYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSS  220 (264)
Q Consensus       161 ~g~t~-Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~  220 (264)
                      .|+|| ||+|+..++.+++++|+++|++++..+.       .|+..++.+++++|+.++..
T Consensus       193 ~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~~g~~  246 (285)
T 3kea_A          193 LLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDAEIAKMIIEKHVE  246 (285)
T ss_dssp             CBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHHHHHHHcCCC
Confidence            99998 9999999999999999999999999883       56789999999999998864

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=2.5e-31  Score=197.92  Aligned_cols=158  Identities=18%  Similarity=0.144  Sum_probs=146.3

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChH
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAP   81 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~   81 (264)
                      .||||+|+..|+.+++++|++.+...+..|..|.||||+|+  ..|+        .+++++|++.+.+ ++..+..|.||
T Consensus         4 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~--~~~~--------~~~v~~Ll~~g~~-~~~~~~~g~t~   72 (167)
T 3v31_A            4 SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAA--AHGQ--------IAVVEFLLQNGAD-PQLLGKGRESA   72 (167)
T ss_dssp             CCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHH--HTTC--------HHHHHHHHHTTCC-TTCCCTTCCCH
T ss_pred             cchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHH--HCCC--------HHHHHHHHHcCCC-CCCcCCCCCcH
Confidence            58999999999999999999955555568999999999999  9999        9999999999988 78889999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCC
Q 047844           82 LHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGS  161 (264)
Q Consensus        82 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~  161 (264)
                      ||+|+..|+.+++++|++.|++++.                 ++..|.||||+|+..|+.+++++|++.|+++ +..|..
T Consensus        73 L~~A~~~~~~~~v~~Ll~~g~~~~~-----------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~  134 (167)
T 3v31_A           73 LSLACSKGYTDIVKMLLDCGVDVNE-----------------YDWNGGTPLLYAVHGNHVKCVKMLLESGADP-TIETDS  134 (167)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCTTC-----------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCc-----------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCC
Confidence            9999999999999999999988544                 8899999999999999999999999999996 788999


Q ss_pred             CCCHHHHHHHhChHHHHHHHHhhCCCC
Q 047844          162 GETPLYLAAARAHKEISAEILQKCPSP  188 (264)
Q Consensus       162 g~t~Lh~A~~~~~~~~~~~Ll~~ga~~  188 (264)
                      |.||||+|+..|+.+++++|+++++++
T Consensus       135 g~t~l~~A~~~~~~~~~~~L~~~~~~~  161 (167)
T 3v31_A          135 GYNSMDLAVALGYRSVQQVIESHLLKL  161 (167)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            999999999999999999999987554

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.97  E-value=1e-30  Score=204.70  Aligned_cols=165  Identities=21%  Similarity=0.229  Sum_probs=148.2

Q ss_pred             CCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHh-CCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhh
Q 047844           33 KKNTVLHVNIIASYTQNKEGESVSTKFVERIIEM-CPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIES  111 (264)
Q Consensus        33 ~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~-~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~  111 (264)
                      .|.||||.|+  ..|+        .+++++|++. +.+ ++..|..|+||||+|+..|+.+++++|++.|++....    
T Consensus         2 ~g~t~L~~A~--~~g~--------~~~v~~Ll~~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~----   66 (232)
T 2rfa_A            2 IWESPLLLAA--KEND--------VQALSKLLKFEGCE-VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFE----   66 (232)
T ss_dssp             CTTCHHHHHH--HTTC--------HHHHHHHHTTTCSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGC----
T ss_pred             CCCCHHHHHH--HcCC--------HHHHHHHHHhcCCC-cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccc----
Confidence            5899999999  9999        9999999998 666 8899999999999999999999999999999875321    


Q ss_pred             chhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCC-------------CCCCHHHHHHHhChHHHH
Q 047844          112 GVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANG-------------SGETPLYLAAARAHKEIS  178 (264)
Q Consensus       112 ~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~-------------~g~t~Lh~A~~~~~~~~~  178 (264)
                              ..+..+..|.||||+|+..|+.+++++|++.|+++ +..+.             .|+||||+|+..|+.+++
T Consensus        67 --------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v  137 (232)
T 2rfa_A           67 --------PMTSELYEGQTALHIAVINQNVNLVRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIV  137 (232)
T ss_dssp             --------CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHH
T ss_pred             --------cccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHH
Confidence                    02346788999999999999999999999999986 45544             799999999999999999


Q ss_pred             HHHHhhCCCCCcCCCCCccHHhHHHhcCChHHH----HHHHhhhCCC
Q 047844          179 AEILQKCPSPAHEGPNGKTALHAAVCSRSCAAS----RCHKLHRSSR  221 (264)
Q Consensus       179 ~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~----~~l~~~~~~~  221 (264)
                      ++|+++|++++.+|..|.||||+|+..++.+++    ++|+.+++..
T Consensus       138 ~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~  184 (232)
T 2rfa_A          138 RLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD  184 (232)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence            999999999999999999999999999999988    8888887643

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=4.9e-31  Score=196.83  Aligned_cols=155  Identities=22%  Similarity=0.294  Sum_probs=142.8

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChH
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAP   81 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~   81 (264)
                      .++|++||..|+.+++++|++.+...+..+..|.||||.|+  ..|+        .+++++|++.+.+ ++..|..|.||
T Consensus        15 ~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~--------~~~v~~Ll~~g~~-~~~~~~~g~t~   83 (169)
T 2y1l_E           15 GKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAA--FNGH--------LEIVEVLLKNGAD-VNAVDHAGMTP   83 (169)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--HTTC--------HHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred             cchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH--HcCC--------HHHHHHHHHcCCC-CCccCCCCCCH
Confidence            36899999999999999999954444558899999999999  9999        9999999999988 78899999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCC
Q 047844           82 LHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGS  161 (264)
Q Consensus        82 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~  161 (264)
                      ||+|+..|+.+++++|+++|++++.                 ++..|.||||+|+..|+.+++++|+++|+++ +.+|..
T Consensus        84 L~~A~~~~~~~~~~~Ll~~g~~~~~-----------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~  145 (169)
T 2y1l_E           84 LRLAALFGHLEIVEVLLKNGADVNA-----------------NDMEGHTPLHLAAMFGHLEIVEVLLKNGADV-NAQDKF  145 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTC-----------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCC-----------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCC
Confidence            9999999999999999999988544                 8899999999999999999999999999995 788999


Q ss_pred             CCCHHHHHHHhChHHHHHHHHhhC
Q 047844          162 GETPLYLAAARAHKEISAEILQKC  185 (264)
Q Consensus       162 g~t~Lh~A~~~~~~~~~~~Ll~~g  185 (264)
                      |.||||+|+..++.+++++|+++|
T Consensus       146 g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          146 GKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcC
Confidence            999999999999999999999876

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.97  E-value=1e-30  Score=216.03  Aligned_cols=188  Identities=16%  Similarity=0.162  Sum_probs=162.8

Q ss_pred             CcHHHHHHHcCCchHHhhhhhh---ccc-------ccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHh-CCcc
Q 047844            2 NSDLYEAAAKGEIEPFNQLAID---RQL-------GSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEM-CPSL   70 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~---~~~-------~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~-~~~~   70 (264)
                      .||||+|+..|+.+++++|++.   .+.       ....+..|.||||+|+  ..|+        .+++++|++. +.+ 
T Consensus       126 ~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~--~~g~--------~~~v~~LL~~~gad-  194 (337)
T 4g8k_A          126 FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA--EKGH--------VEVLKILLDEMGAD-  194 (337)
T ss_dssp             CBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHH--HHTC--------HHHHHHHHHHSCCC-
T ss_pred             CCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHH--HCCC--------HHHHHHHHhccCCC-
Confidence            4899999999999999999982   222       1124567999999999  9999        9999999976 566 


Q ss_pred             ceecCCCCChHHHHHHHhCC----HHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHH
Q 047844           71 LLQVNAKGDAPLHVAARYGH----AAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKI  146 (264)
Q Consensus        71 ~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~  146 (264)
                      ++..|..|.|+++.++..+.    ..++++|+++|++++.                 ++..|.||||+|+..|+.+++++
T Consensus       195 ~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~-----------------~d~~g~t~L~~a~~~~~~~~v~~  257 (337)
T 4g8k_A          195 VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV-----------------RGERGKTPLILAVEKKHLGLVQR  257 (337)
T ss_dssp             TTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTC-----------------CCGGGCCHHHHHHHTTCHHHHHH
T ss_pred             cCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCC-----------------cCCCCCCHHHHHHHhhhhHHHHH
Confidence            88999999999999887654    4688999999988544                 88999999999999999999999


Q ss_pred             HhcC-CCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhCCCCC
Q 047844          147 LLGA-DPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSSRFL  223 (264)
Q Consensus       147 Ll~~-g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~~~  223 (264)
                      |++. |+++ +.+|..|+||||+|+..|+.+++++|+++|++++.+     +||++|+.+++.+++++|+.+|+...+
T Consensus       258 Ll~~~~~~v-n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA~~d~  329 (337)
T 4g8k_A          258 LLEQEHIEI-NDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG-----DLVMTARRNYDHSLVKVLLSHGAKEDF  329 (337)
T ss_dssp             HHTSTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC-----CHHHHHHHTTCHHHHHHHHHTTCCC--
T ss_pred             HHHhcCCcc-cCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-----CHHHHHHHcCCHHHHHHHHHCcCCCCC
Confidence            9985 6775 789999999999999999999999999999998764     599999999999999999999976543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.97  E-value=6.3e-32  Score=225.52  Aligned_cols=194  Identities=15%  Similarity=0.132  Sum_probs=164.1

Q ss_pred             CcHHHHHHHcCCchHHhhhhhh----cccccc-----------------cCCCCCchhHHHHHHhhh--cCcCCCcccHH
Q 047844            2 NSDLYEAAAKGEIEPFNQLAID----RQLGSL-----------------VTHKKNTVLHVNIIASYT--QNKEGESVSTK   58 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~----~~~~~~-----------------~~~~g~t~L~~A~~~~~g--~~~~~~~~~~~   58 (264)
                      .||||+|+..|+.+++++|++.    ....+.                 .+..|.||||+|+  ..|  +        .+
T Consensus        85 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~--~~g~~~--------~~  154 (364)
T 3ljn_A           85 QKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCV--GLGPEY--------LE  154 (364)
T ss_dssp             BCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHH--HSCGGG--------HH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHH--HcCCch--------HH
Confidence            3677777777777777777773    222222                 5778999999999  999  9        99


Q ss_pred             HHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhc
Q 047844           59 FVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQS  138 (264)
Q Consensus        59 ~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~  138 (264)
                      ++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.|++...            ..++..+..|.||||+|+..
T Consensus       155 ~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------------~~~~~~~~~g~t~L~~A~~~  221 (364)
T 3ljn_A          155 MIKILVQLGAS-PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSS------------LRLDYANKQGNSHLHWAILI  221 (364)
T ss_dssp             HHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSS------------CCTTCCCTTCCCTTHHHHTT
T ss_pred             HHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHhccccccc------------ccccccCCCCCcHHHHHHHc
Confidence            99999999998 789999999999999999999999999999987211            11344889999999999999


Q ss_pred             CCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCc------------CCCCCccHHhHHHhcC
Q 047844          139 GSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAH------------EGPNGKTALHAAVCSR  206 (264)
Q Consensus       139 ~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~------------~~~~g~tpl~~A~~~~  206 (264)
                      |+.+++++|++.|+++ +..|..|+||||+|+..|+.+++++|+++|++++.            .+..+++|++.|+..+
T Consensus       222 g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~  300 (364)
T 3ljn_A          222 NWEDVAMRFVEMGIDV-NMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADP  300 (364)
T ss_dssp             TCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCH
T ss_pred             CCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhcc
Confidence            9999999999999996 78999999999999999999999999999876432            4557889999999999


Q ss_pred             ChHHHHHHHhhhC
Q 047844          207 SCAASRCHKLHRS  219 (264)
Q Consensus       207 ~~~~~~~l~~~~~  219 (264)
                      +.+.+..|+..+.
T Consensus       301 ~~~~v~~ll~~~~  313 (364)
T 3ljn_A          301 SKQEVLQLLQEKL  313 (364)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            8888877766654

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=1.1e-31  Score=210.87  Aligned_cols=177  Identities=21%  Similarity=0.198  Sum_probs=156.6

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCc-----cceecCC
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPS-----LLLQVNA   76 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~-----~~~~~~~   76 (264)
                      .||||+|+..|+.+++++|++.+...+..+..|.||||+|+  ..|+        .+++++|++.+.+     .++..+.
T Consensus        46 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~--------~~~v~~Ll~~~~~~~~~~~~~~~~~  115 (236)
T 1ikn_D           46 QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC--EQGC--------LASVGVLTQSCTTPHLHSILKATNY  115 (236)
T ss_dssp             CCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH--HHTC--------HHHHHHHHHSTTTTSSSCGGGCCCT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH--HcCC--------HHHHHHHHhcccchhHHHHhhccCC
Confidence            48999999999999999999944444458999999999999  9999        9999999998853     3577888


Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCC-CCCChhhHHHhcCCHHHHHHHhcCCCCCC
Q 047844           77 KGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKND-EEDTALHEAVQSGSLDVVKILLGADPAFP  155 (264)
Q Consensus        77 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~  155 (264)
                      .|.||||+|+..|+.+++++|++.|++++.                 ++. .|.||||+|+..|+.+++++|++.|+++ 
T Consensus       116 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-----------------~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-  177 (236)
T 1ikn_D          116 NGHTCLHLASIHGYLGIVELLVSLGADVNA-----------------QEPCNGRTALHLAVDLQNPDLVSLLLKCGADV-  177 (236)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHHTCCTTC-----------------CCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCS-
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-----------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-
Confidence            999999999999999999999999988654                 776 8999999999999999999999999996 


Q ss_pred             CCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCC--cCCCCCccHHhHHHhcC
Q 047844          156 YSANGSGETPLYLAAARAHKEISAEILQKCPSPA--HEGPNGKTALHAAVCSR  206 (264)
Q Consensus       156 ~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~--~~~~~g~tpl~~A~~~~  206 (264)
                      +..|..|+||||+|+..++.+++++|+++|++..  ..+..|.+|.+.+....
T Consensus       178 ~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~  230 (236)
T 1ikn_D          178 NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFT  230 (236)
T ss_dssp             CCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC----
T ss_pred             CcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhcccc
Confidence            7899999999999999999999999999999766  67888888887765443

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=5.2e-31  Score=200.67  Aligned_cols=155  Identities=18%  Similarity=0.159  Sum_probs=144.1

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChH
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAP   81 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~   81 (264)
                      .||||+|+..|+.+++++|++.+...+..+..|.||||+|+  ..|+        .+++++|++.+.+ ++..|..|.||
T Consensus        36 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~--~~~~--------~~~v~~Ll~~g~~-~~~~~~~g~t~  104 (192)
T 2rfm_A           36 RTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAV--KNNR--------LGIAEKLLSKGSN-VNTKDFSGKTP  104 (192)
T ss_dssp             CCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHH--HTTC--------HHHHHHHHHHTCC-TTCCCTTSCCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHH--HcCC--------HHHHHHHHHCCCC-CCCCCCCCCcH
Confidence            58999999999999999999954444558899999999999  9999        9999999999988 78899999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCC
Q 047844           82 LHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGS  161 (264)
Q Consensus        82 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~  161 (264)
                      ||+|+..|+.+++++|++.|++++.                 ++..|.||||+|+..|+.+++++|++.|+++ +.+|..
T Consensus       105 L~~A~~~~~~~~v~~Ll~~g~~~~~-----------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~  166 (192)
T 2rfm_A          105 LMWSIIFGYSEMSYFLLEHGANVND-----------------RNLEGETPLIVASKYGRSEIVKKLLELGADI-SARDLT  166 (192)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSSC-----------------CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTT
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCC-----------------CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCC
Confidence            9999999999999999999988554                 8999999999999999999999999999996 788999


Q ss_pred             CCCHHHHHHHhChHHHHHHHHhhC
Q 047844          162 GETPLYLAAARAHKEISAEILQKC  185 (264)
Q Consensus       162 g~t~Lh~A~~~~~~~~~~~Ll~~g  185 (264)
                      |.||+|+|+..|+.+++++|+++|
T Consensus       167 g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          167 GLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             SCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHhCcHHHHHHHHhcc
Confidence            999999999999999999999875

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=4.3e-31  Score=198.92  Aligned_cols=165  Identities=19%  Similarity=0.176  Sum_probs=151.8

Q ss_pred             CcHHHHHHHcCCchHHhhhhhh-cccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCCh
Q 047844            2 NSDLYEAAAKGEIEPFNQLAID-RQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDA   80 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~-~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t   80 (264)
                      .++||.||..|+.+++++|++. +...+..+..|.||||+|+  ..|+        .+++++|++.+.+ ++..+..|+|
T Consensus         6 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~--~~~~--------~~~v~~Ll~~g~~-~~~~~~~g~t   74 (179)
T 3f6q_A            6 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWAC--REGR--------SAVVEMLIMRGAR-INVMNRGDDT   74 (179)
T ss_dssp             -CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHH--HTTC--------HHHHHHHHHTTCC-TTCCCTTCCC
T ss_pred             HHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHH--HcCc--------HHHHHHHHHcCCC-CCCcCCCCCC
Confidence            4789999999999999999983 4445558999999999999  9999        9999999999988 7889999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCC
Q 047844           81 PLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANG  160 (264)
Q Consensus        81 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  160 (264)
                      |||+|+..|+.+++++|++.|++++.                 ++..|.||||+|+..|+.+++++|++.|+++ +..|.
T Consensus        75 ~L~~A~~~~~~~~v~~Ll~~g~~~~~-----------------~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~  136 (179)
T 3f6q_A           75 PLHLAASHGHRDIVQKLLQYKADINA-----------------VNEHGNVPLHYACFWGQDQVAEDLVANGALV-SICNK  136 (179)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTC-----------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-SBCCT
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCc-----------------cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-chhcc
Confidence            99999999999999999999988544                 8999999999999999999999999999995 78999


Q ss_pred             CCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCC
Q 047844          161 SGETPLYLAAARAHKEISAEILQKCPSPAHEGPNG  195 (264)
Q Consensus       161 ~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g  195 (264)
                      .|.||+|+|+..++.+++++|+++|++++..+..+
T Consensus       137 ~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~~~~~~  171 (179)
T 3f6q_A          137 YGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKD  171 (179)
T ss_dssp             TSCCGGGGSCHHHHHHHHHHHHHTTCCCSCBCCCC
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHhhcCcccCCccc
Confidence            99999999999999999999999999998876544

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=9e-31  Score=192.68  Aligned_cols=154  Identities=18%  Similarity=0.253  Sum_probs=143.7

Q ss_pred             CCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhch
Q 047844           34 KNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGV  113 (264)
Q Consensus        34 g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~  113 (264)
                      +.||||.|+  ..|+        .+++++|++.....++..+..|.||||+ +..|+.+++++|++.|++++.       
T Consensus         2 ~~~~L~~A~--~~g~--------~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~-------   63 (156)
T 1bd8_A            2 AGDRLSGAA--ARGD--------VQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNV-------   63 (156)
T ss_dssp             HHHHHHHHH--HHTC--------HHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTC-------
T ss_pred             cchHHHHHH--HhCC--------HHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCC-------
Confidence            468999999  9999        9999999999443478899999999999 999999999999999988544       


Q ss_pred             hhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCC
Q 047844          114 ESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGP  193 (264)
Q Consensus       114 ~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~  193 (264)
                                ++..|.||||+|+..|+.+++++|++.|+++ +..|..|+||||+|+..|+.+++++|++. ++++.+|.
T Consensus        64 ----------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~  131 (156)
T 1bd8_A           64 ----------QDTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDA  131 (156)
T ss_dssp             ----------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCT
T ss_pred             ----------cCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCC
Confidence                      8899999999999999999999999999995 78899999999999999999999999999 99999999


Q ss_pred             CCccHHhHHHhcCChHHHHHHHhh
Q 047844          194 NGKTALHAAVCSRSCAASRCHKLH  217 (264)
Q Consensus       194 ~g~tpl~~A~~~~~~~~~~~l~~~  217 (264)
                      .|.||+++|+..++.+++++|+.+
T Consensus       132 ~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          132 RGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhh
Confidence            999999999999999999999764

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=2.7e-31  Score=218.59  Aligned_cols=179  Identities=17%  Similarity=0.122  Sum_probs=132.0

Q ss_pred             HHHHHHcCCchHHhhhhhhcccccc-cCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHH
Q 047844            5 LYEAAAKGEIEPFNQLAIDRQLGSL-VTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLH   83 (264)
Q Consensus         5 l~~A~~~g~~~~~~~l~~~~~~~~~-~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~   83 (264)
                      +|.|+..+..++++.|++.+-..+. .|..|.||||+|+  ..|+        .+++++|++.+++ ++.+|..|+||||
T Consensus       101 ~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa--~~g~--------~~~v~~Ll~~Gad-~n~~d~~g~TpLh  169 (327)
T 1sw6_A          101 QHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLT--SIAN--------LELVKHLVKHGSN-RLYGDNMGESCLV  169 (327)
T ss_dssp             ---CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHH--HTTC--------HHHHHHHHHTTCC-TTBCCTTCCCHHH
T ss_pred             hHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHH--HcCC--------HHHHHHHHHcCCC-CCCcCCCCCCHHH
Confidence            4666777777888888884444444 6999999999999  9999        9999999999999 7899999999999


Q ss_pred             HHHHhCC---HHHHHHHHHHh-hhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHh----cCCHHHHHHHhcC-----
Q 047844           84 VAARYGH---AAVVEALIEIA-KQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQ----SGSLDVVKILLGA-----  150 (264)
Q Consensus        84 ~A~~~g~---~~~v~~Ll~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~----~~~~~~~~~Ll~~-----  150 (264)
                      +|+..|+   .++++.|++.+ ++                 ++.++..|.||||+|+.    .|+.+++++|++.     
T Consensus       170 ~A~~~g~~~~~~~~~~ll~~~~~~-----------------~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~  232 (327)
T 1sw6_A          170 KAVKSVNNYDSGTFEALLDYLYPC-----------------LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWI  232 (327)
T ss_dssp             HHHHSSHHHHTTCHHHHHHHHGGG-----------------GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhcccccHHHHHHHHHhhhcc-----------------ccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHH
Confidence            9999998   78888888887 43                 34589999999999999    8999999999976     


Q ss_pred             ---------------CCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHH
Q 047844          151 ---------------DPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHK  215 (264)
Q Consensus       151 ---------------g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~  215 (264)
                                     |+++ +..+..|+||||.|+.      +++|+++  +++.+|..|+||||+|+..|+.+++++|+
T Consensus       233 ~~~~~~~i~~~~~~~g~~~-~~~~~~g~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll  303 (327)
T 1sw6_A          233 VKKQNRPIQSGTNEKESKP-NDKNGERKDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALL  303 (327)
T ss_dssp             HHGGGCCEEEC-----------------CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHH
T ss_pred             hcccchHHHhhhhcccCCc-ccccccCCChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence                           5553 4566666777766654      5666666  46666666677777777777777776666


Q ss_pred             hhhCC
Q 047844          216 LHRSS  220 (264)
Q Consensus       216 ~~~~~  220 (264)
                      .+++.
T Consensus       304 ~~Gad  308 (327)
T 1sw6_A          304 DYGAD  308 (327)
T ss_dssp             HTTCC
T ss_pred             HcCCC
Confidence            66654

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=4.3e-30  Score=188.54  Aligned_cols=150  Identities=21%  Similarity=0.249  Sum_probs=138.1

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChH
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAP   81 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~   81 (264)
                      .++||.|+..|+.+++++|++.+.... .+..|.||||.|+  ..|+        .+++++|++.+.+ ++..+..|+||
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~--~~~~--------~~~v~~Ll~~g~~-~~~~~~~g~t~   70 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAA--QYGH--------FSTTEVLLRAGVS-RDARTKVDRTP   70 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHH--HHTC--------HHHHHHHHTTTCC-TTCCCTTCCCH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHH--HcCC--------HHHHHHHHHcCCC-CCCCCCCCCCH
Confidence            579999999999999999999433222 5888999999999  9999        9999999999988 78899999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCC
Q 047844           82 LHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGS  161 (264)
Q Consensus        82 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~  161 (264)
                      ||+|+..|+.+++++|+++|++++.                 ++..|.||||+|+..|+.+++++|++.|+++ +.+|..
T Consensus        71 L~~A~~~~~~~~v~~Ll~~g~~~~~-----------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~  132 (153)
T 1awc_B           71 LHMAASEGHANIVEVLLKHGADVNA-----------------KDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKF  132 (153)
T ss_dssp             HHHHHHHTCHHHHHHHHTTTCCTTC-----------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred             HHHHHHcChHHHHHHHHHcCCCCCC-----------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCC
Confidence            9999999999999999999988544                 8899999999999999999999999999996 788999


Q ss_pred             CCCHHHHHHHhChHHHHHHH
Q 047844          162 GETPLYLAAARAHKEISAEI  181 (264)
Q Consensus       162 g~t~Lh~A~~~~~~~~~~~L  181 (264)
                      |.||||+|+..|+.+++++|
T Consensus       133 g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          133 CKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             SCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHh
Confidence            99999999999999999987

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=1.3e-30  Score=193.66  Aligned_cols=155  Identities=26%  Similarity=0.361  Sum_probs=140.3

Q ss_pred             CcHHHHHHHcCCchHHhhhhh-hcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCCh
Q 047844            2 NSDLYEAAAKGEIEPFNQLAI-DRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDA   80 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~-~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t   80 (264)
                      +++||.|+..|+.++++.|++ ........+..|.||||+|+  ..|+        .+++++|++.+.+ ++..|..|+|
T Consensus         9 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~--~~~~--------~~~v~~Ll~~g~~-~~~~~~~g~t   77 (165)
T 3twr_A            9 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAA--GYNR--------VSVVEYLLQHGAD-VHAKDKGGLV   77 (165)
T ss_dssp             HHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHH--HTTC--------HHHHHHHHHTTCC-TTCCCTTSCC
T ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHH--HcCh--------HHHHHHHHhcCCC-CCccCCCCCC
Confidence            479999999999999999998 33333446788999999999  9999        9999999999998 7889999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCC
Q 047844           81 PLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANG  160 (264)
Q Consensus        81 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  160 (264)
                      |||+|+..|+.+++++|++.|++++.                 ++..|.||||+|+..|+.+++++|++.|+++ +.+|.
T Consensus        78 ~L~~A~~~~~~~~v~~Ll~~g~~~~~-----------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~  139 (165)
T 3twr_A           78 PLHNACSYGHYEVAELLVKHGAVVNV-----------------ADLWKFTPLHEAAAKGKYEICKLLLQHGADP-TKKNR  139 (165)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTC-----------------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT
T ss_pred             HHHHHHHcCcHHHHHHHHhCCCCCCC-----------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-cccCC
Confidence            99999999999999999999988544                 8899999999999999999999999999995 78999


Q ss_pred             CCCCHHHHHHHhChHHHHHHHHhhCC
Q 047844          161 SGETPLYLAAARAHKEISAEILQKCP  186 (264)
Q Consensus       161 ~g~t~Lh~A~~~~~~~~~~~Ll~~ga  186 (264)
                      .|.||+|+|+. ++.+++++|++.|+
T Consensus       140 ~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          140 DGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             TSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             CCCChhHhHhc-CChHHHHHHhhccc
Confidence            99999999877 88999999998875

