Citrus Sinensis ID: 047869
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2233 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SRU2 | 5098 | Auxin transport protein B | yes | no | 0.978 | 0.428 | 0.550 | 0.0 | |
| B9G2A8 | 4965 | Auxin transport protein B | yes | no | 0.618 | 0.277 | 0.511 | 0.0 | |
| A2AN08 | 5180 | E3 ubiquitin-protein liga | yes | no | 0.301 | 0.129 | 0.279 | 6e-59 | |
| Q2TL32 | 5194 | E3 ubiquitin-protein liga | yes | no | 0.300 | 0.129 | 0.279 | 7e-59 | |
| Q5T4S7 | 5183 | E3 ubiquitin-protein liga | yes | no | 0.301 | 0.129 | 0.271 | 8e-58 | |
| Q9VLT5 | 5322 | Protein purity of essence | yes | no | 0.281 | 0.118 | 0.265 | 2e-51 | |
| Q29L39 | 5381 | Protein purity of essence | yes | no | 0.283 | 0.117 | 0.265 | 2e-49 | |
| Q54QG5 | 5875 | Probable E3 ubiquitin-pro | yes | no | 0.158 | 0.060 | 0.290 | 2e-38 | |
| Q86XK2 | 927 | F-box only protein 11 OS= | no | no | 0.029 | 0.071 | 0.417 | 4e-08 | |
| Q7TPD1 | 843 | F-box only protein 11 OS= | no | no | 0.029 | 0.078 | 0.417 | 4e-08 |
| >sp|Q9SRU2|BIG_ARATH Auxin transport protein BIG OS=Arabidopsis thaliana GN=BIG PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 2370 bits (6142), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1239/2250 (55%), Positives = 1610/2250 (71%), Gaps = 64/2250 (2%)
Query: 8 LMDLCQFLSDATTTNISPLDFIY-----RLRSDDSLRLGLKLFLSVLKHAVHPIKNDDVR 62
L +LC+FL D T RLRSDDS++ GL+ F +L+ V PI DD
Sbjct: 5 LANLCRFLFDDTAFPSLSSSASSDLFSRRLRSDDSIKRGLRSFYLLLRWGVAPIGGDD-- 62
Query: 63 DEEESRSDSINDKKLGFQSWTCDQVHAVTSLGHVIASASRSLA----------VEQAGPV 112
+DS KL F++W+ Q+ A+ S+ I SRSL V+Q P+
Sbjct: 63 ------ADS--SGKLRFETWSDSQLQALVSISQAILLLSRSLLGTDLTLNQGLVDQLEPI 114
Query: 113 IVAVMQELLEFAVCYLERSEFDNDDFSVQNHMGQLLEIVLIGGTDKVIEQVQLYPVNSLV 172
++ V+QE++EF++ +LE+S F +D ++ +M LLEI G++K + + + +
Sbjct: 115 VLGVIQEVMEFSLSFLEKSSFRQNDLKMEINMEILLEIASFDGSEKQYDILPDFSPAEVA 174
Query: 173 QLLPIVSTDCDDIVLDDQINCCLQGGVTCSREEKPLDRLVMALASECMQPDRQASASSGP 232
+L P S + D++ + C QGG CS EEKP+DRL++ L SEC++ D QA +
Sbjct: 175 ELWPAFSGEHDNMDAQSLVKCTFQGG-RCSNEEKPVDRLLITLMSECIESDVQAQSVVKS 233
Query: 233 TSHQDMNNLVFLSQHWAVSHVECIRRLILLCKKLIELPDMFDEKVAGTSFRRRLSFSLRI 292
QD +L ++H AV H+ C+ RLI++CK+L++LP+M DEK + +LSF LRI
Sbjct: 234 PFQQDCGDLNPFTRHLAVVHLRCVCRLIMVCKELVQLPNMLDEKTVDQAVLDKLSFCLRI 293
Query: 293 MKLLGSLVKDMPYVKYDALILHAIASFADVLPSLFQPCFEFANNHCAAEGSFESIILLLL 352
+KLLGSL KD+ ++ D +L A+ASF D P LF+ FEF N H A EG+ ES+ L L+
Sbjct: 294 LKLLGSLSKDVQSIENDGSLLQAVASFTDAFPKLFRVFFEFTN-HTATEGNIESLSLALV 352
Query: 353 EEFLHIVQVIFCSGNFFQNIRACIMASILDNLDPSIWRYDNSSANLKVPLAYFPRTVLYI 412
E FL++VQ+IF + FQN++AC+ ASI+ NLD S+WRYD SS NL PLAYFPR+V+Y
Sbjct: 353 EGFLNLVQLIFGKSSVFQNVQACVAASIVSNLDSSVWRYDGSSCNLTPPLAYFPRSVIYT 412
Query: 413 LKLLQDLKRQAYQALDIKEFDREHSSDGADALIDSPSCHVHDEKVPLLKKFTVEELVKII 472
LKL+QDLKRQ Y D++ + E + + + +DS H+ EK+PLLK FTVE+++++I
Sbjct: 413 LKLIQDLKRQPYHIHDLRVLESEVTYEDVSSTVDSVYFHLRQEKIPLLKCFTVEDIMRVI 472
Query: 473 FPSSTKWVDNLMHLLFFLHSEGIKLRLKVERSHTSSRSNCTSELENTVCHEDEALFGNLF 532
FPSS++W+DN HL++FLH EG+KLR KVER+++S RSN +E+E+ + H+DEALFGNLF
Sbjct: 473 FPSSSQWMDNFFHLVYFLHREGVKLRPKVERTYSSLRSNSFAEVESQISHDDEALFGNLF 532
Query: 533 SEGSRSIGSSDGYDQPAIAVTCSSSNCNMPMQAAVELLSFLKLCLFSHDWIPNVFEDGCK 592
SEGSRS+ S + DQP ++V+ N+ +QAA ELL+FL+ C+ +W+P+++EDGCK
Sbjct: 533 SEGSRSLCSIEPNDQPPVSVSS-----NLLLQAAKELLNFLRACILCQEWVPSIYEDGCK 587
Query: 593 KLSRNHIDILLSLLNCQGCCTEDKTSVSFTAPHGERKNGEIHQLCYELLNNLLTCHAFSD 652
KL HIDILL+++ GC EDK S E + G + +ELL NLL A SD
Sbjct: 588 KLDTGHIDILLNIV---GCSIEDKASDGGCMLQDEGRPGHV---AFELLLNLLRSRALSD 641
Query: 653 SLEAHLVECILNVESGVFVYNDQTLMLLARTLFCRVGLAGCNLRTKIYQRFVDFIVVKAK 712
LE++L + IL VE+ F YND+TL LLA TL CR GLAG LR KIY FV F+ +A+
Sbjct: 642 FLESYLFQQILVVENSDFNYNDKTLALLAHTLLCRPGLAGAQLRAKIYDGFVSFVTERAR 701
Query: 713 AVSSKCPSLKELLETLPSALHMEILLIAFYLSSEEEKAILANLIFSSLRAVDVSPEGFY- 771
+ ++ SLKEL LPSA H+EILL+AF+LS+E EKA +NLI S L VD +P G
Sbjct: 702 GICAEALSLKELTACLPSAFHIEILLMAFHLSNEAEKAKFSNLIASCLHKVD-TPAGICD 760
Query: 772 STQLSCWALPVSRLIFLLRHMIFYPHNCPPSLLLDLRSKLREAPTCVSHMPSNAHDHLSS 831
QLS WA+ +SRL+ LL HM+ +P+ CP SL+LDLRSKLRE +C S++ DHLSS
Sbjct: 761 GPQLSSWAMLISRLLVLLHHMLLHPNTCPTSLMLDLRSKLREVRSCGSNLHVTVGDHLSS 820
Query: 832 WASIAVKSVMGTSVEEEPVISNLINQLIDTAILPPLLSTDEPAIQSLCLNWGDMRETFSW 891
WAS+ + + + E+E V S+L++Q+ID + PP D ++L L++GD+ +
Sbjct: 821 WASLVARGITDSWAEDESV-SHLMSQMIDFSPHPPTFQNDVSTAKTLNLDYGDLSASLCR 879
Query: 892 ILGLWKGRKAAAVEDLIVERYIFSLSWDIPTMGVTLDRQPSLLWESQTLDASNLGYFFLL 951
+LGLWKG+KA VEDL+VERYIF LS DI + LD QPSL Q +D SN
Sbjct: 880 VLGLWKGKKAGKVEDLLVERYIFMLSSDIARINCALDSQPSLHVNYQNVDISNSVDLIST 939
Query: 952 SHLVPDQLNIAAKGQAFPGVVVSVLQHLLAAHTPESI-DELGWDFLRNGSWLSLVLSLLN 1010
SHL+ +N+ + +++ VL L AA PE + ++LGWD++R G+WLSL+L L+
Sbjct: 940 SHLLVGDINVVGRNIELRNILIGVLNQLQAA--PEQVVEDLGWDYIREGAWLSLLLYFLD 997
Query: 1011 VGIRRYCMKNKVPGVGSLQTESTSWDTDYIIVADGLICSLIETGQVVVLFRWLSTLLSRY 1070
G+ YC KN + E TS D Y+ A+G++ L++TG + L R LS+L+ +Y
Sbjct: 998 GGVWDYCNKNSCSEIDPFWKECTSVDAKYVAAAEGVVSYLMKTGDIAELLRMLSSLVGKY 1057
Query: 1071 LQAYQKAFLATFDNSQCDANQFASLLLLKHSGLEKCLEDELLEKIGICSSQLESVFHLLL 1130
L+ Y+KAFLATF + + SLLLLKH+ K L+ E KIG S L+ +F+L
Sbjct: 1058 LRVYKKAFLATFSDWNHHGHSSPSLLLLKHTQFGKSLQGEY-AKIGDNSLHLQCIFYLS- 1115
Query: 1131 KVDEVVDKRALGILSKVFWECMLHGLPSHIRTPSGIFLSCVLSIRAIISALDGLLRMETL 1190
K+D + D R G+L KVFWE M+HG P+ ++T S I LSC+LSIR I+ ++GLL++
Sbjct: 1116 KLDSLGDGRGSGVLWKVFWEFMVHGFPTSLQTSSAILLSCILSIRCIVLTINGLLKLGNS 1175
Query: 1191 QVNVSLETEVLHQILDSVMVIKFDKIFESLHEKCAAIYCNLSAGLELADYSELFLMKNME 1250
+ ++T VLHQ+LDS+M+IKFD++FES H KC I+ N+ A L+L D +ELFLMK+ME
Sbjct: 1176 KEKFGVDTSVLHQLLDSIMIIKFDQVFESFHGKCEEIHQNICAVLQLPDLTELFLMKDME 1235
Query: 1251 GYLTDISSREVSDSSILEWVVAKTIDTMDVLRKDPQKSLIFKFYLGAEDVAQQVKELYSL 1310
G++ DIS+ ++ S +LE V+ K +D MD L KD KS IFKFYLG + V++ +E Y L
Sbjct: 1236 GFVRDISAEQIDRSQVLEGVITKIVDVMDSLSKDSSKSDIFKFYLGVDAVSEHTREFYEL 1295
Query: 1311 QRGDVLVLIDSLDSCYSELVNQKVLNFFVDLLSGDLCVFLKQKIQKKFLGMDLLPLSKWL 1370
QRGD+ V IDSLD C E VN KVLNF VDLLS L++++Q+KF+ MDL+ LS WL
Sbjct: 1296 QRGDLSVFIDSLDYCSLEPVNIKVLNFLVDLLSVAQSPDLRRRVQQKFIDMDLISLSGWL 1355
Query: 1371 EKRLLGSKMEMSGGVSSAKGTSVSLRESTMSFLLSLVSSPEDSQSRELHNHLFEAVLISL 1430
E+RLLGS +E G +AKG S+ RE+ M+F+ LVSS D Q+REL NHLFEA+LISL
Sbjct: 1356 ERRLLGSFVEEIDGKKTAKGNSLPFREAAMNFINCLVSSTNDLQTRELQNHLFEALLISL 1415
Query: 1431 ETAFTQFDIHIAKSYFHFVVQISRGENSAKQLLKRIVMLMDKLAGDERLLPGLKFLFGFL 1490
+TAF FDIH++ SYFHFV+Q++R +N K +LKR +MLM+KLA +E+LLPGLKF+FG +
Sbjct: 1416 DTAFLSFDIHMSMSYFHFVLQLAREDNLMKMVLKRTIMLMEKLAAEEKLLPGLKFIFGVI 1475
Query: 1491 ANVLGDCGSFKSIPERPS-GKSLSGNSLIA-SSVASRPV-----GSRKNSDTLVLCASQE 1543
+L + PS G+SL G SL + + A+ P+ G+ K SDTL L QE
Sbjct: 1476 GTLLSN--------RSPSHGESLCGKSLASYKNTATGPLVPKLSGTTKKSDTLALPVDQE 1527
Query: 1544 GGSLPLECDATSVDEDEDDGTSDGDIASIDKDEEDDPNSERALASKVCTFTSSGSNFMEQ 1603
G S+ LECD TSVDEDEDDGTSDG++AS+DK++E+D NSER LASKVCTFTSSGSNFMEQ
Sbjct: 1528 GSSISLECDVTSVDEDEDDGTSDGEVASLDKEDEEDANSERYLASKVCTFTSSGSNFMEQ 1587
Query: 1604 HWYFCYTCDLTVSKGCCSVCAKVCHRGHRVVYSRSSRFFCDCGAGGVRGSSCQCLKPRKY 1663
