Citrus Sinensis ID: 047845
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1801 | 2.2.26 [Sep-21-2011] | |||||||
| Q6KC79 | 2804 | Nipped-B-like protein OS= | yes | no | 0.666 | 0.428 | 0.256 | 2e-95 | |
| F5HSE3 | 2381 | Nipped-B-like protein A O | yes | no | 0.669 | 0.506 | 0.263 | 3e-92 | |
| F1QBY1 | 2876 | Nipped-B-like protein B O | yes | no | 0.650 | 0.407 | 0.258 | 1e-91 | |
| Q6KCD5 | 2798 | Nipped-B-like protein OS= | yes | no | 0.414 | 0.266 | 0.276 | 9e-81 | |
| Q7PLI2 | 2077 | Nipped-B protein OS=Droso | yes | no | 0.401 | 0.348 | 0.261 | 5e-62 | |
| Q95XZ5 | 2203 | Nipped-B-like protein pqn | yes | no | 0.415 | 0.339 | 0.255 | 4e-50 | |
| Q00333 | 2072 | Protein rad9 OS=Coprinops | N/A | no | 0.375 | 0.326 | 0.228 | 3e-40 | |
| Q09725 | 1587 | Sister chromatid cohesion | yes | no | 0.362 | 0.410 | 0.212 | 6e-15 | |
| Q750S2 | 1479 | Sister chromatid cohesion | yes | no | 0.075 | 0.091 | 0.253 | 2e-05 | |
| Q04002 | 1493 | Sister chromatid cohesion | yes | no | 0.078 | 0.094 | 0.216 | 0.0006 |
| >sp|Q6KC79|NIPBL_HUMAN Nipped-B-like protein OS=Homo sapiens GN=NIPBL PE=1 SV=2 | Back alignment and function desciption |
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Score = 352 bits (902), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 362/1410 (25%), Positives = 637/1410 (45%), Gaps = 209/1410 (14%)
Query: 200 ATIMNFCEMLEDFCGRAEIPTDDQNDTELLSLPVADVRIVVNEIMSLRAKKLLHLVSVDI 259
A+I N + LED A DD+ ELL L + + +E ++A ++ +S D
Sbjct: 1204 ASIENILDNLEDMDFTA-FGDDDEIPQELL-LGKHQLNELGSESAKIKAMGIMDKLSTDK 1261
Query: 260 LVRLLRVLDHQIHRAEGLSV--------DEREHLDSDRV-SMVFCALESIHAALAVMAHD 310
V++L +L+ I LS +E E L D + V + ++ + +M
Sbjct: 1262 TVKVLNILEKNIQDGSKLSTLLNHNNDTEEEERLWRDLIMERVTKSADACLTTINIMTSP 1321
Query: 311 HMPKQLYKEEIIERVLEFSRHQITDVM-SAYDPSYRALHKTSESAALEVDEDEEVDADLG 369
+MPK +Y E++IERV+++++ + + + YDP YR +D G
Sbjct: 1322 NMPKAVYIEDVIERVIQYTKFHLQNTLYPQYDPVYR------------------LDPHGG 1363
Query: 370 S--ASKRRRTMKNVKVKRSAFNRVSGAVNSILQKLCTILGLLKDLLLIERLSDSCILQLV 427
+SK +R + +R + + K+C I+ L +LL I+ L+D+ ILQ+
Sbjct: 1364 GLLSSKAKRAKCSTHKQR--------VIVMLYNKVCDIVSSLSELLEIQLLTDTTILQVS 1415
Query: 428 KTSFTTFLVDNVQLLQLKAIGLLSAIFYSYTQHRTYVIDEILLLLWKLPSTKRALRTYHL 487
T F V+NV LQL AI L++A+F Y +HR +++EI L +LP++KR+LR + L
Sbjct: 1416 SMGITPFFVENVSELQLCAIKLVTAVFSRYEKHRQLILEEIFTSLARLPTSKRSLRNFRL 1475
Query: 488 P----DEEQRQIQMVTALLIQLVHSSANLPEALRKATSGSTILEVQIDSSYP-TKCHEAA 542
D E IQMVTAL++QL+ +LP + K ++ +ID T +E A
Sbjct: 1476 NSSDMDGEPMYIQMVTALVLQLIQCVVHLPSS-EKDSNAEEDSNKKIDQDVVITNSYETA 1534
Query: 543 TDTCCLFWTRVLQRFTSVKAQDASELKVMMENLVMDLLTTLNLPEYPASAPILEVLCVLL 602
T F + L++ S + ++ + + + EN V DLL+T+N PE+PA+ +L +L LL
Sbjct: 1535 MRTAQNFLSIFLKKCGSKQGEE--DYRPLFENFVQDLLSTVNKPEWPAAELLLSLLGRLL 1592
Query: 603 LQNAGPKSKDVSARSMAIDLLGTIAARLKQEAVLCGRERFWMLQELVREDSSDQSYPKDL 662
+ KS +++ R ++D LGT+AARL+++AV ++ ++ ++++ S + + L
Sbjct: 1593 VHQFSNKSTEMALRVASLDYLGTVAARLRKDAVTSKMDQ-GSIERILKQVSGGEDEIQQL 1651
Query: 663 CCVCLDGRVEKRVFMCQGCQRLFHADCLGVREHEVPNRGWNCQLCLCRNQLLVLQ----S 718
LD ++ + + D V + W L + + Q S
Sbjct: 1652 QKALLD-------YLDENTE----TDPSLVFSRKFYIAQWFRDTTLETEKAMKSQKDEES 1700
Query: 719 YCKSHCKGDINKSHS---RSESNPETSDTITKLEIVQQMLLNYLQDAVSADEMNLFVRWF 775
+H +I + R+E+ + +I K Q L D V D+ L VR+
Sbjct: 1701 SEGTHHAKEIETTGQIMHRAENRKKFLRSIIKTTPSQFSTLKMNSDTVDYDDACLIVRYL 1760
Query: 776 YVCLWYKDDPEAQQKSMYYLARLKSKEIVRESGTISLSLTRDTVKKITLALGQNNSFSRG 835
P AQ +Y +I+R G ++++ +K ++ + + S
Sbjct: 1761 ASMR-----PFAQSFDIYLT------QILRVLGENAIAVRTKAMKCLSEVVAVDPSILAR 1809
Query: 836 FD--KILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISV 893
D + +H L+ +NS +R A+ + V P+ L ++ + +E R D+ ISV
Sbjct: 1810 LDMQRGVHGRLM---DNSTSVREAAVELLGRFVLCRPQ-LAEQYYDMLIE-RILDTGISV 1864
Query: 894 REAALELLAGILLHILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACI 953
R+ +++L RD+C F + T C+
Sbjct: 1865 RKRVIKIL----------------------------------RDICIEQPTFPKITEMCV 1890
Query: 954 EIISRVNDDESSIQDLVCKTFYEFWFEEPSGLQTQYFGDGSSVPLEVAKKTEQIVEMSRG 1013
++I RVND+E I+ LV +TF + WF P K M+R
Sbjct: 1891 KMIRRVNDEE-GIKKLVNETFQKLWF----------------TPTPHNDKE----AMTRK 1929
Query: 1014 LPNHQLLVTVIKRNLALDFFPQ-------SAKAAGINPMSLASVRRRCELMCKCLLERIL 1066
+ N +V R+ D+F Q S + + P V++ C + L+E IL
Sbjct: 1930 ILNITDVVAAC-RDTGYDWFEQLLQNLLKSEEDSSYKP-----VKKACTQLVDNLVEHIL 1983
Query: 1067 QVEE----MNNEGMEM-RTLPYVLVLHAFCVVDPTLCAPVSDPSQFVITLQPYLKSQVDN 1121
+ EE +N+G+ R + + L F + P L + +T+QPYL ++
Sbjct: 1984 KYEESLADSDNKGVNSGRLVACITTLFLFSKIRPQLMV------KHAMTMQPYLTTKCST 2037
Query: 1122 R-------VVAKFLESVIFIIDALPSSVIEELEQDLKHMIVRHSFLTVVHACIKCLCSVS 1174
+ VAK LE V+ +++ + + +E+DL +I+++ +TVV C+ CL +V
Sbjct: 2038 QNDFMVICNVAKILELVVPLMEHPSETFLATIEEDLMKLIIKYG-MTVVQHCVSCLGAVV 2096
Query: 1175 KISGKGLSTVEHLILVFF----KYLDSHNPD--------SKQVVGRSLFCLGLLIR-YGS 1221
+ V ++ K H D +K + RSLF +G L R +
Sbjct: 2097 NKVTQNFKFVWACFNRYYGAISKLKSQHQEDPNNTSLLTNKPALLRSLFTVGALCRHFDF 2156
Query: 1222 SLLTTSYEKNIDIVSN-LNLFKRYLRMEDFSVKVRSLQALGFVLIARPEHMLEKDIGKIL 1280
L ++I L L + + D V+ +++ LGF I P M E+++ +
Sbjct: 2157 DLEDFKGNSKVNIKDKVLELLMYFTKHSDEEVQTKAIIGLGFAFIQHPSLMFEQEVKNLY 2216
Query: 1281 EATLAD-SSHIRLKMQALQNLYEYLLDAENQMETDKGSGNEVEYTVEDGHSVPVAAGAGD 1339
L+D +S + LK+Q L+NL YL + + +M+ +V + V++G
Sbjct: 2217 NNILSDKNSSVNLKIQVLKNLQTYLQEEDTRMQQADRDWKKVAKQEDLKEMGDVSSG--- 2273
Query: 1340 TNICGGIIQLYWDKILGRCLDANEEVRQTALKIVEVVLRQGLVHPITCVPYLIALETDPQ 1399
+ I+QLY ++L VR AL ++ + L QGL+HP+ CVPYLIA+ TDP+
Sbjct: 2274 --MSSSIMQLYLKQVLEAFFHTQSSVRHFALNVIALTLNQGLIHPVQCVPYLIAMGTDPE 2331
Query: 1400 EVNSKLAHHLLMNMNEKYPAFFESRLGDGLQMSFVFIQSIGGGSSECRNQKFQSKAAGTM 1459
A L+ +++KY F + G++MS+ Q+I N + G
Sbjct: 2332 PAMRNKADQQLVEIDKKYAGFIHMKAVAGMKMSYQVQQAI--------NTCLKDPVRGFR 2383
Query: 1460 KGKSDGSSLTQARLGVSQIYKLIRGNRNSRNKFMSSIVRKFDNPSCSDLVIPFLMYCTEV 1519
+ +S S+L S +Y +IRGNR R F+ S++ FD+ + +D+ + L+Y +
Sbjct: 2384 QDES-SSAL------CSHLYSMIRGNRQHRRAFLISLLNLFDDTAKTDVTM--LLYIADN 2434
Query: 1520 LALLPFSSPDEPLYLIYTINRVIQVRAGAL 1549
LA P+ + +EPL++++ I+ + V L
Sbjct: 2435 LACFPYQTQEEPLFIMHHIDITLSVSGSNL 2464
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Probably plays a structural role in chromatin. Involved in sister chromatid cohesion, possibly by interacting with the cohesin complex. Homo sapiens (taxid: 9606) |
| >sp|F5HSE3|NIPLA_DANRE Nipped-B-like protein A OS=Danio rerio GN=nipbla PE=2 SV=1 | Back alignment and function description |
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| >sp|F1QBY1|NIPLB_DANRE Nipped-B-like protein B OS=Danio rerio GN=nipblb PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6KCD5|NIPBL_MOUSE Nipped-B-like protein OS=Mus musculus GN=Nipbl PE=1 SV=1 | Back alignment and function description |
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| >sp|Q7PLI2|NIPB_DROME Nipped-B protein OS=Drosophila melanogaster GN=Nipped-B PE=1 SV=3 | Back alignment and function description |
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| >sp|Q95XZ5|NPBL_CAEEL Nipped-B-like protein pqn-85 OS=Caenorhabditis elegans GN=pqn-85 PE=3 SV=2 | Back alignment and function description |
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| >sp|Q00333|NPBL_COPC7 Protein rad9 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) GN=rad9 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q09725|MIS4_SCHPO Sister chromatid cohesion protein mis4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mis4 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q750S2|SCC2_ASHGO Sister chromatid cohesion protein 2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SCC2 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q04002|SCC2_YEAST Sister chromatid cohesion protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCC2 PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1801 | ||||||