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=2.1e-29  Score=192.89  Aligned_cols=163  Identities=21%  Similarity=0.216  Sum_probs=150.0

Q ss_pred             CCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhh
Q 047844           31 THKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIE  110 (264)
Q Consensus        31 ~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~  110 (264)
                      +..+.||||.|+  ..|+        .+.++.|++.+...++..|..|.||||+|+..|+.+++++|++.|++++.    
T Consensus         2 ~~~~~~~L~~A~--~~g~--------~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~----   67 (201)
T 3hra_A            2 KTYEVGALLEAA--NQRD--------TKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL----   67 (201)
T ss_dssp             -CCCTTHHHHHH--HTTC--------HHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC----
T ss_pred             CcccccHHHHHH--Hhcc--------HHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC----
Confidence            457899999999  9999        99999999999855889999999999999999999999999999988554    


Q ss_pred             hchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhc-CCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhC-CCC
Q 047844          111 SGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLG-ADPAFPYSANGSGETPLYLAAARAHKEISAEILQKC-PSP  188 (264)
Q Consensus       111 ~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g-a~~  188 (264)
                                   ++..|.||||+|+..|+.+++++|++ .+.+ .+..+..|.||||+|+..++.+++++|++.| +++
T Consensus        68 -------------~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  133 (201)
T 3hra_A           68 -------------QNSISDSPYLYAGAQGRTEILAYMLKHATPD-LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDI  133 (201)
T ss_dssp             -------------CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC-TTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCT
T ss_pred             -------------CCCCCCCHHHHHHHcCCHHHHHHHHhccCcc-cccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc
Confidence                         88999999999999999999999995 4555 4788999999999999999999999999999 999


Q ss_pred             CcCCCCCccHHhHHHhcCC-----hHHHHHHHhhhCCC
Q 047844          189 AHEGPNGKTALHAAVCSRS-----CAASRCHKLHRSSR  221 (264)
Q Consensus       189 ~~~~~~g~tpl~~A~~~~~-----~~~~~~l~~~~~~~  221 (264)
                      +.++..|.||||+|+..++     .+++++|+.+++..
T Consensus       134 ~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~  171 (201)
T 3hra_A          134 DFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQ  171 (201)
T ss_dssp             TCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCT
T ss_pred             CCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCC
Confidence            9999999999999999998     99999999987653

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=9.2e-30  Score=187.27  Aligned_cols=152  Identities=23%  Similarity=0.306  Sum_probs=139.4

Q ss_pred             CcHHHHHHHcCCchHHhhhhhh-cccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCCh
Q 047844            2 NSDLYEAAAKGEIEPFNQLAID-RQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDA   80 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~-~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t   80 (264)
                      .+|||.|+..|+.+++++|++. ....+..+..|.||||+ +  ..|+        .+++++|++.+.+ ++..|..|.|
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~--~~~~--------~~~v~~Ll~~g~~-~~~~~~~g~t   70 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-M--MFGS--------TAIALELLKQGAS-PNVQDTSGTS   70 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-S--CTTC--------HHHHHHHHHTTCC-TTCCCTTSCC
T ss_pred             chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-H--HcCC--------HHHHHHHHHCCCC-CCCcCCCCCC
Confidence            4799999999999999999984 22445578999999999 9  9999        9999999999998 7889999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCC
Q 047844           81 PLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANG  160 (264)
Q Consensus        81 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  160 (264)
                      |||+|+..|+.+++++|++.|++++.                 ++..|.||||+|+..|+.+++++|++. +++ +..|.
T Consensus        71 ~L~~A~~~~~~~~v~~Ll~~g~~~~~-----------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~-~~~~~  131 (156)
T 1bd8_A           71 PVHDAARTGFLDTLKVLVEHGADVNV-----------------PDGTGALPIHLAVQEGHTAVVSFLAAE-SDL-HRRDA  131 (156)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCSCC-----------------CCTTSCCHHHHHHHHTCHHHHHHHHTT-SCT-TCCCT
T ss_pred             HHHHHHHcCcHHHHHHHHHcCCCCCC-----------------cCCCCCcHHHHHHHhChHHHHHHHHhc-cCC-CCcCC
Confidence            99999999999999999999988554                 889999999999999999999999999 774 78899


Q ss_pred             CCCCHHHHHHHhChHHHHHHHHhh
Q 047844          161 SGETPLYLAAARAHKEISAEILQK  184 (264)
Q Consensus       161 ~g~t~Lh~A~~~~~~~~~~~Ll~~  184 (264)
                      .|.||||+|+..|+.+++++|+++
T Consensus       132 ~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          132 RGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhh
Confidence            999999999999999999999875

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.97  E-value=4.5e-33  Score=217.90  Aligned_cols=182  Identities=18%  Similarity=0.137  Sum_probs=114.2

Q ss_pred             cHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHH
Q 047844            3 SDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPL   82 (264)
Q Consensus         3 ~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L   82 (264)
                      ||||+|+..|+.+++++|++.+...+..|..|.||||+|+  ..|+        .+++++|++.+.+ ++..|..|+|||
T Consensus        23 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~--~~g~--------~~~v~~Ll~~ga~-~n~~d~~g~tpL   91 (229)
T 2vge_A           23 VLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAI--CGAN--------YSIVDFLITAGAN-VNSPDSHGWTPL   91 (229)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHH--HTTC--------HHHHHHHHHTTCC-TTCCCTTCCCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHH--HcCC--------HHHHHHHHHCCCC-CCCCCCCCCCHH
Confidence            4566666666666666666632223335666666666666  6666        6666666666665 556666666666


Q ss_pred             HHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCC-CCCCChhhHH--HhcCCHHHHHHHhcCCCCCCCCCC
Q 047844           83 HVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKN-DEEDTALHEA--VQSGSLDVVKILLGADPAFPYSAN  159 (264)
Q Consensus        83 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~t~L~~A--~~~~~~~~~~~Ll~~g~~~~~~~~  159 (264)
                      |+|+..|+.+++++|++.|++++.                 ++ ..|.||||+|  +..|+.+++++|++.|+++ +..|
T Consensus        92 h~A~~~g~~~~v~~Ll~~ga~~~~-----------------~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~-~~~~  153 (229)
T 2vge_A           92 HCAASCNDTVICMALVQHGAAIFA-----------------TTLSDGATAFEKCDPYREGYADCATYLADVEQSM-GLMN  153 (229)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCTTC-----------------CCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHT-TTSG
T ss_pred             HHHHHcCCHHHHHHHHHcCCCccc-----------------ccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCc-cccc
Confidence            666666666666666666655433                 33 4666666666  6666666666666666664 4555


Q ss_pred             CCCCCHHHHHHHhChHHHHHHHHhhCCC--CCcCCCCCccHHhHHHhcCChHHHHHHHh
Q 047844          160 GSGETPLYLAAARAHKEISAEILQKCPS--PAHEGPNGKTALHAAVCSRSCAASRCHKL  216 (264)
Q Consensus       160 ~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~--~~~~~~~g~tpl~~A~~~~~~~~~~~l~~  216 (264)
                      ..|.||++.++..+.   .++|++.|++  ++.+|..|+||||+|+..|+.++++....
T Consensus       154 ~~~~~~l~~~~~~~~---~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~l  209 (229)
T 2vge_A          154 SGAVYALWDYSAEFG---DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYF  209 (229)
T ss_dssp             GGEEEESSCBCCSST---TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGGE
T ss_pred             CCchHHHHHHhhccc---cccCccccccccccccCCCcccHHHHHHHcCCcceeehhhh
Confidence            566666654433322   2445556666  55677888889998888888888866443

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=1.4e-29  Score=201.31  Aligned_cols=171  Identities=22%  Similarity=0.175  Sum_probs=146.2

Q ss_pred             CCCchhHHHHHHhhhcCcCCCcccHH----HHHHHHHhCCcccee----cCCCCChHHHHHHHh---CCHHHHHHHHHHh
Q 047844           33 KKNTVLHVNIIASYTQNKEGESVSTK----FVERIIEMCPSLLLQ----VNAKGDAPLHVAARY---GHAAVVEALIEIA  101 (264)
Q Consensus        33 ~g~t~L~~A~~~~~g~~~~~~~~~~~----~~~~ll~~~~~~~~~----~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~  101 (264)
                      .|.||||.|+  ..|+        .+    ++++|++.+.+ ++.    .|..|+||||+|+..   |+.+++++|++.|
T Consensus         1 ~G~t~L~~A~--~~g~--------~~~v~~ll~~l~~~g~~-i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g   69 (256)
T 2etb_A            1 FDRDRLFSVV--SRGV--------PEELTGLLEYLRWNSKY-LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQID   69 (256)
T ss_dssp             CCHHHHHHHH--HHTC--------GGGGTTHHHHHHHHTCC-TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHH
T ss_pred             CCccHHHHHH--HcCC--------HHHHHHHHHHHHHcCCC-cccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcC
Confidence            4789999999  9999        76    67788888988 666    899999999999999   9999999999999


Q ss_pred             hhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCC-------------CCCHHHH
Q 047844          102 KQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGS-------------GETPLYL  168 (264)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~-------------g~t~Lh~  168 (264)
                      ++.......      +......++..|.||||+|+..|+.+++++|++.|+++ +..+..             |+||||+
T Consensus        70 ~~~~~~~~~------~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~  142 (256)
T 2etb_A           70 KDSGNPKPL------VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSL  142 (256)
T ss_dssp             HHTTCSSCG------GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHH
T ss_pred             Ccccchhhh------cccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHH
Confidence            886532100      00001124567999999999999999999999999996 666665             9999999


Q ss_pred             HHHhChHHHHHHHHh---hCCCCCcCCCCCccHHhHHHh--cCChH-------HHHHHHhhhCCC
Q 047844          169 AAARAHKEISAEILQ---KCPSPAHEGPNGKTALHAAVC--SRSCA-------ASRCHKLHRSSR  221 (264)
Q Consensus       169 A~~~~~~~~~~~Ll~---~ga~~~~~~~~g~tpl~~A~~--~~~~~-------~~~~l~~~~~~~  221 (264)
                      |+..|+.+++++|++   .|++++.+|..|+||||+|+.  .++.+       ++++|+.+++..
T Consensus       143 A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~  207 (256)
T 2etb_A          143 AACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARL  207 (256)
T ss_dssp             HHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCc
Confidence            999999999999999   999999999999999999998  78888       999999987643

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=4.7e-30  Score=205.95  Aligned_cols=171  Identities=23%  Similarity=0.238  Sum_probs=139.2

Q ss_pred             CcHHHHHHHc---CCchHHhhhhhhc----------cc-ccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhC
Q 047844            2 NSDLYEAAAK---GEIEPFNQLAIDR----------QL-GSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMC   67 (264)
Q Consensus         2 ~~~l~~A~~~---g~~~~~~~l~~~~----------~~-~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~   67 (264)
                      .||||+|+..   |+.+++++|++.+          +. ....|..|.||||+|+  ..|+        .+++++|++.+
T Consensus        55 ~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~--~~g~--------~~~v~~Ll~~g  124 (273)
T 2pnn_A           55 KTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAI--ERRN--------MTLVTLLVENG  124 (273)
T ss_dssp             CCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHH--HTTC--------HHHHHHHHHTT
T ss_pred             CCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHH--HcCC--------HHHHHHHHHCC
Confidence            5899999987   9999999999932          11 1114568999999999  9999        99999999999


Q ss_pred             CccceecCC--------------CCChHHHHHHHhCCHHHHHHHHH---HhhhcchhhhhhchhhHHHHHhcCCCCCCCC
Q 047844           68 PSLLLQVNA--------------KGDAPLHVAARYGHAAVVEALIE---IAKQESDQEIESGVESTARHMLGMKNDEEDT  130 (264)
Q Consensus        68 ~~~~~~~~~--------------~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t  130 (264)
                      .+ ++..+.              .|.||||+|+..|+.+++++|++   .|++++.                 ++..|.|
T Consensus       125 a~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~-----------------~d~~g~t  186 (273)
T 2pnn_A          125 AD-VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISA-----------------RDSVGNT  186 (273)
T ss_dssp             CC-TTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTC-----------------CCTTSCC
T ss_pred             CC-cCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCcee-----------------eCCCCCc
Confidence            88 677776              79999999999999999999999   8887544                 8999999


Q ss_pred             hhhHHHhcCC---------HHHHHHHhcCCCCCC------CCCCCCCCCHHHHHHHhChHHHHHHHHhhCC-CCCcCCCC
Q 047844          131 ALHEAVQSGS---------LDVVKILLGADPAFP------YSANGSGETPLYLAAARAHKEISAEILQKCP-SPAHEGPN  194 (264)
Q Consensus       131 ~L~~A~~~~~---------~~~~~~Ll~~g~~~~------~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga-~~~~~~~~  194 (264)
                      |||+|+..|+         .+++++|++.|+++.      +.+|..|+||||+|+..|+.+++++|+++|+ ++......
T Consensus       187 pLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~  266 (273)
T 2pnn_A          187 VLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAA  266 (273)
T ss_dssp             HHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC--------
T ss_pred             HHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhh
Confidence            9999999988         899999999998863      2589999999999999999999999999998 78777776


Q ss_pred             CccHHh
Q 047844          195 GKTALH  200 (264)
Q Consensus       195 g~tpl~  200 (264)
                      +.+|-+
T Consensus       267 ~~~~~~  272 (273)
T 2pnn_A          267 AHHHHH  272 (273)
T ss_dssp             ------
T ss_pred             hhhccC
Confidence            666543

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=3.2e-30  Score=203.08  Aligned_cols=176  Identities=15%  Similarity=0.062  Sum_probs=101.5

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChH
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAP   81 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~   81 (264)
                      .||||.|+..|+.+.++.|++.+...+ .+..|.||||.|+  ..|+        .+++++|++.+.+ ++..|..|+||
T Consensus         6 ~t~L~~a~~~~~~~~~~~ll~~g~~~~-~~~~~~t~L~~A~--~~g~--------~~~v~~Ll~~g~~-~~~~d~~g~t~   73 (239)
T 1ycs_B            6 QVSLPPGKRTNLRKTGSERIAHGMRVK-FNPLPLALLLDSS--LEGE--------FDLVQRIIYEVDD-PSLPNDEGITA   73 (239)
T ss_dssp             --------------------------------CHHHHHHHH--HHTC--------HHHHHHHTSTTSS-CCCCCTTSCCH
T ss_pred             cccCchhhhhhhHHHHHHHhccCCCcc-cCchhhHHHHHHH--HcCC--------HHHHHHHHHcCCC-CCCcCCCCCCH
Confidence            367777777777777777777322211 2456677777777  7777        7777777777775 66777777777


Q ss_pred             HHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCC
Q 047844           82 LHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGS  161 (264)
Q Consensus        82 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~  161 (264)
                      ||+|+..|+.+++++|+++|++++.                 +|..|.||||+|+..|+.+++++|+++|+++ +..+..
T Consensus        74 L~~A~~~g~~~~v~~Ll~~ga~~~~-----------------~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~  135 (239)
T 1ycs_B           74 LHNAVCAGHTEIVKFLVQFGVNVNA-----------------ADSDGWTPLHCAASCNNVQVCKFLVESGAAV-FAMTYS  135 (239)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCTTC-----------------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSS
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCc-----------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ceecCC
Confidence            7777777777777777777766433                 6777777777777777777777777777775 455555


Q ss_pred             CC-CHHHHH--HHhChHHHHHHHHhhCCCCCcC---------CCCCccHHhHHHhcCC
Q 047844          162 GE-TPLYLA--AARAHKEISAEILQKCPSPAHE---------GPNGKTALHAAVCSRS  207 (264)
Q Consensus       162 g~-t~Lh~A--~~~~~~~~~~~Ll~~ga~~~~~---------~~~g~tpl~~A~~~~~  207 (264)
                      |. ||||+|  +..|+.+++++|+++|++++..         +..+.++.+++...|.
T Consensus       136 ~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          136 DMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             SCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             CCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence            44 777777  6667777777777777666554         4445666666666554

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=1.9e-28  Score=196.92  Aligned_cols=157  Identities=18%  Similarity=0.226  Sum_probs=141.9

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcc-cccccCCCCCchhHHHHHH---hhhcCcCCCcccHHHHHHHHHhCCccceecCCC
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQ-LGSLVTHKKNTVLHVNIIA---SYTQNKEGESVSTKFVERIIEMCPSLLLQVNAK   77 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~-~~~~~~~~g~t~L~~A~~~---~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~   77 (264)
                      +||||+|+..|+.+++++|++.+. ..+..+..|.||||.|++.   ..++        .+++++|++.+.. .+..+..
T Consensus       112 ~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~--------~~~v~~Ll~~g~~-~~~~~~~  182 (276)
T 4hbd_A          112 NTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDD--------IETVLQLFRLGNI-NAKASQA  182 (276)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHH--------HHHHHHHHHHSCT-TCCCTTT
T ss_pred             CCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhh--------HHHHHHHHHcCCC-ccccCCC
Confidence            589999999999999999999443 5556899999999999922   2367        9999999999977 6788899


Q ss_pred             CChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhc-CCCCCCC
Q 047844           78 GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLG-ADPAFPY  156 (264)
Q Consensus        78 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~  156 (264)
                      |+||||+|+..|+.+++++|++.|++++.                 +|..|.||||+|+..|+.+++++|++ .|+++ +
T Consensus       183 g~tpLh~A~~~g~~~~v~~Ll~~gad~n~-----------------~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~-~  244 (276)
T 4hbd_A          183 GQTALMLAVSHGRVDVVKALLACEADVNV-----------------QDDDGSTALMCACEHGHKEIAGLLLAVPSCDI-S  244 (276)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTC-----------------CCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCT-T
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCCCC-----------------CCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCC-c
Confidence            99999999999999999999999998554                 89999999999999999999999999 89995 7


Q ss_pred             CCCCCCCCHHHHHHHhChHHHHHHHHhhC
Q 047844          157 SANGSGETPLYLAAARAHKEISAEILQKC  185 (264)
Q Consensus       157 ~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g  185 (264)
                      .+|..|+||||+|+..|+.+++++|++++
T Consensus       245 ~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          245 LTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            89999999999999999999999999875

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=1.9e-29  Score=198.61  Aligned_cols=161  Identities=20%  Similarity=0.090  Sum_probs=118.4

Q ss_pred             CCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhh
Q 047844           31 THKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIE  110 (264)
Q Consensus        31 ~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~  110 (264)
                      +..|.||||.|+  ..|+        .+.++.|++.+.+ ++. +..|.||||.|+..|+.+++++|++.|++++.    
T Consensus         2 ~~~g~t~L~~a~--~~~~--------~~~~~~ll~~g~~-~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~----   65 (239)
T 1ycs_B            2 EITGQVSLPPGK--RTNL--------RKTGSERIAHGMR-VKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSL----   65 (239)
T ss_dssp             -----------------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCC----
T ss_pred             CccccccCchhh--hhhh--------HHHHHHHhccCCC-ccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCC----
Confidence            456899999999  9999        9999999999988 443 47789999999999999999999999987544    


Q ss_pred             hchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCc
Q 047844          111 SGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAH  190 (264)
Q Consensus       111 ~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~  190 (264)
                                   ++..|.||||+|+..|+.+++++|++.|+++ +..|..|+||||+|+..|+.+++++|+++|++++.
T Consensus        66 -------------~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~  131 (239)
T 1ycs_B           66 -------------PNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA  131 (239)
T ss_dssp             -------------CCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             -------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcce
Confidence                         8999999999999999999999999999996 78999999999999999999999999999999999


Q ss_pred             CCCCCc-cHHhHH--HhcCChHHHHHHHhhhCCC
Q 047844          191 EGPNGK-TALHAA--VCSRSCAASRCHKLHRSSR  221 (264)
Q Consensus       191 ~~~~g~-tpl~~A--~~~~~~~~~~~l~~~~~~~  221 (264)
                      ++..|. ||+|+|  +..|+.+++++|+..++..
T Consensus       132 ~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~  165 (239)
T 1ycs_B          132 MTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM  165 (239)
T ss_dssp             CCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHT
T ss_pred             ecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcc
Confidence            998887 999999  8889999999999887653

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=5e-29  Score=198.50  Aligned_cols=159  Identities=21%  Similarity=0.205  Sum_probs=139.1

Q ss_pred             CcHHHHHH---HcCCchHHhhhhhhcc-----------cccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhC
Q 047844            2 NSDLYEAA---AKGEIEPFNQLAIDRQ-----------LGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMC   67 (264)
Q Consensus         2 ~~~l~~A~---~~g~~~~~~~l~~~~~-----------~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~   67 (264)
                      .||||+|+   ..|+.+++++|++.+.           .....|..|.||||+|+  ..|+        .+++++|++.+
T Consensus        47 ~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~--~~g~--------~~~v~~Ll~~g  116 (260)
T 3jxi_A           47 KTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAI--ERRC--------KHYVELLVEKG  116 (260)
T ss_dssp             CCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHH--HTTC--------HHHHHHHHHTT
T ss_pred             CcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHH--HcCC--------HHHHHHHHhCC
Confidence            48999999   6799999999998321           12224558999999999  9999        99999999999


Q ss_pred             CccceecC--------------CCCChHHHHHHHhCCHHHHHHHHH---HhhhcchhhhhhchhhHHHHHhcCCCCCCCC
Q 047844           68 PSLLLQVN--------------AKGDAPLHVAARYGHAAVVEALIE---IAKQESDQEIESGVESTARHMLGMKNDEEDT  130 (264)
Q Consensus        68 ~~~~~~~~--------------~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t  130 (264)
                      .+ ++..+              ..|+||||+|+..|+.+++++|++   .|++++                 .+|..|.|
T Consensus       117 a~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~-----------------~~d~~g~T  178 (260)
T 3jxi_A          117 AD-VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLR-----------------RQDSRGNT  178 (260)
T ss_dssp             CC-TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTT-----------------CCCTTSCC
T ss_pred             CC-cCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCc-----------------ccCCCCCc
Confidence            88 67777              689999999999999999999999   788754                 48999999


Q ss_pred             hhhHHHhcCC---------HHHHHHHhcCCCCCC------CCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCC
Q 047844          131 ALHEAVQSGS---------LDVVKILLGADPAFP------YSANGSGETPLYLAAARAHKEISAEILQKCPSP  188 (264)
Q Consensus       131 ~L~~A~~~~~---------~~~~~~Ll~~g~~~~------~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~  188 (264)
                      |||+|+..++         .+++++|++.|+++.      +..|..|+||||+|+..|+.+++++|+++|++.
T Consensus       179 pLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  251 (260)
T 3jxi_A          179 VLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIAD  251 (260)
T ss_dssp             HHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCc
Confidence            9999999887         799999999998852      468999999999999999999999999998543

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.96  E-value=2.5e-29  Score=190.14  Aligned_cols=158  Identities=11%  Similarity=0.041  Sum_probs=129.7

Q ss_pred             cHHHHHHHcCCchHHhhhhh-hcccccccC-CCCCchhHHHHHHhhhcCcCCCcccH----HHHHHHHHhCCccceecCC
Q 047844            3 SDLYEAAAKGEIEPFNQLAI-DRQLGSLVT-HKKNTVLHVNIIASYTQNKEGESVST----KFVERIIEMCPSLLLQVNA   76 (264)
Q Consensus         3 ~~l~~A~~~g~~~~~~~l~~-~~~~~~~~~-~~g~t~L~~A~~~~~g~~~~~~~~~~----~~~~~ll~~~~~~~~~~~~   76 (264)
                      ++|+.|+..|+++.++.++. +.+.   .+ ..|+||||+|+  ..|+        .    +++++|++.|++ ++.+|.
T Consensus         8 ~~l~~Aa~~g~~~~~~~l~~~~~~~---~~~~~g~T~Lh~A~--~~~~--------~~~~~~iv~~Ll~~Gad-vn~~d~   73 (186)
T 3t8k_A            8 RTVSAAAMLGTYEDFLELFEKGYED---KESVLKSNILYDVL--RNNN--------DEARYKISMFLINKGAD-IKSRTK   73 (186)
T ss_dssp             SSHHHHHHHSCHHHHHHHHHHSSSC---HHHHHTTTHHHHHT--TCSC--------HHHHHHHHHHHHHTTCC-SSCCCT
T ss_pred             cHHHHHHHcCCHHHHHHHHhcCccc---ccccCCCCHHHHHH--HcCC--------cchHHHHHHHHHHCCCC-CCCCCC
Confidence            68999999999999999998 4433   44 77999999999  8886        5    589999999999 889999


Q ss_pred             CCChHHHHHHHhCC------HHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCC-ChhhHHHhcC-----CHHHH
Q 047844           77 KGDAPLHVAARYGH------AAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEED-TALHEAVQSG-----SLDVV  144 (264)
Q Consensus        77 ~g~t~L~~A~~~g~------~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~-t~L~~A~~~~-----~~~~~  144 (264)
                      .|+||||+|+..|+      .+++++|+++|++++.                 +|..|. ||||+|+..+     ..+++
T Consensus        74 ~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~-----------------~d~~g~ttpLh~A~~~~~~~~~~~~iv  136 (186)
T 3t8k_A           74 EGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITA-----------------LYKPYKIVVFKNIFNYFVDENEMIPLY  136 (186)
T ss_dssp             TCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSS-----------------CBGGGTBCTTGGGGGCCSCHHHHHHHH
T ss_pred             CCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCc-----------------cCCCcCchHHHHHHHcCCChhhHHHHH
Confidence            99999999999987      5789999999988554                 888888 9999998844     35678


Q ss_pred             HHHhc-CCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCC
Q 047844          145 KILLG-ADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEG  192 (264)
Q Consensus       145 ~~Ll~-~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~  192 (264)
                      ++|++ .|+++ +.+|..|.||||+|+..++.+++++|.++....+.++
T Consensus       137 ~~Ll~~~gad~-~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~~  184 (186)
T 3t8k_A          137 KLIFSQSGLQL-LIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE  184 (186)
T ss_dssp             HHHHTSTTCCT-TCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHhcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhccc
Confidence            88888 78885 6788888888888888888888888877765555443

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.96  E-value=3.2e-28  Score=174.99  Aligned_cols=130  Identities=17%  Similarity=0.122  Sum_probs=123.2

Q ss_pred             ceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcC
Q 047844           71 LLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGA  150 (264)
Q Consensus        71 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  150 (264)
                      ++..+..|.||||+|+..|+.+++++|++.|++++.                 ++..|.||||+|+. |+.+++++|++.
T Consensus         5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-----------------~~~~g~t~L~~A~~-~~~~~v~~Ll~~   66 (136)
T 1d9s_A            5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNA-----------------LNRFGRRPIQVMMM-GSAQVAELLLLH   66 (136)
T ss_dssp             CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTC-----------------CCTTCCTTTTTSTT-SCHHHHHHHHHH
T ss_pred             ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCC-----------------cCCCCCCHHHHHHc-CCHHHHHHHHHC
Confidence            678899999999999999999999999999887544                 88999999999999 999999999999


Q ss_pred             CCCCCCCCCCC-CCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhC
Q 047844          151 DPAFPYSANGS-GETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRS  219 (264)
Q Consensus       151 g~~~~~~~~~~-g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~  219 (264)
                      |+++ +..|.. |+||||+|+..++.+++++|+++|++++.+|..|.||||+|+..++.+++++|+.+++
T Consensus        67 g~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           67 GAEP-NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG  135 (136)
T ss_dssp             TCCS-SCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred             CCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            9996 788888 9999999999999999999999999999999999999999999999999999998875