HWYFCYTCDLTVSKGCCSVCAKVCHRGHRVVYSRSSRFFCDCGAGGVRGSSCQCLKPRKY
Sbjct: 1588 HWYFCYTCDLTVSKGCCSVCAKVCHRGHRVVYSRSSRFFCDCGAGGVRGSSCQCLKPRKY 1647
Query: 1664 TGSDSASSRAASNFQSFLPFTEDADQLPESDSDLDEDASTDTDISSLRLSIPRELQDGIA 1723
G+ SA +R +NFQSFLP +EDADQL ESDSD++ED + + + L IP+E Q ++
Sbjct: 1648 NGNGSAPARGTNNFQSFLPLSEDADQLGESDSDVEEDGFGEEN--HVVLYIPKETQYKMS 1705
Query: 1724 KLLEELDLEGQVLKLCSSLLPSITIRREANVSKDRQIILGNDKVLSYGVDLLQLKKAYKS 1783
LLEEL +E +VL+L SSLLPSIT +R++ +SK++Q+ LG DKVLS+ DLLQLKKAYKS
Sbjct: 1706 LLLEELGIEDRVLELFSSLLPSITSKRDSGLSKEKQVNLGKDKVLSFDTDLLQLKKAYKS 1765
Query: 1784 GSLDLKIKADYSNARELKSHLASGSLVKSLLSVSSRGRLAVGEGDKVAIFDVGQLIGQAT 1843
GSLDLKIKADY+N+++LKS LA+GSLVKSLLSVS RGRLAVGEGDKVAIFDVGQLIGQAT
Sbjct: 1766 GSLDLKIKADYTNSKDLKSLLANGSLVKSLLSVSVRGRLAVGEGDKVAIFDVGQLIGQAT 1825
Query: 1844 IQPVTADKTNVKPLSRNIVRFEIVHLAFNSIVENYLTVAGYEDCQVLTLNPRGEVTDRLA 1903
I P+ ADK NVKPLSRNIVRFEIVHL+FN +VENYL VAG EDCQ+LTLN RGEV DRLA
Sbjct: 1826 IAPINADKANVKPLSRNIVRFEIVHLSFNPVVENYLAVAGLEDCQILTLNHRGEVIDRLA 1885
Query: 1904 IELALQGAYIRRVDWVPGSPVQLMVVTNKFVKIYDLSQDNISPLHYFTLPDDMIVDATLV 1963
+ELALQGA+IRR+DWVPGS VQLMVVTNKFVKIYDLSQD+ISP YFTLP+DMIVDATL
Sbjct: 1886 VELALQGAFIRRIDWVPGSQVQLMVVTNKFVKIYDLSQDSISPTQYFTLPNDMIVDATLF 1945
Query: 1964 IASRGKMFLIVLSECGSLYRLELSVEGNVGATPLKEIIQFNDREIHAKGLSLYFSSTYKL 2023
+ASRG++FL+VLSE G+LYR ELS GN GATPLKEI+Q +++ KG S+YFS TY+L
Sbjct: 1946 VASRGRVFLLVLSEQGNLYRFELSWGGNAGATPLKEIVQIMGKDVTGKGSSVYFSPTYRL 2005
Query: 2024 LFLSFQDGTTLVGRLSPNAASLSEVSYVFEEQ-DGKLRSAGLHRWKELLASSGLFFCFSS 2082
LF+S+ DG++ +GRLS +A SL++ S +FEE+ D K R AGLHRWKELLA SGLF CFSS
Sbjct: 2006 LFISYHDGSSFMGRLSSDATSLTDTSGMFEEESDCKQRVAGLHRWKELLAGSGLFICFSS 2065
Query: 2083 LKSNAAVAVSLGTNELIAQNMRHAAGSTSPLVGVTAYKPLSKDKVHCLVLHDDGSLQIYS 2142
+KSNA +AVSL + + AQN+RH GS+SP+VG+TAYKPLSKD VHCLVLHDDGSLQIYS
Sbjct: 2066 VKSNAVLAVSLRGDGVCAQNLRHPTGSSSPMVGITAYKPLSKDNVHCLVLHDDGSLQIYS 2125
Query: 2143 HVPHGVDAATSVTAEKVKKLGSNILNNKAYAGTKPEFPLDFFEKTVCITADVKLGGDAIR 2202
HV GVD ++ TAEKVKKLGS ILNNK YAG KPEFPLDFFE+ CITADV+LG DAIR
Sbjct: 2126 HVRSGVDTDSNFTAEKVKKLGSKILNNKTYAGAKPEFPLDFFERAFCITADVRLGSDAIR 2185
Query: 2203 NGDSEGAKQSLASEDGYVESPSPAGFKVFV 2232
NGDSEGAKQSLASEDG++ESPSP GFK+ V
Sbjct: 2186 NGDSEGAKQSLASEDGFIESPSPVGFKISV 2215
|
Required for auxin efflux and polar auxin transport (PAT) influencing auxin-mediated developmental responses (e.g. cell elongation, apical dominance, lateral root production, inflorescence architecture, general growth and development). Controls the elongation of the pedicels and stem internodes through auxin action. Involved in the expression modulation of light-regulated genes. Represses CAB1 and CAB3 genes expression in etiolated seedlings. Confers sensitivity to the auxin transport inhibitors N-1-naphthylphthalamic acid (NPA), 2-carboxyphenyl-3-phenylpropane-l,2-dione (CPD), and methyl-2-chloro-9-hydroxyfluorene-9-carboxylate (CFM). Influences the polarized subcellular distribution of the auxin transporter PIN1 in response to auxin transport inhibitors. Plays a role in the regulation of responses to phytohormones such as auxin, cytokinins, ethylene and gibberellic acid (GA), particularly during light-mediated stimuli (e.g. shade ovoidance, etiolation). Required for pericycle cell activation to form lateral root primordia (LRP) in both high and low phosphate P conditions. Necessary for the plant-growth promotion and lateral root development mediated by the fungus Trichoderma virens. Arabidopsis thaliana (taxid: 3702) |
| >sp|B9G2A8|BIG_ORYSJ Auxin transport protein BIG OS=Oryza sativa subsp. japonica GN=Os09g0247700 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|A2AN08|UBR4_MOUSE E3 ubiquitin-protein ligase UBR4 OS=Mus musculus GN=Ubr4 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|Q2TL32|UBR4_RAT E3 ubiquitin-protein ligase UBR4 OS=Rattus norvegicus GN=Ubr4 PE=2 SV=2 | Back alignment and function description |
|---|
| >sp|Q5T4S7|UBR4_HUMAN E3 ubiquitin-protein ligase UBR4 OS=Homo sapiens GN=UBR4 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9VLT5|POE_DROME Protein purity of essence OS=Drosophila melanogaster GN=poe PE=1 SV=1 | Back alignment and function description |
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| >sp|Q29L39|POE_DROPS Protein purity of essence OS=Drosophila pseudoobscura pseudoobscura GN=poe PE=3 SV=1 | Back alignment and function description |
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| >sp|Q54QG5|Y3893_DICDI Probable E3 ubiquitin-protein ligase DDB_G0283893 OS=Dictyostelium discoideum GN=DDB_G0283893 PE=3 SV=2 | Back alignment and function description |
|---|
| >sp|Q86XK2|FBX11_HUMAN F-box only protein 11 OS=Homo sapiens GN=FBXO11 PE=1 SV=3 | Back alignment and function description |
|---|
| >sp|Q7TPD1|FBX11_MOUSE F-box only protein 11 OS=Mus musculus GN=Fbxo11 PE=2 SV=2 | Back alignment and function description |
|---|
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2233 | ||||||
| 359488327 | 6279 | PREDICTED: LOW QUALITY PROTEIN: auxin tr | 0.930 | 0.330 | 0.693 | 0.0 | |
| 147797429 | 5622 | hypothetical protein VITISV_016976 [Viti | 0.918 | 0.364 | 0.682 | 0.0 | |
| 449482228 | 5124 | PREDICTED: LOW QUALITY PROTEIN: auxin tr | 0.984 | 0.428 | 0.604 | 0.0 | |
| 449447679 | 5124 | PREDICTED: auxin transport protein BIG-l | 0.984 | 0.428 | 0.604 | 0.0 | |
| 356567140 | 5112 | PREDICTED: auxin transport protein BIG-l | 0.984 | 0.429 | 0.599 | 0.0 | |
| 357502541 | 5158 | E3 ubiquitin-protein ligase UBR4 [Medica | 0.979 | 0.424 | 0.584 | 0.0 | |
| 124359893 | 2165 | Zinc finger, N-recognin; WD40-like [Medi | 0.935 | 0.965 | 0.606 | 0.0 | |
| 90657637 | 5091 | hypothetical protein [Cleome spinosa] | 0.983 | 0.431 | 0.557 | 0.0 | |
| 297832860 | 5090 | predicted protein [Arabidopsis lyrata su | 0.977 | 0.428 | 0.553 | 0.0 | |
| 30678519 | 5098 | E3 ubiquitin-protein ligase UBR4 [Arabid | 0.978 | 0.428 | 0.550 | 0.0 |
| >gi|359488327|ref|XP_003633742.1| PREDICTED: LOW QUALITY PROTEIN: auxin transport protein BIG-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2920 bits (7569), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1453/2096 (69%), Positives = 1713/2096 (81%), Gaps = 18/2096 (0%)
Query: 141 QNHMGQLLEIVLIGGTDKVIEQVQLYPVNSLVQLLPIVSTDCDDIVLDDQINCCLQGGVT 200
+N++ QLLEI L+ G DK + Q V +LV LLP+++ DI L++ I C QG V+
Sbjct: 1283 KNNVVQLLEIALVAGVDKEPDPSQPCSVYTLVDLLPLLTVKSGDIELENHIKCNPQG-VS 1341
Query: 201 CSREEKPLDRLVMALASECMQPDRQASASSGPTSHQDMNNLVFLSQHWAVSHVECIRRLI 260
CSR EKP+DRL+M LASECMQPD Q +GP HQD+N LV LSQHWAV HV CI+RLI
Sbjct: 1342 CSRGEKPVDRLLMTLASECMQPDSQMQRFTGPNFHQDLNKLVSLSQHWAVLHVGCIQRLI 1401
Query: 261 LLCKKLIELPDMFD-EKVAGTSFRRRLSFSLRIMKLLGSLVKDMPYVKYDALILHAIASF 319
LCK+L+ LPDMFD EK AG +FR+RLSF LRI+KLLGSL +D+PYV+YD +L A+AS
Sbjct: 1402 RLCKELLILPDMFDDEKTAGINFRKRLSFGLRILKLLGSLTRDIPYVEYDPALLQAVASC 1461
Query: 320 ADVLPSLFQPCFEFANNHCAAEGSFESIILLLLEEFLHIVQVIFCSGNFFQNIRACIMAS 379
