Citrus Sinensis ID: 047865


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------39
PQHQEFAQEAEPEVEDKANQDRKVVLPLEKCDIFAGKWVLDNVTHPLYKEDECEFLTEWVTCLRNGRPDSLYQKWRWQPTDCSLPRFDAKLLLNKLRGKRLMLVGDSIHYNQWQSLVCMVQSVIPPGKKSLRYISTQTTAFTLEVLLTILSFSDYNATLEFYWAPFLVESNADPPTMRDGKLDPVVMPESITKHGQNWKGVDYLIFNTYIWWTKYPTMKVLRGSFDEGATEYDEIDMYTVYEKTLRAWGKWVEENVNPNLTSVFFSSAAPKHVRSSDRNNVNGVKCVEETTPIFNRTTRLEVGTNQQLFAIAANVTQSMEVPVHFLNITSLSEYRKDAHTSVYGTAAGKMLLPEQISEPTTYADCLHWCLPGLPDTWNELVYARIVSGS
ccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccEEEEEccccccccccHHHHHHHHHcccEEEEEccHHHHHHHHHHHHHHHcccccccccEEEccccccEEEEcccEEEEEccccEEEEEEEEcccccccccccccccccccccccccHHHHHHHccccccEEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccc
ccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccHHccccccHccEEEEcccccccccccHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHccccccEEEEEEcccEEEEccccEEEEEEEEccEEEEEEEccEEEEEcccccccccccccEEEEHHHHHHHHHHcccccEEEEEcEEEEcccccEEEccccccccccEcccccHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccEEEEEEHHHHHHHHcccccHEcccccccccHHHHccccHccccccccccccccHHHHHHHHHHHccc
pqhqefaqeaepevedkanqdrkvvlplekcdifagkwvldnvthplykedeCEFLTEWVTClrngrpdslyqkwrwqptdcslprFDAKLLLNKLRGKRLMLVGDSIHYNQWQSLVCMVqsvippgkkslRYISTQTTAFTLEVLLTILSFSDYNATLEFywapflvesnadpptmrdgkldpvvmpesitkhgqnwkgVDYLIFNTYIWwtkyptmkvlrgsfdegateydeidMYTVYEKTLRAWGKWveenvnpnltsvffssaapkhvrssdrnnvngvkcveettpifnrttrlevgtnQQLFAIAANVtqsmevpvhFLNITSLseyrkdahtsvygtaagkmllpeqisepttyadclhwclpglpdtwnELVYARIVSGS
pqhqefaqeaepevedkanqdrKVVLPLEKCDIFAGKWVLDNVTHPLYKEDECEFLTEWVTCLRNgrpdslyqkwrwqptdcslprFDAKLLLNKLRGKRLMLVGDSIHYNQWQSLVCMVQSVIPPGKKSLRYISTQTTAFTLEVLLTILSFSDYNATLEFYWAPFLVESNADPPTMRDGKLDPVVMPESitkhgqnwkgVDYLIFNTYIWWTKYPTMKVLRGSFDegateydeiDMYTVYEKTLRAWGKWVEENVNPNLTSVFFSsaapkhvrssdrnnvngvkcveettpifnrttrlevGTNQQLFAIAANVTQSMEVPVHFLNITSLSEYRKDAHTSVYGTAAGKMLLPEQISEPTTYADCLHWCLPGLPDTWNELVYARIVSGS
PQHQEFAQEAEPEVEDKANQDRKVVLPLEKCDIFAGKWVLDNVTHPLYKEDECEFLTEWVTCLRNGRPDSLYQKWRWQPTDCSLPRFDAklllnklrgkrlmlVGDSIHYNQWQSLVCMVQSVIPPGKKSLRYISTQTTAFTLEVLLTILSFSDYNATLEFYWAPFLVESNADPPTMRDGKLDPVVMPESITKHGQNWKGVDYLIFNTYIWWTKYPTMKVLRGSFDEGATEYDEIDMYTVYEKTLRAWGKWVEENVNPNLTSVFFSSAAPKHVRSSDRNNVNGVKCVEETTPIFNRTTRLEVGTNQQLFAIAANVTQSMEVPVHFLNITSLSEYRKDAHTSVYGTAAGKMLLPEQISEPTTYADCLHWCLPGLPDTWNELVYARIVSGS
**********************KVVLPLEKCDIFAGKWVLDNVTHPLYKEDECEFLTEWVTCLRNGRPDSLYQKWRWQPTDCSLPRFDAKLLLNKLRGKRLMLVGDSIHYNQWQSLVCMVQSVIPPGKKSLRYISTQTTAFTLEVLLTILSFSDYNATLEFYWAPFLVE****************VMPESITKHGQNWKGVDYLIFNTYIWWTKYPTMKVLRGSFDEGATEYDEIDMYTVYEKTLRAWGKWVEENVNPNLTSVFFSS************NVNGVKCVEETTPIFNRTTRLEVGTNQQLFAIAANVTQSMEVPVHFLNITSLSEYRKDAHTSVYGTAAGKMLLPEQISEPTTYADCLHWCLPGLPDTWNELVYARIV***