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.95  E-value=1.6e-28  Score=185.80  Aligned_cols=155  Identities=12%  Similarity=-0.019  Sum_probs=138.5

Q ss_pred             CCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCH----HHHHHHHHHhhhcchhhh
Q 047844           34 KNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHA----AVVEALIEIAKQESDQEI  109 (264)
Q Consensus        34 g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~----~~v~~Ll~~~~~~~~~~~  109 (264)
                      ++++|+.|+  ..|+        .+.++.++..+.+..  .+..|+||||+|+..|+.    +++++|++.|++++.   
T Consensus         6 ~~~~l~~Aa--~~g~--------~~~~~~l~~~~~~~~--~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~---   70 (186)
T 3t8k_A            6 EYRTVSAAA--MLGT--------YEDFLELFEKGYEDK--ESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKS---   70 (186)
T ss_dssp             HCSSHHHHH--HHSC--------HHHHHHHHHHSSSCH--HHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSC---
T ss_pred             cccHHHHHH--HcCC--------HHHHHHHHhcCcccc--cccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCC---
Confidence            568999999  9999        999999999875532  237799999999999975    599999999999655   


Q ss_pred             hhchhhHHHHHhcCCCCCCCChhhHHHhcCC------HHHHHHHhcCCCCCCCCCCCCCC-CHHHHHHH-----hChHHH
Q 047844          110 ESGVESTARHMLGMKNDEEDTALHEAVQSGS------LDVVKILLGADPAFPYSANGSGE-TPLYLAAA-----RAHKEI  177 (264)
Q Consensus       110 ~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~------~~~~~~Ll~~g~~~~~~~~~~g~-t~Lh~A~~-----~~~~~~  177 (264)
                                    ++..|.||||+|+..|+      .+++++|+++|+++ +.+|..|+ ||||+|+.     .+..++
T Consensus        71 --------------~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~i  135 (186)
T 3t8k_A           71 --------------RTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPL  135 (186)
T ss_dssp             --------------CCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHH
T ss_pred             --------------CCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHH
Confidence                          89999999999999987      68899999999996 78999999 99999998     445679


Q ss_pred             HHHHHh-hCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhh
Q 047844          178 SAEILQ-KCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHR  218 (264)
Q Consensus       178 ~~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~  218 (264)
                      +++|++ +|++++.+|..|+||||+|+..++.+++++|..+.
T Consensus       136 v~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~  177 (186)
T 3t8k_A          136 YKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYI  177 (186)
T ss_dssp             HHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHH
Confidence            999999 99999999999999999999999999999998764

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.95  E-value=1.2e-28  Score=181.44  Aligned_cols=143  Identities=18%  Similarity=0.213  Sum_probs=105.2

Q ss_pred             cCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhh
Q 047844           30 VTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEI  109 (264)
Q Consensus        30 ~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~  109 (264)
                      .+..|.||||.|+  ..|+        .+++++|++.+.+ ++..+..|+||||+|+ .|+.+++++|++.|++++.   
T Consensus         8 ~~~~~~t~L~~A~--~~g~--------~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~---   72 (156)
T 1bi7_B            8 SMEPSADWLATAA--ARGR--------VEEVRALLEAGAN-PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNC---   72 (156)
T ss_dssp             --CCSTTHHHHHH--HHTC--------HHHHHHHHTTTCC-TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCC---
T ss_pred             CCccchHHHHHHH--HcCC--------HHHHHHHHHcCCC-CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCC---
Confidence            5677888888888  8888        8888888888877 7778888888888885 7888888888888877544   


Q ss_pred             hhchhhHHHHHhcCCCCCCCC-hhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCC
Q 047844          110 ESGVESTARHMLGMKNDEEDT-ALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSP  188 (264)
Q Consensus       110 ~~~~~~~~~~~l~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~  188 (264)
                                    ++..|.| |||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+..++.+++++|+++|+++
T Consensus        73 --------------~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~  137 (156)
T 1bi7_B           73 --------------ADPATLTRPVHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGT  137 (156)
T ss_dssp             --------------CCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---
T ss_pred             --------------cCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCC
Confidence                          7888888 888888888888888888888885 678888888888888888888888888888888


Q ss_pred             CcCCCCCccHHhHH
Q 047844          189 AHEGPNGKTALHAA  202 (264)
Q Consensus       189 ~~~~~~g~tpl~~A  202 (264)
                      +.++..|.||.+.+
T Consensus       138 ~~~~~~g~t~~~~~  151 (156)
T 1bi7_B          138 RGSNHARIDAAEGP  151 (156)
T ss_dssp             --------------
T ss_pred             CccCcCcCcccccC
Confidence            88888888877643

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=6.5e-29  Score=194.25  Aligned_cols=161  Identities=14%  Similarity=0.069  Sum_probs=139.7

Q ss_pred             hhhhh---hcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHH
Q 047844           18 NQLAI---DRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVV   94 (264)
Q Consensus        18 ~~l~~---~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v   94 (264)
                      +.|++   +++.....+..+.||||.|+  ..|+        .+++++|++.+.+ ++..|..|+||||+|+..|+.+++
T Consensus         2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~--~~g~--------~~~v~~Ll~~g~~-~~~~d~~g~tpLh~A~~~g~~~~v   70 (229)
T 2vge_A            2 RSVLRKAGSPRKARRARLNPLVLLLDAA--LTGE--------LEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSIV   70 (229)
T ss_dssp             --------CCCCCCCTTSCHHHHHHHHH--HHTC--------HHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             eehhccCCCCccccccccchhHHHHHHH--HcCC--------HHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHH
Confidence            45555   34444446677889999999  9999        9999999999998 788999999999999999999999


Q ss_pred             HHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCC-CCCCCCHHHHH--HH
Q 047844           95 EALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSA-NGSGETPLYLA--AA  171 (264)
Q Consensus        95 ~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~-~~~g~t~Lh~A--~~  171 (264)
                      ++|++.|++++.                 ++..|.||||+|+..|+.+++++|++.|+++ +.. +..|+||||+|  +.
T Consensus        71 ~~Ll~~ga~~n~-----------------~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~a~~  132 (229)
T 2vge_A           71 DFLITAGANVNS-----------------PDSHGWTPLHCAASCNDTVICMALVQHGAAI-FATTLSDGATAFEKCDPYR  132 (229)
T ss_dssp             HHHHHTTCCTTC-----------------CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCSSTTCCTGGGCCTTS
T ss_pred             HHHHHCCCCCCC-----------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ccccCCCCCCHHHHHHHHh
Confidence            999999988544                 8899999999999999999999999999997 455 47999999999  99


Q ss_pred             hChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCC
Q 047844          172 RAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRS  207 (264)
Q Consensus       172 ~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~  207 (264)
                      .++.+++++|++.|++++.++..|.+|++.++..+.
T Consensus       133 ~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~  168 (229)
T 2vge_A          133 EGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFG  168 (229)
T ss_dssp             TTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSST
T ss_pred             cChHHHHHHHHHcCCCcccccCCchHHHHHHhhccc
Confidence            999999999999999999999999999996655543

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=7.9e-28  Score=172.94  Aligned_cols=129  Identities=20%  Similarity=0.281  Sum_probs=121.7

Q ss_pred             ccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhh
Q 047844           29 LVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQE  108 (264)
Q Consensus        29 ~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~  108 (264)
                      ..+..|.||||.|+  ..|+        .+++++|++.+.+ ++..+..|+||||+|+. |+.+++++|++.|++++.  
T Consensus         7 ~~~~~g~t~L~~A~--~~~~--------~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~--   72 (136)
T 1d9s_A            7 MLGGSSDAGLATAA--ARGQ--------VETVRQLLEAGAD-PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNC--   72 (136)
T ss_dssp             CCCCCCSCHHHHHH--HTTC--------HHHHHHHHHTTCC-TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSC--
T ss_pred             CCCCCCccHHHHHH--HcCC--------HHHHHHHHHcCCC-cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCC--
Confidence            37889999999999  9999        9999999999988 78899999999999999 999999999999988654  


Q ss_pred             hhhchhhHHHHHhcCCCCC-CCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCC
Q 047844          109 IESGVESTARHMLGMKNDE-EDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPS  187 (264)
Q Consensus       109 ~~~~~~~~~~~~l~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~  187 (264)
                                     ++.. |.||||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+..++.+++++|+++|+|
T Consensus        73 ---------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           73 ---------------ADPATLTRPVHDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             ---------------CBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCC-CCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             ---------------cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence                           8888 999999999999999999999999996 78899999999999999999999999999875

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.95  E-value=4e-28  Score=199.71  Aligned_cols=173  Identities=12%  Similarity=0.076  Sum_probs=127.4

Q ss_pred             CCchHHhhhhhhcccccc-----------------cCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCcccee-
Q 047844           12 GEIEPFNQLAIDRQLGSL-----------------VTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ-   73 (264)
Q Consensus        12 g~~~~~~~l~~~~~~~~~-----------------~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~-   73 (264)
                      |+.++++.|++.+-....                 ......+.+|.|+  ..+.        .++++.|++.+.+ ++. 
T Consensus        58 g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~--~~~~--------~~~~~~l~~~g~d-vn~~  126 (327)
T 1sw6_A           58 EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSF--DSLL--------QEVNDAFPNTQLN-LNIP  126 (327)
T ss_dssp             HHHHHHHHHHHHHHC-------------------------------CH--HHHH--------HHHHHHCTTSCCC-SCSC
T ss_pred             chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHH--HhhH--------HHHHHHHHhcCCC-cccc
Confidence            889999999983211000                 0011123347777  7777        8899999999988 777 


Q ss_pred             cCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCC---HHHHHHHhcC
Q 047844           74 VNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGS---LDVVKILLGA  150 (264)
Q Consensus        74 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~---~~~~~~Ll~~  150 (264)
                      .|..|+||||+|+..|+.+++++|+++|++++.                 ++..|.||||+|+..|+   .++++.|++.
T Consensus       127 ~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~-----------------~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~  189 (327)
T 1sw6_A          127 VDEHGNTPLHWLTSIANLELVKHLVKHGSNRLY-----------------GDNMGESCLVKAVKSVNNYDSGTFEALLDY  189 (327)
T ss_dssp             CSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTB-----------------CCTTCCCHHHHHHHSSHHHHTTCHHHHHHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC-----------------cCCCCCCHHHHHHHhcccccHHHHHHHHHh
Confidence            899999999999999999999999999998654                 89999999999999998   6788888877


Q ss_pred             CCCCCCCCCCCCCCHHHHHHH----hChHHHHHHHHhh--------------------CCCCCcCCCCCccHHhHHHhcC
Q 047844          151 DPAFPYSANGSGETPLYLAAA----RAHKEISAEILQK--------------------CPSPAHEGPNGKTALHAAVCSR  206 (264)
Q Consensus       151 g~~~~~~~~~~g~t~Lh~A~~----~~~~~~~~~Ll~~--------------------ga~~~~~~~~g~tpl~~A~~~~  206 (264)
                      +....+..|..|+||||+|+.    .|+.+++++|++.                    |++++.++..|.||||.|+.  
T Consensus       190 ~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~--  267 (327)
T 1sw6_A          190 LYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD--  267 (327)
T ss_dssp             HGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS--
T ss_pred             hhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH--
Confidence            633247889999999999999    8999999999987                    89999999999999999985  


Q ss_pred             ChHHHHHHHhhh
Q 047844          207 SCAASRCHKLHR  218 (264)
Q Consensus       207 ~~~~~~~l~~~~  218 (264)
                          +++|+.+.
T Consensus       268 ----~~~Ll~~~  275 (327)
T 1sw6_A          268 ----LKWIIANM  275 (327)
T ss_dssp             ----HHHHHHHT
T ss_pred             ----HHHHHHhC
Confidence                77777663

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.94  E-value=7.7e-27  Score=167.75  Aligned_cols=127  Identities=24%  Similarity=0.247  Sum_probs=117.4

Q ss_pred             cCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCC
Q 047844           74 VNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPA  153 (264)
Q Consensus        74 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~  153 (264)
                      ....+.||||+|+..|+.+++++|++.|++++.                 ++..|.||||+|+..|+.+++++|++.|++
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~-----------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~   72 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGADVNA-----------------KDEYGLTPLYLATAHGHLEIVEVLLKNGAD   72 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTC-----------------CCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCCCCC-----------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            355678999999999999999999999987544                 889999999999999999999999999999


Q ss_pred             CCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhh
Q 047844          154 FPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHR  218 (264)
Q Consensus       154 ~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~  218 (264)
                      + +..|..|+||||+|+..++.+++++|+++|++++.+|..|.||+++|+..++.+++++|+.++
T Consensus        73 ~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           73 V-NAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             T-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             C-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            6 788999999999999999999999999999999999999999999999999999999998753

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.94  E-value=3.5e-26  Score=161.69  Aligned_cols=125  Identities=34%  Similarity=0.468  Sum_probs=118.3

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCC
Q 047844           77 KGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPY  156 (264)
Q Consensus        77 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~  156 (264)
                      +|+||||+|+..|+.+++++|++.|.+++.                 .+..|.||||+|+..|+.+++++|++.|+++ +
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~-----------------~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~   62 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNA-----------------KDKNGRTPLHLAARNGHLEVVKLLLEAGADV-N   62 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTC-----------------CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-T
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCC-----------------cCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-c
Confidence            589999999999999999999999887544                 8889999999999999999999999999995 7


Q ss_pred             CCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhC
Q 047844          157 SANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRS  219 (264)
Q Consensus       157 ~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~  219 (264)
                      ..|..|.||||+|+..++.+++++|+++|++++.++..|.||+++|+..++.+++++|+.+++
T Consensus        63 ~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             ccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            889999999999999999999999999999999999999999999999999999999998874

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.94  E-value=3.4e-26  Score=161.75  Aligned_cols=126  Identities=33%  Similarity=0.470  Sum_probs=118.8

Q ss_pred             CCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhc
Q 047844           33 KKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESG  112 (264)
Q Consensus        33 ~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~  112 (264)
                      +|.||||.|+  ..|+        .+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|++.|++++.      
T Consensus         1 ~g~t~L~~A~--~~~~--------~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~------   63 (126)
T 1n0r_A            1 NGRTPLHLAA--RNGH--------LEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA------   63 (126)
T ss_dssp             CCCCHHHHHH--HHTC--------HHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC------
T ss_pred             CCccHHHHHH--HcCc--------HHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcc------
Confidence            5899999999  9999        9999999999988 788899999999999999999999999999887544      


Q ss_pred             hhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCC
Q 047844          113 VESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPS  187 (264)
Q Consensus       113 ~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~  187 (264)
                                 ++..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..++.+++++|+++|++
T Consensus        64 -----------~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           64 -----------KDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             -----------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             -----------cCCCCCcHHHHHHHcChHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence                       8889999999999999999999999999995 78899999999999999999999999999985

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.94  E-value=2.3e-26  Score=165.26  Aligned_cols=127  Identities=17%  Similarity=0.197  Sum_probs=117.3

Q ss_pred             cCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhh
Q 047844           30 VTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEI  109 (264)
Q Consensus        30 ~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~  109 (264)
                      ....+.||||.|+  ..|+        .+++++|++.+.+ ++..|..|+||||+|+..|+.+++++|++.|++++.   
T Consensus        10 ~~~~~~t~l~~A~--~~g~--------~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~---   75 (136)
T 2jab_A           10 HGSDLGKKLLEAA--RAGQ--------DDEVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA---   75 (136)
T ss_dssp             --CHHHHHHHHHH--HHTC--------HHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC---
T ss_pred             ccccccHHHHHHH--HhCC--------HHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc---
Confidence            4566889999999  9999        9999999999988 788999999999999999999999999999888544   


Q ss_pred             hhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhC
Q 047844          110 ESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKC  185 (264)
Q Consensus       110 ~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g  185 (264)
                                    ++..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..++.+++++|+++|
T Consensus        76 --------------~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           76 --------------VDAIGFTPLHLAAFIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             --------------CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             --------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence                          8899999999999999999999999999996 788999999999999999999999999876

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.94  E-value=2e-26  Score=169.55  Aligned_cols=132  Identities=17%  Similarity=0.085  Sum_probs=117.8

Q ss_pred             ceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcC
Q 047844           71 LLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGA  150 (264)
Q Consensus        71 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  150 (264)
                      ....+..|.||||+|+..|+.+++++|++.|++++.                 ++..|.||||+|+ .|+.+++++|++.
T Consensus         5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-----------------~~~~g~t~L~~A~-~~~~~~v~~Ll~~   66 (156)
T 1bi7_B            5 AGSSMEPSADWLATAAARGRVEEVRALLEAGANPNA-----------------PNSYGRRPIQVMM-MGSARVAELLLLH   66 (156)
T ss_dssp             -----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTC-----------------CCSSSCCTTTSSC-TTCHHHHHHHHTT
T ss_pred             ccCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCC-----------------CCCCCCCHHHHHH-cCCHHHHHHHHHc
Confidence            345678899999999999999999999999887544                 8899999999985 8999999999999


Q ss_pred             CCCCCCCCCCCCCC-HHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhCCC
Q 047844          151 DPAFPYSANGSGET-PLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSSR  221 (264)
Q Consensus       151 g~~~~~~~~~~g~t-~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~  221 (264)
                      |+++ +..|..|+| |||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+.+++..
T Consensus        67 g~~~-~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~  137 (156)
T 1bi7_B           67 GAEP-NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGT  137 (156)
T ss_dssp             TCCC-CCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---
T ss_pred             CCCC-CCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCC
Confidence            9996 788999999 999999999999999999999999999999999999999999999999999887653

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.94  E-value=2.8e-27  Score=178.69  Aligned_cols=163  Identities=16%  Similarity=0.099  Sum_probs=138.7

Q ss_pred             HHHcCCchHHhhhhh--hccc---------ccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCC
Q 047844            8 AAAKGEIEPFNQLAI--DRQL---------GSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNA   76 (264)
Q Consensus         8 A~~~g~~~~~~~l~~--~~~~---------~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~   76 (264)
                      |++.|..+.+++|++  ....         ....+..|.||||.|+  ..|+        .+++++|++ +.+ ++..|.
T Consensus         7 aa~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~--~~g~--------~~~v~~Ll~-~~~-~~~~d~   74 (183)
T 3deo_A            7 GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAA--RKAD--------EQALSQLLE-DRD-VDAVDE   74 (183)
T ss_dssp             EEEEETTTEEEEEEEETTCCCCEEEEGGGSCHHHHHHHHHHHHHHH--HTTC--------HHHHHHHTT-TSC-TTCCCT
T ss_pred             HHHhcCCchhHHHHHHhCCCCccccchhcccccCCCCCCCHHHHHH--HcCC--------HHHHHHHHh-cCC-CCCcCC
Confidence            456677778888885  1111         0112557899999999  9999        999999999 766 788999


Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCC-CCCCChhhHHHhcCCHHHHHHHhcCCCCCC
Q 047844           77 KGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKN-DEEDTALHEAVQSGSLDVVKILLGADPAFP  155 (264)
Q Consensus        77 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~  155 (264)
                      .|+||||+|+..|+.+++++|+++|++++.                 ++ ..|.||||+|+..|+.+++++|+++|+++ 
T Consensus        75 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-----------------~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-  136 (183)
T 3deo_A           75 NGRTALLFVAGLGSDKCVRLLAEAGADLDH-----------------RDMRGGLTALHMAAGYVRPEVVEALVELGADI-  136 (183)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-----------------CCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCT-
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-----------------CCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCC-
Confidence            999999999999999999999999988654                 66 88999999999999999999999999996 


Q ss_pred             CCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhh
Q 047844          156 YSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLH  217 (264)
Q Consensus       156 ~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~  217 (264)
                      +.+|..|+||||+|+..++.                 ..+.+|+++|+..+..+++++|..+
T Consensus       137 ~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          137 EVEDERGLTALELAREILKT-----------------TPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             TCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             cCCCCCCCCHHHHHHHhccC-----------------cccccHHHHHHHcCHHHHHHHHHHh
Confidence            78999999999999885433                 3468999999999999999998654

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.94  E-value=1.1e-26  Score=167.18  Aligned_cols=128  Identities=23%  Similarity=0.233  Sum_probs=116.9

Q ss_pred             ecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCC
Q 047844           73 QVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADP  152 (264)
Q Consensus        73 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~  152 (264)
                      .+|..|+||||+|+..|+.+++++|++.|++++.                 ++..|.||||+|+..|+.+++++|++.|+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-----------------~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~   67 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNV-----------------KDHAGWTPLHEACNHGHLKVVELLLQHKA   67 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCC-----------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-----------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            5789999999999999999999999999887544                 88999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhh
Q 047844          153 AFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHR  218 (264)
Q Consensus       153 ~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~  218 (264)
                      ++ +..|..|+||||+|+..++.+++++|+++|++++.+|..|.||+++|+..+..++++++....
T Consensus        68 ~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~  132 (137)
T 3c5r_A           68 LV-NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE  132 (137)
T ss_dssp             CT-TCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred             cc-cCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence            95 788999999999999999999999999999999999999999999999999888887765543

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.93  E-value=1.9e-27  Score=187.74  Aligned_cols=161  Identities=16%  Similarity=0.080  Sum_probs=135.8

Q ss_pred             HHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHH
Q 047844            8 AAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAAR   87 (264)
Q Consensus         8 A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~   87 (264)
                      ++..|+.+.+..+......   .+..|.||||.|+  ..|+        .+++++|++ +.+ ++..|..|+||||+|+.
T Consensus        22 ~~~~g~~~~~~~~~~~~~~---~~~~g~t~L~~A~--~~g~--------~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A~~   86 (244)
T 3ui2_A           22 EWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAA--RKAD--------EQALSQLLE-DRD-VDAVDENGRTALLFVAG   86 (244)
T ss_dssp             EESSCCCCEEEEGGGSCHH---HHHHHHHHHHHHH--TTTC--------HHHHHHTTT-TCC-TTCBCTTSCBHHHHHHH
T ss_pred             HHHcCCCcccccccccccc---cccCCCCHHHHHH--HcCC--------HHHHHHHHc-CCC-CCCcCCCCCCHHHHHHH
Confidence            3344555554444432222   3567999999999  9999        999999999 776 78999999999999999


Q ss_pred             hCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCC-CCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHH
Q 047844           88 YGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKN-DEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPL  166 (264)
Q Consensus        88 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L  166 (264)
                      .|+.+++++|+++|++++.                 ++ ..|.||||+|+..|+.+++++|+++|+++ +.+|..|+|||
T Consensus        87 ~g~~~~v~~Ll~~ga~~~~-----------------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l  148 (244)
T 3ui2_A           87 LGSDKCVRLLAEAGADLDH-----------------RDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTAL  148 (244)
T ss_dssp             HTCHHHHHHHHHTTCCTTC-----------------CCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHH
T ss_pred             CCCHHHHHHHHHcCCCCCc-----------------CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHH
Confidence            9999999999999988654                 66 78999999999999999999999999996 78999999999


Q ss_pred             HHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhh
Q 047844          167 YLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHR  218 (264)
Q Consensus       167 h~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~  218 (264)
                      |+|+..+.                 ...+.+|+++|+..|+.+++++|..+.
T Consensus       149 ~~A~~~~~-----------------~~~~~~~l~~a~~~g~~~iv~~L~~~~  183 (244)
T 3ui2_A          149 ELAREILK-----------------TTPKGNPMQFGRRIGLEKVINVLEGQV  183 (244)
T ss_dssp             HHHHHHHT-----------------TCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHh-----------------ccCCCCHHHHHHHcChHHHHHHHHHhc
Confidence            99986322                 256899999999999999999998763

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.93  E-value=1.8e-28  Score=204.46  Aligned_cols=184  Identities=16%  Similarity=0.141  Sum_probs=144.1

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcc---cccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCcc--ceecCC
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQ---LGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSL--LLQVNA   76 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~---~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~--~~~~~~   76 (264)
                      +||||+||..|+.+++++|++.+.   .....+..|.||||+|+  ..|+        .+++++|++.+++.  .+..+.
T Consensus        93 ~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa--~~G~--------~eiv~~Ll~~gad~~~~~i~~~  162 (376)
T 2aja_A           93 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAA--ENGH--------LHVLNRLCELAPTEIMAMIQAE  162 (376)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHH--HTTC--------HHHHHHHHHSCTTTHHHHHSHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHH--HcCC--------HHHHHHHHhCCCCccccccCCC
Confidence            389999999999999999998433   11125667889999999  9999        99999999999641  112222


Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHH-hcCCHHHHHHHhcCCCCCC
Q 047844           77 KGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAV-QSGSLDVVKILLGADPAFP  155 (264)
Q Consensus        77 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~-~~~~~~~~~~Ll~~g~~~~  155 (264)
                      + .||||+|+..|+.+++++|+++|+++..               +..+..|.||||+|+ ..|+.+++++|++.|+   
T Consensus       163 ~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~---------------~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga---  223 (376)
T 2aja_A          163 N-YHAFRLAAENGHLHVLNRLCELAPTEAT---------------AMIQAENYYAFRWAAVGRGHHNVINFLLDCPV---  223 (376)
T ss_dssp             H-HHHHHHHHHTTCHHHHHHHHHSCGGGHH---------------HHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH---
T ss_pred             C-CCHHHHHHHCCCHHHHHHHHHcCCccch---------------hccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC---
Confidence            2 8999999999999999999999987532               013445789999999 9999999999998763   


Q ss_pred             CCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCc---------------------------------------------
Q 047844          156 YSANGSGETPLYLAAARAHKEISAEILQKCPSPAH---------------------------------------------  190 (264)
Q Consensus       156 ~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~---------------------------------------------  190 (264)
                           .|.||||+|+..|+.+++++|+++|++++.                                             
T Consensus       224 -----~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~  298 (376)
T 2aja_A          224 -----MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIR  298 (376)
T ss_dssp             -----HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHH
T ss_pred             -----ccchHHHHHHHCCCHHHHHHHHhcCcccccccHHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHH
Confidence                 278999999999999999999887543210                                             


Q ss_pred             ----------------CCCCCccHHhHHHhcCChHHHHHHHhhhC
Q 047844          191 ----------------EGPNGKTALHAAVCSRSCAASRCHKLHRS  219 (264)
Q Consensus       191 ----------------~~~~g~tpl~~A~~~~~~~~~~~l~~~~~  219 (264)
                                      ....+.+|+++|+..|+.+++++|+..+.
T Consensus       299 ~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~~  343 (376)
T 2aja_A          299 FLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPS  343 (376)
T ss_dssp             HHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSHH
T ss_pred             HHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcChH
Confidence                            11234578999999999999999987654

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.93  E-value=6.3e-28  Score=201.13  Aligned_cols=177  Identities=17%  Similarity=0.117  Sum_probs=142.4

Q ss_pred             HHHHHHH-cCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCcc--ceecCCCCCh
Q 047844            4 DLYEAAA-KGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSL--LLQVNAKGDA   80 (264)
Q Consensus         4 ~l~~A~~-~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~--~~~~~~~g~t   80 (264)
                      .+++|+. .++.+.++++++.       +.++.||||.|+  ..|+        .+++++|++.+...  .+..+..|.|
T Consensus        68 ~~~~a~~~~~~~~~~~~l~~~-------g~~~~T~Lh~Aa--~~G~--------~e~v~~Ll~~ga~~~~~~~~~~~~~t  130 (376)
T 2aja_A           68 CLYYAHYNRNAKQLWSDAHKK-------GIKSEVICFVAA--ITGC--------SSALDTLCLLLTSDEIVKVIQAENYQ  130 (376)
T ss_dssp             HHHHHHTTTTCTTHHHHHHHH-------TCCHHHHHHHHH--HHCC--------HHHHHHHTTC--CCSSCC--CHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHc-------CCCcCCHHHHHH--HcCC--------HHHHHHHHHcCCcHHHHHHhccCCCC
Confidence            4566666 5777888888762       334569999999  9999        99999999998731  1234556889