ADVLPSLF+P FEFAN+H E SFE+++LLLLEEFLH+V+VIF + + FQNI+ACI+AS
Sbjct: 1462 ADVLPSLFKPGFEFANSHAPVESSFENLVLLLLEEFLHLVRVIFWTSSVFQNIQACIIAS 1521
Query: 380 ILDNLDPSIWRYDNSSANLKVPLAYFPRTVLYILKLLQDLKRQAYQALDIKEFDREHSSD 439
+LDNLD +WRY+ S+AN K PLAYFPR+V+YILKL+ ++K+Q YQA D+++
Sbjct: 1522 VLDNLDSDVWRYNKSAANPKPPLAYFPRSVIYILKLIVEVKKQTYQAFDVQD-------- 1573
Query: 440 GADALIDSPSCHVHDEKVPLLKKFTVEELVKIIFPSSTKWVDNLMHLLFFLHSEGIKLRL 499
D IDSPSC +H EK+ LLKK+TVEEL+K IFPSS +WVDNLM L+FFLHSEG+KLR
Sbjct: 1574 --DFQIDSPSCRLHSEKISLLKKYTVEELLKKIFPSSNQWVDNLMDLVFFLHSEGVKLRP 1631
Query: 500 KVERSHTS-SRSNCTSELENTVCHEDEALFGNLFSEGSRSIGSSDGYDQPAIAVTCSSSN 558
K+ERS +S ++++C SE EN VCHEDEALFG+LFSEG RS+GS+DG DQ +V +S+
Sbjct: 1632 KLERSFSSCAKASCNSETENAVCHEDEALFGDLFSEGGRSVGSTDGCDQAPASVNPTSNY 1691
Query: 559 CNMPMQAAVELLSFLKLCLFSHDWIPNVFEDGCKKLSRNHIDILLSLLNCQGCCTEDKTS 618
CNMP+QAA E+L FLK C FS +W +V+EDGCKKLS HIDILLS+LNCQGC +ED+ S
Sbjct: 1692 CNMPIQAASEVLGFLKDCAFSPEWHTSVYEDGCKKLSGKHIDILLSILNCQGCYSEDRIS 1751
Query: 619 VSFTAPHGERKNGEIHQLCYELLNNLLTCHAFSDSLEAHLVECILNVESGVFVYNDQTLM 678
+ T +RK G +H+LC+ELL+NLLT HA SDSLE +L ILNV+SG F+YND TL
Sbjct: 1752 DNLTGLQEQRKTGHVHELCFELLHNLLTRHALSDSLEEYLFGQILNVDSGCFIYNDLTLT 1811
Query: 679 LLARTLFCRVGLAGCNLRTKIYQRFVDFIVVKAKAVSSKCPSLKELLETLPSALHMEILL 738
LLA +L CRVGLAG LR+KIY+ ++DFIV K KA+ SKCPSLKEL TLPS H+EILL
Sbjct: 1812 LLAHSLICRVGLAGSQLRSKIYRGYIDFIVEKTKALYSKCPSLKELFGTLPSVFHIEILL 1871
Query: 739 IAFYLSSEEEKAILANLIFSSLRAVDVSPEGFYSTQLSCWALPVSRLIFLLRHMIFYPHN 798
+AF+LSSE EKA LANLIFSSLR +D +GF STQLSCWA+ VSRLI +LRHMIFYP
Sbjct: 1872 MAFHLSSEGEKATLANLIFSSLRTIDAPADGFNSTQLSCWAILVSRLILVLRHMIFYPRA 1931
Query: 799 CPPSLLLDLRSKLREAPTCVSHMPSNAHDHLSSWASIAVKSVMGTSVEEEPVISNLINQL 858
CP SLLLDLRSKLREAP S+ N D+LSSWASIAV+++MG ++E+P +S+L+NQL
Sbjct: 1932 CPSSLLLDLRSKLREAPLAGSNPSVNPSDNLSSWASIAVENIMGAWIKEDPFLSSLVNQL 1991
Query: 859 IDTAILPPLLSTDEPAIQSLCLNWGDMRETFSWILGLWKGRKAAAVEDLIVERYIFSLSW 918
D A LP L D+ AIQSLCL+W D+ +F WILG WKG+KA VEDLI+ERYIF L W
Sbjct: 1992 SDVASLPASLCRDDLAIQSLCLHWDDICASFYWILGFWKGKKATTVEDLILERYIFILCW 2051
Query: 919 DIPTMGVTLDRQPSLLWES-QTLDASNLGYFFLLSHLVPDQLNIAAKGQAFPGVVVSVLQ 977
DIPTMG LD P LW QTLD S++ YFF SH + +G +F VV+ VLQ
Sbjct: 2052 DIPTMGSALD-HPLPLWNDLQTLDLSDVKYFFHFSHSFLGHSGVIGEGISFLDVVIGVLQ 2110
Query: 978 HLLAAHTPESIDELGWDFLRNGSWLSLVLSLLNVGIRRYCMKNKVPGVGSLQTESTSWDT 1037
HL A H + I++LGWDFLRNG WLSLVLSLL GI YC+KN VPG+G + E S D
Sbjct: 2111 HLHAVHITDDIEDLGWDFLRNGMWLSLVLSLLQTGIGEYCLKNSVPGMGPISPEYASSDN 2170
Query: 1038 DYIIVADGLICSLIETGQVVVLFRWLSTLLSRYLQAYQKAFLATFDNSQCDANQFASLLL 1097
+Y+ +A+GLI SL+E GQV + R LS+ L+RYLQAYQKAFL+T DN Q ++F+ LLL
Sbjct: 2171 EYLTLAEGLISSLLEAGQVAKVSRILSSFLNRYLQAYQKAFLSTIDNGQYHGDRFSPLLL 2230
Query: 1098 LKHSGLEKCLEDELLEKIGICSSQLESVFHLLLKVDEVVDKRALGILSKVFWECMLHGLP 1157
LKH+G++KC++D LLEK GI LESV+ LL K+D++V KRA G LSKVFWEC+LHG P
Sbjct: 2231 LKHTGVDKCMQDGLLEKSGINPCHLESVYGLLSKLDQMVKKRASGFLSKVFWECILHGFP 2290
Query: 1158 SHIRTPSGIFLSCVLSIRAIISALDGLLRMETLQVNVSLETEVLHQILDSVMVIKFDKIF 1217
SH++ SGI LSC+LSIR II L+GLL+++ + N+ +ETEVL +ILDSVM IK D+IF
Sbjct: 2291 SHLQASSGILLSCILSIRGIICILEGLLKIKDARGNILMETEVLQEILDSVMTIKCDRIF 2350
Query: 1218 ESLHEKCAAIYCNLSAGLELADYSELFLMKNMEGYLTDISSREVSDSSILEWVVAKTIDT 1277
ESLH C AIY +LSAG+E +D+S LF MK MEG+L DI++ EVSD SI E +V K ID
Sbjct: 2351 ESLHGNCEAIYHSLSAGMEGSDFSYLFQMKQMEGFLRDINAGEVSDGSIHECIVTKAIDM 2410
Query: 1278 MDVLRKDPQKSLIFKFYLGAEDVAQQVKELYSLQRGDVLVLIDSLDSCYSELVNQKVLNF 1337
MD+LRKDP ++IFKFY+ DV+++V+ELY LQRGD+LVL+DSLD+CYSE VN KVLNF
Sbjct: 2411 MDILRKDPSLAVIFKFYVSMVDVSEKVEELYGLQRGDLLVLVDSLDNCYSESVNVKVLNF 2470
Query: 1338 FVDLLSGDLCVFLKQKIQKKFLGMDLLPLSKWLEKRLLGSKMEMSGGVSSAKGTSVSLRE 1397
FVDLLSGDLC LKQKIQ KFL MDLL LSKWLEKRL+G ++ S GVS AK +S +LRE
Sbjct: 2471 FVDLLSGDLCPDLKQKIQTKFLSMDLLCLSKWLEKRLVGCAVDASEGVSCAKASSTTLRE 2530
Query: 1398 STMSFLLSLVSSPEDSQSRELHNHLFEAVLISLETAFTQFDIHIAKSYFHFVVQISRGEN 1457
STM+F+L LV SP D QS+ELH+HLFEA+LISL+TAF FDIH AKSYFHF+VQ+SRGE+
Sbjct: 2531 STMNFILCLV-SPHDMQSKELHSHLFEAMLISLDTAFILFDIHTAKSYFHFIVQLSRGES 2589
Query: 1458 SAKQLLKRIVMLMDKLAGDERLLPGLKFLFGFLANVLGDCGSFKSIPERPSGKSLSGNSL 1517
K LLKR V LM+KLAGDE LL GLKFLFGFL VL DC S KS E+ GK S S+
Sbjct: 2590 LMKPLLKRTVALMEKLAGDEGLLQGLKFLFGFLGTVLSDCRSNKSTLEKSPGKPFSSGSI 2649
Query: 1518 IASSVASRPVGSRKNSDTLVLCASQEGGSLPLECDATSVDEDEDDGTSDGDIASIDKDEE 1577
VASRPVGSRKNS+TLVL A+QE GS LECDATSVDEDEDDGTSDG++AS+DKDEE
Sbjct: 2650 GVGPVASRPVGSRKNSETLVLSANQETGSASLECDATSVDEDEDDGTSDGEVASMDKDEE 2709
Query: 1578 DDPNSERALASKVCTFTSSGSNFMEQHWYFCYTCDLTVSKGCCSVCAKVCHRGHRVVYSR 1637
DD NSERALASKVCTFTSSGSNFMEQHWYFCYTCDLTVSKGCCSVCAKVCHR HRVVYSR
Sbjct: 2710 DDSNSERALASKVCTFTSSGSNFMEQHWYFCYTCDLTVSKGCCSVCAKVCHRDHRVVYSR 2769
Query: 1638 SSRFFCDCGAGGVRGSSCQCLKPRKYTGSDSASSRAASNFQSFLPFTEDADQLPESDSDL 1697
SSRFFCDCGAGGVRGS+CQCLKPRK+TGS+SA R + NFQSFLPFTED DQLP+SDSDL
Sbjct: 2770 SSRFFCDCGAGGVRGSNCQCLKPRKFTGSNSAPVRGSVNFQSFLPFTEDGDQLPDSDSDL 2829
Query: 1698 DEDASTDTDISSLRLSIPRELQDGIAKLLEELDLEGQVLKLCSSLLPSITIRREANVSKD 1757
DED TD D +S+ LSI RELQDG+ LLEELD+EGQVL+LCSSLLPSI +R++N+S+D
Sbjct: 2830 DEDGCTDVD-NSVSLSISRELQDGMPVLLEELDVEGQVLELCSSLLPSIVSKRDSNLSQD 2888
Query: 1758 RQIILGNDKVLSYGVDLLQLKKAYKSGSLDLKIKADYSNARELKSHLASGSLVKSLLSVS 1817
++IILG DKVLSYGVD+LQLKKAYKSGSLDLKIKADYSNA+ELKSHL+SGSLVKSLLSVS
Sbjct: 2889 KKIILGKDKVLSYGVDILQLKKAYKSGSLDLKIKADYSNAKELKSHLSSGSLVKSLLSVS 2948
Query: 1818 SRGRLAVGEGDKVAIFDVGQLIGQATIQPVTADKTNVKPLSRNIVRFEIVHLAFNSIVEN 1877
RGRLAVGEGDKVAIFDVG LIGQATI PVTADKTNVKPLS+N+VRFEIVHL FN +VEN
Sbjct: 2949 IRGRLAVGEGDKVAIFDVGHLIGQATIAPVTADKTNVKPLSKNVVRFEIVHLVFNPVVEN 3008
Query: 1878 YLTVAGYEDCQVLTLNPRGEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVTNKFVKIY 1937
YL VAG+EDCQVLTL+PRGEVTDRLAIELALQGAYIRR+DWVPGS VQLMVVTN+FVKIY
Sbjct: 3009 YLAVAGFEDCQVLTLSPRGEVTDRLAIELALQGAYIRRIDWVPGSQVQLMVVTNRFVKIY 3068
Query: 1938 DLSQDNISPLHYFTLPDDMIVDATLVIASRGKMFLIVLSECGSLYRLELSVEGNVGATPL 1997
DLSQDNISP+HYFTL DDMIVDATL++AS+G++FLIVLSE GSLYRLELS+EGNVGA PL
Sbjct: 3069 DLSQDNISPMHYFTLSDDMIVDATLLVASQGRVFLIVLSELGSLYRLELSLEGNVGAKPL 3128
Query: 1998 KEIIQFNDREIHAKGLSLYFSSTYKLLFLSFQDGTTLVGRLSPNAASLSEVSYVFE-EQD 2056
KEII DR I AKG S+YFSSTYKLLF+S+QDGTT +GRL+PNA SL+E+S V+E EQD
Sbjct: 3129 KEIIHIQDRNIQAKGSSVYFSSTYKLLFISYQDGTTFIGRLNPNATSLTEISAVYEDEQD 3188
Query: 2057 GKLRSAGLHRWKELLASSGLFFCFSSLKSNAAVAVSLGTNELIAQNMRHAAGSTSPLVGV 2116
GKLR AGLHRWKELL SGLF CFSS+K N A+A+S+G+NEL AQNMRHA GSTSPLVG+
Sbjct: 3189 GKLRPAGLHRWKELLVGSGLFVCFSSVKPNVALAISMGSNELFAQNMRHAVGSTSPLVGI 3248
Query: 2117 TAYKPLSKDKVHCLVLHDDGSLQIYSHVPHGVDAATSVTAEKVKKLGSNILNNKAYAGTK 2176
TAYKPLSKDK+HCLVLHDDGSLQIYSHVP GVDA SVT +KVK+LGS+ILNNKAYAGT
Sbjct: 3249 TAYKPLSKDKIHCLVLHDDGSLQIYSHVPMGVDAGASVTLDKVKRLGSDILNNKAYAGTN 3308
Query: 2177 PEFPLDFFEKTVCITADVKLGGDAIRNGDSEGAKQSLASEDGYVESPSPAGFKVFV 2232
PEFPLDFFEKTVCITADVKLGGDA+RNGDSEGAK SL SEDG++ESPSPAGFK+ V
Sbjct: 3309 PEFPLDFFEKTVCITADVKLGGDAVRNGDSEGAKHSLVSEDGFLESPSPAGFKITV 3364