| 224141489 | 1815 | predicted protein [Populus trichocarpa] | 0.975 | 0.968 | 0.724 | 0.0 | |
| 296082998 | 1748 | unnamed protein product [Vitis vinifera] | 0.950 | 0.979 | 0.717 | 0.0 | |
| 255570280 | 1758 | pearli, putative [Ricinus communis] gi|2 | 0.949 | 0.972 | 0.687 | 0.0 | |
| 449439037 | 1822 | PREDICTED: nipped-B-like protein-like [C | 0.978 | 0.967 | 0.679 | 0.0 | |
| 449483325 | 1819 | PREDICTED: LOW QUALITY PROTEIN: nipped-B | 0.978 | 0.969 | 0.678 | 0.0 | |
| 359489025 | 1967 | PREDICTED: nipped-B-like protein-like [V | 0.875 | 0.801 | 0.710 | 0.0 | |
| 297811695 | 1847 | sister chromatid cohesion 2 [Arabidopsis | 0.960 | 0.936 | 0.639 | 0.0 | |
| 186523129 | 1846 | cohesin loading factor subunit SCC2 [Ara | 0.960 | 0.936 | 0.638 | 0.0 | |
| 334187704 | 1844 | cohesin loading factor subunit SCC2 [Ara | 0.961 | 0.938 | 0.638 | 0.0 | |
| 356551002 | 1723 | PREDICTED: nipped-B-like protein-like [G | 0.907 | 0.948 | 0.655 | 0.0 |
| >gi|224141489|ref|XP_002324104.1| predicted protein [Populus trichocarpa] gi|222867106|gb|EEF04237.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2575 bits (6674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1317/1818 (72%), Positives = 1514/1818 (83%), Gaps = 61/1818 (3%)
Query: 23 GIGFSNTIHSEVAPCLPLPSLPVFCGATDPNLRLFDEASAGVS-YRLLNRTEILTQSSRI 81
GIG SN+IHSEVAPCLPLPSLPVFCGA+DP LRLFD ASA S + LNR EIL+QSSRI
Sbjct: 17 GIGLSNSIHSEVAPCLPLPSLPVFCGASDPELRLFDGASARNSNFWFLNRNEILSQSSRI 76
Query: 82 ADLLRVTDVSYLNLRDEAKPDPYSDMEPLELHNQVLQYNAEAFEYVTPGKQSHIKEQVSG 141
ADLLR TDVSYL LRDE + ++E LEL+ +VL+ N +AFEYVT H K Q+SG
Sbjct: 77 ADLLRQTDVSYLTLRDENRETTSDNVERLELYEEVLRCNPDAFEYVT-----HGKGQISG 131
Query: 142 GESFERKDREPSILGASGLQRDYIG-----------DVSTSSSRKPKIKKKGGDNISSSA 190
+FE K E S+ + QRDY G D++ SS RKPK+KKKG D+IS+
Sbjct: 132 NAAFESKRIELSVPVSFQAQRDYDGFQNHQPKYTPNDIA-SSLRKPKVKKKGSDDISAVI 190
Query: 191 QPDPIEVQ----DATIMNFCEMLEDFCGRAEIPTDDQNDTELLSLPVADVRIVVNEIMSL 246
QPDP E+Q DATI +FC+MLEDFCGRAE+P DD+ + E LSLP AD+R +VNEI SL
Sbjct: 191 QPDPAELQGRATDATIGSFCDMLEDFCGRAEVPGDDREEAEWLSLPAADLRKLVNEITSL 250
Query: 247 RAKKLLHLVSVDILVRLLRVLDHQIHRAEGLSVDEREHLDSDRVSMVFCALESIHAALAV 306
RAKKLL+L+ V++LVRLLRVLDHQIHRAEGLS+DE EH DS+ VS VFCALESIHAALAV
Sbjct: 251 RAKKLLNLIPVEVLVRLLRVLDHQIHRAEGLSIDECEHSDSEVVSYVFCALESIHAALAV 310
Query: 307 MAHDHMPKQLYKEEIIERVLEFSRHQITDVMSAYDPSYRALHKTSESAALEVDEDEEVDA 366
MAH++MPKQLYKEEIIER+LEFS+HQI DVMSAYDPSYRALH+ SE+ A E EDEE D
Sbjct: 311 MAHNNMPKQLYKEEIIERILEFSKHQIMDVMSAYDPSYRALHRPSENGAPEGYEDEEPDP 370
Query: 367 DLGSASKRRRTMKNVKVKRSAFNRVSGAVNSILQKLCTILGLLKDLLLIERLSDSCILQL 426
D GSA+K+RRT+K+V+VK+S+ NRVSGAVN+ILQKLCTILGLLKDLLLIERLSDSCILQL
Sbjct: 371 DYGSANKKRRTVKSVRVKKSSSNRVSGAVNTILQKLCTILGLLKDLLLIERLSDSCILQL 430
Query: 427 VKTSFTTFLVDNVQLLQLKAIGLLSAIFYSYTQHRTYVIDEILLLLWKLPSTKRALRTYH 486
V+TSFTTFLVDN+QLLQ+KAIGL+ IFYSY QHR Y+IDEI+ LLWKLPS+KRALR YH
Sbjct: 431 VRTSFTTFLVDNIQLLQMKAIGLICGIFYSYIQHRPYIIDEIVQLLWKLPSSKRALRAYH 490
Query: 487 LPDEEQRQIQMVTALLIQLVHSSANLPEALRKATSGSTILEVQIDSSYPTKCHEAATDTC 546
LPDEEQRQIQMVTALLIQLV SSANLP+ALR+A+SG++ILEV +D+SYP K HEAAT+TC
Sbjct: 491 LPDEEQRQIQMVTALLIQLVQSSANLPDALRQASSGNSILEVSLDASYPIKSHEAATETC 550
Query: 547 CLFWTRVLQRFTSVKAQDASELKVMMENLVMDLLTTLNLPEYPASAPILEVLCVLLLQNA 606
CLFWTRVLQRFT+VK QDASELKVMMENLV DLLTTLNLPEYP+S+PILE NA
Sbjct: 551 CLFWTRVLQRFTTVKNQDASELKVMMENLVTDLLTTLNLPEYPSSSPILE--------NA 602
Query: 607 GPKSKDVSARSMAIDLLGTIAARLKQEAVLCGRERFWMLQELVREDSSDQSYPKDLCCVC 666
G KSKDVSARSMAID LGTIAARLKQ+A++C +FW+LQEL D D S+PKD CCVC
Sbjct: 603 GLKSKDVSARSMAIDFLGTIAARLKQDALICSGNKFWILQELSCGDDVDLSFPKDACCVC 662
Query: 667 LDGRVEKRVFMCQGCQRLFHADCLGVREHEVPNRGWNCQLCLCRNQLLVLQSYCKSHCKG 726
LDGRVE R+FMC GC+RLFHADC+GVREHE PNR W+C +CLC+NQLLVLQSY SH K
Sbjct: 663 LDGRVENRLFMCPGCRRLFHADCMGVREHEAPNRSWHCMICLCKNQLLVLQSYSDSHYKD 722
Query: 727 DINKSHSRSESNPETSDTITKLEIVQQMLLNYLQDAVSADEMNLFVRWFYVCLWYKDDPE 786
+ K + RS++N + SDT+TK EIVQQMLLNYLQD VSAD+ LFVRWFY+CLWYKDDP+
Sbjct: 723 EEKKDNIRSKNNSDASDTVTKAEIVQQMLLNYLQDVVSADDAYLFVRWFYLCLWYKDDPK 782
Query: 787 AQQKSMYYLARLKSKEIVRESGTISLSLTRDTVKKITLALGQNNSFSRGFDKILHLLLVS 846
++QK MY+L RLKS IVR+SGT LTRD+VKKI LALGQN+SF RGFDKILH+LL S
Sbjct: 783 SKQKFMYHLTRLKSNLIVRDSGTAFSLLTRDSVKKIALALGQNSSFCRGFDKILHMLLAS 842
Query: 847 LRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLA-GIL 905
LRENSP+IRAKALRAVSIIVE DP+VL DKRVQLAVEGRFCDSAISVREAALEL+ I
Sbjct: 843 LRENSPVIRAKALRAVSIIVEADPDVLRDKRVQLAVEGRFCDSAISVREAALELVGRHIA 902
Query: 906 LH--ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDE 963
H + + YF KVAERIKDTGVSVRKRAIKIIRDMC SN NFT+ TTACIEIISRV+DDE
Sbjct: 903 SHPDVGLQYFEKVAERIKDTGVSVRKRAIKIIRDMCISNPNFTQFTTACIEIISRVSDDE 962
Query: 964 SSIQDLVCKTFYEFWFEEPSGLQTQYFGDGSSVPLEVAKKTEQIVEMSRGLPNHQLLVTV 1023
SSIQDLVCKTFYEFWFEEPSGL+TQ+FGDGSSVPLEVAKKTEQIVEM R +P+HQLLVTV
Sbjct: 963 SSIQDLVCKTFYEFWFEEPSGLRTQFFGDGSSVPLEVAKKTEQIVEMLRRMPSHQLLVTV 1022
Query: 1024 IKRNLALDFFPQSAKAAGINPMSLASVRRRCELMCKCLLERILQVEEMNNEGMEMRTLPY 1083
IKRNLALDFFPQSAKA GINP+SLASVR+RCELMCKCLLERILQVEEMN++ +E+ TLPY
Sbjct: 1023 IKRNLALDFFPQSAKAVGINPVSLASVRKRCELMCKCLLERILQVEEMNSDEVELCTLPY 1082
Query: 1084 VLVLHAFCVVDPTLCAPVSDPSQFVITLQPYLKSQVDNRVVAKFLESVIFIIDA------ 1137
VL LHAFCVVDPTLCAP SDPSQFV+TLQPYLKSQVD+R +A+ LES+IFIID+
Sbjct: 1083 VLALHAFCVVDPTLCAPASDPSQFVVTLQPYLKSQVDDRAIAQLLESIIFIIDSVLPLIR 1142
Query: 1138 -LPSSVIEELEQDLKHMIVRHSFLTVVHACIKCLCSVSKISGKGLSTVEHLILVFFKYLD 1196
LP SV+EELEQDLK MIVRHSFLTVVHACIKCLCS+SK++ KG S VE+LI VFFK LD
Sbjct: 1143 KLPQSVVEELEQDLKQMIVRHSFLTVVHACIKCLCSLSKVAAKGASVVEYLIQVFFKRLD 1202
Query: 1197 SHNPDSKQVVGRSLFCLGLLIRYGSSLLTTSYEKNIDIVSNLNLFKRYLRMEDFSVKVRS 1256
+ D+KQ+ GRSLFCLGLLIRYG+SLL+ S KNID+ S+L+LFK++L MEDF +KVRS
Sbjct: 1203 AQGIDNKQLAGRSLFCLGLLIRYGNSLLSISNNKNIDVASSLSLFKKHLLMEDFGIKVRS 1262
Query: 1257 LQALGFVLIARPEHMLEKDIGKILEATLADSSHIRLKMQALQNLYEYLLDAENQMETDKG 1316
LQALGFVLIARPE MLEKDIGKILEATL+ SH+RLKMQALQN++EYLLDAE+QM+TDK
Sbjct: 1263 LQALGFVLIARPEFMLEKDIGKILEATLSSGSHVRLKMQALQNMHEYLLDAESQMDTDK- 1321
Query: 1317 SGNEVEYTVEDGHSVPVAAGAGDTNICGGIIQLYWDKILGRCLDANEEVRQTALKIVEVV 1376
+ + + VE +SVPVAAGAGDTNICGGI+QLYWD ILGRCLD NE+VRQTALKIVEVV
Sbjct: 1322 TNSVAHHPVEGSNSVPVAAGAGDTNICGGIVQLYWDHILGRCLDFNEQVRQTALKIVEVV 1381
Query: 1377 LRQGLVHPITCVPYLIALETDPQEVNSKLAHHLLMNMNEKYPAFFESRLGDGLQMSFVFI 1436
LRQGLVHPITCVPYLIALETDPQE+NSKLAHHLLMNMNEKYPAFFESRLGDGLQ+SF+F+
Sbjct: 1382 LRQGLVHPITCVPYLIALETDPQELNSKLAHHLLMNMNEKYPAFFESRLGDGLQLSFIFM 1441
Query: 1437 QSIGGGSSECRNQKFQSKAAGTMKGKSDGSSLTQARLGVSQIYKLIRGNRNSRNKFMSSI 1496
+SI S E NQK QSK AG +KGK +G SL+QARLGVS+IYKLIRGNR SRNKFMSSI
Sbjct: 1442 KSIVNISPEIPNQKLQSKTAGNLKGKPEGGSLSQARLGVSRIYKLIRGNRVSRNKFMSSI 1501
Query: 1497 VRKFDNPSCSDLVIPFLMYCTEVLALLPFSSPDEPLYLIYTINRVIQVRAGALEANMKAM 1556
VRKFDNPS SD VIPFL+YCTE+LALLPF+ PDEPLYLIY INRVIQVRAGALEANMK +
Sbjct: 1502 VRKFDNPSRSDSVIPFLVYCTEMLALLPFTLPDEPLYLIYVINRVIQVRAGALEANMKGL 1561
Query: 1557 STHLLQRDAQKTTYENGMVDQESAEPVFNHMTSMDLNGTIKEEPAAQPIFYHMSSIDLNG 1616
H QR+A + EN + +E EPV +HM D+NGTI+ +P QP + S DLNG
Sbjct: 1562 ILHFSQRNA-RMVNENRFIQRELVEPVSHHM---DMNGTIQPKPDGQPDHSPLRSFDLNG 1617
Query: 1617 TVQPEPNDQPLLHRMPPLEAKVHVMSSGEPRDIPKDDLQKVQ-------------VDCIS 1663
TVQ +P D +L+ K+ +SSGE I KDD++K+Q VDC++
Sbjct: 1618 TVQEQPADHAVLNSSVSRYPKMERVSSGESVGISKDDVEKIQYCFSFLFLWVVTQVDCLA 1677
Query: 1664 ATALQLLLKLKRYLKIVYGLNDARCQAYSPSEPQKPGEPLTKQNIPFDISDTRVALPSTY 1723
ATAL+LLLKLKR+LKIVYGLNDARCQA+SP+EP KPGE ++QNIPFD+S T +LPSTY
Sbjct: 1678 ATALELLLKLKRHLKIVYGLNDARCQAFSPTEPPKPGEAFSRQNIPFDMSQTGTSLPSTY 1737
Query: 1724 EDLMQKYQEFKNALKEDTVDYAVYTANIKRKRPAPRKGVRYGRIIGGDDDEDYSDEEWGG 1783
+DL+Q+YQEFK ALKEDTVDY+ YTANIKRKRPAPRK V+ GR++G D++D D++W
Sbjct: 1738 QDLVQRYQEFKGALKEDTVDYSTYTANIKRKRPAPRK-VKSGRVMGD-DEDDDEDDDWAS 1795
Query: 1784 GARKLSNSGRKSYSCRRR 1801
G R+ SGRK S R R
Sbjct: 1796 GGRR-PGSGRKGNSSRSR 1812