Q ss_pred             HHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCC--C
Q 047844           81 PLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYS--A  158 (264)
Q Consensus        81 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~--~  158 (264)
                      |||+|+..|+.+++++|+++|++....+            +  .+.+ .||||+|+..|+.+++++|+++|+++ +.  .
T Consensus       131 pL~~Aa~~G~~eiv~~Ll~~gad~~~~~------------i--~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~-~~~~~  194 (376)
T 2aja_A          131 AFRLAAENGHLHVLNRLCELAPTEIMAM------------I--QAEN-YHAFRLAAENGHLHVLNRLCELAPTE-ATAMI  194 (376)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSCTTTHHHH------------H--SHHH-HHHHHHHHHTTCHHHHHHHHHSCGGG-HHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCCccccc------------c--CCCC-CCHHHHHHHCCCHHHHHHHHHcCCcc-chhcc
Confidence            9999999999999999999996432110            1  1222 79999999999999999999999985 44  6


Q ss_pred             CCCCCCHHHHHH-HhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhCC
Q 047844          159 NGSGETPLYLAA-ARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSS  220 (264)
Q Consensus       159 ~~~g~t~Lh~A~-~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~  220 (264)
                      |..|+||||+|+ ..|+.+++++|++.|++       |.||+++|+.+|+.+++++|+.+++.
T Consensus       195 d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~-------~~taL~~Aa~~g~~evv~lL~~~ga~  250 (376)
T 2aja_A          195 QAENYYAFRWAAVGRGHHNVINFLLDCPVM-------LAYAEIHEFEYGEKYVNPFIARHVNR  250 (376)
T ss_dssp             HHHHHHHHHHHHSTTCCHHHHHHHTTSHHH-------HHHHHHCTTTTTTTTHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHCCCHHHHHHHHhCCCc-------cchHHHHHHHCCCHHHHHHHHhcCcc
Confidence            778999999999 99999999999997742       89999999999999999999988763

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.92  E-value=2.5e-25  Score=157.02  Aligned_cols=117  Identities=21%  Similarity=0.248  Sum_probs=105.3

Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCC
Q 047844           75 NAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAF  154 (264)
Q Consensus        75 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~  154 (264)
                      +..|.||||+|+..|+.+++++|++.|.+++                 .++..|.||||+|+..|+.+++++|++.|+++
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~-----------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~   66 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVN-----------------RTLEGGRKPLHYAADCGQLEILEFLLLKGADI   66 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTT-----------------SCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcC-----------------ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            4678899999999999999999999988754                 48899999999999999999999999999995


Q ss_pred             CCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChH
Q 047844          155 PYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCA  209 (264)
Q Consensus       155 ~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~  209 (264)
                       +..|..|+||||+|+..++.+++++|+++|++++.+|..|.||+++|...+..+
T Consensus        67 -~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~  120 (123)
T 3aaa_C           67 -NAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKA  120 (123)
T ss_dssp             -TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHH
T ss_pred             -CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHH
Confidence             788999999999999999999999999999999999999999999995544433

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.92  E-value=1.7e-25  Score=160.85  Aligned_cols=127  Identities=24%  Similarity=0.303  Sum_probs=115.6

Q ss_pred             cCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhh
Q 047844           30 VTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEI  109 (264)
Q Consensus        30 ~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~  109 (264)
                      .|..|.||||.|+  ..|+        .+++++|++.+.+ ++..|..|+||||+|+..|+.+++++|++.|++++.   
T Consensus         6 ~~~~g~t~L~~A~--~~~~--------~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~---   71 (137)
T 3c5r_A            6 TNHRGETLLHIAS--IKGD--------IPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT---   71 (137)
T ss_dssp             CCTTCCCHHHHHH--HHTC--------HHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC---
T ss_pred             cCCCCCCHHHHHH--HcCC--------HHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccC---
Confidence            6899999999999  9999        9999999999988 788999999999999999999999999999887544   


Q ss_pred             hhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhC
Q 047844          110 ESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKC  185 (264)
Q Consensus       110 ~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~g  185 (264)
                                    ++..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||+|+|+..+..++++++.+.+
T Consensus        72 --------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~  132 (137)
T 3c5r_A           72 --------------TGYQNDSPLHDAAKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDYTDDESMKSLLLLPEKNE  132 (137)
T ss_dssp             --------------CCGGGCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred             --------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence                          8889999999999999999999999999996 789999999999999999988888776654

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.92  E-value=8.6e-25  Score=177.53  Aligned_cols=140  Identities=23%  Similarity=0.201  Sum_probs=121.7

Q ss_pred             CCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCcccee------cCCCCChHHHHHHHh---CCHHHHHHHHHHhhhc
Q 047844           34 KNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ------VNAKGDAPLHVAARY---GHAAVVEALIEIAKQE  104 (264)
Q Consensus        34 g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~------~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~  104 (264)
                      +.++|+.|+  ..|+        .+.++.|++.+.+ ++.      .+..|+||||+|+..   |+.+++++|+++|+++
T Consensus       151 ~~~~L~~A~--~~g~--------~~~v~~ll~~g~d-~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv  219 (301)
T 2b0o_E          151 EPQRLWTAI--CNRD--------LLSVLEAFANGQD-FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL  219 (301)
T ss_dssp             CHHHHHHHH--HTTC--------HHHHHHHHHTTCC-TTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT
T ss_pred             hHHHHhhhh--hccC--------HHHHHHHHhcCCc-ccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC
Confidence            346799999  9999        9999999999988 555      688999999999997   8999999999999885


Q ss_pred             chhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhh
Q 047844          105 SDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQK  184 (264)
Q Consensus       105 ~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~  184 (264)
                      +.                 +|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..++.+++++|+++
T Consensus       220 n~-----------------~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~  281 (301)
T 2b0o_E          220 DA-----------------KAADGNTALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQA  281 (301)
T ss_dssp             TC-----------------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CC-----------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            44                 8999999999999999999999999999996 78999999999999999999999999999


Q ss_pred             CCCCCcCCCCCccHHhHHHhcCCh
Q 047844          185 CPSPAHEGPNGKTALHAAVCSRSC  208 (264)
Q Consensus       185 ga~~~~~~~~g~tpl~~A~~~~~~  208 (264)
                      |++      .|.||||+|+.+|+.
T Consensus       282 ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          282 QAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHH------TTSSCCC--------
T ss_pred             cCC------CCCChhHHHHhcCCc
Confidence            986      578999999988763

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.92  E-value=3.7e-25  Score=172.08  Aligned_cols=132  Identities=22%  Similarity=0.208  Sum_probs=114.1

Q ss_pred             cCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcC-CC
Q 047844           74 VNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGA-DP  152 (264)
Q Consensus        74 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~  152 (264)
                      .+..|.||||+|+..|+.+++++|++.|++++                 .++..|.||||+|+..|+.+++++|++. |+
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-----------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~  131 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVN-----------------GLDKAGSTALYWACHGGHKDIVEMLFTQPNI  131 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTCCTT-----------------CCCTTSCCHHHHHHHTTCHHHHHHHTTSTTC
T ss_pred             cccccccccccccccCcHHHHHHHHhCCCCcc-----------------ccCCCCCCHHHHHHHcCCHHHHHHHHcCCCC
Confidence            45678999999999999999999999988754                 4889999999999999999999999998 88


Q ss_pred             CCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhCCCCC
Q 047844          153 AFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSSRFL  223 (264)
Q Consensus       153 ~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~~~  223 (264)
                      ++ +..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..++.++++.++..++....
T Consensus       132 ~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~  201 (222)
T 3ehr_A          132 EL-NQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTL  201 (222)
T ss_dssp             CC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-----------
T ss_pred             Cc-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhc
Confidence            85 78999999999999999999999999999999999999999999999999999999999888765443

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.91  E-value=3.7e-25  Score=172.08  Aligned_cols=137  Identities=18%  Similarity=0.178  Sum_probs=113.3

Q ss_pred             cCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHH-hhhcchhh
Q 047844           30 VTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEI-AKQESDQE  108 (264)
Q Consensus        30 ~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~  108 (264)
                      .+..|.||||.|+  ..|+        .+++++|++.+.+ ++..|..|+||||+|+..|+.+++++|++. |++++   
T Consensus        69 ~~~~g~t~L~~A~--~~g~--------~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~---  134 (222)
T 3ehr_A           69 QAESIDNPLHEAA--KRGN--------LSWLRECLDNRVG-VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELN---  134 (222)
T ss_dssp             HEEEESCHHHHHH--HHTC--------HHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCC---
T ss_pred             ccccccccccccc--ccCc--------HHHHHHHHhCCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCcc---
Confidence            3557899999999  9999        9999999999988 788999999999999999999999999998 77754   


Q ss_pred             hhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCC
Q 047844          109 IESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSP  188 (264)
Q Consensus       109 ~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~  188 (264)
                                    .++..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..++.++++.|+..++..
T Consensus       135 --------------~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~  199 (222)
T 3ehr_A          135 --------------QQNKLGDTALHAAAWKGYADIVQLLLAKGART-DLRNIEKKLAFDMATNAACASLLKKKQGTDAVR  199 (222)
T ss_dssp             --------------CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCS-CCCCTTSCCHHHHCCSHHHHHHHC---------
T ss_pred             --------------ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCCHHHHhcchhHHHHHHHHhccchhh
Confidence                          48999999999999999999999999999996 789999999999999999999999999999988


Q ss_pred             CcCCCCC
Q 047844          189 AHEGPNG  195 (264)
Q Consensus       189 ~~~~~~g  195 (264)
                      +..+..+
T Consensus       200 ~~~~~~~  206 (222)
T 3ehr_A          200 TLSNAED  206 (222)
T ss_dssp             -------
T ss_pred             hccchhh
Confidence            7776554

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.91  E-value=2e-24  Score=152.28  Aligned_cols=119  Identities=19%  Similarity=0.199  Sum_probs=105.6

Q ss_pred             cCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhh
Q 047844           30 VTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEI  109 (264)
Q Consensus        30 ~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~  109 (264)
                      .+..|.||||.|+  ..|+        .+++++|++.+.+ ++..|..|+||||+|+..|+.+++++|++.|++++.   
T Consensus         3 ~~~~~~~~l~~A~--~~~~--------~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~---   68 (123)
T 3aaa_C            3 LGSMCDKEFMWAL--KNGD--------LDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA---   68 (123)
T ss_dssp             ----CHHHHHHHH--HTTC--------HHHHHHHHHTTCC-TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTC---
T ss_pred             cccccchHHHHHH--HcCC--------HHHHHHHHHcCCC-cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCc---
Confidence            4667899999999  9999        9999999999988 788999999999999999999999999999988544   


Q ss_pred             hhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHH
Q 047844          110 ESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEI  177 (264)
Q Consensus       110 ~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~  177 (264)
                                    ++..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||+|+|...+..++
T Consensus        69 --------------~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~l  121 (123)
T 3aaa_C           69 --------------PDKHHITPLLSAVYEGHVSCVKLLLSKGADK-TVKGPDGLTAFEATDNQAIKAL  121 (123)
T ss_dssp             --------------CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCCHHHHHH
T ss_pred             --------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHhCCHHHHHH
Confidence                          8999999999999999999999999999995 7899999999999965544443

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.91  E-value=1.3e-24  Score=176.49  Aligned_cols=138  Identities=20%  Similarity=0.191  Sum_probs=117.1

Q ss_pred             cHHHHHHHcCCchHHhhhhhhcccccc------cCCCCCchhHHHHHHhh---hcCcCCCcccHHHHHHHHHhCCcccee
Q 047844            3 SDLYEAAAKGEIEPFNQLAIDRQLGSL------VTHKKNTVLHVNIIASY---TQNKEGESVSTKFVERIIEMCPSLLLQ   73 (264)
Q Consensus         3 ~~l~~A~~~g~~~~~~~l~~~~~~~~~------~~~~g~t~L~~A~~~~~---g~~~~~~~~~~~~~~~ll~~~~~~~~~   73 (264)
                      ++|+.|+..|+++.++.|++.....+.      .+..|.||||+|+  ..   |+        .+++++|++++.+ ++.
T Consensus       153 ~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~--~~~~~~~--------~~iv~~Ll~~gad-vn~  221 (301)
T 2b0o_E          153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAV--KVANQAS--------LPLVDFIIQNGGH-LDA  221 (301)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHH--HTCCTTT--------HHHHHHHHHHSSC-TTC
T ss_pred             HHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHH--HhcccCc--------HHHHHHHHhcCCC-CCC
Confidence            469999999999999999983322222      4788999999999  87   88        9999999999998 789


Q ss_pred             cCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCC
Q 047844           74 VNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPA  153 (264)
Q Consensus        74 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~  153 (264)
                      .|..|+||||+|+..|+.+++++|++.|++++.                 +|..|.|||++|+..|+.+++++|++.|++
T Consensus       222 ~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~-----------------~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~  284 (301)
T 2b0o_E          222 KAADGNTALHYAALYNQPDCLKLLLKGRALVGT-----------------VNEAGETALDIARKKHHKECEELLEQAQAG  284 (301)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSC-----------------CCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-----------------cCCCCCCHHHHHHHcCCHHHHHHHHHhcCC
Confidence            999999999999999999999999999998654                 899999999999999999999999998876


Q ss_pred             CCCCCCCCCCCHHHHHHHhChH
Q 047844          154 FPYSANGSGETPLYLAAARAHK  175 (264)
Q Consensus       154 ~~~~~~~~g~t~Lh~A~~~~~~  175 (264)
                             .|.||||+|+..|+.
T Consensus       285 -------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          285 -------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             -------TTSSCCC--------
T ss_pred             -------CCCChhHHHHhcCCc
Confidence                   479999999988763

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.91  E-value=8.2e-24  Score=159.61  Aligned_cols=136  Identities=21%  Similarity=0.202  Sum_probs=120.3

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecC-CCCCh
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVN-AKGDA   80 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~-~~g~t   80 (264)
                      .||||+|+..|+.++++.|++ ....+..|..|.||||+|+  ..|+        .+++++|++.+.+ ++..+ ..|+|
T Consensus        45 ~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~--~~~~--------~~~v~~Ll~~ga~-~~~~~~~~g~t  112 (183)
T 3deo_A           45 ETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVA--GLGS--------DKCVRLLAEAGAD-LDHRDMRGGLT  112 (183)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHH--HHTC--------HHHHHHHHHTTCC-TTCCCSSSSCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHH--HcCC--------HHHHHHHHHcCCC-CCcCCCCCCCC
Confidence            479999999999999999999 4344558999999999999  9999        9999999999999 66666 89999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCC
Q 047844           81 PLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANG  160 (264)
Q Consensus        81 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  160 (264)
                      |||+|+..|+.+++++|+++|++++.                 ++..|.||||+|+..++.                  .
T Consensus       113 pL~~A~~~~~~~~v~~Ll~~ga~~~~-----------------~d~~g~tpl~~A~~~~~~------------------~  157 (183)
T 3deo_A          113 ALHMAAGYVRPEVVEALVELGADIEV-----------------EDERGLTALELAREILKT------------------T  157 (183)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCCTTC-----------------CCTTSCCHHHHHHHHHHT------------------C
T ss_pred             HHHHHHhcCcHHHHHHHHHcCCCCcC-----------------CCCCCCCHHHHHHHhccC------------------c
Confidence            99999999999999999999988554                 899999999999874322                  3


Q ss_pred             CCCCHHHHHHHhChHHHHHHHHhh
Q 047844          161 SGETPLYLAAARAHKEISAEILQK  184 (264)
Q Consensus       161 ~g~t~Lh~A~~~~~~~~~~~Ll~~  184 (264)
                      .+.++|++|+..|..+++++|.++
T Consensus       158 ~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          158 PKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             ccccHHHHHHHcCHHHHHHHHHHh
Confidence            468999999999999999999765

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.91  E-value=9e-24  Score=166.65  Aligned_cols=139  Identities=21%  Similarity=0.193  Sum_probs=122.4

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecC-CCCCh
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVN-AKGDA   80 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~-~~g~t   80 (264)
                      +||||+|+..|+.++++.|++ ....+..|..|.||||+|+  ..|+        .+++++|++.+.+ ++..+ ..|+|
T Consensus        46 ~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~--~~g~--------~~~v~~Ll~~ga~-~~~~~~~~g~t  113 (244)
T 3ui2_A           46 ETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVA--GLGS--------DKCVRLLAEAGAD-LDHRDMRGGLT  113 (244)
T ss_dssp             HHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHH--HHTC--------HHHHHHHHHTTCC-TTCCCSSSCCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHH--HCCC--------HHHHHHHHHcCCC-CCcCCCCCCCC
Confidence            479999999999999999999 3344458999999999999  9999        9999999999999 66666 88999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCC
Q 047844           81 PLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANG  160 (264)
Q Consensus        81 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  160 (264)
                      |||+|+..|+.+++++|+++|++++.                 ++..|.||||+|+..+.                  ..
T Consensus       114 ~L~~A~~~g~~~~v~~Ll~~ga~~~~-----------------~d~~g~t~l~~A~~~~~------------------~~  158 (244)
T 3ui2_A          114 ALHMAAGYVRPEVVEALVELGADIEV-----------------EDERGLTALELAREILK------------------TT  158 (244)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTC-----------------CCTTCCCHHHHHHHHHT------------------TC
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCC-----------------CCCCCCcHHHHHHHHHh------------------cc
Confidence            99999999999999999999988554                 89999999999986321                  24


Q ss_pred             CCCCHHHHHHHhChHHHHHHHHhhCCC
Q 047844          161 SGETPLYLAAARAHKEISAEILQKCPS  187 (264)
Q Consensus       161 ~g~t~Lh~A~~~~~~~~~~~Ll~~ga~  187 (264)
                      .+.||||+|+..|+.+++++|++.+.+
T Consensus       159 ~~~~~l~~a~~~g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          159 PKGNPMQFGRRIGLEKVINVLEGQVFE  185 (244)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             CCCCHHHHHHHcChHHHHHHHHHhccc
Confidence            579999999999999999999987543

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.90  E-value=1.7e-23  Score=168.08  Aligned_cols=131  Identities=21%  Similarity=0.154  Sum_probs=118.5

Q ss_pred             ChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhc---CCHHHHHHHhcCCCCCC
Q 047844           79 DAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQS---GSLDVVKILLGADPAFP  155 (264)
Q Consensus        79 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~g~~~~  155 (264)
                      .++|+.|+..|+.+.++.++..|.+....           ..++..+..|.||||+|+..   |+.+++++|++.|+++ 
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~-----------~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-  198 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEK-----------IPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-  198 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSB-----------CCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhh-----------ccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-
Confidence            57899999999999999999998875321           01344678899999999999   8999999999999996 


Q ss_pred             CCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhCCC
Q 047844          156 YSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSSR  221 (264)
Q Consensus       156 ~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~  221 (264)
                      +.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+.+++.+
T Consensus       199 n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          199 DKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            789999999999999999999999999999999999999999999999999999999999998754

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.88  E-value=2.9e-22  Score=134.04  Aligned_cols=90  Identities=31%  Similarity=0.389  Sum_probs=43.4

Q ss_pred             CCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCC
Q 047844          128 EDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRS  207 (264)
Q Consensus       128 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~  207 (264)
                      |.||||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+..++.+++++|+++|++++.+|..|.||||+|+..++
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            344444444444444444444444443 3444444555555554444555555554444444444445555555555555


Q ss_pred             hHHHHHHHhhh
Q 047844          208 CAASRCHKLHR  218 (264)
Q Consensus       208 ~~~~~~l~~~~  218 (264)
                      .+++++|+.++
T Consensus        81 ~~~~~~Ll~~g   91 (93)
T 1n0q_A           81 LEVVKLLLEAG   91 (93)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHcC
Confidence            55554444443

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.88  E-value=1.5e-22  Score=168.12  Aligned_cols=126  Identities=17%  Similarity=0.190  Sum_probs=77.4

Q ss_pred             CCCChHHHHHHHh-CCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCC--CCCCChhhHHHhcCCHHHHHHHhcCCC
Q 047844           76 AKGDAPLHVAARY-GHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKN--DEEDTALHEAVQSGSLDVVKILLGADP  152 (264)
Q Consensus        76 ~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~g~  152 (264)
                      ..+.|+||.|+.. |+.+++++|++.|++++.                 .+  ..|.||||+|+..|+.+++++|+++|+
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~-----------------~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Ga  259 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGADVNW-----------------VNGGQDNATPLIQATAANSLLACEFLLQNGA  259 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTC-----------------CCTTTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCCCCCc-----------------cccccCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            3445666666666 666666666666655433                 33  556666666666666666666666666


Q ss_pred             CCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhC
Q 047844          153 AFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRS  219 (264)
Q Consensus       153 ~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~  219 (264)
                      ++ +..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+..+.
T Consensus       260 dv-n~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~  325 (368)
T 3jue_A          260 NV-NQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKM  325 (368)
T ss_dssp             CT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC
T ss_pred             CC-CCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            64 4556666666666666666666666666666666666666666666666666666666655543

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.88  E-value=3.3e-22  Score=166.11  Aligned_cols=132  Identities=17%  Similarity=0.144  Sum_probs=104.5

Q ss_pred             ccHHHHHHHHHhCCccceecC--CCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChh
Q 047844           55 VSTKFVERIIEMCPSLLLQVN--AKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTAL  132 (264)
Q Consensus        55 ~~~~~~~~ll~~~~~~~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L  132 (264)
                      -..+++++|++.+.+ ++..+  ..|.||||+|+..|+.+++++|+++|++++.                 +|..|.|||
T Consensus       211 g~~~~v~~LL~~Gad-vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~-----------------~d~~G~TpL  272 (368)
T 3jue_A          211 PSLPTMADALAHGAD-VNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQ-----------------ADSAGRGPL  272 (368)
T ss_dssp             CCHHHHHHHHHTTCC-TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-----------------CCTTSCCHH
T ss_pred             CCHHHHHHHHHcCCC-CCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC-----------------CCCCCCCHH
Confidence            357899999999999 77777  8999999999999999999999999988544                 899999999


Q ss_pred             hHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCC---CCCcCCCCCccHHhHHHhc
Q 047844          133 HEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCP---SPAHEGPNGKTALHAAVCS  205 (264)
Q Consensus       133 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga---~~~~~~~~g~tpl~~A~~~  205 (264)
                      |+|+..|+.+++++|++.|+++ +..|..|.||||+|+..++.+++++|+..+.   +....+..+.|+++++...
T Consensus       273 h~A~~~g~~~~v~~LL~~Gad~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          273 HHATILGHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred             HHHHHcCcHHHHHHHHHCcCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence            9999999999999999999996 7899999999999999999999999998863   3344556677777776544

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.88  E-value=9.8e-22  Score=157.80  Aligned_cols=126  Identities=21%  Similarity=0.225  Sum_probs=115.6

Q ss_pred             CchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCcc-----ceecCCCCChHHHHHHHh---CCHHHHHHHHHHhhhcch
Q 047844           35 NTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSL-----LLQVNAKGDAPLHVAARY---GHAAVVEALIEIAKQESD  106 (264)
Q Consensus        35 ~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~-----~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~  106 (264)
                      .++|+.|+  ..|+        .+.++.+++.+.+.     ++..+..|+||||+|+..   |+.+++++|+++|++++.
T Consensus       131 l~~l~~a~--~~~d--------~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~  200 (278)
T 1dcq_A          131 LHSLCEAV--KTRD--------IFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDK  200 (278)
T ss_dssp             HHHHHHHH--HTTC--------HHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTC
T ss_pred             hhhhhhHh--hhcc--------cHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccc
Confidence            46899999  9999        99999999999884     344588999999999999   899999999999998554


Q ss_pred             hhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCC
Q 047844          107 QEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCP  186 (264)
Q Consensus       107 ~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga  186 (264)
                                       +|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|+++|+
T Consensus       201 -----------------~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga  262 (278)
T 1dcq_A          201 -----------------QTGKGSTALHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALS  262 (278)
T ss_dssp             -----------------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             -----------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence                             8999999999999999999999999999996 7899999999999999999999999999987


Q ss_pred             CC
Q 047844          187 SP  188 (264)
Q Consensus       187 ~~  188 (264)
                      +.
T Consensus       263 ~~  264 (278)
T 1dcq_A          263 GR  264 (278)
T ss_dssp             TC
T ss_pred             CC
Confidence            53

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.88  E-value=6.5e-22  Score=132.34  Aligned_cols=66  Identities=35%  Similarity=0.495  Sum_probs=60.6

Q ss_pred             hcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCC
Q 047844          121 LGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPS  187 (264)
Q Consensus       121 l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~  187 (264)
                      ++.++..|.||||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+..++.+++++|+++|++
T Consensus        28 ~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           28 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            4678889999999999999999999999999995 78899999999999999999999999999875

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.87  E-value=1.5e-22  Score=140.95  Aligned_cols=109  Identities=27%  Similarity=0.366  Sum_probs=96.5

Q ss_pred             ecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCC
Q 047844           73 QVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADP  152 (264)
Q Consensus        73 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~  152 (264)
                      .+|.+|+||||+|+..|+.+++++|++.|++++.                 ++..|.||||+|+..|+.+++++|++.|+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-----------------~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~   66 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNA-----------------RSKDGNTPLHLAAKNGHAEIVKLLLAKGA   66 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSC-----------------CCSSSCCTTHHHHTTTCHHHHHHHTTTTC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-----------------cCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            4688999999999999999999999998877544                 88899999999999999999999999999


Q ss_pred             CCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHH
Q 047844          153 AFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTAL  199 (264)
Q Consensus       153 ~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl  199 (264)
                      ++ +.+|..|+||||+|+..++.+++++|+++|++++.++..|.+|-
T Consensus        67 ~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           67 DV-NARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             CT-TCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             CC-cccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            85 68888999999999999999999999999999999999888874

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.84  E-value=2.3e-21  Score=134.89  Aligned_cols=109  Identities=21%  Similarity=0.315  Sum_probs=98.8

Q ss_pred             ccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhh
Q 047844           29 LVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQE  108 (264)
Q Consensus        29 ~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~  108 (264)
                      ..|.+|.||||.|+  ..|+        .+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.|++++.  
T Consensus         4 ~~d~~g~t~L~~A~--~~~~--------~~~~~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~--   70 (115)
T 2l6b_A            4 WGSKDGNTPLHNAA--KNGH--------AEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA--   70 (115)
T ss_dssp             CCSCSSCCHHHHHH--HHTC--------HHHHHHHTTTTCC-SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTC--
T ss_pred             ccCCCCCCHHHHHH--HcCC--------HHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcc--
Confidence            37899999999999  9999        9999999999988 788999999999999999999999999999988544  