******************************CDIFAGKWVLDNVTHPLYKEDECEFLTEWVTCLRNGRPDSLYQKWRWQPTDCSLPRFDAKLLLNKLRGKRLMLVGDSIHYNQWQSLVCMVQSVIPPGKKSLRYISTQTTAFTLEVLLTILSFSDYNATLEFYWAPFLVESNADPPTMRDGKLDPVVMPESITKHGQNWKGVDYLIFNTYIWWTKYPTMKVLRGSFDEGATEYDEIDMYTVYEKTLRAWGKWVEENVNPNLTSVFFSSAAPKHVRSSDRNNVNGVKCVEETTPIFNRTTRLEVGTNQQLFAIAANVTQSMEVPVHFLNITSLSEYRKDAHTSVYGTAAGKMLL******PTTYADCLHWCLPGLPDTWNELVYARIVS**
*******************QDRKVVLPLEKCDIFAGKWVLDNVTHPLYKEDECEFLTEWVTCLRNGRPDSLYQKWRWQPTDCSLPRFDAKLLLNKLRGKRLMLVGDSIHYNQWQSLVCMVQSVIPPGKKSLRYISTQTTAFTLEVLLTILSFSDYNATLEFYWAPFLVESNADPPTMRDGKLDPVVMPESITKHGQNWKGVDYLIFNTYIWWTKYPTMKVLRGSFDEGATEYDEIDMYTVYEKTLRAWGKWVEENVNPNLTSVFFSSA**********NNVNGVKCVEETTPIFNRTTRLEVGTNQQLFAIAANVTQSMEVPVHFLNITSLSEYRKDAHTSVYGTAAGKMLLPEQISEPTTYADCLHWCLPGLPDTWNELVYARIVSGS
****************************EKCDIFAGKWVLDNVTHPLYKEDECEFLTEWVTCLRNGRPDSLYQKWRWQPTDCSLPRFDAKLLLNKLRGKRLMLVGDSIHYNQWQSLVCMVQSVIPPGKKSLRYISTQTTAFTLEVLLTILSFSDYNATLEFYWAPFLVESNADPPTMRDGKLDPVVMPESITKHGQNWKGVDYLIFNTYIWWTKYPTMKVLRGSFDEGATEYDEIDMYTVYEKTLRAWGKWVEENVNPNLTSVFFSSAAPKHVRSSDRNNVNGVKCVEETTPIFNRTTRLEVGTNQQLFAIAANVTQSMEVPVHFLNITSLSEYRKDAHTSVYGTAAGKMLLPEQISEPTTYADCLHWCLPGLPDTWNELVYARIVSGS
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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PQHQEFAQEAEPEVEDKANQDRKVVLPLEKCDIFAGKWVLDNVTHPLYKEDECEFLTEWVTCLRNGRPDSLYQKWRWQPTDCSLPRFDAKLLLNKLRGKRLMLVGDSIHYNQWQSLVCMVQSVIPPGKKSLRYISTQTTAFTLEVLLTILSFSDYNATLEFYWAPFLVESNADPPTMRDGKLDPVVMPESITKHGQNWKGVDYLIFNTYIWWTKYPTMKVLRGSFDEGATEYDEIDMYTVYEKTLRAWGKWVEENVNPNLTSVFFSSAAPKHVRSSDRNNVNGVKCVEETTPIFNRTTRLEVGTNQQLFAIAANVTQSMEVPVHFLNITSLSEYRKDAHTSVYGTAAGKMLLPEQISEPTTYADCLHWCLPGLPDTWNELVYARIVSGS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query389
224112475370 predicted protein [Populus trichocarpa] 0.943 0.991 0.693 1e-150
255574794436 conserved hypothetical protein [Ricinus 0.974 0.869 0.646 1e-145
449441298 497 PREDICTED: uncharacterized protein LOC10 0.912 0.714 0.655 1e-145
18405285427 uncharacterized protein [Arabidopsis tha 0.964 0.878 0.610 1e-145
334184842441 uncharacterized protein [Arabidopsis tha 0.951 0.839 0.615 1e-145
297823935427 hypothetical protein ARALYDRAFT_483062 [ 0.971 0.885 0.603 1e-144
225448469 492 PREDICTED: uncharacterized protein LOC10 0.907 0.717 0.645 1e-142
255574790469 conserved hypothetical protein [Ricinus 0.925 0.767 0.628 1e-142
297736593397 unnamed protein product [Vitis vinifera] 0.907 0.889 0.645 1e-142
356569294473 PREDICTED: uncharacterized protein LOC10 0.907 0.746 0.638 1e-140
>gi|224112475|ref|XP_002316203.1| predicted protein [Populus trichocarpa] gi|222865243|gb|EEF02374.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 262/378 (69%), Positives = 304/378 (80%), Gaps = 11/378 (2%)

