Citrus Sinensis ID: 047854

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MGWGATTEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEKSSQKQEKRKALLLKQKQQQQKQQQQHEDNMNRVSSNDEKTMSTAEHEKQMAFMQPAMAMENQSWPTMYQDIASWPSDHHQPAVIDELGLWGGLWTFDDTNGRVDASTNCNKMAAAVQQNQAATFALGGDSSNFCNGGYIFQEGF
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHccccHHHHcccccccccccccccHHHHHHHHHHHHHHccHHHHHHccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHcccccccccHHHHHHHHHHHHHcccccHHHHHHHccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHccccHHHHcccccccccccccHcccccccccccccccccccccHccHHHHHHHHHHcccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mgwgatteqgwrkgpwtpeeDKLLTEHVNLLGegrwssvarsaglnrsgkscRLRWVNylrpglkrgqltpqeeGIIIELHALWGNKWSTIArylpgrtdneIKNYWRTHFKKEKSSQKQEKRKALLLKQKQQQQKQQQQHEdnmnrvssndektmSTAEHEKQMAfmqpamamenqswptmyqdiaswpsdhhqpavidelglwgglwtfddtngrvdasTNCNKMAAAVQQNQAATFalggdssnfcnggyifqegf
Flexible Loop (DISEMBL)
mgwgatteqgwrkgpwtpeEDKLLTEHVNLLgegrwssvarsaglnrsgkscrlrWVNYLrpglkrgqltpqEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEKSSQKQEKRKALLLKQKQQQQKqqqqhednmnrvssNDEKTMSTAEHEKQMAFMQPAMAMENQSWPTMYQDIASWPSDHHQPAVIDELGLWGGLWTFDDTNGRVDASTNCNKMAAAVQQNQAATFALGGDSSNFCNGGYIFQEGF
Low Complexity Region (SEG)
MGWGATTEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFkkekssqkqekrkalllkqkqqqqkqqqqHEDNMNRVSSNDEKTMSTAEHEKQMAFMQPAMAMENQSWPTMYQDIASWPSDHHQPAVIDELGLWGGLWTFDDTNGRVDASTNCNKMAAAVQQNQAATFALGGDSSNFCNGGYIFQEGF
Disordered region (IsUnstruct)
*********************KLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHF*******************************************************************WPTMYQDIASWPSDHHQPAVIDELGLWGGLWTFDDTNGRVDASTNCNKMAAAVQQNQAATFALGGDSSNFCNGGYIF****
Disordered Region (DISOPRED)
***GATTEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHF***************************************************************************************IDELGLWGGLWTFDDTNGRV****************QAATFALGGDSSNFCNGGYIFQEGF
Disordered Region (DISEMBL)
************KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHF***********************************************AEHEKQMAFMQPAMAMENQSWPTMYQDIASWPSDHHQPAVIDELGLWGGLWTFDDTNGRVDASTNCNKMAAAVQQNQAATFALGGDSSNFCNGGYIFQEGF
Disordered Region (DISPRO)
***GATTEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEKSSQKQEKRKALL*******************************************AMAMENQS******************AVIDELGLWGGLWTFDDTNGRVDASTNC*KMA*******************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGWGATTEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEKSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDEKTMSTAEHEKQMAFMQPAMAMENQSWPTMYQDIASWPSDHHQPAVIDELGLWGGLWTFDDTNGRVDASTNCNKMAAAVQQNQAATFALGGDSSNFCNGGYIFQEGF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	259	2.2.26 [Sep-21-2011]
Q9LX82	256	Transcription factor MYB4	no	no	0.444	0.449	0.647	2e-41
Q4JL84	235	Transcription factor MYB5	no	no	0.447	0.493	0.633	5e-41
Q4JL76	242	Myb-related protein MYBAS	no	no	0.444	0.475	0.634	1e-38
Q53NK6	237	Myb-related protein MYBAS	no	no	0.444	0.485	0.630	2e-38
P81391	205	Myb-related protein 305 O	N/A	no	0.393	0.497	0.666	4e-37
Q9LK95	226	Transcription factor MYB2	no	no	0.393	0.451	0.647	8e-37
P81396	198	Myb-related protein 340 O	N/A	no	0.393	0.515	0.650	1e-35
Q8GWP0	360	Transcription factor MYB3	no	no	0.413	0.297	0.616	2e-35
Q7XBH4	257	Myb-related protein Myb4	no	no	0.463	0.466	0.570	3e-35
Q38850	249	Transcription repressor M	no	no	0.505	0.526	0.482	3e-34

>sp|Q9LX82|MYB48_ARATH Transcription factor MYB48 OS=Arabidopsis thaliana GN=MYB48 PE=2 SV=1

 Score =  169 bits (428), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 77/119 (64%), Positives = 96/119 (80%), Gaps = 4/119 (3%)

Query: 8   EQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRG 67
           E+G RKGPWT +ED LL   V+L G+ RW  +A+ +GLNR+GKSCRLRWVNYL PGLKRG
Sbjct: 4   EEGNRKGPWTEQEDILLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRG 63

Query: 68  QLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEKSSQKQEKRKAL 126
           ++TPQEE +++ELHA WGN+WS IAR LPGRTDNEIKNYWRTH +K    + QEK++ +
Sbjct: 64  KMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRK----KAQEKKRPV 118

Transcription factor.
Arabidopsis thaliana (taxid: 3702)

>sp|Q4JL84|MYB59_ARATH Transcription factor MYB59 OS=Arabidopsis thaliana GN=MYB59 PE=2 SV=2

 Score =  167 bits (424), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 76/120 (63%), Positives = 96/120 (80%), Gaps = 4/120 (3%)

Query: 7   TEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKR 66
            ++ +RKGPWT +ED LL   V+L G+ RW  VA+ +GLNR+GKSCRLRWVNYL PGLKR
Sbjct: 4   VQEEYRKGPWTEQEDILLVNFVHLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPGLKR 63

Query: 67  GQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEKSSQKQEKRKAL 126
           G++TPQEE +++ELHA WGN+WS IAR LPGRTDNEIKNYWRTH +K    + QEK++ +
Sbjct: 64  GKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRK----KAQEKKRPM 119

Transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q4JL76|MYBA2_ORYSJ Myb-related protein MYBAS2 OS=Oryza sativa subsp. japonica GN=MYBAS2 PE=2 SV=1

 Score =  159 bits (403), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 73/115 (63%), Positives = 88/115 (76%)

Query: 5   ATTEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGL 64
            T  +  RKGPWT +ED  L   V L GE RW  +A+ +GLNR+GKSCRLRWVNYL PGL
Sbjct: 2   VTVREEIRKGPWTEQEDLQLVCTVRLFGERRWDFIAKVSGLNRTGKSCRLRWVNYLHPGL 61

Query: 65  KRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEKSSQK 119
           KRG+++P EE +I+ELHA WGN+WS IAR LPGRTDNEIKNYWRTH +K+   +K
Sbjct: 62  KRGRMSPHEERLILELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKKAQERK 116

Transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q53NK6|MYBA1_ORYSJ Myb-related protein MYBAS1 OS=Oryza sativa subsp. japonica GN=MYBAS1 PE=2 SV=1

 Score =  159 bits (403), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 75/119 (63%), Positives = 90/119 (75%), Gaps = 4/119 (3%)

Query: 5   ATTEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGL 64
            T  +  RKGPWT +ED  L   V L G+ RW  VA+ +GLNR+GKSCRLRWVNYL PGL
Sbjct: 2   VTVREEMRKGPWTEQEDLQLVCTVRLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPGL 61

Query: 65  KRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEKSSQKQEKR 123
           K G+++P+EE +IIELHA WGN+WS IAR LPGRTDNEIKNYWRTH +K    + QE+R
Sbjct: 62  KHGRMSPKEEHLIIELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRK----KAQERR 116

Transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P81391|MYB05_ANTMA Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1

 Score =  155 bits (391), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 68/102 (66%), Positives = 85/102 (83%)

Query: 12  RKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTP 71
           RKGPWT EED +L  ++   GEG W+S+ARSAGL R+GKSCRLRW+NYLRP ++RG +TP
Sbjct: 14  RKGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITP 73

Query: 72  QEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKK 113
           +E+ +I+ELHA WGN+WS IA+ LPGRTDNEIKNYWRT  +K
Sbjct: 74  EEQLLIMELHAKWGNRWSKIAKTLPGRTDNEIKNYWRTRIQK 115

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|Q9LK95|MYB21_ARATH Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=1

 Score =  154 bits (388), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 66/102 (64%), Positives = 86/102 (84%)

Query: 12  RKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTP 71
           RKGPWT EED +L  ++   G+G W+S+A+SAGL R+GKSCRLRW+NYLRP ++RG +TP
Sbjct: 21  RKGPWTMEEDLILINYIANHGDGVWNSLAKSAGLKRTGKSCRLRWLNYLRPDVRRGNITP 80

Query: 72  QEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKK 113
           +E+ II+ELHA WGN+WS IA++LPGRTDNEIKN+WRT  +K
Sbjct: 81  EEQLIIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQK 122

Transcription factor involved in photomorphogenesis in the light. May act downstream of the light receptor network and directly affects transcription of light-induced genes. In darkness, its probable degradation prevent the activation of light-induced genes. Required to activate expression of PAL.

Arabidopsis thaliana (taxid: 3702)

>sp|P81396|MYB40_ANTMA Myb-related protein 340 OS=Antirrhinum majus GN=MYB340 PE=2 SV=1

 Score =  149 bits (377), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 67/103 (65%), Positives = 86/103 (83%), Gaps = 1/103 (0%)

Query: 12  RKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTP 71
           RKGPWT EED +L   ++  GEG W+++ARSAGL R+GKSCRLRW+NYLRP ++RG +TP
Sbjct: 14  RKGPWTMEEDLILINFISNHGEGVWNTIARSAGLKRTGKSCRLRWLNYLRPDVRRGNITP 73

Query: 72  QEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYW-RTHFKK 113
           +E+ +I+ELHA WGN+WS IA++LPGRTDNEIKNYW RT  +K
Sbjct: 74  EEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWNRTRIQK 116

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|Q8GWP0|MYB39_ARATH Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1

 Score =  149 bits (376), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 66/107 (61%), Positives = 82/107 (76%)

Query: 8   EQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRG 67
           ++G +KGPW PEED  LT ++N  G G W S+ + AGLNR GKSCRLRW+NYLRP ++RG
Sbjct: 10  DKGVKKGPWLPEEDDKLTAYINENGYGNWRSLPKLAGLNRCGKSCRLRWMNYLRPDIRRG 69

Query: 68  QLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKE 114
           + +  EE  I+ LHAL GNKWS IA +LPGRTDNEIKNYW TH +K+
Sbjct: 70  KFSDGEESTIVRLHALLGNKWSKIAGHLPGRTDNEIKNYWNTHMRKK 116

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XBH4|MYB4_ORYSJ Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2

 Score =  149 bits (375), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 69/121 (57%), Positives = 82/121 (67%), Gaps = 1/121 (0%)

Query: 1   MGWGATTEQ-GWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNY 59
           MG     E+ G +KGPWTPEEDK+L  H+   G G W ++ + AGL R GKSCRLRW+NY
Sbjct: 1   MGRAPCCEKMGLKKGPWTPEEDKVLVAHIQRHGHGNWRALPKQAGLLRCGKSCRLRWINY 60

Query: 60  LRPGLKRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEKSSQK 119
           LRP +KRG  + +EE  II LH L GN+WS IA  LPGRTDNEIKN W TH KK   +  
Sbjct: 61  LRPDIKRGNFSKEEEDTIIHLHELLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLDAPA 120

Query: 120 Q 120
           Q
Sbjct: 121 Q 121

Putative transcription factor which is may be involved in cold stress response.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38850|MYB5_ARATH Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1

 Score =  145 bits (366), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 69/143 (48%), Positives = 92/143 (64%), Gaps = 12/143 (8%)

Query: 5   ATTEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGL 64
             T+ G ++GPWT EED++L   +   GEGRW S+ + AGL R GKSCRLRW+NYLRP +
Sbjct: 17  CCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSV 76

Query: 65  KRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEKSSQKQEKRK 124
           KRG +T  EE +I+ LH L GN+WS IA  +PGRTDNEIKNYW TH +K+          
Sbjct: 77  KRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKK---------- 126

Query: 125 ALLLKQKQQQQKQQQQHEDNMNR 147
             LL+Q    Q  +    +N+++
Sbjct: 127 --LLRQGIDPQTHKPLDANNIHK 147

Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
224077756	212	predicted protein [Populus trichocarpa]	0.772	0.943	0.695	8e-65
224077728	210	predicted protein [Populus trichocarpa]	0.772	0.952	0.679	3e-63
225451813	247	PREDICTED: myb-related protein 305 [Viti	0.841	0.882	0.535	7e-62
15230123	276	myb proto-oncogene protein [Arabidopsis	0.926	0.869	0.513	5e-60
297815292	271	MYB121 [Arabidopsis lyrata subsp. lyrata	0.891	0.852	0.528	1e-59
224120660	218	predicted protein [Populus trichocarpa]	0.795	0.944	0.621	2e-59
89953428	196	Fgenesh protein 125 [Beta vulgaris]	0.532	0.704	0.784	1e-56
147765957	316	hypothetical protein VITISV_006722 [Viti	0.687	0.563	0.641	2e-56
356567132	255	PREDICTED: transcription factor MYB59-li	0.876	0.890	0.528	8e-55
359806134	275	uncharacterized protein LOC100785540 [Gl	0.891	0.84	0.511	6e-53

>gi|224077756|ref|XP_002305395.1| predicted protein [Populus trichocarpa] gi|222848359|gb|EEE85906.1| predicted protein [Populus trichocarpa]

 Score =  253 bits (645), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 146/210 (69%), Positives = 162/210 (77%), Gaps = 10/210 (4%)

Query: 5   ATTEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGL 64
              EQGWRKGPWTPEEDKLL+E+V+L GEGRWSSV+R +GLNRSGKSCRLRWVNYLRPGL
Sbjct: 8   GIAEQGWRKGPWTPEEDKLLSEYVSLNGEGRWSSVSRCSGLNRSGKSCRLRWVNYLRPGL 67

Query: 65  KRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHF-KKEKSSQKQEKR 123
           KRGQ+TPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHF KK+KSSQKQEKR
Sbjct: 68  KRGQITPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKKDKSSQKQEKR 127

Query: 124 KALLLKQKQQQQKQQQQHEDNMNRVSSNDEKTMSTAEHEKQMAFMQPAMAMENQSWPTMY 183
            AL+LKQ+ QQQ+QQQ     M  V++ D   M  A+   +M FM     +E+Q  P M 
Sbjct: 128 NALILKQEVQQQQQQQLEAGEMKMVNTIDHVKMHEAQ---EMYFMY--HNLEDQCSPVMT 182

Query: 184 QDIASWPSDHHQPAVIDELGLWGGLWTFDD 213
           QD ASW        V D  GLWGGLW  DD
Sbjct: 183 QDAASWAD----FVVEDYYGLWGGLWNLDD 208

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077728|ref|XP_002305382.1| predicted protein [Populus trichocarpa] gi|222848346|gb|EEE85893.1| predicted protein [Populus trichocarpa]

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 144/212 (67%), Positives = 162/212 (76%), Gaps = 12/212 (5%)

Query: 5   ATTEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGL 64
              EQGWRKGPWTPEEDKLL+E+V+  GEGRWSSV+R +GLNRSGKSCRLRWVNYLRPGL
Sbjct: 4   GIAEQGWRKGPWTPEEDKLLSEYVSSNGEGRWSSVSRCSGLNRSGKSCRLRWVNYLRPGL 63

Query: 65  KRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHF-KKEKSSQKQEKR 123
           KRGQ+TPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHF KK+KSSQKQEKR
Sbjct: 64  KRGQITPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKKDKSSQKQEKR 123

Query: 124 KALLLKQKQQQQKQQQQHED--NMNRVSSNDEKTMSTAEHEKQMAFMQPAMAMENQSWPT 181
           KAL+L+Q+ Q   QQQQ  +   M  V++ D   M  A+   +M FM     +E+Q  P 
Sbjct: 124 KALILEQEVQHHHQQQQQLEAGEMKMVNTIDHVKMHEAQ---EMYFM--YHNLEDQCSPV 178

Query: 182 MYQDIASWPSDHHQPAVIDELGLWGGLWTFDD 213
           M QD+ASW        V D  GLWGGLW  DD
Sbjct: 179 MTQDVASWADF----VVEDYYGLWGGLWNLDD 206

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451813|ref|XP_002278098.1| PREDICTED: myb-related protein 305 [Vitis vinifera] gi|298204457|emb|CBI16937.3| unnamed protein product [Vitis vinifera]

 Score =  243 bits (619), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 150/280 (53%), Positives = 179/280 (63%), Gaps = 62/280 (22%)

Query: 1   MGWGATTEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYL 60
           MGWG+   QGWRKGPWTPEEDKLL+E+V+  GEGRWSSVAR +GLNRSGKSCRLRWVNYL
Sbjct: 5   MGWGSVPVQGWRKGPWTPEEDKLLSEYVSSHGEGRWSSVARCSGLNRSGKSCRLRWVNYL 64

Query: 61  RPGLKRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEKSSQKQ 120
           RPGLKRG +T  EEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKK +  QK 
Sbjct: 65  RPGLKRGHITTMEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKNQKQQKP 124

Query: 121 EKRKALLLKQKQQQQKQQQQHEDNMNRVSSNDEKTMSTAEHEKQMAFMQPAMAMENQSWP 180
           + ++ L  K +QQQQ+QQ+ HE  +      +   M  A+ +      Q A++ME+Q  P
Sbjct: 125 KAQQPLEPKLQQQQQQQQEDHEIKL------ENGKMGEAQGK------QEAISMEDQCLP 172

Query: 181 TMYQDIASWPSDHHQ---------PAVIDEL---------------GLWGGLWTFDDTNG 216
            MYQ+I     D HQ         P ++++L               GLWGGLW  DDT  
Sbjct: 173 VMYQEI-----DDHQARQQVASMYPTILEDLCLPVTYQDHLQGEDQGLWGGLWNLDDT-- 225

Query: 217 RVDASTNCNKMAAAVQQNQAATFALGGDSS-NFCNGGYIF 255
            +D                  T + GG+SS N+ NGGYIF
Sbjct: 226 -ID-----------------HTISGGGNSSQNYYNGGYIF 247

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230123|ref|NP_189640.1| myb proto-oncogene protein [Arabidopsis thaliana] gi|14161421|gb|AAK54743.1|AF371980_1 putative transcription factor MYB121 [Arabidopsis thaliana] gi|9294205|dbj|BAB02107.1| MYB-related transcription factor-like protein [Arabidopsis thaliana] gi|41619270|gb|AAS10063.1| MYB transcription factor [Arabidopsis thaliana] gi|332644101|gb|AEE77622.1| myb proto-oncogene protein [Arabidopsis thaliana]

 Score =  237 bits (604), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 132/257 (51%), Positives = 170/257 (66%), Gaps = 17/257 (6%)

Query: 10  GWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQL 69
           G RKGPWT EEDKLL E+V   GEGRWS+VA+ AGLNRSGKSCRLRWVNYLRPGLKRGQ+
Sbjct: 26  GCRKGPWTLEEDKLLAEYVTSHGEGRWSTVAKCAGLNRSGKSCRLRWVNYLRPGLKRGQI 85

Query: 70  TPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKK-EKSSQKQEKRKALLL 128
           TPQEEGII+ELH+LWGNKWSTIARYLPGRTDNEIKNYWRTH+KK +KSS KQ+K K  L 
Sbjct: 86  TPQEEGIILELHSLWGNKWSTIARYLPGRTDNEIKNYWRTHYKKNQKSSSKQDKVKKSLS 145

Query: 129 KQKQQ---QQKQQQQHEDNMNRVSSNDEKTMSTAEHEKQMAFMQPAMAMENQSWPTMYQD 185
           +++QQ   + + Q Q E++ +++ S D   +   +H    +   P    +++ +  M Q 
Sbjct: 146 RKQQQVDLKPQPQAQSENHQSQLVSQDHMNIDN-DHNIASSLYYPTSVFDDKLY--MPQS 202

Query: 186 IASWPSDHHQPAVIDELGLWGGLWTFDDTNGRVDASTNCNKMAAAVQQN------QAATF 239
           +A+  SDH   ++IDE  LWG LW  D+ +       +    AA + +       +A + 
Sbjct: 203 VATTSSDH---SMIDEGHLWGSLWNLDEDDPHSFGGGSGQGTAADIDEKFPDSGIEAPSC 259

Query: 240 ALGGDS-SNFCNGGYIF 255
             G  S +    GGYIF
Sbjct: 260 GSGDYSYTGVYMGGYIF 276

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297815292|ref|XP_002875529.1| MYB121 [Arabidopsis lyrata subsp. lyrata] gi|297321367|gb|EFH51788.1| MYB121 [Arabidopsis lyrata subsp. lyrata]

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 138/261 (52%), Positives = 168/261 (64%), Gaps = 30/261 (11%)

Query: 10  GWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQL 69
           G RKGPWT EEDKLL E+V   GEGRWS+VA+ AGL RSGKSCRLRWVNYLRPGLKRGQ+
Sbjct: 26  GCRKGPWTLEEDKLLAEYVTSHGEGRWSTVAKCAGLKRSGKSCRLRWVNYLRPGLKRGQI 85

Query: 70  TPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHF-KKEKSSQKQEKRKALLL 128
           TPQEEGII+ELH+LWGNKWSTIARYLPGRTDNEIKNYWRTH+ KKEK S KQ+K K  L 
Sbjct: 86  TPQEEGIILELHSLWGNKWSTIARYLPGRTDNEIKNYWRTHYKKKEKISSKQDKVKRSLS 145

Query: 129 KQKQQQQKQQQQH-------EDNMNRVSSNDEKTMSTAEHEKQMAFMQPAMAMENQSWPT 181
           +++Q   K QQQ+       +D+MN    ND+   S        A   PA   ++Q   +
Sbjct: 146 RKQQMDLKPQQQNHQSQLVPQDHMN--IDNDQNIES--------ALYYPASVFDDQF--S 193

Query: 182 MYQDIASWPSDHHQPAVIDELGLWGGLWTFDDTNGRVDASTNCNKMAAAVQQN------Q 235
           M Q +A+  SDH   ++IDE  LWG LW  DD +       +  + A  + +       +
Sbjct: 194 MPQIVATTSSDH---SMIDEGHLWGSLWNLDDDDPHGFGGGSGQRTAENIAEKFPGSGIE 250

Query: 236 AATFALGGDS-SNFCNGGYIF 255
           A +   G  S + F  GGYIF
Sbjct: 251 APSCGSGDYSYTGFYMGGYIF 271

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120660|ref|XP_002330920.1| predicted protein [Populus trichocarpa] gi|222873114|gb|EEF10245.1| predicted protein [Populus trichocarpa]

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 136/219 (62%), Positives = 158/219 (72%), Gaps = 13/219 (5%)

Query: 1   MGWGATTEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYL 60
           MGWG   E+GWRKGPWTPEEDKLL E+V+L GEGRWSSV+R  GLNRSGKSCRLRWVNYL
Sbjct: 5   MGWG-IPEKGWRKGPWTPEEDKLLIEYVSLHGEGRWSSVSRCPGLNRSGKSCRLRWVNYL 63

Query: 61  RPGLKRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEKSSQKQ 120
           RPGLKRGQ+TPQEEGIIIELHAL GNKWSTIARYLPGRTDNEIKNYWRTH KK++ S ++
Sbjct: 64  RPGLKRGQITPQEEGIIIELHALLGNKWSTIARYLPGRTDNEIKNYWRTHSKKKEKSSQK 123

Query: 121 --EKRKALLLK-QKQQQQKQQQQHEDNMNRVSSNDEKTMSTAEHEKQMA---FMQPAMAM 174
             EKRKA +LK +++ QQ  QQQ +    ++ + D   ++T  HEK       M P   +
Sbjct: 124 QLEKRKAQILKQEEEHQQHLQQQQQQQQQQLEAGDMNMVNTIAHEKMHGAPEMMYP--TV 181

Query: 175 ENQSWPTMYQDIASWPSDHHQPAVIDELGLWGGLWTFDD 213
           E+Q  P M QD+ SW        V D   LWGG W  DD
Sbjct: 182 EDQCLPVMSQDVVSWADS----VVEDYYRLWGGFWNLDD 216

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|89953428|gb|ABD83304.1| Fgenesh protein 125 [Beta vulgaris]

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 109/139 (78%), Positives = 118/139 (84%), Gaps = 1/139 (0%)

Query: 2   GWGATTEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLR 61
            W    + GWRKGPWTPEEDKLL E+VNL GEGRWSSV+R AGLNRSGKSCRLRWVNYLR
Sbjct: 8   AWPVQGQTGWRKGPWTPEEDKLLIEYVNLHGEGRWSSVSRCAGLNRSGKSCRLRWVNYLR 67

Query: 62  PGLKRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHF-KKEKSSQKQ 120
           PGLKRGQ+TPQEEGIIIELHA+WGNKWSTIARYLPGRTDNEIKNYWRTHF KKE++ +  
Sbjct: 68  PGLKRGQITPQEEGIIIELHAIWGNKWSTIARYLPGRTDNEIKNYWRTHFKKKERTRKAS 127

Query: 121 EKRKALLLKQKQQQQKQQQ 139
           EKRK+  LK K   Q Q Q
Sbjct: 128 EKRKSQTLKPKPLVQPQLQ 146

Source: Beta vulgaris

Species: Beta vulgaris

Genus: Beta

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147765957|emb|CAN59954.1| hypothetical protein VITISV_006722 [Vitis vinifera]

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 125/195 (64%), Positives = 146/195 (74%), Gaps = 17/195 (8%)

Query: 1   MGWGATTEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYL 60
           MGWG+   QGWRKGPWTPEEDKLL+E+V+  GEGRWSSVAR +GLNRSGKSCRLRWVNYL
Sbjct: 1   MGWGSVPVQGWRKGPWTPEEDKLLSEYVSSHGEGRWSSVARCSGLNRSGKSCRLRWVNYL 60

Query: 61  RPGLKRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEKSSQKQ 120
           RPGLKRG +T  EEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKK +  QK 
Sbjct: 61  RPGLKRGHITTMEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKNQKQQKP 120

Query: 121 EKRKALLLKQKQQQQKQQQQHEDNMNRVSSNDEKTMSTAEHEKQMAFMQPAMAMENQSWP 180
           + ++ L  K +QQQQ+QQ+ HE  +      +   M  A+ +      Q A++ME+Q  P
Sbjct: 121 KAQQPLEPKLQQQQQQQQEDHEIKL------ENGKMGEAQGK------QEAISMEDQCLP 168

Query: 181 TMYQDIASWPSDHHQ 195
            MYQ+I     D HQ
Sbjct: 169 VMYQEI-----DDHQ 178

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567132|ref|XP_003551775.1| PREDICTED: transcription factor MYB59-like [Glycine max]

 Score =  219 bits (558), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 131/248 (52%), Positives = 168/248 (67%), Gaps = 21/248 (8%)

Query: 7   TEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKR 66
           TE+ WRKGPWT EEDKLL+E+V   GEGRWSSVA+  GL R+GKSCRLRWVNYLRPGLKR
Sbjct: 7   TEKEWRKGPWTGEEDKLLSEYVCFNGEGRWSSVAQCTGLKRNGKSCRLRWVNYLRPGLKR 66

Query: 67  GQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEKSS--QKQEKRK 124
           GQLTP E GIIIELHA++GNKWSTIA+YLPGRTDN+IKNYWRTHF+K   S  +K E +K
Sbjct: 67  GQLTPIEVGIIIELHAIFGNKWSTIAKYLPGRTDNDIKNYWRTHFEKSGKSKHKKLEMQK 126

Query: 125 ALLLKQKQQQQKQQQQHEDNMNRVSSNDEKTMSTAEHE------KQMAFMQPAMAMENQS 178
           A +LKQ +Q+Q+ Q   E ++  + S++E    T  +E      K++ FM P M  +   
Sbjct: 127 AKVLKQLKQKQQPQ---EYDVKSIKSHEETKNETKSYETENNKQKEVDFMCPTMEHQYIV 183

Query: 179 WPTMYQDIAS-WPSDHHQPAVIDELGLWGGLWTFDDTNGRVDASTNCNKMAAAVQQNQAA 237
            P+M++  +S WP       V+ + G W  LW FDD      ++   N+ + +V  NQ A
Sbjct: 184 -PSMHEGFSSTWPD-----TVLGDDGSWFSLWDFDDEPQC--SADYVNQFSESVVPNQ-A 234

Query: 238 TFALGGDS 245
           TF +G DS
Sbjct: 235 TFGVGEDS 242

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806134|ref|NP_001240937.1| uncharacterized protein LOC100785540 [Glycine max] gi|255647636|gb|ACU24281.1| unknown [Glycine max]

 Score =  213 bits (542), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 129/252 (51%), Positives = 164/252 (65%), Gaps = 21/252 (8%)

Query: 7   TEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKR 66
           T++GWRKGPWT EEDKLL+E+V+L G+GRWSSVA+  GLNRSGKSCRLRWVNYLRPGLK+
Sbjct: 7   TQKGWRKGPWTGEEDKLLSEYVSLHGDGRWSSVAKFTGLNRSGKSCRLRWVNYLRPGLKK 66

Query: 67  GQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHF-KKEKSSQKQE---- 121
           GQLTP EE IIIELHA  GNKWSTIA+YL GRTDNEIKNYWRTHF K+E+S  K++    
Sbjct: 67  GQLTPLEEEIIIELHATLGNKWSTIAKYLSGRTDNEIKNYWRTHFGKRERSKHKKKLQRP 126