Q ss_pred             hhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHH
Q 047844          109 IESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPL  166 (264)
Q Consensus       109 ~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L  166 (264)
                                     ++..|.||||+|+..|+.+++++|+++|+++ +.++..|.+|-
T Consensus        71 ---------------~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~-n~~~~~~~~~~  112 (115)
T 2l6b_A           71 ---------------RSKDGNTPEHLAKKNGHHEIVKLLDAKGADV-NARSWGSSHHH  112 (115)
T ss_dssp             ---------------CCTTCCCTTHHHHTTTCHHHHHHHHTTSSSH-HHHSCCCC---
T ss_pred             ---------------cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCCccccccc
Confidence                           8899999999999999999999999999996 67888888874

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.80  E-value=2.7e-19  Score=123.39  Aligned_cols=93  Identities=24%  Similarity=0.274  Sum_probs=85.1

Q ss_pred             hcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHh
Q 047844          121 LGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALH  200 (264)
Q Consensus       121 l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~  200 (264)
                      ....+.+|.|+||+|+..|+.+++++|++.|+++ +..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~   95 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFD   95 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHH
Confidence            3447889999999999999999999999999996 788999999999999999999999999999999999999999999


Q ss_pred             HHHhcCChHHHHHH
Q 047844          201 AAVCSRSCAASRCH  214 (264)
Q Consensus       201 ~A~~~~~~~~~~~l  214 (264)
                      +|+..++.+++++|
T Consensus        96 ~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           96 ISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHh
Confidence            99999999999886

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.78  E-value=8.8e-19  Score=120.77  Aligned_cols=93  Identities=24%  Similarity=0.327  Sum_probs=82.8

Q ss_pred             ceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcC
Q 047844           71 LLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGA  150 (264)
Q Consensus        71 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  150 (264)
                      ....+.+|.||||+|+..|+.+++++|++.|++++                 .++..|.||||+|+..|+.+++++|++.
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~-----------------~~d~~g~tpLh~A~~~~~~~~v~~Ll~~   79 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVA-----------------AKDKNGSTPLHLAARNGHLEVVKLLLEA   79 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTT-----------------CCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCC-----------------ccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            45668899999999999999999999999988754                 4889999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHhChHHHHHHH
Q 047844          151 DPAFPYSANGSGETPLYLAAARAHKEISAEI  181 (264)
Q Consensus       151 g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~L  181 (264)
                      |+++ +.+|..|+||||+|+..++.+++++|
T Consensus        80 ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           80 GADV-XAQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             TCCT-TCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             CCCc-cccccCCCcHHHHHHHcCCHHHHHHh
Confidence            9995 78999999999999999999999887

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	264
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-12
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-12
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	0.003
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-13
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	8e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	9e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.002
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-10
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	8e-10
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-08
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-09
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-08
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-08
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.002
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	9e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	7e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	7e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	0.001
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	7e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	0.001
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	8e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.001
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	6e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	7e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.004
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.002
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.003
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.003

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.7 bits (177), Expect = 2e-15
 Identities = 34/139 (24%), Positives = 52/139 (37%), Gaps = 22/139 (15%)

Query: 81  PLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGS 140
           PLHVA+  GH  +V+ L++            G          + N + +T LH A ++G 
Sbjct: 3   PLHVASFMGHLPIVKNLLQ-----------RGAS------PNVSNVKVETPLHMAARAGH 45

Query: 141 LDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTA 198
            +V K LL   A      +     +TPL+ AA   H  +   +L+   +P      G T 
Sbjct: 46  TEVAKYLLQNKAKVN---AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTP 102

Query: 199 LHAAVCSRSCAASRCHKLH 217
           LH A               
Sbjct: 103 LHIAAREGHVETVLALLEK 121

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (154), Expect = 3e-12
 Identities = 42/203 (20%), Positives = 76/203 (37%), Gaps = 39/203 (19%)

Query: 2   NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVE 61
            + L+ AA + ++E    L       +  + +  T LH   +A+   + E        + 
Sbjct: 199 YTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLH---LAAQEGHAE--------MV 247

Query: 62  RIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHML 121
            ++    +     N  G  PLH+ A+ GH  V + LI+        +  + +  T  H+ 
Sbjct: 248 ALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK---HGVMVDATTRMGYTPLHVA 304

Query: 122 GM-------------------KNDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANG 160
                                K     + LH+A Q G  D+V +LL  GA P      + 
Sbjct: 305 SHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP---NEVSS 361

Query: 161 SGETPLYLAAARAHKEISAEILQ 183
            G TPL +A    +  +  ++L+
Sbjct: 362 DGTTPLAIAKRLGYISV-TDVLK 383

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.5 bits (153), Expect = 3e-12
 Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 5/78 (6%)

Query: 130 TALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPS 187
           T LH A   G L +VK LL  GA P     +N   ETPL++AA   H E++  +LQ    
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASP---NVSNVKVETPLHMAARAGHTEVAKYLLQNKAK 58

Query: 188 PAHEGPNGKTALHAAVCS 205
              +  + +T LH A   
Sbjct: 59  VNAKAKDDQTPLHCAARI 76

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 8e-10
 Identities = 44/146 (30%), Positives = 58/146 (39%), Gaps = 22/146 (15%)

Query: 74  VNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALH 133
           +  KG  PLHVAA+YG   V E L+E                              T LH
Sbjct: 128 MTKKGFTPLHVAAKYGKVRVAELLLE-----------------RDAHPNAAGKNGLTPLH 170

Query: 134 EAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHE 191
            AV   +LD+VK+LL  G  P   +S   +G TPL++AA +   E++  +LQ   S   E
Sbjct: 171 VAVHHNNLDIVKLLLPRGGSP---HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE 227

Query: 192 GPNGKTALHAAVCSRSCAASRCHKLH 217
              G T LH A               
Sbjct: 228 SVQGVTPLHLAAQEGHAEMVALLLSK 253

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 9e-10
 Identities = 39/176 (22%), Positives = 63/176 (35%), Gaps = 49/176 (27%)

Query: 74  VNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALH 133
            N K + PLH+AAR GH  V + L           +++  +      +  K  ++ T LH
Sbjct: 29  SNVKVETPLHMAARAGHTEVAKYL-----------LQNKAK------VNAKAKDDQTPLH 71

Query: 134 EAVQSGSLDVVKILLGADP--------------------------------AFPYSANGS 161
            A + G  ++VK+LL  +                                 A        
Sbjct: 72  CAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKK 131

Query: 162 GETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLH 217
           G TPL++AA      ++  +L++   P   G NG T LH AV   +    +     
Sbjct: 132 GFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR 187

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 6e-09
 Identities = 36/163 (22%), Positives = 57/163 (34%), Gaps = 23/163 (14%)

Query: 74  VNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEED---- 129
               G  PLHVA  + +  +V+ L+    +       +    T  H+   +N  E     
Sbjct: 161 AGKNGLTPLHVAVHHNNLDIVKLLLP---RGGSPHSPAWNGYTPLHIAAKQNQVEVARSL 217

Query: 130 ---------------TALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAH 174
                          T LH A Q G  ++V +L  +  A     N SG TPL+L A   H
Sbjct: 218 LQYGGSANAESVQGVTPLHLAAQEGHAEMVALL-LSKQANGNLGNKSGLTPLHLVAQEGH 276

Query: 175 KEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLH 217
             ++  +++           G T LH A    +    +    H
Sbjct: 277 VPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH 319

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 2e-06
 Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 22/131 (16%)

Query: 75  NAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHE 134
           + +G  PLH+AA+ GHA +V  L+                   +    + N    T LH 
Sbjct: 228 SVQGVTPLHLAAQEGHAEMVALLLSK-----------------QANGNLGNKSGLTPLHL 270

Query: 135 AVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEG 192
             Q G + V  +L+  G              TPL++A+   + ++   +LQ       + 
Sbjct: 271 VAQEGHVPVADVLIKHGVMVDATTRMG---YTPLHVASHYGNIKLVKFLLQHQADVNAKT 327

Query: 193 PNGKTALHAAV 203
             G + LH A 
Sbjct: 328 KLGYSPLHQAA 338

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 10/37 (27%), Positives = 19/37 (51%)

Query: 74  VNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIE 110
           V++ G  PL +A R G+ +V + L  +  + S   + 
Sbjct: 359 VSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVS 395

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.4 bits (158), Expect = 4e-13
 Identities = 28/138 (20%), Positives = 48/138 (34%), Gaps = 22/138 (15%)

Query: 66  MCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGM-- 123
                  ++   G   L  AA  GH  V++ L++    + +     G  +    +L    
Sbjct: 136 KTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD 195

Query: 124 -------------------KNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGET 164
                              + +   T L  AV+   L +V+ LL  +       +  G+T
Sbjct: 196 SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKT 255

Query: 165 PLYLAAARAHKEISAEIL 182
            L LA     K+I AE+L
Sbjct: 256 ALLLAVELKLKKI-AELL 272

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (130), Expect = 2e-09
 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 4/93 (4%)

Query: 127 EEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQK 184
           E++  L +AVQ+  +D+V+ LL  GA+  F       G TPL+ A   + ++I   +L+ 
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQ--EEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 185 CPSPAHEGPNGKTALHAAVCSRSCAASRCHKLH 217
              P     NG T    A  + S    +     
Sbjct: 62  GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSK 94

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 8e-09
 Identities = 31/153 (20%), Positives = 49/153 (32%), Gaps = 30/153 (19%)

Query: 5   LYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERII 64
           L +AA KG +E    L         +      V   + +          S     VE I 
Sbjct: 152 LMDAAEKGHVEVLKIL---------LDEMGADVNACDNMGRNALIHALLSSDDSDVEAIT 202

Query: 65  EMCPSLLLQVNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHML 121
            +       VN +   G  PL +A    H  +V+ L+E    E +               
Sbjct: 203 HLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN--------------- 247

Query: 122 GMKNDEEDTALHEAVQSGSLDVVKILL--GADP 152
              + +  TAL  AV+     + ++L   GA  
Sbjct: 248 -DTDSDGKTALLLAVELKLKKIAELLCKRGAST 279

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 3e-06
 Identities = 35/167 (20%), Positives = 54/167 (32%), Gaps = 45/167 (26%)

Query: 75  NAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHE 134
           +  G      AA YG    ++ L +       +     +    +           TAL +
Sbjct: 102 DFYGFTAFMEAAVYGKVKALKFLYK-------RGANVNLRRKTKEDQERLRKGGATALMD 154

Query: 135 AVQSGSLDVVKILL---GADP----------------------------------AFPYS 157
           A + G ++V+KILL   GAD                                   A    
Sbjct: 155 AAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV 214

Query: 158 ANGSGETPLYLAAARAHKEISAEILQKCP-SPAHEGPNGKTALHAAV 203
               G+TPL LA  + H  +   +L++          +GKTAL  AV
Sbjct: 215 RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV 261

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 2e-05
 Identities = 33/216 (15%), Positives = 63/216 (29%), Gaps = 39/216 (18%)

Query: 33  KKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAA 92
           + N +L     A   ++ +        V++++E   ++  Q    G  PLH A +     
Sbjct: 4   EDNHLLI---KAVQNEDVD-------LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED 53

Query: 93  VVEALIEIAKQESDQEIESGVESTARHMLGM----------------KNDEEDTALHEAV 136
           +VE L+        ++           + G                  +    TA  EA 
Sbjct: 54  IVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAA 113

Query: 137 QSGSLDVVKILLGADP---------AFPYSANGSGETPLYLAAARAHKEISAEILQKCPS 187
             G +  +K L                       G T L  AA + H E+   +L +  +
Sbjct: 114 VYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA 173

Query: 188 PAHEGPNGKTALHAAVCSRSCAASRCHKLHRSSRFL 223
                 N    +       +  +S    +   +  L
Sbjct: 174 D----VNACDNMGRNALIHALLSSDDSDVEAITHLL 205

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 60.1 bits (144), Expect = 2e-11
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 6/69 (8%)

Query: 119 HMLGMKNDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKE 176
                ++++  T +  A Q G ++VV  L+  GA      + + +  T   LA A  H  
Sbjct: 212 SNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV---EAVDATDHTARQLAQANNHHN 268

Query: 177 ISAEILQKC 185
           I  +I  +C
Sbjct: 269 I-VDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 51.7 bits (122), Expect = 2e-08
 Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 17/93 (18%)

Query: 56  STKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVES 115
           +   V+ ++    S   + +  G  P+ +AA+ G   VV  L           I+ G   
Sbjct: 199 NMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL-----------IQQGAS- 246

Query: 116 TARHMLGMKNDEEDTALHEAVQSGSLDVVKILL 148
                +   +  + TA   A  +   ++V I  
Sbjct: 247 -----VEAVDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 47.0 bits (110), Expect = 8e-07
 Identities = 22/85 (25%), Positives = 36/85 (42%)

Query: 119 HMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEIS 178
                +  +  TALH A Q  ++ +VK L+G   +     +  G+TP+ LAA     E+ 
Sbjct: 178 ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVV 237

Query: 179 AEILQKCPSPAHEGPNGKTALHAAV 203
             ++Q+  S         TA   A 
Sbjct: 238 MYLIQQGASVEAVDATDHTARQLAQ 262

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 40.5 bits (93), Expect = 9e-05
 Identities = 18/103 (17%), Positives = 28/103 (27%), Gaps = 26/103 (25%)

Query: 81  PLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGS 140
            LH  A  G  A+ E +               V                T LH    + S
Sbjct: 5   KLHTEAA-GSYAITEPITR-----------ESVNII-------DPRHNRTVLHWIASNSS 45

Query: 141 LDVVKILLGADP-------AFPYSANGSGETPLYLAAARAHKE 176
            +  + L+  +        A   + +    TPL LA     + 
Sbjct: 46  AEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRR 88

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.8 bits (138), Expect = 1e-10
 Identities = 24/86 (27%), Positives = 32/86 (37%), Gaps = 2/86 (2%)

Query: 121 LGMKNDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEIS 178
            G   ++ DTALH AV       +  LL   A   +    N  G+T L+LAA        
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 179 AEILQKCPSPAHEGPNGKTALHAAVC 204
            ++             G TALH A  
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACR 87

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.6 bits (109), Expect = 1e-06
 Identities = 29/146 (19%), Positives = 46/146 (31%), Gaps = 15/146 (10%)

Query: 74  VNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALH 133
           V   GD  LH+A  + H   ++ L+      +  E            L ++ND   TALH
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLG---FSAGHEY-----------LDLQNDLGQTALH 50

Query: 134 EAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGP 193
            A   G    V+ L  A      +  G      +LA        +  +LQ  PS   +  
Sbjct: 51  LAAILGEASTVEKLYAAGAGVLVAERGGHTAL-HLACRVRAHTCACVLLQPRPSHPRDAS 109

Query: 194 NGKTALHAAVCSRSCAASRCHKLHRS 219
           +            +  A        +
Sbjct: 110 DTYLTQSQDCTPDTSHAPAAVDSQPN 135

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.8 bits (94), Expect = 7e-05
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 6/78 (7%)

Query: 107 QEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGET 164
            E+   +      +   +     T LH AV++ +  V+++LL  GADP    +    G T
Sbjct: 171 AEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP---TARMYGGRT 227

Query: 165 PLYLAAARAHKEISAEIL 182
           PL  A  R +  + A +L
Sbjct: 228 PLGSALLRPNPIL-ARLL 244

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 19/71 (26%)

Query: 83  HVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLD 142
           H+A     A+V+E L++           +G + TA      +     T L  A+   +  
Sbjct: 197 HLAVEAQAASVLELLLK-----------AGADPTA------RMYGGRTPLGSALLRPNPI 239

Query: 143 VVKILL--GAD 151
           + ++L   GA 
Sbjct: 240 LARLLRAHGAP 250

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 58.0 bits (139), Expect = 2e-10
 Identities = 21/159 (13%), Positives = 44/159 (27%), Gaps = 18/159 (11%)

Query: 41  NIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAK---GDAPLHVAARYGHAAVVEAL 97
             +      ++   +   +          L    + K    +    VAA  G ++ ++ L
Sbjct: 50  IFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTL 109

Query: 98  IEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYS 157
             +   +                + +   E   A   A ++G L V+  L    P    +
Sbjct: 110 CLLLTSDEI--------------VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMA 155

Query: 158 -ANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNG 195
                      LAA   H  +   + +  P+ A      
Sbjct: 156 MIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQA 194

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 56.1 bits (134), Expect = 8e-10
 Identities = 20/128 (15%), Positives = 31/128 (24%), Gaps = 11/128 (8%)

Query: 70  LLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEI------ESGVESTARHMLGM 123
            LL               YG   V   +     +  +           GV         +
Sbjct: 215 FLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECL 274

Query: 124 KNDEEDTALHEAVQSGSLDVVKILL--GADPAFPY--SANGSGETPLYLAAARAHKEISA 179
           +       L        LD ++ LL      A     +  G     L LA    ++    
Sbjct: 275 QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGA-C 333

Query: 180 EILQKCPS 187
            +L   PS
Sbjct: 334 ALLLSIPS 341

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 51.8 bits (123), Expect = 2e-08
 Identities = 25/145 (17%), Positives = 41/145 (28%), Gaps = 17/145 (11%)

Query: 73  QVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTAL 132
            + A+      +AA  GH  V+  L E+A                  ++ M   E   A 
Sbjct: 121 VIQAENYQAFRLAAENGHLHVLNRLCELA---------------PTEIMAMIQAENYHAF 165

Query: 133 HEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAH 190
             A ++G L V+  L       A       +     + A  R H  +   +L      A+
Sbjct: 166 RLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAY 225

Query: 191 EGPNGKTALHAAVCSRSCAASRCHK 215
              +        V           K
Sbjct: 226 AEIHEFEYGEKYVNPFIARHVNRLK 250

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 7e-09
 Identities = 44/228 (19%), Positives = 73/228 (32%), Gaps = 55/228 (24%)

Query: 2   NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKN---TVLHV---------------NII 43
           N  +   A  G++E   +  +     SL T       T LH                  +
Sbjct: 4   NLMVCNLAYSGKLEELKESILAD--KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV 61

Query: 44  ASYTQNKEGESVSTKFVERIIEMCPSLLLQ-------VNAKGDAPLHVAARYGHAAVVEA 96
               ++  G S          +     LL        VN  G  PLH AA      +   
Sbjct: 62  PVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVM 121

Query: 97  LIEIAKQESDQEIESGVESTARH-------------------MLGMKNDEEDTALHEAVQ 137
           L+E     ++ + +   E+TA H                      +++ E +T LH A  
Sbjct: 122 LLE---GGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACD 178

Query: 138 SGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQ 183
              ++  K+L+  GA     Y  N   +TPL + A      I   +++
Sbjct: 179 EERVEEAKLLVSQGASI---YIENKEEKTPLQV-AKGGLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 2e-05
 Identities = 35/146 (23%), Positives = 56/146 (38%), Gaps = 18/146 (12%)

Query: 60  VERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARH 119
           ++  I    SL  + +      LH A   GH                             
Sbjct: 19  LKESILADKSLATRTDQDSRTALHWACSAGH-----------------TEIVEFLLQLGV 61

Query: 120 MLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISA 179
            +  K+D   + LH A  +G  ++VK LLG   A   + N +G TPL+ AA++   EI+ 
Sbjct: 62  PVNDKDDAGWSPLHIAASAGRDEIVKALLG-KGAQVNAVNQNGCTPLHYAASKNRHEIAV 120

Query: 180 EILQKCPSPAHEGPNGKTALHAAVCS 205
            +L+   +P  +     TA+H A   
Sbjct: 121 MLLEGGANPDAKDHYEATAMHRAAAK 146

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 1e-04
 Identities = 18/80 (22%), Positives = 31/80 (38%)

Query: 129 DTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSP 188
           +  +     SG L+ +K  + AD +     +    T L+ A +  H EI   +LQ     
Sbjct: 4   NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 63

Query: 189 AHEGPNGKTALHAAVCSRSC 208
             +   G + LH A  +   
Sbjct: 64  NDKDDAGWSPLHIAASAGRD 83

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.0 bits (123), Expect = 2e-08
 Identities = 30/204 (14%), Positives = 65/204 (31%), Gaps = 13/204 (6%)

Query: 2   NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVE 61
           N+ L+   +   +E    L    + GS   +  N      + A  + N           E
Sbjct: 108 NTPLHWLTSIANLELVKHLV---KHGSNRLYGDNMGESCLVKAVKSVNNYDSGT----FE 160

Query: 62  RIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHML 121
            +++     L+  ++     LH          +      AK   D  +   V+   R + 
Sbjct: 161 ALLDYLYPCLILEDSMNRTILHHIIITSG---MTGCSAAAKYYLDILMGWIVKKQNRPIQ 217

Query: 122 GMKNDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISA 179
              N++E +  ++        +++ L           + + +G+T L +AA   +  I  
Sbjct: 218 SGTNEKE-SKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVD 276

Query: 180 EILQKCPSPAHEGPNGKTALHAAV 203
            +L     P     +G   +    
Sbjct: 277 ALLDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.2 bits (121), Expect = 3e-08
 Identities = 31/232 (13%), Positives = 70/232 (30%), Gaps = 39/232 (16%)

Query: 11  KGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSL 70
           K ++E F Q  +  ++  + T   N   + N     +  ++        ++ + +  P+ 
Sbjct: 36  KMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNT 95

Query: 71  LLQVNAK----GDAPLHVAARYGHAAVVEALIE-----------------IAKQESDQEI 109
            L +N      G+ PLH      +  +V+ L++                  A +  +   
Sbjct: 96  QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYD 155

Query: 110 ESGVESTA---RHMLGMKNDEEDTALHEAVQSGSLD------------VVKILLGADPAF 154
               E+        L +++    T LH  + +  +             ++  ++      
Sbjct: 156 SGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRP 215

Query: 155 PYSANGSGETPLYLAAARAHKEISAEILQKCPSPA---HEGPNGKTALHAAV 203
             S     E+            I   +  K         +  NG T L+ A 
Sbjct: 216 IQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAA 267

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 19/123 (15%), Positives = 43/123 (34%)

Query: 95  EALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAF 154
           EA ++       QE+ + + + + +             H +  S   +V           
Sbjct: 40  EAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNL 99

Query: 155 PYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCH 214
               +  G TPL+   + A+ E+   +++   +  +    G++ L  AV S +   S   
Sbjct: 100 NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTF 159

Query: 215 KLH 217
           +  
Sbjct: 160 EAL 162

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 2e-08
 Identities = 18/107 (16%), Positives = 34/107 (31%)

Query: 129 DTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSP 188
           +  LH+A        V+ LL + P+     +  G  PL+ + +    EI++ +L K  + 
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 189 AHEGPNGKTALHAAVCSRSCAASRCHKLHRSSRFLPSPRSCLIPNST 235
             +     +       + S       K        P          T
Sbjct: 61  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVT 107

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 1e-04
 Identities = 10/59 (16%), Positives = 20/59 (33%)

Query: 119 HMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEI 177
             +  ++ +  T L  A+  G  D   +L+    A     +  G     +A     K+ 
Sbjct: 163 SAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKF 221

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.6 bits (88), Expect = 4e-04
 Identities = 11/61 (18%), Positives = 17/61 (27%), Gaps = 16/61 (26%)

Query: 81  PLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGS 140
           PLH A        V+ L+        Q                K+ +    LH +V   +
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQ----------------KDQDGRIPLHWSVSFQA 46

Query: 141 L 141
            
Sbjct: 47  H 47

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 35/216 (16%), Positives = 69/216 (31%), Gaps = 16/216 (7%)

Query: 2   NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHK---KNTVLHV-----NIIASYTQNKEGE 53
           N  L++A  + E     +L   +   SL+  K       LH          +     + E
Sbjct: 1   NYPLHQACMENEFFKVQELLHSK--PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 58

Query: 54  SVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGV 113
           +V+           P  +       +    +  R     + +   +          +   
Sbjct: 59  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 118

Query: 114 ESTAR-----HMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYL 168
           E +         + +K+      LH A   GSL ++++L G   +     +  G TPL+ 
Sbjct: 119 EVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFH 178

Query: 169 AAARAHKEISAEILQKCP-SPAHEGPNGKTALHAAV 203
           A A  H + +  +++K           G  A   A+
Sbjct: 179 ALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL 214

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 49.7 bits (117), Expect = 1e-07
 Identities = 29/141 (20%), Positives = 53/141 (37%), Gaps = 23/141 (16%)

Query: 46  YTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQES 105
               KE E +  +   + +       ++    G   LHVAA  G+  V++ LI+      
Sbjct: 167 EAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA----- 221

Query: 106 DQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGE 163
                       R+ + +K+ +  T LH A   G  +  +IL+    D     + N  G+
Sbjct: 222 ------------RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDM---EAVNKVGQ 266

Query: 164 TPLYLAAARAHKEISAEILQK 184
           T   +A       +  E+ +K
Sbjct: 267 TAFDVADEDILGYL-EELQKK 286

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.2 bits (113), Expect = 3e-07
 Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 1/84 (1%)

Query: 119 HMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEIS 178
                      TALH A   G  +V+K+L           +  G TPL+ AA    +E  
Sbjct: 190 INDVRHAKSGGTALHVAAAKGYTEVLKLL-IQARYDVNIKDYDGWTPLHAAAHWGKEEAC 248

Query: 179 AEILQKCPSPAHEGPNGKTALHAA 202
             +++           G+TA   A
Sbjct: 249 RILVENLCDMEAVNKVGQTAFDVA 272

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.4 bits (111), Expect = 5e-07
 Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 8/116 (6%)

Query: 104 ESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGS 161
            S+ ++E  V    +  +     ++      A  SG  + V  LL  GAD      AN  
Sbjct: 19  GSETDLEPPVVKRKKTKV---KFDDGAVFLAACSSGDTEEVLRLLERGAD---INYANVD 72

Query: 162 GETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLH 217
           G T L+ A    + ++   +++   +       G   LHAA        +      
Sbjct: 73  GLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQ 128

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 2e-06
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 119 HMLGMKNDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKE 176
             +  +     +ALH A   G L +V+ L+  GAD       N   +TPL +A +R   +
Sbjct: 168 ANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADS---SLKNCHNDTPLMVARSRRVID 224

Query: 177 I 177
           I
Sbjct: 225 I 225

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 9e-06
 Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 3/95 (3%)

Query: 126 DEEDTALHEAVQSGSLDVVKILLGADP---AFPYSANGSGETPLYLAAARAHKEISAEIL 182
           ++ DT LH AV  G+L  V  L+             N   +TPL+LA       +   ++
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 60

Query: 183 QKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLH 217
               SP     +G+TA H A   RS    R     
Sbjct: 61  TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDS 95

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 2e-05
 Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 17/87 (19%)

Query: 59  FVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTAR 118
            + +++    + +      G + LH A+  G   +V  L+            SG +S+  
Sbjct: 158 SMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR-----------SGADSSL- 205

Query: 119 HMLGMKNDEEDTALHEAVQSGSLDVVK 145
                KN   DT L  A     +D+++
Sbjct: 206 -----KNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 7e-05
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 78  GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQ 137
           GD PLH+A   G+   V  L+       +   + G E      L + N+   T LH AV 
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLV-------NLFQQGGRE------LDIYNNLRQTPLHLAVI 49

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.5 bits (93), Expect = 7e-05
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 6/66 (9%)

Query: 119 HMLGMKNDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKE 176
                ++D+++T L  A + GS +  K LL   A+       +     P  +A+ R H +
Sbjct: 147 ANRDAQDDKDETPLFLAAREGSYEASKALLDNFANR---EITDHMDRLPRDVASERLHHD 203

Query: 177 ISAEIL 182
           I   +L
Sbjct: 204 I-VRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.1 bits (84), Expect = 0.001
 Identities = 9/42 (21%), Positives = 20/42 (47%)