Query: 12  PEVEDKANQDRKVVLPLEKCDIFAGKWVLDNVTHPLYKEDECEFLTEWVTCLRNGRPDSL 71
           P VE K + D K+ L  E+CDIF G WVLDN THPLYKED CEFL+EWV CLRNGR DSL
Sbjct: 4   PAVE-KEDADEKIALQPEECDIFTGHWVLDNKTHPLYKEDGCEFLSEWVRCLRNGRRDSL 62

Query: 72  YQKWRWQPTDCSLPRFDAKLLLNKLRGKRLMLVGDSIHYNQWQSLVCMVQSVIPPGKKSL 131
           YQ WRWQP DCSLP+F+ KLLL KL+GKRLM VGDSIH+NQWQSL+C+VQS IPPGKKSL
Sbjct: 63  YQNWRWQPRDCSLPKFEPKLLLEKLKGKRLMFVGDSIHFNQWQSLICLVQSAIPPGKKSL 122

Query: 132 RYISTQTTAFTLEVLLTILSFSDYNATLEFYWAPFLVESNADPPTMRDGKLDPVVMPESI 191
            Y S           +T+    DYNATLEFYWAPFLVESN+DPPTMRDGK D ++MPESI
Sbjct: 123 DYAS----------YITVFKIEDYNATLEFYWAPFLVESNSDPPTMRDGKSDAIIMPESI 172

Query: 192 TKHGQNWKGVDYLIFNTYIWWTKYPTMKVLRGSFDEGATEYDEIDMYTVYEKTLRAWGKW 251
           +KHG+NWK VDYLIFNTY WW KYPTMKVLRGSFDEG  EYDEI+ +  YE+ LR W KW
Sbjct: 173 SKHGRNWKDVDYLIFNTYNWWLKYPTMKVLRGSFDEGTAEYDEIERHIAYERVLRTWAKW 232

Query: 252 VEENVNPNLTSVFFSSAAPKHVRSSDRNNVNGVKCVEETTPIFNRTTRLEVGTNQQLFAI 311
           VEENV+P  TS+F+SS  P+H RSSD N+ +G+ C +ET PI NRTT ++V T++Q+FAI
Sbjct: 233 VEENVDPTRTSIFYSSLFPQHFRSSDWNSPDGINCAKETMPILNRTTPVDVSTDRQVFAI 292

Query: 312 AANVTQSMEVPVHFLNITSLSEYRKDAHTSVYGTAAGKMLLPEQISEPTTYADCLHWCLP 371
           AANVT+SM+VPVHFLN+T+LSEYRKDAHTSVY    GK+L  EQ S P  YADCLHWCLP
Sbjct: 293 AANVTRSMKVPVHFLNVTTLSEYRKDAHTSVYTARDGKLLSLEQRSNPGVYADCLHWCLP 352