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147797429|emb|CAN75802.1| hypothetical protein VITISV_016976 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|449482228|ref|XP_004156220.1| PREDICTED: LOW QUALITY PROTEIN: auxin transport protein BIG-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|449447679|ref|XP_004141595.1| PREDICTED: auxin transport protein BIG-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|356567140|ref|XP_003551779.1| PREDICTED: auxin transport protein BIG-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|357502541|ref|XP_003621559.1| E3 ubiquitin-protein ligase UBR4 [Medicago truncatula] gi|355496574|gb|AES77777.1| E3 ubiquitin-protein ligase UBR4 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|124359893|gb|ABN07919.1| Zinc finger, N-recognin; WD40-like [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|90657637|gb|ABD96935.1| hypothetical protein [Cleome spinosa] | Back alignment and taxonomy information |
|---|
| >gi|297832860|ref|XP_002884312.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297330152|gb|EFH60571.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|30678519|ref|NP_186875.2| E3 ubiquitin-protein ligase UBR4 [Arabidopsis thaliana] gi|338817663|sp|Q9SRU2.2|BIG_ARATH RecName: Full=Auxin transport protein BIG; AltName: Full=Protein ATTENUATED SHADE AVOIDANCE 1; AltName: Full=Protein CORYMBOSA1; AltName: Full=Protein DARK OVER-EXPRESSION OF CAB 1; AltName: Full=Protein LOW PHOSPHATE-RESISTANT ROOT 1; AltName: Full=Protein TRANSPORT INHIBITOR RESPONSE 3; AltName: Full=Protein UMBRELLA 1 gi|332640264|gb|AEE73785.1| E3 ubiquitin-protein ligase UBR4 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2233 | ||||||
| TAIR|locus:2076487 | 5098 | BIG "BIG" [Arabidopsis thalian | 0.741 | 0.324 | 0.558 | 0.0 | |
| UNIPROTKB|B9G2A8 | 4965 | LOC_Os09g07294 "Auxin transpor | 0.568 | 0.255 | 0.497 | 0.0 | |
| DICTYBASE|DDB_G0283893 | 5875 | DDB_G0283893 "unknown" [Dictyo | 0.169 | 0.064 | 0.271 | 1.9e-69 | |
| RGD|1563121 | 5194 | Ubr4 "ubiquitin protein ligase | 0.139 | 0.060 | 0.269 | 1.7e-46 | |
| UNIPROTKB|Q2TL32 | 5194 | Ubr4 "E3 ubiquitin-protein lig | 0.139 | 0.060 | 0.269 | 1.7e-46 | |
| UNIPROTKB|F1P2G5 | 5201 | UBR4 "Uncharacterized protein" | 0.138 | 0.059 | 0.285 | 1.7e-46 | |
| ZFIN|ZDB-GENE-090313-341 | 5152 | ubr4 "ubiquitin protein ligase | 0.139 | 0.060 | 0.277 | 2e-46 | |
| MGI|MGI:1916366 | 5180 | Ubr4 "ubiquitin protein ligase | 0.139 | 0.060 | 0.269 | 7e-46 | |
| UNIPROTKB|Q5T4S7 | 5183 | UBR4 "E3 ubiquitin-protein lig | 0.139 | 0.060 | 0.266 | 5e-44 | |
| FB|FBgn0011230 | 5322 | poe "purity of essence" [Droso | 0.140 | 0.059 | 0.279 | 1.3e-43 |
| TAIR|locus:2076487 BIG "BIG" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4648 (1641.2 bits), Expect = 0., P = 0.
Identities = 942/1686 (55%), Positives = 1193/1686 (70%)
Query: 556 SSNCNMPMQAAVELLSFLKLCLFSHDWIPNVFEDGCKKLSRNHIDILLSLLNCQGCCTED 615
S + N+ +QAA ELL+FL+ C+ +W+P+++EDGCKKL HIDILL+++ GC ED
Sbjct: 551 SVSSNLLLQAAKELLNFLRACILCQEWVPSIYEDGCKKLDTGHIDILLNIV---GCSIED 607
Query: 616 KTSVSFTAPHGERKNGEIHQLCYELLNNLLTCHAFSDSLEAHLVECILNVESGVFVYNDQ 675
K S E + G + +ELL NLL A SD LE++L + IL VE+ F YND+
Sbjct: 608 KASDGGCMLQDEGRPGHV---AFELLLNLLRSRALSDFLESYLFQQILVVENSDFNYNDK 664
Query: 676 TLMLLARTLFCRVGLAGCNLRTKIYQRFVDFIVVKAKAVSSKCPSLKELLETLPSALHME 735
TL LLA TL CR GLAG LR KIY FV F+ +A+ + ++ SLKEL LPSA H+E
Sbjct: 665 TLALLAHTLLCRPGLAGAQLRAKIYDGFVSFVTERARGICAEALSLKELTACLPSAFHIE 724
Query: 736 ILLIAFYLSSEEEKAILANLIFSSLRAVDVSPEGFYS-TQLSCWALPVSRLIFLLRHMIF 794
ILL+AF+LS+E EKA +NLI S L VD +P G QLS WA+ +SRL+ LL HM+
Sbjct: 725 ILLMAFHLSNEAEKAKFSNLIASCLHKVD-TPAGICDGPQLSSWAMLISRLLVLLHHMLL 783
Query: 795 YPHNCPPSLLLDLRSKLREAPTCVSHMPSNAHDHLSSWASIAVKSVMGTSVEEEPVISNL 854
+P+ CP SL+LDLRSKLRE +C S++ DHLSSWAS+ + + + E+E V S+L
Sbjct: 784 HPNTCPTSLMLDLRSKLREVRSCGSNLHVTVGDHLSSWASLVARGITDSWAEDESV-SHL 842
Query: 855 INQLIDTAILPPLLSTDEPAIQSLCLNWGDMRETFSWILGLWKGRKAAAVEDLIVERYIF 914
++Q+ID + PP D ++L L++GD+ + +LGLWKG+KA VEDL+VERYIF
Sbjct: 843 MSQMIDFSPHPPTFQNDVSTAKTLNLDYGDLSASLCRVLGLWKGKKAGKVEDLLVERYIF 902
Query: 915 SLSWDIPTMGVTLDRQPSLLWESQTLDASNLGYFFLLSHLVPDQLNIAAKGQAFPGVVVS 974
LS DI + LD QPSL Q +D SN SHL+ +N+ + +++
Sbjct: 903 MLSSDIARINCALDSQPSLHVNYQNVDISNSVDLISTSHLLVGDINVVGRNIELRNILIG 962
Query: 975 VLQHLLAAHTPESI-DELGWDFLRNGXXXXXXXXXXNVGIRRYCMKNKVPGVGSLQTEST 1033
VL L AA PE + ++LGWD++R G + G+ YC KN + E T
Sbjct: 963 VLNQLQAA--PEQVVEDLGWDYIREGAWLSLLLYFLDGGVWDYCNKNSCSEIDPFWKECT 1020
Query: 1034 SWDTDYIIVADGLICSLIETGQVVVLFRWLSTLLSRYLQAYQKAFLATFDNSQCDANQFA 1093
S D Y+ A+G++ L++TG + L R LS+L+ +YL+ Y+KAFLATF + +
Sbjct: 1021 SVDAKYVAAAEGVVSYLMKTGDIAELLRMLSSLVGKYLRVYKKAFLATFSDWNHHGHSSP 1080
Query: 1094 SLLLLKHSGXXXXXXXXXXXXIGICSSQLESVFHLLLKVDEVVDKRALGILSKVFWECML 1153
SLLLLKH+ IG S L+ +F+L K+D + D R G+L KVFWE M+
Sbjct: 1081 SLLLLKHT-QFGKSLQGEYAKIGDNSLHLQCIFYLS-KLDSLGDGRGSGVLWKVFWEFMV 1138
Query: 1154 HGLPSHIRTPSGIFLSCVLSIRAIISALDGLLRMETLQVNVSLETEVLHQILDSVMVIKF 1213
HG P+ ++T S I LSC+LSIR I+ ++GLL++ + ++T VLHQ+LDS+M+IKF
Sbjct: 1139 HGFPTSLQTSSAILLSCILSIRCIVLTINGLLKLGNSKEKFGVDTSVLHQLLDSIMIIKF 1198
Query: 1214 DKIFESLHEKCAAIYCNLSAGLELADYSELFLMKNMEGYLTDISSREVSDSSILEWVVAK 1273
D++FES H KC I+ N+ A L+L D +ELFLMK+MEG++ DIS+ ++ S +LE V+ K
Sbjct: 1199 DQVFESFHGKCEEIHQNICAVLQLPDLTELFLMKDMEGFVRDISAEQIDRSQVLEGVITK 1258
Query: 1274 TIDTMDVLRKDPQKSLIFKFYLGAEDVAQQVKELYSLQRGDVLVLIDSLDSCYSELVNQK 1333
+D MD L KD KS IFKFYLG + V++ +E Y LQRGD+ V IDSLD C E VN K
Sbjct: 1259 IVDVMDSLSKDSSKSDIFKFYLGVDAVSEHTREFYELQRGDLSVFIDSLDYCSLEPVNIK 1318
Query: 1334 VLNFFVDLLSGDLCVFLKQKIQKKFLGMDLLPLSKWLEKRLLGSKMEMSGGVSSAKGTSV 1393
VLNF VDLLS L++++Q+KF+ MDL+ LS WLE+RLLGS +E G +AKG S+
Sbjct: 1319 VLNFLVDLLSVAQSPDLRRRVQQKFIDMDLISLSGWLERRLLGSFVEEIDGKKTAKGNSL 1378
Query: 1394 SLRESTMSFLLSLVSSPEDSQSRELHNHLFEAVLISLETAFTQFDIHIAKSYFHFVVQIS 1453
RE+ M+F+ LVSS D Q+REL NHLFEA+LISL+TAF FDIH++ SYFHFV+Q++
Sbjct: 1379 PFREAAMNFINCLVSSTNDLQTRELQNHLFEALLISLDTAFLSFDIHMSMSYFHFVLQLA 1438
Query: 1454 RGENSAKQLLKRIVMLMDKLAGDERXXXXXXXXXXXXANVLGDCGSFKSIPERPSGKSLS 1513
R +N K +LKR +MLM+KLA +E+ + G G+ S G+SL
Sbjct: 1439 REDNLMKMVLKRTIMLMEKLAAEEKLLPGLKF-------IFGVIGTLLSNRSPSHGESLC 1491
Query: 1514 GNSLIA-SSVASRPV-----GSRKNSDTLVLCASQEGGSLPLECDAXXXXXXXXXXXXXX 1567
G SL + + A+ P+ G+ K SDTL L QEG S+ LECD
Sbjct: 1492 GKSLASYKNTATGPLVPKLSGTTKKSDTLALPVDQEGSSISLECDVTSVDEDEDDGTSDG 1551
Query: 1568 XIASIDKDEEDDPNSERALASKVCTFTSSGSNFMEQHWYFCYTCDLTVSKGCCSVCAKVC 1627
+AS+DK++E+D NSER LASKVCTFTSSGSNFMEQHWYFCYTCDLTVSKGCCSVCAKVC
Sbjct: 1552 EVASLDKEDEEDANSERYLASKVCTFTSSGSNFMEQHWYFCYTCDLTVSKGCCSVCAKVC 1611
Query: 1628 HRGHRVVYSRSSRFFCDCGAGGVRGSSCQCLKPRKYTGSDSASSRAASNFQSFLPFTEDA 1687
HRGHRVVYSRSSRFFCDCGAGGVRGSSCQCLKPRKY G+ SA +R +NFQSFLP +EDA
Sbjct: 1612 HRGHRVVYSRSSRFFCDCGAGGVRGSSCQCLKPRKYNGNGSAPARGTNNFQSFLPLSEDA 1671
Query: 1688 DQLPESDSDLDEDASTDTDISSLRLSIPRELQDGIAKLLEELDLEGQVLKLCSSLLPSIT 1747
DQL ESDSD++ED + + + L IP+E Q ++ LLEEL +E +VL+L SSLLPSIT
Sbjct: 1672 DQLGESDSDVEEDGFGEEN--HVVLYIPKETQYKMSLLLEELGIEDRVLELFSSLLPSIT 1729