Query: 122 KRKALLLKQKQQQQKQQQQHEDNMNRVSSNDEKTMSTAEHEKQ------MAFMQPAMAME 175
           K K +L + K +QQ++QQ  E ++  + S++E    T   E Q      M FM P    +
Sbjct: 127 KVKRVLKQLKHKQQQEQQPQEYDIKSIMSHEETVNETKSFETQNCKQQEMGFMYPTTEHQ 186

Query: 176 NQSWPTMYQDIAS-WPSDHHQPAVIDELGLWGGLWTFDDTNGRVDASTNCNKMAAAVQQN 234
                ++++  +S W     Q + + +   W  LW FD+  G  D     +K A   Q  
Sbjct: 187 YTVPNSLHEGFSSTW-----QDSTLVDDDSWFSLWDFDEPQGFSDYVDQFSKCAMPNQ-- 239

Query: 235 QAATFALGGDSS 246
             ATF +GGD S
Sbjct: 240 --ATFRVGGDYS 249

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
TAIR|locus:2089812	276	MYB121 "myb domain protein 121	0.934	0.876	0.459	3e-53
TAIR|locus:2087183	269	MYB305 "myb domain protein 305	0.420	0.405	0.790	1.6e-49
TAIR|locus:2140847	261	MYB79 "myb domain protein 79"	0.401	0.398	0.778	3.3e-47
TAIR|locus:2075236	256	MYB48 "myb domain protein 48"	0.397	0.402	0.708	6.8e-40
TAIR|locus:2174324	235	MYB59 "myb domain protein 59"	0.397	0.438	0.699	1.8e-39
TAIR|locus:2202633	243	MYB112 "myb domain protein 112	0.378	0.403	0.683	1.9e-39
TAIR|locus:2065226	273	MYB2 "AT2G47190" [Arabidopsis	0.378	0.358	0.653	4.5e-38
TAIR|locus:2032975	283	MYB116 "myb domain protein 116	0.378	0.346	0.683	1.9e-37
TAIR|locus:2084269	323	MYB108 "myb domain protein 108	0.393	0.315	0.627	1.9e-37
TAIR|locus:2199357	286	MYB62 "myb domain protein 62"	0.378	0.342	0.693	3.9e-37

TAIR|locus:2089812 MYB121 "myb domain protein 121" [Arabidopsis thaliana (taxid:3702)]

 Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
 Identities = 119/259 (45%), Positives = 151/259 (58%)

Query:     8 EQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRG 67
             +QG RKGPWT EEDKLL E+V   GEGRWS+VA+ AGLNRSGKSCRLRWVNYLRPGLKRG
Sbjct:    24 QQGCRKGPWTLEEDKLLAEYVTSHGEGRWSTVAKCAGLNRSGKSCRLRWVNYLRPGLKRG 83

Query:    68 QLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFXXXXXXXXXXXXXXXX 127
             Q+TPQEEGII+ELH+LWGNKWSTIARYLPGRTDNEIKNYWRTH+                
Sbjct:    84 QITPQEEGIILELHSLWGNKWSTIARYLPGRTDNEIKNYWRTHYKKNQKSSSKQDKVKKS 143

Query:   128 XXXXXXXXXXX----XXHEDNMNRVSSNDEKTMSTAEHEKQMAFMQPAMAMENQSWPTMY 183
                               E++ +++ S D   +   +H    +   P    +++ +  M 
Sbjct:   144 LSRKQQQVDLKPQPQAQSENHQSQLVSQDHMNIDN-DHNIASSLYYPTSVFDDKLY--MP 200

Query:   184 QDIASWPSDHHQPAVIDELGLWGGLWTFDDTNGRVDASTNCNKMAAAVQQN------QAA 237
             Q +A+  SDH   ++IDE  LWG LW  D+ +       +    AA + +       +A 
Sbjct:   201 QSVATTSSDH---SMIDEGHLWGSLWNLDEDDPHSFGGGSGQGTAADIDEKFPDSGIEAP 257

Query:   238 TFALGGDS-SNFCNGGYIF 255
             +   G  S +    GGYIF
Sbjct:   258 SCGSGDYSYTGVYMGGYIF 276

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

TAIR|locus:2087183 MYB305 "myb domain protein 305" [Arabidopsis thaliana (taxid:3702)]

 Score = 492 (178.3 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
 Identities = 87/110 (79%), Positives = 96/110 (87%)

Query:     2 GWGATTEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLR 61
             GWG   E+GWRKGPWT EED+LL ++V L GEGRW+SVAR AGL R+GKSCRLRWVNYLR
Sbjct:    10 GWGMV-EEGWRKGPWTAEEDRLLIDYVQLHGEGRWNSVARLAGLKRNGKSCRLRWVNYLR 68

Query:    62 PGLKRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHF 111
             P LKRGQ+TP EE II+ELHA WGN+WSTIAR LPGRTDNEIKNYWRTHF
Sbjct:    69 PDLKRGQITPHEETIILELHAKWGNRWSTIARSLPGRTDNEIKNYWRTHF 118

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2140847 MYB79 "myb domain protein 79" [Arabidopsis thaliana (taxid:3702)]

 Score = 466 (169.1 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
 Identities = 81/104 (77%), Positives = 92/104 (88%)

Query:     8 EQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRG 67
             E+ WRKGPWT EED+LL E+V + GEGRW+SV++ AGL R+GKSCRLRWVNYLRP LKRG
Sbjct:     3 EEVWRKGPWTAEEDRLLIEYVRVHGEGRWNSVSKLAGLKRNGKSCRLRWVNYLRPDLKRG 62

Query:    68 QLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHF 111
             Q+TP EE II+ELHA WGN+WSTIAR LPGRTDNEIKNYWRTHF
Sbjct:    63 QITPHEESIILELHAKWGNRWSTIARSLPGRTDNEIKNYWRTHF 106

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2075236 MYB48 "myb domain protein 48" [Arabidopsis thaliana (taxid:3702)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 73/103 (70%), Positives = 87/103 (84%)

Query:     8 EQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRG 67
             E+G RKGPWT +ED LL   V+L G+ RW  +A+ +GLNR+GKSCRLRWVNYL PGLKRG
Sbjct:     4 EEGNRKGPWTEQEDILLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRG 63

Query:    68 QLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTH 110
             ++TPQEE +++ELHA WGN+WS IAR LPGRTDNEIKNYWRTH
Sbjct:    64 KMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTH 106

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS;TAS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

TAIR|locus:2174324 MYB59 "myb domain protein 59" [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 72/103 (69%), Positives = 87/103 (84%)

Query:     8 EQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRG 67
             ++ +RKGPWT +ED LL   V+L G+ RW  VA+ +GLNR+GKSCRLRWVNYL PGLKRG
Sbjct:     5 QEEYRKGPWTEQEDILLVNFVHLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPGLKRG 64

Query:    68 QLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTH 110
             ++TPQEE +++ELHA WGN+WS IAR LPGRTDNEIKNYWRTH
Sbjct:    65 KMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTH 107

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009723 "response to ethylene stimulus" evidence=IEP;RCA

GO:0009739 "response to gibberellin stimulus" evidence=IEP;RCA

GO:0009751 "response to salicylic acid stimulus" evidence=IEP;RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0010200 "response to chitin" evidence=IEP

GO:0009651 "response to salt stress" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

TAIR|locus:2202633 MYB112 "myb domain protein 112" [Arabidopsis thaliana (taxid:3702)]

 Score = 398 (145.2 bits), Expect = 1.9e-39, Sum P(2) = 1.9e-39
 Identities = 67/98 (68%), Positives = 86/98 (87%)

Query:    12 RKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTP 71
             R+GPWT EED  L  +++L GEGRW+S++RSAGLNR+GKSCRLRW+NYLRP ++RG ++ 
Sbjct:    33 RRGPWTVEEDMKLVSYISLHGEGRWNSLSRSAGLNRTGKSCRLRWLNYLRPDIRRGDISL 92

Query:    72 QEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRT 109
             QE+ II+ELH+ WGN+WS IA++LPGRTDNEIKNYWRT
Sbjct:    93 QEQFIILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRT 130

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009830 "cell wall modification involved in abscission" evidence=RCA

TAIR|locus:2065226 MYB2 "AT2G47190" [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 4.5e-38, Sum P(2) = 4.5e-38
 Identities = 64/98 (65%), Positives = 84/98 (85%)

Query:    12 RKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTP 71
             RKGPWT EED +L   V++ G+ RW+ +ARS+GL R+GKSCRLRW+NYLRP ++RG +T 
Sbjct:    21 RKGPWTEEEDAILVNFVSIHGDARWNHIARSSGLKRTGKSCRLRWLNYLRPDVRRGNITL 80

Query:    72 QEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRT 109
             +E+ +I++LH+LWGN+WS IA+YLPGRTDNEIKNYWRT
Sbjct:    81 EEQFMILKLHSLWGNRWSKIAQYLPGRTDNEIKNYWRT 118

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA;IMP

GO:0005516 "calmodulin binding" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP;RCA

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0007165 "signal transduction" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009414 "response to water deprivation" evidence=IEP;RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0001046 "core promoter sequence-specific DNA binding" evidence=IDA

GO:0016036 "cellular response to phosphate starvation" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2032975 MYB116 "myb domain protein 116" [Arabidopsis thaliana (taxid:3702)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 67/98 (68%), Positives = 86/98 (87%)

Query:    12 RKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTP 71
             RKGPWT EED LLT +++  GEGRW+ +A+S+GL R+GKSCRLRW+NYL+P +KRG LTP
Sbjct:    19 RKGPWTLEEDTLLTNYISHNGEGRWNLLAKSSGLKRAGKSCRLRWLNYLKPDIKRGNLTP 78

Query:    72 QEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRT 109
             QE+ +I+ELH+ WGN+WS I++YLPGRTDN+IKNYWRT
Sbjct:    79 QEQLLILELHSKWGNRWSKISKYLPGRTDNDIKNYWRT 116

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2084269 MYB108 "myb domain protein 108" [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
 Identities = 64/102 (62%), Positives = 83/102 (81%)

Query:     8 EQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRG 67
             E   ++GPWT EED  L  ++   GEGRW+S++R AGL R+GKSCRLRW+NYLRP ++RG
Sbjct:    16 EMDLKRGPWTAEEDFKLMNYIATNGEGRWNSLSRCAGLQRTGKSCRLRWLNYLRPDVRRG 75

Query:    68 QLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRT 109
              +T +E+ +I+ELH+ WGN+WS IA+YLPGRTDNEIKNYWRT
Sbjct:    76 NITLEEQLLILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRT 117

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009620 "response to fungus" evidence=IMP

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP;RCA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2199357 MYB62 "myb domain protein 62" [Arabidopsis thaliana (taxid:3702)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 68/98 (69%), Positives = 84/98 (85%)

Query:    12 RKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTP 71
             R+GPWT EED LLT ++   GEGRW+ VA+ AGL R+GKSCRLRW+NYL+P ++RG LTP
Sbjct:    20 RRGPWTLEEDTLLTNYILHNGEGRWNHVAKCAGLKRTGKSCRLRWLNYLKPDIRRGNLTP 79

Query:    72 QEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRT 109
             QE+ +I+ELH+ WGN+WS IA+YLPGRTDNEIKNYWRT
Sbjct:    80 QEQLLILELHSKWGNRWSKIAQYLPGRTDNEIKNYWRT 117

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009686 "gibberellin biosynthetic process" evidence=IMP

GO:0016036 "cellular response to phosphate starvation" evidence=IEP

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	259
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	2e-43
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	4e-42
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	7e-15
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	6e-14
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	4e-12
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	8e-12
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	2e-10
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	4e-09
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	1e-08
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	8e-08
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	8e-05
cd11660	50	cd11660, SANT_TRF, Telomere repeat binding factor-	0.002

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score =  152 bits (385), Expect = 2e-43
 Identities = 75/161 (46%), Positives = 102/161 (63%), Gaps = 2/161 (1%)

Query: 8   EQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRG 67
           +Q  RKG W+PEED+ L  H+   G G WSSV + AGL R GKSCRLRW+NYLRP LKRG
Sbjct: 9   KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRG 68

Query: 68  QLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEKSSQKQEKRKALL 127
             + QEE +IIELHA+ GN+WS IA  LPGRTDNEIKN W +  KK+   +  +      
Sbjct: 69  TFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKP 128

Query: 128 LKQKQQQQKQQQQHEDNMNRVSS--NDEKTMSTAEHEKQMA 166
           L + +  + +    +D  ++ SS  ++E  +  A++ K +A
Sbjct: 129 LSEVENGEDKNPPTDDKSDKASSVVSNELNLLKADNSKPLA 169

Length = 459

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score =  144 bits (363), Expect = 4e-42
 Identities = 64/108 (59%), Positives = 81/108 (75%)

Query: 7   TEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKR 66
           T+ G ++GPWT EED++L   +   GEGRW S+ + AGL R GKSCRLRW+NYLRP +KR
Sbjct: 19  TKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKR 78

Query: 67  GQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKE 114
           G +T  EE +I+ LH L GN+WS IA  +PGRTDNEIKNYW TH +K+
Sbjct: 79  GGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKK 126

Length = 249

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 73.3 bits (180), Expect = 7e-15
 Identities = 41/155 (26%), Positives = 61/155 (39%), Gaps = 13/155 (8%)

Query: 13  KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQ 72
            G W   ED+ L   V  LG   WS VA       +GK    RW N+L P LK+   + +
Sbjct: 20  GGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNWSEE 78

Query: 73  EEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYW--------RTHFKKEKSSQKQEKRK 124
           E+  +I+L    G +WSTIA Y   RT  +    +         TH  K +   + +K  
Sbjct: 79  EDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVNTLEDLSSTHDSKLQRRNEFDKID 138

Query: 125 ALLLKQKQQQQKQQQQHEDNMNRVSSNDEKTMSTA 159
                  ++       +ED +     N E +    
Sbjct: 139 PFNENSARRPDI----YEDELLEREVNREASYRLR 169

Length = 512

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 64.1 bits (157), Expect = 6e-14
 Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 13 KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYL 60
          +GPWTPEED+LL E V   G G WS +A+     R+   C+ RW NYL
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLP-GRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 59.2 bits (144), Expect = 4e-12
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 13 KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRP 62
          KG WT EED+LL E V   G+  W  +A+     R+ + CR RW N L+P
Sbjct: 1  KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 58.3 bits (142), Expect = 8e-12
 Identities = 23/46 (50%), Positives = 31/46 (67%), Gaps = 1/46 (2%)

Query: 66  RGQLTPQEEGIIIELHALWGNK-WSTIARYLPGRTDNEIKNYWRTH 110
           RG  TP+E+ ++IE     GN  WS IA++LPGRTDN+ KN W  +
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNY 46

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 54.9 bits (133), Expect = 2e-10
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 15 PWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYL 60
          PWT EED+LL E V   G+  W  +A+     R+ K CR RW N L
Sbjct: 1  PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 51.1 bits (123), Expect = 4e-09
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 70  TPQEEGIIIELHALWG-NKWSTIARYLPGRTDNEIKNYWRTHFKK 113
           T +E+ ++IEL   +G N W  IA+ LPGRT  + +  WR   K 
Sbjct: 5   TEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 49.5 bits (119), Expect = 1e-08
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 70  TPQEEGIIIELHALWG-NKWSTIARYLPGRTDNEIKNYWRTHF 111
           T +E+ +++E    +G N W  IA+ LPGRT  + +  WR   
Sbjct: 3   TEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 47.7 bits (114), Expect = 8e-08
 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 16 WTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQEE 74
          WT EED+ L + V   G   W  +A    L R+  +CR RW   LRP   RG  T +E+
Sbjct: 1  WTEEEDEKLLKLVEKYG-NDWKQIAEE--LGRTPSACRDRWRRKLRPKRSRGPWTKEED 56

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 39.2 bits (92), Expect = 8e-05
 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 5/58 (8%)

Query: 70  TPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRT----HFKKEKSSQKQEKR 123
           T +E+  +++L   +GN W  IA  L GRT +  ++ WR        +   ++++++R
Sbjct: 2   TEEEDEKLLKLVEKYGNDWKQIAEEL-GRTPSACRDRWRRKLRPKRSRGPWTKEEDQR 58

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

 Score = 35.2 bits (82), Expect = 0.002
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 15 PWTPEEDKLLTEHVNLLGEGRWSSVARSAGL--NRSGKSCRLRWVN 58
           WT EED+ L E V   G G W+ + +      NR+    + +W N
Sbjct: 2  KWTDEEDEALVEGVEKYGVGNWAKILKDYFFVNNRTSVDLKDKWRN 47

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	259
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.98
PLN03212	249	Transcription repressor MYB5; Provisional	99.97
PLN03091	459	hypothetical protein; Provisional	99.97
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.83
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.81
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.67
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.54
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.53
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.5
PLN03212	249	Transcription repressor MYB5; Provisional	99.45
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.45
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.41
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.36
PLN03091	459	hypothetical protein; Provisional	99.33
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.28
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.23
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.22
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.15
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.15
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.09
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.0
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.99
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	97.93
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.83
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.69
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.58
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	97.5
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	97.17
KOG1279	506	consensus Chromatin remodeling factor subunit and	97.02
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	96.95
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.92
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.83
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.78
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.7
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	96.7
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.67
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.32
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	95.76
PRK13923	170	putative spore coat protein regulator protein YlbO	95.67
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	95.65
PRK13923	170	putative spore coat protein regulator protein YlbO	95.59
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.58
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.38
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	94.32
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	94.08
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	93.26
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	91.07
KOG4282	345	consensus Transcription factor GT-2 and related pr	90.15
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	90.06
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	89.33
KOG2656	445	consensus DNA methyltransferase 1-associated prote	88.12
PF08281	54	Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013	87.67
KOG1194	534	consensus Predicted DNA-binding protein, contains	85.01
KOG4167	907	consensus Predicted DNA-binding protein, contains	84.85
KOG4282	345	consensus Transcription factor GT-2 and related pr	81.37

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.98  E-value=1.5e-32  Score=246.02  Aligned_cols=109  Identities=54%  Similarity=0.950  Sum_probs=104.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCCCcCCCCCHHhHHHHHHHHHHcCCC
Q 047854            8 EQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQEEGIIIELHALWGNK   87 (259)
Q Consensus         8 ~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~~   87 (259)
                      ++.+.||+||+|||.+|+++|.+||.++|..||+.++++|++++||.||.+||+|.+++|.||+|||.+|++++..+|++
T Consensus         4 k~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNr   83 (238)
T KOG0048|consen    4 NPELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNR   83 (238)
T ss_pred             CccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcH
Confidence            45566899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCCHHHHHHHHHHhhhcccc
Q 047854           88 WSTIARYLPGRTDNEIKNYWRTHFKKEKS  116 (259)
Q Consensus        88 W~~Ia~~l~gRT~~qcknrw~~~lkk~~~  116 (259)
                      |+.||++|||||++.|||+|+..++++..
T Consensus        84 Ws~IA~~LPGRTDNeIKN~Wnt~lkkkl~  112 (238)
T KOG0048|consen   84 WSLIAGRLPGRTDNEVKNHWNTHLKKKLL  112 (238)
T ss_pred             HHHHHhhCCCcCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999977543

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.97  E-value=1.7e-32  Score=244.19  Aligned_cols=108  Identities=59%  Similarity=1.143  Sum_probs=103.7

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCCCcCCCCCHHhHHHHHHHHHHcCC
Q 047854            7 TEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQEEGIIIELHALWGN   86 (259)
Q Consensus         7 l~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~   86 (259)
                      -++++++++||+|||++|+++|.+||..+|..||+.++++||++|||+||.++|+|.+++++||+|||++|++++.+||+
T Consensus        19 ~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~Gn   98 (249)
T PLN03212         19 TKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGN   98 (249)
T ss_pred             ccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhccc
Confidence            46889999999999999999999999989999999986599999999999999999999999999999999999999999


Q ss_pred             CHHHHHhhCCCCCHHHHHHHHHHhhhcc
Q 047854           87 KWSTIARYLPGRTDNEIKNYWRTHFKKE  114 (259)
Q Consensus        87 ~W~~Ia~~l~gRT~~qcknrw~~~lkk~  114 (259)
                      +|+.||++|||||+++||+||+.++++.
T Consensus        99 KWs~IAk~LpGRTDnqIKNRWns~LrK~  126 (249)
T PLN03212         99 RWSLIAGRIPGRTDNEIKNYWNTHLRKK  126 (249)
T ss_pred             cHHHHHhhcCCCCHHHHHHHHHHHHhHH
Confidence            9999999999999999999999998874

>PLN03091 hypothetical protein; Provisional

Probab=99.97  E-value=7e-31  Score=249.00  Aligned_cols=108  Identities=62%  Similarity=1.113  Sum_probs=104.0

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCCCcCCCCCHHhHHHHHHHHHHcCC
Q 047854            7 TEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQEEGIIIELHALWGN   86 (259)
Q Consensus         7 l~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~   86 (259)
                      -+++++||+||+|||++|+++|.+||..+|..||+.++++|+++|||+||.++|+|.+++++||+|||.+|++++++||+
T Consensus         8 ~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~Gn   87 (459)
T PLN03091          8 YKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGN   87 (459)
T ss_pred             cCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCc
Confidence            46899999999999999999999999999999999987699999999999999999999999999999999999999999


Q ss_pred             CHHHHHhhCCCCCHHHHHHHHHHhhhcc
Q 047854           87 KWSTIARYLPGRTDNEIKNYWRTHFKKE  114 (259)
Q Consensus        87 ~W~~Ia~~l~gRT~~qcknrw~~~lkk~  114 (259)
                      +|+.||++|+|||+++||+||+.++++.
T Consensus        88 KWskIAk~LPGRTDnqIKNRWnslLKKk  115 (459)
T PLN03091         88 RWSQIAAQLPGRTDNEIKNLWNSCLKKK  115 (459)
T ss_pred             chHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998873

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.83  E-value=6.7e-21  Score=186.86  Aligned_cols=132  Identities=22%  Similarity=0.418  Sum_probs=123.1

Q ss_pred             CccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccch----------------------------
Q 047854            3 WGATTEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRL----------------------------   54 (259)
Q Consensus         3 W~~~l~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~----------------------------   54 (259)
                      |.++++|+++|--|++|||++|+.+...++..+|..||..|+.+|+..||..                            
T Consensus       243 W~n~l~P~~nk~~WS~EE~E~L~AiA~A~~~~~W~~IA~~Lgt~RS~yQC~~kF~t~~~~L~ekeWsEEed~kL~alV~~  322 (939)
T KOG0049|consen  243 WYNELNPKWNKEHWSNEEVEKLKALAEAPKFVSWPMIALNLGTNRSSYQCMEKFKTEVSQLSEKEWSEEEDTKLIALVKI  322 (939)
T ss_pred             HhhhcCCccchhccChHHHHHHHHHHhccccccHHHHHHHhCCCcchHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence            8999999999999999999999999999999999999999997799999975                            


Q ss_pred             --------------------------hhhhhccCCCcCCCCCHHhHHHHHHHHHHcCCC-HHHHHhhCCCCCHHHHHHHH
Q 047854           55 --------------------------RWVNYLRPGLKRGQLTPQEEGIIIELHALWGNK-WSTIARYLPGRTDNEIKNYW  107 (259)
Q Consensus        55 --------------------------Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~~-W~~Ia~~l~gRT~~qcknrw  107 (259)
                                                ||...|+|++++|+||++||.+|+.+|.+||.+ |-+|-..+|||++.|||.||
T Consensus       323 ~~~nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY  402 (939)
T KOG0049|consen  323 TSINSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERY  402 (939)
T ss_pred             hhccCccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHH
Confidence                                      777779999999999999999999999999976 99999999999999999999


Q ss_pred             HHhhhccccchhhhHHHHHHHHHHHHH
Q 047854          108 RTHFKKEKSSQKQEKRKALLLKQKQQQ  134 (259)
Q Consensus       108 ~~~lkk~~~~~~~~k~e~~~l~~~~~q  134 (259)
                      .+.+....+.++|+..++..+...+.+
T Consensus       403 ~nvL~~s~K~~rW~l~edeqL~~~V~~  429 (939)
T KOG0049|consen  403 TNVLNRSAKVERWTLVEDEQLLYAVKV  429 (939)
T ss_pred             HHHHHHhhccCceeecchHHHHHHHHH
Confidence            999999999999999888777766655

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.81  E-value=1.7e-20  Score=184.00  Aligned_cols=108  Identities=27%  Similarity=0.455  Sum_probs=101.0

Q ss_pred             CCccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCCCcCCCCCHHhHHHHHHHH
Q 047854            2 GWGATTEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQEEGIIIELH   81 (259)
Q Consensus         2 rW~~~l~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v   81 (259)
                      ||.++|+|++++|+||++||-+|..+|.+||..+|.+|-..+| ||+..|||+||.++|+...+++.||-.||..|+.+|
T Consensus       349 R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vP-nRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~~V  427 (939)
T KOG0049|consen  349 RFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVP-NRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLYAV  427 (939)
T ss_pred             hheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcC-CccHHHHHHHHHHHHHHhhccCceeecchHHHHHHH
Confidence            8999999999999999999999999999999999999999999 999999999999999999999999999999999999


Q ss_pred             HHcC-CCHHHHHhhCCCCCHH---HHHHHHHHh
Q 047854           82 ALWG-NKWSTIARYLPGRTDN---EIKNYWRTH  110 (259)
Q Consensus        82 ~~~G-~~W~~Ia~~l~gRT~~---qcknrw~~~  110 (259)
                      .+|| ++|.+||..||.||..   .||.|+..+
T Consensus       428 ~~YG~g~WakcA~~Lp~~t~~q~~rrR~R~~~~  460 (939)
T KOG0049|consen  428 KVYGKGNWAKCAMLLPKKTSRQLRRRRLRLIAA  460 (939)
T ss_pred             HHHccchHHHHHHHccccchhHHHHHHHHHHHH
Confidence            9999 5699999999999994   455555333

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.67  E-value=6.6e-17  Score=114.94  Aligned_cols=60  Identities=47%  Similarity=0.854  Sum_probs=55.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCCCcCCCCCHHhHHHH
Q 047854           16 WTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQEEGII   77 (259)
Q Consensus        16 WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l~k~~WT~eED~~L   77 (259)
                      ||+|||++|+.+|..||. +|..||+.|+ .||+.+|+.||.++|.|.+++++||.+||.+|
T Consensus         1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~l~-~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGN-DWKKIAEHLG-NRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS--HHHHHHHST-TS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCc-CHHHHHHHHC-cCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            999999999999999997 8999999997 89999999999999999999999999999987

...

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.54  E-value=7.9e-15  Score=143.36  Aligned_cols=105  Identities=31%  Similarity=0.535  Sum_probs=99.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCCCcCCCCCHHhHHHHHHHHHHcCCC
Q 047854            8 EQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQEEGIIIELHALWGNK   87 (259)
Q Consensus         8 ~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~~   87 (259)
                      .-..+.|.|+..||+.|..+|..||..+|.+||..+. -|+++||+.||.++++|.+++..|+.+||..|+.+..++|..
T Consensus        15 ~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~-~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~   93 (512)
T COG5147          15 QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQ   93 (512)
T ss_pred             cceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhc-ccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCch
Confidence            3456789999999999999999999999999999998 699999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCCHHHHHHHHHHhhhc
Q 047854           88 WSTIARYLPGRTDNEIKNYWRTHFKK  113 (259)
Q Consensus        88 W~~Ia~~l~gRT~~qcknrw~~~lkk  113 (259)
                      |+.||.++++||..+|.+||...+..
T Consensus        94 wstia~~~d~rt~~~~~ery~~~~~~  119 (512)
T COG5147          94 WSTIADYKDRRTAQQCVERYVNTLED  119 (512)
T ss_pred             hhhhccccCccchHHHHHHHHHHhhh
Confidence            99999999999999999999977665

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.53  E-value=5e-15  Score=142.90  Aligned_cols=101  Identities=26%  Similarity=0.589  Sum_probs=96.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCCCcCCCCCHHhHHHHHHHHHHcCCCHHH
Q 047854           11 WRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQEEGIIIELHALWGNKWST   90 (259)
Q Consensus        11 ~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~~W~~   90 (259)
                      ++.|-|+.-||+.|..+|.+||.+.|++||+.+. -+|++||+.||..+|+|.+++..|+.+||.+||.+.+.....|..
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~-~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrt   83 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLN-RKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRT   83 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHh-hcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccch
Confidence            4668899999999999999999999999999998 899999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCCHHHHHHHHHHhhhc
Q 047854           91 IARYLPGRTDNEIKNYWRTHFKK  113 (259)
Q Consensus        91 Ia~~l~gRT~~qcknrw~~~lkk  113 (259)
                      |+..+ |||.+||-.||..++-.
T Consensus        84 Ia~i~-gr~~~qc~eRy~~ll~~  105 (617)
T KOG0050|consen   84 IADIM-GRTSQQCLERYNNLLDV  105 (617)
T ss_pred             HHHHh-hhhHHHHHHHHHHHHHH
Confidence            99999 99999999999888753

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.50  E-value=5e-14  Score=100.05  Aligned_cols=60  Identities=32%  Similarity=0.557  Sum_probs=53.0

Q ss_pred             CCHHhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhhhccccchhhhHHHHHHH
Q 047854           69 LTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEKSSQKQEKRKALLL  128 (259)
Q Consensus        69 WT~eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~lkk~~~~~~~~k~e~~~l  128 (259)
                      ||++||.+|+++|.+||.+|..||+.|+.||+.+|++||+..+++..+..+|+.+++..|
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            999999999999999999999999999669999999999998888888899999887654

...