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296082998|emb|CBI22299.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|255570280|ref|XP_002526100.1| pearli, putative [Ricinus communis] gi|223534597|gb|EEF36294.1| pearli, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|449439037|ref|XP_004137294.1| PREDICTED: nipped-B-like protein-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|449483325|ref|XP_004156556.1| PREDICTED: LOW QUALITY PROTEIN: nipped-B-like protein-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|359489025|ref|XP_002279278.2| PREDICTED: nipped-B-like protein-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|297811695|ref|XP_002873731.1| sister chromatid cohesion 2 [Arabidopsis lyrata subsp. lyrata] gi|297319568|gb|EFH49990.1| sister chromatid cohesion 2 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|186523129|ref|NP_197058.2| cohesin loading factor subunit SCC2 [Arabidopsis thaliana] gi|146230097|gb|ABQ12620.1| sister chromatid cohesion 2 [Arabidopsis thaliana] gi|332004791|gb|AED92174.1| cohesin loading factor subunit SCC2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|334187704|ref|NP_001190317.1| cohesin loading factor subunit SCC2 [Arabidopsis thaliana] gi|332004792|gb|AED92175.1| cohesin loading factor subunit SCC2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|356551002|ref|XP_003543868.1| PREDICTED: nipped-B-like protein-like [Glycine max] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1801 | ||||||
| TAIR|locus:2180942 | 1846 | EMB2773 "EMBRYO DEFECTIVE 2773 | 0.908 | 0.886 | 0.617 | 0.0 | |
| UNIPROTKB|Q6KC79 | 2804 | NIPBL "Nipped-B-like protein" | 0.362 | 0.232 | 0.285 | 1.8e-99 | |
| ZFIN|ZDB-GENE-060526-121 | 2381 | nipbla "nipped-b homolog a (Dr | 0.348 | 0.263 | 0.292 | 2.8e-99 | |
| MGI|MGI:1913976 | 2798 | Nipbl "Nipped-B homolog (Droso | 0.362 | 0.233 | 0.283 | 6e-99 | |
| UNIPROTKB|E1BKC4 | 2804 | NIPBL "Uncharacterized protein | 0.360 | 0.231 | 0.284 | 5.6e-98 | |
| UNIPROTKB|B7PJJ7 | 2025 | IscW_ISCW005186 "Nipped-B prot | 0.360 | 0.320 | 0.262 | 7.6e-96 | |
| ZFIN|ZDB-GENE-030131-6070 | 2876 | nipblb "nipped-b homolog b (Dr | 0.360 | 0.226 | 0.288 | 3e-95 | |
| UNIPROTKB|Q1XG42 | 2949 | nipbl "Scc2-2B" [Xenopus laevi | 0.354 | 0.216 | 0.276 | 3e-93 | |
| UNIPROTKB|F1SN99 | 2810 | NIPBL "Uncharacterized protein | 0.389 | 0.249 | 0.272 | 6.7e-91 | |
| UNIPROTKB|Q1XG44 | 2932 | nipbl "Scc2-1B" [Xenopus laevi | 0.356 | 0.218 | 0.272 | 2.1e-89 |
| TAIR|locus:2180942 EMB2773 "EMBRYO DEFECTIVE 2773" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 5149 (1817.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 1033/1672 (61%), Positives = 1264/1672 (75%)
Query: 109 PLELHNQVLQYNAEAFEYVTPGKQ----SHIKEQVSGGESFERKDREPSILGASGLQRDY 164
P+++ Q + A + E P K+ +H+++ E+ ++ P + A + +
Sbjct: 149 PVKMQRQTDTHLARSIE-PEPVKRVLRPNHVEDHSWQHETLT--NQSPKDVTAYDSRPET 205
Query: 165 IGDVSTSSSRKPKIKKKGGDNISSSAQPDPIEVQDATIMNFCEMLEDFCGRAEIPTDDQN 224
I S+S+KPK KKK D++SS QPDP +Q++ + NFCEMLEDFCGRAE+P DD++
Sbjct: 206 ITMNELSASKKPKGKKKRKDDLSS-VQPDPSVLQESIVQNFCEMLEDFCGRAEVPGDDRD 264
Query: 225 DTELLSLPVADVRIVVNEIMSLRAKKLLHXXXXXXXXXXXXXXXHQIHRAEGLSVDEREH 284
+ E S+PV +VR+++NE+M++R+K LLH HQIHRAEGLS+ EH
Sbjct: 265 EAEWSSVPVDEVRVLINELMTIRSKMLLHMVPVDILSRLLRTLDHQIHRAEGLSIYS-EH 323
Query: 285 LDSDRVSMVFCALESIHAALAVMAHDHMPKQLYKEEIIERVLEFSRHQITDVMSAYDPSY 344
DSD V +V ALESIHA+LAVMA+ MPKQLYKEEIIER+LEFSRHQ+ VMSAYDPSY
Sbjct: 324 SDSDSVLLVLGALESIHASLAVMANSDMPKQLYKEEIIERILEFSRHQMMAVMSAYDPSY 383
Query: 345 RALHKTXXXXXXXXXXXXXX-XXXXGSASKRRRTMKNVKVKRSAFNRVSGAVNSILQKXX 403
R K GSASKRRR +KN KVK+++ NR+SGAVN+ LQK
Sbjct: 384 RTGSKPAENLAFEGDDDDDNPDHDMGSASKRRRIVKNSKVKKASVNRISGAVNTALQKLC 443
Query: 404 XXXXXXXXXXXXXXXSDSCILQLVKTSFTTFLVDNVQLLQLKAIGLLSAIFYSYTQHRTY 463
SDSCILQL+KTS TTFLV+N+Q+LQLKAI L+ I+ SY+QHRTY
Sbjct: 444 TILGLLKDLLLVERLSDSCILQLLKTSITTFLVENIQILQLKAISLIGGIYNSYSQHRTY 503
Query: 464 VIDEILLLLWKLPSTKRALRTYHLPDEEQRQIQMVTALLIQLVHSSANLPEALRKATSGS 523
VIDEI LLWKLPS+KRALR Y LPDEEQRQIQMVTALLIQLVH+S +LPE R+A SG+
Sbjct: 504 VIDEISQLLWKLPSSKRALRAYLLPDEEQRQIQMVTALLIQLVHNSTSLPETSRQAASGN 563
Query: 524 TILEVQIDSSYPTKCHEAATDTCCLFWTRVLQRFTSVKAQDASELKVMMENLVMDLLTTL 583
+ILE +D Y TKCHEAAT+TCCLFWTRVL+RFTS K QDASE+K+++ENLVMDLLT L
Sbjct: 564 SILETSVDVGYLTKCHEAATETCCLFWTRVLERFTSFKGQDASEIKLIIENLVMDLLTAL 623
Query: 584 NLPEYPASAPILEVLCVLLLQNAGPKSKDVSARSMAIDLLGTIAARLKQEAVLCGRERFW 643
NLPEYP+ +PILEVLCV+LL NAG KSKDVSAR MAI+LLGTIAARLK++AVLC ++RFW
Sbjct: 624 NLPEYPSVSPILEVLCVILLHNAGLKSKDVSARIMAIELLGTIAARLKRDAVLCSKDRFW 683
Query: 644 MLQELVREDSSDQSYPKDLCCVCLDGRVEKRVFMCQGCQRLFHADCLGVREHEVPNRGWN 703
L E E S DQ KD C CL G+ + +CQ CQR FH DCLG++E ++ +R W+
Sbjct: 684 TLLESDSEISVDQVCTKD-CTFCL-GKRAGNLLVCQICQRRFHGDCLGLKELDISSRNWH 741
Query: 704 XXXXXXXXXXXXXXSYCKSHCKGDINKSHSRSESNPETSDTITKLEIVQQMLLNYLQDAV 763
SYCK+ KG SE + E ITK E+VQQMLLNYLQD
Sbjct: 742 CPLCVCKRQLLVLQSYCKTDTKGT---GKLESEESIENPSMITKTEVVQQMLLNYLQDVG 798
Query: 764 SADEMNLFVRWFYVCLWYKDDPEAQQKSMYYLARLKSKEIVRESGTISLSLTRDTVKKIT 823
SAD+++ F+ WFY+CLWYKD P++Q K YY+ARLK+K I+R SG + LTRD +K+IT
Sbjct: 799 SADDVHTFICWFYLCLWYKDVPKSQNKFKYYIARLKAKSIIRNSGATTSFLTRDAIKQIT 858
Query: 824 LALGQNNSFSRGFDKILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVE 883
LALG N+SFSRGFDKIL++LL SLREN+P IRAKALRAVSIIVE DPEVLCDKRVQLAVE
Sbjct: 859 LALGMNSSFSRGFDKILNMLLASLRENAPNIRAKALRAVSIIVEADPEVLCDKRVQLAVE 918
Query: 884 GRFCDSAISVRXXXXXXXXXXXXXX---XXXYFVKVAERIKDTGVSVRKRAIKIIRDMCT 940
GRFCDSAISVR YF KVAERIKDTGVSVRKRAIKIIRDMCT
Sbjct: 919 GRFCDSAISVREAALELVGRHIASHPDVGIKYFEKVAERIKDTGVSVRKRAIKIIRDMCT 978
Query: 941 SNTNFTESTTACIEIISRVNDDESSIQDLVCKTFYEFWFEEPSGLQTQYFGDGSSVPLEV 1000
SN NF+E T+AC EI+SR++DDESS+QDLVCKTFYEFWFEEP G TQ+ D SS+PLE+
Sbjct: 979 SNPNFSEFTSACAEILSRISDDESSVQDLVCKTFYEFWFEEPPGHHTQFASDASSIPLEL 1038
Query: 1001 AKKTEQIVEMSRGLPNHQLLVTVIKRNLALDFFPQSAKAAGINPMSLASVRRRCELMCKC 1060
KKT+Q+V + PN QLLVT+IKR LALDFFPQ+AKAAGINP++LASVRRRCELMCKC
Sbjct: 1039 EKKTKQMVGLLSRTPNQQLLVTIIKRALALDFFPQAAKAAGINPVALASVRRRCELMCKC 1098
Query: 1061 LLERILQVEEMNNEGMEMRTLPYVLVLHAFCVVDPTLCAPVSDPSQFVITLQPYLKSQVD 1120
LLE+ILQVEEM+ E E++ LPYVLVLHAFC+VDP LC P SDP++FVITLQPYLKSQ D
Sbjct: 1099 LLEKILQVEEMSREEGEVQVLPYVLVLHAFCLVDPGLCTPASDPTKFVITLQPYLKSQAD 1158
Query: 1121 NRVVAKFLESVIFIIDA-------LPSSVIEELEQDLKHMIVRHSFLTVVHACIKCLCSV 1173
+R A+ LES+IFIID+ LP SV E+LEQDLKHMIVRHSFLTVVHAC++CLCSV
Sbjct: 1159 SRTGAQLLESIIFIIDSVLPLIRKLPLSVTEDLEQDLKHMIVRHSFLTVVHACVRCLCSV 1218
Query: 1174 SKISGKGLSTVEHLILVFFKYLDSHNPDSKQVVGRSLFCLGLLIRYGSSLLTTSYEKNID 1233
SK++GKG+S VEHL+ FFK L++ D+ Q+ GRSLFCLGLLIR+G+SL++TS KN +
Sbjct: 1219 SKLAGKGVSIVEHLLQFFFKRLEAQGSDNTQIAGRSLFCLGLLIRHGNSLISTSGGKNFN 1278
Query: 1234 IVSNLNLFKRYLRMEDFSVKVRSLQALGFVLIARPEHMLEKDIGKILEATLADSSHIRLK 1293
+ LNLFKR+LR ED ++KVRSLQALGF+LIARPE+MLE+DIGKI+E TLAD ++ R+K
Sbjct: 1279 LSGCLNLFKRHLRTEDIALKVRSLQALGFILIARPEYMLEEDIGKIIETTLADEANGRMK 1338
Query: 1294 MQALQNLYEYLLDAENQMETDKGSGNEVEYTVEDGHSVPVAAGAGDTNICGGIIQLYWDK 1353
MQALQN+YEYLLDAE Q+ ++K S N V + GH+VPVAAGAGDTNICGGI+QL+WDK
Sbjct: 1339 MQALQNMYEYLLDAEKQLGSEKASDNTVNSVEQGGHNVPVAAGAGDTNICGGIVQLFWDK 1398
Query: 1354 ILGRCLDANEEVRQTALKIVEVVLRQGLVHPITCVPYLIALETDPQEVNSKLAHHLLMNM 1413
ILGRCLD ++++RQT+LKIVEVVLRQGLVHPITCVPYLIALETDPQE N KLAHHLLMNM
Sbjct: 1399 ILGRCLDFDDQIRQTSLKIVEVVLRQGLVHPITCVPYLIALETDPQEANQKLAHHLLMNM 1458
Query: 1414 NEKYPAFFESRLGDGLQMSFVFIQSIGGGSSECRNQKFQSKAAGTMKGKSD--GSSLTQA 1471
+EKYPAFFESRLGDGLQMSF+F+QSI +SE NQ Q K + M GK+D S+LTQA
Sbjct: 1459 HEKYPAFFESRLGDGLQMSFIFMQSISQVTSE-PNQSLQQKGSTNMLGKNDHASSTLTQA 1517
Query: 1472 RLGVSQIYKLIRGNRNSRNKFMSSIVRKFDNPSCSDLVIPFLMYCTEVLALLPFSSPDEP 1531
RLGVS+IYKLIRGNR SRNKFM+SIVRKFDNP+ + VI FL YCTE LALLPF+SPDEP
Sbjct: 1518 RLGVSRIYKLIRGNRVSRNKFMTSIVRKFDNPTWNGSVISFLKYCTETLALLPFTSPDEP 1577