Query: 1748 IRREANVSKDRQIILGNDKVLSYGVDLLQLKKAYKSGSLDLKIKADYSNARELKSHXXXX 1807
+R++ +SK++Q+ LG DKVLS+ DLLQLKKAYKSGSLDLKIKADY+N+++LKS
Sbjct: 1730 SKRDSGLSKEKQVNLGKDKVLSFDTDLLQLKKAYKSGSLDLKIKADYTNSKDLKSLLANG 1789
Query: 1808 XXXXXXXXXXXXXXXXVGEGDKVAIFDVGQLIGQATIQPVTADKTNVKPLSRNIVRFEIV 1867
VGEGDKVAIFDVGQLIGQATI P+ ADK NVKPLSRNIVRFEIV
Sbjct: 1790 SLVKSLLSVSVRGRLAVGEGDKVAIFDVGQLIGQATIAPINADKANVKPLSRNIVRFEIV 1849
Query: 1868 HLAFNSIVENYLTVAGYEDCQVLTLNPRGEVTDRLAIELALQGAYIRRVDWVPGSPVQLM 1927
HL+FN +VENYL VAG EDCQ+LTLN RGEV DRLA+ELALQGA+IRR+DWVPGS VQLM
Sbjct: 1850 HLSFNPVVENYLAVAGLEDCQILTLNHRGEVIDRLAVELALQGAFIRRIDWVPGSQVQLM 1909
Query: 1928 VVTNKFVKIYDLSQDNISPLHYFTLPDDMIVDATLVIASRGKMFLIVLSECGSLYRLELS 1987
VVTNKFVKIYDLSQD+ISP YFTLP+DMIVDATL +ASRG++FL+VLSE G+LYR ELS
Sbjct: 1910 VVTNKFVKIYDLSQDSISPTQYFTLPNDMIVDATLFVASRGRVFLLVLSEQGNLYRFELS 1969
Query: 1988 VEGNVGATPLKEIIQFNDREIHAKGLSLYFSSTYKLLFLSFQDGTTLVGRLSPNAASLSE 2047
GN GATPLKEI+Q +++ KG S+YFS TY+LLF+S+ DG++ +GRLS +A SL++
Sbjct: 1970 WGGNAGATPLKEIVQIMGKDVTGKGSSVYFSPTYRLLFISYHDGSSFMGRLSSDATSLTD 2029
Query: 2048 VSYVFEEQ-DGKLRSAGLHRWKELLASSGLFFCFSSLKSNAAVAVSLGTNELIAQNMRHA 2106
S +FEE+ D K R AGLHRWKELLA SGLF CFSS+KSNA +AVSL + + AQN+RH
Sbjct: 2030 TSGMFEEESDCKQRVAGLHRWKELLAGSGLFICFSSVKSNAVLAVSLRGDGVCAQNLRHP 2089
Query: 2107 AGSTSPLVGVTAYKPLSKDKVHCLVLHDDGSLQIYSHVPHGVDAATSVTAEKVKKLGSNI 2166
GS+SP+VG+TAYKPLSKD VHCLVLHDDGSLQIYSHV GVD ++ TAEKVKKLGS I
Sbjct: 2090 TGSSSPMVGITAYKPLSKDNVHCLVLHDDGSLQIYSHVRSGVDTDSNFTAEKVKKLGSKI 2149
Query: 2167 LNNKAYAGTKPEFPLDFFEKTVCITADVKLGGDAIRNGDSEGAKQSLASEDGYVESPSPA 2226
LNNK YAG KPEFPLDFFE+ CITADV+LG DAIRNGDSEGAKQSLASEDG++ESPSP
Sbjct: 2150 LNNKTYAGAKPEFPLDFFERAFCITADVRLGSDAIRNGDSEGAKQSLASEDGFIESPSPV 2209
Query: 2227 GFKVFV 2232
GFK+ V
Sbjct: 2210 GFKISV 2215
|
|
| UNIPROTKB|B9G2A8 LOC_Os09g07294 "Auxin transport protein BIG" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0283893 DDB_G0283893 "unknown" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| RGD|1563121 Ubr4 "ubiquitin protein ligase E3 component n-recognin 4" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q2TL32 Ubr4 "E3 ubiquitin-protein ligase UBR4" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1P2G5 UBR4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-090313-341 ubr4 "ubiquitin protein ligase E3 component n-recognin 4" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1916366 Ubr4 "ubiquitin protein ligase E3 component n-recognin 4" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5T4S7 UBR4 "E3 ubiquitin-protein ligase UBR4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| FB|FBgn0011230 poe "purity of essence" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2233 | |||
| smart00396 | 71 | smart00396, ZnF_UBR1, Putative zinc finger in N-re | 4e-14 | |
| pfam02207 | 71 | pfam02207, zf-UBR, Putative zinc finger in N-recog | 4e-14 |
| >gnl|CDD|197698 smart00396, ZnF_UBR1, Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 4e-14
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 6/71 (8%)
Query: 1589 KVCTFTSSGSNFMEQHWYFCYTCDLTVSKGCCSVCA-KVCHRGHRVVYSRSSR-FFCDCG 1646
VC + +G + Y C TC L + CS C CH+GH V S CDCG
Sbjct: 1 DVCGYKFTGGEVI----YRCKTCGLDPTCVLCSDCFRPSCHKGHDVSLKTSRGSGICDCG 56
Query: 1647 AGGVRGSSCQC 1657
+C
Sbjct: 57 DKEAWNEDLKC 67
|
Domain is involved in recognition of N-end rule substrates in yeast Ubr1p. Length = 71 |
| >gnl|CDD|216929 pfam02207, zf-UBR, Putative zinc finger in N-recognin (UBR box) | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2233 | |||
| KOG2752 | 345 | consensus Uncharacterized conserved protein, conta | 99.42 | |
| KOG1777 | 625 | consensus Putative Zn-finger protein [General func | 99.36 | |
| KOG0943 | 3015 | consensus Predicted ubiquitin-protein ligase/hyper | 99.23 | |
| PF02207 | 71 | zf-UBR: Putative zinc finger in N-recognin (UBR bo | 99.21 | |
| smart00396 | 71 | ZnF_UBR1 Putative zinc finger in N-recognin, a rec | 98.99 | |
| KOG1776 | 1110 | consensus Zn-binding protein Push [Signal transduc | 98.97 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 97.9 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 97.71 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 97.62 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 96.96 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 96.95 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 96.61 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 96.33 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 96.09 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 95.79 | |
| PTZ00421 | 493 | coronin; Provisional | 95.19 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 93.2 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 92.89 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 92.87 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 92.72 | |
| PTZ00421 | 493 | coronin; Provisional | 92.51 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 91.36 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 91.15 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 90.82 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 90.62 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 90.27 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 89.21 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 88.78 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 87.85 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 87.84 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 87.68 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 87.14 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 86.48 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 86.28 | |
| PTZ00420 | 568 | coronin; Provisional | 85.83 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 85.79 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 85.6 | |
| PTZ00420 | 568 | coronin; Provisional | 85.36 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 84.81 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 84.29 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 84.15 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 82.81 |
| >KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.5e-14 Score=161.86 Aligned_cols=102 Identities=26% Similarity=0.573 Sum_probs=81.2
Q ss_pred CCCCCCcchhhcccCCCcceeccCCccc-ccceEeeccCCCCC-CceeehhhhhhhcCCCcEEEE-eecceeeecCCCCC
Q 047869 1574 KDEEDDPNSERALASKVCTFTSSGSNFM-EQHWYFCYTCDLTV-SKGCCSVCAKVCHRGHRVVYS-RSSRFFCDCGAGGV 1650 (2233)
Q Consensus 1574 ~~~~~~~~~e~al~~~~CTFt~TG~~fi-~Q~~Y~C~TC~l~~-~~GVC~aCA~vCHkGHdVvyl-~k~~FfCDCGa~~~ 1650 (2233)
+.++..+-+..+.+.+.|||. ++|+ ||.+|.|+||.+.. ..|||++|+..||.||+++++ ++|+|+||||+.++
T Consensus 26 ~lE~~a~~vL~~~~~~~CTy~---~Gy~~rQ~l~sClTC~P~~~~agvC~~C~~~CH~~H~lveL~tKR~FrCDCg~sk~ 102 (345)
T KOG2752|consen 26 ELEDEADVVLGTQNPDVCTYA---KGYKKRQALFSCLTCTPAPEMAGVCYACSLSCHDGHELVELYTKRNFRCDCGNSKF 102 (345)
T ss_pred HHHHHHHhhcCCCCCcccccc---cCcccccceeEeecccCChhhceeEEEeeeeecCCceeeeccccCCcccccccccc