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.45  E-value=1.8e-13  Score=122.61  Aligned_cols=84  Identities=15%  Similarity=0.336  Sum_probs=72.8

Q ss_pred             cccCCCccccchhhhhhccCCCcCCCCCHHhHHHHHHHHHHcC-CCHHHHHhhC-CCCCHHHHHHHHHHhhhccccchhh
Q 047854           43 AGLNRSGKSCRLRWVNYLRPGLKRGQLTPQEEGIIIELHALWG-NKWSTIARYL-PGRTDNEIKNYWRTHFKKEKSSQKQ  120 (259)
Q Consensus        43 l~~gRt~~Qcr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G-~~W~~Ia~~l-~gRT~~qcknrw~~~lkk~~~~~~~  120 (259)
                      ++ +|++.-|.       ++.+++++||+|||++|+++|++|| .+|+.||+.+ ++||..||+.||.++|++.+++++|
T Consensus        10 ~~-~~~~pcc~-------K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpW   81 (249)
T PLN03212         10 VS-KKTTPCCT-------KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGI   81 (249)
T ss_pred             CC-CCCCCCcc-------cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCC
Confidence            44 56665443       2478999999999999999999999 5799999998 6999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHH
Q 047854          121 EKRKALLLKQKQQQ  134 (259)
Q Consensus       121 ~k~e~~~l~~~~~q  134 (259)
                      +.+|+.++...+..
T Consensus        82 T~EED~lLlel~~~   95 (249)
T PLN03212         82 TSDEEDLILRLHRL   95 (249)
T ss_pred             ChHHHHHHHHHHHh
Confidence            99999888776644

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.45  E-value=4.2e-14  Score=96.66  Aligned_cols=48  Identities=42%  Similarity=0.801  Sum_probs=43.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhc
Q 047854           13 KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYL   60 (259)
Q Consensus        13 kg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L   60 (259)
                      |++||+|||++|+++|..||.++|..||..|+++||+.||+.||.++|
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            689999999999999999999669999999988999999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.41  E-value=3.3e-13  Score=92.20  Aligned_cols=46  Identities=28%  Similarity=0.638  Sum_probs=41.9

Q ss_pred             CCCCCHHhHHHHHHHHHHcCCC-HHHHHhhCC-CCCHHHHHHHHHHhh
Q 047854           66 RGQLTPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTHF  111 (259)
Q Consensus        66 k~~WT~eED~~Ll~~v~~~G~~-W~~Ia~~l~-gRT~~qcknrw~~~l  111 (259)
                      +++||++||.+|++++.+||.+ |..||..|+ +||..||++||++++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            5799999999999999999999 999999999 999999999998764

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.36  E-value=9.7e-13  Score=130.17  Aligned_cols=100  Identities=25%  Similarity=0.528  Sum_probs=91.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCC--CcCCCCCHHhHHHHHHHHH-------
Q 047854           12 RKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPG--LKRGQLTPQEEGIIIELHA-------   82 (259)
Q Consensus        12 rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~--l~k~~WT~eED~~Ll~~v~-------   82 (259)
                      .+|.||+||++.|..+|..+|. +|..|++.|  ||.+..|++||+++..++  .+++.||.||++.|+.+|.       
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g~-~W~~Ig~~l--gr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~  459 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHGN-DWKEIGKAL--GRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREAL  459 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhcc-cHHHHHHHH--ccCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhh
Confidence            8999999999999999999999 899999999  599999999999999887  4899999999999999995       


Q ss_pred             Hc-------------------CCCHHHHHhhCCCCCHHHHHHHHHHhhhcc
Q 047854           83 LW-------------------GNKWSTIARYLPGRTDNEIKNYWRTHFKKE  114 (259)
Q Consensus        83 ~~-------------------G~~W~~Ia~~l~gRT~~qcknrw~~~lkk~  114 (259)
                      .+                   +-.|+.|++.+.+|+.-||+.+|..++...
T Consensus       460 q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~  510 (607)
T KOG0051|consen  460 QPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSP  510 (607)
T ss_pred             cccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhH
Confidence            33                   114999999999999999999999998863

>PLN03091 hypothetical protein; Provisional

Probab=99.33  E-value=2.1e-12  Score=123.54  Aligned_cols=73  Identities=14%  Similarity=0.332  Sum_probs=67.0

Q ss_pred             CCCcCCCCCHHhHHHHHHHHHHcCC-CHHHHHhhC-CCCCHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHH
Q 047854           62 PGLKRGQLTPQEEGIIIELHALWGN-KWSTIARYL-PGRTDNEIKNYWRTHFKKEKSSQKQEKRKALLLKQKQQQ  134 (259)
Q Consensus        62 p~l~k~~WT~eED~~Ll~~v~~~G~-~W~~Ia~~l-~gRT~~qcknrw~~~lkk~~~~~~~~k~e~~~l~~~~~q  134 (259)
                      +.+++++||+|||++|+++|.+||. +|..||+.+ ++||+.|||.||.++|++.+++++|+++|+.++.+.+..
T Consensus        10 qklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~   84 (459)
T PLN03091         10 QKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAV   84 (459)
T ss_pred             CCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHH
Confidence            5789999999999999999999995 699999988 599999999999999999999999999999888776644

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.28  E-value=5.4e-12  Score=113.26  Aligned_cols=72  Identities=13%  Similarity=0.190  Sum_probs=66.3

Q ss_pred             CCcCCCCCHHhHHHHHHHHHHcCCC-HHHHHhhCC-CCCHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHH
Q 047854           63 GLKRGQLTPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTHFKKEKSSQKQEKRKALLLKQKQQQ  134 (259)
Q Consensus        63 ~l~k~~WT~eED~~Ll~~v~~~G~~-W~~Ia~~l~-gRT~~qcknrw~~~lkk~~~~~~~~k~e~~~l~~~~~q  134 (259)
                      .+.+|+||+|||.+|+++|++||.. |..|++.++ +|+.++||-||.++|++..+++.|+.+|+.++.+.+..
T Consensus         6 ~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~   79 (238)
T KOG0048|consen    6 ELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHAL   79 (238)
T ss_pred             cccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHH
Confidence            4457999999999999999999955 999999998 99999999999999999999999999999888877755

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.23  E-value=2.4e-11  Score=80.69  Aligned_cols=47  Identities=38%  Similarity=0.816  Sum_probs=44.3

Q ss_pred             CCCCCHHhHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHhhh
Q 047854           66 RGQLTPQEEGIIIELHALWG-NKWSTIARYLPGRTDNEIKNYWRTHFK  112 (259)
Q Consensus        66 k~~WT~eED~~Ll~~v~~~G-~~W~~Ia~~l~gRT~~qcknrw~~~lk  112 (259)
                      +++||++||.+|+.++..|| .+|..||..|++||+.+|++||..+++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999 999999999999999999999998764

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.22  E-value=3.8e-11  Score=118.99  Aligned_cols=125  Identities=23%  Similarity=0.283  Sum_probs=106.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-----------------------CChhhhhhhcccCCCccccchhhhhhccCCC-cC
Q 047854           11 WRKGPWTPEEDKLLTEHVNLLGE-----------------------GRWSSVARSAGLNRSGKSCRLRWVNYLRPGL-KR   66 (259)
Q Consensus        11 ~rkg~WT~EED~~L~~lV~~~g~-----------------------~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l-~k   66 (259)
                      .+-+.||++||..|...|..|-.                       +-|..|...|| -|+...++..-++...|-- ++
T Consensus       306 ~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp-~R~~~siy~~~rR~y~~FE~~r  384 (607)
T KOG0051|consen  306 INLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLP-YRDRKSIYHHLRRAYTPFENKR  384 (607)
T ss_pred             hhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcC-cccchhHHHHHHhcCCcccccc
Confidence            34588999999999999988811                       13788888999 6999999885555555543 99


Q ss_pred             CCCCHHhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhhhcc--ccchhhhHHHHHHHHHHHHHHHH
Q 047854           67 GQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKE--KSSQKQEKRKALLLKQKQQQQKQ  137 (259)
Q Consensus        67 ~~WT~eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~lkk~--~~~~~~~k~e~~~l~~~~~q~~~  137 (259)
                      |.||++|++.|..++.++|+.|..|++.+ ||.+..|++||+.+++..  ..+++|+.++...+.+.+.....
T Consensus       385 g~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~  456 (607)
T KOG0051|consen  385 GKWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIR  456 (607)
T ss_pred             CCCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999 999999999999999986  47899999999999998875444

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.15  E-value=3.5e-11  Score=118.00  Aligned_cols=134  Identities=27%  Similarity=0.482  Sum_probs=116.4

Q ss_pred             CCCccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCCCc---------------
Q 047854            1 MGWGATTEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLK---------------   65 (259)
Q Consensus         1 ~rW~~~l~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l~---------------   65 (259)
                      +||.++++|.++++.||.|||+.|+.+-..+|. .|..||..++ +||..+|.+||.+.+.+...               
T Consensus        60 ~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~-~wstia~~~d-~rt~~~~~ery~~~~~~~~s~~~s~~~~~~~f~k~  137 (512)
T COG5147          60 NRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGT-QWSTIADYKD-RRTAQQCVERYVNTLEDLSSTHDSKLQRRNEFDKI  137 (512)
T ss_pred             chhhhhhchhcccccccHHHHHHHHHHHHhcCc-hhhhhccccC-ccchHHHHHHHHHHhhhhhccccccccchhhcccc
Confidence            589999999999999999999999999999999 7999999998 99999999999955322100               


Q ss_pred             --------------------------------------------------------------------------------
Q 047854           66 --------------------------------------------------------------------------------   65 (259)
Q Consensus        66 --------------------------------------------------------------------------------   65 (259)
                                                                                                      
T Consensus       138 d~f~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~rv~~~~vk~~~~~~~~~~~~~~~qem~~~~~~s~~~~~~~~~~~~~  217 (512)
T COG5147         138 DPFNENSARRPDIYEDELLEREVNREASYRLRVPRVSKADVKPREKGEENNPDIEDLQEMKELKSASITRHLILPSKSEI  217 (512)
T ss_pred             CchhhhhhhhhhhhhcccchhhhhHHHHHHHHcccchHhhhhHHhhcccccccHHHHHHHhHHHHHHHHHHHhhhhhhhh
Confidence                                                                                            


Q ss_pred             -------------------------------------------------------------------------CCCCCHH
Q 047854           66 -------------------------------------------------------------------------RGQLTPQ   72 (259)
Q Consensus        66 -------------------------------------------------------------------------k~~WT~e   72 (259)
                                                                                               ++.||.+
T Consensus       218 ~k~f~~~~~~~~e~~i~~~~~~~~~sr~q~~~~Iws~~~~~~~f~~n~~~~l~~R~~ksiy~~~rrky~~f~~~~~wt~e  297 (512)
T COG5147         218 NKAFKKGETLALEQEINEYKEKKGLSRKQFCERIWSTDRDEDKFWPNIYKKLPYRDKKSIYKHLRRKYNIFEQRGKWTKE  297 (512)
T ss_pred             ccccchhHHHHHHHHHHHHHHHhcccHHHHHhhccccccccccccchhhcccccccccchHHHHHHhhhHHhhhccCccc
Confidence                                                                                     4569999


Q ss_pred             hHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhhhc--cccchhhhHHHHHHHHHHHHHHHH
Q 047854           73 EEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKK--EKSSQKQEKRKALLLKQKQQQQKQ  137 (259)
Q Consensus        73 ED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~lkk--~~~~~~~~k~e~~~l~~~~~q~~~  137 (259)
                      |+..|...+.++|..|..|.+.+ +|-++.|++||+.+++.  .....+|+.++..++.+.+..+..
T Consensus       298 ~~~eL~~~~~~~~~~w~~ig~~~-~rmp~~crd~wr~~~~~g~t~~~~~ws~eee~~l~~vv~e~~~  363 (512)
T COG5147         298 EEQELAKLVVEHGGSWTEIGKLL-GRMPNDCRDRWRDYVKCGDTLKRNRWSIEEEELLDKVVNEMRL  363 (512)
T ss_pred             cccccccccccccchhhHhhhhh-ccCcHHHHHHHhhhccccCccCCCCCchhhhhhHHHHHHHHHH
Confidence            99999999999999999999999 99999999999999998  556678998888777766654443

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.15  E-value=3.6e-11  Score=79.88  Aligned_cols=48  Identities=44%  Similarity=0.885  Sum_probs=44.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhcc
Q 047854           13 KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLR   61 (259)
Q Consensus        13 kg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~   61 (259)
                      +++||++||.+|+.++..||..+|..||..|+ +||+.+|+.||.+++.
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~-~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC-CCCHHHHHHHHHHHcC
Confidence            47899999999999999999559999999999 9999999999998764

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.09  E-value=2.4e-10  Score=74.83  Aligned_cols=44  Identities=34%  Similarity=0.744  Sum_probs=41.6

Q ss_pred             CCCHHhHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHhh
Q 047854           68 QLTPQEEGIIIELHALWG-NKWSTIARYLPGRTDNEIKNYWRTHF  111 (259)
Q Consensus        68 ~WT~eED~~Ll~~v~~~G-~~W~~Ia~~l~gRT~~qcknrw~~~l  111 (259)
                      +||++||..|+.++.+|| .+|..||+.+++||..+|++||..++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence            599999999999999999 89999999999999999999997753

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.00  E-value=3.4e-10  Score=74.07  Aligned_cols=44  Identities=45%  Similarity=0.906  Sum_probs=41.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhh
Q 047854           15 PWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNY   59 (259)
Q Consensus        15 ~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~   59 (259)
                      +||++||..|+.++..||..+|..||..++ +||+.+|+.||.++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~-~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcC-CCCHHHHHHHHHHh
Confidence            599999999999999999559999999998 89999999999865

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.99  E-value=1.9e-05  Score=56.24  Aligned_cols=48  Identities=15%  Similarity=0.180  Sum_probs=42.0

Q ss_pred             CCCCCHHhHHHHHHHHHHcCC-CH---HHHHhhCC-CC-CHHHHHHHHHHhhhc
Q 047854           66 RGQLTPQEEGIIIELHALWGN-KW---STIARYLP-GR-TDNEIKNYWRTHFKK  113 (259)
Q Consensus        66 k~~WT~eED~~Ll~~v~~~G~-~W---~~Ia~~l~-gR-T~~qcknrw~~~lkk  113 (259)
                      +-.||+||..++++++..+|. +|   ..|++.+. .| |..||++|+..+..+
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k   56 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK   56 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            457999999999999999997 89   99999884 46 999999999887643

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=97.93  E-value=1e-05  Score=79.25  Aligned_cols=74  Identities=18%  Similarity=0.310  Sum_probs=66.1

Q ss_pred             CcCCCCCHHhHHHHHHHHHHcCCC-HHHHHhhCCCCCHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHH
Q 047854           64 LKRGQLTPQEEGIIIELHALWGNK-WSTIARYLPGRTDNEIKNYWRTHFKKEKSSQKQEKRKALLLKQKQQQQKQ  137 (259)
Q Consensus        64 l~k~~WT~eED~~Ll~~v~~~G~~-W~~Ia~~l~gRT~~qcknrw~~~lkk~~~~~~~~k~e~~~l~~~~~q~~~  137 (259)
                      ++.+-|+..||+.|--++.+||.+ |+.|+..++-+|+.||++||...+.+.+++-.|+.+++..+.........
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~   79 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPT   79 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCC
Confidence            466889999999999999999965 99999999999999999999999999999889999999888777665443

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.83  E-value=2.1e-05  Score=56.02  Aligned_cols=48  Identities=15%  Similarity=0.283  Sum_probs=42.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCh---hhhhhhcccCC-Cccccchhhhhhc
Q 047854           13 KGPWTPEEDKLLTEHVNLLGEGRW---SSVARSAGLNR-SGKSCRLRWVNYL   60 (259)
Q Consensus        13 kg~WT~EED~~L~~lV~~~g~~~W---~~IA~~l~~gR-t~~Qcr~Rw~~~L   60 (259)
                      +-.||+||..+++++|..+|.++|   ..|++.|...| |..||+.++..|.
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            457999999999999999999899   99999887556 9999999987664

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.69  E-value=2.7e-05  Score=75.01  Aligned_cols=49  Identities=24%  Similarity=0.594  Sum_probs=45.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhc
Q 047854           11 WRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYL   60 (259)
Q Consensus        11 ~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L   60 (259)
                      +-...||.+|+-+|++++..||-+||..||.+++ .||..+|+++|.+++
T Consensus        70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIG-tKtkeeck~hy~k~f  118 (438)
T KOG0457|consen   70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIG-TKTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHc-ccchHHHHHHHHHHH
Confidence            3456699999999999999999999999999999 999999999999865

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.58  E-value=0.00011  Score=70.91  Aligned_cols=50  Identities=26%  Similarity=0.460  Sum_probs=45.8

Q ss_pred             CcCCCCCHHhHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHhhhc
Q 047854           64 LKRGQLTPQEEGIIIELHALWG-NKWSTIARYLPGRTDNEIKNYWRTHFKK  113 (259)
Q Consensus        64 l~k~~WT~eED~~Ll~~v~~~G-~~W~~Ia~~l~gRT~~qcknrw~~~lkk  113 (259)
                      +-...||.+|+.+||+++..|| ++|..||.++..||..+|+.+|.+++-.
T Consensus        70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv~  120 (438)
T KOG0457|consen   70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFVN  120 (438)
T ss_pred             CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHhc
Confidence            4456799999999999999999 8899999999999999999999888764

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=97.50  E-value=0.00035  Score=61.55  Aligned_cols=96  Identities=21%  Similarity=0.380  Sum_probs=71.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChhhhhhhcc--cCCCccccchhhhhhc-cCCC--------------------cCCCCCH
Q 047854           15 PWTPEEDKLLTEHVNLLGEGRWSSVARSAG--LNRSGKSCRLRWVNYL-RPGL--------------------KRGQLTP   71 (259)
Q Consensus        15 ~WT~EED~~L~~lV~~~g~~~W~~IA~~l~--~gRt~~Qcr~Rw~~~L-~p~l--------------------~k~~WT~   71 (259)
                      +|++++|-+|+.+|..-.  +-..|+..+.  +.-|...+.+||+..| +|.+                    .+.+||.
T Consensus         1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~   78 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK   78 (199)
T ss_pred             CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence            599999999999998766  4777766443  3457788889999776 4422                    3568999


Q ss_pred             HhHHHHHHHHHHcCC---CHHHHHh----hC-CCCCHHHHHHHHHHhhh
Q 047854           72 QEEGIIIELHALWGN---KWSTIAR----YL-PGRTDNEIKNYWRTHFK  112 (259)
Q Consensus        72 eED~~Ll~~v~~~G~---~W~~Ia~----~l-~gRT~~qcknrw~~~lk  112 (259)
                      +|++.|.........   .+.+|-.    .| ++||+.++.++|+.+.+
T Consensus        79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkq  127 (199)
T PF13325_consen   79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQ  127 (199)
T ss_pred             HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHH
Confidence            999999987765543   3777722    34 78999999999986544

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=97.17  E-value=0.00023  Score=69.24  Aligned_cols=46  Identities=30%  Similarity=0.714  Sum_probs=43.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhh
Q 047854           12 RKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNY   59 (259)
Q Consensus        12 rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~   59 (259)
                      +...||.+|..+|++.|..||. +|.+||++++ +||..||-.||.+.
T Consensus       278 ~dk~WS~qE~~LLLEGIe~ygD-dW~kVA~HVg-tKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYGD-DWDKVARHVG-TKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhhh-hHHHHHHHhC-CCCHHHHHHHHHcC
Confidence            5678999999999999999999 8999999999 99999999999854

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=97.02  E-value=0.00094  Score=66.26  Aligned_cols=47  Identities=17%  Similarity=0.310  Sum_probs=43.5

Q ss_pred             cCCCCCHHhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhh
Q 047854           65 KRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHF  111 (259)
Q Consensus        65 ~k~~WT~eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~l  111 (259)
                      -+..||++|..+|++++..||-.|.+||.+..+||..+|-.+|..+=
T Consensus       252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~LP  298 (506)
T KOG1279|consen  252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRLP  298 (506)
T ss_pred             CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhcC
Confidence            35689999999999999999999999999999999999999997663

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=96.95  E-value=0.00087  Score=57.04  Aligned_cols=49  Identities=20%  Similarity=0.350  Sum_probs=43.5

Q ss_pred             cCCCCCHHhHHHHHHHHHHc---CCC----HHHHHhhCCCCCHHHHHHHHHHhhhcc
Q 047854           65 KRGQLTPQEEGIIIELHALW---GNK----WSTIARYLPGRTDNEIKNYWRTHFKKE  114 (259)
Q Consensus        65 ~k~~WT~eED~~Ll~~v~~~---G~~----W~~Ia~~l~gRT~~qcknrw~~~lkk~  114 (259)
                      +...||.|||.+|.+.|..|   |+.    ...++..| +||+.+|.=||++.+++.
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkq   58 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQ   58 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHH
Confidence            46789999999999999988   332    89999999 999999999999999974

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.92  E-value=0.00063  Score=67.49  Aligned_cols=48  Identities=29%  Similarity=0.658  Sum_probs=43.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhh
Q 047854           10 GWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNY   59 (259)
Q Consensus        10 ~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~   59 (259)
                      .--++.||.+|..+|+++|..||. +|.+||.+++ +||..||-.++.+.
T Consensus       250 ~~~~~~WT~qE~lLLLE~ie~y~d-dW~kVa~hVg-~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  250 ESARPNWTEQETLLLLEAIEMYGD-DWNKVADHVG-TKSQEQCILKFLRL  297 (506)
T ss_pred             ccCCCCccHHHHHHHHHHHHHhcc-cHHHHHhccC-CCCHHHHHHHHHhc
Confidence            345678999999999999999999 8999999999 99999999998753

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.83  E-value=0.0014  Score=64.00  Aligned_cols=45  Identities=18%  Similarity=0.307  Sum_probs=42.3

Q ss_pred             CCCCCHHhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHh
Q 047854           66 RGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTH  110 (259)
Q Consensus        66 k~~WT~eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~  110 (259)
                      ...||.+|..+|++.+..||-.|.+||+++.+||..||--||.++
T Consensus       279 dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         279 DKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             cccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence            448999999999999999999999999999999999999999665

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.78  E-value=0.00085  Score=49.04  Aligned_cols=52  Identities=23%  Similarity=0.321  Sum_probs=33.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC--------CChhhhhhhcccCCCccccchhhhhhccCCC
Q 047854           13 KGPWTPEEDKLLTEHVNLLGE--------GRWSSVARSAGLNRSGKSCRLRWVNYLRPGL   64 (259)
Q Consensus        13 kg~WT~EED~~L~~lV~~~g~--------~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l   64 (259)
                      +.+||.+||..|+..|..+..        .-|..+++.-++.+|-.+-|+||.+.|.+..
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            468999999999999976522        2399999887757888888999999887643

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.70  E-value=0.0029  Score=46.22  Aligned_cols=50  Identities=16%  Similarity=0.344  Sum_probs=32.7

Q ss_pred             CCCCCHHhHHHHHHHHHHcC--------CC-HHHHHhhCC-CCCHHHHHHHHHHhhhccc
Q 047854           66 RGQLTPQEEGIIIELHALWG--------NK-WSTIARYLP-GRTDNEIKNYWRTHFKKEK  115 (259)
Q Consensus        66 k~~WT~eED~~Ll~~v~~~G--------~~-W~~Ia~~l~-gRT~~qcknrw~~~lkk~~  115 (259)
                      +.+||.+||..|+..|+++.        ++ |.++++.-+ .+|-...|+||.+.++...
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            45899999999999997652        12 999999877 8999999999998887643

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=96.70  E-value=0.0011  Score=56.55  Aligned_cols=50  Identities=38%  Similarity=0.658  Sum_probs=42.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC------CChhhhhhhcccCCCccccchhhhhhccC
Q 047854           11 WRKGPWTPEEDKLLTEHVNLLGE------GRWSSVARSAGLNRSGKSCRLRWVNYLRP   62 (259)
Q Consensus        11 ~rkg~WT~EED~~L~~lV~~~g~------~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p   62 (259)
                      .|...||.|||.+|.+.|-+|-.      ..+..|+..|  +||+.-|.-||+.++..
T Consensus         2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L--~RTsAACGFRWNs~VRk   57 (161)
T TIGR02894         2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL--NRTAAACGFRWNAYVRK   57 (161)
T ss_pred             ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH--cccHHHhcchHHHHHHH
Confidence            46778999999999999999832      2589999998  59999999999988864

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.67  E-value=0.0013  Score=49.50  Aligned_cols=47  Identities=32%  Similarity=0.505  Sum_probs=34.5

Q ss_pred             CCCCHHhHHHHHHHHHH------cC--C------CHHHHHhhC----CCCCHHHHHHHHHHhhhc
Q 047854           67 GQLTPQEEGIIIELHAL------WG--N------KWSTIARYL----PGRTDNEIKNYWRTHFKK  113 (259)
Q Consensus        67 ~~WT~eED~~Ll~~v~~------~G--~------~W~~Ia~~l----~gRT~~qcknrw~~~lkk  113 (259)
                      ..||.+|...||.++.+      ++  +      -|..||..|    ..||+.||+++|.++.+.
T Consensus         2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~   66 (90)
T PF13837_consen    2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKK   66 (90)
T ss_dssp             -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence            47999999999999887      21  1      299999876    369999999999998775

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.32  E-value=0.0023  Score=48.09  Aligned_cols=47  Identities=36%  Similarity=0.714  Sum_probs=32.6

Q ss_pred             CCCCCHHHHHHHHHHHHH--h----C---C----CChhhhhhhc---ccCCCccccchhhhhh
Q 047854           13 KGPWTPEEDKLLTEHVNL--L----G---E----GRWSSVARSA---GLNRSGKSCRLRWVNY   59 (259)
Q Consensus        13 kg~WT~EED~~L~~lV~~--~----g---~----~~W~~IA~~l---~~gRt~~Qcr~Rw~~~   59 (259)
                      +.+||.+|...|+.++..  +    +   .    .-|..||..|   +..||+.||+.+|.+.
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L   63 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNL   63 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            357999999999999877  2    1   1    1499999976   4579999999999874

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=95.76  E-value=0.041  Score=59.14  Aligned_cols=100  Identities=12%  Similarity=0.240  Sum_probs=77.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccch-------hhhh---------h------------------
Q 047854           14 GPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRL-------RWVN---------Y------------------   59 (259)
Q Consensus        14 g~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~-------Rw~~---------~------------------   59 (259)
                      +.||..+=..++.+..+||..+-..||..|. ++|...++.       ||..         .                  
T Consensus       825 ~~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~-~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~  903 (1033)
T PLN03142        825 STWSRRDFNAFIRACEKYGRNDIKSIASEME-GKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAI  903 (1033)
T ss_pred             CcccHHHHHHHHHHHHHhCHhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3588888888899999999999999999998 899876653       1111         0                  


Q ss_pred             ---------------c-cCCCcCCCCCHHhHHHHHHHHHHcC-CCHHHHHh------------hCCCCCHHHHHHHHHHh
Q 047854           60 ---------------L-RPGLKRGQLTPQEEGIIIELHALWG-NKWSTIAR------------YLPGRTDNEIKNYWRTH  110 (259)
Q Consensus        60 ---------------L-~p~l~k~~WT~eED~~Ll~~v~~~G-~~W~~Ia~------------~l~gRT~~qcknrw~~~  110 (259)
                                     + .+..++..+|++||+.|+-++.+|| .+|..|-.            +|..||+..|..|...+
T Consensus       904 ~~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l  983 (1033)
T PLN03142        904 GKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTL  983 (1033)
T ss_pred             HHHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHH
Confidence                           0 1223455699999999999999999 66999833            23479999999999888


Q ss_pred             hhcc
Q 047854          111 FKKE  114 (259)
Q Consensus       111 lkk~  114 (259)
                      ++-.
T Consensus       984 ~~~~  987 (1033)
T PLN03142        984 IRLI  987 (1033)
T ss_pred             HHHH
Confidence            8753

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=95.67  E-value=0.011  Score=51.00  Aligned_cols=49  Identities=16%  Similarity=0.321  Sum_probs=42.5

Q ss_pred             cCCCCCHHhHHHHHHHHHHcCCC-------HHHHHhhCCCCCHHHHHHHHHHhhhcc
Q 047854           65 KRGQLTPQEEGIIIELHALWGNK-------WSTIARYLPGRTDNEIKNYWRTHFKKE  114 (259)
Q Consensus        65 ~k~~WT~eED~~Ll~~v~~~G~~-------W~~Ia~~l~gRT~~qcknrw~~~lkk~  114 (259)
                      ++..||.|||.+|.+.|..|+..       ...++..| +||..+|..||++.+++.
T Consensus         4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~   59 (170)
T PRK13923          4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQ   59 (170)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHH
Confidence            56789999999999999988743       77778888 999999999999998864

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=95.65  E-value=0.0071  Score=44.66  Aligned_cols=49  Identities=29%  Similarity=0.438  Sum_probs=39.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC----------------CChhhhhhhc----ccCCCccccchhhhhhc
Q 047854           12 RKGPWTPEEDKLLTEHVNLLGE----------------GRWSSVARSA----GLNRSGKSCRLRWVNYL   60 (259)
Q Consensus        12 rkg~WT~EED~~L~~lV~~~g~----------------~~W~~IA~~l----~~gRt~~Qcr~Rw~~~L   60 (259)
                      |+..||++|...|+++|..|..                ..|..|+..|    +..||..||+.+|.++.
T Consensus         1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk   69 (78)
T PF13873_consen    1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK   69 (78)
T ss_pred             CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            4678999999999999998821                1599999876    22699999999998754