Query: 372 GLPDTWNELVYARIVSGS 389
           G+PDTWNEL+YARI++ S
Sbjct: 353 GVPDTWNELLYARIIALS 370




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574794|ref|XP_002528304.1| conserved hypothetical protein [Ricinus communis] gi|223532259|gb|EEF34062.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449441298|ref|XP_004138419.1| PREDICTED: uncharacterized protein LOC101203137 [Cucumis sativus] Back     alignment and taxonomy information
>gi|18405285|ref|NP_565924.1| uncharacterized protein [Arabidopsis thaliana] gi|15983771|gb|AAL10482.1| At2g40160/T7M7.25 [Arabidopsis thaliana] gi|21360563|gb|AAM47478.1| At2g40160/T7M7.25 [Arabidopsis thaliana] gi|330254696|gb|AEC09790.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334184842|ref|NP_001189720.1| uncharacterized protein [Arabidopsis thaliana] gi|330254697|gb|AEC09791.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297823935|ref|XP_002879850.1| hypothetical protein ARALYDRAFT_483062 [Arabidopsis lyrata subsp. lyrata] gi|297325689|gb|EFH56109.1| hypothetical protein ARALYDRAFT_483062 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|225448469|ref|XP_002269697.1| PREDICTED: uncharacterized protein LOC100243314 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255574790|ref|XP_002528302.1| conserved hypothetical protein [Ricinus communis] gi|223532257|gb|EEF34060.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|297736593|emb|CBI25464.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356569294|ref|XP_003552838.1| PREDICTED: uncharacterized protein LOC100785597 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query389
TAIR|locus:2082078487 ESK1 "ESKIMO 1" [Arabidopsis t 0.971 0.776 0.568 1.3e-123
TAIR|locus:2065069424 TBL28 "TRICHOME BIREFRINGENCE- 0.907 0.832 0.575 6.9e-118
TAIR|locus:2179172434 TBL3 "TRICHOME BIREFRINGENCE-L 0.886 0.794 0.417 2.8e-82
TAIR|locus:2063125425 TBL33 "AT2G40320" [Arabidopsis 0.884 0.809 0.406 6.3e-76
TAIR|locus:2057145410 TBL34 "AT2G38320" [Arabidopsis 0.886 0.841 0.394 3.1e-74
TAIR|locus:2088659556 TBL1 "AT3G12060" [Arabidopsis 0.930 0.651 0.365 8.5e-65
TAIR|locus:2080280379 TBL36 "AT3G54260" [Arabidopsis 0.429 0.440 0.427 1.1e-62
TAIR|locus:2170184608 TBR [Arabidopsis thaliana (tax 0.884 0.565 0.356 9e-61
TAIR|locus:2182157464 TBL11 "TRICHOME BIREFRINGENCE- 0.856 0.717 0.373 1.6e-56
TAIR|locus:2155874457 TBL4 "AT5G49340" [Arabidopsis 0.907 0.772 0.346 2.5e-56
TAIR|locus:2082078 ESK1 "ESKIMO 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1215 (432.8 bits), Expect = 1.3e-123, P = 1.3e-123
 Identities = 223/392 (56%), Positives = 280/392 (71%)

Query:     1 PQHQEFAQEAE-PEVE-DKANQDRK-VVLPLEKCDIFAGKWVLDNVTHPLYKEDECEFLT 57
             P  +E ++  E  ++E   A +D + V LP E+CD+F G+WV DN THPLYKED+CEFLT
Sbjct:   107 PVQEEVSKTEEVKKIELFAATEDEEDVELPPEECDLFTGEWVFDNETHPLYKEDQCEFLT 166

Query:    58 EWVTCLRNGRPDSLYQKWRWQPTDCSLPRFDAXXXXXXXXXXXXXXVGDSIHYNQWQSLV 117
               VTC+RNGR DSLYQ WRWQP DCSLP+F A              VGDS++ NQW+S+V
Sbjct:   167 AQVTCMRNGRRDSLYQNWRWQPRDCSLPKFKAKLLLEKLRNKRMMFVGDSLNRNQWESMV 226

Query:   118 CMVQSVIPPGKKSLRYISTQTTAFTLEVLLTILSFSDYNATLEFYWAPFLVESNADPPTM 177
             C+VQSV+PPG+KSL    +          L++    DYNAT+EFYWAPFLVESN+D P M
Sbjct:   227 CLVQSVVPPGRKSLNKTGS----------LSVFRVEDYNATVEFYWAPFLVESNSDDPNM 276

Query:   178 RDGKLDPVVMPESITKHGQNWKGVDYLIFNTYIWWTKYPTMKVLRGSFDEGATEYDEIDM 237
                 L+ ++MPESI KHG NWKGVD+L+FNTYIWW     MKVLRGSFD+G TEY+EI+ 
Sbjct:   277 HS-ILNRIIMPESIEKHGVNWKGVDFLVFNTYIWWMNTFAMKVLRGSFDKGDTEYEEIER 335