Query: 1532 LYLIYTINRVIQVRAGALEANMKAMSTHLLQRDAQKTTYENGMVDQESAEPVFNHMTSMD 1591
LYL+Y+INRV+Q+RAGA+E+N+KA LL +D+ KT + NG Q+ P+ HM MD
Sbjct: 1578 LYLVYSINRVMQIRAGAVESNLKA----LLHKDSAKTQHGNGAYQQD---PIPGHMNMMD 1630
Query: 1592 LNGTIKEEPAAQPIFYHMSSIDLNGTVQPEPNDQPLLHRMPPLEAKVHVMSSGEPRDIPK 1651
LN I+EEP + H + IDLNG+V + DQ +++ +A VH M+S +P ++
Sbjct: 1631 LNTRIQEEPRHWNSYGHATLIDLNGSVYQDSRDQFTSYQVHNGKADVHKMTSSDPPELST 1690
Query: 1652 DDLQKVQVDCISATAXXXXXXXXXXXXIVYGLNDARCQAYSPSEPQKPGEPLTKQNIPFD 1711
DDLQK+QVDC++A A + Y LND RCQAYSP+EP KPG+PL++Q++ FD
Sbjct: 1691 DDLQKIQVDCLAAIAIQLLLKLKRYLKVTYSLNDDRCQAYSPTEPLKPGDPLSRQSVAFD 1750
Query: 1712 ISDTRVALPSTYEDLMQKYQEFKNALKEDTVDYAVYTANIKRKRPAPRKGVR 1763
+S+TR LPSTY+DL+Q+YQEFKNA++EDTVD+ +Y+ N+KRKRP PRK R
Sbjct: 1751 LSETRTDLPSTYQDLVQRYQEFKNAMREDTVDFTIYSTNVKRKRPTPRKTSR 1802
|
|
| UNIPROTKB|Q6KC79 NIPBL "Nipped-B-like protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-060526-121 nipbla "nipped-b homolog a (Drosophila)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1913976 Nipbl "Nipped-B homolog (Drosophila)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1BKC4 NIPBL "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|B7PJJ7 IscW_ISCW005186 "Nipped-B protein, putative" [Ixodes scapularis (taxid:6945)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-030131-6070 nipblb "nipped-b homolog b (Drosophila)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q1XG42 nipbl "Scc2-2B" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1SN99 NIPBL "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q1XG44 nipbl "Scc2-1B" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
 |
 |
 |
 |
 |
 |
 |
 |
 |
 | eugene3.00170480 | hypothetical protein (1815 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1801 | |||
| pfam12830 | 187 | pfam12830, Nipped-B_C, Sister chromatid cohesion C | 4e-58 | |
| pfam12765 | 42 | pfam12765, Cohesin_HEAT, HEAT repeat associated wi | 8e-10 | |
| smart00249 | 47 | smart00249, PHD, PHD zinc finger | 1e-06 | |
| pfam00628 | 51 | pfam00628, PHD, PHD-finger | 5e-06 | |
| pfam13831 | 33 | pfam13831, PHD_2, PHD-finger | 0.002 |
| >gnl|CDD|221797 pfam12830, Nipped-B_C, Sister chromatid cohesion C-terminus | Back alignment and domain information |
|---|
Score = 198 bits (506), Expect = 4e-58
Identities = 65/207 (31%), Positives = 117/207 (56%), Gaps = 26/207 (12%)
Query: 1342 ICGGIIQLYWDKILGRCLDANEEVRQTALKIVEVVLRQGLVHPITCVPYLIALETDPQEV 1401
+ ++Q Y IL CL +N++VR AL+++E++LRQGLV+P CVP LIALETDP +
Sbjct: 1 VASSLVQRYLKDILELCLSSNDKVRLLALELLELILRQGLVNPKECVPTLIALETDPNPL 60
Query: 1402 NSKLAHHLLMNMNEKYPAFFESRLGDGLQMSFVFIQSIGGGSSECRNQKFQSKAAGTMKG 1461
LA LL ++EK+ + +SR +G++++F + + +
Sbjct: 61 IRSLALALLKELHEKHESLVDSRYSEGVKLAFDYQRRLS--------------------S 100
Query: 1462 KSDGSSLTQARLGVSQIYKLIRGNRNSRNKFMSSIVRKFDNPS------CSDLVIPFLMY 1515
G++ +S +Y L+R N+ SR KF+ S+++ FD+ + + FL++
Sbjct: 101 DPRGAARGPGSAFLSSLYTLLRSNKKSRKKFLKSLLKLFDDDLYKLDEESAPSDLNFLLF 160
Query: 1516 CTEVLALLPFSSPDEPLYLIYTINRVI 1542
E LALLP+++ +E L++I+ ++R++
Sbjct: 161 LAENLALLPYTTQEEVLFVIHHLDRIV 187
|
This domain lies towards the C-terminus of nipped-B or sister chromatid cohesion proteins. Length = 187 |
| >gnl|CDD|205062 pfam12765, Cohesin_HEAT, HEAT repeat associated with sister chromatid cohesion | Back alignment and domain information |
|---|
| >gnl|CDD|214584 smart00249, PHD, PHD zinc finger | Back alignment and domain information |
|---|
| >gnl|CDD|201356 pfam00628, PHD, PHD-finger | Back alignment and domain information |
|---|
| >gnl|CDD|222406 pfam13831, PHD_2, PHD-finger | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1801 | |||
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 100.0 | |
| PF12830 | 187 | Nipped-B_C: Sister chromatid cohesion C-terminus | 100.0 | |
| KOG0413 | 1529 | consensus Uncharacterized conserved protein relate | 99.63 | |
| PF12765 | 42 | Cohesin_HEAT: HEAT repeat associated with sister c | 98.88 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 98.5 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 98.29 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 98.2 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 97.98 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 97.71 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 97.62 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 97.61 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 97.53 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 97.19 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 96.64 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 96.62 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 96.61 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 96.35 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 96.02 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 95.97 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 95.92 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 95.91 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 95.75 | |
| PRK09687 | 280 | putative lyase; Provisional | 95.29 | |
| KOG1525 | 1266 | consensus Sister chromatid cohesion complex Cohesi | 95.28 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 95.27 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 95.19 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 94.63 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 94.54 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 94.37 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 94.37 | |
| PRK09687 | 280 | putative lyase; Provisional | 94.29 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 93.63 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 93.55 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 93.18 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 93.06 | |
| COG5098 | 1128 | Chromosome condensation complex Condensin, subunit | 92.99 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 92.88 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 92.7 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 92.52 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 90.42 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 89.94 | |
| KOG2011 | 1048 | consensus Sister chromatid cohesion complex Cohesi | 89.88 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 88.95 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 88.87 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 88.19 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 87.59 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 87.47 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 86.66 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 86.27 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 85.39 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 84.91 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 84.76 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 84.56 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 82.49 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 82.45 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 81.4 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 81.2 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 80.55 |
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-240 Score=2244.41 Aligned_cols=1559 Identities=31% Similarity=0.439 Sum_probs=1258.8
Q ss_pred CCCCCCCCCCCccccc-ccccccccccCCCCCCCCCcccCCCCCCc-cccccccccchhhccchHHHHHhhHHHHHHhhh
Q 047845 10 SGSGSGLGSTGQWGIG-FSNTIHSEVAPCLPLPSLPVFCGATDPNL-RLFDEASAGVSYRLLNRTEILTQSSRIADLLRV 87 (1801)
Q Consensus 10 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (1801)
.|.+|+++...-.++| ..|++-+|..+.+|+|++|++||..++.+ ..||+..... ...|+++-.++.++|+|+..