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=95.59  E-value=0.0051  Score=52.96  Aligned_cols=49  Identities=31%  Similarity=0.541  Sum_probs=40.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCC------ChhhhhhhcccCCCccccchhhhhhcc
Q 047854           11 WRKGPWTPEEDKLLTEHVNLLGEG------RWSSVARSAGLNRSGKSCRLRWVNYLR   61 (259)
Q Consensus        11 ~rkg~WT~EED~~L~~lV~~~g~~------~W~~IA~~l~~gRt~~Qcr~Rw~~~L~   61 (259)
                      .|+..||.|||.+|.+.|..|+..      ....++..|  +||+..|..||+.++.
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L--~rt~aac~fRwNs~vr   57 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL--KRTAAACGFRWNSVVR   57 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH--hhhHHHHHhHHHHHHH
Confidence            577889999999999999988653      367777777  5999999999987765

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.58  E-value=0.0072  Score=56.73  Aligned_cols=46  Identities=26%  Similarity=0.603  Sum_probs=43.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhcc
Q 047854           15 PWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLR   61 (259)
Q Consensus        15 ~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~   61 (259)
                      -|+..|+.+|++.....|.++|..||..++ .|+...|+++|..++.
T Consensus        65 ~WgadEEllli~~~~TlGlGNW~dIadyiG-sr~kee~k~HylK~y~  110 (432)
T COG5114          65 GWGADEELLLIECLDTLGLGNWEDIADYIG-SRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CcCchHHHHHHHHHHhcCCCcHHHHHHHHh-hhhhHHHHHHHHHHHh
Confidence            399999999999999999999999999999 9999999999998775

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.38  E-value=0.019  Score=54.03  Aligned_cols=46  Identities=28%  Similarity=0.494  Sum_probs=42.7

Q ss_pred             CCCCHHhHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHhhh
Q 047854           67 GQLTPQEEGIIIELHALWG-NKWSTIARYLPGRTDNEIKNYWRTHFK  112 (259)
Q Consensus        67 ~~WT~eED~~Ll~~v~~~G-~~W~~Ia~~l~gRT~~qcknrw~~~lk  112 (259)
                      ..|+..|+.+|++.+.-.| ++|..||.++..|+...||++|.++..
T Consensus        64 e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          64 EGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            4699999999999999999 789999999999999999999988766

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=94.32  E-value=0.058  Score=39.72  Aligned_cols=48  Identities=27%  Similarity=0.479  Sum_probs=39.4

Q ss_pred             CCCCCHHhHHHHHHHHHHcC----C-------------CHHHHHhhC-----CCCCHHHHHHHHHHhhhc
Q 047854           66 RGQLTPQEEGIIIELHALWG----N-------------KWSTIARYL-----PGRTDNEIKNYWRTHFKK  113 (259)
Q Consensus        66 k~~WT~eED~~Ll~~v~~~G----~-------------~W~~Ia~~l-----~gRT~~qcknrw~~~lkk  113 (259)
                      ...||.+|...|++++.+|.    +             -|..|+..|     +.||..+|+.+|..+...
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~   71 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSK   71 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence            45799999999999999872    1             199998866     359999999999888654

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=94.08  E-value=0.26  Score=47.47  Aligned_cols=47  Identities=21%  Similarity=0.364  Sum_probs=43.5

Q ss_pred             CCCCHHhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhhhc
Q 047854           67 GQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKK  113 (259)
Q Consensus        67 ~~WT~eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~lkk  113 (259)
                      .+||.+|-.++..+...+|..++.||..||.|...|||.+|.+--++
T Consensus       366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~  412 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKV  412 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhh
Confidence            37999999999999999999999999999999999999999776554

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=93.26  E-value=0.14  Score=41.72  Aligned_cols=51  Identities=20%  Similarity=0.350  Sum_probs=39.7

Q ss_pred             CCcCCCCCHHhHHHHHHHHHHcCC----CHHHHHhh------------CCCCCHHHHHHHHHHhhhc
Q 047854           63 GLKRGQLTPQEEGIIIELHALWGN----KWSTIARY------------LPGRTDNEIKNYWRTHFKK  113 (259)
Q Consensus        63 ~l~k~~WT~eED~~Ll~~v~~~G~----~W~~Ia~~------------l~gRT~~qcknrw~~~lkk  113 (259)
                      ..++..||++||.-|+-++.+||-    .|..|-..            |..||+..+..|-..+++-
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~  112 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKL  112 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHH
Confidence            556789999999999999999997    59888552            2369999999999888764

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=91.07  E-value=0.19  Score=40.91  Aligned_cols=50  Identities=20%  Similarity=0.340  Sum_probs=37.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC---CChhhhhhhcc-----------cCCCccccchhhhh
Q 047854            9 QGWRKGPWTPEEDKLLTEHVNLLGE---GRWSSVARSAG-----------LNRSGKSCRLRWVN   58 (259)
Q Consensus         9 p~~rkg~WT~EED~~L~~lV~~~g~---~~W~~IA~~l~-----------~gRt~~Qcr~Rw~~   58 (259)
                      |+.++..||.+||.-|+-++.+||-   +.|..|-..+.           ..||+..+..|...
T Consensus        45 ~~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~t  108 (118)
T PF09111_consen   45 PNNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNT  108 (118)
T ss_dssp             STSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHH
T ss_pred             CCCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHH
Confidence            3777888999999999999999999   88999987652           15666666666543

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=90.15  E-value=0.37  Score=45.32  Aligned_cols=48  Identities=23%  Similarity=0.303  Sum_probs=39.5

Q ss_pred             CCCCCHHhHHHHHHHHHHc----------CCCHHHHHhhC----CCCCHHHHHHHHHHhhhc
Q 047854           66 RGQLTPQEEGIIIELHALW----------GNKWSTIARYL----PGRTDNEIKNYWRTHFKK  113 (259)
Q Consensus        66 k~~WT~eED~~Ll~~v~~~----------G~~W~~Ia~~l----~gRT~~qcknrw~~~lkk  113 (259)
                      ...|+.+|-..||++..+.          +.-|..||+.+    .-||+.+|+.+|.++.++
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~  115 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKK  115 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence            3689999999999988753          23499999954    349999999999998876

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=90.06  E-value=0.5  Score=35.72  Aligned_cols=45  Identities=31%  Similarity=0.539  Sum_probs=33.9

Q ss_pred             CCCHHhHHHHHHHHHHc---CC----------CHHHHHhhCC-----CCCHHHHHHHHHHhhh
Q 047854           68 QLTPQEEGIIIELHALW---GN----------KWSTIARYLP-----GRTDNEIKNYWRTHFK  112 (259)
Q Consensus        68 ~WT~eED~~Ll~~v~~~---G~----------~W~~Ia~~l~-----gRT~~qcknrw~~~lk  112 (259)
                      .||+++++.|++++.+.   |+          .|..|+..|.     ..|..||++||..+-+
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~   63 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK   63 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence            49999999999998654   21          1999988662     3578899999866544

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=89.33  E-value=0.31  Score=46.96  Aligned_cols=43  Identities=16%  Similarity=0.349  Sum_probs=40.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhh
Q 047854           14 GPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVN   58 (259)
Q Consensus        14 g~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~   58 (259)
                      -+||.+|-+++.+++..+|+ ++..||.++| +|..+|++.+|.+
T Consensus       366 ~~Ws~~e~ekFYKALs~wGt-dF~LIs~lfP-~R~RkqIKaKfi~  408 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGT-DFSLISSLFP-NRERKQIKAKFIK  408 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcc-hHHHHHHhcC-chhHHHHHHHHHH
Confidence            46999999999999999999 8999999999 9999999999875

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=88.12  E-value=0.33  Score=46.87  Aligned_cols=48  Identities=17%  Similarity=0.268  Sum_probs=41.8

Q ss_pred             CCCCCHHhHHHHHHHHHHcCCCHHHHHhh-----CCC-CCHHHHHHHHHHhhhc
Q 047854           66 RGQLTPQEEGIIIELHALWGNKWSTIARY-----LPG-RTDNEIKNYWRTHFKK  113 (259)
Q Consensus        66 k~~WT~eED~~Ll~~v~~~G~~W~~Ia~~-----l~g-RT~~qcknrw~~~lkk  113 (259)
                      -..||.+|-..|.++++.|.-+|..|+..     ++. ||-..+|.||....++
T Consensus       130 dn~WskeETD~LF~lck~fDLRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~  183 (445)
T KOG2656|consen  130 DNSWSKEETDYLFDLCKRFDLRFFVIADRYDNQQYKKSRTVEDLKERYYSVCRK  183 (445)
T ss_pred             cccccHHHHHHHHHHHHhcCeeEEEEeeccchhhccccccHHHHHHHHHHHHHH
Confidence            35699999999999999999999999775     655 9999999999776654

>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=87.67  E-value=1.5  Score=29.71  Aligned_cols=41  Identities=27%  Similarity=0.394  Sum_probs=31.1

Q ss_pred             HHhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhhh
Q 047854           71 PQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFK  112 (259)
Q Consensus        71 ~eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~lk  112 (259)
                      ++++..++.++...|-.+.+||..+ |.|...|+.+.....+
T Consensus        12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~   52 (54)
T PF08281_consen   12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARK   52 (54)
T ss_dssp             -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHh
Confidence            4677888999999999999999999 9999999998766543

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=85.01  E-value=3.8  Score=40.50  Aligned_cols=49  Identities=16%  Similarity=0.301  Sum_probs=43.6

Q ss_pred             cCCCCCHHhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhhhc
Q 047854           65 KRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKK  113 (259)
Q Consensus        65 ~k~~WT~eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~lkk  113 (259)
                      -...||.||-.++-.+...||++..+|-+.||.||-..+..+|...-+.
T Consensus       186 ~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~  234 (534)
T KOG1194|consen  186 FPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKT  234 (534)
T ss_pred             CcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHH
Confidence            3567999999999999999999999999999999999999988666544

>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]

Probab=84.85  E-value=0.68  Score=47.99  Aligned_cols=44  Identities=18%  Similarity=0.360  Sum_probs=40.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhh
Q 047854           13 KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVN   58 (259)
Q Consensus        13 kg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~   58 (259)
                      ...||+.|-.++.+++..|.+ ++..|+++++ ++|..||-+-|+.
T Consensus       619 Sd~WTp~E~~lF~kA~y~~~K-DF~~v~km~~-~KtVaqCVeyYYt  662 (907)
T KOG4167|consen  619 SDKWTPLERKLFNKALYTYSK-DFIFVQKMVK-SKTVAQCVEYYYT  662 (907)
T ss_pred             cccccHHHHHHHHHHHHHhcc-cHHHHHHHhc-cccHHHHHHHHHH
Confidence            356999999999999999999 8999999999 9999999987763

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=81.37  E-value=1.3  Score=41.59  Aligned_cols=47  Identities=32%  Similarity=0.474  Sum_probs=36.7

Q ss_pred             CCCCHHHHHHHHHHHHHh----C-----CCChhhhhhhc---ccCCCccccchhhhhhc
Q 047854           14 GPWTPEEDKLLTEHVNLL----G-----EGRWSSVARSA---GLNRSGKSCRLRWVNYL   60 (259)
Q Consensus        14 g~WT~EED~~L~~lV~~~----g-----~~~W~~IA~~l---~~gRt~~Qcr~Rw~~~L   60 (259)
                      ..|+.+|-..|+.+....    .     ...|..||+.+   +.-||+.||+.+|.++.
T Consensus        55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~  113 (345)
T KOG4282|consen   55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLK  113 (345)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            679999999999887643    1     12599999843   45699999999998743

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	259
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		2e-21
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		6e-20
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		2e-19
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		2e-19
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		2e-19
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		2e-16
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		7e-14
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		3e-11
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		8e-07
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		2e-06
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		6e-06
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		8e-06
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		2e-05

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/95 (49%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 13  KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQ 72
           KGPWT EED+ + EHV   G  RWS +A+     R GK CR RW N+L P +K+   T +
Sbjct: 27  KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEE 85
Query: 73  EEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYW 107
           E+ II + H   GN+W+ IA+ LPGRTDN +KN+W
Sbjct: 86  EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHW 120

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score = 94.4 bits (233), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 45/95 (47%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 13  KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQ 72
           KGPWT EED+ + E V   G  +W+ +A+     R GK CR RW N+L P +K+   T +
Sbjct: 7   KGPWTKEEDQKVIELVKKYGTKQWTLIAKHLK-GRLGKQCRERWHNHLNPEVKKSSWTEE 65
Query: 73  EEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYW 107
           E+ II E H + GN+W+ IA+ LPGRTDN +KN+W
Sbjct: 66  EDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHW 100

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/95 (48%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 13  KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQ 72
           KGPWT EED+ + + V   G  RWS +A+     R GK CR RW N+L P +K+   T +
Sbjct: 58  KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEE 116
Query: 73  EEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYW 107
           E+ II + H   GN+W+ IA+ LPGRTDN IKN+W
Sbjct: 117 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW 151

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/95 (48%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 13  KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQ 72
           KGPWT EED+ + + V   G  RWS +A+     R GK CR RW N+L P +K+   T +
Sbjct: 4   KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 73  EEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYW 107
           E+ II + H   GN+W+ IA+ LPGRTDN IKN+W
Sbjct: 63  EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW 97

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/95 (48%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 13  KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQ 72
           KGPWT EED+ + + V   G  RWS +A+     R GK CR RW N+L P +K+   T +
Sbjct: 4   KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 73  EEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYW 107
           E+ II + H   GN+W+ IA+ LPGRTDN IKN+W
Sbjct: 63  EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW 97

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/95 (45%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Query: 13  KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQ 72
           KGP+T  ED L+ E+V   G   W  +  S   NRS K CR RW N+L P + +   TP+
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRIT-SFLPNRSPKQCRERWFNHLDPAVVKHAWTPE 60
Query: 73  EEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYW 107
           E+  I   +   G+KWS IA+ +PGRTDN IKN W
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRW 95

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 73.9 bits (180), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
Query: 12  RKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTP 71
           +K  +TPEED++L   V   G   W  +A +   NR+ + CR RW NYL P +     T 
Sbjct: 10  KKQKFTPEEDEMLKRAVAQHGSD-WKMIA-ATFPNRNARQCRDRWKNYLAPSISHTPWTA 67
Query: 72  QEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRT 109
           +E+ ++++    +G +W+ IA++ PGRTD  IKN W T
Sbjct: 68  EEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 13  KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQ 72
           K  +T EED  L + V   G   W  ++    + R+ + CR RW NY+ P L+    +P+
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRIS-QLMITRNPRQCRERWNNYINPALRTDPWSPE 59
Query: 73  EEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYW 107
           E+ ++ + +A +G KW+ I+++L  R+DN I+N W
Sbjct: 60  EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 31/44 (70%)
Query: 64  LKRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYW 107
           +K+   T +E+ II + H   GN+W+ IA+ LPGRTDN IKN+W
Sbjct: 1   VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW 44

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 31/44 (70%)
Query: 64  LKRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYW 107
           +K+   T +E+ I+ + H   GN+W+ IA+ LPGRTDN IKN+W
Sbjct: 3   VKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW 46

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/50 (50%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 13 KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRP 62
          KGPWT EED+ + E V   G  RWS +A+     R GK CR RW N+L P
Sbjct: 3  KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNP 51

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/50 (50%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 13 KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRP 62
          KGPWT EED+ L + V   G  RWS +A+     R GK CR RW N+L P
Sbjct: 3  KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNP 51

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 13 KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRP 62
          KGPWT EED+ + + V   G  RWS +A+     R GK CR RW N+L P
Sbjct: 3  KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNP 51

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	259
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	8e-59
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	3e-57
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	9e-57
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	1e-53
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	9e-53
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	4e-49
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	2e-29
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	3e-06
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	4e-23
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	2e-22
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	1e-04
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	2e-19
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	8e-06
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	4e-17
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	2e-10
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	2e-10
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	2e-10
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	2e-10
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	3e-10
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	8e-09
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	1e-08
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	2e-08
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	1e-04
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	3e-08
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	3e-08
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	4e-08
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	2e-07
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	7e-04
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	1e-06
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	2e-05
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	4e-05
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	2e-04
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	4e-04

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score =  182 bits (463), Expect = 8e-59
 Identities = 47/126 (37%), Positives = 66/126 (52%), Gaps = 1/126 (0%)

Query: 13  KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQ 72
           KGP+T  ED L+ E+V   G   W  +      NRS K CR RW N+L P + +   TP+
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPE 60

Query: 73  EEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEKSSQKQEKRKALLLKQKQ 132
           E+  I   +   G+KWS IA+ +PGRTDN IKN W +   K  S+    K   L  + K+
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLPDRSKK 120

Query: 133 QQQKQQ 138
           ++    
Sbjct: 121 RKAADV 126

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score =  177 bits (451), Expect = 3e-57
 Identities = 46/102 (45%), Positives = 64/102 (62%), Gaps = 1/102 (0%)

Query: 12  RKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTP 71
            KGPWT EED+ + + V   G  RWS +A+     R GK CR RW N+L P +K+   T 
Sbjct: 3   IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTE 61

Query: 72  QEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKK 113
           +E+ II + H   GN+W+ IA+ LPGRTDN IKN+W +  ++
Sbjct: 62  EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR 103

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score =  176 bits (449), Expect = 9e-57
 Identities = 48/111 (43%), Positives = 66/111 (59%), Gaps = 1/111 (0%)

Query: 3   WGATTEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRP 62
           W         KGPWT EED+ + EHV   G  RWS +A+     R GK CR RW N+L P
Sbjct: 17  WQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNP 75

Query: 63  GLKRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKK 113
            +K+   T +E+ II + H   GN+W+ IA+ LPGRTDN +KN+W +  ++
Sbjct: 76  EVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRR 126

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score =  168 bits (427), Expect = 1e-53
 Identities = 34/107 (31%), Positives = 58/107 (54%), Gaps = 1/107 (0%)

Query: 13  KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQ 72
           K  +T EED  L + V   G   W  +++     R+ + CR RW NY+ P L+    +P+
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPE 59

Query: 73  EEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEKSSQK 119
           E+ ++ + +A +G KW+ I+++L  R+DN I+N W    +     QK
Sbjct: 60  EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKHQK 106

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score =  166 bits (423), Expect = 9e-53
 Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 2/117 (1%)

Query: 6   TTEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLK 65
              +  +K  +TPEED++L   V   G   W  +A +   NR+ + CR RW NYL P + 
Sbjct: 4   VNLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSIS 61

Query: 66  RGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEKSSQKQEK 122
               T +E+ ++++    +G +W+ IA++ PGRTD  IKN W T   K    Q Q+ 
Sbjct: 62  HTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGIPQTQQM 118

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  158 bits (401), Expect = 4e-49
 Identities = 46/102 (45%), Positives = 64/102 (62%), Gaps = 1/102 (0%)

Query: 12  RKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTP 71
            KGPWT EED+ + + V   G  RWS +A+     R GK CR RW N+L P +K+   T 
Sbjct: 57  IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTE 115

Query: 72  QEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKK 113
           +E+ II + H   GN+W+ IA+ LPGRTDN IKN+W +  ++
Sbjct: 116 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR 157

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  107 bits (270), Expect = 2e-29
 Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 2/100 (2%)

Query: 12  RKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTP 71
            K  WT EED+ L + V   G   W  +A     NR+   C+ RW   L P L +G  T 
Sbjct: 5   GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTK 63

Query: 72  QEEGIIIELHALWGNK-WSTIARYLPGRTDNEIKNYWRTH 110
           +E+  +I+L   +G K WS IA++L GR   + +  W  H
Sbjct: 64  EEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 103

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score = 44.9 bits (107), Expect = 3e-06
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 12  RKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGL-NRSGKSCRLRWVNYLRPGL 64
           +K  WT EED+++ +    LG  RW+ +A+   L  R+  + +  W + +R  +
Sbjct: 109 KKTSWTEEEDRIIYQAHKRLG-NRWAEIAKL--LPGRTDNAIKNHWNSTMRRKV 159

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score = 88.0 bits (219), Expect = 4e-23
 Identities = 25/50 (50%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 13 KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRP 62
          KGPWT EED+ L + V   G  RWS +A+     R GK CR RW N+L P
Sbjct: 3  KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNP 51

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 86.6 bits (215), Expect = 2e-22
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 12 RKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTP 71
          + G W   ED++L   V   G+ +WS +A      +S K C+ RW  +L P +K+ + + 
Sbjct: 8  KGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSG 66

Query: 72 QEEG 75
             G
Sbjct: 67 PSSG 70

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 61  RPGLKRGQLTPQEEGIIIELHALWG-NKWSTIARYLPGRTDNEIKNYWRTH 110
               K G     E+ I+      +G N+WS IA  L  ++  + K  W   
Sbjct: 4   GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEW 54

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 78.4 bits (194), Expect = 2e-19
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 12 RKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRP 62
           K  WT EED+ L + V   G   W  +A     NR+   C+ RW   L P
Sbjct: 2  GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNP 51

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 41.4 bits (98), Expect = 8e-06
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 64  LKRGQLTPQEEGIIIELHALWG-NKWSTIARYLPGRTDNEIKNYWRTH 110
           L + + T +E+  + +L    G + W  IA YLP RTD + ++ W+  
Sbjct: 1   LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKV 48

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 72.3 bits (178), Expect = 4e-17
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 12 RKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRP 62
           K  WT EED+ L   V   G+  W  +A     NR+ + C+ RW+  L  
Sbjct: 7  GKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSG 56

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 56.3 bits (135), Expect = 2e-10
 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 9/87 (10%)

Query: 12  RKGPWTPEEDKLLTEHVNLLGEGRWSSVAR---SAGLNRSGKSCRLRWVNYLR-----PG 63
            + P+T  E +LL E V  LG GRW  V         +R+    + +W   +      P 
Sbjct: 30  IRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQ 89

Query: 64  LKRGQLTPQE-EGIIIELHALWGNKWS 89
            +RG   PQE    ++   A W    S
Sbjct: 90  QRRGAPVPQELLDRVLAAQAYWSVDSS 116

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 55.8 bits (134), Expect = 2e-10
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 9/91 (9%)

Query: 12  RKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAG---LNRSGKSCRLRWVNYLR-----PG 63
            + P++  E + L + V  LG GRW  V   A     +R+    + +W   +      P 
Sbjct: 12  IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQ 71

Query: 64  LKRGQLTPQEEGI-IIELHALWGNKWSTIAR 93
            +RG+  PQE    ++  H  W  +     +
Sbjct: 72  QRRGEPVPQELLNRVLNAHGYWTQQQMQQLQ 102

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 55.0 bits (132), Expect = 2e-10
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 9/82 (10%)

Query: 15 PWTPEEDKLLTEHVNLLGEGRWSSVARSA---GLNRSGKSCRLRWVNYLR-----PGLKR 66
          P++  E + L E V  LG GRW  V   A     +R+    + +W   +      P  +R
Sbjct: 2  PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 67 GQLTPQEEGI-IIELHALWGNK 87
          G+  PQ+    ++  HA W  +
Sbjct: 62 GEPVPQDLLDRVLAAHAYWSQQ 83

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 56.0 bits (134), Expect = 2e-10
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 9/87 (10%)

Query: 12  RKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAG---LNRSGKSCRLRWVNYLR-----PG 63
            + P++  E + L E V  LG GRW  V   A     +R+    + +W   +      P 
Sbjct: 16  IRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQ 75

Query: 64  LKRGQLTPQE-EGIIIELHALWGNKWS 89
            +RG+  PQ+    ++  HA W  +  
Sbjct: 76  QRRGEPVPQDLLDRVLAAHAYWSQQQG 102

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 53.5 bits (129), Expect = 3e-10
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 12 RKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGL-NRSGKSCRLRWVNYLR 61
          ++  W  EEDK L   V   GEG WS +       NR+    + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 49.6 bits (119), Expect = 8e-09
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 12 RKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGL-NRSGKSCRLRWVNYLRPGL 64
          +K  WT EE + +   V   GEG W++++++    NR+    + RW    R G+
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 49.7 bits (119), Expect = 1e-08
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 12 RKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGL-NRSGKSCRLRWVNYLRPGL 64
          +K  WT EE + +   V   GEG W++++++    NR+    + RW    R G+
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 49.0 bits (117), Expect = 2e-08
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 12 RKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKR 66
          +K  W+ EE++ L     L+   +W ++A   G  R+   C   +   L    +R
Sbjct: 8  KKTEWSREEEEKLLHLAKLMP-TQWRTIAPIIG--RTAAQCLEHYEFLLDKAAQR 59

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 38.3 bits (89), Expect = 1e-04
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 62  PGLKRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEKSSQKQE 121
              K+ + + +EE  ++ L  L   +W TIA  + GRT  +   ++     K        
Sbjct: 5   SSGKKTEWSREEEEKLLHLAKLMPTQWRTIAPII-GRTAAQCLEHYEFLLDKAAQRDSGP 63

Query: 122 K 122
            
Sbjct: 64  S 64

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 48.5 bits (116), Expect = 3e-08
 Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 12 RKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPG 63
              WT +E+  L E V   G G W  VA      ++ + C   ++ Y    
Sbjct: 7  GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGP 57

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 48.6 bits (116), Expect = 3e-08
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 12 RKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGL-NRSGKSCRLRWVNYLRPGL 64
          ++  W  EEDK L   V   GEG WS +       NR+    + RW    +  L
Sbjct: 9  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKL 62

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 48.8 bits (116), Expect = 4e-08
 Identities = 18/87 (20%), Positives = 41/87 (47%)

Query: 53  RLRWVNYLRPGLKRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFK 112
                +  R  L     T +E G   +     G  WS IAR +  +T ++ KN++  + K
Sbjct: 3   HHHHHSSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKK 62

Query: 113 KEKSSQKQEKRKALLLKQKQQQQKQQQ 139
           ++   +  ++ K  + K++  ++K+++
Sbjct: 63  RQNLDEILQQHKLKMEKERNARRKKKK 89

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 50.0 bits (118), Expect = 2e-07
 Identities = 25/188 (13%), Positives = 52/188 (27%), Gaps = 15/188 (7%)

Query: 12  RKGPWTPEEDKLLTEHVNLLGEGR-----WSSVARSAGLNRSGKSCRLRWVNYLRPGLKR 66
            K  +T EED+ + + V      R     +  ++     N +G S R R+  YL   L+ 
Sbjct: 7   NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEY 65

Query: 67  GQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEKSSQKQEKRKAL 126
                +   ++ +     GN   T            IK  +        +   +++    
Sbjct: 66  VYEVDKFGKLVRDDD---GNLIKT------KVLPPSIKRKFSADEDYTLAIAVKKQFYRD 116

Query: 127 LLKQKQQQQKQQQQHEDNMNRVSSNDEKTMSTAEHEKQMAFMQPAMAMENQSWPTMYQDI 186
           L +      +     ED    ++  +           +  F               +   
Sbjct: 117 LFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQSRRGPIAREFFKH 176

Query: 187 ASWPSDHH 194
            +     H
Sbjct: 177 FAEEHAAH 184

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 39.2 bits (90), Expect = 7e-04
 Identities = 18/105 (17%), Positives = 44/105 (41%), Gaps = 7/105 (6%)

Query: 62  PGLKRGQLTPQEEGIIIELHALWGNK------WSTIARYLPGRTDNEIKNYWRTHFKKE- 114
           P   +   T +E+  I+++      +      +  I+ Y+P  T N I++ +R +  K  
Sbjct: 4   PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRL 63

Query: 115 KSSQKQEKRKALLLKQKQQQQKQQQQHEDNMNRVSSNDEKTMSTA 159
           +   + +K   L+        K +        + S++++ T++ A
Sbjct: 64  EYVYEVDKFGKLVRDDDGNLIKTKVLPPSIKRKFSADEDYTLAIA 108

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 43.6 bits (103), Expect = 1e-06
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 16 WTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNY 59
          W  +E+ LL +    LG G W+ +A   G  R+ + CR  ++  
Sbjct: 12 WGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT 55

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 13 KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRW 56
           G +TPEE + L E     G   W+++  +  L RS  S + R 
Sbjct: 23 VGKYTPEEIEKLKELRIKHG-NDWATIGAA--LGRSASSVKDRC 63

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Length = 235

 Score = 42.8 bits (99), Expect = 4e-05
 Identities = 11/95 (11%), Positives = 42/95 (44%)

Query: 70  TPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEKSSQKQEKRKALLLK 129
           T +E+ + ++    +G  +  I+  +  ++  ++KN++  + ++    +  ++ +A   K
Sbjct: 137 TTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEWEAEHGK 196

Query: 130 QKQQQQKQQQQHEDNMNRVSSNDEKTMSTAEHEKQ 164
           ++      Q+  +   N +   +E+  +     + 
Sbjct: 197 EETNGPSNQKPVKSPDNSIKMPEEEDEAPVLDVRY 231

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 37.9 bits (88), Expect = 2e-04
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 5/59 (8%)

Query: 12 RKGPWTPEEDKLLTEHVNLLGEG---RWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRG 67
           + PWT  + KLL   +     G    W  +AR    ++S + C  R+   L  G   G
Sbjct: 17 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARY-KLLVSGPSSG 73

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 37.1 bits (86), Expect = 4e-04
 Identities = 13/55 (23%), Positives = 30/55 (54%)

Query: 70  TPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEKSSQKQEKRK 124
           T +E+ +  +  A +G +W+ I++ +  RT  ++K+Y R +FK +      ++  
Sbjct: 13  TIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETP 67