Query:   238 YTVYEKTLRAWGKWVEENVNPNLTSVFFSSAAPKHVRSSDRNNVNGVKCVEETTPIFNRT 297
                Y + +R WG WVE N++P  T+VFF+S +P H++S D  N +G+KC  ETTPI N +
Sbjct:   336 PVAYRRVMRTWGDWVERNIDPLRTTVFFASMSPLHIKSLDWENPDGIKCALETTPILNMS 395

Query:   298 TRLEVGTNQQLFAIAANVTQSMEVPVHFLNITSLSEYRKDAHTSVYGTAAGKMLLPEQIS 357
                 VGT+ +LF++A NVT S+ VPV+FLNIT LSEYRKDAHTSV+    GKML PEQ +
Sbjct:   396 MPFSVGTDYRLFSVAENVTHSLNVPVYFLNITKLSEYRKDAHTSVHTIRQGKMLTPEQQA 455

Query:   358 EPTTYADCLHWCLPGLPDTWNELVYARIVSGS 389
             +P TYADC+HWCLPGLPDTWNE +Y RI+S S
Sbjct:   456 DPNTYADCIHWCLPGLPDTWNEFLYTRIISRS 487




GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0009414 "response to water deprivation" evidence=IMP
GO:0009651 "response to salt stress" evidence=IMP
GO:0050826 "response to freezing" evidence=IMP
GO:0009409 "response to cold" evidence=IMP
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEP
TAIR|locus:2065069 TBL28 "TRICHOME BIREFRINGENCE-LIKE 28" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2179172 TBL3 "TRICHOME BIREFRINGENCE-LIKE 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2063125 TBL33 "AT2G40320" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057145 TBL34 "AT2G38320" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088659 TBL1 "AT3G12060" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080280 TBL36 "AT3G54260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2170184 TBR [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2182157 TBL11 "TRICHOME BIREFRINGENCE-LIKE 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2155874 TBL4 "AT5G49340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query389
pfam13839270 pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Estera 6e-93
PLN02629387 PLN02629, PLN02629, powdery mildew resistance 5 2e-84
pfam1441655 pfam14416, PMR5N, PMR5 N terminal Domain 4e-25
>gnl|CDD|222410 pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p Back     alignment and domain information
 Score =  279 bits (716), Expect = 6e-93
 Identities = 118/304 (38%), Positives = 153/304 (50%), Gaps = 36/304 (11%)

Query: 84  LPRFDAKLLLNKLRGKRLMLVGDSIHYNQWQSLVCMVQSVIPPGKKSLRYISTQTTAFTL 143
           LPRFDA+  L +LRGKR++ VGDS+  NQW+SLVC++  V PP  K+             
Sbjct: 1   LPRFDAQQFLERLRGKRVVFVGDSLSRNQWESLVCLLSQVEPPKGKT----------LER 50

Query: 144 EVLLTILSFSDYNATLEFYWAPFLVESNADPPTMRDGKLDPVVMPESITKHGQNWKGVDY 203
           +  L    F DYN T+EFYW+PFLVES+      R  KLD         K  + W G D 
Sbjct: 51  DGRLFRFRFKDYNVTIEFYWSPFLVESDNAEEGKRVLKLD-----SIDEKWSKLWPGADV 105

Query: 204 LIFNTYIWWTKYPTMKVLRGSFDEGATEYDEIDMYTVYEKTLRAWGKWVEENVNPNLTSV 263
           L+FN+  WW      KV  G      + Y E+     Y K L  W KWV+ N+ P+ T V
Sbjct: 106 LVFNSGHWWLHR---KVYIGWDYCQKSNYKEMGFLDAYRKALETWAKWVDVNLPPSKTRV 162

Query: 264 FFSSAAPKHVRSSDRNNVNGVKCVEETTPIFNRTTRLEVGTNQQLFAIAANVTQ--SMEV 321
           FF + +P H    + N   G  C  ET P+     +   G   ++  I   V    +M+ 
Sbjct: 163 FFRTFSPVHFEGGEWN--TGGSCY-ETEPLLGSEYK---GLTPEMIDIVNEVLSRAAMKT 216

Query: 322 PVHFLNITSLSEYRKDAHTSVYGTAAGKMLLPEQISEPTTYADCLHWCLPGLPDTWNELV 381
           PV  L+IT LS+YRKD H SVY                    DCLHWCLPG+PDTWNEL+
Sbjct: 217 PVKLLDITLLSQYRKDGHPSVYRKPGPPKK----------EQDCLHWCLPGVPDTWNELL 266