T Consensus 7 ~~~~s~~~~e~f~~v~~~~~~r~~~~l~~~pls~l~p~~~l~~~~l~~~~d~~~~~s---~~~~se~~~i~q~~~n~l~~ 83 (1692)
T KOG1020|consen 7 DRGESSETLESFSRVNKPETLRIIEALEYLPLSSLVPTDGLAQNVLAPSFDSLERPS---SQDRSEADDISQRNANMLHP 83 (1692)
T ss_pred cccccccchhhhcccCCCCcccccccccCCcccccccchhhhhhcccccccccCCcc---cccchhhhHHHHHHHhhcCc
Confidence 3445555444455588 89999999999999999999999999965 8999988877 48999999999999999999
Q ss_pred cCcccccccccCCCCCCCCCCchhhHHHHhhcCccccccccCCCCcccc--c-------------cccCC---Ccccccc
Q 047845 88 TDVSYLNLRDEAKPDPYSDMEPLELHNQVLQYNAEAFEYVTPGKQSHIK--E-------------QVSGG---ESFERKD 149 (1801)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------------~~~~~---~~~~~~~ 149 (1801)
|++.+++++.|+......+.+|...|+-++.++|..++|++|++|.-++ + .++.+ ..+..++
T Consensus 84 ~~~~~~~~~~~~~~~d~~s~~psn~~~L~~~~~p~~v~~v~p~~t~~p~~~ne~~~s~ln~~i~s~~s~~~~m~~st~~~ 163 (1692)
T KOG1020|consen 84 TNKTTLDLENEAEKEDLNSAEPSNPLDLKLTSIPNIVDYVSPNFTQGPLVCNESPLSELNDLIQSLISTHVGMSRSTNKP 163 (1692)
T ss_pred hhhhhhhhhhhhhhhhhcccCCCccccccccCCcccccccCCCCCccchhcccChHHHHHHHHHHhccchhhhcccccCC
Confidence 9999999999999999999999999999999999999999888865522 1 11111 1122222
Q ss_pred --------CCCccc-----ccCCCCC----ccC--CCccC-----------------CCCCcccccccCCCCCCCCCCCC
Q 047845 150 --------REPSIL-----GASGLQR----DYI--GDVST-----------------SSSRKPKIKKKGGDNISSSAQPD 193 (1801)
Q Consensus 150 --------~~~~~~-----~~~~~~~----~~~--~~~~~-----------------~~~~k~k~~~~~~~~~~~~~~~~ 193 (1801)
++.+-+ +..+.|+ ... .|.+| ..++++|-+|+..++... .+|+
T Consensus 164 ~~~s~~~s~~~~r~pel~~~~~~~~~sc~~~~~n~~N~sP~~~ka~~s~~~~~~~~~~~e~~e~d~K~r~~~~~e-~qp~ 242 (1692)
T KOG1020|consen 164 DAGSIKTSIEKSRNPELLRSLESVQPSCQRVSENTDNSSPKKSKASDSTPTKKTDEKLAEQYEKDLKRRKPDDSE-IQPD 242 (1692)
T ss_pred CcCcccccccccCChhhcCCCCcCChhHHHhhhhccccCCccccccCCCccccchhhhhhhhhccccccCccccc-cCcc
Confidence 111111 1111111 011 12222 111122222223333332 6677
Q ss_pred h-----hHHHHHHHHHHHHHHHHhhcCCC-CCCCccCccccccCChHHHHHHHHHHHHHHhhhccccCCHHHHHHHHHHH
Q 047845 194 P-----IEVQDATIMNFCEMLEDFCGRAE-IPTDDQNDTELLSLPVADVRIVVNEIMSLRAKKLLHLVSVDILVRLLRVL 267 (1801)
Q Consensus 194 ~-----~~~~~~~~~~~~~~l~~i~~~~~-~~~~d~~~~~~~~l~~~~l~~l~~e~~~l~~~~~l~~Ip~d~L~rLl~ll 267 (1801)
| .-+...++++||..+|+|++..| .++.|+++++|+.|+.+.|++|..+.++++.+|+++.||.|+|+||++++
T Consensus 243 ~~~~~~~l~d~~tf~~f~~~ieni~~~le~s~~~d~e~~~~~~i~~~~l~~L~~~~aki~~~~ald~l~~dkl~~Ll~~l 322 (1692)
T KOG1020|consen 243 QDVLEEELLDSSTFQQFCAEIENIEDWLENSPFFDREIDDKLVISSHCLEKLQMELAKIRANGALDKLPIDKLLRLLNVL 322 (1692)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhHHHHHhcCCCCCccccccccccHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHHHH
Confidence 7 33445899999999999998776 56677778899999999999999999999999999999999999999999
Q ss_pred HHHHHh---h-cCCCcccccC-CChhHHHHHHHHHHHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHHhhc-cccccC
Q 047845 268 DHQIHR---A-EGLSVDEREH-LDSDRVSMVFCALESIHAALAVMAHDHMPKQLYKEEIIERVLEFSRHQITD-VMSAYD 341 (1801)
Q Consensus 268 e~~I~~---a-~~l~~~~~e~-~~~~~~~~v~~al~a~~~aL~Imt~~~mpKqLy~Ed~Ie~~i~~~k~~l~~-ii~~~d 341 (1801)
++||++ + .+...+..+. ++++.+++|+.|++||+++++||++ +||||||.||+|++|++|+++++++ ++|+||
T Consensus 323 ~~nI~~~l~~~~~~~~~~ed~l~dd~~le~vl~asdavl~~inim~s-~m~kql~~Ed~I~ril~ft~~~l~~ti~pa~D 401 (1692)
T KOG1020|consen 323 DRNIKDELPRLLNSKIDLEDSLLDDSMLERVLKASDAVLFIINIMSS-NMPKQLYIEDVIERILNFTRFLLESTIYPAID 401 (1692)
T ss_pred HHHHHHhhhhhhcccccchhhhhccHHHHHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 999993 2 2333333333 6778889999999999999999999 9999999999999999999999999 567999
Q ss_pred hhhhhhcccccccccccCchhhhhhhcchhhhhhhhhccccccccccccchhhHHHHHHHHHHHHHhHHHHhccccCchh
Q 047845 342 PSYRALHKTSESAALEVDEDEEVDADLGSASKRRRTMKNVKVKRSAFNRVSGAVNSILQKLCTILGLLKDLLLIERLSDS 421 (1801)
Q Consensus 342 p~~~~~~~p~~~~~~~~~~~e~~~~~~g~~~k~rk~~~~~~~kk~~~~~~~~~v~~l~~kl~~~l~lLa~Ll~~~~LsDt 421 (1801)
|.|+....+. + .++++|+ +...+| .+.+..+|.++++.++++..++..+.++|+
T Consensus 402 piy~s~~~~~-----------------~-ts~~k~~-~~~~~~-------~r~~~~ly~kv~~~v~~~~~lv~~~~~~dt 455 (1692)
T KOG1020|consen 402 PIYRSKSSDA-----------------R-TSFRKKL-KLLPKK-------IRNGPFLYDKVAEEVTLLLVLVESDLLTDT 455 (1692)
T ss_pred chhhcccCCc-----------------c-hHHHHHH-hhhhHH-------hcchhHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 9998753221 1 2222222 122221 134568999999999999999999999999
Q ss_pred HHHHHHhhhcceEEecChhhHHHHHHHHHHHHHhcchhhHhHHHHHHHHhcccCCcCcccccccccCCcCCCchHHHHHH
Q 047845 422 CILQLVKTSFTTFLVDNVQLLQLKAIGLLSAIFYSYTQHRTYVIDEILLLLWKLPSTKRALRTYHLPDEEQRQIQMVTAL 501 (1801)
Q Consensus 422 ~I~~L~~~~~~~fFVeNv~~Lql~Am~LL~~IF~~yp~qR~~IidEILsSL~KLP~~Krs~R~fkL~dg~~~~IQ~vTAL 501 (1801)
.|+++.+++.+||||+|++.||.+|+.|+++||++||.||.+||+|+|+|++|||++||..|.|||++++ ++|||+|||
T Consensus 456 ~v~~~~s~~~tpffv~N~~slqi~~~~Lvs~ifs~yd~~R~siiee~lts~~rLPtsk~~lr~y~l~n~~-g~IqmvTaL 534 (1692)
T KOG1020|consen 456 DVHAVSSIAKTPFFVNNSSSLQISKAILVSTIFSRYDKQRGSIIEELLTSIERLPTSKRQLRNYRLSNQD-GSIQMVTAL 534 (1692)
T ss_pred cccccchhccccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHhhCchhhhhhhccccCCCC-CcEEehHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999985 579999999
Q ss_pred HHHHHHhccccchhhhhccCCCcccccccCCCCCccchhhhhhhHhHHHHHHHHHhccccCCCchhhHHHHHHHHHHHHh
Q 047845 502 LIQLVHSSANLPEALRKATSGSTILEVQIDSSYPTKCHEAATDTCCLFWTRVLQRFTSVKAQDASELKVMMENLVMDLLT 581 (1801)
Q Consensus 502 lmqLVQss~~~p~~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~~~f~~~~l~k~~stKs~d~~dyR~llenFVeDLLt 581 (1801)
++|||||+..+|...+...+++.......+..+..++|+.|.+++++||++||.||++ | +++++||+||||||||||+
T Consensus 535 fiqLiq~~~ilp~s~~~a~k~~~~~~~~~~~~~l~k~~e~a~~i~~~fl~~fL~rc~s-~-~~e~d~r~LfeNfvqDLLs 612 (1692)
T KOG1020|consen 535 FIQLIQSETILPYSFCDANKDEEALNSKLQENELTKSYEFAFRIANHFLTTFLERCFS-K-QGEEDYRILFENFVQDLLS 612 (1692)
T ss_pred HHHHHHHhhcCchhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c-CChhHHHHHHHHHHHHHHH
Confidence 9999999999998876655544333444445567899999999999999999999987 4 4556999999999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcCCCCCCCCcc
Q 047845 582 TLNLPEYPASAPILEVLCVLLLQNAGPKSKDVSARSMAIDLLGTIAARLKQEAVLCGRERFWMLQELVREDSSDQSYPKD 661 (1801)
Q Consensus 582 ~L~~PEWPAAElLL~~L~~~Lv~~~~~ks~d~~ar~~ALdlLG~IaA~L~~d~v~~s~~~~~~l~~l~~~~~~~~~~~~~ 661 (1801)
+|++|||||+|+||++||++||+++++|++++++|+|||||||+||||||+|.+.+ + |.. .+.+.
T Consensus 613 ~ln~PEWPatE~ILs~Lg~~Lv~~~s~ks~~~sir~asLdlLG~IaarLrkd~v~s---~---l~~----g~v~~----- 677 (1692)
T KOG1020|consen 613 ALNLPEWPATELILSLLGKLLVHNFSNKSVDVSIRTASLDLLGTIAARLRKDAVLS---K---LEQ----GSVDR----- 677 (1692)
T ss_pred HccCCcCccHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH---H---Hhh----ccchh-----
Confidence 99999999999999999999999999999999999999999999999999998864 1 100 11111
Q ss_pred ccccccccccchhhhhccccccccccccccccccCCCCCCcchh-hhhhhhhHHHHhhhhcccCCCCCCccCCCCCCCCC
Q 047845 662 LCCVCLDGRVEKRVFMCQGCQRLFHADCLGVREHEVPNRGWNCQ-LCLCRNQLLVLQSYCKSHCKGDINKSHSRSESNPE 740 (1801)
Q Consensus 662 l~~~~l~~~~~~lv~~~~g~~r~~~~~~l~~~~~e~~~~~w~~~-~c~~~~~l~~lq~y~~~~~~~~~k~~~~~~~~~s~ 740 (1801)
+.+.....|++. .|.+.++|+.+..++.......+.-.... +-
T Consensus 678 --------------------------------~~~~~s~~~~~~k~~~l~~~Lldfl~~~~~~~~~~~v~~~~f----yi 721 (1692)
T KOG1020|consen 678 --------------------------------ELDQDSEEKHNIKLIVLQKTLLDFLKSNTEETALSEVYACHF----YI 721 (1692)
T ss_pred --------------------------------hhhhcccccccchhhhhHHHHHHHHHHhhhccchhhHHHhhH----HH
Confidence 011122345554 66666677666655442211110000000 00
Q ss_pred Cch-hhhHHHHHHHHHHHHHHhhhcchhhhhhHHhhhhhhhccCCcHHHHHHHHHHHHhhhhhhhhc-ccccccccchhh
Q 047845 741 TSD-TITKLEIVQQMLLNYLQDAVSADEMNLFVRWFYVCLWYKDDPEAQQKSMYYLARLKSKEIVRE-SGTISLSLTRDT 818 (1801)
Q Consensus 741 ~~~-~~~~~~~lq~~ll~yl~~~~~~d~~~~~~r~f~~~~w~~d~~~~~~k~~y~~~~l~~~~i~~~-s~~~~~~ls~d~ 818 (1801)
... ...+++..+. .++..+.++++..+. ||+.+.||+.+...+.++.|++..++.+...+. .+.....++++.
T Consensus 722 ~~w~~d~~le~~~~--~~~~kd~~s~~~~~~---~~~~el~~~~v~~~~n~~K~~~~~Ik~~~~~~~~~~~~s~~~d~~~ 796 (1692)
T KOG1020|consen 722 AQWYRDTRLETILI--MEENKDVDSNEGTHH---WFSFELAYEKVITVENELKYILSKIKDKEKSGRGPKLNSRFADDDD 796 (1692)
T ss_pred HhHHHHHHHHHHHH--HHhccCccccccchh---HHHHHHHHHHHhhhHHHHHHHHHHhcchhhhccCcCCCCccccchh
Confidence 000 0011122222 222223444444433 999999999999999999999999988753332 334446789999
Q ss_pred HHHHHHhhhccchhhhhHHHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHH
Q 047845 819 VKKITLALGQNNSFSRGFDKILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAAL 898 (1801)
Q Consensus 819 ~~~i~~~l~~~~~f~~sFd~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAl 898 (1801)
+.+|+.+||+.|+|+++||+||++|+..|++++|++||||||||++|+|+||.||.+|+||.+|++|++|+|+|||||||
T Consensus 797 a~li~~~la~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAal 876 (1692)
T KOG1020|consen 797 AKLIVFYLAHARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAAL 876 (1692)
T ss_pred HHHHHHHHHhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-HHHH--HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHHHHHH
Q 047845 899 ELLAG-ILLH--ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVCKTFY 975 (1801)
Q Consensus 899 dLIGk-I~~~--L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~ 975 (1801)
||||| |+++ +..|||++|++||.||||+||||||||+||||.++|+|+++++||+|||+||+|||++|+|||++||+
T Consensus 877 dLvGrfvl~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~ 956 (1692)
T KOG1020|consen 877 DLVGRFVLSIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFL 956 (1692)
T ss_pred HHHhhhhhccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 99999 8877 99999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred hhccCCCCCCcccccCCCCCchHHHHHHHHHHHHHHhcC------CChhhHHHHHHHhhhcccCcchhhhhCCCcchhhH
Q 047845 976 EFWFEEPSGLQTQYFGDGSSVPLEVAKKTEQIVEMSRGL------PNHQLLVTVIKRNLALDFFPQSAKAAGINPMSLAS 1049 (1801)
Q Consensus 976 elWF~p~~~~~~~~~~d~ss~~~~~~~k~~~iv~vl~~~------~~~~~lv~~~k~~l~~d~l~~~~k~~~~~~~~~~~ 1049 (1801)
++||+|+++. .. ..+.++++..+++++... ...+++..++|..+. . ....+.++...+.