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	259
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	100.0
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	100.0
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	100.0
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	100.0
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	100.0
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	100.0
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.97
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.9
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.86
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.77
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.72
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.72
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.71
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.7
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.69
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.68
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.68
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.67
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.66
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.66
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.66
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.64
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.64
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.62
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.61
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.61
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.6
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.6
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.59
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.59
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.58
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.58
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.58
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.58
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.57
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.56
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.56
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.55
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.53
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.53
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.52
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.21
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.45
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.42
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.38
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.08
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.37
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.36
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.35
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.33
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.32
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.29
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.28
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.23
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.22
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.17
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.11
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	99.03
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.91
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.9
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.86
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.81
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.76
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.7
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.69
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.64
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.59
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.55
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.42
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.4
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	98.29
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	98.26
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.26
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	98.15
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.07
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	97.29
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	98.0
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.87
2crg_A	70	Metastasis associated protein MTA3; transcription	97.87
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.82
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.8
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.6
2crg_A	70	Metastasis associated protein MTA3; transcription	97.59
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.48
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.16
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.13
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	97.08
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.05
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	96.96
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	95.96
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	96.01
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	95.48
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	93.48
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	92.23
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	89.84
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	85.9
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	83.19

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=100.00  E-value=2.1e-35  Score=239.56  Aligned_cols=113  Identities=42%  Similarity=0.836  Sum_probs=103.3

Q ss_pred             CCCccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCCCcCCCCCHHhHHHHHHH
Q 047854            1 MGWGATTEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQEEGIIIEL   80 (259)
Q Consensus         1 ~rW~~~l~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l~k~~WT~eED~~Ll~~   80 (259)
                      .||.++++|++++|+||+|||++|+++|..||..+|..||..|+ |||+.||++||.++|+|.+++++||+|||.+|+++
T Consensus        15 ~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~   93 (128)
T 1h8a_C           15 HRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQA   93 (128)
T ss_dssp             -------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHH
T ss_pred             HHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHH
Confidence            38999999999999999999999999999999878999999999 99999999999999999999999999999999999


Q ss_pred             HHHcCCCHHHHHhhCCCCCHHHHHHHHHHhhhcc
Q 047854           81 HALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKE  114 (259)
Q Consensus        81 v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~lkk~  114 (259)
                      +.+||++|+.||++|||||+++|++||+.++++.
T Consensus        94 ~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~  127 (128)
T 1h8a_C           94 HKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK  127 (128)
T ss_dssp             HHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred             HHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999998764

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=100.00  E-value=3.1e-34  Score=224.98  Aligned_cols=104  Identities=44%  Similarity=0.833  Sum_probs=99.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCCCcCCCCCHHhHHHHHHHHHHcCCCHH
Q 047854           10 GWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQEEGIIIELHALWGNKWS   89 (259)
Q Consensus        10 ~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~~W~   89 (259)
                      ++++|+||+|||++|+++|..||..+|..||..|+ +||+.||++||.++|+|.+++++||+|||.+|++++.+||++|+
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~   79 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA   79 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence            47899999999999999999999988999999998 99999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCCHHHHHHHHHHhhhcc
Q 047854           90 TIARYLPGRTDNEIKNYWRTHFKKE  114 (259)
Q Consensus        90 ~Ia~~l~gRT~~qcknrw~~~lkk~  114 (259)
                      .||++|||||+++|++||+.++++.
T Consensus        80 ~Ia~~l~gRt~~~~k~rw~~~~~~~  104 (105)
T 1gv2_A           80 EIAKLLPGRTDNAIKNHWNSTMRRK  104 (105)
T ss_dssp             HHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHhcc
Confidence            9999999999999999999998764

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=100.00  E-value=5e-34  Score=225.13  Aligned_cols=103  Identities=31%  Similarity=0.614  Sum_probs=99.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCCCcCCCCCHHhHHHHHHHHHHcCCCHHHHH
Q 047854           13 KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQEEGIIIELHALWGNKWSTIA   92 (259)
Q Consensus        13 kg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~~W~~Ia   92 (259)
                      ||+||+|||++|+++|..||..+|..||..|+ +||+.||++||.++|+|.+++++||+|||.+|++++.+||++|+.||
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia   79 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS   79 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence            68999999999999999999889999999999 99999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCCHHHHHHHHHHhhhcccc
Q 047854           93 RYLPGRTDNEIKNYWRTHFKKEKS  116 (259)
Q Consensus        93 ~~l~gRT~~qcknrw~~~lkk~~~  116 (259)
                      ++|||||+++|++||+.++++..+
T Consensus        80 ~~l~gRt~~~~k~rw~~l~r~~~~  103 (107)
T 2k9n_A           80 KFLKNRSDNNIRNRWMMIARHRAK  103 (107)
T ss_dssp             HHHSSSCHHHHHHHHHHHHHHHHS
T ss_pred             HHCCCCCHHHHHHHHHHHHhhHHH
Confidence            999999999999999999887543

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=100.00  E-value=1.2e-33  Score=230.47  Aligned_cols=107  Identities=41%  Similarity=0.707  Sum_probs=102.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCCCcCCCCCHHhHHHHHHHHHHcCCCHHHH
Q 047854           12 RKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQEEGIIIELHALWGNKWSTI   91 (259)
Q Consensus        12 rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~~W~~I   91 (259)
                      .||+||+|||++|+.+|..||..+|..||..|+ |||+.||++||.++|+|.+++++||+|||.+|+++|.+||++|+.|
T Consensus         1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I   79 (131)
T 3zqc_A            1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVI   79 (131)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHH
Confidence            379999999999999999999889999999998 9999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCCCHHHHHHHHHHhhhccccchh
Q 047854           92 ARYLPGRTDNEIKNYWRTHFKKEKSSQK  119 (259)
Q Consensus        92 a~~l~gRT~~qcknrw~~~lkk~~~~~~  119 (259)
                      |++|||||+++|++||++++++......
T Consensus        80 a~~l~gRt~~~~k~rw~~~l~~~~~~~~  107 (131)
T 3zqc_A           80 AKLIPGRTDNAIKNRWNSSISKRISTNS  107 (131)
T ss_dssp             TTTSTTCCHHHHHHHHHHTTGGGCCCCT
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHHhhcCC
Confidence            9999999999999999999998765543

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=100.00  E-value=3.7e-33  Score=226.25  Aligned_cols=109  Identities=35%  Similarity=0.675  Sum_probs=103.3

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCCCcCCCCCHHhHHHHHHHHHHcC
Q 047854            6 TTEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQEEGIIIELHALWG   85 (259)
Q Consensus         6 ~l~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G   85 (259)
                      ...+..++|+||+|||++|+++|..||. +|..||..|+ +||+.||++||.++|+|.+++++||+|||.+|++++.+||
T Consensus         4 ~~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G   81 (126)
T 3osg_A            4 VNLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYG   81 (126)
T ss_dssp             BC-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHC
Confidence            3467899999999999999999999999 9999999999 9999999999999999999999999999999999999999


Q ss_pred             CCHHHHHhhCCCCCHHHHHHHHHHhhhcccc
Q 047854           86 NKWSTIARYLPGRTDNEIKNYWRTHFKKEKS  116 (259)
Q Consensus        86 ~~W~~Ia~~l~gRT~~qcknrw~~~lkk~~~  116 (259)
                      .+|+.||++|||||+++|++||..++++...
T Consensus        82 ~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~~~  112 (126)
T 3osg_A           82 RQWAIIAKFFPGRTDIHIKNRWVTISNKLGI  112 (126)
T ss_dssp             SCHHHHHTTSTTCCHHHHHHHHHHHHHHTTC
T ss_pred             cCHHHHHHHcCCCCHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999887543

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=100.00  E-value=4.3e-33  Score=233.51  Aligned_cols=112  Identities=42%  Similarity=0.807  Sum_probs=108.5

Q ss_pred             CCccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCCCcCCCCCHHhHHHHHHHH
Q 047854            2 GWGATTEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQEEGIIIELH   81 (259)
Q Consensus         2 rW~~~l~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v   81 (259)
                      ||.++++|++++|+||+|||++|+.+|..||..+|..||..|+ +||+.||++||.++|+|.+++++||+|||.+|++++
T Consensus        47 Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~  125 (159)
T 1h89_C           47 RWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAH  125 (159)
T ss_dssp             HHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHH
T ss_pred             HHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHH
Confidence            6899999999999999999999999999999878999999998 999999999999999999999999999999999999


Q ss_pred             HHcCCCHHHHHhhCCCCCHHHHHHHHHHhhhcc
Q 047854           82 ALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKE  114 (259)
Q Consensus        82 ~~~G~~W~~Ia~~l~gRT~~qcknrw~~~lkk~  114 (259)
                      .+||++|+.||++|||||+++|++||+.++++.
T Consensus       126 ~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~  158 (159)
T 1h89_C          126 KRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK  158 (159)
T ss_dssp             HHHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred             HHHCCCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999998864

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.97  E-value=1.4e-32  Score=230.47  Aligned_cols=124  Identities=29%  Similarity=0.559  Sum_probs=80.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCCCcCCCCCHHhHHHHHHHHHHcCC-CH
Q 047854           10 GWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQEEGIIIELHALWGN-KW   88 (259)
Q Consensus        10 ~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~-~W   88 (259)
                      .+++++||+|||++|+++|..||..+|..||..|+ +||+.||++||.++|+|.+++++||+|||.+|+++|.+||. +|
T Consensus         3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W   81 (159)
T 1h89_C            3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW   81 (159)
T ss_dssp             -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence            46789999999999999999999889999999999 99999999999999999999999999999999999999996 69


Q ss_pred             HHHHhhCCCCCHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHH
Q 047854           89 STIARYLPGRTDNEIKNYWRTHFKKEKSSQKQEKRKALLLKQKQQQ  134 (259)
Q Consensus        89 ~~Ia~~l~gRT~~qcknrw~~~lkk~~~~~~~~k~e~~~l~~~~~q  134 (259)
                      +.||.+|||||+.||++||.+++.+...+.+|+.+|+.++.+...+
T Consensus        82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~  127 (159)
T 1h89_C           82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKR  127 (159)
T ss_dssp             HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999888777654

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.90  E-value=7.1e-24  Score=171.64  Aligned_cols=96  Identities=26%  Similarity=0.539  Sum_probs=70.5

Q ss_pred             hhhhcccCCCccccchhhhhhccCCCcCCCCCHHhHHHHHHHHHHcCC-CHHHHHhhCCCCCHHHHHHHHHHhhhccccc
Q 047854           39 VARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQEEGIIIELHALWGN-KWSTIARYLPGRTDNEIKNYWRTHFKKEKSS  117 (259)
Q Consensus        39 IA~~l~~gRt~~Qcr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~-~W~~Ia~~l~gRT~~qcknrw~~~lkk~~~~  117 (259)
                      ||+.|+ |||+.||++||.++|+|.+++++||+|||.+|+++|.+||. +|..||.+|||||+.||++||.+++.+...+
T Consensus         1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~   79 (128)
T 1h8a_C            1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK   79 (128)
T ss_dssp             ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred             CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence            789998 99999999999999999999999999999999999999996 6999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHH
Q 047854          118 QKQEKRKALLLKQKQQQQ  135 (259)
Q Consensus       118 ~~~~k~e~~~l~~~~~q~  135 (259)
                      ++|+.+|+.++...+.+.
T Consensus        80 ~~WT~eEd~~L~~~~~~~   97 (128)
T 1h8a_C           80 TSWTEEEDRIIYQAHKRL   97 (128)
T ss_dssp             SCCCHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHH
Confidence            999999998887776553

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=1.3e-22  Score=148.44  Aligned_cols=67  Identities=27%  Similarity=0.613  Sum_probs=64.8

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCCCcCCCCCHHhH
Q 047854            7 TEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQEE   74 (259)
Q Consensus         7 l~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l~k~~WT~eED   74 (259)
                      ..|.+++|+||+|||++|+++|..||..+|..||..|+ +||++||++||.++|+|.+++++||+|||
T Consensus         3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            47899999999999999999999999779999999999 99999999999999999999999999998

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.77  E-value=3.6e-19  Score=157.48  Aligned_cols=106  Identities=19%  Similarity=0.282  Sum_probs=92.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCC-----hhhhhhhcccCCCccccchhhhhhccCCCc-----------------
Q 047854            8 EQGWRKGPWTPEEDKLLTEHVNLLGEGR-----WSSVARSAGLNRSGKSCRLRWVNYLRPGLK-----------------   65 (259)
Q Consensus         8 ~p~~rkg~WT~EED~~L~~lV~~~g~~~-----W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l~-----------------   65 (259)
                      .+.+++++||+|||+.|+++|.++|..+     |..||+.|+ |||++|||+||..+|.+.+.                 
T Consensus         3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G   81 (246)
T 1ign_A            3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG   81 (246)
T ss_dssp             -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence            3567899999999999999999998743     999999999 99999999999999999886                 


Q ss_pred             ------------CCCCCHHhHHHHHHHHHH-c--------------------------------CC--------------
Q 047854           66 ------------RGQLTPQEEGIIIELHAL-W--------------------------------GN--------------   86 (259)
Q Consensus        66 ------------k~~WT~eED~~Ll~~v~~-~--------------------------------G~--------------   86 (259)
                                  +..||.+||-.|...+.+ |                                +.              
T Consensus        82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  161 (246)
T 1ign_A           82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR  161 (246)
T ss_dssp             CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred             CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence                        789999999999998877 1                                11              


Q ss_pred             -----------CHHHHHhhCCCCCHHHHHHHHHHhhhcc
Q 047854           87 -----------KWSTIARYLPGRTDNEIKNYWRTHFKKE  114 (259)
Q Consensus        87 -----------~W~~Ia~~l~gRT~~qcknrw~~~lkk~  114 (259)
                                 .|..||+.+|+||.+++|+||+..++..
T Consensus       162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence                       5999999999999999999999998764

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.72  E-value=3.3e-18  Score=121.28  Aligned_cols=57  Identities=30%  Similarity=0.524  Sum_probs=54.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCCCc
Q 047854            8 EQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLK   65 (259)
Q Consensus         8 ~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l~   65 (259)
                      +|.+++++||+|||++|+++|..||..+|..||+.|+ +||+.||++||.++|+|.++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence            6899999999999999999999999779999999999 99999999999999999875

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.72  E-value=4.9e-18  Score=125.62  Aligned_cols=59  Identities=27%  Similarity=0.377  Sum_probs=47.9

Q ss_pred             chhhhhhccCCCcCCCCCHHhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhhh
Q 047854           53 RLRWVNYLRPGLKRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFK  112 (259)
Q Consensus        53 r~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~lk  112 (259)
                      --||.++|+|.+++++||+|||++|++++.+||++|+.||+.| |||+++||+||+.+.+
T Consensus        10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~~   68 (73)
T 2llk_A           10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMKD   68 (73)
T ss_dssp             ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred             CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence            4589999999999999999999999999999999999999999 9999999999987544

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.71  E-value=4.9e-18  Score=136.75  Aligned_cols=83  Identities=25%  Similarity=0.474  Sum_probs=78.2

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhc----ccCCCccccchhhhhhcc-----CCCcCC-CCCHHhHHH
Q 047854            7 TEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSA----GLNRSGKSCRLRWVNYLR-----PGLKRG-QLTPQEEGI   76 (259)
Q Consensus         7 l~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l----~~gRt~~Qcr~Rw~~~L~-----p~l~k~-~WT~eED~~   76 (259)
                      +.+..++++||+|||+.|+++|.+||.++|..|++.+    + +||..+|++||.+++.     |.++++ +|+++|+.+
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r   89 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR   89 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence            5678899999999999999999999999999999985    6 9999999999999998     999999 999999999


Q ss_pred             HHHHHHHcCCCHHH
Q 047854           77 IIELHALWGNKWST   90 (259)
Q Consensus        77 Ll~~v~~~G~~W~~   90 (259)
                      |++++..+|++|++
T Consensus        90 v~~~h~~~gn~~~~  103 (121)
T 2juh_A           90 VLAAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHccchhc
Confidence            99999999999976

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.70  E-value=6.7e-18  Score=116.37  Aligned_cols=52  Identities=48%  Similarity=0.855  Sum_probs=49.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCC
Q 047854           11 WRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPG   63 (259)
Q Consensus        11 ~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~   63 (259)
                      +++|+||+|||++|+++|..||..+|..||..|+ |||+.||++||.++|+|+
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence            5799999999999999999999878999999998 999999999999999984

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.69  E-value=1e-17  Score=115.37  Aligned_cols=52  Identities=35%  Similarity=0.629  Sum_probs=48.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCC
Q 047854           11 WRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPG   63 (259)
Q Consensus        11 ~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~   63 (259)
                      +++++||+|||++|+++|..||..+|..||+.|+ +||+.||++||.++|+|+
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence            5789999999999999999999989999999999 999999999999999984

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.68  E-value=2.4e-17  Score=120.12  Aligned_cols=66  Identities=26%  Similarity=0.413  Sum_probs=60.0

Q ss_pred             cCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccc-CCCccccchhhhhhccCCCcCCCCC
Q 047854            5 ATTEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGL-NRSGKSCRLRWVNYLRPGLKRGQLT   70 (259)
Q Consensus         5 ~~l~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~-gRt~~Qcr~Rw~~~L~p~l~k~~WT   70 (259)
                      +..++..++++||+|||++|+.+|..||.++|..||..|+. +||+.||++||.++|+|.+.++..+
T Consensus         2 ~~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            2 PEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             -CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            34678899999999999999999999998799999999975 8999999999999999999988764

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=2e-17  Score=120.70  Aligned_cols=64  Identities=20%  Similarity=0.316  Sum_probs=60.1

Q ss_pred             cCCCcCCCCCHHhHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHhhhccccchhhhHHH
Q 047854           61 RPGLKRGQLTPQEEGIIIELHALWG-NKWSTIARYLPGRTDNEIKNYWRTHFKKEKSSQKQEKRK  124 (259)
Q Consensus        61 ~p~l~k~~WT~eED~~Ll~~v~~~G-~~W~~Ia~~l~gRT~~qcknrw~~~lkk~~~~~~~~k~e  124 (259)
                      .|.+++++||+|||.+|+++|.+|| ++|..||.+|++||+.||++||.++|++.+++++|+.+|
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eE   68 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPS   68 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHh
Confidence            5678999999999999999999999 799999999999999999999999999999888888655

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.67  E-value=5.7e-17  Score=130.70  Aligned_cols=79  Identities=32%  Similarity=0.529  Sum_probs=73.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhc----ccCCCccccchhhhhhc-----cCCCcCCCCCHHh-HHHH
Q 047854            8 EQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSA----GLNRSGKSCRLRWVNYL-----RPGLKRGQLTPQE-EGII   77 (259)
Q Consensus         8 ~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l----~~gRt~~Qcr~Rw~~~L-----~p~l~k~~WT~eE-D~~L   77 (259)
                      ....++++||+|||+.|+++|.+||.++|..|++.+    + +||..+|++||.+++     +|.++++.|+++| +.+|
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v  104 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV  104 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence            456688999999999999999999999999999974    5 999999999999999     8999999999999 8999


Q ss_pred             HHHHHHcCCC
Q 047854           78 IELHALWGNK   87 (259)
Q Consensus        78 l~~v~~~G~~   87 (259)
                      ++++..||++
T Consensus       105 ~~~h~~~g~~  114 (122)
T 2roh_A          105 LAAQAYWSVD  114 (122)
T ss_dssp             HHHHHHHHSS
T ss_pred             HHHHHHHhhH
Confidence            9999999974

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=4.5e-17  Score=117.54  Aligned_cols=58  Identities=22%  Similarity=0.314  Sum_probs=54.7

Q ss_pred             hccCCCcCCCCCHHhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhhhccccc
Q 047854           59 YLRPGLKRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEKSS  117 (259)
Q Consensus        59 ~L~p~l~k~~WT~eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~lkk~~~~  117 (259)
                      +|+|.+++++||+|||.+|++++.+||.+|..||+ |+|||++||++||..++++..++
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~   59 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQR   59 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcC
Confidence            69999999999999999999999999999999999 88999999999999999986543

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=1.8e-17  Score=119.61  Aligned_cols=60  Identities=20%  Similarity=0.403  Sum_probs=56.0

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCCCcCCC
Q 047854            6 TTEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQ   68 (259)
Q Consensus         6 ~l~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l~k~~   68 (259)
                      +|+|.+++++||+|||++|+++|..||. +|..||+ ++ |||+.||++||.++|+|.++++.
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~~   61 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRDS   61 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCCC
Confidence            6899999999999999999999999999 9999999 87 89999999999999999776653

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.66  E-value=1.7e-16  Score=112.36  Aligned_cols=56  Identities=21%  Similarity=0.376  Sum_probs=52.5

Q ss_pred             cCCCcCCCCCHHhHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHhhhcccc
Q 047854           61 RPGLKRGQLTPQEEGIIIELHALWG-NKWSTIARYLPGRTDNEIKNYWRTHFKKEKS  116 (259)
Q Consensus        61 ~p~l~k~~WT~eED~~Ll~~v~~~G-~~W~~Ia~~l~gRT~~qcknrw~~~lkk~~~  116 (259)
                      +|.+++++||+|||.+|+++|.+|| ++|+.||++|+|||+.||++||+++|++..+
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence            5788999999999999999999999 5999999999999999999999999998653

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.64  E-value=1.1e-16  Score=113.68  Aligned_cols=55  Identities=24%  Similarity=0.453  Sum_probs=52.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCC
Q 047854            8 EQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPG   63 (259)
Q Consensus         8 ~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~   63 (259)
                      .+.+++++||+|||++|+++|..||..+|..||+.|+ +||+.||++||.++|.+.
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~   57 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGP   57 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCC
Confidence            5789999999999999999999999779999999999 999999999999999875

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.64  E-value=2.2e-16  Score=115.98  Aligned_cols=58  Identities=22%  Similarity=0.328  Sum_probs=54.3

Q ss_pred             ccCCCcCCCCCHHhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhhhccccc
Q 047854           60 LRPGLKRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEKSS  117 (259)
Q Consensus        60 L~p~l~k~~WT~eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~lkk~~~~  117 (259)
                      ++|.+++++||+|||.+|++++.+||.+|..||++|||||++|||+||+.++++....
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            5789999999999999999999999999999999999999999999999999885543

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.62  E-value=4.8e-16  Score=106.95  Aligned_cols=50  Identities=30%  Similarity=0.576  Sum_probs=46.6

Q ss_pred             CcCCCCCHHhHHHHHHHHHHcCC-CHHHHHhhCCCCCHHHHHHHHHHhhhc
Q 047854           64 LKRGQLTPQEEGIIIELHALWGN-KWSTIARYLPGRTDNEIKNYWRTHFKK  113 (259)
Q Consensus        64 l~k~~WT~eED~~Ll~~v~~~G~-~W~~Ia~~l~gRT~~qcknrw~~~lkk  113 (259)
                      +++++||+|||.+|+++|.+||. +|+.||++|+|||+.||++||.++|++
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   51 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            46899999999999999999998 899999999999999999999999876

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.61  E-value=2.5e-16  Score=113.54  Aligned_cols=58  Identities=28%  Similarity=0.544  Sum_probs=49.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcc-cCCCccccchhhhhhccCCCc
Q 047854            8 EQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAG-LNRSGKSCRLRWVNYLRPGLK   65 (259)
Q Consensus         8 ~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~-~gRt~~Qcr~Rw~~~L~p~l~   65 (259)
                      ....+|++||+|||++|+++|.+||.++|..||+.++ .+||+.||++||.++++|.++
T Consensus         6 ~~~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN   64 (64)
T 3sjm_A            6 TNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   64 (64)
T ss_dssp             ----CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence            3446899999999999999999999889999999854 389999999999999998763

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.61  E-value=8.9e-16  Score=105.67  Aligned_cols=50  Identities=32%  Similarity=0.675  Sum_probs=47.4

Q ss_pred             CcCCCCCHHhHHHHHHHHHHcCC-CHHHHHhhCCCCCHHHHHHHHHHhhhc
Q 047854           64 LKRGQLTPQEEGIIIELHALWGN-KWSTIARYLPGRTDNEIKNYWRTHFKK  113 (259)
Q Consensus        64 l~k~~WT~eED~~Ll~~v~~~G~-~W~~Ia~~l~gRT~~qcknrw~~~lkk  113 (259)
                      +++++||+|||.+|+++|.+||. +|+.||++|+|||+.||++||.++|++
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            47899999999999999999997 699999999999999999999999876

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.60  E-value=2e-15  Score=117.71  Aligned_cols=73  Identities=25%  Similarity=0.498  Sum_probs=67.4

Q ss_pred             CCcCCCCCHHhHHHHHHHHHHcCC-CHHHHHhhCCCCCHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHH
Q 047854           63 GLKRGQLTPQEEGIIIELHALWGN-KWSTIARYLPGRTDNEIKNYWRTHFKKEKSSQKQEKRKALLLKQKQQQQ  135 (259)
Q Consensus        63 ~l~k~~WT~eED~~Ll~~v~~~G~-~W~~Ia~~l~gRT~~qcknrw~~~lkk~~~~~~~~k~e~~~l~~~~~q~  135 (259)
                      .+++++||+|||.+|+++|.+||. +|..||.+|||||+.||+.||.+++.+...+++|+.+|+.++...+.+.
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~   74 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRL   74 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHh
Confidence            368999999999999999999997 6999999999999999999999999999999999999998888776553

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.60  E-value=5.2e-16  Score=114.73  Aligned_cols=60  Identities=22%  Similarity=0.215  Sum_probs=48.0

Q ss_pred             CCccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCCCc
Q 047854            2 GWGATTEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLK   65 (259)
Q Consensus         2 rW~~~l~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l~   65 (259)
                      ||.++++|++++|+||+|||++|+++|..||. .|..||+.|  |||+.||++||.. |.....
T Consensus        12 ~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l--gRt~~q~knRw~~-L~~~~~   71 (73)
T 2llk_A           12 ENLYFQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL--GRSASSVKDRCRL-MKDTCN   71 (73)
T ss_dssp             -------CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH--TSCHHHHHHHHHH-CSCCCS
T ss_pred             ceeeecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh--CCCHHHHHHHHHH-HHHHcc
Confidence            78999999999999999999999999999999 699999999  8999999999984 544433

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.59  E-value=2.4e-15  Score=121.34  Aligned_cols=75  Identities=24%  Similarity=0.413  Sum_probs=69.3

Q ss_pred             cCCCcCCCCCHHhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHH
Q 047854           61 RPGLKRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEKSSQKQEKRKALLLKQKQQQQ  135 (259)
Q Consensus        61 ~p~l~k~~WT~eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~lkk~~~~~~~~k~e~~~l~~~~~q~  135 (259)
                      .+..++++||+|||++|+++|.+||.+|..||..|+|||+.||+.||.+++.+...+++|+.+|+.++...+.+.
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~   80 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEY   80 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHH
Confidence            346789999999999999999999999999999999999999999999999999999999999999988877654

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.59  E-value=2.3e-16  Score=128.03  Aligned_cols=88  Identities=20%  Similarity=0.355  Sum_probs=67.5

Q ss_pred             CCccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCCCcCCCCCHHhHHHHHHHH
Q 047854            2 GWGATTEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQEEGIIIELH   81 (259)
Q Consensus         2 rW~~~l~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v   81 (259)
                      ||.++|+|.+++|+||+|||++|+.+|..||. .|..||+.|+ |||..||+.||.++|++.+..++|+.+-    +...
T Consensus        43 Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~-gRt~~~~k~rw~~~l~~~~~~~~~~~~~----~~p~  116 (131)
T 3zqc_A           43 RWFNHLDPAVVKHAWTPEEDETIFRNYLKLGS-KWSVIAKLIP-GRTDNAIKNRWNSSISKRISTNSNHKEI----LLPD  116 (131)
T ss_dssp             HHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCS-CHHHHTTTST-TCCHHHHHHHHHHTTGGGCCCCTTSCCC----CCCC
T ss_pred             HHhhccCccccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHhhcCCCcccc----cCch
Confidence            68899999999999999999999999999998 8999999999 9999999999999999999999888763    1111


Q ss_pred             HHcCCCHHHHHhhC
Q 047854           82 ALWGNKWSTIARYL   95 (259)
Q Consensus        82 ~~~G~~W~~Ia~~l   95 (259)
                      .....+|+.|++.+
T Consensus       117 ~~kk~~~~~i~k~~  130 (131)
T 3zqc_A          117 RSKKRKAADVPKKL  130 (131)
T ss_dssp             CC------------
T ss_pred             hhhhhhhhhcchhc
Confidence            22245588777765

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.58  E-value=2.1e-15  Score=107.00  Aligned_cols=54  Identities=20%  Similarity=0.257  Sum_probs=50.4

Q ss_pred             cCCCcCCCCCHHhHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHhhhcc
Q 047854           61 RPGLKRGQLTPQEEGIIIELHALWG-NKWSTIARYLPGRTDNEIKNYWRTHFKKE  114 (259)
Q Consensus        61 ~p~l~k~~WT~eED~~Ll~~v~~~G-~~W~~Ia~~l~gRT~~qcknrw~~~lkk~  114 (259)
                      .|.+.+++||+|||.+|+++|.+|| ++|..||++|++||+.||++||.+++.+.
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~   57 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP   57 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence            4678899999999999999999999 79999999999999999999999998753

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.58  E-value=3.1e-15  Score=108.82  Aligned_cols=59  Identities=25%  Similarity=0.258  Sum_probs=53.9

Q ss_pred             ccCCCcCCCCCHHhHHHHHHHHHHcC-CCHHHHHhhCC--CCCHHHHHHHHHHhhhccccch
Q 047854           60 LRPGLKRGQLTPQEEGIIIELHALWG-NKWSTIARYLP--GRTDNEIKNYWRTHFKKEKSSQ  118 (259)
Q Consensus        60 L~p~l~k~~WT~eED~~Ll~~v~~~G-~~W~~Ia~~l~--gRT~~qcknrw~~~lkk~~~~~  118 (259)
                      ..|..++++||+|||.+|+++|.+|| ++|+.||.+|+  |||+.||++||++++++...+.
T Consensus         4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~   65 (69)
T 1ity_A            4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISS   65 (69)
T ss_dssp             TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCC
Confidence            45677899999999999999999999 69999999999  9999999999999999876543