Query: 382 YARI 385
            A +
Sbjct: 267 LALL 270


The PC-Esterase family is comprised of Cas1p, the Homo sapiens C7orf58, Arabidopsis thaliana PMR5 and a group of plant freezing resistance/coldacclimatization proteins typified by Arabidopsis thaliana ESKIMO1, animal FAM55D proteins, and animal FAM113 proteins. The PC-Esterase family has features that are both similar and different from the canonical GDSL/SGNH superfamily. The members of this family are predicted to have Acyl esterase activity and predicted to modify cell-surface biopolymers such as glycans and glycoproteins. The Cas1p protein has a Cas1_AcylT domain, in addition, with the opposing acyltransferase activity. The C7orf58 family has a ATP-Grasp domain fused to the PC-Esterase and is the first identified secreted tubulin-tyrosine ligase like enzyme in eukaryotes. The plant family with PMR5, ESK1, TBL3 etc have a N-terminal C rich potential sugar binding domain followed by the PC-Esterase domain. Length = 270

>gnl|CDD|215338 PLN02629, PLN02629, powdery mildew resistance 5 Back     alignment and domain information
>gnl|CDD|206583 pfam14416, PMR5N, PMR5 N terminal Domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 389
PLN02629387 powdery mildew resistance 5 100.0
PF13839263 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family f 100.0
PF1441655 PMR5N: PMR5 N terminal Domain 99.94
cd01842183 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SG 97.51
>PLN02629 powdery mildew resistance 5 Back     alignment and domain information
Probab=100.00  E-value=4.7e-115  Score=867.15  Aligned_cols=333  Identities=39%  Similarity=0.782  Sum_probs=292.7

Q ss_pred             CCCCcCccCeeeeCCCCCCCcCCCCCc-ccccccccccCCCCCcccceeeeecCCCCCCccCHHHHHHHhcCCeEEEEec
Q 047865           28 LEKCDIFAGKWVLDNVTHPLYKEDECE-FLTEWVTCLRNGRPDSLYQKWRWQPTDCSLPRFDAKLLLNKLRGKRLMLVGD  106 (389)
Q Consensus        28 ~~~Cd~~~G~WV~d~~~~PlY~~~~Cp-~i~~~~~C~~nGRpD~~yl~WrWqP~~C~Lprfd~~~fl~~lrgk~l~FVGD  106 (389)
                      .+.||||+|+||+|+. +|||++++|| ||+++|||++|||||++|++|||||++|+||||||.+||++|||||||||||
T Consensus        50 ~~~CD~f~G~WV~D~s-~PlY~~~~Cp~fi~~~~nC~knGRPD~~Yl~WRWqP~gC~LPRFda~~fLe~~RgKrl~FVGD  128 (387)
T PLN02629         50 QSTCALFVGTWVRDDS-YPLYQSSDCPGVIDPEFNCQMYGRPDSDYLKYRWQPLNCELPRFNGLEFLLKMKGKTVMFVGD  128 (387)
T ss_pred             ccccCCCCCeEecCCC-CCCCCCCCCccccccccchhhcCCCCcchhhccccCCCCCCCCcCHHHHHHHhcCCeEEEecc
Confidence            6889999999999985 9999999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHhhhhcCCCCceeeeecCceeeEEEeeceeeeeeccccceEEEEEecccccccCCCCCCCCCCCCCccc
Q 047865          107 SIHYNQWQSLVCMVQSVIPPGKKSLRYISTQTTAFTLEVLLTILSFSDYNATLEFYWAPFLVESNADPPTMRDGKLDPVV  186 (389)
Q Consensus       107 Sl~Rnq~~SL~ClL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~n~tv~f~wspfLv~~~~~~~~~~~g~~~~~l  186 (389)
                      ||+|||||||+|||+++++..++.+...+ +...|+         |++||+||+||||||||+.+...       ..++|
T Consensus       129 SL~RNQ~eSLvClL~~~~p~~~~~~~~~~-~~~~~~---------F~~yN~TV~~ywspfLV~~~~~~-------~~~~l  191 (387)
T PLN02629        129 SLGRNQWESLICLISSSVPSTRTQMSRGD-PLSTFK---------FLDYGVSISFYKAPYLVDIDAVQ-------GKRVL  191 (387)
T ss_pred             ccchhHHHHHHHHhhccCCCCceeeecCC-ceEEEE---------eccCCEEEEEEecceEEeeecCC-------CceeE
Confidence            99999999999999998876655555444 556666         99999999999999999986532       13467