T Consensus 957 klWF~p~~~~-~d--------~~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~----~--~~~~~~~~v~~~~ 1021 (1692)
T KOG1020|consen 957 KLWFTPVPEV-ND--------QPAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLL----K--TMKESVKPVALAK 1021 (1692)
T ss_pred HHhccCCCcc-cc--------cHHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHh----h--hhhhhhhHHHHhh
Confidence 9999999864 22 234556666666655421 133455555554321 1 1223444556677
Q ss_pred HHHHHHHHHHHHHHHHHhhc--ccccccccccchhHHHHHHhhhccccCccCCCCCccchhhhhccccccccChH-----
Q 047845 1050 VRRRCELMCKCLLERILQVE--EMNNEGMEMRTLPYVLVLHAFCVVDPTLCAPVSDPSQFVITLQPYLKSQVDNR----- 1122 (1801)
Q Consensus 1050 v~~~c~~ivd~LVe~ll~le--e~~~~~~~~~~~~~l~~L~~Fak~~P~L~~~~~~~~~~i~~L~PYL~~~~~~~----- 1122 (1801)
+..+|+.+++||++.+.+++ ++..++.+++.++|++||++||+++|.||++ +|+++|+|||++.+++.
T Consensus 1022 v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~lstL~~FskirP~Llt~-----khv~tL~PYL~s~~~t~~~~~f 1096 (1692)
T KOG1020|consen 1022 VTHVLNLLTHCLVEKISEVESDDMNEEESEVRLLAYLSTLFVFSKIRPQLLTK-----KHVITLQPYLTSKASTIEEAQF 1096 (1692)
T ss_pred cchHHHHHHHHHHHHHHhhhhHhhhcccchhHHHHHHHHHHHHHhcCchhccH-----HHHHHhhhHHhccccchHHHHH
Confidence 88899999999999999997 5656666778999999999999999999997 69999999999986553
Q ss_pred --HHHHhhcceeeeccCCChhHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhhcCCC
Q 047845 1123 --VVAKFLESVIFIIDALPSSVIEELEQDLKHMIVRHSFLTVVHACIKCLCSVSKISGKGLSTVEHLILVFFKYLDSHNP 1200 (1801)
Q Consensus 1123 --~~~~il~~Vv~i~~~Lp~~fl~eLe~dL~~lI~k~~~~~vv~acv~CL~~l~~~~~~~~~~v~~~i~~~~~~L~~~~~ 1200 (1801)
+++.+|++|+|+++++|++|++.||++|+++|.|+|. .+|.+||+|||+|+++.+++++.+++|++.|++.|..++.
T Consensus 1097 l~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~-a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~ 1175 (1692)
T KOG1020|consen 1097 LYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGM-ATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKS 1175 (1692)
T ss_pred HHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHh
Confidence 3678999999999999999999999999999999985 7888899999999999999999999999999999876432
Q ss_pred ---C-----ChhhhhhHHHHHHHHHhhccccccccccCcc------chhhhHHHHHHHhhcCChHHHHHHHHHHHHHHhc
Q 047845 1201 ---D-----SKQVVGRSLFCLGLLIRYGSSLLTTSYEKNI------DIVSNLNLFKRYLRMEDFSVKVRSLQALGFVLIA 1266 (1801)
Q Consensus 1201 ---d-----~~~~l~R~L~~lGll~Ry~~~~~~~~~~k~~------~v~~~l~lf~~~~~~~d~~iR~~AL~aLG~lc~s 1266 (1801)
+ +.|+++|+||++|+|+|||+|......+++. -.++++.+|.+|....+.++|++||+|||++|++
T Consensus 1176 s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~ 1255 (1692)
T KOG1020|consen 1176 SNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQ 1255 (1692)
T ss_pred ccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 2 4789999999999999999998765555552 1234555555555557899999999999999999
Q ss_pred CcchhchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHHHHhhhcccccCCCCcccccccCCccc-cccccCCCcchHH
Q 047845 1267 RPEHMLEKDIGKILEATLADSS-HIRLKMQALQNLYEYLLDAENQMETDKGSGNEVEYTVEDGHSV-PVAAGAGDTNICG 1344 (1801)
Q Consensus 1267 ~P~l~~~~~v~~i~~~~l~~~~-~~~lK~~vL~nl~eFL~~eE~r~~~~~~~~~~~~~~~~~~k~~-~v~~g~~Dsgv~s 1344 (1801)
||+||+++++.++|+.+|++.+ +...|+++|+|+++||++||+++......|.+.+ +.+++++| +|.+|++++|+||
T Consensus 1256 hp~l~~~~~v~nly~~ila~~n~~~~~ki~~l~n~~~yL~eee~~l~~~~~~w~~~~-k~edlkem~~v~sg~~s~~~~~ 1334 (1692)
T KOG1020|consen 1256 HPSLFTSREVLNLYDEILADDNSDIKSKIQLLQNLELYLLEEEKKLRNKGKNWTKSN-KSEDLKEMLDVSSGMGSSDGVS 1334 (1692)
T ss_pred CchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhh-hHHHHHhhcccccccccccchH
Confidence 9999999999999999999875 4445999999999999999999977666443444 44444554 8999999999999
Q ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCccCCCcccceeeecccCcchhhHHHHHHHHHHHHhhChhhhhhh
Q 047845 1345 GIIQLYWDKILGRCLDANEEVRQTALKIVEVVLRQGLVHPITCVPYLIALETDPQEVNSKLAHHLLMNMNEKYPAFFESR 1424 (1801)
Q Consensus 1345 ~ivQrYL~~IL~~~ls~~~~vr~~Al~vl~~ilrQGLVhP~~cvPtLIALeTdp~~~Ir~~A~~lL~~L~eKyes~v~~~ 1424 (1801)
+|||+||++||++|++.+.++|++|+++|++||+||||||.+||||||||+|||.+++|++|+.+|++||+||+|||+++
T Consensus 1335 ~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QGLVhP~~cvPtLIAL~Tdp~~~~r~~Ad~LL~eid~kY~gfv~sk 1414 (1692)
T KOG1020|consen 1335 AIMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQGLVHPVHCVPTLIALETDPSQAIRHVADELLKEIDEKYEGFVFSK 1414 (1692)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccCCCccchhhhheeecCChHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCcccchhhhhhcccccCCCCCCCchHHhhhhhhhhHHhhccChhhHHHHHHHHHhcccCCC
Q 047845 1425 LGDGLQMSFVFIQSIGGGSSECRNQKFQSKAAGTMKGKSDGSSLTQARLGVSQIYKLIRGNRNSRNKFMSSIVRKFDNPS 1504 (1801)
Q Consensus 1425 ~~~GI~~Af~yq~~i~~~~~~~~~~~~qsk~~~~~~g~~~~~~~~~a~~~ls~LY~llr~~r~~R~kFL~sLlk~Fd~~~ 1504 (1801)
+++|++++|.||+.+.....+ -.+|++.....+.+ +.+++|+++|+||++|++|+.++++.||++
T Consensus 1415 ~~~G~~lsf~lq~~~~~~~~~------------~~~~fr~~d~ss~t--l~s~ly~~~r~nk~~rr~fl~si~~lfd~~- 1479 (1692)
T KOG1020|consen 1415 LSQGVQLSFKLQQHIDEKTYK------------PVRGFRLPDHSSST--LKSNLYKSIRGNKQIRRSFLQSILDLFDDP- 1479 (1692)
T ss_pred HHhhhHHHHHHHHHHHHHhhc------------ccccccCcccchhH--HHhccHHHHhhhHHHHHHHHHHHHHhccCC-
Confidence 999999999999998653321 12333322222333 579999999999999999999999999987
Q ss_pred CCCCCchhHHHHHHhhccCCCCCCchhHHHHHHhhHHHhcchhhHHHHHHHHHHHhhhhhhhcccccCCCcccccccccc
Q 047845 1505 CSDLVIPFLMYCTEVLALLPFSSPDEPLYLIYTINRVIQVRAGALEANMKAMSTHLLQRDAQKTTYENGMVDQESAEPVF 1584 (1801)
Q Consensus 1505 ~~~~~l~~l~FlaeNLA~fpY~t~dE~L~vI~~Id~iVS~~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1584 (1801)
+.+.+.|+.|||+|||+|||+++|||||+||+||++++..|++|+++||+.+.+- .+ +|+++
T Consensus 1480 -~ks~vs~~~yiadnLA~fPyvsqdEPLyl~~tID~~la~~g~~ll~~~K~~l~~~----------~e-------~D~~~ 1541 (1692)
T KOG1020|consen 1480 -NKSVVSFLLYIADNLANFPYVSQDEPLYLMHTIDLTLARLGEVLLDEFKELLHKD----------SE-------GDSDS 1541 (1692)
T ss_pred -CcchhhhHHHHHhhhccCCcccccchHHHHHHHHHHHHHhhHHHHHHHHHHhccc----------cc-------cCCCC
Confidence 3447999999999999999999999999999999999999999999999987220 11 14444
Q ss_pred cccccccccCCcCCCCCCCccccccccccCCCCCCCCCCCcccccCCCchhhhhhcccCCCCCCCCcchhHHHHHHHHHH
Q 047845 1585 NHMTSMDLNGTIKEEPAAQPIFYHMSSIDLNGTVQPEPNDQPLLHRMPPLEAKVHVMSSGEPRDIPKDDLQKVQVDCISA 1664 (1801)
Q Consensus 1585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~s 1664 (1801)
.+..+||.+ ..+.++|+ +-.++.++
T Consensus 1542 ~~~~~~d~~--------------------------------s~~~~~p~-----------------------~~~~~l~~ 1566 (1692)
T KOG1020|consen 1542 DDDNMMDIN--------------------------------SVMKCLPE-----------------------LIFLILSS 1566 (1692)
T ss_pred cccchhhhH--------------------------------HHhhhhhH-----------------------HHHHHHhc
Confidence 433333321 22333332 44566799
Q ss_pred HHHHHHHHHHHHHHHHhCCChhhhcccCCCCCCCCCCc--cccCCCCCCcchhhhhcC---------CcHHHHHHHHHHH
Q 047845 1665 TALQLLLKLKRYLKIVYGLNDARCQAYSPSEPQKPGEP--LTKQNIPFDISDTRVALP---------STYEDLMQKYQEF 1733 (1801)
Q Consensus 1665 ~~~~lLL~LK~hLk~~Yglsd~k~~~Yspse~~K~~e~--~~r~~~~f~~~~~~~~l~---------~~~~~~~~~y~~F 1733 (1801)
++|++|++||+|||.+||++|+|++.|+|+|..|+||+ .++....|.|..+...+. +-++.+..+|.+|
T Consensus 1567 q~~slll~lk~~lk~l~~~~dski~~y~pse~~klydka~~r~~~~~f~P~~~~d~~~~~~~~~~~~e~k~~l~~~y~~f 1646 (1692)
T KOG1020|consen 1567 QNLSLLLYLKDHLKDLYGFSDSKIHLYSPSEDLKLYDKAVTRKLKNDFKPKTTLDILKFSFAELILIEEKRSLGKQYTDF 1646 (1692)
T ss_pred cchhhHHHHHHHHHHHhccccccccccCCchhhhHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999995 455667899998877663 2367899999999
Q ss_pred HHHhhh---cccchhHHhhhcccCCCCCCCCCCCCccc
Q 047845 1734 KNALKE---DTVDYAVYTANIKRKRPAPRKGVRYGRII 1768 (1801)
Q Consensus 1734 k~lm~~---d~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 1768 (1801)
+++|.+ ++..+.+.+.++.++.+|.+..++++.++
T Consensus 1647 r~~~~~ld~~~~~e~s~~~t~~n~~~~s~~~~~s~~~~ 1684 (1692)
T KOG1020|consen 1647 RKLMLDLDEEEEGEVSASTTAANDAITSLLDGGSPSNN 1684 (1692)
T ss_pred HHHHHhcCCCCcCCcccchhhhhhhhhhcccCCCCccc
Confidence 999995 33345566679999999999988888655
|
|
| >PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus | Back alignment and domain information |
|---|
| >KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] | Back alignment and domain information |
|---|
| >PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion | Back alignment and domain information |
|---|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
| >KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
| >COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 77.6 bits (190), Expect = 3e-14
Identities = 92/698 (13%), Positives = 189/698 (27%), Gaps = 257/698 (36%)
Query: 959 VNDDESSIQDLVCKTFYEFWFEEPSGLQTQYFGDGSSVPLEVAKKTEQIVE--MSRGL-P 1015
D + + ++ K + + + + K E++V+ + L
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR-----LFWTLLSKQEEMVQKFVEEVLRI 89
Query: 1016 NHQLLVTVIKRNLALDFFPQSAKAAGINPMSLASVRRRC----ELMCKCLLERILQVEEM 1071
N++ L++ IK + + R R ++ K + R+ ++
Sbjct: 90 NYKFLMSPIK---------TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140
Query: 1072 NNEGMEMRTLPYVLVLH------------AFCVVDPTLCAP-----------VSDPSQFV 1108
+E+R V ++ C+ C + P +
Sbjct: 141 RQALLELRPAKNV-LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 1109 ITLQPYLKSQVDNRVVAKFLESVIFIIDALPSSVIEELEQDLKHMIVRHSFLTVVHACIK 1168
LQ L Q+D S + I ++ +L+ ++ +
Sbjct: 200 EMLQK-LLYQID-----PNWTSRSDHSSNIKLR-IHSIQAELRRLLKSKPY-------EN 245
Query: 1169 CLCSVSKISGKGLSTVEHLILVFFKYLDSHNPD--SKQVVGRSLFCLGLLIRYGSSLLTT 1226
CL L+L + + + + F L I LLTT
Sbjct: 246 CL----------------LVL------L----NVQNAKAW--NAFNLSCKI-----LLTT 272
Query: 1227 SYEKNIDIVSN--------------------LNLFKRYLRMEDFSVKVRSLQALGFVL-- 1264
+++ D +S +L +YL + L L
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 1265 --------IARPE---HMLEKDIGKILEATLADSSHIRLKMQALQNLYEYLLDAENQMET 1313
+A + H+ + I+E++L L+ + +++ L
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNV-----LEPAEYRKMFDRL--------- 378
Query: 1314 DKGSGNEVEYTVEDGHSV-PVAAGAGDTNICGGIIQLYWDKILGRCLDANEEVRQTALKI 1372
SV P +I ++ L W + ++ + +
Sbjct: 379 ----------------SVFPP-----SAHIPTILLSLIW----------FDVIKSDVMVV 407
Query: 1373 VEVVLRQGLV----HPITCVPYLIALETDPQEVNSK------------------------ 1404
V + + LV T I LE + N
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 1405 ---------LAHHLL-MNMNEKYPAFFESRLGDGLQMSFVFIQSIGGGSSECRNQKFQSK 1454
+ HHL + E+ F D F F++ QK +
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERM-TLFRMVFLD-----FRFLE-----------QKIRHD 510
Query: 1455 AAGTMKGKSDGSSLTQARLGVSQIYK-LIRGNRNSRNKFMSSIVRKFDNPSCSDLVIPFL 1513
+ S ++L Q + YK I N + +++I+ FL
Sbjct: 511 STAWNASGSILNTLQQLKF-----YKPYICDNDPKYERLVNAILD-------------FL 552
Query: 1514 MYCTEVLALLPFSS--------PDEPLYLIYTINRVIQ 1543
E L ++ DE ++ ++ +Q
Sbjct: 553 PKIEENLICSKYTDLLRIALMAEDEAIF--EEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Length = 88 | Back alignment and structure |
|---|
| >2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 92 | Back alignment and structure |
|---|
| >2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
| >1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Length = 66 | Back alignment and structure |
|---|
| >2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 | Back alignment and structure |
|---|
| >2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 | Back alignment and structure |
|---|
| >1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Length = 61 | Back alignment and structure |
|---|
| >2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 | Back alignment and structure |
|---|
| >2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Length = 71 | Back alignment and structure |