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=6.1e-16  Score=114.20  Aligned_cols=60  Identities=27%  Similarity=0.347  Sum_probs=55.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCC-----CChhhhhhhcccCCCccccchhhhhhccCCCcCCC
Q 047854            8 EQGWRKGPWTPEEDKLLTEHVNLLGE-----GRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQ   68 (259)
Q Consensus         8 ~p~~rkg~WT~EED~~L~~lV~~~g~-----~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l~k~~   68 (259)
                      +|++++++||+|||++|+++|..||.     .+|..||+.|+ +||..||++||.++|.+.++.+.
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~   67 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI   67 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence            68999999999999999999999995     58999999999 99999999999999998777664

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.58  E-value=7.3e-16  Score=113.14  Aligned_cols=59  Identities=20%  Similarity=0.402  Sum_probs=55.2

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCCCcC
Q 047854            6 TTEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKR   66 (259)
Q Consensus         6 ~l~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l~k   66 (259)
                      +.+|.+++++||+|||++|+++|..||. +|..||..|+ |||..||+.||.++|.+.++.
T Consensus         2 s~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            2 SSGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence            4689999999999999999999999999 9999999999 999999999999999876655

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.57  E-value=4e-15  Score=102.91  Aligned_cols=49  Identities=29%  Similarity=0.339  Sum_probs=46.2

Q ss_pred             cCCCCCHHhHHHHHHHHHHcC-CCHHHHHhhCC--CCCHHHHHHHHHHhhhc
Q 047854           65 KRGQLTPQEEGIIIELHALWG-NKWSTIARYLP--GRTDNEIKNYWRTHFKK  113 (259)
Q Consensus        65 ~k~~WT~eED~~Ll~~v~~~G-~~W~~Ia~~l~--gRT~~qcknrw~~~lkk  113 (259)
                      ++++||+|||.+|+++|.+|| ++|+.||..|+  |||+.||++||.++++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~   52 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL   52 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            478999999999999999999 69999999999  99999999999999874

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.56  E-value=1.9e-15  Score=106.66  Aligned_cols=53  Identities=25%  Similarity=0.516  Sum_probs=48.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhc
Q 047854            8 EQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYL   60 (259)
Q Consensus         8 ~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L   60 (259)
                      +..+.+++||+|||++|+++|.+||..+|..||+.|+.+||+.||++||.+++
T Consensus         4 ~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            4 GSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            34566899999999999999999997799999999976799999999999875

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.56  E-value=1.8e-15  Score=104.67  Aligned_cols=50  Identities=32%  Similarity=0.554  Sum_probs=46.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccc-CCCccccchhhhhhcc
Q 047854           12 RKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGL-NRSGKSCRLRWVNYLR   61 (259)
Q Consensus        12 rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~-gRt~~Qcr~Rw~~~L~   61 (259)
                      ++++||+|||++|+++|..||.++|..||..++. +||+.||++||.+++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            5899999999999999999998799999999964 6999999999999875

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.55  E-value=8.4e-15  Score=114.92  Aligned_cols=69  Identities=17%  Similarity=0.353  Sum_probs=64.6

Q ss_pred             CCCCCHHhHHHHHHHHHHcCC-CHHHHHhhCCCCCHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHH
Q 047854           66 RGQLTPQEEGIIIELHALWGN-KWSTIARYLPGRTDNEIKNYWRTHFKKEKSSQKQEKRKALLLKQKQQQ  134 (259)
Q Consensus        66 k~~WT~eED~~Ll~~v~~~G~-~W~~Ia~~l~gRT~~qcknrw~~~lkk~~~~~~~~k~e~~~l~~~~~q  134 (259)
                      +++||+|||.+|+++|.+||. +|..||..|||||+.||+.||.+++.+...+++|+.+|+.++...+.+
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~   70 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAE   70 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHH
Confidence            579999999999999999996 799999999999999999999999999999999999999888777655

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=6.3e-15  Score=108.69  Aligned_cols=56  Identities=20%  Similarity=0.226  Sum_probs=52.0

Q ss_pred             cCCCcCCCCCHHhHHHHHHHHHHcC------CCHHHHHhhCCCCCHHHHHHHHHHhhhcccc
Q 047854           61 RPGLKRGQLTPQEEGIIIELHALWG------NKWSTIARYLPGRTDNEIKNYWRTHFKKEKS  116 (259)
Q Consensus        61 ~p~l~k~~WT~eED~~Ll~~v~~~G------~~W~~Ia~~l~gRT~~qcknrw~~~lkk~~~  116 (259)
                      +|.+.+++||+|||.+|++++.+||      .+|..||.+|+|||+.||++||++++.+..+
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k   64 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTK   64 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGST
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence            5788999999999999999999999      6899999999999999999999999887544

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.53  E-value=1.3e-14  Score=104.50  Aligned_cols=52  Identities=27%  Similarity=0.437  Sum_probs=46.9

Q ss_pred             CcCCCCCHHhHHHHHHHHHHcC-CCHHHHHhhCC--CCCHHHHHHHHHHhhhccc
Q 047854           64 LKRGQLTPQEEGIIIELHALWG-NKWSTIARYLP--GRTDNEIKNYWRTHFKKEK  115 (259)
Q Consensus        64 l~k~~WT~eED~~Ll~~v~~~G-~~W~~Ia~~l~--gRT~~qcknrw~~~lkk~~  115 (259)
                      .++++||+|||++|+++|.+|| ++|+.||+.++  |||+.||++||++++++..
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl   63 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   63 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence            4788999999999999999999 58999999865  9999999999999988753

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.52  E-value=1.5e-14  Score=102.08  Aligned_cols=50  Identities=22%  Similarity=0.408  Sum_probs=46.5

Q ss_pred             CCCcCCCCCHHhHHHHHHHHHHcC-CCHHHHHhhCC-CCCHHHHHHHHHHhh
Q 047854           62 PGLKRGQLTPQEEGIIIELHALWG-NKWSTIARYLP-GRTDNEIKNYWRTHF  111 (259)
Q Consensus        62 p~l~k~~WT~eED~~Ll~~v~~~G-~~W~~Ia~~l~-gRT~~qcknrw~~~l  111 (259)
                      ..+.+++||++||.+|+++|.+|| ++|..||++|+ +||+.||++||.+++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            456788999999999999999999 89999999999 999999999998875

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.21  E-value=3.4e-15  Score=114.06  Aligned_cols=56  Identities=27%  Similarity=0.290  Sum_probs=53.0

Q ss_pred             hccCCCcCCCCCHHhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhhhcc
Q 047854           59 YLRPGLKRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKE  114 (259)
Q Consensus        59 ~L~p~l~k~~WT~eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~lkk~  114 (259)
                      .++|.+.+++||+|||.+|++++.+||.+|+.||.+|+|||++||++||+.++++.
T Consensus         9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~   64 (89)
T 2ltp_A            9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ   64 (89)
Confidence            56788999999999999999999999999999999999999999999999998873

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.45  E-value=1e-13  Score=104.72  Aligned_cols=69  Identities=28%  Similarity=0.497  Sum_probs=60.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChhhhhhh----cccCCCccccchhhhhhc-----cCCCcCC-CCCHHhHHHHHHHHHH
Q 047854           14 GPWTPEEDKLLTEHVNLLGEGRWSSVARS----AGLNRSGKSCRLRWVNYL-----RPGLKRG-QLTPQEEGIIIELHAL   83 (259)
Q Consensus        14 g~WT~EED~~L~~lV~~~g~~~W~~IA~~----l~~gRt~~Qcr~Rw~~~L-----~p~l~k~-~WT~eED~~Ll~~v~~   83 (259)
                      ++||+|||+.|+++|.+||.++|..|++.    |+ +||..+|++||.+++     +|.++++ +..++...+++.+...
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~   79 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY   79 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence            47999999999999999999999999996    77 999999999999988     6776665 6777777888888764

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.42  E-value=1.4e-13  Score=108.27  Aligned_cols=78  Identities=28%  Similarity=0.520  Sum_probs=67.1

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhc----ccCCCccccchhhhhhc-----cCCCcCCCCCHHhHHH-
Q 047854            7 TEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSA----GLNRSGKSCRLRWVNYL-----RPGLKRGQLTPQEEGI-   76 (259)
Q Consensus         7 l~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l----~~gRt~~Qcr~Rw~~~L-----~p~l~k~~WT~eED~~-   76 (259)
                      ..+..++++||+|||+.|+++|.+||.++|..|++.+    + +||..+|++||.+++     +|.++++.-++.|-.. 
T Consensus         7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~-~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~r   85 (105)
T 2aje_A            7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDAD-HRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNR   85 (105)
T ss_dssp             --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTT-CCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHH
Confidence            3577889999999999999999999999999999965    5 999999999999998     6899999888877555 


Q ss_pred             HHHHHHHcC
Q 047854           77 IIELHALWG   85 (259)
Q Consensus        77 Ll~~v~~~G   85 (259)
                      ++++...+|
T Consensus        86 v~~~~~~~~   94 (105)
T 2aje_A           86 VLNAHGYWT   94 (105)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777776655

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.38  E-value=4e-13  Score=99.17  Aligned_cols=52  Identities=12%  Similarity=0.251  Sum_probs=47.7

Q ss_pred             CCCcCCCCCHHhHHHHHHHHHHcC----CCHHHHHhhCCCCCHHHHHHHHHHhhhc
Q 047854           62 PGLKRGQLTPQEEGIIIELHALWG----NKWSTIARYLPGRTDNEIKNYWRTHFKK  113 (259)
Q Consensus        62 p~l~k~~WT~eED~~Ll~~v~~~G----~~W~~Ia~~l~gRT~~qcknrw~~~lkk  113 (259)
                      +...+++||.+||.+|++++..||    .+|.+||++|||||.++|++||..++..
T Consensus        14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d   69 (73)
T 2cqr_A           14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG   69 (73)
T ss_dssp             TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred             cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence            456788999999999999999999    6799999999999999999999988764

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.08  E-value=3.9e-14  Score=108.21  Aligned_cols=54  Identities=24%  Similarity=0.446  Sum_probs=51.3

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhcc
Q 047854            6 TTEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLR   61 (259)
Q Consensus         6 ~l~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~   61 (259)
                      ++.|.+++|+||+|||++|+++|..||. +|..||..|+ |||..||+.||.++|.
T Consensus         9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lr   62 (89)
T 2ltp_A            9 SGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKK   62 (89)
Confidence            4679999999999999999999999999 8999999999 9999999999998875

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.37  E-value=3e-13  Score=101.24  Aligned_cols=51  Identities=24%  Similarity=0.534  Sum_probs=47.0

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhh
Q 047854            7 TEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNY   59 (259)
Q Consensus         7 l~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~   59 (259)
                      ..+...+++||+|||++|+++|..|| .+|.+||++|+ +||..||+.||.++
T Consensus        12 ~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~   62 (79)
T 2yus_A           12 SKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL   62 (79)
T ss_dssp             CCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred             ccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            34566789999999999999999999 59999999999 99999999999987

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.36  E-value=5.8e-13  Score=99.67  Aligned_cols=48  Identities=17%  Similarity=0.288  Sum_probs=45.5

Q ss_pred             CCcCCCCCHHhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHh
Q 047854           63 GLKRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTH  110 (259)
Q Consensus        63 ~l~k~~WT~eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~  110 (259)
                      ...+++||+|||.+|++++.+||.+|..||+++++||+.||+.||..+
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            456889999999999999999999999999999999999999999887

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.35  E-value=2.1e-12  Score=103.88  Aligned_cols=71  Identities=15%  Similarity=0.217  Sum_probs=57.3

Q ss_pred             ccCCCcCCCCCHHhHHHHHHHHHHcCC-CHHHHHhh----CCCCCHHHHHHHHHHhhh-----ccccch-hhhHHHHHHH
Q 047854           60 LRPGLKRGQLTPQEEGIIIELHALWGN-KWSTIARY----LPGRTDNEIKNYWRTHFK-----KEKSSQ-KQEKRKALLL  128 (259)
Q Consensus        60 L~p~l~k~~WT~eED~~Ll~~v~~~G~-~W~~Ia~~----l~gRT~~qcknrw~~~lk-----k~~~~~-~~~k~e~~~l  128 (259)
                      +.+..++++||+|||+.|+++|.+||. +|+.|++.    |++||+.+||+||+++++     +..+++ ++...+...+
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv   90 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV   90 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence            456778999999999999999999997 99999997    599999999999999998     544443 4445444444


Q ss_pred             HH
Q 047854          129 KQ  130 (259)
Q Consensus       129 ~~  130 (259)
                      ..
T Consensus        91 ~~   92 (121)
T 2juh_A           91 LA   92 (121)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.33  E-value=4.9e-13  Score=98.72  Aligned_cols=54  Identities=22%  Similarity=0.445  Sum_probs=48.5

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCC---CChhhhhhhcccCCCccccchhhhhhcc
Q 047854            7 TEQGWRKGPWTPEEDKLLTEHVNLLGE---GRWSSVARSAGLNRSGKSCRLRWVNYLR   61 (259)
Q Consensus         7 l~p~~rkg~WT~EED~~L~~lV~~~g~---~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~   61 (259)
                      ..+...+++||++||++|+.+|..||.   .+|.+||+.|| |||..||+.||..++.
T Consensus        12 ~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           12 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS   68 (73)
T ss_dssp             CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred             cccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            346678899999999999999999993   47999999999 9999999999998764

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.32  E-value=1.9e-12  Score=114.64  Aligned_cols=73  Identities=19%  Similarity=0.376  Sum_probs=61.8

Q ss_pred             CCCcCCCCCHHhHHHHHHHHHHcCCC------HHHHHhhCCCCCHHHHHHHHHHhhhcccc-------------------
Q 047854           62 PGLKRGQLTPQEEGIIIELHALWGNK------WSTIARYLPGRTDNEIKNYWRTHFKKEKS-------------------  116 (259)
Q Consensus        62 p~l~k~~WT~eED~~Ll~~v~~~G~~------W~~Ia~~l~gRT~~qcknrw~~~lkk~~~-------------------  116 (259)
                      +.+++++||+|||++|+++|.+||++      |..||++|||||+++||+||+.+|++...                   
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~   83 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL   83 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCc
Confidence            35688999999999999999999985      99999999999999999999999999875                   


Q ss_pred             ----------chhhhHHHHHHHHHHHHH
Q 047854          117 ----------SQKQEKRKALLLKQKQQQ  134 (259)
Q Consensus       117 ----------~~~~~k~e~~~l~~~~~q  134 (259)
                                +.+++.+++..|......
T Consensus        84 ikis~lp~siK~rftaeeDy~L~~~i~~  111 (246)
T 1ign_A           84 IKTKVLPPSIKRKFSADEDYTLAIAVKK  111 (246)
T ss_dssp             CEESSCCCCSCCCCCHHHHHHHHHHHHH
T ss_pred             eeeeccCccccCccchhccHHHHHHHHH
Confidence                      678888888777665544

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.29  E-value=4e-12  Score=90.68  Aligned_cols=51  Identities=18%  Similarity=0.333  Sum_probs=47.1

Q ss_pred             CcCCCCCHHhHHHHHHHHHHcCCCHHHHH---hhCCCCCHHHHHHHHHHhhhcc
Q 047854           64 LKRGQLTPQEEGIIIELHALWGNKWSTIA---RYLPGRTDNEIKNYWRTHFKKE  114 (259)
Q Consensus        64 l~k~~WT~eED~~Ll~~v~~~G~~W~~Ia---~~l~gRT~~qcknrw~~~lkk~  114 (259)
                      .++.+||+|||+.|++.|++||.+|+.|+   .+|++||..++|+||+++.++.
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~   59 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISGP   59 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence            36789999999999999999999999999   5779999999999999998764

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.28  E-value=4.3e-12  Score=95.80  Aligned_cols=47  Identities=19%  Similarity=0.378  Sum_probs=44.0

Q ss_pred             CCCCHHhHHHHHHHHHHcCC-CHHHHHhh----CCCCCHHHHHHHHHHhhhc
Q 047854           67 GQLTPQEEGIIIELHALWGN-KWSTIARY----LPGRTDNEIKNYWRTHFKK  113 (259)
Q Consensus        67 ~~WT~eED~~Ll~~v~~~G~-~W~~Ia~~----l~gRT~~qcknrw~~~lkk  113 (259)
                      .+||+|||+.|+++|.+||. +|+.|++.    |++||+.+||+||+++++.
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~   52 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT   52 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHh
Confidence            47999999999999999997 89999996    8999999999999999974

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.23  E-value=1.1e-11  Score=97.47  Aligned_cols=52  Identities=17%  Similarity=0.328  Sum_probs=47.8

Q ss_pred             CCCcCCCCCHHhHHHHHHHHHHcCC-CHHHHHhhC----CCCCHHHHHHHHHHhhhc
Q 047854           62 PGLKRGQLTPQEEGIIIELHALWGN-KWSTIARYL----PGRTDNEIKNYWRTHFKK  113 (259)
Q Consensus        62 p~l~k~~WT~eED~~Ll~~v~~~G~-~W~~Ia~~l----~gRT~~qcknrw~~~lkk  113 (259)
                      +..++++||+|||+.|+++|.+||. +|+.|++.+    ++||+.+||+||+++++.
T Consensus         9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~   65 (105)
T 2aje_A            9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT   65 (105)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence            4568899999999999999999997 899999965    899999999999999974

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.22  E-value=1.5e-11  Score=99.00  Aligned_cols=63  Identities=17%  Similarity=0.312  Sum_probs=52.5

Q ss_pred             CCCcCCCCCHHhHHHHHHHHHHcCC-CHHHHHhh----CCCCCHHHHHHHHHHhhh-----ccccchhhhHHH
Q 047854           62 PGLKRGQLTPQEEGIIIELHALWGN-KWSTIARY----LPGRTDNEIKNYWRTHFK-----KEKSSQKQEKRK  124 (259)
Q Consensus        62 p~l~k~~WT~eED~~Ll~~v~~~G~-~W~~Ia~~----l~gRT~~qcknrw~~~lk-----k~~~~~~~~k~e  124 (259)
                      ...++++||+|||+.|+++|.+||. +|+.|++.    |++||..+||+||+++++     +..+++.+..++
T Consensus        27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e   99 (122)
T 2roh_A           27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQE   99 (122)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHH
Confidence            3457889999999999999999997 89999986    489999999999999995     444555555444

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.17  E-value=2.8e-11  Score=93.15  Aligned_cols=49  Identities=20%  Similarity=0.432  Sum_probs=44.5

Q ss_pred             cCCCCCHHhHHHHHHHHHHcC----CCHHHHHhhCCCCCHHHHHHHHHHhhhc
Q 047854           65 KRGQLTPQEEGIIIELHALWG----NKWSTIARYLPGRTDNEIKNYWRTHFKK  113 (259)
Q Consensus        65 ~k~~WT~eED~~Ll~~v~~~G----~~W~~Ia~~l~gRT~~qcknrw~~~lkk  113 (259)
                      .+++||.|||.+|++++..||    .+|.+||.+|||||.++|++||..++..
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~d   59 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED   59 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            467999999999999999996    5799999999999999999999988754

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.11  E-value=2.3e-11  Score=93.66  Aligned_cols=48  Identities=21%  Similarity=0.536  Sum_probs=43.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC---CChhhhhhhcccCCCccccchhhhhhc
Q 047854           12 RKGPWTPEEDKLLTEHVNLLGE---GRWSSVARSAGLNRSGKSCRLRWVNYL   60 (259)
Q Consensus        12 rkg~WT~EED~~L~~lV~~~g~---~~W~~IA~~l~~gRt~~Qcr~Rw~~~L   60 (259)
                      .+++||+|||++|++++..|+.   .+|.+||+.|| |||..||+.||..++
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~   57 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV   57 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            4678999999999999999973   47999999999 999999999999764

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.03  E-value=4.4e-10  Score=79.75  Aligned_cols=48  Identities=19%  Similarity=0.178  Sum_probs=43.9

Q ss_pred             cCCCCCHHhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhhh
Q 047854           65 KRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFK  112 (259)
Q Consensus        65 ~k~~WT~eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~lk  112 (259)
                      ..++||++|+.++++++..||.+|..||.+||+||..+|..+|....+
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk   58 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK   58 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence            457899999999999999999999999999999999999999965543

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.91  E-value=1e-09  Score=77.88  Aligned_cols=50  Identities=14%  Similarity=0.195  Sum_probs=44.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhh
Q 047854            8 EQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNY   59 (259)
Q Consensus         8 ~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~   59 (259)
                      ...-..++||+||++++++++..||. +|..||..|+ +||..||..+|...
T Consensus         7 ~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l~-~rt~~~~v~~Yy~~   56 (61)
T 2eqr_A            7 GDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYLE-RKSVPDCVLYYYLT   56 (61)
T ss_dssp             CCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHCT-TSCHHHHHHHHHHH
T ss_pred             cccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            34456689999999999999999997 8999999999 99999999998754

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.90  E-value=2.3e-09  Score=82.43  Aligned_cols=61  Identities=15%  Similarity=0.183  Sum_probs=55.7

Q ss_pred             cccchhhhhhccCCCcCCCCCHHhHHHHHHHHHHcCCCHHHHHhhC-----CCCCHHHHHHHHHHhhhcc
Q 047854           50 KSCRLRWVNYLRPGLKRGQLTPQEEGIIIELHALWGNKWSTIARYL-----PGRTDNEIKNYWRTHFKKE  114 (259)
Q Consensus        50 ~Qcr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~~W~~Ia~~l-----~gRT~~qcknrw~~~lkk~  114 (259)
                      .=+.++|.++|.+    .+||.||+..|++++++|+.+|..|+..+     ++||..++|+||..+.++.
T Consensus        18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l   83 (93)
T 3hm5_A           18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKL   83 (93)
T ss_dssp             CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHH
Confidence            4578999999976    89999999999999999999999999998     5899999999999887763

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.86  E-value=1.2e-09  Score=77.79  Aligned_cols=49  Identities=18%  Similarity=0.300  Sum_probs=44.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChhhhh---hhcccCCCccccchhhhhhcc
Q 047854           11 WRKGPWTPEEDKLLTEHVNLLGEGRWSSVA---RSAGLNRSGKSCRLRWVNYLR   61 (259)
Q Consensus        11 ~rkg~WT~EED~~L~~lV~~~g~~~W~~IA---~~l~~gRt~~Qcr~Rw~~~L~   61 (259)
                      -++.+||+|||+.|+++|.+||. .|..|+   ..++ +||...+++||+++..
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence            37899999999999999999999 999999   4666 9999999999998654

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.81  E-value=5e-09  Score=76.90  Aligned_cols=50  Identities=14%  Similarity=0.218  Sum_probs=45.0

Q ss_pred             CCcCCCCCHHhHHHHHHHHHHcC----CCHHHHHhhCCCCCHHHHHHHHHHhhhc
Q 047854           63 GLKRGQLTPQEEGIIIELHALWG----NKWSTIARYLPGRTDNEIKNYWRTHFKK  113 (259)
Q Consensus        63 ~l~k~~WT~eED~~Ll~~v~~~G----~~W~~Ia~~l~gRT~~qcknrw~~~lkk  113 (259)
                      ....++||.|||.+|.+++..|+    .+|.+||.++ |||..+|+.||..+...
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence            44678999999999999999997    5699999998 99999999999888765

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.76  E-value=9.4e-09  Score=90.34  Aligned_cols=49  Identities=12%  Similarity=0.301  Sum_probs=45.9

Q ss_pred             cCCCCCHHhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhhhc
Q 047854           65 KRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKK  113 (259)
Q Consensus        65 ~k~~WT~eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~lkk  113 (259)
                      ..++||+||+.++++++.+||++|..||+.+++||..||+++|....++
T Consensus       132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            4568999999999999999999999999999999999999999877765

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.70  E-value=1.2e-08  Score=98.64  Aligned_cols=47  Identities=13%  Similarity=0.331  Sum_probs=43.2

Q ss_pred             CCCCHHhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhhhc
Q 047854           67 GQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKK  113 (259)
Q Consensus        67 ~~WT~eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~lkk  113 (259)
                      .+||++|..++++++.+||.+|..||+.+++||..|||++|..+.++
T Consensus       381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr  427 (482)
T 2xag_B          381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  427 (482)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999999999999765444

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.69  E-value=8.8e-09  Score=75.61  Aligned_cols=52  Identities=21%  Similarity=0.279  Sum_probs=45.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC---CChhhhhhhcccCCCccccchhhhhhccC
Q 047854            9 QGWRKGPWTPEEDKLLTEHVNLLGE---GRWSSVARSAGLNRSGKSCRLRWVNYLRP   62 (259)
Q Consensus         9 p~~rkg~WT~EED~~L~~lV~~~g~---~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p   62 (259)
                      .+...++||.|||++|.+++..|+.   ++|.+||+.+  |||..+|+.||..+...
T Consensus         4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHHh
Confidence            4456789999999999999999984   4799999997  69999999999876543

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.64  E-value=2e-08  Score=73.96  Aligned_cols=50  Identities=28%  Similarity=0.492  Sum_probs=44.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC---CChhhhhhhcccCCCccccchhhhhhccC
Q 047854           12 RKGPWTPEEDKLLTEHVNLLGE---GRWSSVARSAGLNRSGKSCRLRWVNYLRP   62 (259)
Q Consensus        12 rkg~WT~EED~~L~~lV~~~g~---~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p   62 (259)
                      ....||.+|+++|..++..|+.   ++|.+||..+| |||..+|+.||..++.-
T Consensus         7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A            7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHhc
Confidence            3467999999999999999986   47999999999 99999999999977543

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.59  E-value=5.2e-08  Score=71.68  Aligned_cols=52  Identities=15%  Similarity=0.147  Sum_probs=45.9

Q ss_pred             CCCCCHHhHHHHHHHHHHcCC----CHHHHHhhCCCCCHHHHHHHHHHhhhccccc
Q 047854           66 RGQLTPQEEGIIIELHALWGN----KWSTIARYLPGRTDNEIKNYWRTHFKKEKSS  117 (259)
Q Consensus        66 k~~WT~eED~~Ll~~v~~~G~----~W~~Ia~~l~gRT~~qcknrw~~~lkk~~~~  117 (259)
                      ...||.+|+.+|.+++..|+.    +|..||..++|||..+|+.||..+++...+.
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~~s~   63 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGKGSQ   63 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSSCCC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhccccc
Confidence            458999999999999999984    5999999999999999999999987764443

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.55  E-value=3e-08  Score=70.04  Aligned_cols=48  Identities=23%  Similarity=0.347  Sum_probs=43.2

Q ss_pred             CCCCCHHHHHHHHHHHHHh--------CCCChhhhhh-hcccCCCccccchhhhhhcc
Q 047854           13 KGPWTPEEDKLLTEHVNLL--------GEGRWSSVAR-SAGLNRSGKSCRLRWVNYLR   61 (259)
Q Consensus        13 kg~WT~EED~~L~~lV~~~--------g~~~W~~IA~-~l~~gRt~~Qcr~Rw~~~L~   61 (259)
                      +.+||+|||..|++.|..|        |..-|..+|+ .++ ++|-.+||+||.++|.
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence            5689999999999999999        5446999999 788 9999999999999874

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.42  E-value=1.1e-07  Score=83.57  Aligned_cols=48  Identities=27%  Similarity=0.472  Sum_probs=44.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhcc
Q 047854           12 RKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLR   61 (259)
Q Consensus        12 rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~   61 (259)
                      ..++||+||++++++++..||. +|..||+.|+ +||..||+.+|.++..
T Consensus       132 ~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~Vg-TKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          132 CNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            4678999999999999999998 8999999999 9999999999987653

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.40  E-value=3.1e-07  Score=64.81  Aligned_cols=47  Identities=19%  Similarity=0.363  Sum_probs=42.4

Q ss_pred             CCCCCHHhHHHHHHHHHHc--------CCC-HHHHHh-hCCCCCHHHHHHHHHHhhh
Q 047854           66 RGQLTPQEEGIIIELHALW--------GNK-WSTIAR-YLPGRTDNEIKNYWRTHFK  112 (259)
Q Consensus        66 k~~WT~eED~~Ll~~v~~~--------G~~-W~~Ia~-~l~gRT~~qcknrw~~~lk  112 (259)
                      +.+||+|||..|++.|.+|        |++ |..+++ .+|++|-.+||+||.+.|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            5689999999999999999        444 999999 7999999999999998774

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=98.29  E-value=2.3e-06  Score=78.48  Aligned_cols=99  Identities=15%  Similarity=0.218  Sum_probs=79.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccch-------hhhh---------h------------------
Q 047854           14 GPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRL-------RWVN---------Y------------------   59 (259)
Q Consensus        14 g~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~-------Rw~~---------~------------------   59 (259)
                      +.||..+...++.++.+||..+|..||..|+ |+|...++.       ||..         .                  
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l  189 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL  189 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5699999999999999999999999999998 999976643       2200         0                  


Q ss_pred             -------------c---cCCCcCCCCCHHhHHHHHHHHHHcCC----CHHHHH---h---------hCCCCCHHHHHHHH
Q 047854           60 -------------L---RPGLKRGQLTPQEEGIIIELHALWGN----KWSTIA---R---------YLPGRTDNEIKNYW  107 (259)
Q Consensus        60 -------------L---~p~l~k~~WT~eED~~Ll~~v~~~G~----~W~~Ia---~---------~l~gRT~~qcknrw  107 (259)
                                   |   .+..+...||++||+.||-++.+||-    .|..|.   +         +|..||+.+|..|.
T Consensus       190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc  269 (304)
T 1ofc_X          190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC  269 (304)
T ss_dssp             HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred             HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence                         0   11224568999999999999999996    399996   2         45679999999999