Query: 56 STKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEAL 97
          + + +  ++     L   ++  G+  LH+AAR+  A   + L
Sbjct: 1  TAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRL 42

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.0 bits (92), Expect = 7e-05
 Identities = 31/131 (23%), Positives = 49/131 (37%), Gaps = 12/131 (9%)

Query: 76  AKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEA 135
           A   A LH          +  L++            GV+ T +  L   ++ ++TALH A
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQA--------YADGVDLTEKIPLANGHEPDETALHLA 52

Query: 136 VQS---GSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEG 192
           V+S    SL +V   L  +        G G T L+      + E    +L+   S     
Sbjct: 53  VRSVDRTSLHIVD-FLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIAN 111

Query: 193 PNGKTALHAAV 203
            +G+T L  A 
Sbjct: 112 ESGETPLDIAK 122

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 16/135 (11%), Positives = 41/135 (30%), Gaps = 21/135 (15%)

Query: 35  NTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAAR---YGHA 91
              LH   +    + ++   +   + + +       L   +   +  LH+A R       
Sbjct: 4   AAKLH--SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL 61

Query: 92  AVVEALIE----------------IAKQESDQEIESGVESTARHMLGMKNDEEDTALHEA 135
            +V+ L++                     +D      +    +  + + N+  +T L  A
Sbjct: 62  HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA 121

Query: 136 VQSGSLDVVKILLGA 150
            +       ++L  A
Sbjct: 122 KRLKHEHCEELLTQA 136

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 1e-04
 Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 1/97 (1%)

Query: 100 IAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSAN 159
           +A       I   + S    +   +     TALH AV   + D+V +LL    A      
Sbjct: 117 LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG-ADVNRVT 175

Query: 160 GSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGK 196
             G +P  L   R    I  ++ Q         P  +
Sbjct: 176 YQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESE 212

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 2e-04
 Identities = 29/121 (23%), Positives = 42/121 (34%), Gaps = 3/121 (2%)

Query: 129 DTALHEAVQSGSLDVVKIL---LGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKC 185
           D+ LH A+      +   +   +  D AF    N   +TPL+LA      EI+  +L   
Sbjct: 3   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 62

Query: 186 PSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSSRFLPSPRSCLIPNSTTTSLFALIPS 245
             P      G T LH A      A+        ++  L S       N  T    A I  
Sbjct: 63  CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 122

Query: 246 H 246
           +
Sbjct: 123 Y 123

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 3e-04
 Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 162 GETPLYLAAARAHKEISAEILQKCPS----PAHEGPNGKTALHAAVCSRSCAASRCHKLH 217
           G++ L+LA     K ++ E++++          +    +T LH AV +     +      
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 61

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 8e-04
 Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 13/60 (21%)

Query: 78  GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQ 137
           GD+ LH+A  +   A+   +I                      L  +N+ + T LH AV 
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQV-------KGDLAF------LNFQNNLQQTPLHLAVI 48

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (83), Expect = 0.001
 Identities = 32/194 (16%), Positives = 57/194 (29%), Gaps = 35/194 (18%)

Query: 35  NTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAK---GDAPLHVAARYGHA 91
           ++ LH   +A   + K            +I      L  +N +      PLH+A      
Sbjct: 3   DSFLH---LAIIHEEKA-------LTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQP 52

Query: 92  AVVEALIEIA----------------------KQESDQEIESGVESTARHMLGMKNDEED 129
            + EAL+                                 +S        +L   N    
Sbjct: 53  EIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGH 112

Query: 130 TALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPA 189
           T LH A   G L +V++L+            +G T L+LA    + ++ + +L+      
Sbjct: 113 TCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN 172

Query: 190 HEGPNGKTALHAAV 203
                G +      
Sbjct: 173 RVTYQGYSPYQLTW 186

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 6e-04
 Identities = 10/34 (29%), Positives = 13/34 (38%)

Query: 66  MCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIE 99
              S +   N KGD    +A  YG   VV  +  
Sbjct: 121 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 154

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 7e-04
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 119 HMLGMKNDEEDTALHEAVQSGSLDVVKILL 148
             +G +N + DTA   A   G  +VV ++ 
Sbjct: 124 SNVGHRNHKGDTACDLARLYGRNEVVSLMQ 153

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (78), Expect = 0.004
 Identities = 6/25 (24%), Positives = 9/25 (36%), Gaps = 2/25 (8%)

Query: 130 TALHEAVQSGSLDVVKILL--GADP 152
             L  A   G L+ +  LL    + 
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNV 27

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.0 bits (81), Expect = 0.002
 Identities = 19/137 (13%), Positives = 37/137 (27%), Gaps = 14/137 (10%)

Query: 81  PLHVAARYGHAAVVEALIE--------------IAKQESDQEIESGVESTARHMLGMKND 126
            L  AAR G    V  L+               +          +        +      
Sbjct: 5   KLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART 64

Query: 127 EEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCP 186
           + D        S     +  +L    A   + +    T L+ A    H+E+   +++   
Sbjct: 65  KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA 124

Query: 187 SPAHEGPNGKTALHAAV 203
               +    KTA   ++
Sbjct: 125 DVHTQSKFCKTAFDISI 141

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (79), Expect = 0.003
 Identities = 8/25 (32%), Positives = 14/25 (56%)

Query: 75  NAKGDAPLHVAARYGHAAVVEALIE 99
           +A+G  PL +A + G   +V+ L  
Sbjct: 130 DARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (79), Expect = 0.003
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 121 LGMKNDEEDTALHEAVQSGSLDVVKILLG 149
           L  ++    T L  A+Q G+ D+V IL G
Sbjct: 126 LHRRDARGLTPLELALQRGAQDLVDILQG 154

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	264
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.97
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.97
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.96
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.96
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.96
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.96
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.96
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.95
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.95
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.95
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.94
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.94
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.94
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.93
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.93
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.92
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.92
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.9
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.9
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.9
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.89
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.89
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.88
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.87

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-38  Score=251.81  Aligned_cols=208  Identities=20%  Similarity=0.214  Sum_probs=180.0

Q ss_pred             CcHHHHHHHcCCchHHhhhhh---hcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCC
Q 047844            2 NSDLYEAAAKGEIEPFNQLAI---DRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKG   78 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~---~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g   78 (264)
                      +||||+||..|+.+++++|++   +....+..+..|.||||+|+  ..|+        .+++++|++.+.+ ++..|.+|
T Consensus        10 ~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~--~~g~--------~~iv~~Ll~~ga~-i~~~d~~g   78 (255)
T d1oy3d_          10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAA--ILGE--------ASTVEKLYAAGAG-VLVAERGG   78 (255)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHH--HHTC--------HHHHHHHHHTTCC-SSCCCTTS
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHH--hhcc--------ccccccccccccc-cccccccc
Confidence            699999999999999999998   34445568899999999999  9999        9999999999998 78999999


Q ss_pred             ChHHHHHHHhCCHHHHHHHHHHhhhcchhhh----------h--------------------hchhhHHHHHhcCCCCCC
Q 047844           79 DAPLHVAARYGHAAVVEALIEIAKQESDQEI----------E--------------------SGVESTARHMLGMKNDEE  128 (264)
Q Consensus        79 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~----------~--------------------~~~~~~~~~~l~~~~~~g  128 (264)
                      .||||+|+..++.+++++|++.+........          .                    ..........++.++..|
T Consensus        79 ~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g  158 (255)
T d1oy3d_          79 HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDG  158 (255)
T ss_dssp             CCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTS
T ss_pred             chhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccC
Confidence            9999999999999999999876543221100          0                    000001123356788999


Q ss_pred             CChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCCh
Q 047844          129 DTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSC  208 (264)
Q Consensus       129 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~  208 (264)
                      .||||+|+..|+.+++++|++.+++.....+..|.||||+|++.++.+++++|+++|++++.+|..|.||||+|+.+++.
T Consensus       159 ~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~  238 (255)
T d1oy3d_         159 HTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNP  238 (255)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCH
T ss_pred             cccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCH
Confidence            99999999999999999999999997667788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhCC
Q 047844          209 AASRCHKLHRSS  220 (264)
Q Consensus       209 ~~~~~l~~~~~~  220 (264)
                      +++++|+.+|++
T Consensus       239 ~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         239 ILARLLRAHGAP  250 (255)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHHHcCCC
Confidence            999999999975

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-35  Score=228.61  Aligned_cols=193  Identities=22%  Similarity=0.272  Sum_probs=166.5

Q ss_pred             CcHHHHHHHcCCchHHhhhhh-hcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCCh
Q 047844            2 NSDLYEAAAKGEIEPFNQLAI-DRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDA   80 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~-~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t   80 (264)
                      |+.|+.+|..|+++.++.+++ ++...+..|..|+||||+|+  ..|+        .++++++++.+.. ....+..+.+
T Consensus         4 ~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa--~~g~--------~e~~~~l~~~~~~-~~~~~~~~~~   72 (223)
T d1uoha_           4 NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWAC--SAGH--------TEIVEFLLQLGVP-VNDKDDAGWS   72 (223)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHH--HHTC--------HHHHHHHHHHTCC-SCCCCTTCCC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHH--Hhhh--------hcccccccccccc-cccccccccc
Confidence            578899999999999988887 56666668999999999999  9999        9999999998877 5566777889


Q ss_pred             HHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCC
Q 047844           81 PLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANG  160 (264)
Q Consensus        81 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  160 (264)
                      +++.++..++.+++++|++++.+++                 .++..|.||||+|+..|+.+++++|+++|+++ +..+.
T Consensus        73 ~~~~~~~~~~~~i~~~Ll~~~~d~~-----------------~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~-~~~~~  134 (223)
T d1uoha_          73 PLHIAASAGRDEIVKALLGKGAQVN-----------------AVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDH  134 (223)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTT-----------------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT
T ss_pred             cccccccccccchhHHHhccCceeE-----------------eeCCCCCchhhHHHHcCCHHHHHHHHHCCCCC-CCcCC
Confidence            9999999999999999998887643                 37888899999999999999999999988885 67888


Q ss_pred             CCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhCCCCC
Q 047844          161 SGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSSRFL  223 (264)
Q Consensus       161 ~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~~~  223 (264)
                      .|.||||+|+..++.+++++|...+.+++.+|..|+||||+|+..++.+++++|+..++....
T Consensus       135 ~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~  197 (223)
T d1uoha_         135 YEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYI  197 (223)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCC
T ss_pred             CCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCC
Confidence            889999999999999999999888999999999999999999999999999998888775443

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-33  Score=218.99  Aligned_cols=185  Identities=23%  Similarity=0.204  Sum_probs=171.5

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChH
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAP   81 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~   81 (264)
                      +||||+||..|+.+++++|++........+..+.++++.++  ..|+        .+++++|++.+.+ ++..|..|+||
T Consensus        38 ~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~--------~~i~~~Ll~~~~d-~~~~d~~g~tp  106 (223)
T d1uoha_          38 RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA--SAGR--------DEIVKALLGKGAQ-VNAVNQNGCTP  106 (223)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHH--HHTC--------HHHHHHHHHTTCC-TTCCCTTCCCH
T ss_pred             CCHHHHHHHhhhhcccccccccccccccccccccccccccc--cccc--------cchhHHHhccCce-eEeeCCCCCch
Confidence            58999999999999999999955554457888999999999  9999        9999999999988 78999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCC
Q 047844           82 LHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGS  161 (264)
Q Consensus        82 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~  161 (264)
                      ||+|+..|+.+++++|+++|++++.                 ++..|.||||+|+..++.+++++|++.+.++ +..|..
T Consensus       107 L~~A~~~~~~e~~~~Ll~~g~d~~~-----------------~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i-~~~d~~  168 (223)
T d1uoha_         107 LHYAASKNRHEIAVMLLEGGANPDA-----------------KDHYEATAMHRAAAKGNLKMIHILLYYKAST-NIQDTE  168 (223)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTC-----------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTT
T ss_pred             hhHHHHcCCHHHHHHHHHCCCCCCC-----------------cCCCCCccchhhhhcCCcchhhhhcccccee-eeccCC
Confidence            9999999999999999999987544                 8899999999999999999999999999995 789999


Q ss_pred             CCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHh
Q 047844          162 GETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKL  216 (264)
Q Consensus       162 g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~  216 (264)
                      |+||||.|+..|+.+++++|+++|++++.+|.+|+||||+| ..|+.+++++|++
T Consensus       169 g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         169 GNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             CCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            99999999999999999999999999999999999999998 4689999988864

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-34  Score=224.26  Aligned_cols=196  Identities=19%  Similarity=0.162  Sum_probs=173.0

Q ss_pred             CcHHHHHHHcCCchHHhhhhh----hcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCC
Q 047844            2 NSDLYEAAAKGEIEPFNQLAI----DRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAK   77 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~----~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~   77 (264)
                      +||||+|+..|+.++++.+++    ++...+..|.+|.||||+|+  ..|+        .+++++|++.+.+ ++..|..
T Consensus         3 ~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~--~~~~--------~~iv~~L~~~g~d-~~~~d~~   71 (221)
T d1iknd_           3 DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAV--ITNQ--------PEIAEALLGAGCD-PELRDFR   71 (221)
T ss_dssp             CCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHH--HTTC--------HHHHHCCCSCCCC-SCCCCTT
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCccccccc--cccc--------ccccccccccccc-ccccccc
Confidence            699999999999877776665    44445558999999999999  9999        9999999999998 7889999


Q ss_pred             CChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCC
Q 047844           78 GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYS  157 (264)
Q Consensus        78 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~  157 (264)
                      |.|||++|+..|+.++++.++..+.......           ........|.||||.|+..++.+++++|+..|..+...
T Consensus        72 g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~-----------~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~  140 (221)
T d1iknd_          72 GNTPLHLACEQGCLASVGVLTQSCTTPHLHS-----------ILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ  140 (221)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHSTTTTSSSC-----------GGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCC
T ss_pred             cccccccccccccccccchhhhhcccccccc-----------cccccccccchhhhHHhhcCChhheeeecccCcccccc
Confidence            9999999999999999999999876543311           12335667899999999999999999999999987666


Q ss_pred             CCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhC
Q 047844          158 ANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRS  219 (264)
Q Consensus       158 ~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~  219 (264)
                      .+.+|+||||+|++.|+.+++++|+++|+|++.+|..|+||||+|+..++.+++++|.....
T Consensus       141 ~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~  202 (221)
T d1iknd_         141 EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL  202 (221)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSC
T ss_pred             cccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            67889999999999999999999999999999999999999999999999999999987754

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-33  Score=219.34  Aligned_cols=205  Identities=18%  Similarity=0.206  Sum_probs=160.8

Q ss_pred             CcHHHHHHHcCCchHHhhhhh-hcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCcc--ceecCCCC
Q 047844            2 NSDLYEAAAKGEIEPFNQLAI-DRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSL--LLQVNAKG   78 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~-~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~--~~~~~~~g   78 (264)
                      |+|||+||..|+.+.++.|++ .+...+.+|.+|.||||+|+  ..|+        .+++++|++.++++  .+..+..|
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~--~~g~--------~~iv~~Ll~~ga~~~~~~~~~~~~   70 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSV--SFQA--------HEITSFLLSKMENVNLDDYPDDSG   70 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHH--HTTC--------HHHHHHHHTTCTTCCGGGCCCTTS
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHH--HcCC--------ccccchhhhhhccccccccccccc
Confidence            799999999999999999998 45566668999999999999  9999        99999999998763  34567889


Q ss_pred             ChHHHHHHHhCCHHHHHHHHHHhhhcchhhh------------hhchhhHHHHH------hcCCCCCCCChhhHHHhcCC
Q 047844           79 DAPLHVAARYGHAAVVEALIEIAKQESDQEI------------ESGVESTARHM------LGMKNDEEDTALHEAVQSGS  140 (264)
Q Consensus        79 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~------------~~~~~~~~~~~------l~~~~~~g~t~L~~A~~~~~  140 (264)
                      .+|+++++..+..++++.++..+........            ..+.......+      .+.++..|.||||+|+..|+
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~  150 (229)
T d1ixva_          71 WTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGS  150 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccc
Confidence            9999999999999999999888765443211            01111111212      23466778888888888888


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHh-hCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhC
Q 047844          141 LDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQ-KCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRS  219 (264)
Q Consensus       141 ~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~  219 (264)
                      .+++++|++.+....+.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+.   .+++++|+.+++
T Consensus       151 ~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~---~~~~~~Ll~~g~  227 (229)
T d1ixva_         151 LKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNNVV  227 (229)
T ss_dssp             HHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC---HHHHHHHHHHCC
T ss_pred             ccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh---HHHHHHHHHcCC
Confidence            8888888887765457778888888888888888888888885 588888888888888888874   467788877664

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=6.3e-33  Score=220.80  Aligned_cols=203  Identities=19%  Similarity=0.199  Sum_probs=167.2

Q ss_pred             CcHHHHHHHcCCchHHhhhhhh--------cccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCcccee
Q 047844            2 NSDLYEAAAKGEIEPFNQLAID--------RQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQ   73 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~--------~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~   73 (264)
                      .||||+||..|+.++++.|+..        +-..+.+|.+|.||||+|+  ..|+        .+++++|++.|++ ++.
T Consensus        34 ~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~--~~g~--------~~iv~~Ll~~Gad-~n~  102 (277)
T d2fo1e1          34 RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAV--LARR--------RRLVAYLMKAGAD-PTI  102 (277)
T ss_dssp             CCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHH--HHTC--------HHHHHHHHHTTCC-SCC
T ss_pred             ccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecccc--cccc--------ccccccccccccc-ccc
Confidence            4899999999999999999761        1223448999999999999  9999        9999999999999 888


Q ss_pred             cCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchh---hhh-----------hchh--hHH--------------HHHhcC
Q 047844           74 VNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQ---EIE-----------SGVE--STA--------------RHMLGM  123 (264)
Q Consensus        74 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~---~~~-----------~~~~--~~~--------------~~~l~~  123 (264)
                      .+..|.|||++|+..++.++++++...+......   ...           ....  ...              ....+.
T Consensus       103 ~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (277)
T d2fo1e1         103 YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDS  182 (277)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSS
T ss_pred             ccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccc
Confidence            9999999999999999999999887654322111   000           0000  000              111245


Q ss_pred             CCCCCCChhhHHHhcCCHHHHHHHhc-CCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHH
Q 047844          124 KNDEEDTALHEAVQSGSLDVVKILLG-ADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAA  202 (264)
Q Consensus       124 ~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A  202 (264)
                      .+..|.||||+++..++.+++++++. .+.+ .+.+|..|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|
T Consensus       183 ~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~-~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A  261 (277)
T d2fo1e1         183 EKYKGRTALHYAAQVSNMPIVKYLVGEKGSN-KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLA  261 (277)
T ss_dssp             SSCCCCCTHHHHHSSCCHHHHHHHHHHSCCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHH
T ss_pred             cccCCCCcccccccccccccccccccccccc-ccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHH
Confidence            66789999999999999999998775 5555 578899999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHh
Q 047844          203 VCSRSCAASRCHKL  216 (264)
Q Consensus       203 ~~~~~~~~~~~l~~  216 (264)
                      +.+|+.+++++|..
T Consensus       262 ~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         262 QANNHHNIVDIFDR  275 (277)
T ss_dssp             HHTTCHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHH
Confidence            99999999998864

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=2.4e-32  Score=219.11  Aligned_cols=199  Identities=22%  Similarity=0.169  Sum_probs=166.1

Q ss_pred             cHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHH
Q 047844            3 SDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPL   82 (264)
Q Consensus         3 ~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L   82 (264)
                      |+|+.||..|++++|++|++.+-..+..|.+|.||||+|+  ..|+        .+++++|++.+.+ ....+..+.+||
T Consensus        42 t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~--~~g~--------~eiv~~Ll~~~~~-~~~~~~~~~~~L  110 (291)
T d1s70b_          42 AVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQAC--IDDN--------VDMVKFLVENGAN-INQPDNEGWIPL  110 (291)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHH--HTTC--------HHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHH--hcCC--------ceeeeeecccccc-cccccccccccc
Confidence            7899999999999999999944334458999999999999  9999        9999999999988 677888999999


Q ss_pred             HHHHHhCCHHHHHHHHHHhhhcchhhhhh----------chhhHHHH---------------------------------
Q 047844           83 HVAARYGHAAVVEALIEIAKQESDQEIES----------GVESTARH---------------------------------  119 (264)
Q Consensus        83 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~----------~~~~~~~~---------------------------------  119 (264)
                      ++|+..++.++++.|++.|......+...          +.......                                 
T Consensus       111 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (291)
T d1s70b_         111 HAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHI  190 (291)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             cccccccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhccccc
Confidence            99999999999999999886554332100          00000000                                 


Q ss_pred             HhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHH
Q 047844          120 MLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTAL  199 (264)
Q Consensus       120 ~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl  199 (264)
                      .....+..|.||||.|+..|+.+++++|++.|+++ +.++..|+||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus       191 ~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~di-n~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL  269 (291)
T d1s70b_         191 NDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAF  269 (291)
T ss_dssp             CCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTT
T ss_pred             ccccccCCCCChhhHHHHcCChhhhcccccceecc-cccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence            01346678999999999999999999999999996 78899999999999999999999999999999999999999999


Q ss_pred             hHHHhcCChHHHHHHHhh
Q 047844          200 HAAVCSRSCAASRCHKLH  217 (264)
Q Consensus       200 ~~A~~~~~~~~~~~l~~~  217 (264)
                      |+|++    +++++|...
T Consensus       270 ~~A~e----~~~~~L~~~  283 (291)
T d1s70b_         270 DVADE----DILGYLEEL  283 (291)
T ss_dssp             TSCCS----GGGHHHHHH
T ss_pred             HHHHH----HHHHHHHHH
Confidence            99975    456555443

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.5e-30  Score=199.70  Aligned_cols=199  Identities=18%  Similarity=0.217  Sum_probs=165.8

Q ss_pred             CcHHHHHHHcCCchHHhhhhh----hcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCC
Q 047844            2 NSDLYEAAAKGEIEPFNQLAI----DRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAK   77 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~----~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~   77 (264)
                      +||||+||..|+.++++.|++    .+...+..|..|+||||+|+  ..|+        .+++++|++.+.. .+..+..
T Consensus         4 ~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~--~~~~--------~~iv~~Ll~~ga~-~~~~~~~   72 (228)
T d1k1aa_           4 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAV--ITTL--------PSVVRLLVTAGAS-PMALDRH   72 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHH--HTTC--------HHHHHHHHHTTCC-TTCCCTT
T ss_pred             ccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehh--cccc--------ccccccccccccc-ccccccc
Confidence            699999999999999999986    22233448999999999999  9999        9999999999988 7788899


Q ss_pred             CChHHHHHHHhCCHHHHHHHHHHhhhcchhhhh--------------hchhhHHHHH-------hcCCCCCCCChhhHHH
Q 047844           78 GDAPLHVAARYGHAAVVEALIEIAKQESDQEIE--------------SGVESTARHM-------LGMKNDEEDTALHEAV  136 (264)
Q Consensus        78 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~--------------~~~~~~~~~~-------l~~~~~~g~t~L~~A~  136 (264)
                      |.++++.|...++.++++.+.............              .........+       .......+.++++.|+
T Consensus        73 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~  152 (228)
T d1k1aa_          73 GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAV  152 (228)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHH
T ss_pred             cccccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHH
Confidence            999999999999999999887765433221110              0000111111       1235567899999999


Q ss_pred             hcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHH
Q 047844          137 QSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASR  212 (264)
Q Consensus       137 ~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~  212 (264)
                      ..+...+++++++.|... +.+|..|.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+.+|+.+++|
T Consensus       153 ~~~~~~~~~~~~~~~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         153 ENNSLSMVQLLLQHGANV-NAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HTTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             Hhhhhhhhhhhhhhcccc-ccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            999999999999999885 688999999999999999999999999999999999999999999999999998885

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.5e-29  Score=197.65  Aligned_cols=164  Identities=24%  Similarity=0.271  Sum_probs=145.8

Q ss_pred             cCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCc--cceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchh
Q 047844           30 VTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPS--LLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQ  107 (264)
Q Consensus        30 ~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~--~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~  107 (264)
                      .+++|.||||+||  ..|+        .+++++|++.+++  .++..|..|.||||+|+..|+.+++++|++.|++++. 
T Consensus         5 i~~~G~t~Lh~A~--~~~~--------~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~-   73 (255)
T d1oy3d_           5 VTEDGDTALHLAV--IHQH--------EPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLV-   73 (255)
T ss_dssp             CCTTCCCHHHHHH--HTTC--------HHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC-
T ss_pred             CCcCCCCHHHHHH--HcCC--------HHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccc-
Confidence            6899999999999  9999        9999999998754  4667889999999999999999999999999988554 


Q ss_pred             hhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCC---------------------------------
Q 047844          108 EIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAF---------------------------------  154 (264)
Q Consensus       108 ~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~---------------------------------  154 (264)
                                      ++..|.||||+|+..++.+++++|++.+...                                 
T Consensus        74 ----------------~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (255)
T d1oy3d_          74 ----------------AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPE  137 (255)
T ss_dssp             ----------------CCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------
T ss_pred             ----------------cccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchh
Confidence                            8999999999999999999999998643221                                 


Q ss_pred             -------------CCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcC-CCCCccHHhHHHhcCChHHHHHHHhhhCC
Q 047844          155 -------------PYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHE-GPNGKTALHAAVCSRSCAASRCHKLHRSS  220 (264)
Q Consensus       155 -------------~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~-~~~g~tpl~~A~~~~~~~~~~~l~~~~~~  220 (264)
                                   .+.+|..|.||||+|+..++.+++++|++.+++.+.. +..|.||||+|+..++.+++++|+.+++.
T Consensus       138 ~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gad  217 (255)
T d1oy3d_         138 NEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD  217 (255)
T ss_dssp             ------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHHHhhhcCcccccccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCC
Confidence                         1346778999999999999999999999999988864 67899999999999999999999998754

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.4e-29  Score=199.16  Aligned_cols=209  Identities=18%  Similarity=0.161  Sum_probs=141.2

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccc-cCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCC----
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSL-VTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNA----   76 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~-~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~----   76 (264)
                      +|+||.|+..|++++|++|++.+...+. .+..|+||||+|+  ..|+        .+++++|++.+.. ....+.    
T Consensus         6 ~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~--~~~~--------~eiv~~L~~~~~~-~~~~~~~~~~   74 (285)
T d1wdya_           6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAV--QMSR--------EDIVELLLRHGAD-PVLRKKNGAT   74 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHH--HTTC--------HHHHHHHHHTTCC-TTCCCTTCCC
T ss_pred             cHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHH--HcCC--------HHHhhhhcccccc-ccccccccch
Confidence            4799999999999999999994322222 4567999999999  9999        9999999986554 222222    


Q ss_pred             -----------------------------CCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhc---------------
Q 047844           77 -----------------------------KGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESG---------------  112 (264)
Q Consensus        77 -----------------------------~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~---------------  112 (264)
                                                   .+.+++++|+..++...++.++..............               
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~  154 (285)
T d1wdya_          75 PFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMD  154 (285)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHH
T ss_pred             hhHHHhhcCCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHH
Confidence                                         233444444444444444444433222211100000               