Confidence 333445556667788999999 5566 89999999999975 789999999999999999999 99999999999998
Q ss_pred CCCCceeCCCCCCCCCCCccccccCcccccC
Q 047869 1651 RGSSCQCLKPRKYTGSDSASSRAASNFQSFL 1681 (2233)
Q Consensus 1651 ~~~~Cqclk~r~~~~~~~as~r~s~nf~~~~ 1681 (2233)
...+|.++...... ...+.+++||++.+
T Consensus 103 g~~sc~l~~~~~~~---n~~N~YNhNfqG~~ 130 (345)
T KOG2752|consen 103 GRCSCNLLEDKDAE---NSENLYNHNFQGLF 130 (345)
T ss_pred cccccccccccccc---cchhhhhhhhccee
Confidence 77667665432111 33567889999876
|
|
| >KOG1777 consensus Putative Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF02207 zf-UBR: Putative zinc finger in N-recognin (UBR box); InterPro: IPR003126 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >smart00396 ZnF_UBR1 Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway | Back alignment and domain information |
|---|
| >KOG1776 consensus Zn-binding protein Push [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 83.4 bits (205), Expect = 8e-16
Identities = 111/718 (15%), Positives = 228/718 (31%), Gaps = 207/718 (28%)
Query: 820 HMPSNAHDHLSSWASIAVKSVMGTSVEEEPVISNL-INQLIDTAILPPLLSTDEPAIQSL 878
HM +H + I SV E+ + N + D + +LS +E I +
Sbjct: 6 HMDFETGEHQYQYKDI-------LSVFEDAFVDNFDCKDVQD--MPKSILSKEE--IDHI 54
Query: 879 CLNWGD----MRETFSWILGLWKGRKAAA--VEDLIVERYIFSLSWDIPTMGVTLDRQPS 932
+ D F W L L K + VE+++ Y + + + T RQPS
Sbjct: 55 -IMSKDAVSGTLRLF-WTL-LSKQEEMVQKFVEEVLRINY----KF-LMSPIKTEQRQPS 106
Query: 933 L---LWESQTLDASNLGYFFLLSHLVP-----DQLNIAAKG-QAFPGVVV--------SV 975
+ ++ Q N F + V +L A + V++ +
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYN-VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165
Query: 976 LQHLLAAHTPESID-ELGWDFLRNGSWLSLVLSLLNVGIRRYCMKNKVPGVGSLQTESTS 1034
+ A S + DF WL+L N ++ LQ
Sbjct: 166 V----ALDVCLSYKVQCKMDF--KIFWLNLK----NCNSPETVLEM-------LQKLLYQ 208
Query: 1035 WDTDYIIVADGLICSLIETGQVVVLFRWLSTLLSRYLQA--YQKAFL-----------AT 1081
D ++ +D + + + L R L++ Y+ L
Sbjct: 209 IDPNWTSRSDHSS-------NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 1082 FDNSQCDANQFASLLLLKHSGLEKCLEDELLEKIGICSSQLESVFHLLLKVDEVVDKRAL 1141
F+ C +LL K + D L S+ + L +
Sbjct: 262 FNL-SC------KILLTTR---FKQVTDFL-------SAATTTHISLDHHSMTLTPDEVK 304
Query: 1142 GILSKVFWECMLHGLPSHIRT--PSGIFLSCVLSIRAIISAL--DGLLRMETLQVNVSLE 1197
+L K +C LP + T P + +II+ DGL + + +
Sbjct: 305 SLLLKYL-DCRPQDLPREVLTTNP--------RRL-SIIAESIRDGLATWDNWK---HVN 351
Query: 1198 TEVLHQILDSVMVIKFDKIFESLHEKCAAIYCNLSAGLELADYSELF-----LMKNMEGY 1252
+ L I++S SL+ LE A+Y ++F +
Sbjct: 352 CDKLTTIIES-----------SLNV------------LEPAEYRKMFDRLSVFPPS---- 384
Query: 1253 LTDISSREVSDSSILEWVVAKTIDTMDVLRKDPQKSLIFKFYLGAEDVAQQVKELYSLQR 1312
I + +S ++ W D M V+ K + SL+ K + + S+
Sbjct: 385 -AHIPTILLS---LI-WFDVIKSDVMVVVNKLHKYSLVEK------QPKESTISIPSIYL 433
Query: 1313 GDVLVLIDSLDSCYSELVNQKVL-------NFFVDLLSGDLCVF----LKQKIQ-KKFLG 1360
++ V +++ + + +V+ + + L LK ++
Sbjct: 434 -ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 1361 MDLLPLS-KWLEKRLLGSKMEMSGGVSSAKGTSVSLRESTMSFLLSLVSSPEDSQSRELH 1419
++ L ++LE+++ T+ + S ++ L L +
Sbjct: 493 FRMVFLDFRFLEQKI------------RHDSTAWNASGSILNTLQQL---------KFYK 531
Query: 1420 NHL------FEAVLISLETAFTQFDIHIAKSYFHFVVQIS-RGENS------AKQLLK 1464
++ +E ++ ++ + + ++ S + +++I+ E+ KQ+ +
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A Length = 75 | Back alignment and structure |
|---|
| >3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A Length = 82 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2233 | |||
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 98.46 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 98.42 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 98.31 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 98.11 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 98.11 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 98.1 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 98.05 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 97.97 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 97.94 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 97.92 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 97.9 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 97.88 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.83 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 97.81 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 97.79 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 97.79 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 97.76 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 97.74 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 97.71 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 97.69 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 97.68 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.64 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 97.63 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 97.6 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 97.59 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 97.57 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 97.55 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.53 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 97.5 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 97.48 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 97.48 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 97.48 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 97.46 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 97.45 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 97.44 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 97.43 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 97.42 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 97.41 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 97.4 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 97.36 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 97.36 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 97.36 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 97.34 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 97.29 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 97.29 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 97.27 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 97.27 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 97.26 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 97.25 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 97.23 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 97.19 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 97.19 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 97.18 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 97.13 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 97.13 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 97.09 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 97.09 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 97.07 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 97.05 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 97.03 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 97.03 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 97.02 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 97.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 96.97 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 96.97 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 96.93 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 96.92 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 96.83 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 96.83 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 96.82 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 96.75 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 96.75 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 96.75 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 96.74 | |