Q ss_pred             HHhhhc
Q 047854          108 RTHFKK  113 (259)
Q Consensus       108 ~~~lkk  113 (259)
                      ..+++-
T Consensus       270 ~tLi~~  275 (304)
T 1ofc_X          270 NTLITL  275 (304)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988864

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=98.26  E-value=1.6e-07  Score=68.92  Aligned_cols=44  Identities=18%  Similarity=0.422  Sum_probs=39.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC---ChhhhhhhcccCCCccccchhhh
Q 047854           13 KGPWTPEEDKLLTEHVNLLGEG---RWSSVARSAGLNRSGKSCRLRWV   57 (259)
Q Consensus        13 kg~WT~EED~~L~~lV~~~g~~---~W~~IA~~l~~gRt~~Qcr~Rw~   57 (259)
                      .++||.+|+++|..++..|+.+   +|.+||+.|| |||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence            4679999999999999999774   7999999999 999999999985

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.26  E-value=2.6e-06  Score=60.63  Aligned_cols=49  Identities=14%  Similarity=0.217  Sum_probs=44.4

Q ss_pred             cCCCcCCCCCHHhHHHHHHHHHHcCCCHHHHHh-hCCCCCHHHHHHHHHH
Q 047854           61 RPGLKRGQLTPQEEGIIIELHALWGNKWSTIAR-YLPGRTDNEIKNYWRT  109 (259)
Q Consensus        61 ~p~l~k~~WT~eED~~Ll~~v~~~G~~W~~Ia~-~l~gRT~~qcknrw~~  109 (259)
                      .|.+...+||+||-.+..+++.+||.+|..|++ .+++||..+|...|..
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence            366778899999999999999999999999999 5899999999988853

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.15  E-value=2.6e-06  Score=64.77  Aligned_cols=46  Identities=20%  Similarity=0.320  Sum_probs=43.0

Q ss_pred             CCCHHhHHHHHHHHHHcCC---CHHHHHhhCCCCCHHHHHHHHHHhhhc
Q 047854           68 QLTPQEEGIIIELHALWGN---KWSTIARYLPGRTDNEIKNYWRTHFKK  113 (259)
Q Consensus        68 ~WT~eED~~Ll~~v~~~G~---~W~~Ia~~l~gRT~~qcknrw~~~lkk  113 (259)
                      .||.|||+.||..+.+-|.   .|..||+.|.+|+++||++||+.+++-
T Consensus        35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~L   83 (95)
T 1ug2_A           35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL   83 (95)
T ss_dssp             SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred             EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence            6999999999999999986   699999999999999999999988763

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.07  E-value=3.5e-06  Score=59.94  Aligned_cols=50  Identities=12%  Similarity=0.147  Sum_probs=45.3

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhh-hcccCCCccccchhhhh
Q 047854            7 TEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVAR-SAGLNRSGKSCRLRWVN   58 (259)
Q Consensus         7 l~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~-~l~~gRt~~Qcr~Rw~~   58 (259)
                      ..|.+...+||+||-+++.+++..||. +|..|++ .|+ +||..+|..-|..
T Consensus         3 ~~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            3 SGSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLP-NKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred             CCCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCcHHHHHHHHhc
Confidence            468888899999999999999999999 8999999 588 9999999887753

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=97.29  E-value=6.4e-07  Score=64.66  Aligned_cols=45  Identities=16%  Similarity=0.260  Sum_probs=42.2

Q ss_pred             CCCHHhHHHHHHHHHHcCC---CHHHHHhhCCCCCHHHHHHHHHHhhhc
Q 047854           68 QLTPQEEGIIIELHALWGN---KWSTIARYLPGRTDNEIKNYWRTHFKK  113 (259)
Q Consensus        68 ~WT~eED~~Ll~~v~~~G~---~W~~Ia~~l~gRT~~qcknrw~~~lkk  113 (259)
                      .||.|||+.||..+.+-|.   .|..||+.| +||++||++||..+++-
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L   63 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL   63 (70)
Confidence            5999999999999999997   699999999 99999999999988764

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=98.00  E-value=1.2e-06  Score=64.33  Aligned_cols=42  Identities=21%  Similarity=0.365  Sum_probs=38.2

Q ss_pred             CCCCCHHhHHHHHHHHHHcCC----CHHHHHhhCCCCCHHHHHHHH
Q 047854           66 RGQLTPQEEGIIIELHALWGN----KWSTIARYLPGRTDNEIKNYW  107 (259)
Q Consensus        66 k~~WT~eED~~Ll~~v~~~G~----~W~~Ia~~l~gRT~~qcknrw  107 (259)
                      ..+||.+|+++|..++..|+.    +|.+||..+||||..+|+.+|
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY   65 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHY   65 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGG
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHH
Confidence            458999999999999999985    699999999999999999988

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.87  E-value=3.2e-06  Score=64.83  Aligned_cols=46  Identities=17%  Similarity=0.239  Sum_probs=42.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChhhhhhhcc----cCCCccccchhhhhhc
Q 047854           14 GPWTPEEDKLLTEHVNLLGEGRWSSVARSAG----LNRSGKSCRLRWVNYL   60 (259)
Q Consensus        14 g~WT~EED~~L~~lV~~~g~~~W~~IA~~l~----~gRt~~Qcr~Rw~~~L   60 (259)
                      .+||.||+..|.+++..|+. +|..|+..+.    .+||..++++||..+.
T Consensus        31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~   80 (93)
T 3hm5_A           31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence            89999999999999999999 9999999983    2799999999998654

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.87  E-value=2.7e-05  Score=56.53  Aligned_cols=43  Identities=19%  Similarity=0.385  Sum_probs=40.4

Q ss_pred             CCCCCHHhHHHHHHHHHHcCCCHHHHHh-hCCCCCHHHHHHHHH
Q 047854           66 RGQLTPQEEGIIIELHALWGNKWSTIAR-YLPGRTDNEIKNYWR  108 (259)
Q Consensus        66 k~~WT~eED~~Ll~~v~~~G~~W~~Ia~-~l~gRT~~qcknrw~  108 (259)
                      ..+||++|..+..+++.+||.+|..|++ .+++||..+|...|.
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY   51 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY   51 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence            4589999999999999999999999999 589999999999886

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.82  E-value=3.1e-05  Score=59.28  Aligned_cols=44  Identities=20%  Similarity=0.200  Sum_probs=41.1

Q ss_pred             CCCCCHHhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHH
Q 047854           66 RGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRT  109 (259)
Q Consensus        66 k~~WT~eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~  109 (259)
                      ...||++|..++.+++..||.+|..|+..||+||..+|-..|..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~   86 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL   86 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence            46899999999999999999999999999999999999998853

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=97.80  E-value=4.6e-05  Score=58.28  Aligned_cols=57  Identities=16%  Similarity=0.216  Sum_probs=48.7

Q ss_pred             hhhhhhccCCCcCCCCCHHhHHHHHHHHHHcCCCHHHHHhhCC-----CCCHHHHHHHHHHhhhcc
Q 047854           54 LRWVNYLRPGLKRGQLTPQEEGIIIELHALWGNKWSTIARYLP-----GRTDNEIKNYWRTHFKKE  114 (259)
Q Consensus        54 ~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~~W~~Ia~~l~-----gRT~~qcknrw~~~lkk~  114 (259)
                      +.|..+|.    ...||.||...|++++++|+-+|..|+..+.     .||..++|.||..+.++.
T Consensus        22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l   83 (93)
T 4iej_A           22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKL   83 (93)
T ss_dssp             HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHH
Confidence            45666664    3689999999999999999999999988763     799999999999887763

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.60  E-value=3e-05  Score=74.90  Aligned_cols=46  Identities=26%  Similarity=0.474  Sum_probs=42.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhh
Q 047854           12 RKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNY   59 (259)
Q Consensus        12 rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~   59 (259)
                      ...+||.+|-+++++++.+||. +|..||+.|+ +||..||+..|.++
T Consensus       379 ~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~Vg-TKT~~Qvk~fy~~~  424 (482)
T 2xag_B          379 CNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNY  424 (482)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHS-SCCHHHHHHHHHHT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            4678999999999999999999 9999999999 99999999988753

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.59  E-value=4.1e-05  Score=55.54  Aligned_cols=45  Identities=16%  Similarity=0.188  Sum_probs=40.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChhhhhh-hcccCCCccccchhhhh
Q 047854           12 RKGPWTPEEDKLLTEHVNLLGEGRWSSVAR-SAGLNRSGKSCRLRWVN   58 (259)
Q Consensus        12 rkg~WT~EED~~L~~lV~~~g~~~W~~IA~-~l~~gRt~~Qcr~Rw~~   58 (259)
                      ...+||+||-+++.+++..||. +|..|++ .|+ +||..+|..-|..
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~   52 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYYM   52 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCCHHHHHHHHHh
Confidence            3457999999999999999999 8999999 698 9999999987763

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.48  E-value=5.8e-05  Score=57.79  Aligned_cols=43  Identities=14%  Similarity=0.268  Sum_probs=39.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhh
Q 047854           14 GPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVN   58 (259)
Q Consensus        14 g~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~   58 (259)
                      ..||+||.+++.+++..||+ +|..||..|+ +||..+|-.-|..
T Consensus        44 ~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l~-~Kt~~~cV~~YY~   86 (94)
T 4a69_C           44 NMWSEQEKETFREKFMQHPK-NFGLIASFLE-RKTVAECVLYYYL   86 (94)
T ss_dssp             CCCCHHHHHHHHHHHHHSTT-CHHHHHHTCT-TCCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCC-CHHHHHHHcC-CCCHHHHHHHHhc
Confidence            56999999999999999999 8999999999 9999999987753

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.16  E-value=0.00037  Score=52.95  Aligned_cols=51  Identities=20%  Similarity=0.354  Sum_probs=43.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCC--CChhhhhhhcccCCCccccchhhhhh
Q 047854            8 EQGWRKGPWTPEEDKLLTEHVNLLGE--GRWSSVARSAGLNRSGKSCRLRWVNY   59 (259)
Q Consensus         8 ~p~~rkg~WT~EED~~L~~lV~~~g~--~~W~~IA~~l~~gRt~~Qcr~Rw~~~   59 (259)
                      +++-+---||.|||..|+....+-|.  ..|..||+.|+ +|++.|+.+||...
T Consensus        28 s~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~L   80 (95)
T 1ug2_A           28 STGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFREL   80 (95)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred             CCCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence            34444556999999999999999876  46999999998 99999999999864

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.13  E-value=0.0001  Score=54.90  Aligned_cols=49  Identities=24%  Similarity=0.554  Sum_probs=39.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC---------CChhhhhhhc---ccCCCccccchhhhhhc
Q 047854           12 RKGPWTPEEDKLLTEHVNLLGE---------GRWSSVARSA---GLNRSGKSCRLRWVNYL   60 (259)
Q Consensus        12 rkg~WT~EED~~L~~lV~~~g~---------~~W~~IA~~l---~~gRt~~Qcr~Rw~~~L   60 (259)
                      |...||.+|-..|+.+......         ..|..||..|   +..||+.||+.+|.++.
T Consensus         3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~   63 (86)
T 2ebi_A            3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL   63 (86)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            5678999999999999876321         1599999976   35799999999998754

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=97.08  E-value=0.002  Score=60.46  Aligned_cols=99  Identities=15%  Similarity=0.218  Sum_probs=76.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhh----------------------------------
Q 047854           14 GPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNY----------------------------------   59 (259)
Q Consensus        14 g~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~----------------------------------   59 (259)
                      +.||.-+=..++.++.+||..+-..||..|.+++|...++. |..+                                  
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~-Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~  202 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRA-YAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA  202 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHH-HHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHH-HHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56999999999999999999999999999954688865552 1111                                  


Q ss_pred             --------------c----cCC-CcCCCCCHHhHHHHHHHHHHcCC----CHHHHHhh------------CCCCCHHHHH
Q 047854           60 --------------L----RPG-LKRGQLTPQEEGIIIELHALWGN----KWSTIARY------------LPGRTDNEIK  104 (259)
Q Consensus        60 --------------L----~p~-l~k~~WT~eED~~Ll~~v~~~G~----~W~~Ia~~------------l~gRT~~qck  104 (259)
                                    |    .++ .+...||++||..||-++.+||-    .|..|-..            |..||+..|.
T Consensus       203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~  282 (374)
T 2y9y_A          203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA  282 (374)
T ss_dssp             HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred             HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence                          1    111 13457999999999999999994    49999332            3569999999


Q ss_pred             HHHHHhhhc
Q 047854          105 NYWRTHFKK  113 (259)
Q Consensus       105 nrw~~~lkk  113 (259)
                      .|...+++-
T Consensus       283 rRc~tLi~~  291 (374)
T 2y9y_A          283 RRGNTLLQC  291 (374)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999888874

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.05  E-value=0.00032  Score=52.23  Aligned_cols=48  Identities=17%  Similarity=0.328  Sum_probs=40.4

Q ss_pred             CCCCCHHhHHHHHHHHHHcCC----------CHHHHHhhCC----CCCHHHHHHHHHHhhhc
Q 047854           66 RGQLTPQEEGIIIELHALWGN----------KWSTIARYLP----GRTDNEIKNYWRTHFKK  113 (259)
Q Consensus        66 k~~WT~eED~~Ll~~v~~~G~----------~W~~Ia~~l~----gRT~~qcknrw~~~lkk  113 (259)
                      ...||.+|...||+++.++..          .|..||..|.    .||+.||+++|.++.+.
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~   65 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE   65 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence            467999999999999986421          3999999763    69999999999998876

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=96.96  E-value=0.0012  Score=56.51  Aligned_cols=41  Identities=15%  Similarity=0.149  Sum_probs=31.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC--CCChhhhhhh--cccCCCcccc
Q 047854           11 WRKGPWTPEEDKLLTEHVNLLG--EGRWSSVARS--AGLNRSGKSC   52 (259)
Q Consensus        11 ~rkg~WT~EED~~L~~lV~~~g--~~~W~~IA~~--l~~gRt~~Qc   52 (259)
                      -....||..|-..|+.++.+||  ..+|..|+..  |. +||...+
T Consensus         5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~-~Ks~~~v   49 (211)
T 4b4c_A            5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELV-DKSETDL   49 (211)
T ss_dssp             ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCT-TSCHHHH
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccC-CCCHHHH
Confidence            3456799999999999999999  5689999864  55 6766433

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=95.96  E-value=0.00014  Score=52.43  Aligned_cols=48  Identities=13%  Similarity=0.266  Sum_probs=41.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC--CChhhhhhhcccCCCccccchhhhhhcc
Q 047854           12 RKGPWTPEEDKLLTEHVNLLGE--GRWSSVARSAGLNRSGKSCRLRWVNYLR   61 (259)
Q Consensus        12 rkg~WT~EED~~L~~lV~~~g~--~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~   61 (259)
                      .--.||.|||..|+....+-|.  ..|..||..|  +||+.|+.+||...+.
T Consensus        13 ~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           13 IIILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK   62 (70)
Confidence            3346999999999999998876  4699999998  6999999999987553

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=96.01  E-value=0.0051  Score=46.95  Aligned_cols=48  Identities=17%  Similarity=0.237  Sum_probs=41.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcc----cCCCccccchhhhhhc
Q 047854           12 RKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAG----LNRSGKSCRLRWVNYL   60 (259)
Q Consensus        12 rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~----~gRt~~Qcr~Rw~~~L   60 (259)
                      +...||.||...|.+++..|+. +|.-|+....    ..||..+.++||..+.
T Consensus        29 ~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~   80 (93)
T 4iej_A           29 HDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             CBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence            3468999999999999999999 9999999864    2699999999998754

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=95.48  E-value=0.033  Score=39.58  Aligned_cols=49  Identities=10%  Similarity=-0.021  Sum_probs=41.4

Q ss_pred             CcCCCCCHHhHHHHHHHHHHcCCC---HHHHHhhC--CCCCHHHHHHHHHHhhh
Q 047854           64 LKRGQLTPQEEGIIIELHALWGNK---WSTIARYL--PGRTDNEIKNYWRTHFK  112 (259)
Q Consensus        64 l~k~~WT~eED~~Ll~~v~~~G~~---W~~Ia~~l--~gRT~~qcknrw~~~lk  112 (259)
                      ..+-.||+|.....++++..+|..   +..|.+.|  +|.|..+|++|...+..
T Consensus         5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~   58 (64)
T 1irz_A            5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRV   58 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence            345689999999999999999955   88998876  78999999998766543

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=93.48  E-value=0.33  Score=44.21  Aligned_cols=49  Identities=18%  Similarity=0.297  Sum_probs=44.1

Q ss_pred             CCCCCHHhHHHHHHHHHHcCC-CHHHHHhhCCCCCHHHHHHHHHHhhhcc
Q 047854           66 RGQLTPQEEGIIIELHALWGN-KWSTIARYLPGRTDNEIKNYWRTHFKKE  114 (259)
Q Consensus        66 k~~WT~eED~~Ll~~v~~~G~-~W~~Ia~~l~gRT~~qcknrw~~~lkk~  114 (259)
                      -+.||..+...++.++.+||. .|..||..++|+|...|+.++.....+-
T Consensus       110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry  159 (304)
T 1ofc_X          110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERC  159 (304)
T ss_dssp             CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred             hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhH
Confidence            457999999999999999996 5999999999999999999888777764

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=92.23  E-value=0.19  Score=42.54  Aligned_cols=49  Identities=14%  Similarity=0.201  Sum_probs=41.1

Q ss_pred             cCCCCCHHhHHHHHHHHHHcC---CCHHHHHh--hCCCCCHHHHHHHHHHhhhc
Q 047854           65 KRGQLTPQEEGIIIELHALWG---NKWSTIAR--YLPGRTDNEIKNYWRTHFKK  113 (259)
Q Consensus        65 ~k~~WT~eED~~Ll~~v~~~G---~~W~~Ia~--~l~gRT~~qcknrw~~~lkk  113 (259)
                      ....||+.|-..|+.++.+||   .+|..|+.  .|.+||...++..+..++..
T Consensus         6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~   59 (211)
T 4b4c_A            6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNG   59 (211)
T ss_dssp             --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999   57999987  47899999999987766654

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=89.84  E-value=0.21  Score=44.83  Aligned_cols=28  Identities=36%  Similarity=0.617  Sum_probs=25.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChhhhhh
Q 047854           14 GPWTPEEDKLLTEHVNLLGEGRWSSVAR   41 (259)
Q Consensus        14 g~WT~EED~~L~~lV~~~g~~~W~~IA~   41 (259)
                      -.|+.+||..|+..|.+||.++|..|..
T Consensus       169 c~W~~~dD~~LLvGIykyGyG~We~Ir~  196 (270)
T 2xb0_X          169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD  196 (270)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence            3599999999999999999999999965

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=85.90  E-value=1.1  Score=31.65  Aligned_cols=50  Identities=14%  Similarity=0.090  Sum_probs=37.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCC--Chhhhhhhccc-CCCccccchhhhh
Q 047854            9 QGWRKGPWTPEEDKLLTEHVNLLGEG--RWSSVARSAGL-NRSGKSCRLRWVN   58 (259)
Q Consensus         9 p~~rkg~WT~EED~~L~~lV~~~g~~--~W~~IA~~l~~-gRt~~Qcr~Rw~~   58 (259)
                      +.-.+-.||+|.-+.+..+|...|..  .+..|.+.|+. |.|..+++.+...
T Consensus         3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQK   55 (64)
T 1irz_A            3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQK   55 (64)
T ss_dssp             CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred             CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence            34456789999999999999999953  27889887642 5677777766443

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=83.19  E-value=2.1  Score=38.20  Aligned_cols=49  Identities=10%  Similarity=0.157  Sum_probs=44.0

Q ss_pred             CCCCCHHhHHHHHHHHHHcC---CCHHHHHh--hCCCCCHHHHHHHHHHhhhcc
Q 047854           66 RGQLTPQEEGIIIELHALWG---NKWSTIAR--YLPGRTDNEIKNYWRTHFKKE  114 (259)
Q Consensus        66 k~~WT~eED~~Ll~~v~~~G---~~W~~Ia~--~l~gRT~~qcknrw~~~lkk~  114 (259)
                      +++||+.|-+.|++++.+||   .+|..|+.  .|+.++...++.-+..++...
T Consensus         3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~c   56 (270)
T 2xb0_X            3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEAA   56 (270)
T ss_dssp             TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence            67899999999999999999   57999976  678999999999998888763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	259
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	3e-17
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	9e-09
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	2e-16
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	1e-07
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	4e-16
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	4e-15
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	6e-10
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	3e-14
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	4e-05
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	7e-14
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	3e-05
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	1e-12
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	2e-10
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	4e-12
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	8e-12
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	3e-07
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	1e-10
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	3e-10
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	1e-08
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	2e-08
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	5e-06
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	9e-08
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	1e-06
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	2e-06
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	9e-05

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.3 bits (175), Expect = 3e-17
 Identities = 25/51 (49%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 12 RKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRP 62
           KGPWT EED+ L + V   G  RWS +A+     R GK CR RW N+L P
Sbjct: 2  IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNP 51

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.2 bits (115), Expect = 9e-09
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 64  LKRGQLTPQEEGIIIELHALWG-NKWSTIARYLPGRTDNEIKNYWRTHFKKE 114
           L +G  T +E+  +I+L   +G  +WS IA++L GR   + +  W  H   E
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.0 bits (169), Expect = 2e-16
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 13 KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRP 62
          K  WT EED+ L + V   G   W  +A     NR+   C+ RW   L P
Sbjct: 1  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNP 49

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.1 bits (107), Expect = 1e-07
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 66  RGQLTPQEEGIIIELHALWG-NKWSTIARYLPGRTDNEIKNYWRTH 110
           + + T +E+  + +L    G + W  IA YLP RTD + ++ W+  
Sbjct: 1   KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKV 46

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 69.3 bits (169), Expect = 4e-16
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 9/82 (10%)

Query: 15 PWTPEEDKLLTEHVNLLGEGRWSSVARSA---GLNRSGKSCRLRWVNYLR-----PGLKR 66
          P++  E + L E V  LG GRW  V   A     +R+    + +W   +      P  +R
Sbjct: 2  PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 67 GQLTPQEE-GIIIELHALWGNK 87
          G+  PQ+    ++  HA W  +
Sbjct: 62 GEPVPQDLLDRVLAAHAYWSQQ 83

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.5 bits (162), Expect = 4e-15
 Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 6/75 (8%)

Query: 13 KGPWTPEEDKLLTEHVNLLGEGR-----WSSVARSAGLNRSGKSCRLRWVNYLRPGLKRG 67
          K  +T EED+ + + V      R     +  ++     N +G S R R+  YL   L+  
Sbjct: 1  KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYV 59

Query: 68 QLTPQEEGIIIELHA 82
              +   ++ +   
Sbjct: 60 YEVDKFGKLVRDDDG 74

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.6 bits (126), Expect = 6e-10
 Identities = 12/75 (16%), Positives = 30/75 (40%), Gaps = 6/75 (8%)

Query: 66  RGQLTPQEEGIIIELHALWGNK------WSTIARYLPGRTDNEIKNYWRTHFKKEKSSQK 119
           +   T +E+  I+++      +      +  I+ Y+P  T N I++ +R +  K      
Sbjct: 1   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVY 60

Query: 120 QEKRKALLLKQKQQQ 134
           +  +   L++     
Sbjct: 61  EVDKFGKLVRDDDGN 75

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (154), Expect = 3e-14
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 12 RKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGL-NRSGKSCRLRWVNYLRPGL 64
          +K  WT EE + +   V   GEG W++++++    NR+    + RW    R G+
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (89), Expect = 4e-05
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 65  KRGQLTPQEEGIIIELHALWGNK-WSTIARY--LPGRTDNEIKNYWRTHFKK 113
           K+ + T +E   +      +G   W+ I++      RT   IK+ WRT  + 
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRL 52

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (151), Expect = 7e-14
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 12 RKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGL-NRSGKSCRLRWVNYLR 61
          ++  W  EEDK L   V   GEG WS +       NR+    + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (89), Expect = 3e-05
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 65  KRGQLTPQEEGIIIELHALWGNK-WSTIARYLP--GRTDNEIKNYWRTHFK 112
           KR     +E+  +      +G   WS I  +     RT   +K+ WRT  K
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.7 bits (142), Expect = 1e-12
 Identities = 21/47 (44%), Positives = 31/47 (65%)

Query: 66  RGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFK 112
           +   T +E+ II + H   GN+W+ IA+ LPGRTDN IKN+W +  +
Sbjct: 1   KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 47

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.9 bits (127), Expect = 2e-10
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 13 KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLR 61
          K  WT EED+++ +    LG  RW+ +A+     R+  + +  W + +R
Sbjct: 1  KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLP-GRTDNAIKNHWNSTMR 47

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.0 bits (140), Expect = 4e-12
 Identities = 11/51 (21%), Positives = 17/51 (33%)

Query: 65  KRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEK 115
                + QE+    E        +  IA +L  +T  E   Y+    K E 
Sbjct: 16  VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKNEN 66

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (138), Expect = 8e-12
 Identities = 7/61 (11%), Positives = 30/61 (49%)

Query: 65  KRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEKSSQKQEKRK 124
              + T +E+ + ++    +G  +  I+  +  ++  ++KN++  + ++    +  ++ +
Sbjct: 4   CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEWE 63

Query: 125 A 125
           A
Sbjct: 64  A 64

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (105), Expect = 3e-07
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 13 KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLR 61
             WT EE  L  + +   G   + +++   G N+S    +  +VNY R
Sbjct: 5  NARWTTEEQLLAVQAIRKYGRD-FQAISDVIG-NKSVVQVKNFFVNYRR 51

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (129), Expect = 1e-10
 Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 13 KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQ 72
             WT EE +L  + +   G   W+ +++  G +R+    +     Y +  +K G     
Sbjct: 2  SVKWTIEEKELFEQGLAKFGRR-WTKISKLIG-SRTVLQVKSYARQYFKNKVKCGLDKET 59

Query: 73 EE 74
            
Sbjct: 60 PN 61

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (127), Expect = 3e-10
 Identities = 13/55 (23%), Positives = 30/55 (54%)

Query: 70  TPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEKSSQKQEKRK 124
           T +E+ +  +  A +G +W+ I++ +  RT  ++K+Y R +FK +      ++  
Sbjct: 6   TIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETP 60

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (113), Expect = 1e-08
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 16 WTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNY 59
          WT +E+  L E V   G G W  VA      ++ + C   ++ Y
Sbjct: 4  WTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY 46

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (113), Expect = 2e-08
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 12 RKGPWTPEEDKLLTEHVNLLGE---GRWSSVARSAGLNRSGKSCRLRW 56
           + PWT  + KLL   +          W  +AR    ++S + C  R+
Sbjct: 11 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARY 57

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (96), Expect = 5e-06
 Identities = 7/52 (13%), Positives = 19/52 (36%), Gaps = 4/52 (7%)

Query: 61  RPGLKRGQLTPQEEGIIIELHALWG----NKWSTIARYLPGRTDNEIKNYWR 108
           R        T  ++ ++      +     + W  IAR +P ++  +    ++
Sbjct: 7   RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYK 58

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 45.7 bits (108), Expect = 9e-08
 Identities = 10/50 (20%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 15 PWTPEEDKLLTEHVNLLGEG---RWSSVARSAGLNRSGKSCRLRWVNYLR 61
          PW+ +E+K     + +  +    RW++VAR+    R+ +  +  +   + 
Sbjct: 3  PWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILVE 51

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 42.6 bits (100), Expect = 1e-06
 Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 70  TPQEEGIIIELHALWG----NKWSTIARYLPGRTDNEIKNYWRTHFKKEK 115
           + +E        A++     ++W+ +AR + GRT  E+K ++    +  K
Sbjct: 5   SAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIK 54

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.0 bits (101), Expect = 2e-06
 Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 46  NRSGKSCRLRWVNYLRPGLKRGQLTPQEEGIIIELHALWGNK---WSTIARYLPGRTDNE 102
             S  +           G K    T + + +I+ +    G +   +S I++ L  +T  E
Sbjct: 13  KASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVE 72

Query: 103 IKNYWRT 109
           + + +R 
Sbjct: 73  VSHRFRE 79

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.4 bits (89), Expect = 9e-05
 Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 10 GWRKGPWTPEEDKLLTEHVNLLG--EGRWSSVARSAGLNRSGKSCRLRW 56
          G +   WT E D+++       G     +S +++  G N++      R+
Sbjct: 30 GEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRF 77

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	259
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.75
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.75
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.7
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.68
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.65
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.6
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.58
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.56
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.53
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.51
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.49
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.49
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.49
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.48
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.43
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.41
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.4
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.39
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.36
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.32
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.31
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.28
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.22
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.2
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.17
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.08
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.03
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.95
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.3
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.13
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.12
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.0
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	97.34
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	97.25
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	97.25
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	97.03
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	96.04
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	95.93
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	95.18
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	94.66
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	90.19
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	90.01
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	86.19

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=9.2e-21  Score=142.61  Aligned_cols=71  Identities=20%  Similarity=0.227  Sum_probs=65.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC-----ChhhhhhhcccCCCccccchhhhhhccCCCcCCCCCHHhHHHHHHHHHHc
Q 047854           13 KGPWTPEEDKLLTEHVNLLGEG-----RWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQEEGIIIELHALW   84 (259)
Q Consensus        13 kg~WT~EED~~L~~lV~~~g~~-----~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~   84 (259)
                      |++||+|||++|+++|..||..     +|..||..|| |||++|||+||.++|+|.+++++||++||.+|+.+...+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lp-gRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~l   76 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL   76 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcC-CCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhcc
Confidence            6899999999999999999874     3999999999 999999999999999999999999999999987765443