Q ss_pred             -----hhhHHHHH-------hcCCCCCCCChhhHHHhc----CCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHH
Q 047844          113 -----VESTARHM-------LGMKNDEEDTALHEAVQS----GSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKE  176 (264)
Q Consensus       113 -----~~~~~~~~-------l~~~~~~g~t~L~~A~~~----~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~  176 (264)
                           ....+..+       ++..+..|.++...+...    +..+++++|+++|+++ +.++..|.||||.|+..|+.+
T Consensus       155 A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~-n~~~~~g~t~L~~a~~~~~~~  233 (285)
T d1wdya_         155 AAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLG  233 (285)
T ss_dssp             HHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-SCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCC-CccCCCCCCccchhhhcCcHH
Confidence                 00011111       223444455544443222    2345666666677774 677889999999999999999


Q ss_pred             HHHHHHh-hCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhCCCC
Q 047844          177 ISAEILQ-KCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSSRF  222 (264)
Q Consensus       177 ~~~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~~  222 (264)
                      ++++|++ .|++++.+|.+|.||||+|+++++.+++++|+++|+...
T Consensus       234 ~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n  280 (285)
T d1wdya_         234 LVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD  280 (285)
T ss_dssp             HHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSC
T ss_pred             HHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            9999997 489999999999999999999999999999999997643

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.2e-29  Score=207.93  Aligned_cols=206  Identities=23%  Similarity=0.235  Sum_probs=166.8

Q ss_pred             cHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHH
Q 047844            3 SDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPL   82 (264)
Q Consensus         3 ~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L   82 (264)
                      ||||+||..|++++|++|++.+...+..|..|.||||+|+  ..|+        .+++++|+++|.+ ++..+.+|+|||
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~--~~g~--------~~iv~~Ll~~gad-i~~~~~~g~t~L   70 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAA--RAGH--------TEVAKYLLQNKAK-VNAKAKDDQTPL   70 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHH--HHTC--------HHHHHHHHHHTCC-SSCCCTTSCCHH
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH--HcCC--------HHHHHHHHHCcCC-CCCCCCCCCCHH
Confidence            8999999999999999999954444558999999999999  9999        9999999999998 889999999999


Q ss_pred             HHHHHhCCHHHHHHHHHHhhhcchhhhhhchhh----------------HHHHHhcCCCCCCCChhhHHHhcCCHHHHHH
Q 047844           83 HVAARYGHAAVVEALIEIAKQESDQEIESGVES----------------TARHMLGMKNDEEDTALHEAVQSGSLDVVKI  146 (264)
Q Consensus        83 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~  146 (264)
                      |+|+..|+.+++++|+..+..............                .........+..+.++++.|+..++.+++++
T Consensus        71 ~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~  150 (408)
T d1n11a_          71 HCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAEL  150 (408)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHH
Confidence            999999999999999988765433221111000                0111234566778888888888888888888


Q ss_pred             HhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhCC
Q 047844          147 LLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSS  220 (264)
Q Consensus       147 Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~  220 (264)
                      |+++|.++ +..+..|.+|||.|+..++.+++++|+++|++++..+..|.||++.+......+....+......
T Consensus       151 ll~~~~~~-~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~  223 (408)
T d1n11a_         151 LLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS  223 (408)
T ss_dssp             HHHTTCCT-TCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHcCCCC-CcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhcccc
Confidence            88888885 67778888888888888888888888888888888888888888888888887777777655443

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=1.6e-28  Score=187.26  Aligned_cols=189  Identities=18%  Similarity=0.219  Sum_probs=152.8

Q ss_pred             chHHhhhhhhcccccc-cCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHH
Q 047844           14 IEPFNQLAIDRQLGSL-VTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAA   92 (264)
Q Consensus        14 ~~~~~~l~~~~~~~~~-~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~   92 (264)
                      -|+|+.|++.+...+. .|.+|.||||+||  +.|+        .+++++|++.+.+ ++..+..+.++++.++..++..
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~--~~g~--------~e~v~~Ll~~g~~-~n~~~~~~~~~~~~~~~~~~~~   70 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAA--RFAR--------ADAAKRLLDAGAD-ANSQDNTGRTPLHAAVAADAMG   70 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHH--HTTC--------HHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHH--HcCC--------HHHHHHHHhhccc-cccccccccccccccccccccc
Confidence            3788999983222222 5788999999999  9999        9999999999888 7888889999999999988887


Q ss_pred             HHHHHHHHhhhcchhhhh-----------hchhhHHH------HHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCC
Q 047844           93 VVEALIEIAKQESDQEIE-----------SGVESTAR------HMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFP  155 (264)
Q Consensus        93 ~v~~Ll~~~~~~~~~~~~-----------~~~~~~~~------~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~  155 (264)
                      ..................           ........      ..++.++..|.|||+.++..+..++++.+++.+.++ 
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~-  149 (209)
T d1ot8a_          71 VFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANR-  149 (209)
T ss_dssp             HHHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT-
T ss_pred             cccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccc-
Confidence            766665543322221110           00011111      123568889999999999999999999999999985 


Q ss_pred             CCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHH
Q 047844          156 YSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCH  214 (264)
Q Consensus       156 ~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l  214 (264)
                      +..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+++|+.++|++|
T Consensus       150 ~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         150 DAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cccccccccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            78899999999999999999999999999999999999999999999999999999986

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.8e-29  Score=181.71  Aligned_cols=153  Identities=18%  Similarity=0.220  Sum_probs=143.6

Q ss_pred             chhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhh
Q 047844           36 TVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVES  115 (264)
Q Consensus        36 t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~  115 (264)
                      ++||+||  ..|+        .+++++|++++.+ ++.+|..|.||||+|+ .|+.+++++|++.|+++..         
T Consensus         3 ~~Lh~Aa--~~g~--------~~~v~~Ll~~g~d-~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~---------   61 (156)
T d1ihba_           3 NELASAA--ARGD--------LEQLTSLLQNNVN-VNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDL---------   61 (156)
T ss_dssp             HHHHHHH--HHTC--------HHHHHHHTTSCCC-TTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTC---------
T ss_pred             HHHHHHH--HcCC--------HHHHHHHHHCCCC-cCccCCcccccccccc-ccccccccccccccccccc---------
Confidence            7999999  9999        9999999999999 7899999999999886 7899999999999988544         


Q ss_pred             HHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCC-CCCcCCCC
Q 047844          116 TARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCP-SPAHEGPN  194 (264)
Q Consensus       116 ~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga-~~~~~~~~  194 (264)
                              ++..|.++++.++..+..+.++.|++.+.+. +..+..|.+|+|+|+..++.+++++|+++++ +.+.+|..
T Consensus        62 --------~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~  132 (156)
T d1ihba_          62 --------KDRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHK  132 (156)
T ss_dssp             --------CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTT
T ss_pred             --------ccccCcccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccCCC
Confidence                    8889999999999999999999999999985 7889999999999999999999999999986 88999999


Q ss_pred             CccHHhHHHhcCChHHHHHHHhhh
Q 047844          195 GKTALHAAVCSRSCAASRCHKLHR  218 (264)
Q Consensus       195 g~tpl~~A~~~~~~~~~~~l~~~~  218 (264)
                      |.||||+|+..++.+++++|+++|
T Consensus       133 g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         133 GDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhcC
Confidence            999999999999999999998764

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9.3e-29  Score=180.27  Aligned_cols=152  Identities=18%  Similarity=0.249  Sum_probs=139.6

Q ss_pred             chhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhh
Q 047844           36 TVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVES  115 (264)
Q Consensus        36 t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~  115 (264)
                      +.|+.||  ..|+        .+++++|++.+...++..|..|+||||+|+ .|+.+++++|++.+.+++.         
T Consensus         4 ~~L~~Aa--~~g~--------~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~---------   63 (156)
T d1bd8a_           4 DRLSGAA--ARGD--------VQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNV---------   63 (156)
T ss_dssp             HHHHHHH--HHTC--------HHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTC---------
T ss_pred             HHHHHHH--HcCC--------HHHHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccccccccccc---------
Confidence            4599999  9999        999999999765558899999999999987 4889999999999887544         


Q ss_pred             HHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCC
Q 047844          116 TARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNG  195 (264)
Q Consensus       116 ~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g  195 (264)
                              .+..|.+|++.++..++.++++++++.|+++ +..|..|+||||+|+..|+.+++++|+ .|++++.+|.+|
T Consensus        64 --------~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~-n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G  133 (156)
T d1bd8a_          64 --------QDTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARG  133 (156)
T ss_dssp             --------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTS
T ss_pred             --------ccccccccccccccccccccccccccccccc-ccccCCCCeeecccccccccccccccc-ccccccccCCCC
Confidence                    7888999999999999999999999999985 678999999999999999999999887 689999999999


Q ss_pred             ccHHhHHHhcCChHHHHHHHhh
Q 047844          196 KTALHAAVCSRSCAASRCHKLH  217 (264)
Q Consensus       196 ~tpl~~A~~~~~~~~~~~l~~~  217 (264)
                      +||||+|+..|+.+++++|+.+
T Consensus       134 ~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         134 LTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHhh
Confidence            9999999999999999999875

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.7e-28  Score=203.99  Aligned_cols=187  Identities=22%  Similarity=0.235  Sum_probs=148.0

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccCCCCC---------------------------------chhHHHHHHhhhc
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKN---------------------------------TVLHVNIIASYTQ   48 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~---------------------------------t~L~~A~~~~~g~   48 (264)
                      .+|||+|+..|+.+++++|++.+...+..+..|.                                 |||+.|+  ..++
T Consensus       166 ~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~--~~~~  243 (408)
T d1n11a_         166 LTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAA--QEGH  243 (408)
T ss_dssp             CCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH--HTTC
T ss_pred             chHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHH--HhCc
Confidence            4689999999999999999873322222444444                                 4555555  5555


Q ss_pred             CcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCC
Q 047844           49 NKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEE  128 (264)
Q Consensus        49 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g  128 (264)
                              .++++++++.... .+..+..|.|||+.|+..++.+++++|+++|+++                 +..+..+
T Consensus       244 --------~~~~~~~~~~~~~-~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~-----------------~~~~~~~  297 (408)
T d1n11a_         244 --------AEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV-----------------DATTRMG  297 (408)
T ss_dssp             --------HHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-----------------TCCCSSC
T ss_pred             --------HhHhhhhhccccc-cccccCCCCChhhhhhhcCcHHHHHHHHHCCCcc-----------------ccccccc
Confidence                    5556665555554 4555666666666666666677777766666654                 3477889


Q ss_pred             CChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCCh
Q 047844          129 DTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSC  208 (264)
Q Consensus       129 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~  208 (264)
                      .||||.++..+..++++++++.|+++ +.+|..|+||||+|++.|+.+++++|+++|++++.+|.+|+||||+|+.+|+.
T Consensus       298 ~t~L~~~~~~~~~~~~~~ll~~g~~i-n~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~  376 (408)
T d1n11a_         298 YTPLHVASHYGNIKLVKFLLQHQADV-NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYI  376 (408)
T ss_dssp             CCHHHHHHHSSCSHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCH
T ss_pred             cccchhhcccCcceeeeeeccccccc-cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            99999999999999999999999996 78999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhh
Q 047844          209 AASRCHKLH  217 (264)
Q Consensus       209 ~~~~~l~~~  217 (264)
                      ++|++|...
T Consensus       377 ~iv~~L~~~  385 (408)
T d1n11a_         377 SVTDVLKVV  385 (408)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999987544

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=2.8e-28  Score=177.04  Aligned_cols=150  Identities=20%  Similarity=0.251  Sum_probs=138.5

Q ss_pred             CchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchh
Q 047844           35 NTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVE  114 (264)
Q Consensus        35 ~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~  114 (264)
                      .||||.||  +.|+        .+++++|++++++ ++ .|..|+||||+|+..++.++++.++........        
T Consensus         3 ~t~L~~Aa--~~g~--------~~~v~~LL~~ga~-~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~--------   62 (153)
T d1awcb_           3 GKKLLEAA--RAGQ--------DDEVRILMANGAP-FT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA--------   62 (153)
T ss_dssp             HHHHHHHH--HHTC--------HHHHHHHHHHTCC-CC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC--------
T ss_pred             CHHHHHHH--HCCC--------HHHHHHHHHcCCC-cc-cccCCCccccccccccccccccccccccccccc--------
Confidence            38999999  9999        9999999999987 44 689999999999999999999998887665433        


Q ss_pred             hHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCC
Q 047844          115 STARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPN  194 (264)
Q Consensus       115 ~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~  194 (264)
                               .+..+.++++.++...+.+++++++..|++. +..|..|+||||+|+..|+.+++++|+++|++++.+|.+
T Consensus        63 ---------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~  132 (153)
T d1awcb_          63 ---------RTKVDRTPLHMAASEGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKF  132 (153)
T ss_dssp             ---------CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             ---------cccccccccccccccccceeeecccccCCcc-ccccccCchHHHhhhhcchhheeeeccccccCCcccCCC
Confidence                     6677889999999999999999999999985 788999999999999999999999999999999999999


Q ss_pred             CccHHhHHHhcCChHHHHHH
Q 047844          195 GKTALHAAVCSRSCAASRCH  214 (264)
Q Consensus       195 g~tpl~~A~~~~~~~~~~~l  214 (264)
                      |.||||+|+.+|+.+++++|
T Consensus       133 g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         133 CKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             SCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHhC
Confidence            99999999999999999986

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.5e-28  Score=179.04  Aligned_cols=154  Identities=23%  Similarity=0.264  Sum_probs=139.6

Q ss_pred             cHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHH
Q 047844            3 SDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPL   82 (264)
Q Consensus         3 ~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L   82 (264)
                      ++||+||..|++++|+.|++.+...+.+|..|.||||.|+   .|+        .+++++|++.+.+ ++..+..|.+++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~---~~~--------~ei~~~Ll~~~a~-~~~~~~~~~~~l   70 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK---LGN--------PEIARRLLLRGAN-PDLKDRTGFAVI   70 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC---SSC--------HHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc---ccc--------ccccccccccccc-cccccccCcccc
Confidence            6899999999999999999943344558999999999765   589        9999999999998 788999999999


Q ss_pred             HHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCC
Q 047844           83 HVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSG  162 (264)
Q Consensus        83 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g  162 (264)
                      +.++..++.+.++.++..+...+                 ..+..|.+|+++|+..++.+++++|+++++...+.+|..|
T Consensus        71 ~~~~~~~~~~~~~~l~~~~~~~~-----------------~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g  133 (156)
T d1ihba_          71 HDAARAGFLDTLQTLLEFQADVN-----------------IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKG  133 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTT-----------------CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTS
T ss_pred             ccccccccccccccccccccccc-----------------ccccccccccccccccccccccccccccccccccccCCCC
Confidence            99999999999999999887743                 4889999999999999999999999999885468899999


Q ss_pred             CCHHHHHHHhChHHHHHHHHhhC
Q 047844          163 ETPLYLAAARAHKEISAEILQKC  185 (264)
Q Consensus       163 ~t~Lh~A~~~~~~~~~~~Ll~~g  185 (264)
                      .||||+|++.++.+++++|+++|
T Consensus       134 ~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         134 DTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcC
Confidence            99999999999999999999987

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3e-28  Score=177.58  Aligned_cols=151  Identities=24%  Similarity=0.315  Sum_probs=136.4

Q ss_pred             cHHHHHHHcCCchHHhhhhh-hcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChH
Q 047844            3 SDLYEAAAKGEIEPFNQLAI-DRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAP   81 (264)
Q Consensus         3 ~~l~~A~~~g~~~~~~~l~~-~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~   81 (264)
                      .+|+.||..|++++|+.|++ .+...+..|..|.||||+|+  . |+        .+++++|++.+.+ ++..+..|.+|
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~--~-~~--------~~~v~~Ll~~~~~-~~~~~~~~~~~   71 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM--F-GS--------TAIALELLKQGAS-PNVQDTSGTSP   71 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC--T-TC--------HHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc--c-cc--------ccccccccccccc-ccccccccccc
Confidence            47999999999999999998 34445558999999999887  5 88        9999999999998 78889999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCC
Q 047844           82 LHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGS  161 (264)
Q Consensus        82 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~  161 (264)
                      ++.++..++.++++++++.+.+++                 .++..|.||||+|++.|+.+++++|+ .|+++ +.+|.+
T Consensus        72 l~~~~~~~~~~~~~~~l~~~~~~n-----------------~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~-~~~d~~  132 (156)
T d1bd8a_          72 VHDAARTGFLDTLKVLVEHGADVN-----------------VPDGTGALPIHLAVQEGHTAVVSFLA-AESDL-HRRDAR  132 (156)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCSC-----------------CCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCT-TCCCTT
T ss_pred             cccccccccccccccccccccccc-----------------cccCCCCeeecccccccccccccccc-ccccc-cccCCC
Confidence            999999999999999999988754                 48899999999999999999999888 67775 788999


Q ss_pred             CCCHHHHHHHhChHHHHHHHHhh
Q 047844          162 GETPLYLAAARAHKEISAEILQK  184 (264)
Q Consensus       162 g~t~Lh~A~~~~~~~~~~~Ll~~  184 (264)
                      |+||||+|+..|+.+++++|+++
T Consensus       133 G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         133 GLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             SCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhh
Confidence            99999999999999999999875

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=3.4e-27  Score=182.38  Aligned_cols=175  Identities=18%  Similarity=0.181  Sum_probs=149.5

Q ss_pred             CchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhc--
Q 047844           35 NTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESG--  112 (264)
Q Consensus        35 ~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~--  112 (264)
                      .+|||.||  ..|+        .+.++.|++..+..++.+|.+|+||||+|+..|+.+++++|+++|++++.......  
T Consensus         1 n~pLh~A~--~~g~--------~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~   70 (229)
T d1ixva_           1 NYPLHQAC--MENE--------FFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSG   70 (229)
T ss_dssp             CCHHHHHH--HHTC--------HHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTS
T ss_pred             CHhHHHHH--HcCC--------HHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccc
Confidence            48999999  9999        99999999988877999999999999999999999999999999988765432211  


Q ss_pred             -----------hhhHHHHH--------hcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhC
Q 047844          113 -----------VESTARHM--------LGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARA  173 (264)
Q Consensus       113 -----------~~~~~~~~--------l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~  173 (264)
                                 ........        ....+..+.++++.++..++.+++++|+..|... ...+..|+||||+|+..|
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~  149 (229)
T d1ixva_          71 WTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVG  149 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccc-cccCCCCCCccchhhhcc
Confidence                       11111111        1235567889999999999999999999999985 678999999999999999


Q ss_pred             hHHHHHHHHhhC-CCCCcCCCCCccHHhHHHhcCChHHHHHHHhh-hCC
Q 047844          174 HKEISAEILQKC-PSPAHEGPNGKTALHAAVCSRSCAASRCHKLH-RSS  220 (264)
Q Consensus       174 ~~~~~~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~-~~~  220 (264)
                      +.+++++|++.+ .+++.+|.+|.||||+|+.+++.+++++|+.. ++.
T Consensus       150 ~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad  198 (229)
T d1ixva_         150 SLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE  198 (229)
T ss_dssp             CHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCC
T ss_pred             cccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCC
Confidence            999999999987 68899999999999999999999999999864 543

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.95  E-value=8.2e-28  Score=190.93  Aligned_cols=189  Identities=18%  Similarity=0.169  Sum_probs=150.7

Q ss_pred             CcHHHHHHH-cCCchHHhhhhh-hcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHH--------HHHhCCccc
Q 047844            2 NSDLYEAAA-KGEIEPFNQLAI-DRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVER--------IIEMCPSLL   71 (264)
Q Consensus         2 ~~~l~~A~~-~g~~~~~~~l~~-~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~--------ll~~~~~~~   71 (264)
                      +||||+++. .|..++++.|.+ ..+..  .+..|.||||+||  ..|+        .+++++        +++.|++ +
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n~~--~~~~g~T~Lh~A~--~~g~--------~~~v~~Ll~~~~~~~l~~Gad-v   67 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVNII--DPRHNRTVLHWIA--SNSS--------AEKSEDLIVHEAKECIAAGAD-V   67 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTTTC--CCSSCCCHHHHHH--CTTC--------CSCCTTHHHHHHHHHHHTCCC-T
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCCcC--CCCCCccHHHHHH--HcCC--------HHHHHHHHhcchhHHHHcCCC-c
Confidence            589997776 555555555555 44442  2356999999999  9999        555554        4667787 7


Q ss_pred             eecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCC
Q 047844           72 LQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGAD  151 (264)
Q Consensus        72 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  151 (264)
                      +.+|.+|+||||+|+..|+.+++++|+++|++++.                 ++..|.||+++|+..++.++++++...+
T Consensus        68 n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~-----------------~~~~g~t~l~~a~~~~~~~~~~~l~~~~  130 (277)
T d2fo1e1          68 NAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTI-----------------YNKSERSALHQAAANRDFGMMVYMLNST  130 (277)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC-----------------CCTTCCCHHHHHHHTTCHHHHHHHTTSH
T ss_pred             cccCCCCCeeecccccccccccccccccccccccc-----------------ccccccccccchhhhcchhhhhhhhhcc
Confidence            89999999999999999999999999999998655                 7778888888888888888777775321


Q ss_pred             C---C-------------------------------------------CCCCCCCCCCCHHHHHHHhChHHHHHHHH-hh
Q 047844          152 P---A-------------------------------------------FPYSANGSGETPLYLAAARAHKEISAEIL-QK  184 (264)
Q Consensus       152 ~---~-------------------------------------------~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll-~~  184 (264)
                      .   .                                           .....+..|+||||+++..++.+++++++ ..
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~  210 (277)
T d2fo1e1         131 KLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEK  210 (277)
T ss_dssp             HHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHS
T ss_pred             cccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccc
Confidence            0   0                                           01234557899999999999999998755 56


Q ss_pred             CCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhCC
Q 047844          185 CPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSS  220 (264)
Q Consensus       185 ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~  220 (264)
                      +.+.+.+|..|+||||+|+..|+.+++++|+.+++.
T Consensus       211 ~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gad  246 (277)
T d2fo1e1         211 GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS  246 (277)
T ss_dssp             CCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             cccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCC
Confidence            788999999999999999999999999999998865

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=2.8e-27  Score=171.61  Aligned_cols=150  Identities=21%  Similarity=0.249  Sum_probs=135.9

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChH
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAP   81 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~   81 (264)
                      +|||+.||..|+.++|++|++.+.... .|..|+||||+|+  ..++        .++++.++..... ....+..+.++
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~--~~~~--------~~~~~~~~~~~~~-~~~~~~~~~~~   70 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAA--QYGH--------FSTTEVLLRAGVS-RDARTKVDRTP   70 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHH--HHTC--------HHHHHHHHTTTCC-TTCCCTTCCCH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccc--cccc--------ccccccccccccc-ccccccccccc
Confidence            689999999999999999999443322 6899999999999  9999        9999999998877 45677788899


Q ss_pred             HHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCC
Q 047844           82 LHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGS  161 (264)
Q Consensus        82 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~  161 (264)
                      ++.++...+.++++++...+.+...                 ++..|.||||+|+..|+.+++++|++.|+++ +.+|.+
T Consensus        71 ~~~~~~~~~~~~~~~l~~~~~~~~~-----------------~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~-~~~d~~  132 (153)
T d1awcb_          71 LHMAASEGHANIVEVLLKHGADVNA-----------------KDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKF  132 (153)
T ss_dssp             HHHHHHHTCHHHHHHHHTTTCCTTC-----------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred             cccccccccceeeecccccCCcccc-----------------ccccCchHHHhhhhcchhheeeeccccccCC-cccCCC
Confidence            9999999999999999999877544                 8899999999999999999999999999996 788999


Q ss_pred             CCCHHHHHHHhChHHHHHHH
Q 047844          162 GETPLYLAAARAHKEISAEI  181 (264)
Q Consensus       162 g~t~Lh~A~~~~~~~~~~~L  181 (264)
                      |.||||+|+..|+.+++++|
T Consensus       133 g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         133 CKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             SCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHhC
Confidence            99999999999999999876

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.94  E-value=9.4e-29  Score=202.82  Aligned_cols=191  Identities=16%  Similarity=0.148  Sum_probs=146.8

Q ss_pred             CcHHHHHHHcCCchHHhh---hhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecC--C
Q 047844            2 NSDLYEAAAKGEIEPFNQ---LAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVN--A   76 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~---l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~--~   76 (264)
                      .||||+||..|+.+++++   |++.+...+.+|.+|+||||+||  ..|+        .+++++|++.+++ ++..+  .
T Consensus        91 ~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa--~~G~--------~~~v~~Ll~~g~~-~~~~~~~~  159 (346)
T d2ajaa1          91 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAA--ENGH--------LHVLNRLCELAPT-EIMAMIQA  159 (346)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHH--HTTC--------HHHHHHHHHSCTT-THHHHHSH
T ss_pred             CcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHH--HCCC--------HHHHHHHHHcCCC-cccccccc
Confidence            379999999999877765   56644444448899999999999  9999        9999999999988 55544  4


Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCC
Q 047844           77 KGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPY  156 (264)
Q Consensus        77 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~  156 (264)
                      +|+||||+|+..|+.+++++|++.|+.....              +..+.++.||++.|++.|+.+++++|++.|+++..
T Consensus       160 ~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~--------------~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~  225 (346)
T d2ajaa1         160 ENYHAFRLAAENGHLHVLNRLCELAPTEATA--------------MIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAY  225 (346)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHSCGGGHHH--------------HHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHH
T ss_pred             CCCChhHHHHHHhhHHHHHHHHHcCCccccc--------------ccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcch
Confidence            6999999999999999999999998765431              22334466788889999999999999987643200


Q ss_pred             --------------------------------CCCCC----------------CCCHHHHHHHhChHHHHHHHHhhCCC-
Q 047844          157 --------------------------------SANGS----------------GETPLYLAAARAHKEISAEILQKCPS-  187 (264)
Q Consensus       157 --------------------------------~~~~~----------------g~t~Lh~A~~~~~~~~~~~Ll~~ga~-  187 (264)
                                                      .....                +.++++.|+..+..+++++|++.+.. 
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~  305 (346)
T d2ajaa1         226 AEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIK  305 (346)
T ss_dssp             HHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTG
T ss_pred             HHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChh
Confidence                                            00111                13567777778889999999987753 


Q ss_pred             ----CCcCCCCCccHHhHHHhcCChHHHHHHHhh
Q 047844          188 ----PAHEGPNGKTALHAAVCSRSCAASRCHKLH  217 (264)
Q Consensus       188 ----~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~  217 (264)
                          ....+.+|.||||+|+..|+.+++++|+..
T Consensus       306 ~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         306 ALAPTATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             GGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             hhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence                344556789999999999999999999764

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.94  E-value=2.5e-26  Score=183.74  Aligned_cols=178  Identities=23%  Similarity=0.189  Sum_probs=136.8

Q ss_pred             CCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhh--
Q 047844           33 KKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIE--  110 (264)
Q Consensus        33 ~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~--  110 (264)
                      ++.|+|+.||  ..|+        .+++++|++.|++ ++..|.+|+||||+|+..|+.+++++|+++|.+.......  
T Consensus        39 ~~~t~l~~A~--~~G~--------~~~v~~Ll~~Gad-vn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~  107 (291)
T d1s70b_          39 DDGAVFLAAC--SSGD--------TEEVLRLLERGAD-INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGW  107 (291)
T ss_dssp             CHHHHHHHHH--HHTC--------HHHHHHHHHHCCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CCchHHHHHH--HcCC--------HHHHHHHHHCCCC-CCccCCCCCcHHHHHHhcCCceeeeeeccccccccccccccc
Confidence            3569999999  9999        9999999999999 8899999999999999999999999999998775442110  