| 3ny3_A | 75 | E3 ubiquitin-protein ligase UBR2; zinc finger-like | 96.71 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 96.68 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 96.66 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 96.66 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 96.64 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 96.64 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 96.61 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 96.57 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 96.56 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 96.54 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 96.54 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 96.51 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 96.51 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 96.51 | |
| 3nis_A | 82 | E3 ubiquitin-protein ligase UBR1; E3 ubiquitin lig | 96.39 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 96.37 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 96.37 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 96.32 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 96.29 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 96.24 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 96.18 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 96.16 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 96.16 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 96.03 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 95.99 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 95.91 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 95.87 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 95.84 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 95.82 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 95.72 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 95.72 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 95.71 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 95.66 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 95.52 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 95.48 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 95.41 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 95.38 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 95.31 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 95.24 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 95.02 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 95.02 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 95.02 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 94.9 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 94.89 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 94.76 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 94.67 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 94.42 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 94.36 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 94.35 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 94.23 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 94.19 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 94.18 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 94.1 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 94.01 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 93.95 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 93.81 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 93.44 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 93.08 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 92.98 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 92.96 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 92.92 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 92.89 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 92.72 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 92.6 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 92.5 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 92.44 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 92.01 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 91.65 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 91.48 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 90.71 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 90.49 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 89.55 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 89.51 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 89.42 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 88.07 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 87.94 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 86.89 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 86.71 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 86.7 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 86.07 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 84.76 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 82.86 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 81.84 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 81.77 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 81.73 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 81.3 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 80.26 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 80.15 |
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=98.46 E-value=0.00018 Score=75.91 Aligned_cols=170 Identities=12% Similarity=0.143 Sum_probs=110.4
Q ss_pred EEEEeecccCccceEEeeccc-ceEEEEecCCCceeeeeeeeeccCCceEEEeEEecCC-CceEEEEecC-eEEEEeCcC
Q 047869 1865 EIVHLAFNSIVENYLTVAGYE-DCQVLTLNPRGEVTDRLAIELALQGAYIRRVDWVPGS-PVQLMVVTNK-FVKIYDLSQ 1941 (2233)
Q Consensus 1865 eVlsLafNP~nEdyLAVcGLk-DC~VLTfss~GeV~DRL~LeL~Leg~fIIKa~WLPGS-Qt~LAVVT~~-FVKIYDLS~ 1941 (2233)
.|..|+|+| ++++||++|.. .+.|..+...... -++.-.+.-....|..+.|.|.. ...|+..+.+ .|+|||+..