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=3e-19  Score=122.21  Aligned_cols=52  Identities=48%  Similarity=0.855  Sum_probs=49.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCC
Q 047854           11 WRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPG   63 (259)
Q Consensus        11 ~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~   63 (259)
                      ++||+||+|||++|+++|..||.++|..||+.|+ +||+.||++||.++|+|.
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            5799999999999999999999889999999999 999999999999999984

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=3.7e-18  Score=115.67  Aligned_cols=50  Identities=36%  Similarity=0.665  Sum_probs=47.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCC
Q 047854           13 KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPG   63 (259)
Q Consensus        13 kg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~   63 (259)
                      |++||+|||++|+++|..||.++|..||..|+ |||+.||++||.++|+|.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            68999999999999999999889999999998 999999999999999984

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=1.8e-17  Score=111.01  Aligned_cols=47  Identities=45%  Similarity=0.856  Sum_probs=45.1

Q ss_pred             CCCCCHHhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhhh
Q 047854           66 RGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFK  112 (259)
Q Consensus        66 k~~WT~eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~lk  112 (259)
                      +++||+|||.+|+++|.+||++|+.||++|||||+++||+||+.+++
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999999999999998875

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=7.8e-17  Score=110.00  Aligned_cols=50  Identities=32%  Similarity=0.686  Sum_probs=47.4

Q ss_pred             CcCCCCCHHhHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHhhhc
Q 047854           64 LKRGQLTPQEEGIIIELHALWG-NKWSTIARYLPGRTDNEIKNYWRTHFKK  113 (259)
Q Consensus        64 l~k~~WT~eED~~Ll~~v~~~G-~~W~~Ia~~l~gRT~~qcknrw~~~lkk  113 (259)
                      +.+|+||+|||.+|+++|.+|| .+|+.||+.|++||+.||++||+++|++
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P   51 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            4789999999999999999999 5799999999999999999999999876

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.60  E-value=1.7e-16  Score=118.09  Aligned_cols=73  Identities=29%  Similarity=0.540  Sum_probs=60.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChhhhhhh----cccCCCccccchhhhhhc-----cCCCcCCCCCHHhHHHHHHHHHHc
Q 047854           14 GPWTPEEDKLLTEHVNLLGEGRWSSVARS----AGLNRSGKSCRLRWVNYL-----RPGLKRGQLTPQEEGIIIELHALW   84 (259)
Q Consensus        14 g~WT~EED~~L~~lV~~~g~~~W~~IA~~----l~~gRt~~Qcr~Rw~~~L-----~p~l~k~~WT~eED~~Ll~~v~~~   84 (259)
                      .+||+|||+.|+.+|.+||.++|..|++.    ++ +||+.||++||.++|     .|..+++.|+++|   |+..|.++
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~-~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e---ll~~v~~~   76 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD---LLDRVLAA   76 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH---HHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhcc-CCCHHHHHHHHHHHhhhhccCcccccCCCCCHH---HHHHHHHH
Confidence            37999999999999999999899999985    45 899999999999998     4677888999877   45555555


Q ss_pred             CCCHHH
Q 047854           85 GNKWST   90 (259)
Q Consensus        85 G~~W~~   90 (259)
                      +.+|++
T Consensus        77 ~~~wsq   82 (83)
T d2ckxa1          77 HAYWSQ   82 (83)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            556753

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=1.2e-15  Score=103.13  Aligned_cols=48  Identities=29%  Similarity=0.592  Sum_probs=45.5

Q ss_pred             CCCCCHHhHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHhhhc
Q 047854           66 RGQLTPQEEGIIIELHALWG-NKWSTIARYLPGRTDNEIKNYWRTHFKK  113 (259)
Q Consensus        66 k~~WT~eED~~Ll~~v~~~G-~~W~~Ia~~l~gRT~~qcknrw~~~lkk  113 (259)
                      +++||++||.+|+++|.+|| ++|..||.+|+|||+.||++||.++|.+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   49 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   49 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            57899999999999999999 5799999999999999999999999876

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=6.5e-16  Score=106.44  Aligned_cols=53  Identities=30%  Similarity=0.619  Sum_probs=48.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChhhhhhh--cccCCCccccchhhhhhccCCCc
Q 047854           12 RKGPWTPEEDKLLTEHVNLLGEGRWSSVARS--AGLNRSGKSCRLRWVNYLRPGLK   65 (259)
Q Consensus        12 rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~--l~~gRt~~Qcr~Rw~~~L~p~l~   65 (259)
                      ++++||+|||++|+++|.+||.++|..||+.  ++ +||+.||++||.++++|.++
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~-~Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFV-NRTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCS-SCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCC-CcCHHHHHHHHHHHhcCCCC
Confidence            5789999999999999999998899999987  55 89999999999999988763

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=1.8e-15  Score=101.14  Aligned_cols=46  Identities=28%  Similarity=0.661  Sum_probs=44.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhc
Q 047854           13 KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYL   60 (259)
Q Consensus        13 kg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L   60 (259)
                      |++||+|||++|+++|..||. +|..||..|| |||+.||+.||.++|
T Consensus         1 K~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-gRt~~~~knr~~~~l   46 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLP-GRTDNAIKNHWNSTM   46 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCT-TCCHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHhh-HHHHHHhHcC-CCCHHHHHHHHHHHc
Confidence            679999999999999999999 8999999999 999999999999876

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=2e-15  Score=113.08  Aligned_cols=63  Identities=19%  Similarity=0.368  Sum_probs=56.7

Q ss_pred             CCCCCHHhHHHHHHHHHHcCCC------HHHHHhhCCCCCHHHHHHHHHHhhhccccchhhhHHHHHHH
Q 047854           66 RGQLTPQEEGIIIELHALWGNK------WSTIARYLPGRTDNEIKNYWRTHFKKEKSSQKQEKRKALLL  128 (259)
Q Consensus        66 k~~WT~eED~~Ll~~v~~~G~~------W~~Ia~~l~gRT~~qcknrw~~~lkk~~~~~~~~k~e~~~l  128 (259)
                      +++||+|||++|+++|.+||.+      |+.||++|||||++||++||+++|.+......|+.+++.++
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll   69 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLV   69 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBC
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCCCCchhHHH
Confidence            5799999999999999999975      99999999999999999999999999988888877665433

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.2e-14  Score=98.64  Aligned_cols=51  Identities=25%  Similarity=0.406  Sum_probs=46.1

Q ss_pred             cCCCCCHHhHHHHHHHHHHcC-CCHHHHHhh--CCCCCHHHHHHHHHHhhhccc
Q 047854           65 KRGQLTPQEEGIIIELHALWG-NKWSTIARY--LPGRTDNEIKNYWRTHFKKEK  115 (259)
Q Consensus        65 ~k~~WT~eED~~Ll~~v~~~G-~~W~~Ia~~--l~gRT~~qcknrw~~~lkk~~  115 (259)
                      ++.+||+|||++|+++|.+|| ++|+.|++.  |++||+.||++||++++++..
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~   54 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   54 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCC
Confidence            467999999999999999999 579999997  569999999999999988753

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=6.2e-15  Score=100.34  Aligned_cols=49  Identities=33%  Similarity=0.513  Sum_probs=44.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcc-cCCCccccchhhhhhc
Q 047854           12 RKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAG-LNRSGKSCRLRWVNYL   60 (259)
Q Consensus        12 rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~-~gRt~~Qcr~Rw~~~L   60 (259)
                      ++++||+|||+.|+++|.+||.++|..||+.++ .+||+.||++||.++.
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~   50 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK   50 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHH
Confidence            588999999999999999999989999998753 3899999999999864

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=5.5e-15  Score=98.62  Aligned_cols=44  Identities=30%  Similarity=0.620  Sum_probs=42.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhh
Q 047854           15 PWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNY   59 (259)
Q Consensus        15 ~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~   59 (259)
                      .||+|||.+|+++|..||.++|..||..|+ +||+.||+.||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~-~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            499999999999999999989999999999 99999999999876

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.7e-14  Score=97.10  Aligned_cols=48  Identities=29%  Similarity=0.362  Sum_probs=43.6

Q ss_pred             cCCCCCHHhHHHHHHHHHHcCC-CHHHHHhhC--CCCCHHHHHHHHHHhhh
Q 047854           65 KRGQLTPQEEGIIIELHALWGN-KWSTIARYL--PGRTDNEIKNYWRTHFK  112 (259)
Q Consensus        65 ~k~~WT~eED~~Ll~~v~~~G~-~W~~Ia~~l--~gRT~~qcknrw~~~lk  112 (259)
                      ++++||+|||+.|+++|.+||. +|+.|++.+  .+||+.||++||+++.|
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            4789999999999999999995 899999975  49999999999998764

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=6.1e-14  Score=99.01  Aligned_cols=51  Identities=25%  Similarity=0.430  Sum_probs=47.1

Q ss_pred             CCCCCHHhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhhhcccc
Q 047854           66 RGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEKS  116 (259)
Q Consensus        66 k~~WT~eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~lkk~~~  116 (259)
                      ...||+|||.+|++++..||.+|..||.+||+||+.||++||..++++...
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k   52 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVK   52 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Confidence            357999999999999999999999999999999999999999999887544

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.2e-13  Score=92.07  Aligned_cols=44  Identities=25%  Similarity=0.375  Sum_probs=41.2

Q ss_pred             CCCHHhHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHhh
Q 047854           68 QLTPQEEGIIIELHALWG-NKWSTIARYLPGRTDNEIKNYWRTHF  111 (259)
Q Consensus        68 ~WT~eED~~Ll~~v~~~G-~~W~~Ia~~l~gRT~~qcknrw~~~l  111 (259)
                      .||.+||.+|+++|.+|| ++|..||++|++||+.||+.||.+++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~f   47 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYF   47 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHhC
Confidence            499999999999999999 57999999999999999999998764

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.8e-14  Score=100.75  Aligned_cols=59  Identities=22%  Similarity=0.420  Sum_probs=52.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCCCcCCCCCHHh
Q 047854           13 KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQE   73 (259)
Q Consensus        13 kg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l~k~~WT~eE   73 (259)
                      ..+||+|||++|+++|..||. +|..||..|+ +||+.||+.||.+++.+..+.+.+...+
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~ry~~~~~~~~k~~~~~~~~   60 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKCGLDKETP   60 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCSCTTCCCS
T ss_pred             CCCCCHHHHHHHHHHHHHhcc-hHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence            357999999999999999997 9999999999 9999999999999998877777665543

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.2e-13  Score=96.34  Aligned_cols=51  Identities=25%  Similarity=0.503  Sum_probs=46.7

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCC---ChhhhhhhcccCCCccccchhhhh
Q 047854            7 TEQGWRKGPWTPEEDKLLTEHVNLLGEG---RWSSVARSAGLNRSGKSCRLRWVN   58 (259)
Q Consensus         7 l~p~~rkg~WT~EED~~L~~lV~~~g~~---~W~~IA~~l~~gRt~~Qcr~Rw~~   58 (259)
                      ..+...+++||+|||++|+++|..||.+   +|..||..|| |||+.||+.||..
T Consensus         6 ~~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~-~Rt~~qc~~R~~~   59 (60)
T d2cqra1           6 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKL   59 (60)
T ss_dssp             CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHH
T ss_pred             ccCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            4577888999999999999999999985   4999999999 9999999999974

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=6.2e-13  Score=92.58  Aligned_cols=50  Identities=14%  Similarity=0.285  Sum_probs=45.2

Q ss_pred             cCCCcCCCCCHHhHHHHHHHHHHcCC----CHHHHHhhCCCCCHHHHHHHHHHh
Q 047854           61 RPGLKRGQLTPQEEGIIIELHALWGN----KWSTIARYLPGRTDNEIKNYWRTH  110 (259)
Q Consensus        61 ~p~l~k~~WT~eED~~Ll~~v~~~G~----~W~~Ia~~l~gRT~~qcknrw~~~  110 (259)
                      .+...+++||+|||.+|++++.+||.    +|..||.+|||||+.||+.||+.+
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            44567889999999999999999996    499999999999999999999764

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=1e-12  Score=99.31  Aligned_cols=72  Identities=17%  Similarity=0.173  Sum_probs=64.2

Q ss_pred             hhcccCCCccccchhhhhhccCCCcCCCCCHHhHHHHHHHHHHcCCC---HHHHHhhCCCCCHHHHHHHHHHhhhc
Q 047854           41 RSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQEEGIIIELHALWGNK---WSTIARYLPGRTDNEIKNYWRTHFKK  113 (259)
Q Consensus        41 ~~l~~gRt~~Qcr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~~---W~~Ia~~l~gRT~~qcknrw~~~lkk  113 (259)
                      ..+| ..+..+++-++.+..++......||.|||++||+.++++|.+   |..||+.|+|||++||++||..+++.
T Consensus         9 ~~~p-~~t~~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~l   83 (95)
T d1ug2a_           9 GALP-KASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL   83 (95)
T ss_dssp             CCCC-CCCCCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred             ccCC-CCCccccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            3455 678888888888878888888899999999999999999987   99999999999999999999988875

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.31  E-value=1.4e-12  Score=91.65  Aligned_cols=46  Identities=22%  Similarity=0.437  Sum_probs=42.2

Q ss_pred             CCCCHHhHHHHHHHHHHcCCC----HHHHHhhCCCCCHHHHHHHHHHhhh
Q 047854           67 GQLTPQEEGIIIELHALWGNK----WSTIARYLPGRTDNEIKNYWRTHFK  112 (259)
Q Consensus        67 ~~WT~eED~~Ll~~v~~~G~~----W~~Ia~~l~gRT~~qcknrw~~~lk  112 (259)
                      .+||+|||.+|++++..||..    |..||.+|||||+.||++||+.++.
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~   51 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVE   51 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            479999999999999999963    9999999999999999999977654

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.28  E-value=7e-13  Score=93.23  Aligned_cols=44  Identities=20%  Similarity=0.544  Sum_probs=40.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC---hhhhhhhcccCCCccccchhhhh
Q 047854           14 GPWTPEEDKLLTEHVNLLGEGR---WSSVARSAGLNRSGKSCRLRWVN   58 (259)
Q Consensus        14 g~WT~EED~~L~~lV~~~g~~~---W~~IA~~l~~gRt~~Qcr~Rw~~   58 (259)
                      .+||+|||++|+++|..||.+.   |.+||..|+ |||+.||+.||..
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~-gRt~~qc~~r~~~   48 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEI   48 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            4799999999999999999853   999999999 9999999999964

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.22  E-value=1.4e-11  Score=91.03  Aligned_cols=46  Identities=20%  Similarity=0.393  Sum_probs=42.8

Q ss_pred             CCCHHhHHHHHHHHHHcCC-CHHHHHhh----CCCCCHHHHHHHHHHhhhc
Q 047854           68 QLTPQEEGIIIELHALWGN-KWSTIARY----LPGRTDNEIKNYWRTHFKK  113 (259)
Q Consensus        68 ~WT~eED~~Ll~~v~~~G~-~W~~Ia~~----l~gRT~~qcknrw~~~lkk  113 (259)
                      +||.|||+.|+++|.+||. +|+.|++.    +++||+.||++||+++++.
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~   52 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT   52 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhh
Confidence            7999999999999999995 89999985    6899999999999999974

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=9.1e-12  Score=87.76  Aligned_cols=48  Identities=13%  Similarity=0.326  Sum_probs=44.8

Q ss_pred             CCCCCHHhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhhhc
Q 047854           66 RGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKK  113 (259)
Q Consensus        66 k~~WT~eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~lkk  113 (259)
                      ..+||++||.+|++++..||.+|..||.+|+|||..+|+++|..+.++
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k~   52 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR   52 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence            467999999999999999999999999999999999999999887654

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1e-11  Score=88.30  Aligned_cols=49  Identities=20%  Similarity=0.154  Sum_probs=44.4

Q ss_pred             CcCCCCCHHhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhhh
Q 047854           64 LKRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFK  112 (259)
Q Consensus        64 l~k~~WT~eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~lk  112 (259)
                      ....+||+||+.+|++++.+||.+|..||.+|||||..||+++|....+
T Consensus        15 ~~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~kk   63 (68)
T d1xc5a1          15 QVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKK   63 (68)
T ss_dssp             TTTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHHTT
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHHHC
Confidence            3456899999999999999999999999999999999999999975443

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.7e-11  Score=85.29  Aligned_cols=46  Identities=26%  Similarity=0.474  Sum_probs=42.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhc
Q 047854           13 KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYL   60 (259)
Q Consensus        13 kg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L   60 (259)
                      +.+||++||++|.+++..||. +|..||..|+ |||..||+.+|.++.
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~-~w~~Ia~~~~-~kt~~q~~~~y~~~~   50 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYR   50 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHS-SCCHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCc-hHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            357999999999999999998 8999999999 999999999998764

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=4.1e-11  Score=85.07  Aligned_cols=50  Identities=12%  Similarity=0.185  Sum_probs=44.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhh
Q 047854            8 EQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNY   59 (259)
Q Consensus         8 ~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~   59 (259)
                      .+.-...+||+|||++|+.+|..||. +|..||..|| +||..||+.+|...
T Consensus        12 ~~~~~~~~WT~eE~~~f~~~~~~~G~-~w~~Ia~~~~-~rt~~q~~~~yy~~   61 (68)
T d1xc5a1          12 KDRQVMNMWSEQEKETFREKFMQHPK-NFGLIASFLE-RKTVAECVLYYYLT   61 (68)
T ss_dssp             TSTTTTTCCCTTTHHHHHHHHHHTTS-CSSSHHHHTT-TSCHHHHHHHHHHH
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHHCC-cHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            34445578999999999999999998 8999999999 99999999999754

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.95  E-value=2.5e-10  Score=86.00  Aligned_cols=56  Identities=18%  Similarity=0.351  Sum_probs=49.1

Q ss_pred             ccCCCCCCCCCCCCHHHHHHHHHHHHHhCCC--ChhhhhhhcccCCCccccchhhhhhc
Q 047854            4 GATTEQGWRKGPWTPEEDKLLTEHVNLLGEG--RWSSVARSAGLNRSGKSCRLRWVNYL   60 (259)
Q Consensus         4 ~~~l~p~~rkg~WT~EED~~L~~lV~~~g~~--~W~~IA~~l~~gRt~~Qcr~Rw~~~L   60 (259)
                      .+..+++.+...||.|||+.|+..+.++|..  .|..||+.|+ |||+.||++||...+
T Consensus        24 ~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~-~Rs~~qvr~Rf~~Lm   81 (95)
T d1ug2a_          24 SKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRELM   81 (95)
T ss_dssp             CCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHHH
T ss_pred             CccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            3456688889999999999999999999973  2999999999 999999999998643

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.30  E-value=7e-07  Score=60.79  Aligned_cols=43  Identities=19%  Similarity=0.332  Sum_probs=39.8

Q ss_pred             CCCCHHhHHHHHHHHHHcCCCHHHHHhh-CCCCCHHHHHHHHHH
Q 047854           67 GQLTPQEEGIIIELHALWGNKWSTIARY-LPGRTDNEIKNYWRT  109 (259)
Q Consensus        67 ~~WT~eED~~Ll~~v~~~G~~W~~Ia~~-l~gRT~~qcknrw~~  109 (259)
                      ..||+||..++.+++..||.+|..|++. +|+||..+|.+.|..
T Consensus         2 d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~   45 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHH
Confidence            4799999999999999999999999985 699999999999864

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=1.7e-06  Score=59.35  Aligned_cols=45  Identities=16%  Similarity=0.266  Sum_probs=40.5

Q ss_pred             CCCCHHhHHHHHHHHHHcC----CCHHHHHhhCCCCCHHHHHHHHHHhhh
Q 047854           67 GQLTPQEEGIIIELHALWG----NKWSTIARYLPGRTDNEIKNYWRTHFK  112 (259)
Q Consensus        67 ~~WT~eED~~Ll~~v~~~G----~~W~~Ia~~l~gRT~~qcknrw~~~lk  112 (259)
                      ..||.+|+.+|.+++.+|.    .+|..||..+ |||..+|..||+.+..
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~e   50 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKD   50 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence            4799999999999999997    3599999999 9999999999976654

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=5.9e-07  Score=61.75  Aligned_cols=45  Identities=24%  Similarity=0.361  Sum_probs=40.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCC---CChhhhhhhcccCCCccccchhhhhhc
Q 047854           14 GPWTPEEDKLLTEHVNLLGE---GRWSSVARSAGLNRSGKSCRLRWVNYL   60 (259)
Q Consensus        14 g~WT~EED~~L~~lV~~~g~---~~W~~IA~~l~~gRt~~Qcr~Rw~~~L   60 (259)
                      +.||++|+.+|.+++.+|..   ++|.+||..|  |||..+|..||..+-
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v--gkt~~ev~~~~k~l~   49 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH--CCCHHHHHHHHHHHH
Confidence            57999999999999999965   3699999999  699999999998543

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.00  E-value=1.8e-06  Score=58.72  Aligned_cols=43  Identities=16%  Similarity=0.278  Sum_probs=39.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChhhhhhh-cccCCCccccchhhhhh
Q 047854           15 PWTPEEDKLLTEHVNLLGEGRWSSVARS-AGLNRSGKSCRLRWVNY   59 (259)
Q Consensus        15 ~WT~EED~~L~~lV~~~g~~~W~~IA~~-l~~gRt~~Qcr~Rw~~~   59 (259)
                      .||+||-.++.+++..||. +|..|++. +| +||..||...|...
T Consensus         3 ~WT~eE~~~F~~~~~~yGK-df~~I~~~~v~-~Ks~~~~v~fYY~~   46 (57)
T d2crga1           3 EWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYYMW   46 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcc-cHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            5999999999999999999 99999985 67 99999999988643

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.34  E-value=0.00027  Score=45.20  Aligned_cols=46  Identities=20%  Similarity=0.373  Sum_probs=39.8

Q ss_pred             CCCCCHHhHHHHHHHHHHcCCCHHHHHhh--C-CCCCHHHHHHHHHHhh
Q 047854           66 RGQLTPQEEGIIIELHALWGNKWSTIARY--L-PGRTDNEIKNYWRTHF  111 (259)
Q Consensus        66 k~~WT~eED~~Ll~~v~~~G~~W~~Ia~~--l-~gRT~~qcknrw~~~l  111 (259)
                      +..||+||-.-|+..|+.+|..|..|-=.  | |||+...+..+|+.++
T Consensus         1 Rknft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~l~   49 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLI   49 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHhhC
Confidence            35699999999999999999999999443  3 8999999999997753

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.00025  Score=48.21  Aligned_cols=47  Identities=15%  Similarity=0.304  Sum_probs=40.7

Q ss_pred             CCCCCHHhHHHHHHHHHHcCC-------C--HHHHHh-hCCCCCHHHHHHHHHHhhh
Q 047854           66 RGQLTPQEEGIIIELHALWGN-------K--WSTIAR-YLPGRTDNEIKNYWRTHFK  112 (259)
Q Consensus        66 k~~WT~eED~~Ll~~v~~~G~-------~--W~~Ia~-~l~gRT~~qcknrw~~~lk  112 (259)
                      +.+||.+||+.|++.|+++..       +  |..+++ .+|.+|-...|+||.+.|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            468999999999999998742       2  999986 6799999999999988875

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.25  E-value=0.00024  Score=49.08  Aligned_cols=49  Identities=10%  Similarity=0.007  Sum_probs=40.8

Q ss_pred             cCCCCCHHhHHHHHHHHHHcCCCH---HHHHhh--CCCCCHHHHHHHHHHhhhc
Q 047854           65 KRGQLTPQEEGIIIELHALWGNKW---STIARY--LPGRTDNEIKNYWRTHFKK  113 (259)
Q Consensus        65 ~k~~WT~eED~~Ll~~v~~~G~~W---~~Ia~~--l~gRT~~qcknrw~~~lkk  113 (259)
                      .+-.||+||..++++++..+|..|   ..|...  ++++|..+|++|...+.-+
T Consensus         6 ~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~   59 (64)
T d1irza_           6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVA   59 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence            345799999999999999999887   577775  5899999999998776443

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.00016  Score=49.16  Aligned_cols=48  Identities=21%  Similarity=0.300  Sum_probs=40.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC--------Chhhhhh-hcccCCCccccchhhhhhcc
Q 047854           13 KGPWTPEEDKLLTEHVNLLGEG--------RWSSVAR-SAGLNRSGKSCRLRWVNYLR   61 (259)
Q Consensus        13 kg~WT~EED~~L~~lV~~~g~~--------~W~~IA~-~l~~gRt~~Qcr~Rw~~~L~   61 (259)
                      +-+||.|||+.|++.|..+...        -|...++ .++ .+|-.+-|+||.+.|.
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~-~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCC-CCCHHHHHHHHHHHhc
Confidence            4689999999999999998432        3999985 566 8999999999998774

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.0028  Score=43.98  Aligned_cols=48  Identities=29%  Similarity=0.530  Sum_probs=42.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC---CChhhhhhhcccCCCccccchhhhhhcc
Q 047854           13 KGPWTPEEDKLLTEHVNLLGE---GRWSSVARSAGLNRSGKSCRLRWVNYLR   61 (259)
Q Consensus        13 kg~WT~EED~~L~~lV~~~g~---~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~   61 (259)
                      .+.|+++|=++|-.++.....   +.|..||..++ .||+..|...|..-+.
T Consensus         8 d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VG-tRSaeECQ~ky~~~~~   58 (73)
T d1wgxa_           8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR   58 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred             ccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHc-cCCHHHHHHHHHhCcc
Confidence            468999999999999998755   46999999999 9999999999987654

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.93  E-value=0.0045  Score=42.39  Aligned_cols=49  Identities=14%  Similarity=0.131  Sum_probs=37.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCh--hhhhhhcc-cCCCccccchhhhhh
Q 047854           11 WRKGPWTPEEDKLLTEHVNLLGEGRW--SSVARSAG-LNRSGKSCRLRWVNY   59 (259)
Q Consensus        11 ~rkg~WT~EED~~L~~lV~~~g~~~W--~~IA~~l~-~gRt~~Qcr~Rw~~~   59 (259)
                      -.+-.||+||-++++.+|..+|.+.|  ..|...|. .++|..||+-+...|
T Consensus         5 k~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            34567999999999999999998544  56766642 278889998765543

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.18  E-value=0.038  Score=38.08  Aligned_cols=49  Identities=14%  Similarity=0.158  Sum_probs=43.3

Q ss_pred             cCCCCCHHhHHHHHHHHHHcCCC----HHHHHhhCCCCCHHHHHHHHHHhhhc
Q 047854           65 KRGQLTPQEEGIIIELHALWGNK----WSTIARYLPGRTDNEIKNYWRTHFKK  113 (259)
Q Consensus        65 ~k~~WT~eED~~Ll~~v~~~G~~----W~~Ia~~l~gRT~~qcknrw~~~lkk  113 (259)
                      .-+.|+++|=.+|-.++..+...    |+.+|-.+..||+..|..+|......
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~~   59 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCccc
Confidence            34589999999999999998754    99999999999999999999887664

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.66  E-value=0.016  Score=36.74  Aligned_cols=46  Identities=22%  Similarity=0.329  Sum_probs=38.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChhhhhhhcc--cCCCccccchhhhhh
Q 047854           13 KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAG--LNRSGKSCRLRWVNY   59 (259)
Q Consensus        13 kg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~--~gRt~~Qcr~Rw~~~   59 (259)
                      +..||.||-.-|...|+.+|. .|+.|-=.+|  +||+......+|.+.
T Consensus         1 Rknft~eEv~YL~~GVK~~G~-~WNsILWs~PF~~GR~~vdLA~Ky~~l   48 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRL   48 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcc-hhhhhhhccCCCCCchhhHHHHHHHhh
Confidence            356999999999999999999 8999976553  489988888887653

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.19  E-value=0.34  Score=36.90  Aligned_cols=35  Identities=17%  Similarity=0.262  Sum_probs=29.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCC---hhhhhhhc
Q 047854            9 QGWRKGPWTPEEDKLLTEHVNLLGEGR---WSSVARSA   43 (259)
Q Consensus         9 p~~rkg~WT~EED~~L~~lV~~~g~~~---W~~IA~~l   43 (259)
                      ++.++..+|.|||.-|+-++.+||-++   |..|-..+
T Consensus        45 ~~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~I   82 (128)
T d1ofcx2          45 GNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAI   82 (128)
T ss_dssp             TTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             cccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence            455666799999999999999999987   88887665

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.01  E-value=0.36  Score=31.22  Aligned_cols=44  Identities=20%  Similarity=0.356  Sum_probs=38.5

Q ss_pred             CCCHHhHHHHHHHHHHcCC-CHHHHHhhCCCCCHHHHHHHHHHhh
Q 047854           68 QLTPQEEGIIIELHALWGN-KWSTIARYLPGRTDNEIKNYWRTHF  111 (259)
Q Consensus        68 ~WT~eED~~Ll~~v~~~G~-~W~~Ia~~l~gRT~~qcknrw~~~l  111 (259)
                      .|+.-|=..++.+..+||. +-..||..|.|+|...|+.+.....
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~vFw   45 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFW   45 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            4889999999999999995 6999999999999999998765443

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=86.19  E-value=0.29  Score=31.66  Aligned_cols=39  Identities=10%  Similarity=0.226  Sum_probs=35.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccch
Q 047854           15 PWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRL   54 (259)
Q Consensus        15 ~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~   54 (259)
                      .|+..|=..++.+..+||..+-..||..|. ++|...++.
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~-~Kt~eEV~~   39 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIE   39 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhc-CCCHHHHHH
Confidence            499999999999999999989999999998 899887653