|---|
| >2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114 | Back alignment and structure |
|---|
| >1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 88 | Back alignment and structure |
|---|
| >2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Length = 61 | Back alignment and structure |
|---|
| >3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A Length = 129 | Back alignment and structure |
|---|
| >3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Length = 77 | Back alignment and structure |
|---|
| >3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Length = 70 | Back alignment and structure |
|---|
| >2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Length = 60 | Back alignment and structure |
|---|
| >1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 51 | Back alignment and structure |
|---|
| >1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Length = 79 | Back alignment and structure |
|---|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
| >3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112 | Back alignment and structure |
|---|
| >3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112 | Back alignment and structure |
|---|
| >2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 56 | Back alignment and structure |
|---|
| >3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Length = 184 | Back alignment and structure |
|---|
| >1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Length = 88 | Back alignment and structure |
|---|
| >2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Length = 66 | Back alignment and structure |
|---|
| >2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A Length = 142 | Back alignment and structure |
|---|
| >2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 77 | Back alignment and structure |
|---|
| >3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Length = 226 | Back alignment and structure |
|---|
| >3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A* Length = 159 | Back alignment and structure |
|---|
| >1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Length = 76 | Back alignment and structure |
|---|
| >3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} Length = 75 | Back alignment and structure |
|---|
| >3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Length = 68 | Back alignment and structure |
|---|
| >3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Length = 207 | Back alignment and structure |
|---|
| >3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Length = 52 | Back alignment and structure |
|---|
| >2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* Length = 65 | Back alignment and structure |
|---|
| >1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 64 | Back alignment and structure |
|---|
| >2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B* Length = 386 | Back alignment and structure |
|---|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
| >2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Length = 105 | Back alignment and structure |
|---|
| >3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Length = 488 | Back alignment and structure |
|---|
| >1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1 Length = 134 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1801 | |||
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 98.75 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 98.73 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 98.71 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 98.53 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 98.5 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 98.48 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 98.47 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 98.46 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 98.45 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 98.44 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 98.34 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 98.28 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 98.28 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 98.23 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 97.84 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 97.73 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 97.7 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 97.65 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 97.61 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 97.55 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 97.54 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 97.52 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 97.41 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 97.35 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 97.29 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 97.25 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 97.22 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 97.1 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 97.03 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 97.01 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 96.96 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 96.84 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 96.71 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 96.63 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 96.57 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 96.54 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 96.51 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 96.26 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 96.21 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 96.19 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 96.18 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 96.11 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 95.91 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 95.79 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 95.56 | |
| 3gs3_A | 257 | Symplekin, LD45768P; helix-turn-helix heat repeat | 95.47 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 95.45 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 95.45 | |
| 3o2t_A | 386 | Symplekin; heat repeat, scaffold, protein binding; | 95.16 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 94.96 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 94.91 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 94.38 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 94.33 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 94.33 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 94.31 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 92.51 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 92.43 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 92.26 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 91.69 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 90.88 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 90.15 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 89.73 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 89.53 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 87.45 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 86.34 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 85.25 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 85.04 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 82.79 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 82.08 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 81.61 |
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=98.75 E-value=5.2e-06 Score=105.12 Aligned_cols=489 Identities=14% Similarity=0.070 Sum_probs=260.2
Q ss_pred HHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH----HHHHH
Q 047845 837 DKILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGILLH----ILMLY 912 (1801)
Q Consensus 837 d~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~----L~~~y 912 (1801)
..++..|...+.++.+.+|.+|+.+|..+.+.-|.--..+.+...+.....++++.+|.+|..++|.+..+ .....
T Consensus 86 ~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l 165 (588)
T 1b3u_A 86 HCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAEL 165 (588)
T ss_dssp GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHH
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 34555666666788899999999999999987653211223445555555688899999999999985433 44667
Q ss_pred HHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHHHHHHhhccCCCCCCcccccCC
Q 047845 913 FVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVCKTFYEFWFEEPSGLQTQYFGD 992 (1801)
Q Consensus 913 y~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~elWF~p~~~~~~~~~~d 992 (1801)
.+.+...+.|+...||+.+++.+..++...+.-.....+.-.++.-.+|+++.||..|.+++..+.-.-..
T Consensus 166 ~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--------- 236 (588)
T 1b3u_A 166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ--------- 236 (588)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH---------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH---------
Confidence 78888888999999999999999999876553111123334455556899999999999998876532100
Q ss_pred CCCchHHHHHHHHHHHHHHhcC-CChhhHHHHHHHhhhcccCcchhhhhCCCcchhhHHHHHHHHHHHHHHHHHHhhccc
Q 047845 993 GSSVPLEVAKKTEQIVEMSRGL-PNHQLLVTVIKRNLALDFFPQSAKAAGINPMSLASVRRRCELMCKCLLERILQVEEM 1071 (1801)
Q Consensus 993 ~ss~~~~~~~k~~~iv~vl~~~-~~~~~lv~~~k~~l~~d~l~~~~k~~~~~~~~~~~v~~~c~~ivd~LVe~ll~lee~ 1071 (1801)
. .....++..+... .+..|-+ +.... ..+.......+. ..+.+.++..++.+=.
T Consensus 237 -----~---~~~~~~~~~l~~~~~d~~~~v---R~~a~-~~l~~l~~~~~~------------~~~~~~l~~~l~~~l~- 291 (588)
T 1b3u_A 237 -----E---DLEALVMPTLRQAAEDKSWRV---RYMVA-DKFTELQKAVGP------------EITKTDLVPAFQNLMK- 291 (588)
T ss_dssp -----H---HHHHHTHHHHHHHHTCSSHHH---HHHHH-HTHHHHHHHHCH------------HHHHHTHHHHHHHHHT-
T ss_pred -----H---HHHHHHHHHHHHHccCCCHHH---HHHHH-HHHHHHHHHhCc------------ccchhHHHHHHHHHhC-
Confidence 0 0111122211110 0111100 00000 000000000000 0011223333333211
Q ss_pred ccccccccchhHHHHHHhhhccccCccCCCCCccchhhhhccccccccCh--HHH-HHhhcceeeeccCCChh-HHHHHH
Q 047845 1072 NNEGMEMRTLPYVLVLHAFCVVDPTLCAPVSDPSQFVITLQPYLKSQVDN--RVV-AKFLESVIFIIDALPSS-VIEELE 1147 (1801)
Q Consensus 1072 ~~~~~~~~~~~~l~~L~~Fak~~P~L~~~~~~~~~~i~~L~PYL~~~~~~--~~~-~~il~~Vv~i~~~Lp~~-fl~eLe 1147 (1801)
+++.+++. .+..+|..|+..-+.-.. ...+...+.|++....++ ..+ ......+-.+...+++. +...+.
T Consensus 292 -d~~~~vr~-~a~~~l~~~~~~~~~~~~----~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~ 365 (588)
T 1b3u_A 292 -DCEAEVRA-AASHKVKEFCENLSADCR----ENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 365 (588)
T ss_dssp -CSSHHHHH-HHHHHHHHHHHTSCTTTH----HHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTH
T ss_pred -CCcHHHHH-HHHHHHHHHHHHhChhhh----hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 11222222 244566666654321100 002455666776542111 111 11111111112222222 223333
Q ss_pred HHHHHHHhccChHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHhhcccccccc
Q 047845 1148 QDLKHMIVRHSFLTVVHACIKCLCSVSKISGKGLSTVEHLILVFFKYLDSHNPDSKQVVGRSLFCLGLLIRYGSSLLTTS 1227 (1801)
Q Consensus 1148 ~dL~~lI~k~~~~~vv~acv~CL~~l~~~~~~~~~~v~~~i~~~~~~L~~~~~d~~~~l~R~L~~lGll~Ry~~~~~~~~ 1227 (1801)
..|..++. .....|-.+++.+|..+....+.. .....++..+...+.. .+......++.++|.+++.+..