T Consensus 13 ~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~ 90 (351)
T 3f3f_A 13 LVHDVVYDF-YGRHVATCSSDQHIKVFKLDKDTSN-WELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDP 90 (351)
T ss_dssp CEEEEEECS-SSSEEEEEETTSEEEEEEECSSSCC-EEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECT
T ss_pred ceeEEEEcC-CCCEEEEeeCCCeEEEEECCCCCCc-ceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCC
Confidence 478999999 78899988864 4667777543322 12222222336679999999952 3457776665 899999987
Q ss_pred CCC-------CCcEEEEcCCCCeeEEEEEEecCCcEEEEEEecCCceEEEEecccCCCccccceeeeec---ccccccCC
Q 047869 1942 DNI-------SPLHYFTLPDDMIVDATLVIASRGKMFLIVLSECGSLYRLELSVEGNVGATPLKEIIQF---NDREIHAK 2011 (2233)
Q Consensus 1942 D~l-------SPvyyF~LpsGkIrDaTfv~~e~G~~~ILVLSS~G~LY~Qels~s~d~g~~~ltEvvq~---~~~q~~~~ 2011 (2233)
... .+...+.-..+.|.+++|-....| .+++..+.+|.|+.-++........+.+...... ........
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (351)
T 3f3f_A 91 DQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQS 169 (351)
T ss_dssp TSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCC
T ss_pred CcccccccCcceeeeecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccc
Confidence 654 346666667788998886543225 4677888999999998875443333333332221 11122344
Q ss_pred eEEEEeccc---cceeeEEecCCcEEEEE
Q 047869 2012 GLSLYFSST---YKLLFLSFQDGTTLVGR 2037 (2233)
Q Consensus 2012 GVSVyYS~t---l~LLF~SY~~G~Sf~a~ 2037 (2233)
..++.|++. -++|.++..+|..+.-.
T Consensus 170 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~~ 198 (351)
T 3f3f_A 170 DFCLSWCPSRFSPEKLAVSALEQAIIYQR 198 (351)
T ss_dssp CEEEEECCCSSSCCEEEEEETTEEEEEEE
T ss_pred eeEEEeccCCCCCcEEEEecCCCcEEEEc
Confidence 667888886 77888888777765433
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A | Back alignment and structure |
|---|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
| >3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A | Back alignment and structure |
|---|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
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| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2233 | |||
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.15 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 98.05 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 98.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 97.74 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 97.72 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 97.49 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 97.3 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 97.19 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 97.18 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 97.15 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 97.09 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 96.92 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 96.86 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 96.8 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 96.79 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 96.61 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 96.53 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 96.18 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 96.12 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 96.09 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 95.93 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 95.61 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 95.11 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 94.88 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 94.58 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 93.81 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 93.17 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 91.41 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 89.76 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 86.41 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 82.95 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 81.96 |
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.15 E-value=0.0021 Score=68.59 Aligned_cols=194 Identities=11% Similarity=0.115 Sum_probs=122.7
Q ss_pred ceeccc-CceEEEeeCCeEEEEechhhhcccccCCccccccccccccccccceEEEEeecccCccceEEeeccc-ceEEE
Q 047869 1813 LLSVSS-RGRLAVGEGDKVAIFDVGQLIGQATIQPVTADKTNVKPLSRNIVRFEIVHLAFNSIVENYLTVAGYE-DCQVL 1890 (2233)
Q Consensus 1813 LLSas~-rGrLAVaEgdKVTILqlsaLLkQad~s~~skdKlTLtrLSsa~VpFeVlsLafNP~nEdyLAVcGLk-DC~VL 1890 (2233)
+|+.+. +.++|.+.++.|.++++...-....... =.-.|..++|+| +++|||++|.. .++|.
T Consensus 22 ~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~~---------------H~~~v~~~~~sp-~g~~latg~~dg~i~iw 85 (311)
T d1nr0a1 22 VLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTE---------------HSHQTTVAKTSP-SGYYCASGDVHGNVRIW 85 (311)
T ss_dssp CCEECTTSSEEEEEETTEEEEEETTCSSCCEEECC---------------CSSCEEEEEECT-TSSEEEEEETTSEEEEE
T ss_pred EEEEcCCCCEEEEEeCCEEEEEECCCCceeEEEcC---------------CCCCEEEEEEeC-CCCeEeccccCceEeee
Confidence 566665 4568888999999998854321111100 013488999999 78999887764 34444
Q ss_pred EecCCCceeeeeeeeeccCCceEEEeEEecCCCceEEEEec---CeEEEEeCcCCCCCCcEEEEcCCCCeeEEEEEEecC
Q 047869 1891 TLNPRGEVTDRLAIELALQGAYIRRVDWVPGSPVQLMVVTN---KFVKIYDLSQDNISPLHYFTLPDDMIVDATLVIASR 1967 (2233)
Q Consensus 1891 Tfss~GeV~DRL~LeL~Leg~fIIKa~WLPGSQt~LAVVT~---~FVKIYDLS~D~lSPvyyF~LpsGkIrDaTfv~~e~ 1967 (2233)
-+...+.+. +. .+..-..-|..+.|-|.++. |+++.. .+++|||+.... +...+.-..+.|.++.| .++
T Consensus 86 d~~~~~~~~-~~--~~~~~~~~v~~v~~s~d~~~-l~~~~~~~~~~~~v~~~~~~~--~~~~l~~h~~~v~~v~~--~~~ 157 (311)
T d1nr0a1 86 DTTQTTHIL-KT--TIPVFSGPVKDISWDSESKR-IAAVGEGRERFGHVFLFDTGT--SNGNLTGQARAMNSVDF--KPS 157 (311)
T ss_dssp ESSSTTCCE-EE--EEECSSSCEEEEEECTTSCE-EEEEECCSSCSEEEEETTTCC--BCBCCCCCSSCEEEEEE--CSS
T ss_pred eeecccccc-cc--ccccccCccccccccccccc-ccccccccccccccccccccc--ccccccccccccccccc--ccc
Confidence 443332221 11 12222456889999998765 555543 469999997554 44555555677888774 567
Q ss_pred CcEEEEEEecCCceEEEEecccCCCccccceeeeecccccccCCeEEEEeccccceeeEEecCCcEEEEEcCC
Q 047869 1968 GKMFLIVLSECGSLYRLELSVEGNVGATPLKEIIQFNDREIHAKGLSLYFSSTYKLLFLSFQDGTTLVGRLSP 2040 (2233)
Q Consensus 1968 G~~~ILVLSS~G~LY~Qels~s~d~g~~~ltEvvq~~~~q~~~~GVSVyYS~tl~LLF~SY~~G~Sf~a~Ls~ 2040 (2233)
|.+.++..+.+|.|+..+++... ...... ...+.--++.+++.-++|...-.+|+..+-.+..
T Consensus 158 ~~~~l~sgs~d~~i~i~d~~~~~------~~~~~~----~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~ 220 (311)
T d1nr0a1 158 RPFRIISGSDDNTVAIFEGPPFK------FKSTFG----EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD 220 (311)
T ss_dssp SSCEEEEEETTSCEEEEETTTBE------EEEEEC----CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ceeeecccccccccccccccccc------cccccc----cccccccccccCcccccccccccccccccccccc
Confidence 87777778899999988776211 111111 1122345788999999988888888887766543
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|