Q ss_pred             --------hchhhHHHHHh------cCCCCCCCChhhHHHhcCCHHHHHHHhcC-CCC----------------------
Q 047844          111 --------SGVESTARHML------GMKNDEEDTALHEAVQSGSLDVVKILLGA-DPA----------------------  153 (264)
Q Consensus       111 --------~~~~~~~~~~l------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~----------------------  153 (264)
                              .+.......++      +..+..+.+++++|+..+..+.++.++.. +.+                      
T Consensus       108 ~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (291)
T d1s70b_         108 IPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNS  187 (291)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcc
Confidence                    11111111111      23445555556555555555555555421 111                      


Q ss_pred             ---CCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhCCC
Q 047844          154 ---FPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSSR  221 (264)
Q Consensus       154 ---~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~  221 (264)
                         .....+..|.||||.|+..|+.++++.|++.|++++.++..|+||||+|+..|+.+++++|+.+++..
T Consensus       188 ~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv  258 (291)
T d1s70b_         188 GHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDM  258 (291)
T ss_dssp             TCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             cccccccccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence               01345668999999999999999999999999999999999999999999999999999999998653

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.9e-26  Score=161.40  Aligned_cols=120  Identities=18%  Similarity=0.113  Sum_probs=110.0

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCC
Q 047844           78 GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYS  157 (264)
Q Consensus        78 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~  157 (264)
                      +.++||+|+..|+.+++++|+++|++++.                 ++..|.||+|+|+ .|+.+++++|++.|+++ +.
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~-----------------~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~-~~   63 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNA-----------------PNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NC   63 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTC-----------------CCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCcccc-----------------ccccccccccccc-ccccccccccccccccc-cc
Confidence            46899999999999999999999988554                 8999999999775 69999999999999996 56


Q ss_pred             CCCCCC-CHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHh
Q 047844          158 ANGSGE-TPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKL  216 (264)
Q Consensus       158 ~~~~g~-t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~  216 (264)
                      .+..+. ||||+|++.|+.+++++|+++|++++.+|..|+||+|+|+.+|+.+++++|+.
T Consensus        64 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          64 ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             CCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            666665 69999999999999999999999999999999999999999999999999864

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.7e-25  Score=172.09  Aligned_cols=159  Identities=23%  Similarity=0.224  Sum_probs=138.7

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCc-----cceecCC
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPS-----LLLQVNA   76 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~-----~~~~~~~   76 (264)
                      +||||+||..|+.+++++|++.+...+..|..|.|||+.|+  ..|+        .++++.+++.+..     .......
T Consensus        40 ~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~--~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~~  109 (221)
T d1iknd_          40 QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC--EQGC--------LASVGVLTQSCTTPHLHSILKATNY  109 (221)
T ss_dssp             CCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH--HHTC--------HHHHHHHHHSTTTTSSSCGGGCCCT
T ss_pred             Ccccccccccccccccccccccccccccccccccccccccc--cccc--------ccccchhhhhccccccccccccccc
Confidence            58999999999999999999943333448999999999999  9999        9999999996533     2344556


Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCC
Q 047844           77 KGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPY  156 (264)
Q Consensus        77 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~  156 (264)
                      .|.||||.|+..++.+++++++..|...+.                ..+..|.||||+|++.|+.+++++|++.|+++ +
T Consensus       110 ~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~----------------~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~-~  172 (221)
T d1iknd_         110 NGHTCLHLASIHGYLGIVELLVSLGADVNA----------------QEPCNGRTALHLAVDLQNPDLVSLLLKCGADV-N  172 (221)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHHTCCTTC----------------CCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCS-C
T ss_pred             ccchhhhHHhhcCChhheeeecccCccccc----------------ccccCCCCccccccccccHHHHHHHHhcCCcc-c
Confidence            789999999999999999999999877543                24567999999999999999999999999995 7


Q ss_pred             CCCCCCCCHHHHHHHhChHHHHHHHHhhCCC
Q 047844          157 SANGSGETPLYLAAARAHKEISAEILQKCPS  187 (264)
Q Consensus       157 ~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~  187 (264)
                      .+|..|+||||+|+..++.+++++|++.+.+
T Consensus       173 ~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         173 RVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             CCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             ccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            8999999999999999999999999988644

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=1.3e-26  Score=160.50  Aligned_cols=107  Identities=23%  Similarity=0.302  Sum_probs=101.5

Q ss_pred             ChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCC
Q 047844           79 DAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSA  158 (264)
Q Consensus        79 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~  158 (264)
                      .|||++|+..|+.+++++|++.|++++.                 ++..|.||||+|+..|+.+++++|++.|+++ +.+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~-----------------~~~~g~t~lh~A~~~~~~~~~~~ll~~g~di-n~~   64 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNR-----------------TLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAP   64 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCC-----------------CSSSSCCTTHHHHHHSTTTHHHHHHHSSCTT-TCC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcccc-----------------cccccccccccccccccccccccccccccee-eec
Confidence            3899999999999999999999988554                 8999999999999999999999999999996 788


Q ss_pred             CCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHH
Q 047844          159 NGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAV  203 (264)
Q Consensus       159 ~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~  203 (264)
                      |..|+||||+|+..|+.+++++|+++|++++.+|.+|.||+|+|.
T Consensus        65 d~~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          65 DKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             SSSCSCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             ccccccchhhhhhcCchhhhhhhhcccccceeeCCCCCCHHHHHh
Confidence            999999999999999999999999999999999999999999984

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=2.8e-25  Score=178.70  Aligned_cols=147  Identities=18%  Similarity=0.203  Sum_probs=115.3

Q ss_pred             cCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCH---HHHHHHHHHhhhcch
Q 047844           30 VTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHA---AVVEALIEIAKQESD  106 (264)
Q Consensus        30 ~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~---~~v~~Ll~~~~~~~~  106 (264)
                      .|..|.||||+||  ..|+        .+++++|++.+++ ++.+|..|+||||.||..++.   +.++.+++....   
T Consensus       103 ~D~~G~T~LH~Aa--~~g~--------~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---  168 (301)
T d1sw6a_         103 VDEHGNTPLHWLT--SIAN--------LELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---  168 (301)
T ss_dssp             CSTTCCCHHHHHH--HTTC--------HHHHHHHHHTTCC-TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---
T ss_pred             cCCCCCCHHHHHH--HcCC--------HHHHHHHHHCCCC-CCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh---
Confidence            3889999999999  9999        9999999999998 789999999999999987752   223334433221   


Q ss_pred             hhhhhchhhHHHHHhcCCCCCCCChhhHHHhcC----CHHHH--------HHHhcCCCCC--------------------
Q 047844          107 QEIESGVESTARHMLGMKNDEEDTALHEAVQSG----SLDVV--------KILLGADPAF--------------------  154 (264)
Q Consensus       107 ~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~----~~~~~--------~~Ll~~g~~~--------------------  154 (264)
                                   .+...+..|+||||.++..+    ...++        .++.+.+...                    
T Consensus       169 -------------~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (301)
T d1sw6a_         169 -------------CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERK  235 (301)
T ss_dssp             -------------GGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------
T ss_pred             -------------hhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcch
Confidence                         12337788999999887643    23333        2333322211                    


Q ss_pred             ----------------CCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHH
Q 047844          155 ----------------PYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAV  203 (264)
Q Consensus       155 ----------------~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~  203 (264)
                                      .+.+|..|+||||+|++.|+.+++++|+++|++++.+|..|.|||++|+
T Consensus       236 ~~~~~~~~~~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         236 DSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             HHHHHHHhhHHHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence                            3567899999999999999999999999999999999999999999985

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.3e-23  Score=160.41  Aligned_cols=178  Identities=22%  Similarity=0.221  Sum_probs=149.2

Q ss_pred             CCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHH----hCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchh
Q 047844           32 HKKNTVLHVNIIASYTQNKEGESVSTKFVERIIE----MCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQ  107 (264)
Q Consensus        32 ~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~----~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~  107 (264)
                      .+|.||||+||  ..|+        .+++++|++    .+.+ ++..|..|+||||+|+..|+.+++++|+++|+..+..
T Consensus         1 ~dG~TpLh~A~--~~g~--------~~~v~~Ll~~~~~~g~~-in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~   69 (228)
T d1k1aa_           1 EDGDTPLHIAV--VQGN--------LPAVHRLVNLFQQGGRE-LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMAL   69 (228)
T ss_dssp             CTTCCHHHHHH--HTTC--------HHHHHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             CCCccHHHHHH--HcCC--------HHHHHHHHHHHHHCCCC-CCccCCCCCccceehhccccccccccccccccccccc
Confidence            37999999999  9999        999999886    5666 7889999999999999999999999999999876554


Q ss_pred             hhhhchhh----------HHHHH----------hcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHH
Q 047844          108 EIESGVES----------TARHM----------LGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLY  167 (264)
Q Consensus       108 ~~~~~~~~----------~~~~~----------l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh  167 (264)
                      ........          .....          .+.......++++.+.........+.|.....+........+.++++
T Consensus        70 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~  149 (228)
T d1k1aa_          70 DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLI  149 (228)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHH
T ss_pred             ccccccccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHH
Confidence            32111111          11110          13345567889999999999999999998887766677888999999


Q ss_pred             HHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhCC
Q 047844          168 LAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSS  220 (264)
Q Consensus       168 ~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~  220 (264)
                      .|+..+...+++.+++.|.+.+.++..|.||||+|+..|+.+++++|+.+++.
T Consensus       150 ~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad  202 (228)
T d1k1aa_         150 HAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD  202 (228)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             HHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCC
Confidence            99999999999999999999999999999999999999999999999998864

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.5e-25  Score=156.78  Aligned_cols=121  Identities=20%  Similarity=0.260  Sum_probs=110.1

Q ss_pred             CCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhc
Q 047844           33 KKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESG  112 (264)
Q Consensus        33 ~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~  112 (264)
                      .+.++||.|+  ..|+        .+++++|++.+.+ ++.++..|.||||+|+ .|+.+++++|+++|++++.      
T Consensus         2 p~~~~L~~Aa--~~G~--------~~~v~~Ll~~gad-~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~------   63 (125)
T d1bi7b_           2 PSADWLATAA--ARGR--------VEEVRALLEAGAN-PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNC------   63 (125)
T ss_dssp             CSTTHHHHHH--HHTC--------HHHHHHHHTTTCC-TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCC------
T ss_pred             CChhHHHHHH--HCCC--------HHHHHHHHHcCCc-cccccccccccccccc-ccccccccccccccccccc------
Confidence            3568999999  9999        9999999999988 7899999999999775 7999999999999988654      


Q ss_pred             hhhHHHHHhcCCCCCCC-ChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHh
Q 047844          113 VESTARHMLGMKNDEED-TALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQ  183 (264)
Q Consensus       113 ~~~~~~~~l~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~  183 (264)
                                 ++..+. ||||+|++.|+.+++++|++.|+++ +.+|..|+||||+|+..|+.+++++|+.
T Consensus        64 -----------~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          64 -----------ADPATLTRPVHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             -----------CCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             -----------cccccccccccccccccccccccccccccccc-ccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence                       666665 6999999999999999999999996 7899999999999999999999999975

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.2e-24  Score=153.25  Aligned_cols=121  Identities=24%  Similarity=0.179  Sum_probs=109.7

Q ss_pred             hHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCC
Q 047844           80 APLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSAN  159 (264)
Q Consensus        80 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~  159 (264)
                      +.|+.|+..|+.+++++|+++|++++.                 +|..|.||||+|+..|+.+++++|++.|+++ +..|
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~-----------------~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~-~~~d   64 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSL-----------------PNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAAD   64 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCC-----------------CCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccc-----------------ccccccccccccccccccccccccccccccc-cccc
Confidence            679999999999999999999998654                 8999999999999999999999999999995 7899


Q ss_pred             CCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCC-CCccHHhHH--HhcCChHHHHHHHhhh
Q 047844          160 GSGETPLYLAAARAHKEISAEILQKCPSPAHEGP-NGKTALHAA--VCSRSCAASRCHKLHR  218 (264)
Q Consensus       160 ~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~-~g~tpl~~A--~~~~~~~~~~~l~~~~  218 (264)
                      .+|+||||+|+..|+.+++++|+++|++++..+. .+.||++++  ...|+.+++++|+...
T Consensus        65 ~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          65 SDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             ccCcccccccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            9999999999999999999999999999998775 578887665  6778899999997653

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.4e-24  Score=150.83  Aligned_cols=122  Identities=20%  Similarity=0.158  Sum_probs=109.0

Q ss_pred             chhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhh
Q 047844           36 TVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVES  115 (264)
Q Consensus        36 t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~  115 (264)
                      ++|+.|+  ..|+        .+++++|++.+.+ ++.+|.+|+||||+|+..|+.+++++|++.|++.+          
T Consensus         3 ~lL~~A~--~~G~--------~~~v~~Ll~~g~d-~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~----------   61 (130)
T d1ycsb1           3 ALLLDSS--LEGE--------FDLVQRIIYEVDD-PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN----------   61 (130)
T ss_dssp             HHHHHHH--HHTC--------HHHHHHHTSTTSS-CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTT----------
T ss_pred             HHHHHHH--HcCC--------HHHHHHHHHcCCC-ccccccccccccccccccccccccccccccccccc----------
Confidence            6899999  9999        9999999999998 89999999999999999999999999999998754          


Q ss_pred             HHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHH--HHhChHHHHHHHHhhC
Q 047844          116 TARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLA--AARAHKEISAEILQKC  185 (264)
Q Consensus       116 ~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A--~~~~~~~~~~~Ll~~g  185 (264)
                             .+|.+|+||||+|+..|+.+++++|+++|+++.......+.||++++  +..|+.+++++|+..+
T Consensus        62 -------~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          62 -------AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             -------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             -------cccccCcccccccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence                   48999999999999999999999999999997433345688987765  5678899999998753

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=1.6e-25  Score=155.07  Aligned_cols=107  Identities=21%  Similarity=0.215  Sum_probs=100.5

Q ss_pred             CchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchh
Q 047844           35 NTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVE  114 (264)
Q Consensus        35 ~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~  114 (264)
                      .|||++|+  +.|+        .+++++|++.+.+ ++..+..|+||||+|+..|+.+++++|+++|++++         
T Consensus         3 ~tpL~~A~--~~g~--------~~~v~~Ll~~g~d-~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din---------   62 (118)
T d1myoa_           3 DKEFMWAL--KNGD--------LDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN---------   62 (118)
T ss_dssp             HHHHHHHH--HTTC--------HHHHHHHHTTTCC-CCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTT---------
T ss_pred             ChHHHHHH--HCCC--------HHHHHHHHHhhhc-cccccccccccccccccccccccccccccccceee---------
Confidence            47999999  9999        9999999999988 88999999999999999999999999999998854         


Q ss_pred             hHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHH
Q 047844          115 STARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAA  170 (264)
Q Consensus       115 ~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~  170 (264)
                              .++..|.||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|.
T Consensus        63 --------~~d~~g~tpLh~A~~~~~~~~v~~Ll~~Gad~-~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          63 --------APDKHHITPLLSAVYEGHVSCVKLLLSKGADK-TVKGPDGLTALEATD  109 (118)
T ss_dssp             --------CCSSSCSCHHHHHHTTTCCHHHHHHHTTCCCS-SSSSSSTCCCCCTCS
T ss_pred             --------ecccccccchhhhhhcCchhhhhhhhcccccc-eeeCCCCCCHHHHHh
Confidence                    48999999999999999999999999999996 789999999999883

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.8e-23  Score=163.73  Aligned_cols=164  Identities=18%  Similarity=0.176  Sum_probs=139.1

Q ss_pred             CcHHHHHHHcCCchHHhhhhhh---ccc-------ccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccc
Q 047844            2 NSDLYEAAAKGEIEPFNQLAID---RQL-------GSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLL   71 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~---~~~-------~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~   71 (264)
                      .++++.|+..|+...++.++..   .+.       ....+..|.||||+|+  ..|+        .+++++|++.....+
T Consensus       106 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~--~~~~--------~~~~~~Ll~~~~~~i  175 (285)
T d1wdya_         106 FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA--EKGH--------VEVLKILLDEMGADV  175 (285)
T ss_dssp             CBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHH--HHTC--------HHHHHHHHHTSCCCT
T ss_pred             CchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHH--HcCC--------HHHHHHHHhccCCCc
Confidence            4789999999999999888861   111       1124556999999999  9999        999999998754447


Q ss_pred             eecCCCCChHHHHHHHhC----CHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHH
Q 047844           72 LQVNAKGDAPLHVAARYG----HAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKIL  147 (264)
Q Consensus        72 ~~~~~~g~t~L~~A~~~g----~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~L  147 (264)
                      +..+..|.+++..+...+    ..+++++|+++|++++.                 ++..|.||||+|++.|+.+++++|
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~-----------------~~~~g~t~L~~a~~~~~~~~v~~l  238 (285)
T d1wdya_         176 NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV-----------------RGERGKTPLILAVEKKHLGLVQRL  238 (285)
T ss_dssp             TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSC-----------------CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCc-----------------cCCCCCCccchhhhcCcHHHHHHH
Confidence            888999998888776544    45799999999988544                 889999999999999999999999


Q ss_pred             hc-CCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCC
Q 047844          148 LG-ADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGP  193 (264)
Q Consensus       148 l~-~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~  193 (264)
                      ++ .|+++ +.+|.+|.||||+|++.|+.+++++|+++||+++.+|.
T Consensus       239 L~~~g~di-n~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         239 LEQEHIEI-NDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             HHSSSCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             HHcCCCCC-cCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccC
Confidence            97 47785 78999999999999999999999999999999999873

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.90  E-value=6.3e-23  Score=155.88  Aligned_cols=163  Identities=21%  Similarity=0.263  Sum_probs=136.1

Q ss_pred             HHHHHHHHHhCCcccee-cCCCCChHHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhH----------HHHH-----
Q 047844           57 TKFVERIIEMCPSLLLQ-VNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVEST----------ARHM-----  120 (264)
Q Consensus        57 ~~~~~~ll~~~~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~----------~~~~-----  120 (264)
                      .++|++|+++|++ ++. .|.+|.||||+||..|+.+++++|++.|+.++..+........          ....     
T Consensus         2 ~~~v~~Ll~~g~d-in~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (209)
T d1ot8a_           2 AQVISDLLAQGAE-LNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRA   80 (209)
T ss_dssp             HHHHHHHHHHHHH-HHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTT
T ss_pred             HHHHHHHHHCCCC-cCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccccccccccc
Confidence            6899999999999 665 6899999999999999999999999999887654322111110          0000     


Q ss_pred             --hcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccH
Q 047844          121 --LGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTA  198 (264)
Q Consensus       121 --l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tp  198 (264)
                        .......|.++.+.+.........+.|...+.++ +..+..|+||++.++..+..++++.+++.+.+++..|..|.||
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~Tp  159 (209)
T d1ot8a_          81 TNLNARMHDGTTPLILAARLAIEGMVEDLITADADI-NAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETP  159 (209)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             cccccccccccccccccccccchhhhhhhhhhcccc-cccCCCCCCcchhhcccCcceeeeeeccccccccccccccccc
Confidence              1123455778888888888999999999999985 6788999999999999999999999999999999999999999


Q ss_pred             HhHHHhcCChHHHHHHHhhhCCC
Q 047844          199 LHAAVCSRSCAASRCHKLHRSSR  221 (264)
Q Consensus       199 l~~A~~~~~~~~~~~l~~~~~~~  221 (264)
                      ||+|+..|+.+++++|+.+++..
T Consensus       160 L~~A~~~g~~~~v~~Ll~~gad~  182 (209)
T d1ot8a_         160 LFLAAREGSYEASKALLDNFANR  182 (209)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             cchhccccHHHHHHHHHHCCCCC
Confidence            99999999999999999988653

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=9.1e-24  Score=169.78  Aligned_cols=161  Identities=17%  Similarity=0.186  Sum_probs=114.0

Q ss_pred             CcHHHHHHHcCCchHHhhhhhhcccccccCCCCCchhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccceecCCCCChH
Q 047844            2 NSDLYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAP   81 (264)
Q Consensus         2 ~~~l~~A~~~g~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~   81 (264)
                      +||||+||..|+.++|++|++.+-..+.+|..|.||||.|+  ..++..+     ...+..+++.....+...|..|+||
T Consensus       108 ~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~--~~~~~~~-----~~~~~~ll~~l~~~~~~~d~~g~t~  180 (301)
T d1sw6a_         108 NTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAV--KSVNNYD-----SGTFEALLDYLYPCLILEDSMNRTI  180 (301)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHH--HSSHHHH-----TTCHHHHHHHHGGGGGEECTTCCCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhh--hcccchh-----hhhHHHHHHHHhhhhhhcccccCCH
Confidence            48999999999999999999944444458999999999999  8776211     1112233333223356779999999


Q ss_pred             HHHHHHhCC----HHHHH--------HHHHHhhhcchhhh--------------------hhchhhHHHHHhcCCCCCCC
Q 047844           82 LHVAARYGH----AAVVE--------ALIEIAKQESDQEI--------------------ESGVESTARHMLGMKNDEED  129 (264)
Q Consensus        82 L~~A~~~g~----~~~v~--------~Ll~~~~~~~~~~~--------------------~~~~~~~~~~~l~~~~~~g~  129 (264)
                      ||.++..+.    ..+++        +++..+........                    ...........+|.+|..|+
T Consensus       181 lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~  260 (301)
T d1sw6a_         181 LHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGD  260 (301)
T ss_dssp             HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSC
T ss_pred             HHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCC
Confidence            999887553    33333        33333322211100                    00111123344789999999


Q ss_pred             ChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHH
Q 047844          130 TALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAA  170 (264)
Q Consensus       130 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~  170 (264)
                      ||||+|++.|+.+++++|++.|+++ +.+|..|.|||++|+
T Consensus       261 TpLh~A~~~g~~~iv~~Ll~~GAd~-~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         261 TCLNIAARLGNISIVDALLDYGADP-FIANKSGLRPVDFGA  300 (301)
T ss_dssp             CHHHHHHHHCCHHHHHHHHHTTCCT-TCCCTTSCCGGGGTC
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHcC
Confidence            9999999999999999999999995 789999999999884

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=1.7e-22  Score=145.75  Aligned_cols=129  Identities=21%  Similarity=0.167  Sum_probs=111.0

Q ss_pred             HHHHHHHhCCHHHHHHHHHHhhhcchhhhhhchhhHHHHHhcCCCCCCCChhhHHHhc---CCHHHHHHHhcCCCCCCCC
Q 047844           81 PLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQS---GSLDVVKILLGADPAFPYS  157 (264)
Q Consensus        81 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~g~~~~~~  157 (264)
                      .|+.|+..++...+..++..|.+.....           .....+..|.||||+|++.   |..+++++|++.|+++ +.
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~-----------~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi-n~   76 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKI-----------PLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DK   76 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBC-----------CCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TC
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCC-----------CcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh-hh
Confidence            4567888999988888888876643311           0122467799999999974   6899999999999996 78


Q ss_pred             CCCCCCCHHHHHHHhChHHHHHHHHhhCCCCCcCCCCCccHHhHHHhcCChHHHHHHHhhhCCC
Q 047844          158 ANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALHAAVCSRSCAASRCHKLHRSSR  221 (264)
Q Consensus       158 ~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~l~~~~~~~  221 (264)
                      +|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+..+...
T Consensus        77 ~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          77 QTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             hhhhhccccccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999877544

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=5.2e-22  Score=143.18  Aligned_cols=123  Identities=21%  Similarity=0.223  Sum_probs=107.1

Q ss_pred             hhHHHHHHhhhcCcCCCcccHHHHHHHHHhCCccc-----eecCCCCChHHHHHHHh---CCHHHHHHHHHHhhhcchhh
Q 047844           37 VLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLL-----LQVNAKGDAPLHVAARY---GHAAVVEALIEIAKQESDQE  108 (264)
Q Consensus        37 ~L~~A~~~~~g~~~~~~~~~~~~~~~ll~~~~~~~-----~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~  108 (264)
                      .|..|+  ..++        ...+..++..+.+..     ...+..|+||||+|+..   |+.+++++|+++|++++   
T Consensus         9 ~L~~Av--~~~d--------l~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin---   75 (154)
T d1dcqa1           9 SLCEAV--KTRD--------IFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD---   75 (154)
T ss_dssp             HHHHHH--HTTC--------HHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTT---
T ss_pred             HHHHHH--HhCC--------HHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChh---
Confidence            456777  8888        999999988876622     22367799999999985   67899999999998854   


Q ss_pred             hhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHhhCCC
Q 047844          109 IESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPS  187 (264)
Q Consensus       109 ~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ga~  187 (264)
                                    .++..|.||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.+++++|++.++.
T Consensus        76 --------------~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          76 --------------KQTGKGSTALHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             --------------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             --------------hhhhhhccccccccccccccccccccccCccc-cccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence                          48999999999999999999999999999996 78999999999999999999999999998754

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.87  E-value=2.2e-25  Score=182.54  Aligned_cols=132  Identities=18%  Similarity=0.152  Sum_probs=107.9

Q ss_pred             cCCCCCchhHHHHHHhhhcCcCCCcccHHHHHH---HHHhCCccceecCCCCChHHHHHHHhCCHHHHHHHHHHhhhcch
Q 047844           30 VTHKKNTVLHVNIIASYTQNKEGESVSTKFVER---IIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESD  106 (264)
Q Consensus        30 ~~~~g~t~L~~A~~~~~g~~~~~~~~~~~~~~~---ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~  106 (264)
                      .+..|.|||++||  +.|+        .+++++   |++.+.+ ++..|.+|+||||+|+..|+.+++++|++.|++++.
T Consensus        86 ~~~~~~t~L~~Aa--~~g~--------~~~~~~~~~L~~~~~~-in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~  154 (346)
T d2ajaa1          86 KGIKSEVICFVAA--ITGC--------SSALDTLCLLLTSDEI-VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM  154 (346)
T ss_dssp             HTCCHHHHHHHHH--HHCC--------HHHHHHHTTC--CCSS-CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHH
T ss_pred             ccCCCCcHHHHHH--HhCC--------HHHHHHHHHHHhCCCc-ccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccc
Confidence            5778999999999  9999        888776   6778887 888999999999999999999999999999988655


Q ss_pred             hhhhhchhhHHHHHhcCCCCCCCChhhHHHhcCCHHHHHHHhcCCCCCC--CCCCCCCCCHHHHHHHhChHHHHHHHHhh
Q 047844          107 QEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFP--YSANGSGETPLYLAAARAHKEISAEILQK  184 (264)
Q Consensus       107 ~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~  184 (264)
                      .+               .+.+|.||||+|+..|+.+++++|++.|+...  +..+.++.||+|.|+.+|+.+++++|++.
T Consensus       155 ~~---------------~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~  219 (346)
T d2ajaa1         155 AM---------------IQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC  219 (346)
T ss_dssp             HH---------------HSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTS
T ss_pred             cc---------------cccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhC
Confidence            21               23458899999999999999999999987631  12334567888889999999999999987


Q ss_pred             CCC
Q 047844          185 CPS  187 (264)
Q Consensus       185 ga~  187 (264)
                      |++
T Consensus       220 ga~  222 (346)
T d2ajaa1         220 PVM  222 (346)
T ss_dssp             HHH
T ss_pred             CCC
Confidence            644