Q ss_pred             ccccccccCCCCccccEEEEecccccccCCCceeccceecCCCccccccCHHHHHHHHHHHHHHHHHhhcCCCcceEEEe
Q 047865          187 MPESITKHGQNWKGVDYLIFNTYIWWTKYPTMKVLRGSFDEGATEYDEIDMYTVYEKTLRAWGKWVEENVNPNLTSVFFS  266 (389)
Q Consensus       187 ~~~~ld~~~~~w~~~DvlV~ntG~Ww~~~~~~~~~~g~~~~~~~~~~~~~~~~ay~~al~t~~~~v~~~~~~~~~~vffR  266 (389)
                      ++|.+|+.+..|.++|||||||||||.+++.++. ++++++|..++++|++.+||++||+||++||++++++.+++||||
T Consensus       192 ~LD~id~~a~~w~~~DvlVfntghWw~~~~~~~~-~~~~~~g~~~~~~~~~~~A~r~al~T~~~wv~~~~~~~kt~vffr  270 (387)
T PLN02629        192 KLEEISGNANAWRDADVLIFNTGHWWSHQGSLQG-WDYIESGGTYYQDMDRLVALEKALRTWAYWVDTNVDRSRTRVFFQ  270 (387)
T ss_pred             EecCcchhhhhhccCCEEEEeCccccCCCCeeEE-eeeeccCCccccCccHHHHHHHHHHHHHHHHHhcCCCCCcEEEEE
Confidence            8888988888999999999999999999865433 467788888899999999999999999999999999999999999


Q ss_pred             ecCCCCcccCCCCCC---CCCCCCCccccCCCCccccccCCcHHHHHHHHHHHhcCCcceEEeeccccccccccCCCCCc
Q 047865          267 SAAPKHVRSSDRNNV---NGVKCVEETTPIFNRTTRLEVGTNQQLFAIAANVTQSMEVPVHFLNITSLSEYRKDAHTSVY  343 (389)
Q Consensus       267 t~SP~Hf~~g~Wn~~---~gG~C~~~T~P~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~v~lLDIT~ls~~R~DgHps~y  343 (389)
                      |+||+||+||+||+.   .+|+|+++|+|+.++++ .  +....+++++++++++++.+|+|||||.||++|||||||+|
T Consensus       271 T~SP~Hfe~g~Wn~gg~~~~~~C~~et~P~~~~~~-~--~~~~~~~~~ve~v~~~~~~~v~lLDIT~ls~lR~DgHPs~Y  347 (387)
T PLN02629        271 SISPTHYNPSEWSAGASTTTKNCYGETTPMSGMTY-P--GAYPDQMRVVDEVIRGMHNPAYLLDITLLSELRKDGHPSIY  347 (387)
T ss_pred             ecCcccccCCCcCCCCCCCCCCCccCCccCcCccc-c--CcchHHHHHHHHHHHhcCCceEEEechhhhhcCCCCCcccc
Confidence            999999999999931   13579989999986543 2  33344556888888889999999999999999999999999


Q ss_pred             CCccCCCCCccccCCCCCCCCcccccCCCchhHHHHHHHHHHh
Q 047865          344 GTAAGKMLLPEQISEPTTYADCLHWCLPGLPDTWNELVYARIV  386 (389)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~DClHWCLPGv~DtWNelL~~~L~  386 (389)
                      +..    ++++++.++..++||+||||||||||||||||++|+
T Consensus       348 ~~~----~~~~~~~~p~~~~DC~HWCLPGvpDTWNelL~a~L~  386 (387)
T PLN02629        348 SGD----LSPSQRANPDRSADCSHWCLPGLPDTWNQLFYTALF  386 (387)
T ss_pred             cCC----CchhhccCCCCCCCcccccCCCCCccHHHHHHHHHh
Confidence            753    345666677788999999999999999999999997



>PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p Back     alignment and domain information
>PF14416 PMR5N: PMR5 N terminal Domain Back     alignment and domain information
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query389
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 41.4 bits (96), Expect = 5e-04
 Identities = 36/295 (12%), Positives = 84/295 (28%), Gaps = 84/295 (28%)