T Consensus 366 p~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~~~~-~~~~~~lp~l~~~~~d---~~~~vr~~~~~~l~~l~~~~~~----- 435 (588)
T 1b3u_A 366 PLFLAQLK-DECPEVRLNIISNLDCVNEVIGIR-QLSQSLLPAIVELAED---AKWRVRLAIIEYMPLLAGQLGV----- 435 (588)
T ss_dssp HHHHHHHT-CSCHHHHHHHHTTCHHHHHHSCHH-HHHHHHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHHCG-----
T ss_pred HHHHHHhC-CCchHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHHHHHcCH-----
Confidence 33334443 233456677788888887665432 1223333333333321 2222222334456655543211
Q ss_pred ccCccchhhhHHHHHHHhhcCChHHHHHHHHHHHHHHhcCcchhchhhHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Q 047845 1228 YEKNIDIVSNLNLFKRYLRMEDFSVKVRSLQALGFVLIARPEHMLEKDIGKILEATLADSSHIRLKMQALQNLYEYLLDA 1307 (1801)
Q Consensus 1228 ~~k~~~v~~~l~lf~~~~~~~d~~iR~~AL~aLG~lc~s~P~l~~~~~v~~i~~~~l~~~~~~~lK~~vL~nl~eFL~~e 1307 (1801)
.......++.+...+...+..||..|+.+||.++...+.-+..+.+.+.+...+.+ .+..++..++..+-.+...-
T Consensus 436 ---~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~-~~~~~R~~a~~~l~~l~~~~ 511 (588)
T 1b3u_A 436 ---EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGD-PNYLHRMTTLFCINVLSEVC 511 (588)
T ss_dssp ---GGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTC-SCHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHhc
Confidence 01113455666666666778899999999999997765433233344444443332 23344444443333321100
Q ss_pred hhhcccccCCCCcccccccCCccccccccCCCcchHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCccC--CC
Q 047845 1308 ENQMETDKGSGNEVEYTVEDGHSVPVAAGAGDTNICGGIIQLYWDKILGRCLDANEEVRQTALKIVEVVLRQGLVH--PI 1385 (1801)
Q Consensus 1308 E~r~~~~~~~~~~~~~~~~~~k~~~v~~g~~Dsgv~s~ivQrYL~~IL~~~ls~~~~vr~~Al~vl~~ilrQGLVh--P~ 1385 (1801)
|. .......++.++...-++++.||..|+..+..+.+.-=.+ +.
T Consensus 512 ----------------------------~~------~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~ 557 (588)
T 1b3u_A 512 ----------------------------GQ------DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQS 557 (588)
T ss_dssp ----------------------------HH------HHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHH
T ss_pred ----------------------------CH------HHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhHH
Confidence 00 1145567777778778889999999999999997631011 12
Q ss_pred cccceeeecccCcchhhHHHHHHHHHHH
Q 047845 1386 TCVPYLIALETDPQEVNSKLAHHLLMNM 1413 (1801)
Q Consensus 1386 ~cvPtLIALeTdp~~~Ir~~A~~lL~~L 1413 (1801)
..+|.|..|.+|+++.+|..|...+..+
T Consensus 558 ~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 558 EVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 5678888899999999999999887655
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
| >3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* | Back alignment and structure |
|---|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1801 | ||||
| d1mm2a_ | 61 | g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens | 9e-09 | |
| d1f62a_ | 51 | g.50.1.2 (A:) Williams-Beuren syndrome transcripti | 1e-08 | |
| d1we9a_ | 64 | g.50.1.2 (A:) PHD finger protein At5g26210 {Thale | 5e-07 | |
| d1fp0a1 | 70 | g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF- | 5e-07 | |
| d1wema_ | 76 | g.50.1.2 (A:) Death associated transcription facto | 5e-07 | |
| d1weea_ | 72 | g.50.1.2 (A:) PHD finger protein At1g33420 {Thale | 7e-07 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 8e-07 | |
| d1weva_ | 88 | g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu | 8e-06 | |
| d1wepa_ | 79 | g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus | 1e-05 | |
| d1zbdb_ | 124 | g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat | 0.002 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 0.002 |
| >d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61 | Back information, alignment and structure |
|---|
class: Small proteins fold: FYVE/PHD zinc finger superfamily: FYVE/PHD zinc finger family: PHD domain domain: Mi2-beta (CHD4) species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.1 bits (122), Expect = 9e-09
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 661 DLCCVCLDGRVEKRVFMCQGCQRLFHADCLGVREHEVPNRGWNCQLCLCRNQ 712
+ C VC DG + C C +H CL E+PN W C C C
Sbjct: 10 EFCRVCKDGG---ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58
|
| >d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 | Back information, alignment and structure |
|---|
| >d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70 | Back information, alignment and structure |
|---|
| >d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 | Back information, alignment and structure |
|---|
| >d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 | Back information, alignment and structure |
|---|
| >d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 | Back information, alignment and structure |
|---|
| >d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 | Back information, alignment and structure |
|---|
| >d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1801 | |||
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 98.98 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.79 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.59 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 98.47 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 98.3 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 98.05 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 98.02 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 97.85 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 97.64 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 97.49 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 97.43 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.27 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 96.85 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 96.41 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 96.35 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 96.08 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 95.86 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 95.64 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 95.28 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 94.84 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 94.4 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 91.67 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 89.38 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 89.05 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 86.66 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 83.0 |
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=3.6e-08 Score=122.24 Aligned_cols=482 Identities=14% Similarity=0.077 Sum_probs=258.3
Q ss_pred HHHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcC-ccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH----HHH
Q 047845 836 FDKILHLLLVSLRENSPIIRAKALRAVSIIVEVD-PEVLCDKRVQLAVEGRFCDSAISVREAALELLAGILLH----ILM 910 (1801)
Q Consensus 836 Fd~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~D-PsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~----L~~ 910 (1801)
...++..+...+..+.+.||..|+++|..|...- |.-+ ...+...|.+-..+....+|.+|..|++.+..+ ...
T Consensus 85 ~~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~~-~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~~~ 163 (588)
T d1b3ua_ 85 VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDL-EAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKA 163 (588)
T ss_dssp GGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHH-HHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHH
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3455666667778888999999999999998753 3222 222344555455667788999999999995433 556
Q ss_pred HHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHHHHHHhhcc-CCCCCCcccc
Q 047845 911 LYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVCKTFYEFWF-EEPSGLQTQY 989 (1801)
Q Consensus 911 ~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~elWF-~p~~~~~~~~ 989 (1801)
++.+.+..-+.|....|||.+.+.+.+++...+.......+...+...++|+++.||..|.+++.++=- .+.
T Consensus 164 ~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~------- 236 (588)
T d1b3ua_ 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ------- 236 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH-------
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCH-------
Confidence 678888888999999999999999999987665422233444555666799999999999999887621 110
Q ss_pred cCCCCCchHHHHHHHHHHHHHHhcC-CChhh-HHHHHHHhhhcccCcchhhhhCCCcchhhHHHHHHHHHHHHHHHHHHh
Q 047845 990 FGDGSSVPLEVAKKTEQIVEMSRGL-PNHQL-LVTVIKRNLALDFFPQSAKAAGINPMSLASVRRRCELMCKCLLERILQ 1067 (1801)
Q Consensus 990 ~~d~ss~~~~~~~k~~~iv~vl~~~-~~~~~-lv~~~k~~l~~d~l~~~~k~~~~~~~~~~~v~~~c~~ivd~LVe~ll~ 1067 (1801)
. .....++..+... .+..+ +....-+.++ +..+..+.+ .....++..+..
T Consensus 237 --------~---~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~-----~l~~~~~~~------------~~~~~l~~~l~~ 288 (588)
T d1b3ua_ 237 --------E---DLEALVMPTLRQAAEDKSWRVRYMVADKFT-----ELQKAVGPE------------ITKTDLVPAFQN 288 (588)
T ss_dssp --------H---HHHHHTHHHHHHHHTCSSHHHHHHHHHTHH-----HHHHHHCHH------------HHHHTHHHHHHH
T ss_pred --------H---HHHHHHHHHHHHhcccccHHHHHHHHHhHH-----HHHHHhhhh------------hhhhhhhHHHHH
Confidence 0 0111122222111 01111 0000000000 000000000 001122333222
Q ss_pred hcccccccccccchhHHHHHHhhhccccCccCCCCCccchhhhhccccccccCh--HH----HHHhhcceeeeccCCC-h
Q 047845 1068 VEEMNNEGMEMRTLPYVLVLHAFCVVDPTLCAPVSDPSQFVITLQPYLKSQVDN--RV----VAKFLESVIFIIDALP-S 1140 (1801)
Q Consensus 1068 lee~~~~~~~~~~~~~l~~L~~Fak~~P~L~~~~~~~~~~i~~L~PYL~~~~~~--~~----~~~il~~Vv~i~~~Lp-~ 1140 (1801)
+-. +.+.+++.. .+..|..+++.-+.-.. +..+...+.|.+....++ .. .+..+..+. ..+. +
T Consensus 289 ll~--d~~~~vr~~-a~~~l~~~~~~l~~~~~----~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~---~~~~~~ 358 (588)
T d1b3ua_ 289 LMK--DCEAEVRAA-ASHKVKEFCENLSADCR----ENVIMSQILPCIKELVSDANQHVKSALASVIMGLS---PILGKD 358 (588)
T ss_dssp HHT--CSSHHHHHH-HHHHHHHHHHTSCTTTH----HHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGH---HHHCHH
T ss_pred HHh--ccchHHHHH-HHHHHHHHHHHHhhhhh----hhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhh---hccchh
Confidence 211 112222222 23345555543221111 112334555665543211 11 121121111 1122 2
Q ss_pred hHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHhhc
Q 047845 1141 SVIEELEQDLKHMIVRHSFLTVVHACIKCLCSVSKISGKGLSTVEHLILVFFKYLDSHNPDSKQVVGRSLFCLGLLIRYG 1220 (1801)
Q Consensus 1141 ~fl~eLe~dL~~lI~k~~~~~vv~acv~CL~~l~~~~~~~~~~v~~~i~~~~~~L~~~~~d~~~~l~R~L~~lGll~Ry~ 1220 (1801)
.+...+...+...+.- ....+...++.|+..+....+.. .....++..+...++. .+.....-.+-+++.++..+
T Consensus 359 ~~~~~l~p~l~~~l~d-~~~~v~~~~~~~l~~~~~~~~~~-~~~~~ll~~l~~~~~d---~~~~~r~~~~~~l~~l~~~~ 433 (588)
T d1b3ua_ 359 NTIEHLLPLFLAQLKD-ECPEVRLNIISNLDCVNEVIGIR-QLSQSLLPAIVELAED---AKWRVRLAIIEYMPLLAGQL 433 (588)
T ss_dssp HHHHHTHHHHHHHHTC-SCHHHHHHHHTTCHHHHHHSCHH-HHHHHHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-hhhhhhhHHHHHHHHHHhhcchh-hhhhHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHc
Confidence 2334443334344432 23456677778877776655421 2223344444333322 12111122333455554432
Q ss_pred cccccccccCccchhhhHHHHHHHhhcCChHHHHHHHHHHHHHHhcCcchhchhhHHHHHHHHhcCCchhHHHHHHHHHH
Q 047845 1221 SSLLTTSYEKNIDIVSNLNLFKRYLRMEDFSVKVRSLQALGFVLIARPEHMLEKDIGKILEATLADSSHIRLKMQALQNL 1300 (1801)
Q Consensus 1221 ~~~~~~~~~k~~~v~~~l~lf~~~~~~~d~~iR~~AL~aLG~lc~s~P~l~~~~~v~~i~~~~l~~~~~~~lK~~vL~nl 1300 (1801)
.. .........++...+......||..|+++||.++.....-...+.+...+...+.+. +...+..++..+
T Consensus 434 ~~--------~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~~~~~~i~~~l~~~~~~~-~~~~R~~~~~~l 504 (588)
T d1b3ua_ 434 GV--------EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDP-NYLHRMTTLFCI 504 (588)
T ss_dssp CG--------GGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCS-CHHHHHHHHHHH
T ss_pred Ch--------HhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 11 111233445555555667789999999999999876543222333455555555443 233343344333
Q ss_pred HHHHHHHhhhcccccCCCCcccccccCCccccccccCCCcchHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcC
Q 047845 1301 YEYLLDAENQMETDKGSGNEVEYTVEDGHSVPVAAGAGDTNICGGIIQLYWDKILGRCLDANEEVRQTALKIVEVVLRQG 1380 (1801)
Q Consensus 1301 ~eFL~~eE~r~~~~~~~~~~~~~~~~~~k~~~v~~g~~Dsgv~s~ivQrYL~~IL~~~ls~~~~vr~~Al~vl~~ilrQG 1380 (1801)
..+... .+ .....+.+++.+++.+-++.+.||..|+..+..+...
T Consensus 505 ~~l~~~------------------------------~~----~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~- 549 (588)
T d1b3ua_ 505 NVLSEV------------------------------CG----QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPI- 549 (588)
T ss_dssp HHHHHH------------------------------HH----HHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGG-
T ss_pred HHHHHH------------------------------cC----hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH-
Confidence 222100 00 0125577899999999999999999999999988432
Q ss_pred ccCC----CcccceeeecccCcchhhHHHHHHHHHHH
Q 047845 1381 LVHP----ITCVPYLIALETDPQEVNSKLAHHLLMNM 1413 (1801)
Q Consensus 1381 LVhP----~~cvPtLIALeTdp~~~Ir~~A~~lL~~L 1413 (1801)
..+ ....|.|..|..|+++.+|..|...+..|
T Consensus 550 -~~~~~~~~~i~~~l~~L~~D~d~dVr~~A~~al~~l 585 (588)
T d1b3ua_ 550 -LDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp -SCHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred -cCcHhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 122 23578999999999999999999887654
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
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| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
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| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|