Query: 35  AGKWVL-DNVTHPLYKEDECEFLTEWVTCLRNGRPDSLYQK-----WRWQPTDCSLPRFD 88
           +GK  +  +V      + + +F   W+       P+++ +      ++  P   S     
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 89  AKLLLN----KLRGKRLM---------LVGDSIHYNQW---------QSLV----CMVQS 122
           + + L     +   +RL+         LV  ++  N           + L+      V  
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-QNAKAWNAFNLSCKILLTTRFKQVTD 279

Query: 123 VIPPGKKSLRYISTQTTAFTLEVLLTILSFSDYNATLEFYWAPFLVESNAD-PPTMRDGK 181
            +     +   +   +   T + + ++L               +L     D P  +    
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLL-------------LKYLDCRPQDLPREVLTT- 325

Query: 182 LDPVVM---PESITKHGQNWKGVDYLIFNTYIWWTKYPTMK---VLRGSFDEGATEYDEI 235
            +P  +    ESI      W   D         W      K   ++  S +      +  
Sbjct: 326 -NPRRLSIIAESIRDGLATW---DN--------WKHVNCDKLTTIIESSLN----VLEPA 369

Query: 236 DMYTVYE-------------KTL-RAWGKWVEENVNPNLTSVFFSSAAPKHVRSS 276
           +   +++               L   W   ++ +V   +  +   S   K  + S
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424


Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query389
4h08_A200 Putative hydrolase; GDSL-like lipase/acylhydrolase 80.35
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron} Back     alignment and structure
Probab=80.35  E-value=1.7  Score=37.48  Aligned_cols=51  Identities=14%  Similarity=0.186  Sum_probs=34.9

Q ss_pred             cccEEEEecccccccCCCceeccceecCCCccccccCHHHHHHHHHHHHHHHHHhhcCCCcceEEEeecCCCCc
Q 047865          200 GVDYLIFNTYIWWTKYPTMKVLRGSFDEGATEYDEIDMYTVYEKTLRAWGKWVEENVNPNLTSVFFSSAAPKHV  273 (389)
Q Consensus       200 ~~DvlV~ntG~Ww~~~~~~~~~~g~~~~~~~~~~~~~~~~ay~~al~t~~~~v~~~~~~~~~~vffRt~SP~Hf  273 (389)
                      .+|+|||+.|..=..                     ...+.|+..|+++++.+.+.  ...++++|-+..|-..
T Consensus        74 ~pd~Vvi~~G~ND~~---------------------~~~~~~~~~l~~ii~~l~~~--~p~~~ii~~~~~P~~~  124 (200)
T 4h08_A           74 KFDVIHFNNGLHGFD---------------------YTEEEYDKSFPKLIKIIRKY--APKAKLIWANTTPVRT  124 (200)
T ss_dssp             CCSEEEECCCSSCTT---------------------SCHHHHHHHHHHHHHHHHHH--CTTCEEEEECCCCCEE
T ss_pred             CCCeEEEEeeeCCCC---------------------CCHHHHHHHHHHHHHHHhhh--CCCccEEEeccCCCcc
Confidence            479999988854110                     12356888888888877653  3466888888888653




Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query389
d3dc7a1207 Uncharacterized protein Lp3323 {Lactobacillus plan 85.53
d3bzwa1248 Uncharacterized protein BT2961 {Bacteroides thetai 83.67
d1pvva2163 Ornithine transcarbamoylase {Archaeon Pyrococcus f 81.02
>d3dc7a1 c.23.10.9 (A:18-224) Uncharacterized protein Lp3323 {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: SGNH hydrolase
family: BT2961-like
domain: Uncharacterized protein Lp3323
species: Lactobacillus plantarum [TaxId: 1590]
Probab=85.53  E-value=0.12  Score=42.58  Aligned_cols=15  Identities=40%  Similarity=0.388  Sum_probs=12.7

Q ss_pred             hcCCeEEEEechhhH
Q 047865           96 LRGKRLMLVGDSIHY  110 (389)
Q Consensus        96 lrgk~l~FVGDSl~R  110 (389)
                      +..|||+|+|||++-
T Consensus         2 ~~~kri~~iGDSit~   16 (207)
T d3dc7a1           2 VSFKRPAWLGDSITA   16 (207)
T ss_dssp             BCCSSEEEEESTTTS
T ss_pred             CCCCEEEEEehHhhc
Confidence            457899999999984



>d3bzwa1 c.23.10.9 (A:38-285) Uncharacterized protein BT2961 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure