Citrus Sinensis ID: 047903

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430
Protein Sequence
MEKPLGLWYFKYCRLPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKDLELLINRGFVDTRKRGAGGTINTCSVHGRCRPVLLSVAFEAKFVFFPFGDPKGKSRKNVKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQLELRQKLREFEDKEQYGIQLYPYGI
Secondary Structure (PSIPRED)
ccHHHHHHHcccccccccHHHHHHHcccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHcccEEEEEcccccEEEEEEEcHHHHHHHHHHHHHcccEEEEcccccccccccEEEEEEEcccccccccccccccEEEEEEEccccccccccccccccccccEEEEccccccccccccccccccccEEEccccccccccHHHHccccccEEEEccccccccccccccccccccEEcccccccHHHHHHcccccccEEEEEEcccccHHHHHHHHHccccccEEEEEcccccccccccccccccccccccEEEEEccccccccccccccccEEEEcccccccccEEEEEccccccEEEEcccccccccEEEEEEccccccccccccccccccEEEEEcccHHHHHHHHHccccccccEEEccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHccHHHcccccccHEEEEEcccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHccEEEEEEccccccEcEEcHHHHHHHHHHHHHHHcccEEEEcccccccccccEEEEEEEcccccccccccccccEEEEEEEccccccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHEccccccHHHccHHHHHHHHHHHHEccccccccccccccccHHHccHEEEccccHHHHHHHHHHHHHHHEEEEcccHHcHHHHHHHHHHcHHccEEEEEccccccccccccccccccccccEEEEEEccccccccHHHHccccEEEEcccccHHcEEEEEcccccccEEEEcccccccccEEEEcccHHHHHcccHHHHHHHHHHEEEccccHHHHHHHcccccccEEEEEEccccc
Coil and Loop (DISEMBL)
mekplglwyfkycrlpfcLKLCFLYLSVFPAHLEISTRQLYQLWIAegfipdnseatAEKDLELLINrgfvdtrkrgaggtintcsvhgrcrpVLLSVAFEAkfvffpfgdpkgksrknvkrinvfekqsdfahlddydsHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLnipslkslpspllsnllnlytldmpfsyidHTADEFWKmnnlrhlnfgsitlpahprkycRSLENLNfisalhpccctedilgrlpnlrnlriWGDLSYYQSLLSQSLCTLTCLESLKlvseskmptlsKIVLVeyqfpprlthlsfsntelmedpksrasssrkltcgsdgfpnlkVLHLKSMLWLEEWtmgigampklecliinpcaylkkmpeqpwcikslnkfncwwpQLELRQKLREFEdkeqygiqlypygi
Flexible Loop (DISEMBL)
MEKPLGLWYFKYCRLPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKDLELLINRgfvdtrkrgaggtintcsvhgrCRPVLLSVAFEAKFVffpfgdpkgksrknvkrINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLThlsfsntelmedpksrasssrkltcgsdgfpnlKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQLELRQKLrefedkeqygiqlypygi
Low Complexity Region (SEG)
MEKPLGLWYFKYCRLPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKDLELLINRGFVDTRKRGAGGTINTCSVHGRCRPVLLSVAFEAKFVFFPFGDPKGKSRKNVKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLSGIENLFLLRYlklnipslkslpspllsnllnlYTLDMPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDlsyyqsllsqslctltcleslKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQLELRQKLREFEDKEQYGIQLYPYGI
Disordered region (IsUnstruct)
****LGLWYFKYCRLPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKDLELLINRGFVDTRKRGAGGTINTCSVHGRCRPVLLSVAFEAKFVFFPFGDP******NVKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLS*********************CGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQLELRQKLREFEDKEQYGIQLYP***
Disordered Region (DISOPRED)
*EKPLGLWYFKYCRLPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKDLELLINRGFVDTRKRGAGGTINTCSVHGRCRPVLLSVAFEAKFVFFPF*********NVKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQLEL***********QYGIQLYPYGI
Disordered Region (DISEMBL)
MEKPLGLWYFKYCRLPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKDLELLINRGFVDTRKRGAGGTINTCSVHGRCRPVLLSVAFEAKFVFFPFGDPKGKSRKNVKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTE***************TCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQLELRQKLREFEDKEQYGIQLYPYGI
Disordered Region (DISPRO)
MEKPLGLWYFKYCRLPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKDLELLINRGFVDTRKRGAGGTINTCSVHGRCRPVLLSVAFEAKFVFFPFGDPKGKSRKNVKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQLELRQKLREFEDKEQYGIQLYPYGI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKPLGLWYFKYCRLPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKDLELLINRGFVDTRKRGAGGTINTCSVHGRCRPVLLSVAFEAKFVFFPFGDPKGKSRKNVKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQLELRQKLREFEDKEQYGIQLYPYGI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	430	2.2.26 [Sep-21-2011]
Q9FJB5	901	Disease resistance RPP8-l	yes	no	0.909	0.433	0.253	7e-21
Q9FJK8	908	Probable disease resistan	no	no	0.944	0.447	0.269	2e-20
Q8W474	907	Probable disease resistan	no	no	0.876	0.415	0.271	2e-19
P59584	910	Disease resistance protei	no	no	0.927	0.438	0.253	2e-19
Q8W4J9	908	Disease resistance protei	no	no	0.925	0.438	0.251	9e-19
P0DI18	1049	Probable disease resistan	no	no	0.862	0.353	0.273	8e-17
P0DI17	1049	Probable disease resistan	no	no	0.862	0.353	0.273	8e-17
Q9M667	835	Disease resistance protei	no	no	0.793	0.408	0.28	2e-16
P0C8S1	906	Probable disease resistan	no	no	0.869	0.412	0.254	3e-16
P0DI16	1017	Probable disease resistan	no	no	0.895	0.378	0.247	1e-15

>sp|Q9FJB5|RP8L3_ARATH Disease resistance RPP8-like protein 3 OS=Arabidopsis thaliana GN=RPP8L3 PE=2 SV=1

 Score =  102 bits (253), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 121/477 (25%), Positives = 185/477 (38%), Gaps = 86/477 (18%)

Query: 12  YCRLPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKD-LELLINRGF 70
           Y  LP  LK CFLYL+ FP   +I TR LY  W AEG     +   + +D LE L+ R  
Sbjct: 410 YEDLPTDLKHCFLYLAHFPEDYKIKTRTLYSYWAAEGIYDGLTILDSGEDYLEELVRRNL 469

Query: 71  VDTRKRGAGGTINTCSVHGRCRPVLLSVAFEAKF---VFFPFGDPK--GKSRKNVKRINV 125
           V   K      +  C +H   R V +S A    F   +  P        +S    +R+ V
Sbjct: 470 VIAEKSNLSWRLKLCQMHDMMREVCISKAKVENFLQIIKVPTSTSTIIAQSPSRSRRLTV 529

Query: 126 FEKQSDFAHLDDYDSHMHSL------------------------VLDLGSL--------- 152
              ++   H+  +   + SL                        VLDL S+         
Sbjct: 530 HSGKA--FHILGHKKKVRSLLVLGLKEDLWIQSASRFQSLPLLRVLDLSSVKFEGGKLPS 587

Query: 153 ----------------VLIHYLSGIENLFLLRYLKLNIPSLKSLPSP-LLSNLLNLYTLD 195
                           V+ H  S I NL L+ YL L++     +  P +L  +L L  L 
Sbjct: 588 SIGGLIHLRFLSLHQAVVSHLPSTIRNLKLMLYLNLHVAIGVPVHVPNVLKEMLELRYLS 647

Query: 196 MPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILG 255
           +P    D T  E   + NL +L   S T  +      R  +   F  +    C  E++  
Sbjct: 648 LPLDMHDKTKLELGDLVNLEYLWCFS-TQHSSVTDLLRMTKLRFFGVSFSERCTFENLSS 706

Query: 256 RLPNLRNLR----IWGDLSYYQSLLSQSLCTLTCLESLKL-VSESKMPTLSKIVLVEYQF 310
            L   R L     I+   +Y    + + +     L+ L L V  SK+P        ++Q 
Sbjct: 707 SLRQFRKLETLSFIYSRKTYMVDYVGEFVLDFIHLKKLSLGVHLSKIPD-------QHQL 759

Query: 311 PPRLTHLSFSNTELMEDP---------------KSRASSSRKLTCGSDGFPNLKVLHLKS 355
           PP + H+      + EDP               + +A   R++ C   GFP L+ L +  
Sbjct: 760 PPHIAHIYLLFCHMEEDPMPILEKLLHLKSVELRRKAFIGRRMVCSKGGFPQLRALQISE 819

Query: 356 MLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQLELRQKL 412
              LEEW +  G+MP L  LII+ C  L+++P+    + SL +      + E ++KL
Sbjct: 820 QSELEEWIVEEGSMPCLRDLIIHSCEKLEELPDGLKYVTSLKELKIEGMKREWKEKL 876

Disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJK8|RP8L4_ARATH Probable disease resistance RPP8-like protein 4 OS=Arabidopsis thaliana GN=RPP8L4 PE=2 SV=1

 Score =  100 bits (249), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 133/494 (26%), Positives = 195/494 (39%), Gaps = 88/494 (17%)

Query: 12  YCRLPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNS-EATAEKDLELLINRGF 70
           Y  LP  LK  FLYL+ FP   +I T+ L+  W AEG    ++ + + E  LE L+ R  
Sbjct: 416 YEDLPTHLKHRFLYLAHFPEDSKIYTQDLFNYWAAEGIYDGSTIQDSGEYYLEELVRRNL 475

Query: 71  VDTRKRGAGGTINTCSVHGRCRPVLLSVAFEAKFVFFPFGDPKGKSRKNVK---RINVFE 127
           V    R      N C +H   R V LS A E  F+     DP   S  N +   R   F 
Sbjct: 476 VIADNRYLSLEFNFCQMHDMMREVCLSKAKEENFLQI-IKDPTSTSTINAQSPSRSRRFS 534

Query: 128 KQSDFA-HLDDYDSH--MHSLVLD-------LGSLVLIHYL------------------- 158
             S  A H+  + ++  + SL++        + S  + H L                   
Sbjct: 535 IHSGKAFHILGHRNNPKVRSLIVSRFEEDFWIRSASVFHNLTLLRVLDLSRVKFEGGKLP 594

Query: 159 SGIENLFLLRYLKLNIPSLKSLPSPL------------------------LSNLLNLYTL 194
           S I  L  LRYL L    +  LPS +                        L  +L L  L
Sbjct: 595 SSIGGLIHLRYLSLYGAVVSHLPSTMRNLKLLLFLNLRVDNKEPIHVPNVLKEMLELRYL 654

Query: 195 DMPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDIL 254
            +P    D T  E   + NL +L + S T  +      R  +  N   +L   C  E + 
Sbjct: 655 SLPQEMDDKTKLELGDLVNLEYLWYFS-TQHSSVTDLLRMTKLRNLGVSLSERCNFETLS 713

Query: 255 GRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRL 314
             L  LRNL +   L   + ++   +        + L        +SKI   ++QFPP L
Sbjct: 714 SSLRELRNLEMLNVLFSPEIVMVDHMGEFVLDHFIHLKQLGLAVRMSKIP-DQHQFPPHL 772

Query: 315 THLSFSNTELMEDP----------KSRASS-----SRKLTCGSDGFPNLKVLHLKSMLWL 359
            H+   +  + EDP          KS A S      R++ C   GFP L  L +     L
Sbjct: 773 AHIHLVHCVMKEDPMPILEKLLHLKSVALSYGAFIGRRVVCSKGGFPQLCALGISGESEL 832

Query: 360 EEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQLELRQKLREFEDK- 418
           EEW +  G+MP L  L I+ C  LK++P+    I SL        +L++R+  RE+++K 
Sbjct: 833 EEWIVEEGSMPCLRTLTIHDCEKLKELPDGLKYITSLK-------ELKIREMKREWKEKL 885

Query: 419 -----EQYGIQLYP 427
                + Y +Q  P
Sbjct: 886 VPGGEDYYKVQHIP 899

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W474|DRL7_ARATH Probable disease resistance protein At1g58390 OS=Arabidopsis thaliana GN=At1g58390 PE=2 SV=4

 Score = 97.1 bits (240), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 127/468 (27%), Positives = 178/468 (38%), Gaps = 91/468 (19%)

Query: 12  YCRLPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIP-------DNSEATAEKDLEL 64
           +  LP  LK CFLYL+ FP   +I+  +L   W AEG          +  +   +  LE 
Sbjct: 413 FEELPSYLKHCFLYLAHFPEDHKINVEKLSYCWAAEGISTAEDYHNGETIQDVGQSYLEE 472

Query: 65  LINRGFVDTRKRGAGGTINTCSVHGRCRPVLLSVAFEAKFVFFPF------GDPKGKSRK 118
           L+ R  +   +        TC +H   R V L  A E  F+              G S+ 
Sbjct: 473 LVRRNMIIWERDATASRFGTCHLHDMMREVCLFKAKEENFLQIAVKSVGVTSSSTGNSQS 532

Query: 119 NVKRINVFEKQSDFAHL--DDYDSHMHSLVL---------------DLGSLVLIHYLS-- 159
             +   +  +     H+  D  +  + SLV+                   L L+  L   
Sbjct: 533 PCRSRRLVYQCPTTLHVERDINNPKLRSLVVLWHDLWVENWKLLGTSFTRLKLLRVLDLF 592

Query: 160 -----------GIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLY-TLDMPFSYIDHTADE 207
                      GI NL  LRYL L    +  LPS L + +L +Y  LD+   +I    D 
Sbjct: 593 YVDFEGMKLPFGIGNLIHLRYLSLQDAKVSHLPSSLGNLMLLIYLNLDVDTEFI-FVPDV 651

Query: 208 FWKMNNLRHLNFGSITLPAHPRKYCR-------SLENLNFISALHPCCCTEDILGRLPNL 260
           F +M+ LR+L      LP H  K  R        LE L + S  H    ++D+ G +  L
Sbjct: 652 FMRMHELRYLK-----LPLHMHKKTRLSLRNLVKLETLVYFSTWHS--SSKDLCG-MTRL 703

Query: 261 RNLRIWGDLSYYQSLLSQSLCTLTCLESLKLV-SESKMPTLSKIVL-------------- 305
             L I          LS S+  L  LE L +V + SK      IVL              
Sbjct: 704 MTLAIRLTRVTSTETLSASISGLRNLEYLYIVGTHSKKMREEGIVLDFIHLKHLLLDLYM 763

Query: 306 -VEYQFPPRLTHLSFSNTELMEDPK---------------SRASSSRKLTCGSDGFPNLK 349
             +  FP RLT +  S   L EDP                  +   R++ C   GFP LK
Sbjct: 764 PRQQHFPSRLTFVKLSECGLEEDPMPILEKLLHLKGVILLKGSYCGRRMVCSGGGFPQLK 823

Query: 350 VLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLN 397
            L +  +   EEW +  G+MP LE L I  C  LK++P+    I SL 
Sbjct: 824 KLEIVGLNKWEEWLVEEGSMPLLETLSILDCEELKEIPDGLRFIYSLE 871

Possible disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P59584|RP8HA_ARATH Disease resistance protein RPH8A OS=Arabidopsis thaliana GN=RPH8A PE=3 SV=1

 Score = 97.1 bits (240), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 120/474 (25%), Positives = 191/474 (40%), Gaps = 75/474 (15%)

Query: 12  YCRLPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNS-EATAEKDLELLINRGF 70
           Y  LP  LK CFL+L+ +P   +I T+ L+  W AEG    ++ + + E  LE L+ R  
Sbjct: 416 YEDLPTHLKHCFLHLAHYPEDSKIYTQDLFNYWAAEGIYDGSTIQDSGEYYLEELVRRNL 475

Query: 71  V--DTRKRGAGGTINTCSVHGRCRPVLLSVAFEAKFVFFPFGDPKGKSRKNV------KR 122
           V  D R   +   I  C +H   R V LS A E  F+     DP   S  N       +R
Sbjct: 476 VIADNRYLISEFKIKNCQMHDMMREVCLSKAKEENFLQI-IKDPTCTSTINAQSPSRSRR 534

Query: 123 INVFEKQSDFAHLDDYDSHMHSLVLD-------LGSLVLIHYLS---------------- 159
           +++   ++        ++ + SL++        + S  + H L+                
Sbjct: 535 LSIHSGKAFHILGHKRNAKVRSLIVSRFEEDFWIRSASVFHNLTLLRVLDLSWVKFEGGK 594

Query: 160 ---GIENLFLLRYLKLNIPSLKSLPSPL-LSNLLNLYTLDMPFSYIDHTADEFWKMNNLR 215
               I  L  LRYL+L    +  LPS +    LL    L +    + H  +   +M  LR
Sbjct: 595 LPCSIGGLIHLRYLRLYGAVVSHLPSTMRNLKLLLYLNLSVHNEDLIHVPNVLKEMIELR 654

Query: 216 HLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSL 275
           +L+   + +    +     L NL ++        +   L R+  LRNL +     Y    
Sbjct: 655 YLSI-PVKMDDKTKLELGDLVNLEYLYGFSTQHTSVTDLLRMTKLRNLTVSLSERYNFKT 713

Query: 276 LSQSLCTLTCLESLKLVSESK-----------------MPTLSKIVLV-----EYQFPPR 313
           LS SL  L  LE+L ++   K                 +  L  +V +     ++QFPP 
Sbjct: 714 LSSSLRELRNLETLYVLFSRKTYMVDHMGEFVLDHFIHLKELGLVVRMSKIPDQHQFPPH 773

Query: 314 LTHLSFSNTELMEDP---------------KSRASSSRKLTCGSDGFPNLKVLHLKSMLW 358
           L H+      + EDP               + +A   R++ C  DGF  L  L +     
Sbjct: 774 LVHIFLFYCGMEEDPMPILEKLHHLKSVQLRYKAFVGRRMVCSKDGFTQLCALDISKQSE 833

Query: 359 LEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQLELRQKL 412
           LE+W +  G+MP L  L I+ C  LK++P+    I SL +      + E ++KL
Sbjct: 834 LEDWIVEEGSMPCLRTLTIHDCEKLKELPDGLKYITSLKELKIEGMKREWKEKL 887

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. In contrast to RPP8, it does not specifically recognize the Emco5 avirulence protein from Hyaloperonospora parasitica.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W4J9|RPP8_ARATH Disease resistance protein RPP8 OS=Arabidopsis thaliana GN=RPP8 PE=1 SV=2

 Score = 95.1 bits (235), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 119/473 (25%), Positives = 176/473 (37%), Gaps = 75/473 (15%)

Query: 12  YCRLPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNS-EATAEKDLELLINRGF 70
           Y  LP  LK CFL L+ FP   EIST  L+  W AEG    ++ E + E  LE L+ R  
Sbjct: 416 YEDLPTHLKHCFLNLAHFPEDSEISTYSLFYYWAAEGIYDGSTIEDSGEYYLEELVRRNL 475

Query: 71  VDTRKRGAGGTINTCSVHGRCRPVLLSVAFEAKFVFFPFGDPKGKSRKNV------KRIN 124
           V             C +H   R V LS A E  F+     DP   S  N       +R++
Sbjct: 476 VIADDNYLSWQSKYCQMHDMMREVCLSKAKEENFLQIII-DPTCTSTINAQSPSRSRRLS 534

Query: 125 VFEKQSDFAHLDDYDSHMHSLVLD-------LGSLVLIHYLS------------------ 159
           +   ++         + + SL++        + S  + H L+                  
Sbjct: 535 IHSGKAFHILGHKNKTKVRSLIVPRFEEDYWIRSASVFHNLTLLRVLDLSWVKFEGGKLP 594

Query: 160 -GIENLFLLRYLKLNIPSLKSLPSPL------------------------LSNLLNLYTL 194
             I  L  LRYL L    +  LPS +                        L  ++ L  L
Sbjct: 595 CSIGGLIHLRYLSLYEAKVSHLPSTMRNLKLLLYLNLRVDTEEPIHVPNVLKEMIQLRYL 654

Query: 195 DMPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDIL 254
            +P    D T  E   + NL +L +G  T  +      R  +      +L   C  E + 
Sbjct: 655 SLPLKMDDKTKLELGDLVNLEYL-YGFSTQHSSVTDLLRMTKLRYLAVSLSERCNFETLS 713

Query: 255 GRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRL 314
             L  LRNL     L   ++ +   +        + L        +SKI   ++QFPP L
Sbjct: 714 SSLRELRNLETLNFLFSLETYMVDYMGEFVLDHFIHLKQLGLAVRMSKIP-DQHQFPPHL 772

Query: 315 THLSFSNTELMEDP---------------KSRASSSRKLTCGSDGFPNLKVLHLKSMLWL 359
            HL      + EDP                 +A    ++ C   GFP L V+ +     L
Sbjct: 773 VHLFLIYCGMEEDPMPILEKLLHLKSVRLARKAFLGSRMVCSKGGFPQLCVIEISKESEL 832

Query: 360 EEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQLELRQKL 412
           EEW +  G+MP L  L I+ C  LK++P+    I SL +      + E ++KL
Sbjct: 833 EEWIVEEGSMPCLRTLTIDDCKKLKELPDGLKYITSLKELKIEGMKREWKEKL 885

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. The interaction with TIP (TCV-interacting protein) may be essential for the recognition of the avirulence proteins, and the triggering of the defense response.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DI18|DRL45_ARATH Probable disease resistance protein RDL6 OS=Arabidopsis thaliana GN=RDL6 PE=2 SV=1

 Score = 88.6 bits (218), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 133/486 (27%), Positives = 182/486 (37%), Gaps = 115/486 (23%)

Query: 12  YCRLPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEG-FIPDNSEATAEKD-----LELL 65
           +  LP  LK CFLYL+ FP   EI+ + L   W AEG F P + +    +D     +E L
Sbjct: 417 FEELPSYLKHCFLYLAHFPDDYEINVKNLSYYWAAEGIFQPRHYDGEIIRDVGDVYIEEL 476

Query: 66  INRGFVDTRKRGAGGTINTCSVHGRCRPVLLSVAFEAKF--------------------- 104
           + R  V + +        TC +H   R V L  A E  F                     
Sbjct: 477 VRRNMVISERDVKTSRFETCHLHDMMREVCLLKAKEENFLQITSSRTSTGNSLSIVTSRR 536

Query: 105 ----------VFFPFGDPKGKSRKNVKRINVFEKQ-------SDFAHLDDYDS-HMHSLV 146
                     V     DPK +S   V    +F          S F  L+      +H   
Sbjct: 537 LVYQYPITLDVEKDINDPKLRSLVVVANTYMFWGGWSWMLLGSSFIRLELLRVLDIHRAK 596

Query: 147 LDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNL-----LNLYTLDMPFSYI 201
           L  G L      S I  L  LRYL L    +  +P  L  NL     LNL  L    + +
Sbjct: 597 LKGGKLA-----SSIGQLIHLRYLNLKHAEVTHIPYSL-GNLKLLIYLNLVILVSGSTLV 650

Query: 202 DHTADEFWKMNNLRHLNFGSITLPAH-PRKYCRSLENLNFISALH----PCCCTEDILGR 256
            +   E   M  LR+L      LP    RK    L NL  +  L       C  ED+ G 
Sbjct: 651 PNVLKE---MQQLRYL-----ALPKDMGRKTKLELSNLVKLETLKNFSTKNCSLEDLRG- 701

Query: 257 LPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLV---SESK----------------- 296
           +  LR L I          L+ S+  L  LESL +    SE +                 
Sbjct: 702 MVRLRTLTIELRKETSLETLAASIGGLKYLESLTITDLGSEMRTKEAGIVFDFVYLKTLT 761

Query: 297 ----MPTLSKIVLVEYQFPPRLTHLSFSNTELMEDP---------------KSRASSSRK 337
               MP LSK    E  FP  LT L   +  L EDP               + ++ S ++
Sbjct: 762 LKLYMPRLSK----EQHFPSHLTTLYLQHCRLEEDPMPILEKLHQLKELELRRKSFSGKE 817

Query: 338 LTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQ--PWCIKS 395
           + C S GFP L+ L +K +   E+W +   +MP L  L I  C  LK++P++  P  + S
Sbjct: 818 MVCSSGGFPQLQKLSIKGLEEWEDWKVEESSMPVLHTLDIRDCRKLKQLPDEHLPSHLTS 877

Query: 396 LNKFNC 401
           ++ F C
Sbjct: 878 ISLFFC 883

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DI17|DRL11_ARATH Probable disease resistance protein RF9 OS=Arabidopsis thaliana GN=RF9 PE=2 SV=1

 Score = 88.6 bits (218), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 133/486 (27%), Positives = 182/486 (37%), Gaps = 115/486 (23%)

Query: 12  YCRLPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEG-FIPDNSEATAEKD-----LELL 65
           +  LP  LK CFLYL+ FP   EI+ + L   W AEG F P + +    +D     +E L
Sbjct: 417 FEELPSYLKHCFLYLAHFPDDYEINVKNLSYYWAAEGIFQPRHYDGEIIRDVGDVYIEEL 476

Query: 66  INRGFVDTRKRGAGGTINTCSVHGRCRPVLLSVAFEAKF--------------------- 104
           + R  V + +        TC +H   R V L  A E  F                     
Sbjct: 477 VRRNMVISERDVKTSRFETCHLHDMMREVCLLKAKEENFLQITSSRTSTGNSLSIVTSRR 536

Query: 105 ----------VFFPFGDPKGKSRKNVKRINVFEKQ-------SDFAHLDDYDS-HMHSLV 146
                     V     DPK +S   V    +F          S F  L+      +H   
Sbjct: 537 LVYQYPITLDVEKDINDPKLRSLVVVANTYMFWGGWSWMLLGSSFIRLELLRVLDIHRAK 596

Query: 147 LDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNL-----LNLYTLDMPFSYI 201
           L  G L      S I  L  LRYL L    +  +P  L  NL     LNL  L    + +
Sbjct: 597 LKGGKLA-----SSIGQLIHLRYLNLKHAEVTHIPYSL-GNLKLLIYLNLVILVSGSTLV 650

Query: 202 DHTADEFWKMNNLRHLNFGSITLPAH-PRKYCRSLENLNFISALH----PCCCTEDILGR 256
            +   E   M  LR+L      LP    RK    L NL  +  L       C  ED+ G 
Sbjct: 651 PNVLKE---MQQLRYL-----ALPKDMGRKTKLELSNLVKLETLKNFSTKNCSLEDLRG- 701

Query: 257 LPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLV---SESK----------------- 296
           +  LR L I          L+ S+  L  LESL +    SE +                 
Sbjct: 702 MVRLRTLTIELRKETSLETLAASIGGLKYLESLTITDLGSEMRTKEAGIVFDFVYLKTLT 761

Query: 297 ----MPTLSKIVLVEYQFPPRLTHLSFSNTELMEDP---------------KSRASSSRK 337
               MP LSK    E  FP  LT L   +  L EDP               + ++ S ++
Sbjct: 762 LKLYMPRLSK----EQHFPSHLTTLYLQHCRLEEDPMPILEKLHQLKELELRRKSFSGKE 817

Query: 338 LTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQ--PWCIKS 395
           + C S GFP L+ L +K +   E+W +   +MP L  L I  C  LK++P++  P  + S
Sbjct: 818 MVCSSGGFPQLQKLSIKGLEEWEDWKVEESSMPVLHTLDIRDCRKLKQLPDEHLPSHLTS 877

Query: 396 LNKFNC 401
           ++ F C
Sbjct: 878 ISLFFC 883

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M667|RPP13_ARATH Disease resistance protein RPP13 OS=Arabidopsis thaliana GN=RPP13 PE=2 SV=2

 Score = 87.4 bits (215), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 119/425 (28%), Positives = 174/425 (40%), Gaps = 84/425 (19%)

Query: 20  KLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKD----LELLINRGFVDTRK 75
           KLCFLYLS+FP   EI   +L  L +AEGFI  + E   E      +E LI+R  ++  +
Sbjct: 418 KLCFLYLSIFPEDYEIDLEKLIHLLVAEGFIQGDEEMMMEDVARYYIEELIDRSLLEAVR 477

Query: 76  RGAGGTINTCSVHGRCRPVLLSVAFEAKF--------------------VFFPFGDPKGK 115
           R   G + +C +H   R V +  + E  F                    V   F     +
Sbjct: 478 R-ERGKVMSCRIHDLLRDVAIKKSKELNFVNVYNDHVAQHSSTTCRREVVHHQFKRYSSE 536

Query: 116 SRKNVKRINVFEKQSDFAHLDDYDSHMHSL--VLDLGSLVLIHYLSGIENLFLLRYLKLN 173
            RKN KR+  F    +F HL   D     L  VLD GSL L   ++G  +L  LRYL ++
Sbjct: 537 KRKN-KRMRSFLYFGEFDHLVGLDFETLKLLRVLDFGSLWLPFKING--DLIHLRYLGID 593

Query: 174 IPSLKSLP-SPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLN---FGSITLPAHPR 229
             S+     + ++S L  L TL +  +Y      +  K+ +LRH+    FG + +     
Sbjct: 594 GNSINDFDIAAIISKLRFLQTLFVSDNYFIEETIDLRKLTSLRHVIGNFFGGLLIGDVAN 653

Query: 230 KYCRSLENLNFIS--ALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLE 287
              ++L +++F S   L P          L NLR+L I       +  +  S  +LT LE
Sbjct: 654 --LQTLTSISFDSWNKLKPEL--------LINLRDLGISEMSRSKERRVHVSWASLTKLE 703

Query: 288 SLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELME--DPKSRASSSRKL---TCGS 342
           SL+++   K+ T            P   HLS  + E +   D  SR+  S  L   T   
Sbjct: 704 SLRVL---KLAT------------PTEVHLSLESEEAVRSMDVISRSLESVTLVGITFEE 748

Query: 343 DGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCW 402
           D  P L+                   MP+LE LI+  C Y  KM         L K +  
Sbjct: 749 DPMPFLQ------------------KMPRLEDLILLSCNYSGKMSVSEQGFGRLRKLDLL 790

Query: 403 WPQLE 407
              L+
Sbjct: 791 MRSLD 795

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. In contrast to other resistance proteins, it works independently of ESD1 and NSD1 proteins and does not require the accumulation of salicylic acid, suggesting the existence of an independent signaling pathway. The specificity to avirulence proteins differs in the different cultivars.

Arabidopsis thaliana (taxid: 3702)

>sp|P0C8S1|RP8L2_ARATH Probable disease resistance RPP8-like protein 2 OS=Arabidopsis thaliana GN=RPP8L2 PE=1 SV=1

 Score = 86.7 bits (213), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 115/452 (25%), Positives = 162/452 (35%), Gaps = 78/452 (17%)

Query: 12  YCRLPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIP---DNS--EATAEKDLELLI 66
           Y  LP  LK CF YL+ FP   +I  + L+  W+AEG I    D S  + T E  LE L+
Sbjct: 411 YEDLPMQLKHCFFYLAHFPEDYKIDVKILFNYWVAEGIITPFHDGSTIQDTGESYLEELV 470

Query: 67  NRGFVDTRKRGAGGTINTCSVHGRCRPVLLSVAFEAKFVFFPFGDPKGKSRKNVK----- 121
            R  V   +      I  C +H   R V LS A E  F+          +  N +     
Sbjct: 471 RRNMVVVEESYLTSRIEYCQMHDMMREVCLSKAKEENFIRVVKVPTTTSTTINAQSPCRS 530

Query: 122 RINVFEKQSDFAHLDDYDSHMHSLVLDLG--------------------SLVLIHYLSG- 160
           R  V    +    L   D+     VL  G                     L  + +  G 
Sbjct: 531 RRLVLHSGNALHMLGHKDNKKARSVLIFGVEEKFWKPRGFQCLPLLRVLDLSYVQFEGGK 590

Query: 161 ----IENLFLLRYLKLNIPSLKSLPSP------------------------LLSNLLNLY 192
               I +L  LR+L L    +  LPS                         +L  +  L 
Sbjct: 591 LPSSIGDLIHLRFLSLYEAGVSHLPSSLGNLKLLLCLNLGVADRLLVHVPNVLKEMQELR 650

Query: 193 TLDMPFSYIDHTADEFWKMNNLRHL-NFGSITLPAHPRKYCRSLENLNFISALHPCCCTE 251
            L +P S    T  E   + NL  L NF +             L  LN I +    C  E
Sbjct: 651 YLRLPRSMPAKTKLELGDLVNLESLTNFSTKHGSVTDLLRMTKLSVLNVIFSGE--CTFE 708

Query: 252 DILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFP 311
            +L  L  LRNL       + +  ++     L  L+ + L   +    L +    +Y+FP
Sbjct: 709 TLLLSLRELRNLETLSFHDFQKVSVANHGGELLVLDFIHLKDLTLSMHLPRFP-DQYRFP 767

Query: 312 PRLTHLSFSNTELMEDP---------------KSRASSSRKLTCGSDGFPNLKVLHLKSM 356
           P L H+      + EDP                S A   R++ C   GFP L  L +   
Sbjct: 768 PHLAHIWLIGCRMEEDPMPILEKLLHLKSVYLSSGAFLGRRMVCSKGGFPQLLALKMSYK 827

Query: 357 LWLEEWTMGIGAMPKLECLIINPCAYLKKMPE 388
             L EW +  G+MP L  L I+ C  LK++P+
Sbjct: 828 KELVEWRVEEGSMPCLRTLTIDNCKKLKQLPD 859

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DI16|DRL44_ARATH Probable disease resistance protein RDL5 OS=Arabidopsis thaliana GN=RDL5 PE=1 SV=1

 Score = 85.1 bits (209), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 115/464 (24%), Positives = 174/464 (37%), Gaps = 79/464 (17%)

Query: 12  YCRLPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEG-FIPDNSEATAEKD-----LELL 65
           +  LP  LK CFLYL+ FP   EI    L   W AEG F P + +    +D     +E L
Sbjct: 417 FEELPSYLKHCFLYLAHFPEDYEIKVENLSYYWAAEGIFQPRHYDGETIRDVGDVYIEEL 476

Query: 66  INRGFVDTRKRGAGGTINTCSVHGRCRPVLLSVAFEAKFVFFPFGDPKGKSRKNVKRINV 125
           + R  V + +        TC +H   R V L  A E  F+      P   + ++      
Sbjct: 477 VRRNMVISERDVKTSRFETCHLHDMMREVCLLKAKEENFLQITSSRPSTANLQSTVTSRR 536

Query: 126 FEKQ---SDFAHLDDYDSHMHSL-VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLP 181
           F  Q   +     D  +  + +L V+ LGS  L    S    L LLR L L    +K   
Sbjct: 537 FVYQYPTTLHVEKDINNPKLRALVVVTLGSWNLAG--SSFTRLELLRVLDLIEVKIKGGK 594

Query: 182 -SPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNF 240
            +  +  L++L  L + ++ + H       +  L +LN  S             ++ L +
Sbjct: 595 LASCIGKLIHLRYLSLEYAEVTHIPYSLGNLKLLIYLNLASFGRSTFVPNVLMGMQELRY 654

Query: 241 ISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESL--KLVSESKMP 298
           ++   P          L NL  L    + S   S L + LC +  L +L  KL+ E+ + 
Sbjct: 655 LAL--PSDMGRKTKLELSNLVKLETLENFSTENSSL-EDLCGMVRLSTLNIKLIEETSLE 711

Query: 299 TLSK--------------------------IVL------------------VEYQFPPRL 314
           TL+                           IV                    E  FP  L
Sbjct: 712 TLAASIGGLKYLEKLEIYDHGSEMRTKEAGIVFDFVHLKRLWLKLYMPRLSTEQHFPSHL 771

Query: 315 THLSFSNTELMEDPKS---------------RASSSRKLTCGSDGFPNLKVLHLKSMLWL 359
           T L   +  L EDP                  + S +K+ C S GFP L+ L L  +   
Sbjct: 772 TTLYLESCRLEEDPMPILEKLLQLKELELGFESFSGKKMVCSSGGFPQLQRLSLLKLEEW 831

Query: 360 EEWTMGIGAMPKLECLIINPCAYLKKMPEQ--PWCIKSLNKFNC 401
           E+W +   +MP L  L I  C  LK++P++  P  + S++ F C
Sbjct: 832 EDWKVEESSMPLLRTLDIQVCRKLKQLPDEHLPSHLTSISLFFC 875

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	430
359496848	856	PREDICTED: disease resistance RPP8-like	0.872	0.438	0.295	3e-35
147766035	902	hypothetical protein VITISV_038742 [Viti	0.876	0.417	0.289	4e-34
359491404	922	PREDICTED: probable disease resistance R	0.948	0.442	0.298	3e-33
339431373	968	putative CC-NBS-LRR protein [Malus x dom	0.897	0.398	0.298	2e-31
356538242	912	PREDICTED: disease resistance RPP8-like	0.927	0.437	0.281	8e-30
359489156	899	PREDICTED: probable disease resistance p	0.979	0.468	0.276	1e-29
356496703	910	PREDICTED: disease resistance RPP8-like	0.941	0.445	0.275	2e-29
359489148	897	PREDICTED: probable disease resistance R	0.951	0.455	0.281	1e-28
297744820	807	unnamed protein product [Vitis vinifera]	0.979	0.521	0.273	2e-28
147839260	816	hypothetical protein VITISV_033801 [Viti	0.925	0.487	0.281	3e-28

>gi|359496848|ref|XP_002269653.2| PREDICTED: disease resistance RPP8-like protein 3-like [Vitis vinifera]

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 131/444 (29%), Positives = 193/444 (43%), Gaps = 69/444 (15%)

Query: 12  YCRLPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNSEAT----AEKDLELLIN 67
           Y  LP+ LK CFLY  +FP  LEI   +L  LWIAEGF+    E +    AE  LE L++
Sbjct: 374 YNDLPYYLKPCFLYFGLFPEDLEIPVGKLVLLWIAEGFVQQRGEESMEDVAEDFLEELVD 433

Query: 68  RGFVDTRKRGAGGTINTCSVHGRCRPVLLSVAFEAKFV-FFPFGDPKGKSRKNVKRINVF 126
           R  +   ++   G I  C +H   R + +S A E KF+      +         +RI+V 
Sbjct: 434 RSMIQVAEKRYNGKIKACRIHDLLRDLAMSEAKECKFLEILDSTNIDTSVTTRARRISVH 493

Query: 127 EKQSDFAHLDDYDSHMHSL--------------------------VLDLGSLVLIHYLSG 160
               ++  L   + H  S+                          VLDL  +        
Sbjct: 494 SSLEEYMKLRHPNPHFRSMLHFSRCEESLRRDQWKSLFESLKLLRVLDLERVQTHALPKE 553

Query: 161 IENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFG 220
           I  L  LRYL L    L+ LPS +  N  NL TLD+  + +     + W M  LRHL   
Sbjct: 554 IRELVHLRYLGLRRTGLQRLPSSI-QNFCNLQTLDIRATKVSRLPIQLWNMPGLRHLYLE 612

Query: 221 SITLPAHPRKYCR--SLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQ 278
             ++  HP  +     L+ L+ +S ++      D+LG+L NLR L I G  +     LS+
Sbjct: 613 KTSIAGHPPVHVSVMHLQTLSTVS-IYGNQWIPDLLGKLTNLRKLGIHGYFASQTEALSR 671

Query: 279 SLCTLTCLESLKLVSES-----------KMPTLSKIVL---VE-----YQFPPRLTHLSF 319
            L  L+ L++L+L                 P + K+ L   +E      +  P LT +  
Sbjct: 672 CLVKLSNLQNLQLRGTELILEPTIKLLLNQPNIHKLHLSGPIEKLPDPQEIQPNLTKIIL 731

Query: 320 SNTELMED--------PKSRASS-------SRKLTCGSDGFPNLKVLHLKSMLWLEEWTM 364
            N+ L++D        P  +           +++TC + GFP L  L L  ++ LEEW +
Sbjct: 732 ENSLLVQDIFVILGKLPNLQMLKLLINSFFGKEITCSASGFPKLHGLELSELVNLEEWRV 791

Query: 365 GIGAMPKLECLIINPCAYLKKMPE 388
             GAMP L  LII+ C  LKK+PE
Sbjct: 792 DDGAMPSLRHLIIDHCDQLKKIPE 815

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766035|emb|CAN70214.1| hypothetical protein VITISV_038742 [Vitis vinifera]

 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 129/446 (28%), Positives = 192/446 (43%), Gaps = 69/446 (15%)

Query: 10  FKYCRLPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNSEAT----AEKDLELL 65
             Y  LP+ LK CFLY  +FP  LEI   +L  LWIAEGF+    E +    AE  LE L
Sbjct: 418 LSYNDLPYYLKPCFLYFGLFPEDLEIPVGKLVLLWIAEGFVQQRGEESMEDVAEDFLEEL 477

Query: 66  INRGFVDTRKRGAGGTINTCSVHGRCRPVLLSVAFEAKFV-FFPFGDPKGKSRKNVKRIN 124
           ++R  +   ++   G I  C +H   R + +S A E KF+      +         +RI+
Sbjct: 478 VDRSMIQVAEKRYNGKIKMCRIHDLLRDLAMSEAKECKFLEILDSTNIDTSVTTRARRIS 537

Query: 125 VFEKQSDFAHLDDYDSHMHSL--------------------------VLDLGSLVLIHYL 158
           V     ++  L   + H  S+                          VLDL  +      
Sbjct: 538 VHSSLEEYMKLRHPNPHFRSMLHFSRCEESLRREQWKSLFESLKLLRVLDLERVQTHALP 597

Query: 159 SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLN 218
             I  L  LRYL L    L+ LPS +  N  NL TLD+  + +     + W M  LRHL 
Sbjct: 598 KEIRELVHLRYLGLRRTGLQRLPSSV-QNFCNLQTLDIRATKVSRLPIQLWNMPGLRHLY 656

Query: 219 FGSITLPAHPRKYCR--SLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLL 276
               ++  HP  +     L+ L+ +S ++      D+LG+L NLR L I G  +     L
Sbjct: 657 LEKTSIAGHPPVHVSVMHLQTLSTVS-IYGNQWIPDLLGKLTNLRKLGIHGYFASQTEAL 715

Query: 277 SQSLCTLTCLESLKLVSES-----------KMPTLSKIVL---VE-----YQFPPRLTHL 317
           S+ L  L+ L++L+L                 P + K+ L   +E      +  P LT +
Sbjct: 716 SRCLVKLSNLQNLQLRGTELILEPTIKLLLNQPNIHKLHLSGPIEKLPDPQEIQPNLTKI 775

Query: 318 SFSNTELMED--------PKSRASS-------SRKLTCGSDGFPNLKVLHLKSMLWLEEW 362
               + L++D        P  +           +++TC + GFP L  L L  ++ LEEW
Sbjct: 776 ILEKSLLVQDIFVILGKLPNLQMLKLLINSFFGKEITCSASGFPKLHGLELSELVNLEEW 835

Query: 363 TMGIGAMPKLECLIINPCAYLKKMPE 388
            +  GAMP L  L+I+ C  LKK+PE
Sbjct: 836 RVDDGAMPSLRHLVIDHCDQLKKIPE 861

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491404|ref|XP_002274414.2| PREDICTED: probable disease resistance RPP8-like protein 2-like [Vitis vinifera]

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 143/479 (29%), Positives = 200/479 (41%), Gaps = 71/479 (14%)

Query: 12  YCRLPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNS----EATAEKDLELLIN 67
           Y  LP+ LK CFLY  +FP   EIS R+L  LW+AEGF+        E  AE  LE L+ 
Sbjct: 428 YSDLPYYLKSCFLYFGLFPEDYEISARRLILLWVAEGFVQPRGQEPLEDVAEDYLEELVG 487

Query: 68  RGFVDTRKRGAGGTINTCSVHGRCRPVLLSVAFEAKFVFFPFGDPKGKSRKNVKRINVF- 126
           R  +    R + G I TC VH     + +S   E +F+    G+    S   V+R+ +  
Sbjct: 488 RSMIQVATRKSNGRIKTCCVHDLLHELSVSKGKEDQFLDIIHGEFTVSSLTRVRRLAIHL 547

Query: 127 ---------EKQSDFAHLDDYDSHMHSL-------VLDLGSLVLIHYLSGIENLFLLRYL 170
                     K       D  +     L       +LDL  + +    S I NL  LRYL
Sbjct: 548 GVPPTTKNTSKVRSLLCFDICEPSFQELRKFKLLRILDLEGVYISRLHSSIGNLIHLRYL 607

Query: 171 KLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPRK 230
            L    LK LP P +  LLNL TLD+  + ++      WKM  LRHL F  +   A    
Sbjct: 608 GLRGTWLKKLP-PSIQFLLNLQTLDLRSTLLNPIPIVIWKMQKLRHLYFNELEEMAVNPP 666

Query: 231 YCRSLENLNFISALHPCCC-----TEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTC 285
              SL NL     LH  C       E+ L +L NLR L + GDL  ++  + + + +   
Sbjct: 667 TDASLANLQ---TLHGICINQTSYVENGLSKLTNLRELGLHGDLLLHEEAIGKWIFSSER 723

Query: 286 LESLKLVSESKMPTLSKIVL-------------------------VEYQFPPRLTHLSFS 320
           LE LKL +   M   +K  +                          EY FP  LT LS  
Sbjct: 724 LECLKLHTRDVMGDFAKNAIPKLNFSSHPHLIKLHLKGFMAKLFDAEY-FPQNLTELSLK 782

Query: 321 NTELMEDP---------------KSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMG 365
            + LMEDP               K  A   +++ C   GFP L  L L  +  +E W + 
Sbjct: 783 GSFLMEDPMVKLEMLQSLRVLKLKHSAYLGKEMICSCGGFPQLHFLKLSFLNTVERWRIE 842

Query: 366 IGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQLELRQKLREFEDKEQYGIQ 424
            GAM +L  L I  C  LK +P     + +++K    +   E   K++E + +  Y I+
Sbjct: 843 DGAMGRLRQLEIIECKRLKIVPRGLQPVTTIHKLKLGYMPREFEMKVQERQGENWYKIE 901

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|339431373|gb|AEJ72566.1| putative CC-NBS-LRR protein [Malus x domestica]

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 148/495 (29%), Positives = 208/495 (42%), Gaps = 109/495 (22%)

Query: 12  YCRLPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNSEA--------TAEKDLE 63
           Y  LPF LK CFLYLS FP   EI  R+L QLWIAEG +  + EA         AE+ L 
Sbjct: 451 YHDLPFQLKPCFLYLSHFPEDFEIPRRKLVQLWIAEGIVSPHHEAEGDETIEDVAERYLG 510

Query: 64  LLINRGFVDTRKRGAGGTINTCSVHGRCRPVLLSVAFEAKF---VFFPFGD--------- 111
            LINR  V     G+ G I TC +H   R + LS A +  F   + +P  +         
Sbjct: 511 YLINRCMVQVGTLGSTGNIKTCRLHDLMRDLCLSKAKQENFLQIIHYPDENMVVNSSSSR 570

Query: 112 --PKGKSRKNVKRINVF-EKQSDFAHLDDYDSHMHSLVLDLGSLVLIHY----------- 157
              +  S    +R+ VF   Q D      Y    H   L L SL+  H            
Sbjct: 571 MLSETTSTGKTRRLAVFLPSQVDNLIPSKYKEDSH---LSLRSLIFFHASKCRLVNWLLT 627

Query: 158 -------------LSGIE-----------NLFLLRYLKLNIPSLKSLPSPLLSNLLNLYT 193
                        L G++           +L  L++L L    +++LPS +  NL++L T
Sbjct: 628 RTIFEFKMLKVLDLEGVKGPYEKLPKDIGDLVQLQFLSLKKTHIQALPSSI-GNLIHLKT 686

Query: 194 LDM------PFSYIDHTADEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPC 247
           L++       +       +  WKM  LRHL        A  +    +L NL  +      
Sbjct: 687 LNLQTISKLSWDLTVQIPNVIWKMERLRHLYLPKWCGNAVDKLQLGNLINLQTLVNFPAN 746

Query: 248 CCTEDILGRLPNLRNLRIWGDLSYYQSLL---SQSLCTLTCLESLKLVSES--------- 295
            C  + L +L NLR L +  D  +++SL+   S    TL+CLESL L SE+         
Sbjct: 747 KCDVEDLRKLTNLRKL-VLNDPKHFKSLVIIFSPQSRTLSCLESLSLTSETLSFPDDVVD 805

Query: 296 ------------KMPTLSKI-VLVEY-QFPPRLTHLSFSNTELMEDPKS----------- 330
                       K+    +I  L EY QFPP L  L+   + L EDP             
Sbjct: 806 VRQLMLSCRRLQKLHVEGRIEKLPEYHQFPPNLAKLTLWGSNLEEDPMPTLERLPNLRIL 865

Query: 331 ---RASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMP 387
              +  + +K+ C + GFP LK L L+    LE+WTM  GAMP L  L I+ C  LK +P
Sbjct: 866 SGWQMFAGKKMVCSNQGFPKLKSLLLRGFSNLEDWTMEEGAMPSLCRLEISSCIKLKMIP 925

Query: 388 EQPWCIKSLNKFNCW 402
           +    +K+L +   +
Sbjct: 926 DSLRFVKTLQELEIY 940

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538242|ref|XP_003537613.1| PREDICTED: disease resistance RPP8-like protein 3-like [Glycine max]

 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 142/504 (28%), Positives = 200/504 (39%), Gaps = 105/504 (20%)

Query: 2   EKPLGLWYFKYCRLPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNSEATAE-- 59
           EK   +    Y  LP  LK CFLYL +FP  + I T++L +LW+AEGF+    E TAE  
Sbjct: 399 EKIARILALSYNDLPPHLKSCFLYLGLFPEGVNIQTKKLIRLWVAEGFLLQEGEETAEGV 458

Query: 60  --KDLELLINRGFVDTRKRGAGGTINTCSVHGRCRPVLLSVAFEAKFVFFPFGDPKGKSR 117
             K L  LI R  +      + G + T  +H   R + LS   E  F+    GD  G S 
Sbjct: 459 AQKYLNELIGRCMIQVGTVSSLGRVKTIRIHHLLRDLSLSKGKEGYFLKIYQGDVAGPST 518

Query: 118 KNVKRINVFEKQSDFAHLDDYDS------HMHSL-------------------------- 145
           K  +          F H D YDS      H  SL                          
Sbjct: 519 KARRH------SMHFCH-DRYDSLKHNSDHSRSLLFFNREYNADIVRKLWLPLNLQQEKK 571

Query: 146 ------------VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYT 193
                       VL+L  + ++   S I NL  LRYL L   +L+    P + NL NL T
Sbjct: 572 LNFIFRKFKLLRVLELDGVRVVSLPSTIGNLIQLRYLGLRKTNLEEELPPSIGNLQNLQT 631

Query: 194 LDMPFS-YIDHTADEFWKMNNLRHLN-FGSITLPAHPRKYCRSLENLNFISALHPCCCTE 251
           LD+ +  ++    +  WKM NLRHL  +     P        +L NL  +  +       
Sbjct: 632 LDLRYCCFLKKIPNIIWKMVNLRHLLLYTPFDSPDSSHLRLDTLTNLQTLPHIEAGNWIG 691

Query: 252 DILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLT--------------------------- 284
           D  G L N+ NLR  G       +++  L T+                            
Sbjct: 692 D--GGLANMINLRQLGICELSGQMVNSVLSTVQGLHNLHSLSLSLQSEEDEFPIFMQLSQ 749

Query: 285 CLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSR------------- 331
           C    KL    K+  L       ++FPP L  L+  N+ L ++  ++             
Sbjct: 750 CTHLQKLSLNGKIKKLPD----PHEFPPNLLKLTLHNSHLRKESIAKLERLPNLKMLILG 805

Query: 332 --ASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQ 389
             A +  +L   ++GFP L +L L  +  LEEWT+   AMP+LE ++I+ C  LKK+PE 
Sbjct: 806 KGAYNWPELNFNAEGFPQLHILRLVLLKELEEWTVEESAMPRLENMVIDRCEKLKKIPEG 865

Query: 390 PWCIKSLNKFNCWWPQLELRQKLR 413
              I SL K       +E   KLR
Sbjct: 866 LKAITSLKKLKIIGMPVEFEHKLR 889

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489156|ref|XP_003633889.1| PREDICTED: probable disease resistance protein RDL6/RF9-like [Vitis vinifera]

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 139/502 (27%), Positives = 221/502 (44%), Gaps = 81/502 (16%)

Query: 5   LGLWYFKYCRLPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFI----PDNSEATAEK 60
           LG+    Y  +P+ LK CFLY  +FP   EI T +L +LW+AEGFI     + +E  AE 
Sbjct: 396 LGVLALSYNDMPYYLKSCFLYCGLFPEDSEIRTDKLIRLWVAEGFIQRRGEEIAEDVAED 455

Query: 61  DLELLINRGFVDTRKRGAGGTINTCSVHGRCRPVLLSVAFEAKFVFFPFGDPKGKSRKNV 120
            L+ L++R  +    R   G + +C +H   R + +S A + KF F  +      S  +V
Sbjct: 456 HLQELVHRSMIQVAARSFDGRVMSCRMHDLLRDLAISEAKDTKF-FEGYESIDSTSPVSV 514

Query: 121 KRINVFE-KQSDFAHLDDYDS-----------------HMHS-----LVLDLGSLVLIHY 157
           +R+ + + K+++  HL    S                  +H       VLDL  + +   
Sbjct: 515 RRLTIHQGKKTNSKHLHTSRSLRSFICFSVCFQENILRSLHRRVKLLTVLDLERMPINTI 574

Query: 158 LSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHL 217
             GI  L  L+YL L    +K LPS +   L NL TLD   ++I+      WK+++LRHL
Sbjct: 575 PEGIGELIHLKYLCLRRTRIKRLPSSI-GRLTNLQTLDFQSTFIEIIPSTIWKLHHLRHL 633

Query: 218 NFGSITLPAHPRKYCR----SLENLNFISALH----PCCCTEDILGRLPNLRNLRI-WGD 268
               +         CR    S+++L  + +L       CC E  LG+L  LR L I W  
Sbjct: 634 YGRGVVSSQSVIDKCRNGPLSVDHLTNLQSLGLRAGSWCCGEG-LGKLTELRELIIEWTK 692

Query: 269 LSYYQSL-LSQSLCTLTCLESLKLVS-ESKMPTLSKIV---------------------- 304
           ++  ++   S+S+  LT L+SL+L +  ++M TL  ++                      
Sbjct: 693 MAQTKNHGFSESVKKLTALQSLRLYTLGAEMFTLPHLMPFSDHTYLYHLSLRGRLERFPD 752

Query: 305 LVEYQFPPRLTHLSFSNTELMEDPKSRA---------------SSSRKLTCGSDGFPNLK 349
            +E+ +PP L  L      + +DP                   S  +K+ C S GF  L+
Sbjct: 753 EIEF-YPPNLISLELECWNIEQDPMVTLEKLPNLRFLILSLCYSMVKKMVCTSGGFQQLE 811

Query: 350 VLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCW--WPQLE 407
            L L  +  LEE  +  GAMP  + L+I  C  +K++       K+L     +   P+L 
Sbjct: 812 TLTLWGLKELEELIVEEGAMPDPKDLVIETCPKMKRLSHGLLQRKNLQHLKLYDLSPELM 871

Query: 408 LRQKLREFEDKEQYGIQLYPYG 429
               L E ED+E+  +    +G
Sbjct: 872 DELSLIEGEDREKICLATSIHG 893

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496703|ref|XP_003517205.1| PREDICTED: disease resistance RPP8-like protein 3-like [Glycine max]

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 137/497 (27%), Positives = 199/497 (40%), Gaps = 92/497 (18%)

Query: 2   EKPLGLWYFKYCRLPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNSEATAE-- 59
           EK   +    Y  LP  LK CFLYL +FP  + I T++L +LW+AEGF+    E TAE  
Sbjct: 398 EKIARILALSYNDLPPHLKSCFLYLGLFPEGVNIQTKKLIRLWVAEGFLLQEGEETAEGV 457

Query: 60  --KDLELLINRGFVDTRKRGAGGTINTCSVHGRCRPVLLSVAFEAKFVFFPFGDPKGKSR 117
             K L  LI R  +      + G + T  +H   R + LS   E  F+    GD  G+S 
Sbjct: 458 AQKYLNELIGRCMIQVGTVSSLGRVKTIRIHHLLRDLSLSKGKEEYFLKIFQGDVAGQST 517

Query: 118 KNVKRINVFEKQSDFAHLDDYDSHMHSL-------------------------------- 145
           K  +R ++      +  L     H  SL                                
Sbjct: 518 K-ARRHSMHSCHDRYDSLKHNAGHSRSLLFFNREYNDIVRKLWHPLNFQQEKKLNFIYRK 576

Query: 146 -----VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPF-S 199
                VL+L  + ++   S I +L  LRYL L   +L+    P + NL NL TLD+ +  
Sbjct: 577 FKLLRVLELDGVRVVSLPSLIGDLIQLRYLGLRKTNLEEELPPSIGNLQNLQTLDLRYCC 636

Query: 200 YIDHTADEFWKMNNLRH-LNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLP 258
           ++    +  WKM NLRH L +     P        +L NL  +  +       D  G L 
Sbjct: 637 FLMKIPNVIWKMVNLRHLLLYTPFDSPDSSHLRMDTLTNLQTLPHIEAGNWIVD--GGLA 694

Query: 259 NLRNLRIWGDLSYYQSLLSQSLCTL---------------------------TCLESLKL 291
           N+ NLR  G       +++  L T+                            C    KL
Sbjct: 695 NMINLRQLGICELSGQMVNSVLSTVQGLHNLHSLSLSLQSEEDEFPIFMQLSQCTHLQKL 754

Query: 292 VSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSR---------------ASSSR 336
               K+  L       ++FPP L  L+  N+ L ++  ++               A +  
Sbjct: 755 SLNGKIKKLPD----PHEFPPNLLKLTLHNSHLQKESIAKLERLPNLKVLILGKGAYNWP 810

Query: 337 KLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSL 396
           +L    +GFP L +L L  +  LEEWT+   AMP+LE ++I+ C  LKK+PE    I SL
Sbjct: 811 ELNFNGEGFPQLHILRLVLLKELEEWTVEENAMPRLENMVIDRCEKLKKIPEGLKAITSL 870

Query: 397 NKFNCWWPQLELRQKLR 413
            K       +E   KLR
Sbjct: 871 KKLKIIGMPVEFEHKLR 887

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489148|ref|XP_003633887.1| PREDICTED: probable disease resistance RPP8-like protein 4-like [Vitis vinifera]

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 137/486 (28%), Positives = 216/486 (44%), Gaps = 77/486 (15%)

Query: 5   LGLWYFKYCRLPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIP----DNSEATAEK 60
           LG+    Y  +P+ LK CFLY  +FP   EI T +L +LW+AEGFI     + +E  AE 
Sbjct: 395 LGVLALSYNDMPYYLKSCFLYCGLFPEDSEIWTDKLIRLWVAEGFIQRRGVEIAEDVAED 454

Query: 61  DLELLINRGFVDTRKRGAGGTINTCSVHGRCRPVLLSVAFEAKFVFFPFGDPKGKSRKNV 120
            L+ L++R  +    R   G + +C +H   R + +S A + KF F  +      S  +V
Sbjct: 455 HLQELVHRSMIQVAARSFDGRVMSCRMHDLLRDLAISEAKDTKF-FEGYESIDSTSPVSV 513

Query: 121 KRINVFE-KQSDFAHLDDYDS--------------HMHSL--------VLDLGSLVLIHY 157
           +R+ + + K+++  HL    S               + SL        VLDL  + +   
Sbjct: 514 RRLTIHQGKKTNSKHLHTSRSLRSFICFSVCFQKNSLRSLHRRVKLLTVLDLEGMTINTI 573

Query: 158 LSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHL 217
             GI  L  L+YL L    +K LPS  +  L NL TLD   + I+      WK+++LRHL
Sbjct: 574 PEGIGELIHLKYLCLRRTRIKRLPSS-IGRLTNLQTLDFRSTLIEIIPSTIWKLHHLRHL 632

Query: 218 N-FGSITLPAHPRKYCRSLENLNFISALHPCC------CTEDILGRLPNLRNLRI-WGDL 269
              G ++  +   K+     ++  ++ L   C      C  + LG+L  LR L I W ++
Sbjct: 633 YCRGVVSSQSVIDKFRNGPLSVGHLTNLQSLCLRAGSWCCGEGLGKLIELRELTIVWTEI 692

Query: 270 SYYQSL-LSQSLCTLTCLESLKLVSESK--------MPTLSKIVL--------------- 305
           +  ++   S+S+  LT L+SL+L +  +        MP      L               
Sbjct: 693 AQTKNQGFSESVKKLTALQSLRLYTLGEEMLTMPHLMPFSDHTYLYHLSLNGRLERFPDE 752

Query: 306 VEYQFPPRLT--HLSFSNTE------LMEDPKSR-------ASSSRKLTCGSDGFPNLKV 350
           +E+ +PP L    L + N E      L + P  R       +S  +K+ C S GF  L+ 
Sbjct: 753 IEF-YPPNLISLELRYRNAEQNPMVTLEKLPNLRFLRLSLCSSMLKKMVCTSGGFQQLET 811

Query: 351 LHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQLELRQ 410
           L L  +  LEE     GAMP L+ L+I+ C  +K++       K+L     +    EL  
Sbjct: 812 LRLWGLKELEELIAEEGAMPDLKDLVIDACPKMKRLSHGLLQRKNLQHLKLYDLSPELMD 871

Query: 411 KLREFE 416
           +L   E
Sbjct: 872 ELSRIE 877

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744820|emb|CBI38088.3| unnamed protein product [Vitis vinifera]

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 136/498 (27%), Positives = 217/498 (43%), Gaps = 77/498 (15%)

Query: 5   LGLWYFKYCRLPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFI----PDNSEATAEK 60
           LG+    Y  +P+ LK CFLY  +FP   EI T +L +LW+AEGFI     + +E  AE 
Sbjct: 282 LGVLALSYNDMPYYLKSCFLYCGLFPEDSEIWTEKLIRLWVAEGFIQRRGEEIAEDIAED 341

Query: 61  DLELLINRGFVDTRKRGAGGTINTCSVHGRCRPVLLSVAFEAKFVFFPFGDPKGKSRKNV 120
            L+ L++R  +    +   G + +C +H   R + +S A + KF F  +      S  +V
Sbjct: 342 HLQELVHRSMIQVADKSFDGRVMSCRMHDLLRDLAISEAKDTKF-FEGYESIDSTSPVSV 400

Query: 121 KRINVFE-KQSDFAHLDDYDS-----------------HMHS-----LVLDLGSLVLIHY 157
           +R+ + + K+++  HL    S                  +H       VLDL  + +   
Sbjct: 401 RRLTIHQGKKTNSKHLHTSRSLRSFICFSVCFQKNILRSLHRRVKLLTVLDLEGMTINTI 460

Query: 158 LSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHL 217
             GI  L  L+YL L    +K LPS  +  L NL TLD   + I+      WK+++LR+L
Sbjct: 461 PEGIGELIHLKYLCLKRTRIKRLPSS-IGRLTNLQTLDFRSTSIEIIPSTIWKLHHLRYL 519

Query: 218 NFGSITLPAHPRKYCR----SLENLNFISAL----HPCCCTEDILGRLPNLRNLRI-WGD 268
           +   +         CR    S+++L  + +L       CC E  LG+L  LR L + W +
Sbjct: 520 HGHGLVSSQSVIDKCRNGPLSVDHLTNLQSLGLRAGSWCCGEG-LGKLTELRELTVAWTE 578

Query: 269 LSYYQSL-LSQSLCTLTCLESLKL---VSESKMPTLSKIVLVEYQ--------------- 309
           ++  ++   S+S+  LT L+SL L   V    MP L       Y                
Sbjct: 579 IAQTKNQGFSESVKKLTALQSLCLCPTVERVNMPHLMPFSDHTYLYHLNLRGRLERFPDE 638

Query: 310 ---FPPRLTHLSFSNTELMEDPKSR---------------ASSSRKLTCGSDGFPNLKVL 351
              +PP L  L      + +DP                  +S  +K+ C S GF  L+ L
Sbjct: 639 IEFYPPNLISLELQCWNIEQDPMVTLGKLPNLRFLILFHCSSMVKKMVCTSGGFQQLETL 698

Query: 352 HLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQLELRQK 411
            L +   L+E  +  GAMP L+ L+I+ C  +K++       K+L     +    +LR +
Sbjct: 699 QLWNFKELKELIVEEGAMPDLKDLVIDTCPKMKRLSHGLLQRKNLQHLKLYDLSPKLRDE 758

Query: 412 L-REFEDKEQYGIQLYPY 428
           L R+      YG++   Y
Sbjct: 759 LSRKKFTAVDYGVEDVYY 776

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147839260|emb|CAN67961.1| hypothetical protein VITISV_033801 [Vitis vinifera]

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 126/448 (28%), Positives = 200/448 (44%), Gaps = 50/448 (11%)

Query: 5   LGLWYFKYCRLPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFI----PDNSEATAEK 60
           LG+    Y  +P+ LK CFLY  +FP   EI T +L + W+AEGFI     + +E  AE 
Sbjct: 363 LGVLALSYNDMPYYLKSCFLYCGLFPEDSEIRTDKLIRXWVAEGFIQRRGEEIAEDVAED 422

Query: 61  DLELLINRGFVDTRKRGAGGTINTCSVHGRCRPVLLSVAFEAKFVFFPFGDPKGKSRKNV 120
            L+ L++R  +    R   G + +C +H   R + +S A +  F F  +      S  +V
Sbjct: 423 HLQELVHRSXIQVAXRSFDGRVMSCRMHDLLRDLAISEAKDTNF-FEGYESIDSTSPVSV 481

Query: 121 KRINVFE-KQSDFAHLDDYDS-----------------HMHS-----LVLDLGSLVLIHY 157
           +R+ + + K+++  HL    S                  +H       VLDL  + +  +
Sbjct: 482 RRLTIHQGKKTNSKHLHTSRSLRSFICFSVCFQENILRSLHRRVKLLTVLDLERMPISTF 541

Query: 158 LSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHL 217
              I  L  L+YL L    +KSLPS  +  L NL TLD   + I+      WK+++LRHL
Sbjct: 542 PEAIGELIHLKYLCLRGTCIKSLPSS-IGRLTNLQTLDFRGTLIEIIPSTIWKLHHLRHL 600

Query: 218 NFGSITLPAHPRKYCRS-------LENLNFISALHPCCCTEDILGRLPNLRNLRI-WGDL 269
               +         CR+       L NL  +       C  + LG+L  LR L I W ++
Sbjct: 601 YGHGVVSSQSVIDKCRNGPLSVGHLTNLQSLGLRAGSWCCGEGLGKLIELRELTIAWTEI 660

Query: 270 SYYQSL-LSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDP 328
           +  ++   S+S+  LT L+SL L      P + +       F     H +F    L    
Sbjct: 661 AQTKNQGFSESVKKLTALQSLCL-----YPRIGE------NFNHAAPH-AFLRPHLPLPS 708

Query: 329 KSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPE 388
           K +  + +K+ C S GF  L+ L L ++  L+E     GAMP L+ L+I+ C  +K++  
Sbjct: 709 KFKRKARKKMVCTSGGFQQLETLKLWNLKELKELIAEEGAMPDLKDLVIDTCPKMKRLSH 768

Query: 389 QPWCIKSLNKFNCWWPQLELRQKLREFE 416
                K+L   + +    EL  +L   E
Sbjct: 769 GLLQRKNLQNLSLYDLSPELMDELSRIE 796

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	430
TAIR|locus:2169523	901	AT5G35450 [Arabidopsis thalian	0.576	0.275	0.261	9.3e-17
TAIR|locus:2176486	908	RPP8 "RECOGNITION OF PERONOSPO	0.534	0.253	0.264	5.8e-16
TAIR|locus:2152536	908	AT5G48620 [Arabidopsis thalian	0.258	0.122	0.335	2.3e-15
TAIR|locus:504956182	1049	AT1G58848 [Arabidopsis thalian	0.269	0.110	0.309	2.8e-13
TAIR|locus:2826978	1049	AT1G59218 [Arabidopsis thalian	0.269	0.110	0.309	2.8e-13
TAIR|locus:504956184	1017	AT1G58807 "AT1G58807" [Arabido	0.211	0.089	0.350	1.1e-11
TAIR|locus:2827038	1017	AT1G59124 "AT1G59124" [Arabido	0.211	0.089	0.350	1.1e-11
TAIR|locus:2197409	727	LOV1 "LOCUS ORCHESTRATING VICT	0.218	0.129	0.363	1.3e-10
TAIR|locus:504956186	1138	AT1G58602 [Arabidopsis thalian	0.3	0.113	0.298	2.1e-10
TAIR|locus:2037639	907	AT1G58390 "AT1G58390" [Arabido	0.190	0.090	0.340	4.8e-10

TAIR|locus:2169523 AT5G35450 [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 9.3e-17, Sum P(2) = 9.3e-17
 Identities = 69/264 (26%), Positives = 103/264 (39%)

Query:    12 YCRLPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKD-LELLINRGF 70
             Y  LP  LK CFLYL+ FP   +I TR LY  W AEG     +   + +D LE L+ R  
Sbjct:   410 YEDLPTDLKHCFLYLAHFPEDYKIKTRTLYSYWAAEGIYDGLTILDSGEDYLEELVRRNL 469

Query:    71 VDTRKRGAGGTINTCSVHGRCRPVLLSVAFEAKF---VFFPFGDPK--GKSRKNVKRINV 125
             V   K      +  C +H   R V +S A    F   +  P        +S    +R+ V
Sbjct:   470 VIAEKSNLSWRLKLCQMHDMMREVCISKAKVENFLQIIKVPTSTSTIIAQSPSRSRRLTV 529

Query:   126 FEKQSDFAHLDDYDSHMHSL-VLDLGSLVLIHYLSGIENLFLLRYXXXXXXXXXXXXXXX 184
                ++ F H+  +   + SL VL L   + I   S  ++L LLR                
Sbjct:   530 HSGKA-F-HILGHKKKVRSLLVLGLKEDLWIQSASRFQSLPLLRVLDLSSVKFEGGKLPS 587

Query:   185 XXXXXXXYT-LDMPFSYIDHTADEFWKMNNLRHLNFG-SITLPAHPRKYCRSLENLNFIS 242
                       L +  + + H       +  + +LN   +I +P H     + +  L ++S
Sbjct:   588 SIGGLIHLRFLSLHQAVVSHLPSTIRNLKLMLYLNLHVAIGVPVHVPNVLKEMLELRYLS 647

Query:   243 A---LHPCCCTEDILGRLPNLRNL 263
                 +H     E  LG L NL  L
Sbjct:   648 LPLDMHDKTKLE--LGDLVNLEYL 669

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2176486 RPP8 "RECOGNITION OF PERONOSPORA PARASITICA 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 5.8e-16, Sum P(2) = 5.8e-16
 Identities = 66/250 (26%), Positives = 99/250 (39%)

Query:   194 LDMPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFIS-ALHPCCCTED 252
             L +P    D T  E   + NL +L +G  T  +      R +  L +++ +L   C  E 
Sbjct:   654 LSLPLKMDDKTKLELGDLVNLEYL-YGFSTQHSSVTDLLR-MTKLRYLAVSLSERCNFET 711

Query:   253 ILGRLPNLRNLRIWGDXXXXXXXXXXXXXXXXXXXXXKLVSESKMPTLSKIVLVEYQFPP 312
             +   L  LRNL                           L        +SKI   ++QFPP
Sbjct:   712 LSSSLRELRNLETLNFLFSLETYMVDYMGEFVLDHFIHLKQLGLAVRMSKIP-DQHQFPP 770

Query:   313 RLTHLSFSNTELMEDP----------KS-----RASSSRKLTCGSDGFPNLKVLHLKSML 357
              L HL      + EDP          KS     +A    ++ C   GFP L V+ +    
Sbjct:   771 HLVHLFLIYCGMEEDPMPILEKLLHLKSVRLARKAFLGSRMVCSKGGFPQLCVIEISKES 830

Query:   358 WLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQLELRQKLREFED 417
              LEEW +  G+MP L  L I+ C  LK++P+    I SL +      + E ++KL     
Sbjct:   831 ELEEWIVEEGSMPCLRTLTIDDCKKLKELPDGLKYITSLKELKIEGMKREWKEKLVP-GG 889

Query:   418 KEQYGIQLYP 427
             ++ Y +Q  P
Sbjct:   890 EDYYKVQHIP 899

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051707 "response to other organism" evidence=IMP

TAIR|locus:2152536 AT5G48620 [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
 Identities = 45/134 (33%), Positives = 67/134 (50%)

Query:   300 LSKIVLVEYQFPPRLTHLSFSNTELMEDP----------KSRASS-----SRKLTCGSDG 344
             +SKI   ++QFPP L H+   +  + EDP          KS A S      R++ C   G
Sbjct:   759 MSKIP-DQHQFPPHLAHIHLVHCVMKEDPMPILEKLLHLKSVALSYGAFIGRRVVCSKGG 817

Query:   345 FPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWP 404
             FP L  L +     LEEW +  G+MP L  L I+ C  LK++P+    I SL        
Sbjct:   818 FPQLCALGISGESELEEWIVEEGSMPCLRTLTIHDCEKLKELPDGLKYITSLK------- 870

Query:   405 QLELRQKLREFEDK 418
             +L++R+  RE+++K
Sbjct:   871 ELKIREMKREWKEK 884

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:504956182 AT1G58848 [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
 Identities = 44/142 (30%), Positives = 66/142 (46%)

Query:   297 MPTLSKIVLVEYQFPPRLTHLSFSNTELMEDP---------------KSRASSSRKLTCG 341
             MP LSK    E  FP  LT L   +  L EDP               + ++ S +++ C 
Sbjct:   766 MPRLSK----EQHFPSHLTTLYLQHCRLEEDPMPILEKLHQLKELELRRKSFSGKEMVCS 821

Query:   342 SDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQ--PWCIKSLNKF 399
             S GFP L+ L +K +   E+W +   +MP L  L I  C  LK++P++  P  + S++ F
Sbjct:   822 SGGFPQLQKLSIKGLEEWEDWKVEESSMPVLHTLDIRDCRKLKQLPDEHLPSHLTSISLF 881

Query:   400 NCW-----WPQLELRQKLREFE 416
              C       P LE    L+E +
Sbjct:   882 FCCLEEDPMPTLERLVHLKELQ 903

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2826978 AT1G59218 [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
 Identities = 44/142 (30%), Positives = 66/142 (46%)

Query:   297 MPTLSKIVLVEYQFPPRLTHLSFSNTELMEDP---------------KSRASSSRKLTCG 341
             MP LSK    E  FP  LT L   +  L EDP               + ++ S +++ C 
Sbjct:   766 MPRLSK----EQHFPSHLTTLYLQHCRLEEDPMPILEKLHQLKELELRRKSFSGKEMVCS 821

Query:   342 SDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQ--PWCIKSLNKF 399
             S GFP L+ L +K +   E+W +   +MP L  L I  C  LK++P++  P  + S++ F
Sbjct:   822 SGGFPQLQKLSIKGLEEWEDWKVEESSMPVLHTLDIRDCRKLKQLPDEHLPSHLTSISLF 881

Query:   400 NCW-----WPQLELRQKLREFE 416
              C       P LE    L+E +
Sbjct:   882 FCCLEEDPMPTLERLVHLKELQ 903

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:504956184 AT1G58807 "AT1G58807" [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
 Identities = 34/97 (35%), Positives = 44/97 (45%)

Query:    15 LPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEG-FIPDNSEATAEKD-----LELLINR 68
             LP  LK CFLYL+ FP   EI    L   W AEG F P + +    +D     +E L+ R
Sbjct:   420 LPSYLKHCFLYLAHFPEDYEIKVENLSYYWAAEGIFQPRHYDGETIRDVGDVYIEELVRR 479

Query:    69 GFVDTRKRGAGGTINTCSVHGRCRPVLLSVAFEAKFV 105
               V + +        TC +H   R V L  A E  F+
Sbjct:   480 NMVISERDVKTSRFETCHLHDMMREVCLLKAKEENFL 516

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2827038 AT1G59124 "AT1G59124" [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
 Identities = 34/97 (35%), Positives = 44/97 (45%)

Query:    15 LPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEG-FIPDNSEATAEKD-----LELLINR 68
             LP  LK CFLYL+ FP   EI    L   W AEG F P + +    +D     +E L+ R
Sbjct:   420 LPSYLKHCFLYLAHFPEDYEIKVENLSYYWAAEGIFQPRHYDGETIRDVGDVYIEELVRR 479

Query:    69 GFVDTRKRGAGGTINTCSVHGRCRPVLLSVAFEAKFV 105
               V + +        TC +H   R V L  A E  F+
Sbjct:   480 NMVISERDVKTSRFETCHLHDMMREVCLLKAKEENFL 516

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2197409 LOV1 "LOCUS ORCHESTRATING VICTORIN EFFECTS1" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
 Identities = 36/99 (36%), Positives = 47/99 (47%)

Query:    12 YCRLPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKD-----LELLI 66
             Y  LP CLK CFLYL+ FP + EI  ++L+    AEG I  + + T  +D     LE L 
Sbjct:   294 YENLPMCLKHCFLYLAHFPEYYEIHVKRLFNYLAAEGIITSSDDGTTIQDKGEDYLEELA 353

Query:    67 NRGFVDTRKRGAGGTINTCSVHGRCRPVLLSVAFEAKFV 105
              R  +   K         C +H   R V LS A E  F+
Sbjct:   354 RRNMITIDKNYMFLRKKHCQMHDMMREVCLSKAKEENFL 392

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0002238 "response to molecule of fungal origin" evidence=IEP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:504956186 AT1G58602 [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
 Identities = 46/154 (29%), Positives = 67/154 (43%)

Query:   290 KLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKS---------------RASS 334
             +L  E  MP LSK    E  FP  LT L   +  L EDP                 ++ S
Sbjct:   757 RLRLELYMPRLSK----EQHFPSHLTTLYLQHCRLEEDPMPILEKLLQLKELELGHKSFS 812

Query:   335 SRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQ--PWC 392
              +K+ C S GFP L+ L +  +   E+W +   +MP L  L I  C  LK++P++  P  
Sbjct:   813 GKKMVCSSCGFPQLQKLSISGLKEWEDWKVEESSMPLLLTLNIFDCRKLKQLPDEHLPSH 872

Query:   393 IKSLNKFNCWW----PQLELRQKLREFEDKEQYG 422
             + +++   C      P LE    L+E    E  G
Sbjct:   873 LTAISLKKCGLEDPIPTLERLVHLKELSLSELCG 906

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2037639 AT1G58390 "AT1G58390" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 4.8e-10, Sum P(3) = 4.8e-10
 Identities = 33/97 (34%), Positives = 45/97 (46%)

Query:   307 EYQFPPRLTHLSFSNTELMEDPKS--------------RAS-SSRKLTCGSDGFPNLKVL 351
             +  FP RLT +  S   L EDP                + S   R++ C   GFP LK L
Sbjct:   766 QQHFPSRLTFVKLSECGLEEDPMPILEKLLHLKGVILLKGSYCGRRMVCSGGGFPQLKKL 825

Query:   352 HLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPE 388
              +  +   EEW +  G+MP LE L I  C  LK++P+
Sbjct:   826 EIVGLNKWEEWLVEEGSMPLLETLSILDCEELKEIPD 862

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	430
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	3e-07

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 22/42 (52%), Positives = 26/42 (61%)

Query: 10  FKYCRLPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIP 51
             Y  LP  LK CFLYL++FP    I   QL +LWIAEGF+ 
Sbjct: 240 LSYDNLPMHLKRCFLYLALFPEDYNIRKEQLIKLWIAEGFVI 281

Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	430
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.88
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.87
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.87
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.82
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.8
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.75
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.74
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.72
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.72
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.63
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.59
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.59
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.5
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.5
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.5
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.49
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.48
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.48
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.33
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.28
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.21
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.15
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.12
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.1
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.07
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.01
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.93
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.85
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.79
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.73
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.68
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.67
PLN03150	623	hypothetical protein; Provisional	98.6
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.59
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.58
KOG4341	483	consensus F-box protein containing LRR [General fu	98.45
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.42
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.39
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.38
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.35
PLN03150	623	hypothetical protein; Provisional	98.32
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.19
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.15
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.09
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.0
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.99
PRK15386	426	type III secretion protein GogB; Provisional	97.95
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.91
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.79
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.75
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.74
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.72
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.68
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.66
KOG4341	483	consensus F-box protein containing LRR [General fu	97.58
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.46
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.42
PRK15386	426	type III secretion protein GogB; Provisional	97.31
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.18
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.1
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.88
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.86
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.77
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.58
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.48
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.39
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.15
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.76
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.43
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.22
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.11
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.98
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.84
smart00370	26	LRR Leucine-rich repeats, outliers.	94.84
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.72
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.66
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.99
smart00370	26	LRR Leucine-rich repeats, outliers.	92.97
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.97
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.04

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-42  Score=358.45  Aligned_cols=385  Identities=28%  Similarity=0.327  Sum_probs=280.2

Q ss_pred             chhhhHHHHhhcCChhhhHHHHhhhcccCCCceechhHHHHHHHhcCCCCC-----ChHHHHHHHHHHHHHCCceeeeec
Q 047903            2 EKPLGLWYFKYCRLPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPD-----NSEATAEKDLELLINRGFVDTRKR   76 (430)
Q Consensus         2 ~~i~~~l~~sY~~L~~~~k~cfl~~~~fp~~~~i~~~~Li~~w~~~g~i~~-----~~~~~~~~~~~~L~~~~ll~~~~~   76 (430)
                      +.|+++|++|||+||+++|.||+|||+|||||+|++++|+.+|||+|||.+     .++|.|..|+.+|++++|+...+.
T Consensus       395 ~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~  474 (889)
T KOG4658|consen  395 ESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERD  474 (889)
T ss_pred             hhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccc
Confidence            478999999999999999999999999999999999999999999999976     899999999999999999998775


Q ss_pred             CCCCcEeEEEEChhHHHHHHHHhh-----hcCcEeeecCC-----CCCCCCCCeeEEEEeecCCCccccccc-cCcceEE
Q 047903           77 GAGGTINTCSVHGRCRPVLLSVAF-----EAKFVFFPFGD-----PKGKSRKNVKRINVFEKQSDFAHLDDY-DSHMHSL  145 (430)
Q Consensus        77 ~~~~~~~~~~mhd~~~~l~~~~~~-----~~~~~~~~~~~-----~~~~~~~~~r~L~l~~~~~~~~~~~~~-~~~L~~L  145 (430)
                      .  ++..+|+|||+|||+|.++++     +++.+.. .+.     .....+..+|+++++ ++.+..++... +++|++|
T Consensus       475 ~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~-~~~~~~~~~~~~~~~~~rr~s~~-~~~~~~~~~~~~~~~L~tL  550 (889)
T KOG4658|consen  475 E--GRKETVKMHDVVREMALWIASDFGKQEENQIVS-DGVGLSEIPQVKSWNSVRRMSLM-NNKIEHIAGSSENPKLRTL  550 (889)
T ss_pred             c--cceeEEEeeHHHHHHHHHHhccccccccceEEE-CCcCccccccccchhheeEEEEe-ccchhhccCCCCCCccceE
Confidence            4  567899999999999999999     6665544 321     122256678999999 88888788888 8899954


Q ss_pred             EEEecCCc--cccccc-ccccccCCceeecCCCC-CcccChHhhhcCCCccEEecCCCCccccchhhccCcccceeecCC
Q 047903          146 VLDLGSLV--LIHYLS-GIENLFLLRYLKLNIPS-LKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGS  221 (430)
Q Consensus       146 ~L~l~~~~--l~~lp~-~~~~l~~L~~L~L~~~~-i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~  221 (430)
                        -+.+|.  +..++. .|..++.|++|||++|. +.++|.+| ++|.+|++|+++++.+..+|.++++|++|.+|++..
T Consensus       551 --ll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~  627 (889)
T KOG4658|consen  551 --LLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEV  627 (889)
T ss_pred             --EEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhhhcccccCCCccccchHHHHHHhhheecccc
Confidence              444553  566664 47789999999999876 78999999 999999999999999999999999999999999998


Q ss_pred             cccCCCcC---ccCCCCcccceeecC--CCCcchhhhcCCCCCCceEEEEcccc-----------------------ccH
Q 047903          222 ITLPAHPR---KYCRSLENLNFISAL--HPCCCTEDILGRLPNLRNLRIWGDLS-----------------------YYQ  273 (430)
Q Consensus       222 ~~~~~~lp---~~l~~L~~L~~~~~~--~~~~~~~~~l~~l~~L~~L~l~~~~~-----------------------~~~  273 (430)
                      +.....+|   ..+++|+.|.+....  .......+ +..+.+|+.+.+.....                       ...
T Consensus       628 ~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~e-l~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~  706 (889)
T KOG4658|consen  628 TGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKE-LENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSK  706 (889)
T ss_pred             ccccccccchhhhcccccEEEeeccccccchhhHHh-hhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccccc
Confidence            87655456   557788877776554  23445556 66666666666544331                       011


Q ss_pred             HHHHHHhcCCCCCCEEEEecCCC----------------CCCceEEEE---------EcccccCCcceEEEEccccCCcc
Q 047903          274 SLLSQSLCTLTCLESLKLVSESK----------------MPTLSKIVL---------VEYQFPPRLTHLSFSNTELMEDP  328 (430)
Q Consensus       274 ~~~~~~l~~l~~L~~L~l~~~~~----------------~~~L~~L~l---------~~~~lp~~L~~L~L~~~~l~~~~  328 (430)
                      ...+.++..+.+|+.|.+.+...                ++++.++.+         ....+|++|+.|.+..|...++|
T Consensus       707 ~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~  786 (889)
T KOG4658|consen  707 RTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDI  786 (889)
T ss_pred             ceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccC
Confidence            12233455667778887776110                001111111         11234599999999999988876


Q ss_pred             cccc---cCCCeEEEcCCCCCcccEE-EEeeCCCCCceEEcCCccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEecC
Q 047903          329 KSRA---SSSRKLTCGSDGFPNLKVL-HLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWP  404 (430)
Q Consensus       329 ~~~~---~~~~~~~~~~~~~~~L~~L-~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~  404 (430)
                      +...   ......   ...|+++..+ .+.+...+..+....-.++.|+.+.+..||+++.+|       .+.++.+.+|
T Consensus       787 i~~~k~~~~l~~~---i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P-------~~~~~~i~~~  856 (889)
T KOG4658|consen  787 IPKLKALLELKEL---ILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLP-------LLSTLTIVGC  856 (889)
T ss_pred             CCHHHHhhhcccE---EecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCc-------cccccceecc
Confidence            5111   111111   2345566666 466666666665555567778888888888777766       3444555554

>PLN03210 Resistant to P

Probab=100.00  E-value=7.8e-33  Score=299.71  Aligned_cols=360  Identities=18%  Similarity=0.145  Sum_probs=228.5

Q ss_pred             hhhhHHHHhhcCChh-hhHHHHhhhcccCCCceechhHHHHHHHhcCCCCCChHHHHHHHHHHHHHCCceeeeecCCCCc
Q 047903            3 KPLGLWYFKYCRLPF-CLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKDLELLINRGFVDTRKRGAGGT   81 (430)
Q Consensus         3 ~i~~~l~~sY~~L~~-~~k~cfl~~~~fp~~~~i~~~~Li~~w~~~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~   81 (430)
                      +|+++|++|||+|++ ..|.||+|||+||.++.+   +.+..|.+.+.+.      ++..++.|++++|++...      
T Consensus       421 ~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~------~~~~l~~L~~ksLi~~~~------  485 (1153)
T PLN03210        421 KIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLD------VNIGLKNLVDKSLIHVRE------  485 (1153)
T ss_pred             HHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCC------chhChHHHHhcCCEEEcC------
Confidence            689999999999987 599999999999998754   3466777776552      344588999999998743      


Q ss_pred             EeEEEEChhHHHHHHHHhhhcC-------cEee------------------------------ecCCCCCCCCCCeeEEE
Q 047903           82 INTCSVHGRCRPVLLSVAFEAK-------FVFF------------------------------PFGDPKGKSRKNVKRIN  124 (430)
Q Consensus        82 ~~~~~mhd~~~~l~~~~~~~~~-------~~~~------------------------------~~~~~~~~~~~~~r~L~  124 (430)
                       ..++|||++|++|+.+++++.       +...                              .+....+....+++.|.
T Consensus       486 -~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~  564 (1153)
T PLN03210        486 -DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLK  564 (1153)
T ss_pred             -CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEE
Confidence             368999999999999987542       1100                              00000011223334443


Q ss_pred             Eee------------------------------cCCCccccccc-cCcceEEEEEecCCcccccccccccccCCceeecC
Q 047903          125 VFE------------------------------KQSDFAHLDDY-DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLN  173 (430)
Q Consensus       125 l~~------------------------------~~~~~~~~~~~-~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~  173 (430)
                      +..                              .+....+|..+ ..+|+  .|++++|.+..+|..+..+++|++|+++
T Consensus       565 ~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~--~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls  642 (1153)
T PLN03210        565 FYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLV--KLQMQGSKLEKLWDGVHSLTGLRNIDLR  642 (1153)
T ss_pred             EecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCc--EEECcCccccccccccccCCCCCEEECC
Confidence            331                              22222223333 33444  7888888888888888888888999988


Q ss_pred             CCC-CcccChHhhhcCCCccEEecCCC-CccccchhhccCcccceeecCCcccCCCcC--ccCCCCcccceeecCCCCcc
Q 047903          174 IPS-LKSLPSPLLSNLLNLYTLDMPFS-YIDHTADEFWKMNNLRHLNFGSITLPAHPR--KYCRSLENLNFISALHPCCC  249 (430)
Q Consensus       174 ~~~-i~~lp~~i~~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp--~~l~~L~~L~~~~~~~~~~~  249 (430)
                      ++. ++.+|. + +.+++|++|++++| .+..+|..++++++|++|++++|.....+|  ..+++|+.|.+.+|......
T Consensus       643 ~~~~l~~ip~-l-s~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~  720 (1153)
T PLN03210        643 GSKNLKEIPD-L-SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSF  720 (1153)
T ss_pred             CCCCcCcCCc-c-ccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccc
Confidence            765 667764 6 88889999999888 778888888889999999998876544477  45677777766655421111


Q ss_pred             hhhhcCCCCCCceEEEEcccc---------------------------------------------------ccHHHHHH
Q 047903          250 TEDILGRLPNLRNLRIWGDLS---------------------------------------------------YYQSLLSQ  278 (430)
Q Consensus       250 ~~~~l~~l~~L~~L~l~~~~~---------------------------------------------------~~~~~~~~  278 (430)
                      +.    ..++|+.|++.++..                                                   .....+|.
T Consensus       721 p~----~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~  796 (1153)
T PLN03210        721 PD----ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPS  796 (1153)
T ss_pred             cc----ccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccCh
Confidence            10    012333333333320                                                   02222333


Q ss_pred             HhcCCCCCCEEEEecCCCCCCceEEEEEcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCC
Q 047903          279 SLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLW  358 (430)
Q Consensus       279 ~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  358 (430)
                      +++.+++|+.|++++   |++++.++..+ .+ ++|+.|++++|.....          +   ....++|+.|++++ +.
T Consensus       797 si~~L~~L~~L~Ls~---C~~L~~LP~~~-~L-~sL~~L~Ls~c~~L~~----------~---p~~~~nL~~L~Ls~-n~  857 (1153)
T PLN03210        797 SIQNLHKLEHLEIEN---CINLETLPTGI-NL-ESLESLDLSGCSRLRT----------F---PDISTNISDLNLSR-TG  857 (1153)
T ss_pred             hhhCCCCCCEEECCC---CCCcCeeCCCC-Cc-cccCEEECCCCCcccc----------c---cccccccCEeECCC-CC
Confidence            344444444444443   33333332111 23 4444454444432110          0   01234566666665 45


Q ss_pred             CCceEEcCCccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903          359 LEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       359 l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  405 (430)
                      ++.+|...+.+++|+.|++.+|++++.+|..+..+++|+.+++++|+
T Consensus       858 i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        858 IEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            66666666778999999999999999999888889999999999998

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.88  E-value=1.3e-24  Score=206.63  Aligned_cols=248  Identities=20%  Similarity=0.255  Sum_probs=203.1

Q ss_pred             EEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceeecCCcccC
Q 047903          146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGSITLP  225 (430)
Q Consensus       146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~  225 (430)
                      +|||++|++.+.|..+..-+++-+|+|++|+|.++|.++|-+|..|-.|||++|.+..+|..+.+|..|++|+|++|.+.
T Consensus       107 ~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~  186 (1255)
T KOG0444|consen  107 ILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLN  186 (1255)
T ss_pred             eeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999877


Q ss_pred             CCcC----ccCCCCcccceeecCC-CCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCCCCCc
Q 047903          226 AHPR----KYCRSLENLNFISALH-PCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTL  300 (430)
Q Consensus       226 ~~lp----~~l~~L~~L~~~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L  300 (430)
                      . ..    .++++|+.|.+.+... ....+.. +..+.||+.++++.|   ....+|..+..+++|+.|+|++    +.+
T Consensus       187 h-fQLrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N---~Lp~vPecly~l~~LrrLNLS~----N~i  257 (1255)
T KOG0444|consen  187 H-FQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSEN---NLPIVPECLYKLRNLRRLNLSG----NKI  257 (1255)
T ss_pred             H-HHHhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhcccccc---CCCcchHHHhhhhhhheeccCc----Cce
Confidence            6 43    4556666666655554 3345566 888999999999998   5778899999999999999994    667


Q ss_pred             eEEEEEcccccCCcceEEEEccccCCccc--------------ccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEcC
Q 047903          301 SKIVLVEYQFPPRLTHLSFSNTELMEDPK--------------SRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGI  366 (430)
Q Consensus       301 ~~L~l~~~~lp~~L~~L~L~~~~l~~~~~--------------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~  366 (430)
                      +.|....+.- .+|++|+++.|++...|.              ....+-+.++...+.+.+|+.+...+ ++++-+|...
T Consensus       258 teL~~~~~~W-~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEgl  335 (1255)
T KOG0444|consen  258 TELNMTEGEW-ENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGL  335 (1255)
T ss_pred             eeeeccHHHH-hhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhh
Confidence            7777644455 788888888888877664              01111233444556677888888876 6777777777


Q ss_pred             CccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903          367 GAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       367 ~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  405 (430)
                      .-++.|+.|.++. +.+..+|+++.-++.|+.|++..+|
T Consensus       336 cRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  336 CRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             hhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCc
Confidence            7899999999985 5788999999999999999999998

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.87  E-value=8.7e-22  Score=213.02  Aligned_cols=269  Identities=19%  Similarity=0.192  Sum_probs=145.6

Q ss_pred             CCCeeEEEEeecCCCc-cccccc---cCcceEEEEEecCCccc-ccccccccccCCceeecCCCCCc-ccChHhhhcCCC
Q 047903          117 RKNVKRINVFEKQSDF-AHLDDY---DSHMHSLVLDLGSLVLI-HYLSGIENLFLLRYLKLNIPSLK-SLPSPLLSNLLN  190 (430)
Q Consensus       117 ~~~~r~L~l~~~~~~~-~~~~~~---~~~L~~L~L~l~~~~l~-~lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~~~L~~  190 (430)
                      .+.++.|.+. ++... .++..+   +.+|+  +|++++|.++ .+|.  +.+++|++|++++|.+. .+|..+ +++++
T Consensus        92 l~~L~~L~Ls-~n~~~~~ip~~~~~~l~~L~--~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~  165 (968)
T PLN00113         92 LPYIQTINLS-NNQLSGPIPDDIFTTSSSLR--YLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDI-GSFSS  165 (968)
T ss_pred             CCCCCEEECC-CCccCCcCChHHhccCCCCC--EEECcCCccccccCc--cccCCCCEEECcCCcccccCChHH-hcCCC
Confidence            3445555555 33322 233332   44455  5555555554 3332  34556666666666655 455555 66666


Q ss_pred             ccEEecCCCCcc-ccchhhccCcccceeecCCcccCCCcC---ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEE
Q 047903          191 LYTLDMPFSYID-HTADEFWKMNNLRHLNFGSITLPAHPR---KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIW  266 (430)
Q Consensus       191 L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~lp---~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~  266 (430)
                      |++|++++|.+. .+|..++++++|++|++++|.+.+.+|   +.+++|+.|.+..+......+.. ++.+++|++|++.
T Consensus       166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~  244 (968)
T PLN00113        166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLV  244 (968)
T ss_pred             CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECc
Confidence            777776666544 556666666667777666666665455   45555555555544444445555 6666777777776


Q ss_pred             ccccccHHHHHHHhcCCCCCCEEEEecCC---C-------CCCceEEEE-----------EcccccCCcceEEEEccccC
Q 047903          267 GDLSYYQSLLSQSLCTLTCLESLKLVSES---K-------MPTLSKIVL-----------VEYQFPPRLTHLSFSNTELM  325 (430)
Q Consensus       267 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~---~-------~~~L~~L~l-----------~~~~lp~~L~~L~L~~~~l~  325 (430)
                      +|.  .....+..+..+++|+.|+++.+.   .       +++|+.|++           ++..+ ++|+.|++++|.+.
T Consensus       245 ~n~--l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~l~~n~~~  321 (968)
T PLN00113        245 YNN--LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL-QNLEILHLFSNNFT  321 (968)
T ss_pred             Cce--eccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCC-CCCcEEECCCCccC
Confidence            665  444555666666677777666410   0       223333333           12233 34444444444332


Q ss_pred             CcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEcCCccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903          326 EDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  405 (430)
                      ..          .+.....+++|+.|+++++.-...++...+.+++|+.|++++|.....+|..+..+++|+.|++++|+
T Consensus       322 ~~----------~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~  391 (968)
T PLN00113        322 GK----------IPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS  391 (968)
T ss_pred             Cc----------CChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCE
Confidence            11          11223446666666666643323344444556667777777665445566666666677777776655

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.87  E-value=4.8e-22  Score=215.02  Aligned_cols=282  Identities=20%  Similarity=0.219  Sum_probs=195.4

Q ss_pred             CCCCeeEEEEeecCCCc-cccccccCcceEEEEEecCCccc-ccccccccccCCceeecCCCCCc-ccChHhhhcCCCcc
Q 047903          116 SRKNVKRINVFEKQSDF-AHLDDYDSHMHSLVLDLGSLVLI-HYLSGIENLFLLRYLKLNIPSLK-SLPSPLLSNLLNLY  192 (430)
Q Consensus       116 ~~~~~r~L~l~~~~~~~-~~~~~~~~~L~~L~L~l~~~~l~-~lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~~~L~~L~  192 (430)
                      ...++|+|.+. ++... .++...+++|+  +|++++|.+. .+|..++++++|++|++++|.+. .+|..+ +++++|+
T Consensus       116 ~l~~L~~L~Ls-~n~l~~~~p~~~l~~L~--~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~  191 (968)
T PLN00113        116 TSSSLRYLNLS-NNNFTGSIPRGSIPNLE--TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLE  191 (968)
T ss_pred             cCCCCCEEECc-CCccccccCccccCCCC--EEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCCC
Confidence            45678888888 55543 34444477888  8888888876 67778888888888888888876 667777 8888888


Q ss_pred             EEecCCCCcc-ccchhhccCcccceeecCCcccCCCcC---ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEcc
Q 047903          193 TLDMPFSYID-HTADEFWKMNNLRHLNFGSITLPAHPR---KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGD  268 (430)
Q Consensus       193 ~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~lp---~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  268 (430)
                      +|++++|.+. .+|..++++++|++|++++|.+.+.+|   +.+++|+.|.+.++......+.. ++++++|+.|++.++
T Consensus       192 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n  270 (968)
T PLN00113        192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQN  270 (968)
T ss_pred             eeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCC
Confidence            8888888665 578888888888888888888877677   66777777777666544455666 888888888888877


Q ss_pred             ccccHHHHHHHhcCCCCCCEEEEecC---CC-------CCCceEEEE-----------EcccccCCcceEEEEccccCCc
Q 047903          269 LSYYQSLLSQSLCTLTCLESLKLVSE---SK-------MPTLSKIVL-----------VEYQFPPRLTHLSFSNTELMED  327 (430)
Q Consensus       269 ~~~~~~~~~~~l~~l~~L~~L~l~~~---~~-------~~~L~~L~l-----------~~~~lp~~L~~L~L~~~~l~~~  327 (430)
                      .  .....+..+..+++|+.|+++++   +.       +++|+.|++           ++..+ ++|+.|++++|.+...
T Consensus       271 ~--l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~  347 (968)
T PLN00113        271 K--LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL-PRLQVLQLWSNKFSGE  347 (968)
T ss_pred             e--eeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcC-CCCCEEECcCCCCcCc
Confidence            5  44556667777888888888761   11       456777766           34567 8888888888877532


Q ss_pred             -cc--ccc-------cCCCe----EEEcCCCCCcccEEEEeeCCCCCceEEcCCccccccEeEEeecCCCCcCCCCCCCC
Q 047903          328 -PK--SRA-------SSSRK----LTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCI  393 (430)
Q Consensus       328 -~~--~~~-------~~~~~----~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l  393 (430)
                       |.  ...       .....    ++.....+++|+.|++.++.-...++...+.+++|+.|++.+|.....+|..+..+
T Consensus       348 ~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l  427 (968)
T PLN00113        348 IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL  427 (968)
T ss_pred             CChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcC
Confidence             21  000       00000    01112234556666666533222334444567888888888877656778778888


Q ss_pred             CCCCEEEEecCh
Q 047903          394 KSLNKFNCWWPQ  405 (430)
Q Consensus       394 ~~L~~L~l~~~~  405 (430)
                      ++|+.|++++|.
T Consensus       428 ~~L~~L~Ls~N~  439 (968)
T PLN00113        428 PLVYFLDISNNN  439 (968)
T ss_pred             CCCCEEECcCCc
Confidence            888888888876

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.82  E-value=2.2e-21  Score=183.36  Aligned_cols=170  Identities=16%  Similarity=0.170  Sum_probs=127.2

Q ss_pred             CCCeeEEEEeecCCCccc-cccc--cCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCcc
Q 047903          117 RKNVKRINVFEKQSDFAH-LDDY--DSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLY  192 (430)
Q Consensus       117 ~~~~r~L~l~~~~~~~~~-~~~~--~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~  192 (430)
                      .+.+..|++. ++.+..+ .+.+  .+.||  +|||+.|.++.+| ..|..=.++++|+|++|.|+.+-..-|.++.+|.
T Consensus       124 sghl~~L~L~-~N~I~sv~se~L~~l~alr--slDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~  200 (873)
T KOG4194|consen  124 SGHLEKLDLR-HNLISSVTSEELSALPALR--SLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLL  200 (873)
T ss_pred             ccceeEEeee-ccccccccHHHHHhHhhhh--hhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchhe
Confidence            3456777777 5554433 2333  66677  9999999999888 5777778999999999999988766669999999


Q ss_pred             EEecCCCCccccchh-hccCcccceeecCCcccCCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEc
Q 047903          193 TLDMPFSYIDHTADE-FWKMNNLRHLNFGSITLPAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWG  267 (430)
Q Consensus       193 ~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  267 (430)
                      +|.|+.|.++.+|.- |++|++|+.|+|..|++.- +.    ..+++|+.|++-.++.+.-.-.. |-.+.++++|++..
T Consensus       201 tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri-ve~ltFqgL~Sl~nlklqrN~I~kL~DG~-Fy~l~kme~l~L~~  278 (873)
T KOG4194|consen  201 TLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI-VEGLTFQGLPSLQNLKLQRNDISKLDDGA-FYGLEKMEHLNLET  278 (873)
T ss_pred             eeecccCcccccCHHHhhhcchhhhhhccccceee-ehhhhhcCchhhhhhhhhhcCcccccCcc-eeeecccceeeccc
Confidence            999999999999864 7779999999999998875 43    56677777766655532222223 67788888888888


Q ss_pred             cccccHHHHHHHhcCCCCCCEEEEec
Q 047903          268 DLSYYQSLLSQSLCTLTCLESLKLVS  293 (430)
Q Consensus       268 ~~~~~~~~~~~~l~~l~~L~~L~l~~  293 (430)
                      |+  ....-..++.+++.|+.|+++.
T Consensus       279 N~--l~~vn~g~lfgLt~L~~L~lS~  302 (873)
T KOG4194|consen  279 NR--LQAVNEGWLFGLTSLEQLDLSY  302 (873)
T ss_pred             ch--hhhhhcccccccchhhhhccch
Confidence            86  4444456777888888888875

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.80  E-value=2.8e-21  Score=182.71  Aligned_cols=287  Identities=19%  Similarity=0.184  Sum_probs=196.3

Q ss_pred             CcEeeecCCCCCCCCCCeeEEEEeecCCCccccccccCcceEE-EEEecCCcccccc-cccccccCCceeecCCCCCccc
Q 047903          103 KFVFFPFGDPKGKSRKNVKRINVFEKQSDFAHLDDYDSHMHSL-VLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSL  180 (430)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~r~L~l~~~~~~~~~~~~~~~~L~~L-~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~l  180 (430)
                      +.+.. ++...+....++.+|.+. .+.+..+..+-+..|.+| +|.|+.|+++.+| ..|++|++|+.|+|..|+|..+
T Consensus       159 N~is~-i~~~sfp~~~ni~~L~La-~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv  236 (873)
T KOG4194|consen  159 NLISE-IPKPSFPAKVNIKKLNLA-SNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV  236 (873)
T ss_pred             chhhc-ccCCCCCCCCCceEEeec-cccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence            34444 555555555667788877 665554544443333333 7888888888777 4677788888888888877755


Q ss_pred             ChHhhhcCCCccEEecCCCCccccchh-hccCcccceeecCCcccCCCcC-c---cCCCCcccceeecCCCCcchhhhcC
Q 047903          181 PSPLLSNLLNLYTLDMPFSYIDHTADE-FWKMNNLRHLNFGSITLPAHPR-K---YCRSLENLNFISALHPCCCTEDILG  255 (430)
Q Consensus       181 p~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp-~---~l~~L~~L~~~~~~~~~~~~~~~l~  255 (430)
                      --.-|.+|++|+.|.|..|.|.++..+ |..+.++++|+|+.|++.. +. +   .+++|+.|++.++......+.. ..
T Consensus       237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~-vn~g~lfgLt~L~~L~lS~NaI~rih~d~-Ws  314 (873)
T KOG4194|consen  237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA-VNEGWLFGLTSLEQLDLSYNAIQRIHIDS-WS  314 (873)
T ss_pred             hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh-hhcccccccchhhhhccchhhhheeecch-hh
Confidence            333348888888888888888877766 7778888888888888776 55 3   4455555555555444455566 67


Q ss_pred             CCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEE-EcccccCCcceEEEEccccCCcccccccC
Q 047903          256 RLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVL-VEYQFPPRLTHLSFSNTELMEDPKSRASS  334 (430)
Q Consensus       256 ~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~~~~  334 (430)
                      ..++|++|+++.|.  ...-.+.+|..+..|+.|.|+.    +++..+.- .|..+ ++|++|||++|.+..-.     .
T Consensus       315 ftqkL~~LdLs~N~--i~~l~~~sf~~L~~Le~LnLs~----Nsi~~l~e~af~~l-ssL~~LdLr~N~ls~~I-----E  382 (873)
T KOG4194|consen  315 FTQKLKELDLSSNR--ITRLDEGSFRVLSQLEELNLSH----NSIDHLAEGAFVGL-SSLHKLDLRSNELSWCI-----E  382 (873)
T ss_pred             hcccceeEeccccc--cccCChhHHHHHHHhhhhcccc----cchHHHHhhHHHHh-hhhhhhcCcCCeEEEEE-----e
Confidence            77888888888886  4444556777788888888873    43443321 45678 89999999999874321     1


Q ss_pred             CCeEEEcCCCCCcccEEEEeeCCCCCceEEc-CCccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEe------cChHH
Q 047903          335 SRKLTCGSDGFPNLKVLHLKSMLWLEEWTMG-IGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCW------WPQLE  407 (430)
Q Consensus       335 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~------~~~~~  407 (430)
                      +  -.....++++|+.|.+.+ ++++.++.. ...+++|+.|++.+++....-|..+..+ .|++|.+.      +|.-.
T Consensus       383 D--aa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~  458 (873)
T KOG4194|consen  383 D--AAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLK  458 (873)
T ss_pred             c--chhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHH
Confidence            1  122345699999999998 778887643 3468999999999987555557788888 89998765      46644


Q ss_pred             HH
Q 047903          408 LR  409 (430)
Q Consensus       408 ~~  409 (430)
                      |.
T Consensus       459 Wl  460 (873)
T KOG4194|consen  459 WL  460 (873)
T ss_pred             HH
Confidence            43

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.75  E-value=1.2e-20  Score=179.72  Aligned_cols=263  Identities=17%  Similarity=0.176  Sum_probs=159.1

Q ss_pred             CCeeEEEEeecCCCccccccc--cCcceEEEEEecCCccc--ccccccccccCCceeecCCCCCcccChHhhhcCCCccE
Q 047903          118 KNVKRINVFEKQSDFAHLDDY--DSHMHSLVLDLGSLVLI--HYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYT  193 (430)
Q Consensus       118 ~~~r~L~l~~~~~~~~~~~~~--~~~L~~L~L~l~~~~l~--~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~  193 (430)
                      +++.+|++. .+....+...+  ++.||  .+++..|++.  .+|+.+..+..|..|+|+.|++++.|..+ ..-+++-+
T Consensus        55 qkLEHLs~~-HN~L~~vhGELs~Lp~LR--sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~L-E~AKn~iV  130 (1255)
T KOG0444|consen   55 QKLEHLSMA-HNQLISVHGELSDLPRLR--SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNL-EYAKNSIV  130 (1255)
T ss_pred             hhhhhhhhh-hhhhHhhhhhhccchhhH--HHhhhccccccCCCCchhcccccceeeecchhhhhhcchhh-hhhcCcEE
Confidence            345555555 33333333333  55666  6666667655  67777777777777777777777777777 77777777


Q ss_pred             EecCCCCccccchh-hccCcccceeecCCcccCCCcC---ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903          194 LDMPFSYIDHTADE-FWKMNNLRHLNFGSITLPAHPR---KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL  269 (430)
Q Consensus       194 L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp---~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  269 (430)
                      |+|++|+|..+|.. +.+|+.|-.||||+|++.. +|   ..+..|++|.+.++...-..... +..+++|+.|.+++.+
T Consensus       131 LNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~-LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ-LPsmtsL~vLhms~Tq  208 (1255)
T KOG0444|consen  131 LNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEM-LPPQIRRLSMLQTLKLSNNPLNHFQLRQ-LPSMTSLSVLHMSNTQ  208 (1255)
T ss_pred             EEcccCccccCCchHHHhhHhHhhhccccchhhh-cCHHHHHHhhhhhhhcCCChhhHHHHhc-Cccchhhhhhhccccc
Confidence            77777777777766 5677777777777777777 66   56666777766655543334445 5556666666666654


Q ss_pred             cccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEEEcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCccc
Q 047903          270 SYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLK  349 (430)
Q Consensus       270 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~  349 (430)
                       .....+|.++..+.+|+.++++    +++|..++-.+-.+ ++|+.|+|++|.+++..           ...+...+|+
T Consensus       209 -RTl~N~Ptsld~l~NL~dvDlS----~N~Lp~vPecly~l-~~LrrLNLS~N~iteL~-----------~~~~~W~~lE  271 (1255)
T KOG0444|consen  209 -RTLDNIPTSLDDLHNLRDVDLS----ENNLPIVPECLYKL-RNLRRLNLSGNKITELN-----------MTEGEWENLE  271 (1255)
T ss_pred             -chhhcCCCchhhhhhhhhcccc----ccCCCcchHHHhhh-hhhheeccCcCceeeee-----------ccHHHHhhhh
Confidence             2344556677777777777777    44444443233456 88888999988875532           2223344555


Q ss_pred             EEEEeeCCCCCceEEcCCccccccEeEEeecC-CCCcCCCCCCCCCCCCEEEEecC
Q 047903          350 VLHLKSMLWLEEWTMGIGAMPKLECLIINPCA-YLKKMPEQPWCIKSLNKFNCWWP  404 (430)
Q Consensus       350 ~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~-~l~~lp~~l~~l~~L~~L~l~~~  404 (430)
                      +|+++. +.+..+|.....+++|++|++.++. ....+|++++.+.+|+.+...++
T Consensus       272 tLNlSr-NQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN  326 (1255)
T KOG0444|consen  272 TLNLSR-NQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN  326 (1255)
T ss_pred             hhcccc-chhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc
Confidence            555554 4444444444445555555555432 11335555555555554444443

>PLN03210 Resistant to P

Probab=99.74  E-value=1.2e-17  Score=181.89  Aligned_cols=271  Identities=21%  Similarity=0.224  Sum_probs=186.2

Q ss_pred             CCeeEEEEeecCCCcc--cc-ccc--cCcceEEEEEecCCc------cc-cccccccccc-CCceeecCCCCCcccChHh
Q 047903          118 KNVKRINVFEKQSDFA--HL-DDY--DSHMHSLVLDLGSLV------LI-HYLSGIENLF-LLRYLKLNIPSLKSLPSPL  184 (430)
Q Consensus       118 ~~~r~L~l~~~~~~~~--~~-~~~--~~~L~~L~L~l~~~~------l~-~lp~~~~~l~-~L~~L~L~~~~i~~lp~~i  184 (430)
                      .+++.+++. -.....  +. +.+  +++|+  .|.+..+.      +. .+|..+..++ +||+|++.++.++.+|..+
T Consensus       532 ~~v~~i~l~-~~~~~~~~i~~~aF~~m~~L~--~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f  608 (1153)
T PLN03210        532 KKVLGITLD-IDEIDELHIHENAFKGMRNLL--FLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF  608 (1153)
T ss_pred             ceeeEEEec-cCccceeeecHHHHhcCcccc--EEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC
Confidence            456666665 333321  12 223  67777  55554432      22 5677777664 6999999999999998776


Q ss_pred             hhcCCCccEEecCCCCccccchhhccCcccceeecCCcccCCCcC--ccCCCCcccceeecCCCCcchhhhcCCCCCCce
Q 047903          185 LSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPR--KYCRSLENLNFISALHPCCCTEDILGRLPNLRN  262 (430)
Q Consensus       185 ~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp--~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~  262 (430)
                        ...+|+.|++++|++..+|.++..+++|+.|+++++.....+|  ..+++|+.|.+.+|......+.. ++.+++|+.
T Consensus       609 --~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~  685 (1153)
T PLN03210        609 --RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSS-IQYLNKLED  685 (1153)
T ss_pred             --CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchh-hhccCCCCE
Confidence              4689999999999999999888899999999999876444478  77888888888887765566777 888999999


Q ss_pred             EEEEccccccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEEEcccccCCcceEEEEccccCCccccc-ccC-------
Q 047903          263 LRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSR-ASS-------  334 (430)
Q Consensus       263 L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~-~~~-------  334 (430)
                      |++.+|.  ....+|..+ ++++|+.|++++   |..++.++    ..+++|+.|++++|.+...|... ...       
T Consensus       686 L~L~~c~--~L~~Lp~~i-~l~sL~~L~Lsg---c~~L~~~p----~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~  755 (1153)
T PLN03210        686 LDMSRCE--NLEILPTGI-NLKSLYRLNLSG---CSRLKSFP----DISTNISWLDLDETAIEEFPSNLRLENLDELILC  755 (1153)
T ss_pred             EeCCCCC--CcCccCCcC-CCCCCCEEeCCC---CCCccccc----cccCCcCeeecCCCcccccccccccccccccccc
Confidence            9999886  444555443 678889998887   55554432    12256666666666554433100 000       


Q ss_pred             ---CCeE--------EEcCCCCCcccEEEEeeCCCCCceEEcCCccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEec
Q 047903          335 ---SRKL--------TCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWW  403 (430)
Q Consensus       335 ---~~~~--------~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~  403 (430)
                         ...+        .......++|+.|++++++.+..+|...+.+++|+.|++.+|++++.+|..+ ++++|+.|++++
T Consensus       756 ~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~  834 (1153)
T PLN03210        756 EMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSG  834 (1153)
T ss_pred             ccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCC
Confidence               0000        0011224678888888877777777777788888888888888888888766 678888888888


Q ss_pred             Ch
Q 047903          404 PQ  405 (430)
Q Consensus       404 ~~  405 (430)
                      |.
T Consensus       835 c~  836 (1153)
T PLN03210        835 CS  836 (1153)
T ss_pred             CC
Confidence            76

syringae 6; Provisional

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.72  E-value=6.9e-20  Score=166.24  Aligned_cols=139  Identities=25%  Similarity=0.185  Sum_probs=80.3

Q ss_pred             EEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceeecCCcccC
Q 047903          146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGSITLP  225 (430)
Q Consensus       146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~  225 (430)
                      .+++.+|.+..+|+..-+++.|+.|+...|-++.+|+++ +.+.+|+.|+++.|++..+| +|..+..|++|+++.|.+.
T Consensus       164 ~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~l-g~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~  241 (565)
T KOG0472|consen  164 KLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPEL-GGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIE  241 (565)
T ss_pred             HhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhh-cchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHH
Confidence            566666666655544444666666666666666666666 66666666666666666666 3666666666666666666


Q ss_pred             CCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEec
Q 047903          226 AHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVS  293 (430)
Q Consensus       226 ~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~  293 (430)
                      - +|    ..+.++..|++.++.. ...+.+ +..+.+|..|+++++   ....+|.+++++ +|+.|-+.+
T Consensus       242 ~-lpae~~~~L~~l~vLDLRdNkl-ke~Pde-~clLrsL~rLDlSNN---~is~Lp~sLgnl-hL~~L~leG  306 (565)
T KOG0472|consen  242 M-LPAEHLKHLNSLLVLDLRDNKL-KEVPDE-ICLLRSLERLDLSNN---DISSLPYSLGNL-HLKFLALEG  306 (565)
T ss_pred             h-hHHHHhcccccceeeecccccc-ccCchH-HHHhhhhhhhcccCC---ccccCCcccccc-eeeehhhcC
Confidence            5 66    2333344444333321 234445 556666666676666   455556666666 666665543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.72  E-value=1.9e-20  Score=169.87  Aligned_cols=257  Identities=18%  Similarity=0.145  Sum_probs=212.2

Q ss_pred             eeEEEEeecCCCccccccc--cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecC
Q 047903          120 VKRINVFEKQSDFAHLDDY--DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMP  197 (430)
Q Consensus       120 ~r~L~l~~~~~~~~~~~~~--~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~  197 (430)
                      +..+.+. +++...+.+.+  +..+.  ||++.+|.+.++|++++.+..++.|+.+.|++.++|+.+ +.+.+|..|+.+
T Consensus        47 l~~lils-~N~l~~l~~dl~nL~~l~--vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i-~s~~~l~~l~~s  122 (565)
T KOG0472|consen   47 LQKLILS-HNDLEVLREDLKNLACLT--VLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQI-GSLISLVKLDCS  122 (565)
T ss_pred             hhhhhhc-cCchhhccHhhhccccee--EEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHH-hhhhhhhhhhcc
Confidence            4555666 66666566655  77777  999999999999999999999999999999999999999 999999999999


Q ss_pred             CCCccccchhhccCcccceeecCCcccCCCcC---ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHH
Q 047903          198 FSYIDHTADEFWKMNNLRHLNFGSITLPAHPR---KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQS  274 (430)
Q Consensus       198 ~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp---~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  274 (430)
                      +|.+..+|.+++.+..|..++..+|++.. +|   ..+.++..+...+.... ..+.+ .-.++.|++|+...+   ..+
T Consensus       123 ~n~~~el~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~-~l~~~-~i~m~~L~~ld~~~N---~L~  196 (565)
T KOG0472|consen  123 SNELKELPDSIGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLK-ALPEN-HIAMKRLKHLDCNSN---LLE  196 (565)
T ss_pred             ccceeecCchHHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccchh-hCCHH-HHHHHHHHhcccchh---hhh
Confidence            99999999999999999999999999998 88   44444555544444332 23333 344888999988887   788


Q ss_pred             HHHHHhcCCCCCCEEEEecCCCCCCceEEEEEcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEe
Q 047903          275 LLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLK  354 (430)
Q Consensus       275 ~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  354 (430)
                      .+|..++.+.+|+.|++.    -..++.++ .|++. ..|.+|.+..|++...|.          .....++++..|++.
T Consensus       197 tlP~~lg~l~~L~~LyL~----~Nki~~lP-ef~gc-s~L~Elh~g~N~i~~lpa----------e~~~~L~~l~vLDLR  260 (565)
T KOG0472|consen  197 TLPPELGGLESLELLYLR----RNKIRFLP-EFPGC-SLLKELHVGENQIEMLPA----------EHLKHLNSLLVLDLR  260 (565)
T ss_pred             cCChhhcchhhhHHHHhh----hcccccCC-CCCcc-HHHHHHHhcccHHHhhHH----------HHhcccccceeeecc
Confidence            899999999999999998    56777776 66777 889999999998765431          113468899999999


Q ss_pred             eCCCCCceEEcCCccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903          355 SMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       355 ~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  405 (430)
                      + +++++.|.+..-+.+|++|+++++ .+..+|..++++ .|+.|.+.|+|
T Consensus       261 d-Nklke~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  261 D-NKLKEVPDEICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             c-cccccCchHHHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCc
Confidence            8 889999988878899999999985 589999999999 99999999999

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.63  E-value=1.5e-15  Score=154.84  Aligned_cols=241  Identities=20%  Similarity=0.094  Sum_probs=135.7

Q ss_pred             eEEEEeecCCCccccccccCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCC
Q 047903          121 KRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSY  200 (430)
Q Consensus       121 r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~  200 (430)
                      ..|.+. ++....+|+.+.++++  .|++.+|.++.+|..   .++|++|++++|+++.+|..    .++|+.|++++|.
T Consensus       204 ~~LdLs-~~~LtsLP~~l~~~L~--~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N~  273 (788)
T PRK15387        204 AVLNVG-ESGLTTLPDCLPAHIT--TLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL----PPGLLELSIFSNP  273 (788)
T ss_pred             cEEEcC-CCCCCcCCcchhcCCC--EEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc----ccccceeeccCCc
Confidence            345555 4455556665555666  666677777666642   35667777777777766632    2455666666666


Q ss_pred             ccccchhhccCcccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHh
Q 047903          201 IDHTADEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSL  280 (430)
Q Consensus       201 l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l  280 (430)
                      +..+|...   .+|+.|++++|.+.. +|..+++|+.|.+.++...  .++. +  ..+|+.|.+.+|.   ...+|.  
T Consensus       274 L~~Lp~lp---~~L~~L~Ls~N~Lt~-LP~~p~~L~~LdLS~N~L~--~Lp~-l--p~~L~~L~Ls~N~---L~~LP~--  339 (788)
T PRK15387        274 LTHLPALP---SGLCKLWIFGNQLTS-LPVLPPGLQELSVSDNQLA--SLPA-L--PSELCKLWAYNNQ---LTSLPT--  339 (788)
T ss_pred             hhhhhhch---hhcCEEECcCCcccc-ccccccccceeECCCCccc--cCCC-C--cccccccccccCc---cccccc--
Confidence            65555422   345555555555555 5533444555544433221  1111 0  1234444444442   111111  


Q ss_pred             cCCCCCCEEEEecCC------CCCCceEEEE------EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcc
Q 047903          281 CTLTCLESLKLVSES------KMPTLSKIVL------VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNL  348 (430)
Q Consensus       281 ~~l~~L~~L~l~~~~------~~~~L~~L~l------~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L  348 (430)
                       ...+|+.|+++++.      .+++|+.|.+      .+..+|.+|+.|++++|.+...|              ...++|
T Consensus       340 -lp~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP--------------~l~s~L  404 (788)
T PRK15387        340 -LPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP--------------VLPSEL  404 (788)
T ss_pred             -cccccceEecCCCccCCCCCCCcccceehhhccccccCcccccccceEEecCCcccCCC--------------CcccCC
Confidence             01244555554310      0122333322      11222357788888888765433              123578


Q ss_pred             cEEEEeeCCCCCceEEcCCccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903          349 KVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       349 ~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  405 (430)
                      +.|++++ +.+..+|.   .+.+|+.|++++| +++.+|..+.++++|+.|++++|+
T Consensus       405 ~~LdLS~-N~LssIP~---l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        405 KELMVSG-NRLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             CEEEccC-CcCCCCCc---chhhhhhhhhccC-cccccChHHhhccCCCeEECCCCC
Confidence            9999998 55776653   2457889999985 588999999999999999999988

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.59  E-value=1.5e-15  Score=155.70  Aligned_cols=243  Identities=14%  Similarity=0.141  Sum_probs=171.1

Q ss_pred             CeeEEEEeecCCCccccccccCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCC
Q 047903          119 NVKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPF  198 (430)
Q Consensus       119 ~~r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~  198 (430)
                      +...|.+. +.....+|..+.++++  .|++++|.++.+|..+.  .+|++|++++|.++.+|..+ .  .+|+.|++++
T Consensus       179 ~~~~L~L~-~~~LtsLP~~Ip~~L~--~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l-~--~~L~~L~Ls~  250 (754)
T PRK15370        179 NKTELRLK-ILGLTTIPACIPEQIT--TLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATL-P--DTIQEMELSI  250 (754)
T ss_pred             CceEEEeC-CCCcCcCCcccccCCc--EEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhh-h--ccccEEECcC
Confidence            45677777 6666667776677788  88899999998887654  58999999999999998766 3  4789999999


Q ss_pred             CCccccchhhccCcccceeecCCcccCCCcC-ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHH
Q 047903          199 SYIDHTADEFWKMNNLRHLNFGSITLPAHPR-KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLS  277 (430)
Q Consensus       199 ~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp-~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  277 (430)
                      |.+..+|..+.  .+|+.|++++|.+.. +| .-.++|+.|.+.++... ..+.. +.  ++|+.|++++|.   ...++
T Consensus       251 N~L~~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~~sL~~L~Ls~N~Lt-~LP~~-lp--~sL~~L~Ls~N~---Lt~LP  320 (754)
T PRK15370        251 NRITELPERLP--SALQSLDLFHNKISC-LPENLPEELRYLSVYDNSIR-TLPAH-LP--SGITHLNVQSNS---LTALP  320 (754)
T ss_pred             CccCcCChhHh--CCCCEEECcCCccCc-cccccCCCCcEEECCCCccc-cCccc-ch--hhHHHHHhcCCc---cccCC
Confidence            98888888764  578999999998887 88 34457777776655432 12222 22  467788888775   22233


Q ss_pred             HHhcCCCCCCEEEEecCCCCCCceEEEEEcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCC
Q 047903          278 QSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSML  357 (430)
Q Consensus       278 ~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  357 (430)
                      ..+  .++|+.|++++    ..++.++   ..+|++|+.|++++|++...|             ....++|+.|++++ +
T Consensus       321 ~~l--~~sL~~L~Ls~----N~Lt~LP---~~l~~sL~~L~Ls~N~L~~LP-------------~~lp~~L~~LdLs~-N  377 (754)
T PRK15370        321 ETL--PPGLKTLEAGE----NALTSLP---ASLPPELQVLDVSKNQITVLP-------------ETLPPTITTLDVSR-N  377 (754)
T ss_pred             ccc--cccceeccccC----CccccCC---hhhcCcccEEECCCCCCCcCC-------------hhhcCCcCEEECCC-C
Confidence            222  25778888774    3344432   234478999999999875433             11236899999998 4


Q ss_pred             CCCceEEcCCccccccEeEEeecCCCCcCCCCCC----CCCCCCEEEEecCh
Q 047903          358 WLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPW----CIKSLNKFNCWWPQ  405 (430)
Q Consensus       358 ~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~----~l~~L~~L~l~~~~  405 (430)
                      ++..+|...  .++|+.|++++| ++..+|..+.    .++++..+++.++|
T Consensus       378 ~Lt~LP~~l--~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        378 ALTNLPENL--PAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             cCCCCCHhH--HHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence            576665432  347999999996 5778876543    35788999999988

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.59  E-value=2.2e-17  Score=133.47  Aligned_cols=167  Identities=22%  Similarity=0.250  Sum_probs=138.1

Q ss_pred             cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceee
Q 047903          139 DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLN  218 (430)
Q Consensus       139 ~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~  218 (430)
                      +++.+  .|-+++|.++.+|+.+..+.+|+.|++.+|+++++|.++ +.+++|+.|+++-|.+..+|.+|+.++.|++||
T Consensus        32 ~s~IT--rLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levld  108 (264)
T KOG0617|consen   32 MSNIT--RLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVLD  108 (264)
T ss_pred             hhhhh--hhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhh-hhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence            66666  788899999999999999999999999999999999999 999999999999999999999999999999999


Q ss_pred             cCCcccCCC-cCccCCCCcccceeecCC--CCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCC
Q 047903          219 FGSITLPAH-PRKYCRSLENLNFISALH--PCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSES  295 (430)
Q Consensus       219 l~~~~~~~~-lp~~l~~L~~L~~~~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  295 (430)
                      +++|++... +|+++-.+++|.-.+.+.  ....+.+ ++++++|+.|.+..+   ..-.+|..++.+..|+.|.+.+  
T Consensus       109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~d-vg~lt~lqil~lrdn---dll~lpkeig~lt~lrelhiqg--  182 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPD-VGKLTNLQILSLRDN---DLLSLPKEIGDLTRLRELHIQG--  182 (264)
T ss_pred             ccccccccccCCcchhHHHHHHHHHhcCCCcccCChh-hhhhcceeEEeeccC---chhhCcHHHHHHHHHHHHhccc--
Confidence            999998765 777766666665555553  3456778 999999999999888   5667788888888888888874  


Q ss_pred             CCCCceEEEEEcccccCCcceEEEEccc
Q 047903          296 KMPTLSKIVLVEYQFPPRLTHLSFSNTE  323 (430)
Q Consensus       296 ~~~~L~~L~l~~~~lp~~L~~L~L~~~~  323 (430)
                        ..|+.+       ||.|-.|++.++.
T Consensus       183 --nrl~vl-------ppel~~l~l~~~k  201 (264)
T KOG0617|consen  183 --NRLTVL-------PPELANLDLVGNK  201 (264)
T ss_pred             --ceeeec-------ChhhhhhhhhhhH
Confidence              445544       3666666666553

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.50  E-value=2.9e-16  Score=156.43  Aligned_cols=107  Identities=18%  Similarity=0.147  Sum_probs=72.4

Q ss_pred             CCeeEEEEeecCCCccccccc-cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEec
Q 047903          118 KNVKRINVFEKQSDFAHLDDY-DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDM  196 (430)
Q Consensus       118 ~~~r~L~l~~~~~~~~~~~~~-~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L  196 (430)
                      .++++|... .+......... ..+|.  .++++.|.++.+|.+++.+.+|..++...|.++.+|..+ ....+|+.|.+
T Consensus       219 ~~l~~L~a~-~n~l~~~~~~p~p~nl~--~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri-~~~~~L~~l~~  294 (1081)
T KOG0618|consen  219 PSLTALYAD-HNPLTTLDVHPVPLNLQ--YLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRI-SRITSLVSLSA  294 (1081)
T ss_pred             cchheeeec-cCcceeeccccccccce--eeecchhhhhcchHHHHhcccceEecccchhHHhhHHHH-hhhhhHHHHHh
Confidence            445566655 44443233333 45555  777777777777777777777777777777777777777 77777777777


Q ss_pred             CCCCccccchhhccCcccceeecCCcccCCCcC
Q 047903          197 PFSYIDHTADEFWKMNNLRHLNFGSITLPAHPR  229 (430)
Q Consensus       197 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp  229 (430)
                      ..|.+..+|....+++.|++|+|..|.+.. +|
T Consensus       295 ~~nel~yip~~le~~~sL~tLdL~~N~L~~-lp  326 (1081)
T KOG0618|consen  295 AYNELEYIPPFLEGLKSLRTLDLQSNNLPS-LP  326 (1081)
T ss_pred             hhhhhhhCCCcccccceeeeeeehhccccc-cc
Confidence            777777777766667777777777777666 44

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.50  E-value=2.1e-14  Score=147.33  Aligned_cols=225  Identities=18%  Similarity=0.206  Sum_probs=163.9

Q ss_pred             CCCCeeEEEEeecCCCccccccccCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEe
Q 047903          116 SRKNVKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLD  195 (430)
Q Consensus       116 ~~~~~r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~  195 (430)
                      .+..++.|.+. ++.+..++..+.++|+  .|++++|.++.+|..+.  .+|+.|++++|.+..+|..+ .  .+|+.|+
T Consensus       197 Ip~~L~~L~Ls-~N~LtsLP~~l~~nL~--~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l-~--s~L~~L~  268 (754)
T PRK15370        197 IPEQITTLILD-NNELKSLPENLQGNIK--TLYANSNQLTSIPATLP--DTIQEMELSINRITELPERL-P--SALQSLD  268 (754)
T ss_pred             cccCCcEEEec-CCCCCcCChhhccCCC--EEECCCCccccCChhhh--ccccEEECcCCccCcCChhH-h--CCCCEEE
Confidence            35578999999 8888878877778999  99999999999987654  47999999999999999877 4  5899999


Q ss_pred             cCCCCccccchhhccCcccceeecCCcccCCCcC-ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHH
Q 047903          196 MPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPR-KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQS  274 (430)
Q Consensus       196 L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp-~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  274 (430)
                      +++|+++.+|..+.  ++|++|++++|.+.. +| .-.++|+.|.+.++... ..+.. +  .++|+.|++.+|.   ..
T Consensus       269 Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt-~LP~~-l--~~sL~~L~Ls~N~---Lt  338 (754)
T PRK15370        269 LFHNKISCLPENLP--EELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLT-ALPET-L--PPGLKTLEAGENA---LT  338 (754)
T ss_pred             CcCCccCccccccC--CCCcEEECCCCcccc-CcccchhhHHHHHhcCCccc-cCCcc-c--cccceeccccCCc---cc
Confidence            99999999998654  589999999999998 88 33456777777665432 12222 2  3688999998885   23


Q ss_pred             HHHHHhcCCCCCCEEEEecCCCCCCceEEEEEcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEe
Q 047903          275 LLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLK  354 (430)
Q Consensus       275 ~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  354 (430)
                      .++..+.  ++|+.|++++    .+++.++   ..+|++|+.|++++|.+...|.             ...++|+.|+++
T Consensus       339 ~LP~~l~--~sL~~L~Ls~----N~L~~LP---~~lp~~L~~LdLs~N~Lt~LP~-------------~l~~sL~~LdLs  396 (754)
T PRK15370        339 SLPASLP--PELQVLDVSK----NQITVLP---ETLPPTITTLDVSRNALTNLPE-------------NLPAALQIMQAS  396 (754)
T ss_pred             cCChhhc--CcccEEECCC----CCCCcCC---hhhcCCcCEEECCCCcCCCCCH-------------hHHHHHHHHhhc
Confidence            3444442  6899999985    3444432   1334789999999998765431             112367778887


Q ss_pred             eCCCCCceEEcC----CccccccEeEEeecC
Q 047903          355 SMLWLEEWTMGI----GAMPKLECLIINPCA  381 (430)
Q Consensus       355 ~~~~l~~~~~~~----~~~~~L~~L~l~~c~  381 (430)
                      + +++..+|...    +.++++..|.+.+++
T Consensus       397 ~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        397 R-NNLVRLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             c-CCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence            7 5566554322    235777888888876

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.50  E-value=2.3e-16  Score=127.61  Aligned_cols=147  Identities=21%  Similarity=0.310  Sum_probs=132.1

Q ss_pred             CCCCeeEEEEeecCCCccccccc--cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccE
Q 047903          116 SRKNVKRINVFEKQSDFAHLDDY--DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYT  193 (430)
Q Consensus       116 ~~~~~r~L~l~~~~~~~~~~~~~--~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~  193 (430)
                      ....+.+|.++ .++...++..+  +.+|+  +|++.+|+++++|.++++++.||.|++.-|++..+|..+ +.++-|+.
T Consensus        31 ~~s~ITrLtLS-HNKl~~vppnia~l~nle--vln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgf-gs~p~lev  106 (264)
T KOG0617|consen   31 NMSNITRLTLS-HNKLTVVPPNIAELKNLE--VLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGF-GSFPALEV  106 (264)
T ss_pred             chhhhhhhhcc-cCceeecCCcHHHhhhhh--hhhcccchhhhcChhhhhchhhhheecchhhhhcCcccc-CCCchhhh
Confidence            35678899999 88888888888  99999  999999999999999999999999999999999999999 99999999


Q ss_pred             EecCCCCcc--ccchhhccCcccceeecCCcccCCCcC---ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEcc
Q 047903          194 LDMPFSYID--HTADEFWKMNNLRHLNFGSITLPAHPR---KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGD  268 (430)
Q Consensus       194 L~L~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~lp---~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  268 (430)
                      ||+.+|++.  .+|..|..+..|+-|+++.|.+.- +|   +.+++||.|.+.++.. ...+.+ ++.+++|++|.|.++
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe~-lp~dvg~lt~lqil~lrdndl-l~lpke-ig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI-LPPDVGKLTNLQILSLRDNDL-LSLPKE-IGDLTRLRELHIQGN  183 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcCCCccc-CChhhhhhcceeEEeeccCch-hhCcHH-HHHHHHHHHHhcccc
Confidence            999999665  789999999999999999999998 88   8888888887776652 367888 999999999999998


Q ss_pred             c
Q 047903          269 L  269 (430)
Q Consensus       269 ~  269 (430)
                      .
T Consensus       184 r  184 (264)
T KOG0617|consen  184 R  184 (264)
T ss_pred             e
Confidence            4

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.49  E-value=1.2e-15  Score=138.68  Aligned_cols=259  Identities=16%  Similarity=0.159  Sum_probs=152.9

Q ss_pred             CccccccccCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCccEEecCC-CCccccchh-
Q 047903          131 DFAHLDDYDSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPF-SYIDHTADE-  207 (430)
Q Consensus       131 ~~~~~~~~~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~-~~l~~lp~~-  207 (430)
                      ..++|..+.+...  .++|..|.|+.+| .+|+.+++||.|+|+.|+|+.|.+..|.++..|-.|-+.+ |+|+.+|.+ 
T Consensus        58 L~eVP~~LP~~tv--eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~  135 (498)
T KOG4237|consen   58 LTEVPANLPPETV--EIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA  135 (498)
T ss_pred             cccCcccCCCcce--EEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence            3446666555555  6777777777777 4777788888888888887777444447777777776666 577777765 


Q ss_pred             hccCcccceeecCCcccCCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc----------cccH
Q 047903          208 FWKMNNLRHLNFGSITLPAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL----------SYYQ  273 (430)
Q Consensus       208 i~~L~~L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~----------~~~~  273 (430)
                      |++|..|+.|.+.-|++.- ++    ..++++..|.+.++......-.. +..+..++.+.+..+.          ....
T Consensus       136 F~gL~slqrLllNan~i~C-ir~~al~dL~~l~lLslyDn~~q~i~~~t-f~~l~~i~tlhlA~np~icdCnL~wla~~~  213 (498)
T KOG4237|consen  136 FGGLSSLQRLLLNANHINC-IRQDALRDLPSLSLLSLYDNKIQSICKGT-FQGLAAIKTLHLAQNPFICDCNLPWLADDL  213 (498)
T ss_pred             hhhHHHHHHHhcChhhhcc-hhHHHHHHhhhcchhcccchhhhhhcccc-ccchhccchHhhhcCccccccccchhhhHH
Confidence            7777777777777777666 55    45555555555544321111112 4444455544443332          0011


Q ss_pred             HHHHHHhcCCCCCCEEEEec---CCC-----CCCceEEEE---------------EcccccCCcceEEEEccccCCcccc
Q 047903          274 SLLSQSLCTLTCLESLKLVS---ESK-----MPTLSKIVL---------------VEYQFPPRLTHLSFSNTELMEDPKS  330 (430)
Q Consensus       274 ~~~~~~l~~l~~L~~L~l~~---~~~-----~~~L~~L~l---------------~~~~lp~~L~~L~L~~~~l~~~~~~  330 (430)
                      ...+..++..+......+..   +.+     .-+++.+.-               .|..+ ++|++|+|++|.+....  
T Consensus       214 a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L-~~L~~lnlsnN~i~~i~--  290 (498)
T KOG4237|consen  214 AMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKL-PNLRKLNLSNNKITRIE--  290 (498)
T ss_pred             hhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhc-ccceEeccCCCccchhh--
Confidence            11122222222111111111   000     000111100               35567 99999999999886531  


Q ss_pred             cccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEc-CCccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903          331 RASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMG-IGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       331 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  405 (430)
                              .....+...+++|.+.. ++++.+... ...+..|+.|++.++..-.-.|..+..+.+|.+|.+-++|
T Consensus       291 --------~~aFe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np  357 (498)
T KOG4237|consen  291 --------DGAFEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP  357 (498)
T ss_pred             --------hhhhcchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence                    11234566788888887 556655322 2357899999999976445567788999999999997655

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.48  E-value=5.2e-14  Score=143.80  Aligned_cols=227  Identities=14%  Similarity=0.037  Sum_probs=151.5

Q ss_pred             CCCeeEEEEeecCCCccccccccCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEec
Q 047903          117 RKNVKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDM  196 (430)
Q Consensus       117 ~~~~r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L  196 (430)
                      +..++.|.+. ++.+..++. ..++|+  .|++++|.++.+|..   .++|+.|++++|.++.+|...    .+|+.|++
T Consensus       221 ~~~L~~L~L~-~N~Lt~LP~-lp~~Lk--~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp----~~L~~L~L  289 (788)
T PRK15387        221 PAHITTLVIP-DNNLTSLPA-LPPELR--TLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPALP----SGLCKLWI  289 (788)
T ss_pred             hcCCCEEEcc-CCcCCCCCC-CCCCCc--EEEecCCccCcccCc---ccccceeeccCCchhhhhhch----hhcCEEEC
Confidence            3468999999 777776654 367888  999999999988864   357889999999988887532    56778888


Q ss_pred             CCCCccccchhhccCcccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCC-CCCceEEEEccccccHHH
Q 047903          197 PFSYIDHTADEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRL-PNLRNLRIWGDLSYYQSL  275 (430)
Q Consensus       197 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~  275 (430)
                      ++|+++.+|..   .++|++|++++|.+.. +|....+|+.|.+.++..     .. +..+ .+|+.|++++|.   ...
T Consensus       290 s~N~Lt~LP~~---p~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L-----~~-LP~lp~~Lq~LdLS~N~---Ls~  356 (788)
T PRK15387        290 FGNQLTSLPVL---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQL-----TS-LPTLPSGLQELSVSDNQ---LAS  356 (788)
T ss_pred             cCCcccccccc---ccccceeECCCCcccc-CCCCcccccccccccCcc-----cc-ccccccccceEecCCCc---cCC
Confidence            88888888863   4678888999888887 774444555555544332     11 2222 367777777764   112


Q ss_pred             HHHHhcCCCCCCEEEEecCC------CCCCceEEEE------EcccccCCcceEEEEccccCCcccccccCCCeEEEcCC
Q 047903          276 LSQSLCTLTCLESLKLVSES------KMPTLSKIVL------VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSD  343 (430)
Q Consensus       276 ~~~~l~~l~~L~~L~l~~~~------~~~~L~~L~l------~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~  343 (430)
                      +|..   ..+|+.|+++.+.      .+.+|+.|++      .+...|++|+.|++++|.+...|              .
T Consensus       357 LP~l---p~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~LssIP--------------~  419 (788)
T PRK15387        357 LPTL---PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLP--------------M  419 (788)
T ss_pred             CCCC---CcccceehhhccccccCcccccccceEEecCCcccCCCCcccCCCEEEccCCcCCCCC--------------c
Confidence            2211   1234444443310      0234555554      12223378999999999886543              1


Q ss_pred             CCCcccEEEEeeCCCCCceEEcCCccccccEeEEeecCCCCc
Q 047903          344 GFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKK  385 (430)
Q Consensus       344 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~  385 (430)
                      .+.+|+.|++++ +++..+|...+.+++|+.|++++|+--..
T Consensus       420 l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        420 LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNPLSER  460 (788)
T ss_pred             chhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCCCCch
Confidence            234788899987 66888887777899999999999874333

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.48  E-value=9.1e-16  Score=152.91  Aligned_cols=240  Identities=21%  Similarity=0.207  Sum_probs=181.4

Q ss_pred             CCCCeeEEEEeecCCCccccccc--cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccE
Q 047903          116 SRKNVKRINVFEKQSDFAHLDDY--DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYT  193 (430)
Q Consensus       116 ~~~~~r~L~l~~~~~~~~~~~~~--~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~  193 (430)
                      .+.++.++++. .+....+++-+  +.+|.  .++..+|.+..+|..+.....|++|....|.++.+|+.. ++++.|++
T Consensus       239 ~p~nl~~~dis-~n~l~~lp~wi~~~~nle--~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~l-e~~~sL~t  314 (1081)
T KOG0618|consen  239 VPLNLQYLDIS-HNNLSNLPEWIGACANLE--ALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFL-EGLKSLRT  314 (1081)
T ss_pred             ccccceeeecc-hhhhhcchHHHHhcccce--EecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcc-cccceeee
Confidence            57789999998 66666677555  99999  999999999999999999999999999999999999988 99999999


Q ss_pred             EecCCCCccccchh-hccCcc-cceeecCCcccCCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEc
Q 047903          194 LDMPFSYIDHTADE-FWKMNN-LRHLNFGSITLPAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWG  267 (430)
Q Consensus       194 L~L~~~~l~~lp~~-i~~L~~-L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  267 (430)
                      |+|..|++..+|.. +..+.. |+.|+.+.|.+.. .|    ..++.|+.|.+.++.......+. +.++.+|+.|++++
T Consensus       315 LdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~-lp~~~e~~~~~Lq~LylanN~Ltd~c~p~-l~~~~hLKVLhLsy  392 (1081)
T KOG0618|consen  315 LDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLST-LPSYEENNHAALQELYLANNHLTDSCFPV-LVNFKHLKVLHLSY  392 (1081)
T ss_pred             eeehhccccccchHHHhhhhHHHHHHhhhhccccc-cccccchhhHHHHHHHHhcCcccccchhh-hccccceeeeeecc
Confidence            99999999999986 444444 8889888888887 77    56788888888888777777887 99999999999999


Q ss_pred             cccccHHHHH-HHhcCCCCCCEEEEecCCCCCCceEEEEEcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCC
Q 047903          268 DLSYYQSLLS-QSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFP  346 (430)
Q Consensus       268 ~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~  346 (430)
                      |.   ...+| ..+.+++.|+.|++++    +.|+.|...+..+ +.|++|...+|++...|            ....++
T Consensus       393 Nr---L~~fpas~~~kle~LeeL~LSG----NkL~~Lp~tva~~-~~L~tL~ahsN~l~~fP------------e~~~l~  452 (1081)
T KOG0618|consen  393 NR---LNSFPASKLRKLEELEELNLSG----NKLTTLPDTVANL-GRLHTLRAHSNQLLSFP------------ELAQLP  452 (1081)
T ss_pred             cc---cccCCHHHHhchHHhHHHhccc----chhhhhhHHHHhh-hhhHHHhhcCCceeech------------hhhhcC
Confidence            94   44444 5678888899999985    4555554434444 56666666666553221            234566


Q ss_pred             cccEEEEeeCCCCCceEEcCCc-cccccEeEEeecCC
Q 047903          347 NLKVLHLKSMLWLEEWTMGIGA-MPKLECLIINPCAY  382 (430)
Q Consensus       347 ~L~~L~l~~~~~l~~~~~~~~~-~~~L~~L~l~~c~~  382 (430)
                      +|+.++++. +++..+...... .|+|++|++++++.
T Consensus       453 qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  453 QLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             cceEEeccc-chhhhhhhhhhCCCcccceeeccCCcc
Confidence            666666664 555554333222 25666666666654

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.33  E-value=6.5e-12  Score=131.17  Aligned_cols=187  Identities=20%  Similarity=0.125  Sum_probs=137.7

Q ss_pred             ccccc-cCcceEEEEEecCCcccccccccccccCCceeecCCCC--CcccChHhhhcCCCccEEecCCC-Cccccchhhc
Q 047903          134 HLDDY-DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPS--LKSLPSPLLSNLLNLYTLDMPFS-YIDHTADEFW  209 (430)
Q Consensus       134 ~~~~~-~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~--i~~lp~~i~~~L~~L~~L~L~~~-~l~~lp~~i~  209 (430)
                      .++.. ....|  .+.+-+|.+..++.... .+.|+.|-+.+|.  +..++..+|..++.|++|||++| .+..+|..|+
T Consensus       516 ~~~~~~~~~~r--r~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~  592 (889)
T KOG4658|consen  516 IPQVKSWNSVR--RMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIG  592 (889)
T ss_pred             cccccchhhee--EEEEeccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHh
Confidence            44444 56667  77777788777776543 3479999999987  78888888899999999999999 8999999999


Q ss_pred             cCcccceeecCCcccCCCcC---ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCC
Q 047903          210 KMNNLRHLNFGSITLPAHPR---KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCL  286 (430)
Q Consensus       210 ~L~~L~~L~l~~~~~~~~lp---~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L  286 (430)
                      +|.+||+|+++++.+.. +|   +++..|..|++.........+.. ...+++|+.|.+..............+..+++|
T Consensus       593 ~Li~LryL~L~~t~I~~-LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i-~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L  670 (889)
T KOG4658|consen  593 ELVHLRYLDLSDTGISH-LPSGLGNLKKLIYLNLEVTGRLESIPGI-LLELQSLRVLRLPRSALSNDKLLLKELENLEHL  670 (889)
T ss_pred             hhhhhhcccccCCCccc-cchHHHHHHhhheeccccccccccccch-hhhcccccEEEeeccccccchhhHHhhhcccch
Confidence            99999999999999998 99   56666666666655543333444 666999999999876423444555667888888


Q ss_pred             CEEEEecCC----C---------------C---CCceEEEEEcccccCCcceEEEEccccCC
Q 047903          287 ESLKLVSES----K---------------M---PTLSKIVLVEYQFPPRLTHLSFSNTELME  326 (430)
Q Consensus       287 ~~L~l~~~~----~---------------~---~~L~~L~l~~~~lp~~L~~L~L~~~~l~~  326 (430)
                      +.+.....+    +               .   ...+.+...+..+ .+|+.|.+.+|...+
T Consensus       671 ~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l-~~L~~L~i~~~~~~e  731 (889)
T KOG4658|consen  671 ENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSL-GNLEELSILDCGISE  731 (889)
T ss_pred             hhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccc-cCcceEEEEcCCCch
Confidence            888776511    1               0   1222222245677 899999999998754

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.28  E-value=4.8e-13  Score=121.94  Aligned_cols=110  Identities=15%  Similarity=0.076  Sum_probs=74.7

Q ss_pred             CCCCeeEEEEeecCCCccccccc---cCcceEEEEEecCCccccc-ccccccccCCceeecCC-CCCcccChHhhhcCCC
Q 047903          116 SRKNVKRINVFEKQSDFAHLDDY---DSHMHSLVLDLGSLVLIHY-LSGIENLFLLRYLKLNI-PSLKSLPSPLLSNLLN  190 (430)
Q Consensus       116 ~~~~~r~L~l~~~~~~~~~~~~~---~~~L~~L~L~l~~~~l~~l-p~~~~~l~~L~~L~L~~-~~i~~lp~~i~~~L~~  190 (430)
                      .+.....+.+. .+.+..+|+..   +++||  .|||+.|.|+.+ |++|.++..|..|-+.+ |+|+.+|...|++|..
T Consensus        65 LP~~tveirLd-qN~I~~iP~~aF~~l~~LR--rLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~s  141 (498)
T KOG4237|consen   65 LPPETVEIRLD-QNQISSIPPGAFKTLHRLR--RLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSS  141 (498)
T ss_pred             CCCcceEEEec-cCCcccCChhhccchhhhc--eecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHH
Confidence            45566677777 66666666665   55566  777777777744 46777777776666555 6777777777777777


Q ss_pred             ccEEecCCCCccccchh-hccCcccceeecCCcccCCCcC
Q 047903          191 LYTLDMPFSYIDHTADE-FWKMNNLRHLNFGSITLPAHPR  229 (430)
Q Consensus       191 L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp  229 (430)
                      |+-|.+.-|++.-++.. +..|++|..|.+..|.+.. ++
T Consensus       142 lqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~-i~  180 (498)
T KOG4237|consen  142 LQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQS-IC  180 (498)
T ss_pred             HHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhh-hc
Confidence            77777777766655443 6677777777666666555 44

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.21  E-value=1.2e-12  Score=123.67  Aligned_cols=140  Identities=19%  Similarity=0.103  Sum_probs=74.4

Q ss_pred             cCCC-CCCceEEEEccccc--cHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEE-----EcccccCCcceEEEEccccC
Q 047903          254 LGRL-PNLRNLRIWGDLSY--YQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVL-----VEYQFPPRLTHLSFSNTELM  325 (430)
Q Consensus       254 l~~l-~~L~~L~l~~~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-----~~~~lp~~L~~L~L~~~~l~  325 (430)
                      +..+ ++|++|++.++.-.  ....+...+..+++|+.|++++    ..+..-.+     .+... ++|+.|++++|.+.
T Consensus       132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~----n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~  206 (319)
T cd00116         132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLAN----NGIGDAGIRALAEGLKAN-CNLEVLDLNNNGLT  206 (319)
T ss_pred             HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcC----CCCchHHHHHHHHHHHhC-CCCCEEeccCCccC
Confidence            4555 67777777777511  1223445566666777777764    11221000     12233 57788888777654


Q ss_pred             CcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEc--CC----ccccccEeEEeecCCC----CcCCCCCCCCCC
Q 047903          326 EDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMG--IG----AMPKLECLIINPCAYL----KKMPEQPWCIKS  395 (430)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~----~~~~L~~L~l~~c~~l----~~lp~~l~~l~~  395 (430)
                      ....      ..+......+++|+.|+++++ .+......  ..    ..+.|++|++.+|...    ..++..+..+++
T Consensus       207 ~~~~------~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~  279 (319)
T cd00116         207 DEGA------SALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKES  279 (319)
T ss_pred             hHHH------HHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCC
Confidence            3210      000111234677888888774 33321100  01    1367888888887522    123334455678


Q ss_pred             CCEEEEecCh
Q 047903          396 LNKFNCWWPQ  405 (430)
Q Consensus       396 L~~L~l~~~~  405 (430)
                      |+++++++|.
T Consensus       280 L~~l~l~~N~  289 (319)
T cd00116         280 LLELDLRGNK  289 (319)
T ss_pred             ccEEECCCCC
Confidence            8888888876

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.15  E-value=2.8e-12  Score=121.29  Aligned_cols=252  Identities=16%  Similarity=0.062  Sum_probs=145.4

Q ss_pred             cCcceEEEEEecCCccc-----ccccccccccCCceeecCCCCCcc-------cChHhhhcCCCccEEecCCCCcc-ccc
Q 047903          139 DSHMHSLVLDLGSLVLI-----HYLSGIENLFLLRYLKLNIPSLKS-------LPSPLLSNLLNLYTLDMPFSYID-HTA  205 (430)
Q Consensus       139 ~~~L~~L~L~l~~~~l~-----~lp~~~~~l~~L~~L~L~~~~i~~-------lp~~i~~~L~~L~~L~L~~~~l~-~lp  205 (430)
                      ..+++  +++++++.++     .++..+...+.|++|+++++.+..       ++..+ .++++|+.|++++|.+. ..+
T Consensus        22 l~~L~--~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~   98 (319)
T cd00116          22 LLCLQ--VLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGL-TKGCGLQELDLSDNALGPDGC   98 (319)
T ss_pred             Hhhcc--EEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHH-HhcCceeEEEccCCCCChhHH
Confidence            34455  7777777763     344555566667777777766542       22334 67777777777777655 344


Q ss_pred             hhhccCcc---cceeecCCcccCCC----cC---ccC-CCCcccceeecCCCCc----chhhhcCCCCCCceEEEEcccc
Q 047903          206 DEFWKMNN---LRHLNFGSITLPAH----PR---KYC-RSLENLNFISALHPCC----CTEDILGRLPNLRNLRIWGDLS  270 (430)
Q Consensus       206 ~~i~~L~~---L~~L~l~~~~~~~~----lp---~~l-~~L~~L~~~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~  270 (430)
                      ..+..+.+   |++|++++|.+...    +.   ..+ ++|+.|.+.++.....    .... +..+++|++|++.++.-
T Consensus        99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l  177 (319)
T cd00116          99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA-LRANRDLKELNLANNGI  177 (319)
T ss_pred             HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH-HHhCCCcCEEECcCCCC
Confidence            44544444   77777777776631    11   333 5666666666553311    2233 66677888888888761


Q ss_pred             c--cHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEE-----EcccccCCcceEEEEccccCCcccccccCCCeEEEcCC
Q 047903          271 Y--YQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVL-----VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSD  343 (430)
Q Consensus       271 ~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-----~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~  343 (430)
                      .  ....++..+...++|+.|++++   + .+.....     .+..+ ++|++|++++|.+.........  ..+   ..
T Consensus       178 ~~~~~~~l~~~l~~~~~L~~L~L~~---n-~i~~~~~~~l~~~~~~~-~~L~~L~ls~n~l~~~~~~~l~--~~~---~~  247 (319)
T cd00116         178 GDAGIRALAEGLKANCNLEVLDLNN---N-GLTDEGASALAETLASL-KSLEVLNLGDNNLTDAGAAALA--SAL---LS  247 (319)
T ss_pred             chHHHHHHHHHHHhCCCCCEEeccC---C-ccChHHHHHHHHHhccc-CCCCEEecCCCcCchHHHHHHH--HHH---hc
Confidence            1  1123445566667888888886   2 1211110     23456 8899999999876542110000  000   01


Q ss_pred             CCCcccEEEEeeCCCCCc-----eEEcCCccccccEeEEeecCCCCc----CCCCCCCC-CCCCEEEEecCh
Q 047903          344 GFPNLKVLHLKSMLWLEE-----WTMGIGAMPKLECLIINPCAYLKK----MPEQPWCI-KSLNKFNCWWPQ  405 (430)
Q Consensus       344 ~~~~L~~L~l~~~~~l~~-----~~~~~~~~~~L~~L~l~~c~~l~~----lp~~l~~l-~~L~~L~l~~~~  405 (430)
                      ..++|++|++.++. +..     +......+++|+.+++++|.--..    +...+... +.|+++++.++|
T Consensus       248 ~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         248 PNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             cCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence            34789999998853 331     111223467899999998763322    23334444 678888877665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.12  E-value=3e-12  Score=121.93  Aligned_cols=170  Identities=22%  Similarity=0.238  Sum_probs=110.9

Q ss_pred             EEEEeecCCCccccccc--cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCC
Q 047903          122 RINVFEKQSDFAHLDDY--DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFS  199 (430)
Q Consensus       122 ~L~l~~~~~~~~~~~~~--~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~  199 (430)
                      ...++ .+....+++.+  +..|.  .+.+..|.+..+|..++++..|.+|+|+.|++..+|..+ +.|+ |+.|.+++|
T Consensus        79 ~aDls-rNR~~elp~~~~~f~~Le--~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~l-C~lp-Lkvli~sNN  153 (722)
T KOG0532|consen   79 FADLS-RNRFSELPEEACAFVSLE--SLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGL-CDLP-LKVLIVSNN  153 (722)
T ss_pred             hhhcc-ccccccCchHHHHHHHHH--HHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhh-hcCc-ceeEEEecC
Confidence            33444 44444455555  66666  666777777778888888888888888888888888877 7776 788888888


Q ss_pred             CccccchhhccCcccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHH
Q 047903          200 YIDHTADEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQS  279 (430)
Q Consensus       200 ~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  279 (430)
                      +++.+|.+++.++.|.+||.+.|.+.. +|                     .. ++.+.+|+.|.+..+   ....+|..
T Consensus       154 kl~~lp~~ig~~~tl~~ld~s~nei~s-lp---------------------sq-l~~l~slr~l~vrRn---~l~~lp~E  207 (722)
T KOG0532|consen  154 KLTSLPEEIGLLPTLAHLDVSKNEIQS-LP---------------------SQ-LGYLTSLRDLNVRRN---HLEDLPEE  207 (722)
T ss_pred             ccccCCcccccchhHHHhhhhhhhhhh-ch---------------------HH-hhhHHHHHHHHHhhh---hhhhCCHH
Confidence            888888888877788888888887766 44                     33 455555555555544   33444444


Q ss_pred             hcCCCCCCEEEEecCCCCCCceEEEEEcccccCCcceEEEEccccCCcc
Q 047903          280 LCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDP  328 (430)
Q Consensus       280 l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~  328 (430)
                      +..+ .|..|+++    |+++..+++.|..+ ++|++|.|.+|.+...|
T Consensus       208 l~~L-pLi~lDfS----cNkis~iPv~fr~m-~~Lq~l~LenNPLqSPP  250 (722)
T KOG0532|consen  208 LCSL-PLIRLDFS----CNKISYLPVDFRKM-RHLQVLQLENNPLQSPP  250 (722)
T ss_pred             HhCC-ceeeeecc----cCceeecchhhhhh-hhheeeeeccCCCCCCh
Confidence            4433 35555555    55566665555566 66666666666665554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.10  E-value=7e-11  Score=99.66  Aligned_cols=105  Identities=24%  Similarity=0.276  Sum_probs=34.4

Q ss_pred             cCcceEEEEEecCCcccccccccc-cccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhh-ccCcccce
Q 047903          139 DSHMHSLVLDLGSLVLIHYLSGIE-NLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEF-WKMNNLRH  216 (430)
Q Consensus       139 ~~~L~~L~L~l~~~~l~~lp~~~~-~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i-~~L~~L~~  216 (430)
                      ..+++  .|+|+||.++.+. .++ .+.+|+.|++++|.|++++ .+ ..+++|++|++++|.|+.++..+ ..+++|++
T Consensus        18 ~~~~~--~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l-~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   18 PVKLR--ELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GL-PGLPRLKTLDLSNNRISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S--T-T-----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred             ccccc--ccccccccccccc-chhhhhcCCCEEECCCCCCcccc-Cc-cChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence            44556  7777888777653 344 5677888888888888774 45 77888888888888888776555 35788888


Q ss_pred             eecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903          217 LNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL  269 (430)
Q Consensus       217 L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  269 (430)
                      |++++|++.. +                   ..+.. ++.+++|+.|++.+|.
T Consensus        93 L~L~~N~I~~-l-------------------~~l~~-L~~l~~L~~L~L~~NP  124 (175)
T PF14580_consen   93 LYLSNNKISD-L-------------------NELEP-LSSLPKLRVLSLEGNP  124 (175)
T ss_dssp             EE-TTS---S-C-------------------CCCGG-GGG-TT--EEE-TT-G
T ss_pred             EECcCCcCCC-h-------------------HHhHH-HHcCCCcceeeccCCc
Confidence            8888887765 1                   12233 5556666666666664

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=1.4e-11  Score=113.99  Aligned_cols=212  Identities=20%  Similarity=0.150  Sum_probs=142.2

Q ss_pred             ccccccccccCCceeecCCCCCcccCh--HhhhcCCCccEEecCCCC---ccccchhhccCcccceeecCCcccCCCcC-
Q 047903          156 HYLSGIENLFLLRYLKLNIPSLKSLPS--PLLSNLLNLYTLDMPFSY---IDHTADEFWKMNNLRHLNFGSITLPAHPR-  229 (430)
Q Consensus       156 ~lp~~~~~l~~L~~L~L~~~~i~~lp~--~i~~~L~~L~~L~L~~~~---l~~lp~~i~~L~~L~~L~l~~~~~~~~lp-  229 (430)
                      ++...-+++++|+...|.++.+...+.  .. ..|++++.|||++|-   ...+-....+|++|+.|+++.|++..... 
T Consensus       112 ki~akQsn~kkL~~IsLdn~~V~~~~~~~~~-k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s  190 (505)
T KOG3207|consen  112 KIAAKQSNLKKLREISLDNYRVEDAGIEEYS-KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS  190 (505)
T ss_pred             HHHHHhhhHHhhhheeecCccccccchhhhh-hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc
Confidence            344444678889999999888876653  55 789999999999883   33444556789999999999998875322 


Q ss_pred             ---ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEE-
Q 047903          230 ---KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVL-  305 (430)
Q Consensus       230 ---~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-  305 (430)
                         ..++.|+.|.+..|+.+...+...+..+++|..|.+..|.  ...........+..|+.|+|++    +++-.++. 
T Consensus       191 ~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~--~~~~~~~~~~i~~~L~~LdLs~----N~li~~~~~  264 (505)
T KOG3207|consen  191 NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE--IILIKATSTKILQTLQELDLSN----NNLIDFDQG  264 (505)
T ss_pred             cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc--ccceecchhhhhhHHhhccccC----Ccccccccc
Confidence               5677888888888886666665546778889999988885  2222223334456788888875    33333332 


Q ss_pred             -EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEcC--CccccccEeEEeec
Q 047903          306 -VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGI--GAMPKLECLIINPC  380 (430)
Q Consensus       306 -~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~--~~~~~L~~L~l~~c  380 (430)
                       ..+++ +.|+.|+++.|.+.......+....    -...|++|++|++.. ++..+|+.-.  ..+++|+.|.+..+
T Consensus       265 ~~~~~l-~~L~~Lnls~tgi~si~~~d~~s~~----kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~~n  336 (505)
T KOG3207|consen  265 YKVGTL-PGLNQLNLSSTGIASIAEPDVESLD----KTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRITLN  336 (505)
T ss_pred             cccccc-cchhhhhccccCcchhcCCCccchh----hhcccccceeeeccc-Cccccccccchhhccchhhhhhcccc
Confidence             45677 8899999999887653211111111    135689999999987 5566664432  34667777776543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.01  E-value=3.5e-10  Score=95.43  Aligned_cols=124  Identities=19%  Similarity=0.154  Sum_probs=55.0

Q ss_pred             CCCeeEEEEeecCCCccccccc--cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEE
Q 047903          117 RKNVKRINVFEKQSDFAHLDDY--DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTL  194 (430)
Q Consensus       117 ~~~~r~L~l~~~~~~~~~~~~~--~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L  194 (430)
                      +.+.|.|++. ++.+..+..--  +.+|+  +|++++|.++.+. .+..+++|+.|++++|.|+++++.+...+++|+.|
T Consensus        18 ~~~~~~L~L~-~n~I~~Ie~L~~~l~~L~--~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   18 PVKLRELNLR-GNQISTIENLGATLDKLE--VLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL   93 (175)
T ss_dssp             -------------------S--TT-TT----EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred             cccccccccc-ccccccccchhhhhcCCC--EEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence            4567899999 77777554321  67888  9999999999885 57889999999999999999977663579999999


Q ss_pred             ecCCCCccccch--hhccCcccceeecCCcccCCCcC-------ccCCCCcccceeecCC
Q 047903          195 DMPFSYIDHTAD--EFWKMNNLRHLNFGSITLPAHPR-------KYCRSLENLNFISALH  245 (430)
Q Consensus       195 ~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~lp-------~~l~~L~~L~~~~~~~  245 (430)
                      ++++|+|..+..  .++.+++|++|++.+|.+.. -+       ..+++|+.|+...+..
T Consensus        94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~~~V~~  152 (175)
T PF14580_consen   94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDGQDVTE  152 (175)
T ss_dssp             E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETTEETTS
T ss_pred             ECcCCcCCChHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCCEEccH
Confidence            999998876643  37889999999999999887 34       5677777777666653

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.93  E-value=6.5e-10  Score=77.14  Aligned_cols=60  Identities=32%  Similarity=0.399  Sum_probs=42.6

Q ss_pred             cCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchh-hccCcccceeecCCccc
Q 047903          165 FLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADE-FWKMNNLRHLNFGSITL  224 (430)
Q Consensus       165 ~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~  224 (430)
                      ++|++|++++|+++.+|+..|.++++|++|++++|.++.+|.+ +.++++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3567777777777777766667777777777777777777653 67777777777777753

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.85  E-value=2.4e-09  Score=104.35  Aligned_cols=173  Identities=26%  Similarity=0.307  Sum_probs=128.1

Q ss_pred             cCcceEEEEEecCCccccccccccccc-CCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCccccee
Q 047903          139 DSHMHSLVLDLGSLVLIHYLSGIENLF-LLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHL  217 (430)
Q Consensus       139 ~~~L~~L~L~l~~~~l~~lp~~~~~l~-~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L  217 (430)
                      .+.++  .|++.++.++.++.....+. +|+.|++++|++..+|..+ +.+++|+.|++++|++.++|...+.++.|+.|
T Consensus       115 ~~~l~--~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L  191 (394)
T COG4886         115 LTNLT--SLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPL-RNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL  191 (394)
T ss_pred             cccee--EEecCCcccccCccccccchhhcccccccccchhhhhhhh-hccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence            45566  89999999999998888885 9999999999999998788 99999999999999999999877789999999


Q ss_pred             ecCCcccCCCcCc---cCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecC
Q 047903          218 NFGSITLPAHPRK---YCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSE  294 (430)
Q Consensus       218 ~l~~~~~~~~lp~---~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  294 (430)
                      ++++|.+.. +|.   ....|+.+...... ....+.. +..+.++..|.+.++.   ...++..+..+.+++.|+++. 
T Consensus       192 ~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~---~~~~~~~~~~l~~l~~L~~s~-  264 (394)
T COG4886         192 DLSGNKISD-LPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNK---LEDLPESIGNLSNLETLDLSN-  264 (394)
T ss_pred             eccCCcccc-CchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCce---eeeccchhccccccceecccc-
Confidence            999999998 882   44447777666553 1234444 6677777777766553   222245666777777777773 


Q ss_pred             CCCCCceEEEEEcccccCCcceEEEEccccCC
Q 047903          295 SKMPTLSKIVLVEYQFPPRLTHLSFSNTELME  326 (430)
Q Consensus       295 ~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~  326 (430)
                         ..+..++ .+..+ .+++.|+++++.+..
T Consensus       265 ---n~i~~i~-~~~~~-~~l~~L~~s~n~~~~  291 (394)
T COG4886         265 ---NQISSIS-SLGSL-TNLRELDLSGNSLSN  291 (394)
T ss_pred             ---ccccccc-ccccc-CccCEEeccCccccc
Confidence               3444443 24555 778888888776644

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.79  E-value=5.4e-09  Score=72.47  Aligned_cols=60  Identities=32%  Similarity=0.369  Sum_probs=54.3

Q ss_pred             CcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCc
Q 047903          140 SHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYI  201 (430)
Q Consensus       140 ~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l  201 (430)
                      ++|+  +|++++|.++.+| ..|.++++|++|++++|.++.+|+..|.++++|++|++++|++
T Consensus         1 p~L~--~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLE--SLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTES--EEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCc--EEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4567  8999999999998 5889999999999999999999877779999999999999964

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.73  E-value=9.3e-09  Score=100.24  Aligned_cols=165  Identities=25%  Similarity=0.256  Sum_probs=132.3

Q ss_pred             CCeeEEEEeecCCCccccccc--cC-cceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEE
Q 047903          118 KNVKRINVFEKQSDFAHLDDY--DS-HMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTL  194 (430)
Q Consensus       118 ~~~r~L~l~~~~~~~~~~~~~--~~-~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L  194 (430)
                      ..+..+.+. ++.+..++...  .. +|+  .|++++|.+..+|..++.+++|+.|+++.|+++++|... +.+++|+.|
T Consensus       116 ~~l~~L~l~-~n~i~~i~~~~~~~~~nL~--~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~-~~~~~L~~L  191 (394)
T COG4886         116 TNLTSLDLD-NNNITDIPPLIGLLKSNLK--ELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLL-SNLSNLNNL  191 (394)
T ss_pred             cceeEEecC-CcccccCccccccchhhcc--cccccccchhhhhhhhhccccccccccCCchhhhhhhhh-hhhhhhhhe
Confidence            468888888 77777777766  43 899  999999999999988999999999999999999999887 799999999


Q ss_pred             ecCCCCccccchhhccCcccceeecCCcccCCCcC---ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccc
Q 047903          195 DMPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPR---KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSY  271 (430)
Q Consensus       195 ~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp---~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  271 (430)
                      ++++|++..+|..+.....|++|.+++|.... ++   ..+.++..+....... ...+.. ++.+++++.|+++++.  
T Consensus       192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~~-~~~~~~-~~~l~~l~~L~~s~n~--  266 (394)
T COG4886         192 DLSGNKISDLPPEIELLSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKL-EDLPES-IGNLSNLETLDLSNNQ--  266 (394)
T ss_pred             eccCCccccCchhhhhhhhhhhhhhcCCccee-cchhhhhcccccccccCCcee-eeccch-hccccccceecccccc--
Confidence            99999999999987788889999999996554 44   5566666555222211 112455 8889999999999985  


Q ss_pred             cHHHHHHHhcCCCCCCEEEEec
Q 047903          272 YQSLLSQSLCTLTCLESLKLVS  293 (430)
Q Consensus       272 ~~~~~~~~l~~l~~L~~L~l~~  293 (430)
                       ...++. +..+.+++.|++++
T Consensus       267 -i~~i~~-~~~~~~l~~L~~s~  286 (394)
T COG4886         267 -ISSISS-LGSLTNLRELDLSG  286 (394)
T ss_pred             -cccccc-ccccCccCEEeccC
Confidence             333333 77888999999875

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.68  E-value=8.1e-10  Score=105.64  Aligned_cols=211  Identities=19%  Similarity=0.199  Sum_probs=130.0

Q ss_pred             EEEecCCccccccc-ccc-cccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceeecCCcc
Q 047903          146 VLDLGSLVLIHYLS-GIE-NLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGSIT  223 (430)
Q Consensus       146 ~L~l~~~~l~~lp~-~~~-~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~  223 (430)
                      +|.|++-.+..+|. ... .+.--...+++.|++.++|..+ +.+..|+.+.|..|.+..+|..+.++..|.++|++.|+
T Consensus        54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq  132 (722)
T KOG0532|consen   54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ  132 (722)
T ss_pred             ccccccchhhcCCCccccccccchhhhhccccccccCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch
Confidence            44555555555552 222 3344445666666666666666 66666777777666666666666677777777777666


Q ss_pred             cCCCcC--ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCCCCCce
Q 047903          224 LPAHPR--KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLS  301 (430)
Q Consensus       224 ~~~~lp--~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~  301 (430)
                      +.. +|  -..--|+.|-... ++....+.+ ++.+..|..|+.+.|   ....+++.++.+.+|+.|.++.    +++.
T Consensus       133 lS~-lp~~lC~lpLkvli~sN-Nkl~~lp~~-ig~~~tl~~ld~s~n---ei~slpsql~~l~slr~l~vrR----n~l~  202 (722)
T KOG0532|consen  133 LSH-LPDGLCDLPLKVLIVSN-NKLTSLPEE-IGLLPTLAHLDVSKN---EIQSLPSQLGYLTSLRDLNVRR----NHLE  202 (722)
T ss_pred             hhc-CChhhhcCcceeEEEec-CccccCCcc-cccchhHHHhhhhhh---hhhhchHHhhhHHHHHHHHHhh----hhhh
Confidence            666 55  1122233332222 223345666 787888899999988   5778888888998998888873    3444


Q ss_pred             EEEEEcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEc---CCccccccEeEEe
Q 047903          302 KIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMG---IGAMPKLECLIIN  378 (430)
Q Consensus       302 ~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~---~~~~~~L~~L~l~  378 (430)
                      +|.-....|  .|..||++.|++...           +.....+..|++|.+.+ +-+++-|..   .|...=-++|++.
T Consensus       203 ~lp~El~~L--pLi~lDfScNkis~i-----------Pv~fr~m~~Lq~l~Len-NPLqSPPAqIC~kGkVHIFKyL~~q  268 (722)
T KOG0532|consen  203 DLPEELCSL--PLIRLDFSCNKISYL-----------PVDFRKMRHLQVLQLEN-NPLQSPPAQICEKGKVHIFKYLSTQ  268 (722)
T ss_pred             hCCHHHhCC--ceeeeecccCceeec-----------chhhhhhhhheeeeecc-CCCCCChHHHHhccceeeeeeecch
Confidence            432122223  478888888877543           34456677888888886 445554433   2344445677777


Q ss_pred             ecC
Q 047903          379 PCA  381 (430)
Q Consensus       379 ~c~  381 (430)
                      .|.
T Consensus       269 A~q  271 (722)
T KOG0532|consen  269 ACQ  271 (722)
T ss_pred             hcc
Confidence            773

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.67  E-value=3.7e-09  Score=93.68  Aligned_cols=120  Identities=23%  Similarity=0.282  Sum_probs=59.5

Q ss_pred             EEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceeecCCcccC
Q 047903          146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGSITLP  225 (430)
Q Consensus       146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~  225 (430)
                      .+|+++|.++.+-.++.-++.+|.|+++.|++..+.. + ..|++|+.|||++|.+..+-..=.+|-+.++|.+++|.+.
T Consensus       288 elDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-L-a~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE  365 (490)
T KOG1259|consen  288 ELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-L-AELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIE  365 (490)
T ss_pred             hccccccchhhhhhhhhhccceeEEeccccceeeehh-h-hhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHh
Confidence            5566666655555555555556666666666555532 4 5556666666666555554443344555555555555554


Q ss_pred             CCcC--ccCCCCcccceeecCC-CCcchhhhcCCCCCCceEEEEccc
Q 047903          226 AHPR--KYCRSLENLNFISALH-PCCCTEDILGRLPNLRNLRIWGDL  269 (430)
Q Consensus       226 ~~lp--~~l~~L~~L~~~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~  269 (430)
                      . +.  +++-+|..|+..++.. ....++. +++++.|+.+.+.+|.
T Consensus       366 ~-LSGL~KLYSLvnLDl~~N~Ie~ldeV~~-IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  366 T-LSGLRKLYSLVNLDLSSNQIEELDEVNH-IGNLPCLETLRLTGNP  410 (490)
T ss_pred             h-hhhhHhhhhheeccccccchhhHHHhcc-cccccHHHHHhhcCCC
Confidence            4 32  2333333333333221 1223333 4555555555544443

>PLN03150 hypothetical protein; Provisional

Probab=98.60  E-value=8.7e-08  Score=98.24  Aligned_cols=83  Identities=22%  Similarity=0.337  Sum_probs=61.6

Q ss_pred             EEEecCCccc-ccccccccccCCceeecCCCCCc-ccChHhhhcCCCccEEecCCCCcc-ccchhhccCcccceeecCCc
Q 047903          146 VLDLGSLVLI-HYLSGIENLFLLRYLKLNIPSLK-SLPSPLLSNLLNLYTLDMPFSYID-HTADEFWKMNNLRHLNFGSI  222 (430)
Q Consensus       146 ~L~l~~~~l~-~lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~  222 (430)
                      .|+|++|.+. .+|..++.+++|+.|+|++|.+. .+|..+ +++++|+.|+|++|++. .+|..++++++|++|++++|
T Consensus       422 ~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~-~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N  500 (623)
T PLN03150        422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN  500 (623)
T ss_pred             EEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHH-hCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC
Confidence            6777777766 66677777777777777777776 667666 77777777777777666 56777777777777777777


Q ss_pred             ccCCCcC
Q 047903          223 TLPAHPR  229 (430)
Q Consensus       223 ~~~~~lp  229 (430)
                      .+.+.+|
T Consensus       501 ~l~g~iP  507 (623)
T PLN03150        501 SLSGRVP  507 (623)
T ss_pred             cccccCC
Confidence            7776666

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=1.4e-08  Score=94.38  Aligned_cols=149  Identities=17%  Similarity=0.097  Sum_probs=96.8

Q ss_pred             CCCCeeEEEEeecCCCccccc--cc--cCcceEEEEEecCCccccc---ccccccccCCceeecCCCCCcccCh--Hhhh
Q 047903          116 SRKNVKRINVFEKQSDFAHLD--DY--DSHMHSLVLDLGSLVLIHY---LSGIENLFLLRYLKLNIPSLKSLPS--PLLS  186 (430)
Q Consensus       116 ~~~~~r~L~l~~~~~~~~~~~--~~--~~~L~~L~L~l~~~~l~~l---p~~~~~l~~L~~L~L~~~~i~~lp~--~i~~  186 (430)
                      ..+++|.+++. +........  -.  ++++|  .|||++|-+...   -.....|++|+.|+++.|.+.....  .- .
T Consensus       119 n~kkL~~IsLd-n~~V~~~~~~~~~k~~~~v~--~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~-~  194 (505)
T KOG3207|consen  119 NLKKLREISLD-NYRVEDAGIEEYSKILPNVR--DLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT-L  194 (505)
T ss_pred             hHHhhhheeec-CccccccchhhhhhhCCcce--eecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch-h
Confidence            35568888888 777664442  22  88888  888888876632   2344578888888888888664321  12 4


Q ss_pred             cCCCccEEecCCCCcc--ccchhhccCcccceeecCCcccCC--CcC-ccCCCCcccceeecCC-CCcchhhhcCCCCCC
Q 047903          187 NLLNLYTLDMPFSYID--HTADEFWKMNNLRHLNFGSITLPA--HPR-KYCRSLENLNFISALH-PCCCTEDILGRLPNL  260 (430)
Q Consensus       187 ~L~~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~--~lp-~~l~~L~~L~~~~~~~-~~~~~~~~l~~l~~L  260 (430)
                      .+++|+.|.|++|.+.  .+-.....+|+|+.|++.+|....  ..+ ..+..|+.|++.++.. ....... .+.++.|
T Consensus       195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~-~~~l~~L  273 (505)
T KOG3207|consen  195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYK-VGTLPGL  273 (505)
T ss_pred             hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccc-cccccch
Confidence            5788888888888766  344445678888888888884221  022 5556666666665553 2223333 5677777


Q ss_pred             ceEEEEccc
Q 047903          261 RNLRIWGDL  269 (430)
Q Consensus       261 ~~L~l~~~~  269 (430)
                      +.|+++.++
T Consensus       274 ~~Lnls~tg  282 (505)
T KOG3207|consen  274 NQLNLSSTG  282 (505)
T ss_pred             hhhhccccC
Confidence            777777665

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.58  E-value=8e-09  Score=91.57  Aligned_cols=122  Identities=16%  Similarity=0.099  Sum_probs=103.9

Q ss_pred             CCCeeEEEEeecCCCccccccc--cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEE
Q 047903          117 RKNVKRINVFEKQSDFAHLDDY--DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTL  194 (430)
Q Consensus       117 ~~~~r~L~l~~~~~~~~~~~~~--~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L  194 (430)
                      ++.+..+.++ .+.+..+.+++  .+++|  +|++++|.+..+-. +..+++|..|||++|.++++-.-- .+|-|.++|
T Consensus       283 Wq~LtelDLS-~N~I~~iDESvKL~Pkir--~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh-~KLGNIKtL  357 (490)
T KOG1259|consen  283 WQELTELDLS-GNLITQIDESVKLAPKLR--RLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWH-LKLGNIKTL  357 (490)
T ss_pred             Hhhhhhcccc-ccchhhhhhhhhhcccee--EEeccccceeeehh-hhhcccceEeecccchhHhhhhhH-hhhcCEeee
Confidence            4567888888 77777788887  99999  99999999886644 889999999999999999885444 789999999


Q ss_pred             ecCCCCccccchhhccCcccceeecCCcccCCCcC-----ccCCCCcccceeecCC
Q 047903          195 DMPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPR-----KYCRSLENLNFISALH  245 (430)
Q Consensus       195 ~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp-----~~l~~L~~L~~~~~~~  245 (430)
                      .|.+|.+..+.. +++|-+|..||+++|++.. +.     ++++.|+.+.+.++..
T Consensus       358 ~La~N~iE~LSG-L~KLYSLvnLDl~~N~Ie~-ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  358 KLAQNKIETLSG-LRKLYSLVNLDLSSNQIEE-LDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             ehhhhhHhhhhh-hHhhhhheeccccccchhh-HHHhcccccccHHHHHhhcCCCc
Confidence            999999888865 8999999999999999987 54     8899999988877763

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.45  E-value=1.4e-08  Score=93.94  Aligned_cols=262  Identities=18%  Similarity=0.131  Sum_probs=151.0

Q ss_pred             cCcceEEEEEecCCc-cccc-ccccc-cccCCceeecCCCC-Cccc-ChHhhhcCCCccEEecCCC-Cccc--cchhhcc
Q 047903          139 DSHMHSLVLDLGSLV-LIHY-LSGIE-NLFLLRYLKLNIPS-LKSL-PSPLLSNLLNLYTLDMPFS-YIDH--TADEFWK  210 (430)
Q Consensus       139 ~~~L~~L~L~l~~~~-l~~l-p~~~~-~l~~L~~L~L~~~~-i~~l-p~~i~~~L~~L~~L~L~~~-~l~~--lp~~i~~  210 (430)
                      ++++.  .|++.+|. ++.. -.+++ .+.+|++|++..|. ++.. -..+-..+++|++++++|| .+..  +..-..+
T Consensus       163 CpnIe--hL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG  240 (483)
T KOG4341|consen  163 CPNIE--HLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG  240 (483)
T ss_pred             CCchh--hhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence            66666  55666665 3311 12333 56777788777743 5532 1212266778888888887 5543  2222445


Q ss_pred             CcccceeecCCcccCCCcC------ccCCCCcccceeecCC-CCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCC
Q 047903          211 MNNLRHLNFGSITLPAHPR------KYCRSLENLNFISALH-PCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTL  283 (430)
Q Consensus       211 L~~L~~L~l~~~~~~~~lp------~~l~~L~~L~~~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l  283 (430)
                      ...++.+.+.||.-.+ ..      +....+.++++..|.. +......+-.....|+.|+.+++.......+.+--.+.
T Consensus       241 ~~~l~~~~~kGC~e~~-le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~  319 (483)
T KOG4341|consen  241 CKELEKLSLKGCLELE-LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHC  319 (483)
T ss_pred             chhhhhhhhccccccc-HHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCC
Confidence            5556666555543322 11      2333333344334432 22222221344567778887777643333333444456


Q ss_pred             CCCCEEEEecCCCCCCceEEEE-Ecc-cccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCc
Q 047903          284 TCLESLKLVSESKMPTLSKIVL-VEY-QFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEE  361 (430)
Q Consensus       284 ~~L~~L~l~~~~~~~~L~~L~l-~~~-~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  361 (430)
                      .+|+.|.+..   |..+..... .++ +- +.|+.+++..|....+.        .+.......+.|+.|.+++|.....
T Consensus       320 ~~L~~l~l~~---c~~fsd~~ft~l~rn~-~~Le~l~~e~~~~~~d~--------tL~sls~~C~~lr~lslshce~itD  387 (483)
T KOG4341|consen  320 HNLQVLELSG---CQQFSDRGFTMLGRNC-PHLERLDLEECGLITDG--------TLASLSRNCPRLRVLSLSHCELITD  387 (483)
T ss_pred             CceEEEeccc---cchhhhhhhhhhhcCC-hhhhhhcccccceehhh--------hHhhhccCCchhccCChhhhhhhhh
Confidence            7777777776   444333321 111 33 78889988888654321        1222345788999999998765543


Q ss_pred             e-----EEcCCccccccEeEEeecCCCCc-CCCCCCCCCCCCEEEEecChHHHHHHhhhc
Q 047903          362 W-----TMGIGAMPKLECLIINPCAYLKK-MPEQPWCIKSLNKFNCWWPQLELRQKLREF  415 (430)
Q Consensus       362 ~-----~~~~~~~~~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~  415 (430)
                      -     .....++..|+.+++.+|+.+++ .-+.+...++|+.+++.+|.....+.++..
T Consensus       388 ~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~  447 (483)
T KOG4341|consen  388 EGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRF  447 (483)
T ss_pred             hhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHH
Confidence            3     22234678899999999997765 234566788999999999996666666653

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=1.5e-08  Score=89.88  Aligned_cols=103  Identities=20%  Similarity=0.187  Sum_probs=53.0

Q ss_pred             CCceeecCCCCCc--ccChHhhhcCCCccEEecCCCCcc-ccchhhccCcccceeecCCcccCCCc--C---ccCCCCcc
Q 047903          166 LLRYLKLNIPSLK--SLPSPLLSNLLNLYTLDMPFSYID-HTADEFWKMNNLRHLNFGSITLPAHP--R---KYCRSLEN  237 (430)
Q Consensus       166 ~L~~L~L~~~~i~--~lp~~i~~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~l--p---~~l~~L~~  237 (430)
                      .|++|||+...|+  .+.- +++.+.+|+.|.+.++.+. .+-..+.+-.+|+.|+++.+.-...-  .   .+++.|+.
T Consensus       186 Rlq~lDLS~s~it~stl~~-iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHG-ILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchhheeHHHHHH-HHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            4667777766655  3322 2366677777777666554 34445666666777766665433211  1   34444444


Q ss_pred             cceeecCCCCcchhhhcCC-CCCCceEEEEccc
Q 047903          238 LNFISALHPCCCTEDILGR-LPNLRNLRIWGDL  269 (430)
Q Consensus       238 L~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~  269 (430)
                      |.+..|......+..++.+ -++|+.|+++++.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r  297 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYR  297 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhH
Confidence            4444444322222221222 2456666666654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=3e-08  Score=87.95  Aligned_cols=182  Identities=19%  Similarity=0.170  Sum_probs=100.1

Q ss_pred             CccEEecCCCCcc--ccchhhccCcccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEc
Q 047903          190 NLYTLDMPFSYID--HTADEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWG  267 (430)
Q Consensus       190 ~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  267 (430)
                      .||+|||+...|+  .+..-+..+.+|+.|.+.|+.+..                     ..... +++=.+|+.|+++.
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD---------------------~I~~~-iAkN~~L~~lnlsm  243 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD---------------------PIVNT-IAKNSNLVRLNLSM  243 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc---------------------HHHHH-Hhccccceeecccc
Confidence            3777777776555  334446677777777777666665                     33444 55566677777776


Q ss_pred             cccccHHHHHHHhcCCCCCCEEEEecCCCC-CCceEEEEEcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCC
Q 047903          268 DLSYYQSLLSQSLCTLTCLESLKLVSESKM-PTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFP  346 (430)
Q Consensus       268 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~  346 (430)
                      +......+.-..+..++.|..|+|+|++.. +..+.   .+.+..++|+.|+|++|.-.-.       ...+..-....|
T Consensus       244 ~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv---~V~hise~l~~LNlsG~rrnl~-------~sh~~tL~~rcp  313 (419)
T KOG2120|consen  244 CSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTV---AVAHISETLTQLNLSGYRRNLQ-------KSHLSTLVRRCP  313 (419)
T ss_pred             ccccchhHHHHHHHhhhhHhhcCchHhhccchhhhH---HHhhhchhhhhhhhhhhHhhhh-------hhHHHHHHHhCC
Confidence            653333333444556666777777762211 01111   2233336677777777642100       000111124567


Q ss_pred             cccEEEEeeCCCCCce-EEcCCccccccEeEEeecCCCCcCCC---CCCCCCCCCEEEEecCh
Q 047903          347 NLKVLHLKSMLWLEEW-TMGIGAMPKLECLIINPCAYLKKMPE---QPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       347 ~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~lp~---~l~~l~~L~~L~l~~~~  405 (430)
                      +|.+|+++++..++.- ......|+.|++|.++.|-.+  .|.   .+...|+|.+|++.||-
T Consensus       314 ~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  314 NLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             ceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence            7777777776555431 111235777777777777533  222   34566777777777765

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.38  E-value=3.8e-07  Score=58.02  Aligned_cols=41  Identities=34%  Similarity=0.361  Sum_probs=28.1

Q ss_pred             cCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccch
Q 047903          165 FLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTAD  206 (430)
Q Consensus       165 ~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~  206 (430)
                      ++|++|++++|+|+++|+.+ ++|++|++|++++|.++.+|.
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l-~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPEL-SNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHG-TTCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCCCcccCchH-hCCCCCCEEEecCCCCCCCcC
Confidence            35777777777777777666 777777777777777766653

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.35  E-value=2e-07  Score=84.51  Aligned_cols=86  Identities=17%  Similarity=0.131  Sum_probs=59.2

Q ss_pred             cCcceEEEEEecCCccc-----ccccccccccCCceeecCCC--C--CcccChHh------hhcCCCccEEecCCCCcc-
Q 047903          139 DSHMHSLVLDLGSLVLI-----HYLSGIENLFLLRYLKLNIP--S--LKSLPSPL------LSNLLNLYTLDMPFSYID-  202 (430)
Q Consensus       139 ~~~L~~L~L~l~~~~l~-----~lp~~~~~l~~L~~L~L~~~--~--i~~lp~~i------~~~L~~L~~L~L~~~~l~-  202 (430)
                      ...++  .++++||.+.     .+-..+.+.++||.-+++.-  +  ..++|+.+      +..+++|++|+||+|.+. 
T Consensus        29 ~~s~~--~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~  106 (382)
T KOG1909|consen   29 MDSLT--KLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP  106 (382)
T ss_pred             cCceE--EEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence            55566  8999999976     34456777888999888862  1  22455432      256778999999999443 


Q ss_pred             ccch----hhccCcccceeecCCcccCC
Q 047903          203 HTAD----EFWKMNNLRHLNFGSITLPA  226 (430)
Q Consensus       203 ~lp~----~i~~L~~L~~L~l~~~~~~~  226 (430)
                      .-++    -+..+..|++|.|.+|-+..
T Consensus       107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~  134 (382)
T KOG1909|consen  107 KGIRGLEELLSSCTDLEELYLNNCGLGP  134 (382)
T ss_pred             cchHHHHHHHHhccCHHHHhhhcCCCCh
Confidence            2222    26778889999888887654

>PLN03150 hypothetical protein; Provisional

Probab=98.32  E-value=1.3e-06  Score=89.58  Aligned_cols=103  Identities=16%  Similarity=0.164  Sum_probs=85.7

Q ss_pred             eeEEEEeecCCCc-cccccc--cCcceEEEEEecCCccc-ccccccccccCCceeecCCCCCc-ccChHhhhcCCCccEE
Q 047903          120 VKRINVFEKQSDF-AHLDDY--DSHMHSLVLDLGSLVLI-HYLSGIENLFLLRYLKLNIPSLK-SLPSPLLSNLLNLYTL  194 (430)
Q Consensus       120 ~r~L~l~~~~~~~-~~~~~~--~~~L~~L~L~l~~~~l~-~lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~~~L~~L~~L  194 (430)
                      ++.|.+. ++... .++..+  +++|+  .|+|++|.+. .+|..++.+++|++|+|++|++. .+|..+ +++++|++|
T Consensus       420 v~~L~L~-~n~L~g~ip~~i~~L~~L~--~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l-~~L~~L~~L  495 (623)
T PLN03150        420 IDGLGLD-NQGLRGFIPNDISKLRHLQ--SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL-GQLTSLRIL  495 (623)
T ss_pred             EEEEECC-CCCccccCCHHHhCCCCCC--EEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHH-hcCCCCCEE
Confidence            6777777 55443 456666  88888  9999999997 88889999999999999999998 678888 999999999


Q ss_pred             ecCCCCcc-ccchhhccC-cccceeecCCcccCC
Q 047903          195 DMPFSYID-HTADEFWKM-NNLRHLNFGSITLPA  226 (430)
Q Consensus       195 ~L~~~~l~-~lp~~i~~L-~~L~~L~l~~~~~~~  226 (430)
                      +|++|.+. .+|..++.+ .++..+++.+|....
T Consensus       496 ~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc  529 (623)
T PLN03150        496 NLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC  529 (623)
T ss_pred             ECcCCcccccCChHHhhccccCceEEecCCcccc
Confidence            99999877 889887764 467788888886544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.19  E-value=1.4e-06  Score=55.40  Aligned_cols=38  Identities=26%  Similarity=0.333  Sum_probs=34.1

Q ss_pred             CCccEEecCCCCccccchhhccCcccceeecCCcccCC
Q 047903          189 LNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGSITLPA  226 (430)
Q Consensus       189 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~  226 (430)
                      ++|++|++++|+++.+|..+++|++|++|++++|.+..
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence            57999999999999999999999999999999999886

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.15  E-value=1.1e-06  Score=79.87  Aligned_cols=92  Identities=22%  Similarity=0.252  Sum_probs=54.1

Q ss_pred             hcCCCCCCceEEEEccc--cccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEE------EcccccCCcceEEEEcccc
Q 047903          253 ILGRLPNLRNLRIWGDL--SYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVL------VEYQFPPRLTHLSFSNTEL  324 (430)
Q Consensus       253 ~l~~l~~L~~L~l~~~~--~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l------~~~~lp~~L~~L~L~~~~l  324 (430)
                      ++..+++|+.|++.+|.  ..-...+...+..+++|+.|++++   |. ++.=-.      .-... |+|+.|.+.+|.+
T Consensus       208 al~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d---cl-l~~~Ga~a~~~al~~~~-p~L~vl~l~gNeI  282 (382)
T KOG1909|consen  208 ALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD---CL-LENEGAIAFVDALKESA-PSLEVLELAGNEI  282 (382)
T ss_pred             HHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc---cc-cccccHHHHHHHHhccC-CCCceeccCcchh
Confidence            37888999999999987  222334556777888899888886   11 000000      00123 7777888777776


Q ss_pred             CCcccccccCCCeEEEcCCCCCcccEEEEee
Q 047903          325 MEDPKSRASSSRKLTCGSDGFPNLKVLHLKS  355 (430)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  355 (430)
                      +.+..      ..+......-|.|+.|++++
T Consensus       283 t~da~------~~la~~~~ek~dL~kLnLng  307 (382)
T KOG1909|consen  283 TRDAA------LALAACMAEKPDLEKLNLNG  307 (382)
T ss_pred             HHHHH------HHHHHHHhcchhhHHhcCCc
Confidence            54321      00111123366777777776

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.09  E-value=1.1e-06  Score=78.16  Aligned_cols=82  Identities=18%  Similarity=0.308  Sum_probs=54.0

Q ss_pred             cccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEc--CCccccccEeEEeecCCCCcC
Q 047903          309 QFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMG--IGAMPKLECLIINPCAYLKKM  386 (430)
Q Consensus       309 ~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~~L~~L~l~~c~~l~~l  386 (430)
                      -+ |++..+-+..|.++...         -.-....||.+..|++.. +++.+|...  ...||.|..|.+.+.|....+
T Consensus       197 ~F-pnv~sv~v~e~PlK~~s---------~ek~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  197 IF-PNVNSVFVCEGPLKTES---------SEKGSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             hc-ccchheeeecCcccchh---------hcccCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccc
Confidence            35 88888888888775432         112345688888888876 566666422  246999999999998866555


Q ss_pred             CC------CCCCCCCCCEEEE
Q 047903          387 PE------QPWCIKSLNKFNC  401 (430)
Q Consensus       387 p~------~l~~l~~L~~L~l  401 (430)
                      -.      -+.++++++.|+=
T Consensus       266 ~~~err~llIaRL~~v~vLNG  286 (418)
T KOG2982|consen  266 RGGERRFLLIARLTKVQVLNG  286 (418)
T ss_pred             cCCcceEEEEeeccceEEecC
Confidence            32      2355666666643

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.00  E-value=1.6e-06  Score=68.44  Aligned_cols=82  Identities=12%  Similarity=0.141  Sum_probs=60.9

Q ss_pred             EEEecCCcccccccccc-cccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceeecCCccc
Q 047903          146 VLDLGSLVLIHYLSGIE-NLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGSITL  224 (430)
Q Consensus       146 ~L~l~~~~l~~lp~~~~-~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~  224 (430)
                      ..++++|.+.++|..|. .++..+.|++++|.|.++|.++ ..++.|+.|+++.|.+...|+-+..|.+|-.|+..+|..
T Consensus        57 ~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~-Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~  135 (177)
T KOG4579|consen   57 KISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEEL-AAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENAR  135 (177)
T ss_pred             EEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHH-hhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCcc
Confidence            66777777777776655 4557777778777777777776 777888888888777777777777777777777777776


Q ss_pred             CCCcC
Q 047903          225 PAHPR  229 (430)
Q Consensus       225 ~~~lp  229 (430)
                      .. +|
T Consensus       136 ~e-id  139 (177)
T KOG4579|consen  136 AE-ID  139 (177)
T ss_pred             cc-Cc
Confidence            66 65

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.99  E-value=5.5e-07  Score=88.18  Aligned_cols=233  Identities=22%  Similarity=0.250  Sum_probs=135.2

Q ss_pred             EEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceeecCCcccC
Q 047903          146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGSITLP  225 (430)
Q Consensus       146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~  225 (430)
                      .+.+..|.+..+-..+..+++|.+|++.+|+|..+...+ ..+++|++|++++|.|+.+.. +..++.|+.|++++|.+.
T Consensus        76 ~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l-~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~i~  153 (414)
T KOG0531|consen   76 ELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLL-SSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNLIS  153 (414)
T ss_pred             hhccchhhhhhhhcccccccceeeeeccccchhhcccch-hhhhcchheeccccccccccc-hhhccchhhheeccCcch
Confidence            666777777776666888999999999999999886546 889999999999999988866 777888999999999988


Q ss_pred             CCcC--ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCCCCCceEE
Q 047903          226 AHPR--KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKI  303 (430)
Q Consensus       226 ~~lp--~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L  303 (430)
                      . ++  ..+.+|+.+.+.++......... +..+.+++.+.+.++..  ...  ..+..+..+..+++..    ..+..+
T Consensus       154 ~-~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i--~~i--~~~~~~~~l~~~~l~~----n~i~~~  223 (414)
T KOG0531|consen  154 D-ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSI--REI--EGLDLLKKLVLLSLLD----NKISKL  223 (414)
T ss_pred             h-ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCch--hcc--cchHHHHHHHHhhccc----ccceec
Confidence            8 66  44666666666555431111100 14556667777776641  110  0111111111122221    122222


Q ss_pred             EEEcccccCC--cceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEcCCccccccEeEEeecC
Q 047903          304 VLVEYQFPPR--LTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCA  381 (430)
Q Consensus       304 ~l~~~~lp~~--L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~  381 (430)
                      . -+..+ ..  |+.++++++++...+           .....++.+..|++.+ +....+.. ....+.+..+...+.+
T Consensus       224 ~-~l~~~-~~~~L~~l~l~~n~i~~~~-----------~~~~~~~~l~~l~~~~-n~~~~~~~-~~~~~~~~~~~~~~~~  288 (414)
T KOG0531|consen  224 E-GLNEL-VMLHLRELYLSGNRISRSP-----------EGLENLKNLPVLDLSS-NRISNLEG-LERLPKLSELWLNDNK  288 (414)
T ss_pred             c-Ccccc-hhHHHHHHhcccCcccccc-----------ccccccccccccchhh-cccccccc-ccccchHHHhccCcch
Confidence            1 11122 22  788888888764321           1234566777777665 22222211 1123444444444433


Q ss_pred             CC---CcCCC-CCCCCCCCCEEEEecCh
Q 047903          382 YL---KKMPE-QPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       382 ~l---~~lp~-~l~~l~~L~~L~l~~~~  405 (430)
                      ..   ..... .....+++..+.+.+.+
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (414)
T KOG0531|consen  289 LALSEAISQEYITSAAPTLVTLTLELNP  316 (414)
T ss_pred             hcchhhhhccccccccccccccccccCc
Confidence            22   11111 24556778888887777

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.95  E-value=1.1e-05  Score=76.58  Aligned_cols=156  Identities=17%  Similarity=0.158  Sum_probs=87.0

Q ss_pred             cCcceEEEEEecCCcccccccccccccCCceeecCCCC-CcccChHhhhcCCCccEEecCCC-CccccchhhccCcccce
Q 047903          139 DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPS-LKSLPSPLLSNLLNLYTLDMPFS-YIDHTADEFWKMNNLRH  216 (430)
Q Consensus       139 ~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~-i~~lp~~i~~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~  216 (430)
                      +.+++  .|++++|.++.+|. +  -.+|+.|.+++|. ++.+|..+   ..+|++|++++| .+..+|..      |++
T Consensus        51 ~~~l~--~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~s------Le~  116 (426)
T PRK15386         51 ARASG--RLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPES------VRS  116 (426)
T ss_pred             hcCCC--EEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccccccc------cce
Confidence            66777  88888888888872 2  2358888988754 67777655   358899999988 77777754      566


Q ss_pred             eecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcC-CC-CCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecC
Q 047903          217 LNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILG-RL-PNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSE  294 (430)
Q Consensus       217 L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~-~l-~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  294 (430)
                      |+++++.... ++.-.++|+.|.+.....  ..... +. .+ ++|+.|.+.+|.  .. .+|..+.  .+|+.|+++. 
T Consensus       117 L~L~~n~~~~-L~~LPssLk~L~I~~~n~--~~~~~-lp~~LPsSLk~L~Is~c~--~i-~LP~~LP--~SLk~L~ls~-  186 (426)
T PRK15386        117 LEIKGSATDS-IKNVPNGLTSLSINSYNP--ENQAR-IDNLISPSLKTLSLTGCS--NI-ILPEKLP--ESLQSITLHI-  186 (426)
T ss_pred             EEeCCCCCcc-cccCcchHhheecccccc--ccccc-cccccCCcccEEEecCCC--cc-cCccccc--ccCcEEEecc-
Confidence            6666655433 222223344444322111  00011 11 12 568888888775  11 2222221  4677777653 


Q ss_pred             CCCCCceEEEEEcccccCCcceEEEEcc
Q 047903          295 SKMPTLSKIVLVEYQFPPRLTHLSFSNT  322 (430)
Q Consensus       295 ~~~~~L~~L~l~~~~lp~~L~~L~L~~~  322 (430)
                         .....+.+....+|+++ .|++.+|
T Consensus       187 ---n~~~sLeI~~~sLP~nl-~L~f~n~  210 (426)
T PRK15386        187 ---EQKTTWNISFEGFPDGL-DIDLQNS  210 (426)
T ss_pred             ---cccccccCccccccccc-Eechhhh
Confidence               11122222223455556 6666655

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.91  E-value=1.2e-05  Score=82.72  Aligned_cols=83  Identities=20%  Similarity=0.116  Sum_probs=43.2

Q ss_pred             ccCcccceeecCCcccCCCcC--ccCCCCcccceeecCC-CCcchhhhcCCCCCCceEEEEccccc----cHHHHHHHhc
Q 047903          209 WKMNNLRHLNFGSITLPAHPR--KYCRSLENLNFISALH-PCCCTEDILGRLPNLRNLRIWGDLSY----YQSLLSQSLC  281 (430)
Q Consensus       209 ~~L~~L~~L~l~~~~~~~~lp--~~l~~L~~L~~~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~----~~~~~~~~l~  281 (430)
                      .++++|..||+|++.+.. +-  +.+++|+.|.+.+... ......+ +..|++|+.|+++.....    ......+.-.
T Consensus       170 ~sFpNL~sLDIS~TnI~n-l~GIS~LknLq~L~mrnLe~e~~~~l~~-LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~  247 (699)
T KOG3665|consen  170 ASFPNLRSLDISGTNISN-LSGISRLKNLQVLSMRNLEFESYQDLID-LFNLKKLRVLDISRDKNNDDTKIIEQYLECGM  247 (699)
T ss_pred             hccCccceeecCCCCccC-cHHHhccccHHHHhccCCCCCchhhHHH-HhcccCCCeeeccccccccchHHHHHHHHhcc
Confidence            444445555555444444 33  4444444444444442 2244556 777888888888766511    1222333444


Q ss_pred             CCCCCCEEEEec
Q 047903          282 TLTCLESLKLVS  293 (430)
Q Consensus       282 ~l~~L~~L~l~~  293 (430)
                      .+++|+.|+.++
T Consensus       248 ~LpeLrfLDcSg  259 (699)
T KOG3665|consen  248 VLPELRFLDCSG  259 (699)
T ss_pred             cCccccEEecCC
Confidence            566666666665

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.79  E-value=3.7e-06  Score=82.41  Aligned_cols=104  Identities=19%  Similarity=0.299  Sum_probs=50.2

Q ss_pred             CCCeeEEEEeecCCCccccccc--cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEE
Q 047903          117 RKNVKRINVFEKQSDFAHLDDY--DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTL  194 (430)
Q Consensus       117 ~~~~r~L~l~~~~~~~~~~~~~--~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L  194 (430)
                      ..++..+.+. ++.+..+...+  +++|+  +|++++|.|+.+. .+..++.|+.|++++|.|+.+.. + ..+++|+.+
T Consensus        94 ~~~l~~l~l~-~n~i~~i~~~l~~~~~L~--~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~-~-~~l~~L~~l  167 (414)
T KOG0531|consen   94 LKSLEALDLY-DNKIEKIENLLSSLVNLQ--VLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISG-L-ESLKSLKLL  167 (414)
T ss_pred             ccceeeeecc-ccchhhcccchhhhhcch--heecccccccccc-chhhccchhhheeccCcchhccC-C-ccchhhhcc
Confidence            3445555555 44444333312  55555  5555555555442 23344445555555555555422 2 345555555


Q ss_pred             ecCCCCccccchh-hccCcccceeecCCcccCC
Q 047903          195 DMPFSYIDHTADE-FWKMNNLRHLNFGSITLPA  226 (430)
Q Consensus       195 ~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~  226 (430)
                      ++++|.+..+... ...+.+++.+.+.+|.+..
T Consensus       168 ~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~  200 (414)
T KOG0531|consen  168 DLSYNRIVDIENDELSELISLEELDLGGNSIRE  200 (414)
T ss_pred             cCCcchhhhhhhhhhhhccchHHHhccCCchhc
Confidence            5555555544432 3445555555555555443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.75  E-value=5.5e-07  Score=89.03  Aligned_cols=97  Identities=18%  Similarity=0.193  Sum_probs=54.6

Q ss_pred             CceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceeecCCcccCCCcC-ccCC--CCcccceeec
Q 047903          167 LRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPR-KYCR--SLENLNFISA  243 (430)
Q Consensus       167 L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp-~~l~--~L~~L~~~~~  243 (430)
                      |.+.+.++|.+..+-.++ .-++.|+.|+|++|+++.+. .+..+++|+||||++|.+.. +| -.+.  .|+.|.+.++
T Consensus       166 L~~a~fsyN~L~~mD~SL-qll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~L~~L~lrnN  242 (1096)
T KOG1859|consen  166 LATASFSYNRLVLMDESL-QLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRH-VPQLSMVGCKLQLLNLRNN  242 (1096)
T ss_pred             HhhhhcchhhHHhHHHHH-HHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhcc-ccccchhhhhheeeeeccc
Confidence            444555556665555555 66666777777777666665 36667777777777776666 66 1111  1444443332


Q ss_pred             CCCCcchhhhcCCCCCCceEEEEccc
Q 047903          244 LHPCCCTEDILGRLPNLRNLRIWGDL  269 (430)
Q Consensus       244 ~~~~~~~~~~l~~l~~L~~L~l~~~~  269 (430)
                      .  .....+ +.++.+|+.|++++|-
T Consensus       243 ~--l~tL~g-ie~LksL~~LDlsyNl  265 (1096)
T KOG1859|consen  243 A--LTTLRG-IENLKSLYGLDLSYNL  265 (1096)
T ss_pred             H--HHhhhh-HHhhhhhhccchhHhh
Confidence            2  133444 5555666666666653

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.74  E-value=6.7e-06  Score=73.32  Aligned_cols=203  Identities=16%  Similarity=0.156  Sum_probs=109.8

Q ss_pred             cCcceEEEEEecCCcccccc---cccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCcc--ccchhhccCcc
Q 047903          139 DSHMHSLVLDLGSLVLIHYL---SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYID--HTADEFWKMNN  213 (430)
Q Consensus       139 ~~~L~~L~L~l~~~~l~~lp---~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~--~lp~~i~~L~~  213 (430)
                      +.+++  .+||.+|.++...   ..+.+|+.|++|+++.|++..-..+.=..+.+|++|.|.++.+.  .....+..+|.
T Consensus        70 ~~~v~--elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   70 VTDVK--ELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             hhhhh--hhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            67777  9999999987443   44568999999999999865321111035689999999988544  55556788999


Q ss_pred             cceeecCCcccCCC-cC-----ccCCCCcccceeecCC-CCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCC
Q 047903          214 LRHLNFGSITLPAH-PR-----KYCRSLENLNFISALH-PCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCL  286 (430)
Q Consensus       214 L~~L~l~~~~~~~~-lp-----~~l~~L~~L~~~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L  286 (430)
                      ++.|+++.|.+..- +.     ..-+.+.+|....|.. ........-..++++..+-+..+. ............++.+
T Consensus       148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~  226 (418)
T KOG2982|consen  148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEKGSEPFPSL  226 (418)
T ss_pred             hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhcccCCCCCcc
Confidence            99999999865541 11     2223444444444431 000111102334556555555552 0111112223333444


Q ss_pred             CEEEEecCCCCCCceEEEE--EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEE
Q 047903          287 ESLKLVSESKMPTLSKIVL--VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHL  353 (430)
Q Consensus       287 ~~L~l~~~~~~~~L~~L~l--~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  353 (430)
                      .-|.|+.    .++-+..-  .+..+ +.|..|.++++.+.+.-    ..++....-.+.+++++.|+=
T Consensus       227 ~~LnL~~----~~idswasvD~Ln~f-~~l~dlRv~~~Pl~d~l----~~~err~llIaRL~~v~vLNG  286 (418)
T KOG2982|consen  227 SCLNLGA----NNIDSWASVDALNGF-PQLVDLRVSENPLSDPL----RGGERRFLLIARLTKVQVLNG  286 (418)
T ss_pred             hhhhhcc----cccccHHHHHHHcCC-chhheeeccCCcccccc----cCCcceEEEEeeccceEEecC
Confidence            3444432    11111110  33466 77777777777654321    012222333445666666653

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.72  E-value=9.9e-07  Score=87.27  Aligned_cols=121  Identities=14%  Similarity=0.084  Sum_probs=84.8

Q ss_pred             CCCCeeEEEEeecCCCccccccc--cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChH-hhhcCCCcc
Q 047903          116 SRKNVKRINVFEKQSDFAHLDDY--DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSP-LLSNLLNLY  192 (430)
Q Consensus       116 ~~~~~r~L~l~~~~~~~~~~~~~--~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~-i~~~L~~L~  192 (430)
                      .+-++...++. .+....+.+++  ++.++  .|+|++|.+++.- .+..+++|++|||++|.+..+|.- . ..+. |+
T Consensus       162 ~Wn~L~~a~fs-yN~L~~mD~SLqll~ale--~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~-~gc~-L~  235 (1096)
T KOG1859|consen  162 VWNKLATASFS-YNRLVLMDESLQLLPALE--SLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSM-VGCK-LQ  235 (1096)
T ss_pred             hhhhHhhhhcc-hhhHHhHHHHHHHHHHhh--hhccchhhhhhhH-HHHhcccccccccccchhccccccch-hhhh-he
Confidence            34456666666 44444455555  77888  8889999888664 677888899999999988877632 2 3444 88


Q ss_pred             EEecCCCCccccchhhccCcccceeecCCcccCCC---cC-ccCCCCcccceeec
Q 047903          193 TLDMPFSYIDHTADEFWKMNNLRHLNFGSITLPAH---PR-KYCRSLENLNFISA  243 (430)
Q Consensus       193 ~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~---lp-~~l~~L~~L~~~~~  243 (430)
                      .|.+++|.++.+-. +.+|.+|+.||+++|-+.+.   .| +.+..|..|.+-++
T Consensus       236 ~L~lrnN~l~tL~g-ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN  289 (1096)
T KOG1859|consen  236 LLNLRNNALTTLRG-IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN  289 (1096)
T ss_pred             eeeecccHHHhhhh-HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence            89999888887754 88888999999998887763   22 55555555555443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.68  E-value=9e-06  Score=64.25  Aligned_cols=87  Identities=16%  Similarity=0.186  Sum_probs=76.6

Q ss_pred             CCeeEEEEeecCCCccccccc---cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEE
Q 047903          118 KNVKRINVFEKQSDFAHLDDY---DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTL  194 (430)
Q Consensus       118 ~~~r~L~l~~~~~~~~~~~~~---~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L  194 (430)
                      ..+..++++ ++....+++.+   ++-++  .+++++|.++.+|..+..++.||.|+++.|.+...|.-+ ..|.+|-.|
T Consensus        53 ~el~~i~ls-~N~fk~fp~kft~kf~t~t--~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi-~~L~~l~~L  128 (177)
T KOG4579|consen   53 YELTKISLS-DNGFKKFPKKFTIKFPTAT--TLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVI-APLIKLDML  128 (177)
T ss_pred             ceEEEEecc-cchhhhCCHHHhhccchhh--hhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHH-HHHHhHHHh
Confidence            346778888 88777788877   66778  999999999999988999999999999999999999988 779999999


Q ss_pred             ecCCCCccccchhh
Q 047903          195 DMPFSYIDHTADEF  208 (430)
Q Consensus       195 ~L~~~~l~~lp~~i  208 (430)
                      +..+|.+..+|..+
T Consensus       129 ds~~na~~eid~dl  142 (177)
T KOG4579|consen  129 DSPENARAEIDVDL  142 (177)
T ss_pred             cCCCCccccCcHHH
Confidence            99999888888764

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.66  E-value=5.3e-05  Score=63.99  Aligned_cols=104  Identities=23%  Similarity=0.160  Sum_probs=76.1

Q ss_pred             EEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccch--hhccCcccceeecCCcc
Q 047903          146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTAD--EFWKMNNLRHLNFGSIT  223 (430)
Q Consensus       146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~  223 (430)
                      .+||++|.+..+ +.|..++.|.+|.+.+|+|+.+-+.+-.-+++|++|.|.+|+|.++.+  .+..+++|++|.+-+|.
T Consensus        46 ~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np  124 (233)
T KOG1644|consen   46 AIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP  124 (233)
T ss_pred             eecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc
Confidence            889999988765 346788899999999999998866663557789999999998887654  26778888888887777


Q ss_pred             cCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903          224 LPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL  269 (430)
Q Consensus       224 ~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  269 (430)
                      +.. -+          .       -..-. +..+++|+.|+.....
T Consensus       125 v~~-k~----------~-------YR~yv-l~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  125 VEH-KK----------N-------YRLYV-LYKLPSLRTLDFQKVT  151 (233)
T ss_pred             hhc-cc----------C-------ceeEE-EEecCcceEeehhhhh
Confidence            765 11          0       01111 5666777777776665

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.58  E-value=6.5e-06  Score=76.66  Aligned_cols=251  Identities=16%  Similarity=0.097  Sum_probs=144.4

Q ss_pred             cceEEEEEecCCccc---ccccccccccCCceeecCCCC-Cccc-ChHhhhcCCCccEEecCCC-Cccccch--hhccCc
Q 047903          141 HMHSLVLDLGSLVLI---HYLSGIENLFLLRYLKLNIPS-LKSL-PSPLLSNLLNLYTLDMPFS-YIDHTAD--EFWKMN  212 (430)
Q Consensus       141 ~L~~L~L~l~~~~l~---~lp~~~~~l~~L~~L~L~~~~-i~~l-p~~i~~~L~~L~~L~L~~~-~l~~lp~--~i~~L~  212 (430)
                      .|+  .|.++|+.-.   .+-..-..++++..|.+.+|. +++- -.++-..+++|++|++..| .++...-  -...++
T Consensus       139 ~lk--~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~  216 (483)
T KOG4341|consen  139 FLK--ELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR  216 (483)
T ss_pred             ccc--cccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence            455  6777777632   222333467788888888776 3321 1223256888888888887 6664332  245678


Q ss_pred             ccceeecCCcccCCC--cC---ccCCCCcccceeecCCCC-cchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCC
Q 047903          213 NLRHLNFGSITLPAH--PR---KYCRSLENLNFISALHPC-CCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCL  286 (430)
Q Consensus       213 ~L~~L~l~~~~~~~~--lp---~~l~~L~~L~~~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L  286 (430)
                      +|++++++.|.-...  +.   ...++++.+...+|.... ..+..+-+....+.++++..+.......+...-.....|
T Consensus       217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l  296 (483)
T KOG4341|consen  217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL  296 (483)
T ss_pred             hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence            888888877653321  21   334445555444444211 111110133344455555555422222333333445667


Q ss_pred             CEEEEecCCCCCCceEEEEE--cccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCce--
Q 047903          287 ESLKLVSESKMPTLSKIVLV--EYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEW--  362 (430)
Q Consensus       287 ~~L~l~~~~~~~~L~~L~l~--~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--  362 (430)
                      +.|..++   +..+....+|  ..+- ++|+.|.++.|+.-        .+..+..-....+.|+.+++..|.....-  
T Consensus       297 q~l~~s~---~t~~~d~~l~aLg~~~-~~L~~l~l~~c~~f--------sd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL  364 (483)
T KOG4341|consen  297 QVLCYSS---CTDITDEVLWALGQHC-HNLQVLELSGCQQF--------SDRGFTMLGRNCPHLERLDLEECGLITDGTL  364 (483)
T ss_pred             hhhcccC---CCCCchHHHHHHhcCC-CceEEEeccccchh--------hhhhhhhhhcCChhhhhhcccccceehhhhH
Confidence            7777766   4444433321  2244 78899999888631        22223333456788999998876544322  


Q ss_pred             EEcCCccccccEeEEeecCCCCcC-----CCCCCCCCCCCEEEEecCh
Q 047903          363 TMGIGAMPKLECLIINPCAYLKKM-----PEQPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       363 ~~~~~~~~~L~~L~l~~c~~l~~l-----p~~l~~l~~L~~L~l~~~~  405 (430)
                      .....++|.|+.|.++.|...++.     ..+-..+..|+.+.+++||
T Consensus       365 ~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p  412 (483)
T KOG4341|consen  365 ASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCP  412 (483)
T ss_pred             hhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCC
Confidence            222346899999999999876654     3444567789999999999

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.46  E-value=5.1e-05  Score=66.97  Aligned_cols=233  Identities=18%  Similarity=0.091  Sum_probs=126.6

Q ss_pred             cCcceEEEEEecCCccc-----ccccccccccCCceeecCCCC---Cc-ccCh-------HhhhcCCCccEEecCCCCcc
Q 047903          139 DSHMHSLVLDLGSLVLI-----HYLSGIENLFLLRYLKLNIPS---LK-SLPS-------PLLSNLLNLYTLDMPFSYID  202 (430)
Q Consensus       139 ~~~L~~L~L~l~~~~l~-----~lp~~~~~l~~L~~L~L~~~~---i~-~lp~-------~i~~~L~~L~~L~L~~~~l~  202 (430)
                      +..+.  .++||||.+.     .+...+.+-.+|+..+++.--   .+ ++|+       .+ -+|++|++.+||.|.+.
T Consensus        29 ~d~~~--evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aL-lkcp~l~~v~LSDNAfg  105 (388)
T COG5238          29 MDELV--EVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKAL-LKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             hccee--EEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHH-hcCCcceeeeccccccC
Confidence            44455  8999999976     334556677888888887632   11 3333       34 78999999999999544


Q ss_pred             -ccchh----hccCcccceeecCCcccCCCcC--------------ccCCCCcccceeecCC----CCcc-hh-hhcCCC
Q 047903          203 -HTADE----FWKMNNLRHLNFGSITLPAHPR--------------KYCRSLENLNFISALH----PCCC-TE-DILGRL  257 (430)
Q Consensus       203 -~lp~~----i~~L~~L~~L~l~~~~~~~~lp--------------~~l~~L~~L~~~~~~~----~~~~-~~-~~l~~l  257 (430)
                       ..|+.    |+.-+.|.||.+++|-+.. +-              .+..+-..|..+.|..    ++.. .. ..+..-
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp-~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh  184 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNGLGP-IAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH  184 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCCCCc-cchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh
Confidence             44443    6778889999999887654 22              1122222333344432    1111 00 002233


Q ss_pred             CCCceEEEEccccc---cHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEE--EcccccCCcceEEEEccccCCcccccc
Q 047903          258 PNLRNLRIWGDLSY---YQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVL--VEYQFPPRLTHLSFSNTELMEDPKSRA  332 (430)
Q Consensus       258 ~~L~~L~l~~~~~~---~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l--~~~~lp~~L~~L~L~~~~l~~~~~~~~  332 (430)
                      .+|+++.+..|...   ...-....+..+.+|+.|+|.++- ++...+..+  ....- +.|+.|.+.+|-+........
T Consensus       185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La~al~~W-~~lrEL~lnDClls~~G~~~v  262 (388)
T COG5238         185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLADALCEW-NLLRELRLNDCLLSNEGVKSV  262 (388)
T ss_pred             cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHHHHhccc-chhhhccccchhhccccHHHH
Confidence            56777777776511   122223444556677777776511 111111111  12233 667888888887654321000


Q ss_pred             cCCCeEEEcCCCCCcccEEEEeeCCCCCceE-------EcCCccccccEeEEeecC
Q 047903          333 SSSRKLTCGSDGFPNLKVLHLKSMLWLEEWT-------MGIGAMPKLECLIINPCA  381 (430)
Q Consensus       333 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-------~~~~~~~~L~~L~l~~c~  381 (430)
                      +.    .+....+|+|..|...+...-..+.       +..+++|-|..|.+.++.
T Consensus       263 ~~----~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr  314 (388)
T COG5238         263 LR----RFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR  314 (388)
T ss_pred             HH----HhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence            00    1112346777777776522111111       223578888888888754

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.42  E-value=9.4e-05  Score=76.22  Aligned_cols=104  Identities=15%  Similarity=0.152  Sum_probs=67.4

Q ss_pred             CCeeEEEEeecCCC--ccccccc---cCcceEEEEEecCCccc--ccccccccccCCceeecCCCCCcccChHhhhcCCC
Q 047903          118 KNVKRINVFEKQSD--FAHLDDY---DSHMHSLVLDLGSLVLI--HYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLN  190 (430)
Q Consensus       118 ~~~r~L~l~~~~~~--~~~~~~~---~~~L~~L~L~l~~~~l~--~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~  190 (430)
                      .++++|.+. ....  ...+..+   +|.|+  .|.++|-.+.  ++..-..++++|+.||+++++++.+ .++ ++|++
T Consensus       122 ~nL~~LdI~-G~~~~s~~W~~kig~~LPsL~--sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GI-S~Lkn  196 (699)
T KOG3665|consen  122 QNLQHLDIS-GSELFSNGWPKKIGTMLPSLR--SLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGI-SRLKN  196 (699)
T ss_pred             HhhhhcCcc-ccchhhccHHHHHhhhCcccc--eEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHH-hcccc
Confidence            456666665 3221  1122222   78888  6666666543  3334456788888888888888877 677 88888


Q ss_pred             ccEEecCCCCccccc--hhhccCcccceeecCCcccCC
Q 047903          191 LYTLDMPFSYIDHTA--DEFWKMNNLRHLNFGSITLPA  226 (430)
Q Consensus       191 L~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~  226 (430)
                      ||+|.+++=.+..-.  ..+.+|++|++||+|......
T Consensus       197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~  234 (699)
T KOG3665|consen  197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNND  234 (699)
T ss_pred             HHHHhccCCCCCchhhHHHHhcccCCCeeecccccccc
Confidence            888888765554322  247778888888888766554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.31  E-value=0.00061  Score=65.07  Aligned_cols=78  Identities=13%  Similarity=0.097  Sum_probs=50.9

Q ss_pred             CCeeEEEEeecCCCccccccccCcceEEEEEecCCc-ccccccccccccCCceeecCCC-CCcccChHhhhcCCCccEEe
Q 047903          118 KNVKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLV-LIHYLSGIENLFLLRYLKLNIP-SLKSLPSPLLSNLLNLYTLD  195 (430)
Q Consensus       118 ~~~r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~-l~~lp~~~~~l~~L~~L~L~~~-~i~~lp~~i~~~L~~L~~L~  195 (430)
                      .++++|.+. ++....+| .+.++|+  .|.+++|. ++.+|..+.  .+|++|++++| .+..+|++       |+.|+
T Consensus        52 ~~l~~L~Is-~c~L~sLP-~LP~sLt--sL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s-------Le~L~  118 (426)
T PRK15386         52 RASGRLYIK-DCDIESLP-VLPNELT--EITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES-------VRSLE  118 (426)
T ss_pred             cCCCEEEeC-CCCCcccC-CCCCCCc--EEEccCCCCcccCCchhh--hhhhheEccCcccccccccc-------cceEE
Confidence            446678887 66666565 3456688  77777755 667776553  47888888887 57777754       45666


Q ss_pred             cCCCC---ccccchhh
Q 047903          196 MPFSY---IDHTADEF  208 (430)
Q Consensus       196 L~~~~---l~~lp~~i  208 (430)
                      ++.+.   +..+|.++
T Consensus       119 L~~n~~~~L~~LPssL  134 (426)
T PRK15386        119 IKGSATDSIKNVPNGL  134 (426)
T ss_pred             eCCCCCcccccCcchH
Confidence            66553   45566543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.18  E-value=0.00049  Score=58.28  Aligned_cols=106  Identities=20%  Similarity=0.196  Sum_probs=63.0

Q ss_pred             cCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhc-cCcccceeecCCcccCCCcCccCCCCcccceeec
Q 047903          165 FLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFW-KMNNLRHLNFGSITLPAHPRKYCRSLENLNFISA  243 (430)
Q Consensus       165 ~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~-~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~  243 (430)
                      .+.-.++|++|.+..++. + ..++.|.+|.+.+|.|+.+...+. -+++|+.|.+.+|.+.. +               
T Consensus        42 d~~d~iDLtdNdl~~l~~-l-p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~-l---------------  103 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLDN-L-PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQE-L---------------  103 (233)
T ss_pred             cccceecccccchhhccc-C-CCccccceEEecCCcceeeccchhhhccccceEEecCcchhh-h---------------
Confidence            345567777777666532 3 667777777777777777755543 34557777777776655 1               


Q ss_pred             CCCCcchhhhcCCCCCCceEEEEccccc-cHHHHHHHhcCCCCCCEEEEec
Q 047903          244 LHPCCCTEDILGRLPNLRNLRIWGDLSY-YQSLLSQSLCTLTCLESLKLVS  293 (430)
Q Consensus       244 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~l~~L~~L~l~~  293 (430)
                          ..+.. +..+++|+.|.+.++.-. ....-.-.+..+++|+.|++..
T Consensus       104 ----~dl~p-La~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  104 ----GDLDP-LASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             ----hhcch-hccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence                22333 677888888888888500 0000111244556666666654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.10  E-value=8.8e-05  Score=65.74  Aligned_cols=100  Identities=20%  Similarity=0.103  Sum_probs=47.1

Q ss_pred             ccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceeecCCcccCCCcC-----ccCCCCccc
Q 047903          164 LFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPR-----KYCRSLENL  238 (430)
Q Consensus       164 l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp-----~~l~~L~~L  238 (430)
                      +.+.+.|+..+|++..+ .-+ .+++.|++|.|+-|+|+.+.. +..+++|++|+|..|.+.. +.     .++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI-sic-~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI-SIC-EKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH-HHH-HhcccceeEEeeccccccchh-HHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhH
Confidence            33444455555555544 112 445555555555555555533 4455555555555555444 22     333344443


Q ss_pred             ceeecCC---CCc--chhhhcCCCCCCceEEEEcc
Q 047903          239 NFISALH---PCC--CTEDILGRLPNLRNLRIWGD  268 (430)
Q Consensus       239 ~~~~~~~---~~~--~~~~~l~~l~~L~~L~l~~~  268 (430)
                      .+..+.-   .+.  .... +.-+++|++|+=...
T Consensus        94 WL~ENPCc~~ag~nYR~~V-LR~LPnLkKLDnv~V  127 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKV-LRVLPNLKKLDNVPV  127 (388)
T ss_pred             hhccCCcccccchhHHHHH-HHHcccchhccCccc
Confidence            3333221   111  1222 667788888754443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.88  E-value=0.00052  Score=60.50  Aligned_cols=59  Identities=20%  Similarity=0.174  Sum_probs=25.7

Q ss_pred             cCCceeecCCCCCcccChHhhhcCCCccEEecCCC--Ccc-ccchhhccCcccceeecCCcccC
Q 047903          165 FLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFS--YID-HTADEFWKMNNLRHLNFGSITLP  225 (430)
Q Consensus       165 ~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~--~l~-~lp~~i~~L~~L~~L~l~~~~~~  225 (430)
                      ..|..|++.+..++++- .+ -.|++|++|.++.|  .+. .++.-..++++|+++++++|++.
T Consensus        43 ~~le~ls~~n~gltt~~-~~-P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   43 VELELLSVINVGLTTLT-NF-PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             cchhhhhhhccceeecc-cC-CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            33444444444433331 12 34455555555555  222 22222334455555555555544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.86  E-value=0.00026  Score=70.79  Aligned_cols=130  Identities=25%  Similarity=0.210  Sum_probs=85.3

Q ss_pred             cccCCceeecCCCC-Ccc--cChHhhhcCCCccEEecCCC--Cccccc----hhhccCcccceeecCCcc-cCCC-cC--
Q 047903          163 NLFLLRYLKLNIPS-LKS--LPSPLLSNLLNLYTLDMPFS--YIDHTA----DEFWKMNNLRHLNFGSIT-LPAH-PR--  229 (430)
Q Consensus       163 ~l~~L~~L~L~~~~-i~~--lp~~i~~~L~~L~~L~L~~~--~l~~lp----~~i~~L~~L~~L~l~~~~-~~~~-lp--  229 (430)
                      .++.|+.|.+.++. +..  +-+.. ..+++|+.|+++++  .+...+    .....+++|++|+++++. ++.. +.  
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALA-LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHH-hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence            47888888888874 544  33444 88999999999873  333222    234567889999999887 4431 22  


Q ss_pred             -ccCCCCcccceeecCC-CCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEec
Q 047903          230 -KYCRSLENLNFISALH-PCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVS  293 (430)
Q Consensus       230 -~~l~~L~~L~~~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~  293 (430)
                       ..+++|+.|....+.. +...+..+...+++|++|+++++.......+.......++|+.|.+..
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~  330 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS  330 (482)
T ss_pred             HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence             4477888888555663 445555536678889999999887433444444455566666665544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.77  E-value=0.00018  Score=63.75  Aligned_cols=96  Identities=21%  Similarity=0.201  Sum_probs=66.1

Q ss_pred             EEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchh--hccCcccceeecCCcc
Q 047903          146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADE--FWKMNNLRHLNFGSIT  223 (430)
Q Consensus       146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~--i~~L~~L~~L~l~~~~  223 (430)
                      .|+.-||.++.+ ....+|+.|++|.|+-|+|+++ ..+ ..|++|+.|.|+.|.|..+.+-  +.++++|+.|-|..|.
T Consensus        23 KLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl-~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENP   99 (388)
T KOG2123|consen   23 KLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APL-QRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENP   99 (388)
T ss_pred             hhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhH-HHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCC
Confidence            566667766654 2234678888888888888877 335 7888888888888877776553  6788888888777766


Q ss_pred             cCCCcC--------ccCCCCcccceeecC
Q 047903          224 LPAHPR--------KYCRSLENLNFISAL  244 (430)
Q Consensus       224 ~~~~lp--------~~l~~L~~L~~~~~~  244 (430)
                      -.+.-+        ..+++|++|+-..+.
T Consensus       100 Cc~~ag~nYR~~VLR~LPnLkKLDnv~Vt  128 (388)
T KOG2123|consen  100 CCGEAGQNYRRKVLRVLPNLKKLDNVPVT  128 (388)
T ss_pred             cccccchhHHHHHHHHcccchhccCcccc
Confidence            554322        457777777665543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.58  E-value=0.0005  Score=68.76  Aligned_cols=107  Identities=21%  Similarity=0.166  Sum_probs=77.4

Q ss_pred             hcCCCccEEecCCC-Cccc--cchhhccCcccceeecCCc-ccCCCcC-------ccCCCCcccceeecC-CCCcchhhh
Q 047903          186 SNLLNLYTLDMPFS-YIDH--TADEFWKMNNLRHLNFGSI-TLPAHPR-------KYCRSLENLNFISAL-HPCCCTEDI  253 (430)
Q Consensus       186 ~~L~~L~~L~L~~~-~l~~--lp~~i~~L~~L~~L~l~~~-~~~~~lp-------~~l~~L~~L~~~~~~-~~~~~~~~~  253 (430)
                      ..+++|+.|.+.++ .+..  +-......++|+.|+++++ ......+       ..+.+|+.|.+..+. .+...+.. 
T Consensus       185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~-  263 (482)
T KOG1947|consen  185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA-  263 (482)
T ss_pred             hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH-
Confidence            56899999999999 7775  4455788999999999973 2221111       556788888888777 34455555 


Q ss_pred             cC-CCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEec
Q 047903          254 LG-RLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVS  293 (430)
Q Consensus       254 l~-~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~  293 (430)
                      +. .+++|+.|.+..+.......+......+++|++|++++
T Consensus       264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~  304 (482)
T KOG1947|consen  264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSG  304 (482)
T ss_pred             HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeec
Confidence            44 37899999977775334556666677888999999997

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.48  E-value=0.002  Score=56.90  Aligned_cols=79  Identities=18%  Similarity=0.205  Sum_probs=51.8

Q ss_pred             EEEecCCcccccccccccccCCceeecCCC--CCc-ccChHhhhcCCCccEEecCCCCccccc--hhhccCcccceeecC
Q 047903          146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIP--SLK-SLPSPLLSNLLNLYTLDMPFSYIDHTA--DEFWKMNNLRHLNFG  220 (430)
Q Consensus       146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~--~i~-~lp~~i~~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~  220 (430)
                      .+++.++.++.+ ..+-.|++|++|.++.|  .+. .++..+ .++++|++|++++|++..+.  +.+..+.+|..|++.
T Consensus        47 ~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~  124 (260)
T KOG2739|consen   47 LLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLF  124 (260)
T ss_pred             hhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccchhhhhcchhhhhcc
Confidence            444444444432 23456778888988888  444 555555 66789999999988666432  126677778888887


Q ss_pred             CcccCC
Q 047903          221 SITLPA  226 (430)
Q Consensus       221 ~~~~~~  226 (430)
                      .|...+
T Consensus       125 n~~~~~  130 (260)
T KOG2739|consen  125 NCSVTN  130 (260)
T ss_pred             cCCccc
Confidence            777665

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.39  E-value=0.0014  Score=34.67  Aligned_cols=17  Identities=18%  Similarity=0.171  Sum_probs=7.7

Q ss_pred             ccEEecCCCCccccchh
Q 047903          191 LYTLDMPFSYIDHTADE  207 (430)
Q Consensus       191 L~~L~L~~~~l~~lp~~  207 (430)
                      |++|++++|+++.+|.+
T Consensus         2 L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             ESEEEETSSEESEEGTT
T ss_pred             ccEEECCCCcCEeCChh
Confidence            44444444444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.15  E-value=0.0015  Score=34.55  Aligned_cols=21  Identities=48%  Similarity=0.657  Sum_probs=14.3

Q ss_pred             CCceeecCCCCCcccChHhhhc
Q 047903          166 LLRYLKLNIPSLKSLPSPLLSN  187 (430)
Q Consensus       166 ~L~~L~L~~~~i~~lp~~i~~~  187 (430)
                      +|++|++++|+++.+|+++ ++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~-~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSF-SN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTT-TT
T ss_pred             CccEEECCCCcCEeCChhh-cC
Confidence            4677777777777777664 54

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.76  E-value=0.021  Score=50.98  Aligned_cols=40  Identities=23%  Similarity=0.229  Sum_probs=26.8

Q ss_pred             cCCCCCCceEEEEccc--cccHHHHHHHhcCCCCCCEEEEec
Q 047903          254 LGRLPNLRNLRIWGDL--SYYQSLLSQSLCTLTCLESLKLVS  293 (430)
Q Consensus       254 l~~l~~L~~L~l~~~~--~~~~~~~~~~l~~l~~L~~L~l~~  293 (430)
                      +..+.+|+.|++.+|.  ...+..+...+...+.|+.|.+.+
T Consensus       210 l~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnD  251 (388)
T COG5238         210 LFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLND  251 (388)
T ss_pred             HHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccc
Confidence            4566788888888886  122334455667777788887765

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.43  E-value=0.00062  Score=58.92  Aligned_cols=85  Identities=16%  Similarity=0.040  Sum_probs=73.2

Q ss_pred             cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceee
Q 047903          139 DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLN  218 (430)
Q Consensus       139 ~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~  218 (430)
                      +...+  +||++.|++..+-..|+-++.|..|+++.|++..+|.++ +++..++.+++..|+....|.++++++++++++
T Consensus        41 ~kr~t--vld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~-~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVT--VLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDA-KQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceee--eehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhH-HHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence            44555  899999988877788888889999999999999999988 999999999999889999999999999999998


Q ss_pred             cCCcccCC
Q 047903          219 FGSITLPA  226 (430)
Q Consensus       219 l~~~~~~~  226 (430)
                      +.++.+..
T Consensus       118 ~k~~~~~~  125 (326)
T KOG0473|consen  118 QKKTEFFR  125 (326)
T ss_pred             hccCcchH
Confidence            88877643

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.22  E-value=0.012  Score=28.78  Aligned_cols=15  Identities=33%  Similarity=0.394  Sum_probs=5.2

Q ss_pred             CccEEecCCCCcccc
Q 047903          190 NLYTLDMPFSYIDHT  204 (430)
Q Consensus       190 ~L~~L~L~~~~l~~l  204 (430)
                      +|+.|++++|+++.+
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            344444444444433

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.11  E-value=0.037  Score=44.21  Aligned_cols=65  Identities=18%  Similarity=0.273  Sum_probs=25.7

Q ss_pred             ccccc-cccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchh-hccCcccceeecC
Q 047903          154 LIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADE-FWKMNNLRHLNFG  220 (430)
Q Consensus       154 l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~  220 (430)
                      +..++ ..|..+.+|+.+.+..+ +..++...|.++++|+.+.+.. .+..++.. +..+++|+.+++.
T Consensus        23 ~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~   89 (129)
T PF13306_consen   23 IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP   89 (129)
T ss_dssp             --EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred             eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence            44443 34445555555555443 5555444445555555555543 33333332 3445555555443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.98  E-value=0.083  Score=42.15  Aligned_cols=104  Identities=20%  Similarity=0.212  Sum_probs=55.7

Q ss_pred             CCCCCCCCCCeeEEEEeecCCCccccccc---cCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhh
Q 047903          110 GDPKGKSRKNVKRINVFEKQSDFAHLDDY---DSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLL  185 (430)
Q Consensus       110 ~~~~~~~~~~~r~L~l~~~~~~~~~~~~~---~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~  185 (430)
                      +...+....+++.+.+. +. ...+.+..   +.+++  .+.+.++ +..++ ..|.++..|+.+.+.. .+..++...|
T Consensus         4 ~~~~F~~~~~l~~i~~~-~~-~~~I~~~~F~~~~~l~--~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F   77 (129)
T PF13306_consen    4 GNNAFYNCSNLESITFP-NT-IKKIGENAFSNCTSLK--SINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAF   77 (129)
T ss_dssp             -TTTTTT-TT--EEEET-ST---EE-TTTTTT-TT-S--EEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTT
T ss_pred             CHHHHhCCCCCCEEEEC-CC-eeEeChhhcccccccc--ccccccc-ccccceeeeecccccccccccc-cccccccccc
Confidence            34444455567777776 43 33344443   55777  7777764 66666 4677787888888865 6777776676


Q ss_pred             hcCCCccEEecCCCCccccchh-hccCcccceeecCC
Q 047903          186 SNLLNLYTLDMPFSYIDHTADE-FWKMNNLRHLNFGS  221 (430)
Q Consensus       186 ~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~  221 (430)
                      ..+.+|+.+++..+ +..++.. +.+. +|+.+.+..
T Consensus        78 ~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   78 SNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            88888988888664 6666554 5665 777775554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.84  E-value=0.023  Score=31.29  Aligned_cols=20  Identities=40%  Similarity=0.345  Sum_probs=11.3

Q ss_pred             cCCceeecCCCCCcccChHh
Q 047903          165 FLLRYLKLNIPSLKSLPSPL  184 (430)
Q Consensus       165 ~~L~~L~L~~~~i~~lp~~i  184 (430)
                      ++|++|+|++|+++.+|..+
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHH
Confidence            45555666666555555554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.84  E-value=0.023  Score=31.29  Aligned_cols=20  Identities=40%  Similarity=0.345  Sum_probs=11.3

Q ss_pred             cCCceeecCCCCCcccChHh
Q 047903          165 FLLRYLKLNIPSLKSLPSPL  184 (430)
Q Consensus       165 ~~L~~L~L~~~~i~~lp~~i  184 (430)
                      ++|++|+|++|+++.+|..+
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHH
Confidence            45555666666555555554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.72  E-value=0.017  Score=28.24  Aligned_cols=17  Identities=47%  Similarity=0.460  Sum_probs=9.7

Q ss_pred             cCCceeecCCCCCcccC
Q 047903          165 FLLRYLKLNIPSLKSLP  181 (430)
Q Consensus       165 ~~L~~L~L~~~~i~~lp  181 (430)
                      ++|+.|++++|+++++|
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            36788888888877765

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.66  E-value=0.0031  Score=54.70  Aligned_cols=76  Identities=17%  Similarity=0.080  Sum_probs=66.4

Q ss_pred             ccccc-cccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceeecCCcccCCCcCcc
Q 047903          154 LIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPRKY  231 (430)
Q Consensus       154 l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~  231 (430)
                      ++.+| ..+..+...+.||++.|++..+...+ +.+..|..|+++.|.+..+|.+++++..++++++..|.... .|.+
T Consensus        30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~-s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~-~p~s  106 (326)
T KOG0473|consen   30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNF-SILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQ-QPKS  106 (326)
T ss_pred             hcccchhhhhccceeeeehhhhhHHHhhccch-HHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhh-CCcc
Confidence            44666 56778889999999999988887777 89999999999999999999999999999999999998887 7733

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.99  E-value=0.0077  Score=51.23  Aligned_cols=83  Identities=16%  Similarity=0.293  Sum_probs=60.7

Q ss_pred             CcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEc--CCccccccEeEEeecCCCCcCC-CC
Q 047903          313 RLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMG--IGAMPKLECLIINPCAYLKKMP-EQ  389 (430)
Q Consensus       313 ~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~~L~~L~l~~c~~l~~lp-~~  389 (430)
                      .++.++-+++.+....          ......+++++.|.+.+|.++..+...  .+..++|+.|++++|+.+++-. ..
T Consensus       102 ~IeaVDAsds~I~~eG----------le~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~  171 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEG----------LEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC  171 (221)
T ss_pred             eEEEEecCCchHHHHH----------HHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH
Confidence            4667777777654322          112356788889999999988877533  3468999999999999988743 35


Q ss_pred             CCCCCCCCEEEEecCh
Q 047903          390 PWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       390 l~~l~~L~~L~l~~~~  405 (430)
                      +..+++|+.|.+.+-+
T Consensus       172 L~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  172 LLKLKNLRRLHLYDLP  187 (221)
T ss_pred             HHHhhhhHHHHhcCch
Confidence            6778999999998876

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.97  E-value=0.096  Score=28.70  Aligned_cols=21  Identities=24%  Similarity=0.222  Sum_probs=16.7

Q ss_pred             CCCccEEecCCCCccccchhh
Q 047903          188 LLNLYTLDMPFSYIDHTADEF  208 (430)
Q Consensus       188 L~~L~~L~L~~~~l~~lp~~i  208 (430)
                      +++|++|+|++|.++.+|.+.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            467888888888888888763

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.97  E-value=0.096  Score=28.70  Aligned_cols=21  Identities=24%  Similarity=0.222  Sum_probs=16.7

Q ss_pred             CCCccEEecCCCCccccchhh
Q 047903          188 LLNLYTLDMPFSYIDHTADEF  208 (430)
Q Consensus       188 L~~L~~L~L~~~~l~~lp~~i  208 (430)
                      +++|++|+|++|.++.+|.+.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            467888888888888888763

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.04  E-value=0.18  Score=43.12  Aligned_cols=75  Identities=20%  Similarity=0.172  Sum_probs=51.0

Q ss_pred             EEEecCCccccc-ccccccccCCceeecCCCC-Cccc-ChHhhhcCCCccEEecCCC-Cccccch-hhccCcccceeecC
Q 047903          146 VLDLGSLVLIHY-LSGIENLFLLRYLKLNIPS-LKSL-PSPLLSNLLNLYTLDMPFS-YIDHTAD-EFWKMNNLRHLNFG  220 (430)
Q Consensus       146 ~L~l~~~~l~~l-p~~~~~l~~L~~L~L~~~~-i~~l-p~~i~~~L~~L~~L~L~~~-~l~~lp~-~i~~L~~L~~L~l~  220 (430)
                      .+|-+++.+... -+.+.+++.++.|.+.+|. +..- -+.+-+-.++|+.|++++| .|++--- .+..+++|+.|.+.
T Consensus       105 aVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~  184 (221)
T KOG3864|consen  105 AVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY  184 (221)
T ss_pred             EEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence            778888877633 3667788888888888876 2211 1222134688999999999 8886532 37788888888554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	430
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	6e-11
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	8e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-04

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 63.1 bits (153), Expect = 6e-11
 Identities = 11/79 (13%), Positives = 25/79 (31%), Gaps = 5/79 (6%)

Query: 12  YCRLPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDN--SEATAEKDLELLINRG 69
              L    +    +  V P  ++I  +    +   +    +    +      L+ L  RG
Sbjct: 382 VEVLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRG 441

Query: 70  FVDTRKRGAGGTINTCSVH 88
            + + KR     + T  + 
Sbjct: 442 ALLSGKR---MPVLTFKID 457

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 62.9 bits (153), Expect = 8e-11
 Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 10/77 (12%)

Query: 12  YCRLPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKDLELLINRGFV 71
              L   +K  +  LS+    +++ T+ L  LW  E           E  L+  +N+  +
Sbjct: 372 VEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEE-------VEDILQEFVNKSLL 424

Query: 72  DTRKRGAGGTINTCSVH 88
                   G      +H
Sbjct: 425 ---FCDRNGKSFRYYLH 438

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.9 bits (144), Expect = 1e-09
 Identities = 48/233 (20%), Positives = 81/233 (34%), Gaps = 52/233 (22%)

Query: 16  PFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKDLELLINRGFVDTRK 75
           P   +  F  LSVFP    I T  L  +W       D  ++     +  L     V+  K
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIW------FDVIKSDVMVVVNKLHKYSLVE--K 419

Query: 76  RGAGGTINTCSVHGRCRPVLLSVAFEAKFVFFPFGDPKGKSRKNVKRINVFEK--QSDFA 133
           +    TI   S+      + L +  + +       +     R  V   N+ +     D  
Sbjct: 420 QPKESTI---SIPS----IYLELKVKLE-------NEYALHRSIVDHYNIPKTFDSDDLI 465

Query: 134 --HLDDYD-SHM--HSLVLDLGSLVLIHYLSGIENLFL-LRYL--KL-NIPSLKSLPSPL 184
             +LD Y  SH+  H     L ++     ++    +FL  R+L  K+ +  +  +    +
Sbjct: 466 PPYLDQYFYSHIGHH-----LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520

Query: 185 LSNL--LNLYTLDMPFSYI-DHTADEFWKMNNLRHLNFGSITLPAHPRKYCRS 234
           L+ L  L  Y       YI D+       +N +  L+F    LP        S
Sbjct: 521 LNTLQQLKFYK-----PYICDNDPKYERLVNAI--LDF----LPKIEENLICS 562

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 41/223 (18%), Positives = 69/223 (30%), Gaps = 35/223 (15%)

Query: 155 IHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNL 214
           I  ++GIE L  L  L     ++ +L    LS   NL  L    + +  T  +   +  L
Sbjct: 54  ITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKL--TNLDVTPLTKL 108

Query: 215 RHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQS 274
            +LN  +  L          L  LN          TE  +     L  L    D    + 
Sbjct: 109 TYLNCDTNKLTKLDVSQNPLLTYLN----CARNTLTEIDVSHNTQLTEL----DCHLNKK 160

Query: 275 LLSQSLCTLTCLESLKL-------VSESKMPTLSKIVL-------VEYQFPPRLTHLSFS 320
           +    +   T L +L         +  S+   L+++         ++     +LT L  S
Sbjct: 161 ITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCS 220

Query: 321 NTELMEDPKSRASSSRKLTCGS--------DGFPNLKVLHLKS 355
           + +L E   +  +      C               L  LH   
Sbjct: 221 SNKLTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQ 263

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 50.3 bits (121), Expect = 5e-07
 Identities = 42/273 (15%), Positives = 82/273 (30%), Gaps = 46/273 (16%)

Query: 147 LDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPL-LSNLLNLYTLDMPFSYIDHTA 205
                    H      N    +       +LK+    L  +       L++    +    
Sbjct: 38  HYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFP 97

Query: 206 DEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRI 265
           D+ +++++L+H+   +                   +  L         + +   L  L  
Sbjct: 98  DQAFRLSHLQHMTIDA-----------------AGLMELPDT------MQQFAGLETL-- 132

Query: 266 WGDLSYYQ-SLLSQSLCTLTCLESLKLVSESKMPTL-----SKIVLVEYQFPPRLTHLSF 319
              L+      L  S+ +L  L  L + +  ++  L     S     E+Q    L  L  
Sbjct: 133 --TLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190

Query: 320 SNTELMEDPKS--RASSSRKLTCGS----------DGFPNLKVLHLKSMLWLEEWTMGIG 367
             T +   P S     + + L   +             P L+ L L+    L  +    G
Sbjct: 191 EWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFG 250

Query: 368 AMPKLECLIINPCAYLKKMPEQPWCIKSLNKFN 400
               L+ LI+  C+ L  +P     +  L K +
Sbjct: 251 GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 47.2 bits (113), Expect = 5e-06
 Identities = 46/267 (17%), Positives = 81/267 (30%), Gaps = 64/267 (23%)

Query: 146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTA 205
            L+L S+ L  +      L  L+++ ++   L  LP   +     L TL +  + +    
Sbjct: 85  ALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELP-DTMQQFAGLETLTLARNPLRALP 143

Query: 206 DEFWKMNNLRHLN-------------FGSITLPAHPRKYCRSLENLNFISALHPCCCTE- 251
                +N LR L+               S       +    +L++L     L        
Sbjct: 144 ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG-LVNLQSLR----LEWTGIRSL 198

Query: 252 -DILGRLPNLRNLRIWGDLSYYQ-SLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQ 309
              +  L NL++L     +     S L  ++  L  LE L L   + +            
Sbjct: 199 PASIANLQNLKSL----KIRNSPLSALGPAIHHLPKLEELDLRGCTALRNY--------- 245

Query: 310 FPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAM 369
            PP     +                             LK L LK    L    + I  +
Sbjct: 246 -PPIFGGRA----------------------------PLKRLILKDCSNLLTLPLDIHRL 276

Query: 370 PKLECLIINPCAYLKKMPEQPWCIKSL 396
            +LE L +  C  L ++P     + + 
Sbjct: 277 TQLEKLDLRGCVNLSRLPSLIAQLPAN 303

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 48/254 (18%), Positives = 89/254 (35%), Gaps = 36/254 (14%)

Query: 119 NVKRINVFEKQSDFAHLDD---YDSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIP 175
             +R NV  +Q ++  +D    YD   + + +D+ +  +      I  L   + +     
Sbjct: 3   GQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDI-TLNNQKIVTFKNS 61

Query: 176 SLKSLPSPLLSNLLNLYTLDMPFSYIDH-TADEFWKMNNLRHLNFGS---ITLPAHPRKY 231
           +++ LP+ LL +   +  L++    I+      F   + ++ L  G      LP H  + 
Sbjct: 62  TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 121

Query: 232 CRSLENL----NFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQ--SLLSQSLCTLTC 285
              L  L    N +S+L        I    P L  L     +S      +   +    T 
Sbjct: 122 VPLLTVLVLERNDLSSLPR-----GIFHNTPKLTTL----SMSNNNLERIEDDTFQATTS 172

Query: 286 LESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRA------SSSRKLT 339
           L++L+L S       +++  V+    P L H + S   L       A      S +    
Sbjct: 173 LQNLQLSS-------NRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINV 225

Query: 340 CGSDGFPNLKVLHL 353
                   L +L L
Sbjct: 226 VRGPVNVELTILKL 239

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 31/202 (15%), Positives = 63/202 (31%), Gaps = 46/202 (22%)

Query: 162 ENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDM---PFSYIDHTADEFWKMNNLRHLN 218
                ++ L +   +++ LP  +  N+  L  L +     S +      F     L  L+
Sbjct: 96  AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI--FHNTPKLTTLS 153

Query: 219 FGS---ITLPAHPRKYCRSLENL----NFISALHPCCCTEDILGRLPNLRNLRIWGDLSY 271
             +     +     +   SL+NL    N ++ +            +P+L +     ++SY
Sbjct: 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL--------SLIPSLFHA----NVSY 201

Query: 272 YQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSR 331
                  +L     +E L   S + +  +   V         LT L   +  L +     
Sbjct: 202 NL---LSTLAIPIAVEELDA-SHNSINVVRGPVN------VELTILKLQHNNLTDTA--- 248

Query: 332 ASSSRKLTCGSDGFPNLKVLHL 353
                        +P L  + L
Sbjct: 249 ---------WLLNYPGLVEVDL 261

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 41/245 (16%), Positives = 76/245 (31%), Gaps = 53/245 (21%)

Query: 140 SHMHSL-VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLL--------- 189
             + ++  + L  +  I YL  +   F  + L +    LK  P+  L  L          
Sbjct: 282 HCLANVSAMSLAGV-SIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKG 340

Query: 190 ----------NLYTLDM---PFSYIDHTADEFWKMNNLRHLNFGS--ITLPAHPRKYCRS 234
                     +L  LD+     S+    +      N+LRHL+       + +        
Sbjct: 341 SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEE 400

Query: 235 LENL----NFISALHPCCCTEDILGRLPNLRNLRIWGDLSY--YQSLLSQSLCTLTCLES 288
           L++L    + +  +            L  L  L    D+SY   +         LT L +
Sbjct: 401 LQHLDFQHSTLKRVTEF----SAFLSLEKLLYL----DISYTNTKIDFDGIFLGLTSLNT 452

Query: 289 LKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNL 348
           LK+   +        +   +     LT L  S  +L +                D    L
Sbjct: 453 LKM---AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV----------FDTLHRL 499

Query: 349 KVLHL 353
           ++L++
Sbjct: 500 QLLNM 504

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 31/167 (18%), Positives = 50/167 (29%), Gaps = 25/167 (14%)

Query: 140 SHMHSL-VLDLGS--LVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDM 196
             +  L  LD     L  +   S   +L  L YL ++  + K     +   L +L TL M
Sbjct: 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM 455

Query: 197 ---PFSYIDHTADEFWKMNNLRHLNFGS---ITLPAHPRKYCRSLENL----NFISALHP 246
               F      ++ F    NL  L+        +          L+ L    N +  L  
Sbjct: 456 AGNSFKDNTL-SNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514

Query: 247 CCCTEDILGRLPNLRNLRIWGDLSYYQ--SLLSQSLCTLTCLESLKL 291
                    +L +L  L    D S+ +  +           L    L
Sbjct: 515 -----SHYNQLYSLSTL----DCSFNRIETSKGILQHFPKSLAFFNL 552

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 42/197 (21%), Positives = 66/197 (33%), Gaps = 31/197 (15%)

Query: 167 LRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDH-TADEFWKMNNLRHLNFGS---I 222
           +  L L    L+ LP+   +    L +LD+ F+ I     +   K+  L+ LN       
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86

Query: 223 TLPAHPRKYCRSLENL----NFISALHPCCCTEDILGRLPNLRNLRIWGDLSY--YQSLL 276
            L      +C +L  L    N I  +       +   +  NL  L    DLS+    S  
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIKN-----NPFVKQKNLITL----DLSHNGLSSTK 137

Query: 277 SQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSR 336
             +   L  L+ L L S +K+  L    L +      L  L  S+ ++ E          
Sbjct: 138 LGTQVQLENLQELLL-SNNKIQALKSEEL-DIFANSSLKKLELSSNQIKEFSPG------ 189

Query: 337 KLTCGSDGFPNLKVLHL 353
                      L  L L
Sbjct: 190 ----CFHAIGRLFGLFL 202

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 42/238 (17%), Positives = 72/238 (30%), Gaps = 43/238 (18%)

Query: 140 SHMHSL-VLDLGS---LVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLD 195
             + +L  L L +     L      I     L+ L+L+   +K         +  L+ L 
Sbjct: 142 VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLF 201

Query: 196 MPFSYIDHTADE----FWKMNNLRHLNFGSITLPAHPRK-----YCRSLENL----NFIS 242
           +    +  +  E         ++R+L+  +  L              +L  L    N ++
Sbjct: 202 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261

Query: 243 ALHPCCCTEDILGRLPNLRNLRIWGDLSYYQ--SLLSQSLCTLTCLESLKLVSESKMPTL 300
            +       D    LP L        L Y     L S SL  L  +  L L       ++
Sbjct: 262 VVGN-----DSFAWLPQLEYF----FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI 312

Query: 301 SKIVLVEYQFP-----PRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHL 353
           S   L +           L HL+  + ++     +             G  NLK L L
Sbjct: 313 SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN----------MFTGLINLKYLSL 360

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 29/152 (19%)

Query: 140 SHMHSL-VLDLGS---LVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLD 195
           + + SL  L L       +    S  + L  L  L L+  ++ ++   +L  L  L  LD
Sbjct: 451 ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILD 510

Query: 196 M---PFSYIDHTA------DEFWKMNNLRHLNFGS---ITLPAHPRKYCRSLENL----N 239
           +     + +   A           +++L  LN  S     +P    K    L+ +    N
Sbjct: 511 LQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN 570

Query: 240 FISALHPCCCTEDILGRLPNLRNLRIWGDLSY 271
            ++ L        +     +L++L    +L  
Sbjct: 571 NLNTLPA-----SVFNNQVSLKSL----NLQK 593

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 40.8 bits (96), Expect = 9e-04
 Identities = 42/223 (18%), Positives = 63/223 (28%), Gaps = 47/223 (21%)

Query: 139 DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLD--- 195
                   + L SL  I   S  + L  L +L +    +  + S + + L+NL  L    
Sbjct: 304 KRSFTKQSISLASLPKIDDFS-FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 362

Query: 196 --MPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDI 253
                  + +        + L  LN                    N IS +       D 
Sbjct: 363 SFTSLRTLTNETFVSLAHSPLHILNLTK-----------------NKISKIES-----DA 400

Query: 254 LGRLPNLRNLRIWGDLSY---YQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQF 310
              L +L  L    DL      Q L  Q    L  +  + L S +K   L++        
Sbjct: 401 FSWLGHLEVL----DLGLNEIGQELTGQEWRGLENIFEIYL-SYNKYLQLTRNSFALV-- 453

Query: 311 PPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHL 353
            P L  L      L     S +              NL +L L
Sbjct: 454 -PSLQRLMLRRVALKNVDSSPSPFQ--------PLRNLTILDL 487

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 30/230 (13%), Positives = 72/230 (31%), Gaps = 33/230 (14%)

Query: 135 LDDYDSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTL 194
            D  +   H + +    + L  Y   +    LL+      P +K +      +L +    
Sbjct: 373 PDMSEERKHRIRMHYKKMFL-DYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIG 431

Query: 195 DMPFSYIDHTADEFWKMNNLRHLNFGS---ITLPAHPRKYCRSLENLNFISALHPCCCTE 251
           ++  + I   +    ++  L+ + F +               + +              E
Sbjct: 432 NL-TNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE------E 484

Query: 252 DILGRLPNLRNLRIWGDLSYYQSL--LSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQ 309
                L +L ++    +L    ++  L   L  L  L+SL + + ++  + +++     +
Sbjct: 485 LSWSNLKDLTDV----ELYNCPNMTQLPDFLYDLPELQSLNI-ACNRGISAAQLKADWTR 539

Query: 310 FP------PRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHL 353
                   P++         L E P S +    K+         L +L  
Sbjct: 540 LADDEDTGPKIQIFYMGYNNLEEFPASASLQ--KMV-------KLGLLDC 580

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 43/247 (17%), Positives = 80/247 (32%), Gaps = 41/247 (16%)

Query: 138 YDSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMP 197
           YD   + + +D+ +  +      I  L   + +     +++ LP+ LL +   +  L++ 
Sbjct: 19  YDCVFYDVHIDMQTQDVYFGFEDI-TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 77

Query: 198 FSYIDH-TADEFWKMNNLRHLNFGS--IT-LPAHPRKYCRSLENL----NFISALHPCCC 249
              I+      F   + ++ L  G   I  LP H  +    L  L    N +S+L     
Sbjct: 78  DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR--- 134

Query: 250 TEDILGRLPNLRNLRIWGDLSYYQ--SLLSQSLCTLTCLESLKL-------VSESKMPTL 300
              I    P L  L     +S      +   +    T L++L+L       V  S +P+L
Sbjct: 135 --GIFHNTPKLTTL----SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL 188

Query: 301 SKIVL-----VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGS---------DGFP 346
               +          P  +  L  S+  +             L               +P
Sbjct: 189 FHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYP 248

Query: 347 NLKVLHL 353
            L  + L
Sbjct: 249 GLVEVDL 255

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 28/220 (12%), Positives = 64/220 (29%), Gaps = 23/220 (10%)

Query: 140 SHMHSL-VLDLGS--LVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDM 196
                +  LDL    +  +++     +   L +L L    +  +          L TLD+
Sbjct: 141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDL 198

Query: 197 PFSYIDHTADEFWKMNNLRHLNFGS---ITLPAHPRKYCRSLENLNFISALHPCCCTEDI 253
             + +     EF     +  ++  +   + +    R + ++LE+ +       C    D 
Sbjct: 199 SSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALR-FSQNLEHFDLRGNGFHCGTLRDF 257

Query: 254 LGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPR 313
             +   ++ +         + L  Q+    T                     +   F  R
Sbjct: 258 FSKNQRVQTV----AKQTVKKLTGQNEEECTVPTLGHY-------GAYCCEDLPAPFADR 306

Query: 314 LTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHL 353
           L  L      L+    S    + +L C  +     + +  
Sbjct: 307 LIALKRKEHALLSGQGSE---TERLECERENQARQREIDA 343

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 38/211 (18%), Positives = 66/211 (31%), Gaps = 38/211 (18%)

Query: 154 LIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADE----FW 209
            I  L+G+E   L+     N  +L+      L  L NL   +   +Y+D+  D+    F 
Sbjct: 220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN 279

Query: 210 KMNNLRHLNFGSITLPA-HPRKYCRSLENL----NFISALHPCCCTEDILGRLPNLRNLR 264
            + N+   +  S+T+       Y    ++L                      L +L+ L 
Sbjct: 280 CLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK--------LKSLKRL- 330

Query: 265 IWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQF--PPRLTHLSFSNT 322
                +  +   + S   L  LE L L S +    LS              L +L  S  
Sbjct: 331 ---TFTSNKGGNAFSEVDLPSLEFLDL-SRNG---LSFKGCCSQSDFGTTSLKYLDLSFN 383

Query: 323 ELMEDPKSRASSSRKLTCGSDGFPNLKVLHL 353
            +             ++    G   L+ L  
Sbjct: 384 GV-----------ITMSSNFLGLEQLEHLDF 403

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 38/235 (16%), Positives = 70/235 (29%), Gaps = 35/235 (14%)

Query: 140 SHMHSL-VLDLG--SLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDM 196
             +  L  L L    +  +  L     L  L+ L     +L SL +  + +L  L  L++
Sbjct: 73  QSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131

Query: 197 PFSYIDHT--ADEFWKMNNLRHLNFGSITLPAHPRKYCRSLENL-----------NFISA 243
             + I      + F  + NL HL+  S  + +      R L  +           N ++ 
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191

Query: 244 LHPCCCTEDILGRLPNLRNLRIWGDLSYYQ---SLLSQSLCTLTCLESLKLVSESKMPTL 300
           + P         +   L  L     L       +++   +  L  LE  +L    +    
Sbjct: 192 IQPGA------FKEIRLHKL----TLRNNFDSLNVMKTCIQGLAGLEVHRL-VLGEFRNE 240

Query: 301 SKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKS 355
             +   +      L +L+     L               C      N+    L S
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC----LTNVSSFSLVS 291

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 29/163 (17%), Positives = 45/163 (27%), Gaps = 21/163 (12%)

Query: 140 SHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFS 199
             +  L               + +L  L  L  N  S K   S       +L  LD+ F+
Sbjct: 325 KSLKRLTFTSNKGGNAFSEVDLPSLEFL-DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

Query: 200 YIDHTADEFWKMNNLRHLNFG----SITLPAHPRKYCRSLENL----NFISALHPCCCTE 251
            +   +  F  +  L HL+F                 R+L  L                 
Sbjct: 384 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN----- 438

Query: 252 DILGRLPNLRNLRIWGDLSY---YQSLLSQSLCTLTCLESLKL 291
            I   L +L  L     ++     ++ L      L  L  L L
Sbjct: 439 GIFNGLSSLEVL----KMAGNSFQENFLPDIFTELRNLTFLDL 477

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 20/136 (14%)

Query: 167 LRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHT-ADEFWKMNNLRHLNFGS---I 222
            + L L+   L+ L S    +   L  LD+    I       +  +++L  L        
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 223 TLPAHPRKYCRSLENL----NFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQ---SL 275
           +L         SL+ L      +++L         +G L  L+ L    ++++       
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLEN-----FPIGHLKTLKEL----NVAHNLIQSFK 140

Query: 276 LSQSLCTLTCLESLKL 291
           L +    LT LE L L
Sbjct: 141 LPEYFSNLTNLEHLDL 156

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 29/144 (20%), Positives = 47/144 (32%), Gaps = 21/144 (14%)

Query: 140 SHMHSL-VLDLGS--LVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDM 196
             +  L  LD     L  +   S   +L  L YL ++    +   + + + L +L  L M
Sbjct: 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452

Query: 197 PFSYIDHT--ADEFWKMNNLRHLNFGS---ITLPAHPRKYCRSLENL----NFISALHPC 247
             +        D F ++ NL  L+        L         SL+ L    N   +L   
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT- 511

Query: 248 CCTEDILGRLPNLRNLRIWGDLSY 271
                    L +L+ L    D S 
Sbjct: 512 ----FPYKCLNSLQVL----DYSL 527

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.0 bits (112), Expect = 9e-06
 Identities = 35/232 (15%), Positives = 71/232 (30%), Gaps = 28/232 (12%)

Query: 140 SHMHSL-VLDLGSLVLIHYLSG--IENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDM 196
            ++ +L  L +G++     +       L  L  L++   SL++  S  L ++ +++ L +
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179

Query: 197 PFSYIDHTADE-FWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILG 255
             S      +     ++++R+L      L          L      S +        +L 
Sbjct: 180 HLSESAFLLEIFADILSSVRYLELRDTNLARFQ---FSPLPVDEVSSPMKKLAFRGSVLT 236

Query: 256 RLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLT 315
                  L++   +     +     CTL  L          +  L K+  V       + 
Sbjct: 237 DESFNELLKLLRYILELSEVEFDD-CTLNGLGDFNPSESDVVSELGKVETV------TIR 289

Query: 316 HLSFSNTELMEDPKSRASSSRKLT-------------CGS-DGFPNLKVLHL 353
            L      L  D  +  S   K+              C       +L+ L L
Sbjct: 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDL 341

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 33/177 (18%), Positives = 63/177 (35%), Gaps = 18/177 (10%)

Query: 162 ENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYID--HTADEFWKMNNLRHLNF 219
            +L  L +L L+   L SL S     L +L  L++  +          F  + NL+ L  
Sbjct: 71  YSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 130

Query: 220 GSI-TLPAHPRKYCRSLENL-------NFISALHPCCCTEDILGRLPNLRNLRIWGDLSY 271
           G++ T     R     L +L         +            L  + ++ +L +   LS 
Sbjct: 131 GNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS-----QSLKSIRDIHHLTL--HLSE 183

Query: 272 YQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDP 328
              LL      L+ +  L+L  ++ +       L   +    +  L+F  + L ++ 
Sbjct: 184 SAFLLEIFADILSSVRYLEL-RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 35/220 (15%), Positives = 71/220 (32%), Gaps = 43/220 (19%)

Query: 147 LDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDH-TA 205
            +     ++  L  +E + + R L +    L    S + S L  +  + +  S +     
Sbjct: 269 FNPSESDVVSELGKVETVTI-RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPC 327

Query: 206 DEFWKMNNLRHLNFGS---ITLPAHPRKYCRSLENL-------NFISALHPCCCTEDILG 255
                + +L  L+      +           +  +L       N + ++       +IL 
Sbjct: 328 SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTG---EILL 384

Query: 256 RLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLS--KIVLVEYQFPPR 313
            L NL +L    D+S  ++       +    E ++ ++      LS   I +V+   P  
Sbjct: 385 TLKNLTSL----DIS--RNTFHPMPDSCQWPEKMRFLN------LSSTGIRVVKTCIPQT 432

Query: 314 LTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHL 353
           L  L  SN  L                     P L+ L++
Sbjct: 433 LEVLDVSNNNLDSFSL--------------FLPRLQELYI 458

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 32/201 (15%), Positives = 64/201 (31%), Gaps = 37/201 (18%)

Query: 167 LRYLKLNIPSLKSLPSPLLSNLLNLYTLDM---PFSYIDHTADEFWKMNNLRHLNFGSIT 223
           ++ L L+   +  +    L    NL  L +     + I+  A  F+ + +L HL+     
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA--FYSLGSLEHLDLSDNH 85

Query: 224 LPAHPRKYCRSLENL-------NFISALHPCCCTEDILGRLPNLRNLRIWGDLSYY---Q 273
           L +    +   L +L       N    L        +   L NL+ L     +       
Sbjct: 86  LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT----SLFPNLTNLQTL----RIGNVETFS 137

Query: 274 SLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRAS 333
            +       LT L  L++     +       L   +    + HL+   +E     +    
Sbjct: 138 EIRRIDFAGLTSLNELEI-KALSLRNYQSQSL---KSIRDIHHLTLHLSESAFLLE---- 189

Query: 334 SSRKLTCGSDGFPNLKVLHLK 354
                   +D   +++ L L+
Sbjct: 190 ------IFADILSSVRYLELR 204

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 31/204 (15%), Positives = 61/204 (29%), Gaps = 39/204 (19%)

Query: 146 VLDLGSLVLIHYLSGI-ENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDM---PFSYI 201
            L +    L + LS +   L  ++ + +    +  +P     +L +L  LD+        
Sbjct: 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEE 349

Query: 202 D-HTADEFWKMNNLRHLNFG-----SITLPAHPRKYCRSLENL----NFISALHPCCCTE 251
               +       +L+ L        S+          ++L +L    N    +   C   
Sbjct: 350 YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQ-- 407

Query: 252 DILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVS------ESKMPTLSKI-- 303
                   +R L    +LS    +     C    LE L + +         +P L ++  
Sbjct: 408 ----WPEKMRFL----NLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYI 458

Query: 304 ------VLVEYQFPPRLTHLSFSN 321
                  L +    P L  +  S 
Sbjct: 459 SRNKLKTLPDASLFPVLLVMKISR 482

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 35/238 (14%), Positives = 68/238 (28%), Gaps = 39/238 (16%)

Query: 130 SDFAHLDDYDSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLN-----IPSLKSLPSPL 184
            D + L        +L L+L    +     G  +  + + L        +   K L +  
Sbjct: 171 EDMSSL----QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNST 226

Query: 185 LSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGS---ITLPAHPRKYCRSLENL--- 238
           + +L      DM    I     E     ++  +N        + ++       L+ L   
Sbjct: 227 IQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLT 286

Query: 239 -NFISALHPCCCTEDILGRLPNLRNLRIWGDLSY--YQSLLSQSLCTLTCLESLKLVSES 295
              +S L         L  L  L+ L     LS   +++L   S      L  L +    
Sbjct: 287 ATHLSEL------PSGLVGLSTLKKL----VLSANKFENLCQISASNFPSLTHLSI---K 333

Query: 296 KMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHL 353
                 ++     +    L  L  S+ ++                      +L+ L+L
Sbjct: 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR--------NLSHLQSLNL 383

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 38/194 (19%), Positives = 63/194 (32%), Gaps = 24/194 (12%)

Query: 167 LRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGS---IT 223
           +  + L      ++ S        L  LD+  +++         ++ L+ L   +     
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFEN 315

Query: 224 LPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSY----YQSLLSQS 279
           L         SL +L+              L  L NLR L    DLS+         +  
Sbjct: 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL----DLSHDDIETSDCCNLQ 371

Query: 280 LCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLT 339
           L  L+ L+SL L S ++  +L        +  P+L  L  + T L               
Sbjct: 372 LRNLSHLQSLNL-SYNEPLSLKTEAF---KECPQLELLDLAFTRLKVKDAQSPFQ----- 422

Query: 340 CGSDGFPNLKVLHL 353
                   LKVL+L
Sbjct: 423 ----NLHLLKVLNL 432

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 36/226 (15%), Positives = 69/226 (30%), Gaps = 30/226 (13%)

Query: 140 SHMHSL-VLDLGS--LVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDM 196
           S + +L  LDL    +  IH  +  ++   L  L L    L  +    LS    L  L  
Sbjct: 54  SRLINLTFLDLTRCQIYWIHEDT-FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112

Query: 197 PFSYIDHTADE-FWKMNNLRHLNFGS---ITLPAHPRKYCRSLENL----NFISALHPCC 248
             + I             L  L  GS    ++          L+ L    N I  L    
Sbjct: 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK-- 170

Query: 249 CTEDILGRLPNLRNLRIWGDLSYYQ-SLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVE 307
              + +  L    NL +  +L+    + +          +SL       +  + K  L  
Sbjct: 171 ---EDMSSLQQATNLSL--NLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKG-LKN 224

Query: 308 YQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHL 353
                 L   +F + +  +   +      ++        +++ ++L
Sbjct: 225 STI-QSLWLGTFEDMDDEDISPAVFEGLCEM--------SVESINL 261

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 46/219 (21%), Positives = 77/219 (35%), Gaps = 42/219 (19%)

Query: 140 SHMHSL-VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPF 198
                L  LDL +  L    SG+  L  L+ L L+    ++L     SN  +L  L +  
Sbjct: 275 HCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334

Query: 199 SYI--DHTADEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGR 256
           +    +        + NLR L+                    + I     C      L  
Sbjct: 335 NTKRLELGTGCLENLENLRELDLSH-----------------DDIETSDCC---NLQLRN 374

Query: 257 LPNLRNLRIWGDLSY--YQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRL 314
           L +L++L    +LSY    SL +++      LE L L + +++          +Q    L
Sbjct: 375 LSHLQSL----NLSYNEPLSLKTEAFKECPQLELLDL-AFTRLKVK--DAQSPFQNLHLL 427

Query: 315 THLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHL 353
             L+ S++ L          S +      G P L+ L+L
Sbjct: 428 KVLNLSHSLL--------DISSEQLFD--GLPALQHLNL 456

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 24/135 (17%), Positives = 45/135 (33%), Gaps = 19/135 (14%)

Query: 167 LRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADE-FWKMNNLRHLNFGS---I 222
              L+ +   L ++ +   S L+NL  LD+    I    ++ F   + L  L   +   I
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94

Query: 223 TLPAHPRKYCRSLENL----NFISALHPCCCTEDILGRLPNLRNLRIWGDLSY--YQSLL 276
            +        ++L++L      IS++         L     L +L     L      S+ 
Sbjct: 95  FMAETALSGPKALKHLFFIQTGISSIDF-----IPLHNQKTLESL----YLGSNHISSIK 145

Query: 277 SQSLCTLTCLESLKL 291
                    L+ L  
Sbjct: 146 LPKGFPTEKLKVLDF 160

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 29/168 (17%), Positives = 58/168 (34%), Gaps = 26/168 (15%)

Query: 140 SHMHSL-VLDLGS--LVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDM 196
                L +LDL    L +    S  +NL LL+ L L+   L      L   L  L  L++
Sbjct: 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL 456

Query: 197 ---PFSYIDH-TADEFWKMNNLRHLNFGS---ITLPAHPRKYCRSLENL----NFISALH 245
               F   +    +    +  L  L        ++  H     + + ++    N +++  
Sbjct: 457 QGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSS 516

Query: 246 PCCCTEDILGRLPNLRNLRIWGDLSYYQ--SLLSQSLCTLTCLESLKL 291
                      L +L+ + +  +L+      +L   L  L+   ++ L
Sbjct: 517 I--------EALSHLKGIYL--NLASNHISIILPSLLPILSQQRTINL 554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 44/203 (21%), Positives = 75/203 (36%), Gaps = 35/203 (17%)

Query: 162 ENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDM---PFSYIDHTADEFWKMNNLRHLN 218
            NLF LR L L    LK +P  + + L NL  LD+       +      F  + NL+ L 
Sbjct: 77  NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYM--FQDLYNLKSLE 134

Query: 219 FGS---ITLPAHPRKYCRSLENL----NFISALHPCCCTEDILGRLPNLRNLRIWG-DLS 270
            G    + +         SLE L      ++++       + L  L  L  LR+   +++
Sbjct: 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT-----EALSHLHGLIVLRLRHLNIN 189

Query: 271 YYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKS 330
              ++   S   L  L+ L++     + T++   L    +   LT LS ++  L   P  
Sbjct: 190 ---AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL----YGLNLTSLSITHCNLTAVP-- 240

Query: 331 RASSSRKLTCGSDGFPNLKVLHL 353
                            L+ L+L
Sbjct: 241 --------YLAVRHLVYLRFLNL 255

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.4 bits (105), Expect = 6e-05
 Identities = 42/211 (19%), Positives = 70/211 (33%), Gaps = 19/211 (9%)

Query: 162 ENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHT--ADEFWKMNNLRHLNF 219
           + L     L L+   ++++ +     L  L  L++   Y   T   + F  + NLR L+ 
Sbjct: 21  QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 220 GS---ITLPAHPRKYCRSLENLNFIS-ALHPCCCTEDILGRLPNLRNLRIWGDLSY--YQ 273
           GS     L     +    L  L      L      +     L  L  L    DLS    +
Sbjct: 81  GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL----DLSKNQIR 136

Query: 274 SL-LSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRA 332
           SL L  S   L  L+S+   S +++  + +  L   Q    L+  S +   L        
Sbjct: 137 SLYLHPSFGKLNSLKSIDF-SSNQIFLVCEHELEPLQGKT-LSFFSLAANSLYSRVSVDW 194

Query: 333 SSSRKLTCGSDGFPNLKVLHLKSMLWLEEWT 363
                          L++L +    W  + T
Sbjct: 195 GKCM----NPFRNMVLEILDVSGNGWTVDIT 221

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 37/218 (16%), Positives = 64/218 (29%), Gaps = 43/218 (19%)

Query: 162 ENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDM---PFSYIDHTADEFWKMNNLRHLN 218
             L  L+ L L+   L  L S     L  +  +D+     + I      F  +  L+ L+
Sbjct: 311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQT--FKFLEKLQTLD 368

Query: 219 FGS--ITLPAHPRKYCRSLENLNFISALHPCCCTEDIL----------------GRLPNL 260
                +T             + N +  L     T +++                 R+P+L
Sbjct: 369 LRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHL 428

Query: 261 RNLRIWGDLSYYQ--SLLSQSLCT-LTCLESLKLVSESKMPTLSKIVLVEYQFP--PRLT 315
           + L     L+  +  S       +    LE L L  E+ +    +  L    F     L 
Sbjct: 429 QIL----ILNQNRFSSCSGDQTPSENPSLEQLFL-GENMLQLAWETELCWDVFEGLSHLQ 483

Query: 316 HLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHL 353
            L  ++  L   P                   L+ L L
Sbjct: 484 VLYLNHNYLNSLPPGV----------FSHLTALRGLSL 511

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 36/180 (20%), Positives = 66/180 (36%), Gaps = 32/180 (17%)

Query: 154 LIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNN 213
            I  +S ++NL  LR L LN  ++  +    L+NL  +Y+L++  ++          M  
Sbjct: 99  KITDISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTG 156

Query: 214 LRHLNFGS--IT-LPAHPRKYCRSLENL----NFISALHPCCCTEDILGRLPNLRNLRIW 266
           L +L      +  +   P      L +L    N I  + P       L  L +L      
Sbjct: 157 LNYLTVTESKVKDVT--PIANLTDLYSLSLNYNQIEDISP-------LASLTSLHYF--- 204

Query: 267 GDLSYYQSLLSQSLCTLTCLESLKLVSE--SKMPTLSKIVLVEYQFPPRLTHLSFSNTEL 324
                 Q      +  +T L SLK+ +   + +  L+ +         +LT L     ++
Sbjct: 205 -TAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANL--------SQLTWLEIGTNQI 255

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 45/225 (20%), Positives = 74/225 (32%), Gaps = 54/225 (24%)

Query: 162 ENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDM---PFSYIDHTADEFWKMNNLRHLN 218
             L  L  L+L    L  +PS     L  L  L +   P   I   A  F ++ +L  L+
Sbjct: 120 NGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYA--FNRVPSLMRLD 177

Query: 219 FGSI----TLPAHPRKYCRSLENL----NFISALHPCCCTEDILGRLPNLRNLRIWGDLS 270
            G +     +     +   +L+ L      I  +         L  L  L  L    ++S
Sbjct: 178 LGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-------LTPLVGLEEL----EMS 226

Query: 271 Y--YQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQ-FP--PRLTHLSFSNTELM 325
              +  +   S   L+ L+ L +++       S++ L+E   F     L  L+ ++  L 
Sbjct: 227 GNHFPEIRPGSFHGLSSLKKLWVMN-------SQVSLIERNAFDGLASLVELNLAHNNLS 279

Query: 326 EDPKSRASSSRKLTCGSDGFPNLKVLHLKS--------MLWLEEW 362
             P                   L  LHL          +LWL  W
Sbjct: 280 SLPHD----------LFTPLRYLVELHLHHNPWNCDCDILWLAWW 314

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 40/204 (19%), Positives = 71/204 (34%), Gaps = 42/204 (20%)

Query: 167 LRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDH-TADEFWKMNNLRHLNFGS--IT 223
            RYL L   +++ + +    +L +L  L +  + I       F  + +L  L      +T
Sbjct: 77  TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT 136

Query: 224 -LPAHPRKYCRSLENL----NFISALHPCCCTEDILGRLPNLRNLRIWGDLSYY---QSL 275
            +P+   +Y   L  L    N I ++           R+P+L  L    DL      + +
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPIESIPS-----YAFNRVPSLMRL----DLGELKKLEYI 187

Query: 276 LSQSLCTLTCLESLKLV--SESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRAS 333
              +   L  L+ L L   +   MP L+ +          L  L  S             
Sbjct: 188 SEGAFEGLFNLKYLNLGMCNIKDMPNLTPL--------VGLEELEMSGNHF--------- 230

Query: 334 SSRKLTCGS-DGFPNLKVLHLKSM 356
              ++  GS  G  +LK L + + 
Sbjct: 231 --PEIRPGSFHGLSSLKKLWVMNS 252

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 17/116 (14%)

Query: 162 ENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDM---PFSYIDHTADEFWKMNNLRHLN 218
             L  L+YL L   +L++LP     +L NL  L +     S +   A  F  +++L  L 
Sbjct: 126 RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA--FRGLHSLDRLL 183

Query: 219 FGS---ITLPAHPRKYCRSLENL----NFISALHPCCCTEDILGRLPNLRNLRIWG 267
                   +  H  +    L  L    N +SAL       + L  L  L+ LR+  
Sbjct: 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT-----EALAPLRALQYLRLND 234

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 40/264 (15%), Positives = 79/264 (29%), Gaps = 65/264 (24%)

Query: 155 IHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNL 214
           I  +   +         L   S+    +   + L ++  +    S I         + N+
Sbjct: 11  IKQIFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-QGIQYLPNV 67

Query: 215 RHLNFG-----SITLPAHPRKYCRSLENLNF----ISALHPCCCTEDILGRLPNLRNLRI 265
             L         I     P    ++L  L      I  L         L  L  L++L +
Sbjct: 68  TKLFLNGNKLTDIK----PLTNLKNLGWLFLDENKIKDLSS-------LKDLKKLKSLSL 116

Query: 266 WG----DLSYYQSLLSQSLCTLTCLESLKLVS--ESKMPTLSKIVLVEYQFPPRLTHLSF 319
                 D++         L  L  LESL L +   + +  LS++         +L  LS 
Sbjct: 117 EHNGISDIN--------GLVHLPQLESLYLGNNKITDITVLSRL--------TKLDTLSL 160

Query: 320 SNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECL---- 375
            + ++             +     G   L+ L+L     + +    +  +  L+ L    
Sbjct: 161 EDNQI-----------SDIV-PLAGLTKLQNLYLSKNH-ISDLR-ALAGLKNLDVLELFS 206

Query: 376 --IINPCAYLKKMPEQPWCIKSLN 397
              +N     +     P  +K+ +
Sbjct: 207 QECLNKPINHQSNLVVPNTVKNTD 230

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 33/161 (20%), Positives = 50/161 (31%), Gaps = 27/161 (16%)

Query: 146 VLDLGSLVLIHYLSGIENLFLLRYLKL--NIPSLKSLPSPLLSNLLNLYTLDMPFSYIDH 203
            L   S    +  S + +L  L +L L  N  S K   S       +L  LD+ F+ +  
Sbjct: 329 RLTFTSNKGGNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387

Query: 204 TADEFWKMNNLRHLNFGS---ITLPAHPRKYCRSLENL-------NFISALHPCCCTEDI 253
            +  F  +  L HL+F       +         SL NL                     I
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMS--EFSVFLSLRNLIYLDISHTHTRVAFN-----GI 440

Query: 254 LGRLPNLRNLRIWGDLSY---YQSLLSQSLCTLTCLESLKL 291
              L +L  L     ++     ++ L      L  L  L L
Sbjct: 441 FNGLSSLEVL----KMAGNSFQENFLPDIFTELRNLTFLDL 477

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 30/136 (22%), Positives = 51/136 (37%), Gaps = 20/136 (14%)

Query: 167 LRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADE-FWKMNNLRHLNFGS---I 222
            + L L+   L+ L S    +   L  LD+    I    D  +  +++L  L        
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 223 TLPAHPRKYCRSLENL----NFISALHPCCCTEDILGRLPNLRNLRIWGDLSY--YQSL- 275
           +L         SL+ L      +++L         +G L  L+ L    ++++   QS  
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLEN-----FPIGHLKTLKEL----NVAHNLIQSFK 140

Query: 276 LSQSLCTLTCLESLKL 291
           L +    LT LE L L
Sbjct: 141 LPEYFSNLTNLEHLDL 156

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 44/225 (19%), Positives = 75/225 (33%), Gaps = 54/225 (24%)

Query: 162 ENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDM---PFSYIDHTADEFWKMNNLRHLN 218
             L  L  L+L    L ++P+     L  L  L +   P   I   A  F ++ +LR L+
Sbjct: 109 NGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYA--FNRIPSLRRLD 166

Query: 219 FGSI----TLPAHPRKYCRSLENL----NFISALHPCCCTEDILGRLPNLRNLRIWGDLS 270
            G +     +     +   +L  L      +  +         L  L  L  L    DLS
Sbjct: 167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-------LTPLIKLDEL----DLS 215

Query: 271 Y--YQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQ-FP--PRLTHLSFSNTELM 325
                ++   S   L  L+ L ++        S+I ++E   F     L  ++ ++  L 
Sbjct: 216 GNHLSAIRPGSFQGLMHLQKLWMIQ-------SQIQVIERNAFDNLQSLVEINLAHNNLT 268

Query: 326 EDPKSRASSSRKLTCGSDGFPNLKVLHLKS--------MLWLEEW 362
             P                  +L+ +HL          +LWL  W
Sbjct: 269 LLPHD----------LFTPLHHLERIHLHHNPWNCNCDILWLSWW 303

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 40/204 (19%), Positives = 69/204 (33%), Gaps = 42/204 (20%)

Query: 167 LRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDH-TADEFWKMNNLRHLNFGS--IT 223
            R L L+   ++ +      +L +L  L +  ++I       F  + NL  L      +T
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125

Query: 224 -LPAHPRKYCRSLENL----NFISALHPCCCTEDILGRLPNLRNLRIWGDLSYY---QSL 275
            +P     Y   L+ L    N I ++           R+P+LR L    DL        +
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIESIPS-----YAFNRIPSLRRL----DLGELKRLSYI 176

Query: 276 LSQSLCTLTCLESLKLVSE--SKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRAS 333
              +   L+ L  L L      ++P L+ +         +L  L  S   L         
Sbjct: 177 SEGAFEGLSNLRYLNLAMCNLREIPNLTPL--------IKLDELDLSGNHL--------- 219

Query: 334 SSRKLTCGS-DGFPNLKVLHLKSM 356
               +  GS  G  +L+ L +   
Sbjct: 220 --SAIRPGSFQGLMHLQKLWMIQS 241

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 37/201 (18%), Positives = 70/201 (34%), Gaps = 34/201 (16%)

Query: 167 LRYLKLNIPSLKSLPSPLLSNLLNLYTLDM---PFSYIDHTADEFWKMNNLRHLNFGS-- 221
              L+L    L+SLP  +   L  L  L +     S+    +   +   +L++L+     
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 222 -ITLPAHPRKYCRSLENL----NFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQ--S 274
            IT+ ++       LE+L    + +  +        +   L NL  L    D+S+     
Sbjct: 90  VITMSSN-FLGLEQLEHLDFQHSNLKQMSE----FSVFLSLRNLIYL----DISHTHTRV 140

Query: 275 LLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASS 334
             +     L+ LE LK+   S        +         LT L  S  +L +   +    
Sbjct: 141 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIF---TELRNLTFLDLSQCQLEQLSPT---- 193

Query: 335 SRKLTCGSDGFPNLKVLHLKS 355
                   +   +L+VL++  
Sbjct: 194 ------AFNSLSSLQVLNMSH 208

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	430
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.91
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.91
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.91
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.9
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.9
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.89
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.89
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.89
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.89
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.89
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.88
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.88
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.88
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.88
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.87
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.87
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.87
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.87
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.87
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.87
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.87
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.87
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.86
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.86
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.86
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.86
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.86
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.85
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.85
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.85
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.85
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.85
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.85
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.85
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.85
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.85
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.84
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.84
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.84
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.84
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.83
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.83
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.83
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.83
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.83
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.83
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.83
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.83
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.82
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.81
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.81
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.81
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.8
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.8
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.8
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.8
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.79
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.79
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.78
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.78
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.78
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.78
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.78
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.77
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.76
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.75
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.75
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.75
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.72
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.71
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.71
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.7
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.7
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.7
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.7
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.68
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.68
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.67
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.67
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.66
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.66
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.65
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.65
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.64
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.63
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.62
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.61
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.61
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.6
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.59
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.58
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.58
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.56
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.56
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.55
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.55
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.55
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.55
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.54
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.54
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.54
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.53
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.52
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.52
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.51
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.5
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.5
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.49
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.49
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.48
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.47
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.47
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.47
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.46
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.46
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.46
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.44
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.44
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.42
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.42
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.42
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.39
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.38
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.37
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.36
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.34
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.33
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.33
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.33
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.32
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.31
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.3
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.3
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.28
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.28
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.26
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.18
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.18
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.15
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.13
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.02
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.92
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.9
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.82
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	98.73
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.69
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.65
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.61
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.61
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.27
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.19
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.1
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.99
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.99
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.94
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.9
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.84
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.82
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.75
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.44
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.13
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.68
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.25
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.7
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.59
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.5
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	93.77

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.91  E-value=4.7e-24  Score=206.23  Aligned_cols=270  Identities=18%  Similarity=0.171  Sum_probs=173.7

Q ss_pred             CCCCeeEEEEeecCCCccccccc---cCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCc
Q 047903          116 SRKNVKRINVFEKQSDFAHLDDY---DSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNL  191 (430)
Q Consensus       116 ~~~~~r~L~l~~~~~~~~~~~~~---~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L  191 (430)
                      ...+++.+.+. ++....++..+   +++|+  +|++++|.++.++ ..|+.+++|++|++++|.++.+|+..|+++++|
T Consensus        43 ~l~~l~~l~l~-~~~l~~l~~~~~~~l~~L~--~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  119 (390)
T 3o6n_A           43 TLNNQKIVTFK-NSTMRKLPAALLDSFRQVE--LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL  119 (390)
T ss_dssp             GGCCCSEEEEE-SCEESEECTHHHHHCCCCS--EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             ccCCceEEEec-CCchhhCChhHhcccccCc--EEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence            34678899998 77777777764   78888  8999999988776 488899999999999999988866655899999


Q ss_pred             cEEecCCCCccccchh-hccCcccceeecCCcccCCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEE
Q 047903          192 YTLDMPFSYIDHTADE-FWKMNNLRHLNFGSITLPAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIW  266 (430)
Q Consensus       192 ~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~  266 (430)
                      ++|++++|.++.+|.. ++++++|++|++++|.+.. ++    +.+++|+.|.+.++.....   . ++.+++|+.|+++
T Consensus       120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~---~-~~~l~~L~~L~l~  194 (390)
T 3o6n_A          120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHV---D-LSLIPSLFHANVS  194 (390)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTSSCTTCCEEECCSSCCSBC---C-GGGCTTCSEEECC
T ss_pred             CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc-cChhhccCCCCCCEEECCCCcCCcc---c-cccccccceeecc
Confidence            9999999998888877 5889999999999998887 54    4455566655554443222   2 4445666666665


Q ss_pred             ccccccHHHHHHHhcCCCCCCEEEEecCC-------CCCCceEEEE---------EcccccCCcceEEEEccccCCccc-
Q 047903          267 GDLSYYQSLLSQSLCTLTCLESLKLVSES-------KMPTLSKIVL---------VEYQFPPRLTHLSFSNTELMEDPK-  329 (430)
Q Consensus       267 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-------~~~~L~~L~l---------~~~~lp~~L~~L~L~~~~l~~~~~-  329 (430)
                      ++.  ..     .+....+|+.|+++++.       .+++|+.|++         ++..+ ++|++|++++|.+...+. 
T Consensus       195 ~n~--l~-----~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~  266 (390)
T 3o6n_A          195 YNL--LS-----TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNY-PGLVEVDLSYNELEKIMYH  266 (390)
T ss_dssp             SSC--CS-----EEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGC-TTCSEEECCSSCCCEEESG
T ss_pred             ccc--cc-----ccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCC-CCccEEECCCCcCCCcChh
Confidence            553  10     11222334444443310       0223333333         22333 444444444444332110 


Q ss_pred             ------------ccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEcCCccccccEeEEeecCCCCcCCCCCCCCCCCC
Q 047903          330 ------------SRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLN  397 (430)
Q Consensus       330 ------------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~  397 (430)
                                  ...-....++.....+++|+.|+++++ .+..++...+.+++|++|++++|+ +..+|  +..+++|+
T Consensus       267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~  342 (390)
T 3o6n_A          267 PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLK  342 (390)
T ss_dssp             GGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCS
T ss_pred             HccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc-cceeC--chhhccCC
Confidence                        000000122233456788888888873 566665555667888888888865 66665  67788999


Q ss_pred             EEEEecCh
Q 047903          398 KFNCWWPQ  405 (430)
Q Consensus       398 ~L~l~~~~  405 (430)
                      +|++++|+
T Consensus       343 ~L~l~~N~  350 (390)
T 3o6n_A          343 NLTLSHND  350 (390)
T ss_dssp             EEECCSSC
T ss_pred             EEEcCCCC
Confidence            99999887

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.91  E-value=5.4e-24  Score=211.30  Aligned_cols=270  Identities=20%  Similarity=0.152  Sum_probs=200.0

Q ss_pred             CCCCeeEEEEeecCCCcccc-ccc--cCcceEEEEEecCCccccc-ccccccccCCceeecCCCCCcccChHhhhcCCCc
Q 047903          116 SRKNVKRINVFEKQSDFAHL-DDY--DSHMHSLVLDLGSLVLIHY-LSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNL  191 (430)
Q Consensus       116 ~~~~~r~L~l~~~~~~~~~~-~~~--~~~L~~L~L~l~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L  191 (430)
                      .+..++.|.+. ++.+..+. ..+  +++|+  +|++++|.++.+ |..|+++++|++|++++|.++.+|...|+++++|
T Consensus        30 ~~~~l~~L~L~-~n~l~~~~~~~~~~l~~L~--~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  106 (477)
T 2id5_A           30 IPTETRLLDLG-KNRIKTLNQDEFASFPHLE--ELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNL  106 (477)
T ss_dssp             CCTTCSEEECC-SSCCCEECTTTTTTCTTCC--EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTC
T ss_pred             CCCCCcEEECC-CCccceECHhHccCCCCCC--EEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCC
Confidence            35678899998 66666554 344  78888  899999988866 6788899999999999999998887766899999


Q ss_pred             cEEecCCCCcccc-chhhccCcccceeecCCcccCCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEE
Q 047903          192 YTLDMPFSYIDHT-ADEFWKMNNLRHLNFGSITLPAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIW  266 (430)
Q Consensus       192 ~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~  266 (430)
                      ++|++++|.+..+ |..+.++++|++|++++|.+.. ++    ..+++|+.|.+..+......... +..+++|+.|++.
T Consensus       107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~  184 (477)
T 2id5_A          107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY-ISHRAFSGLNSLEQLTLEKCNLTSIPTEA-LSHLHGLIVLRLR  184 (477)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCE-ECTTSSTTCTTCCEEEEESCCCSSCCHHH-HTTCTTCCEEEEE
T ss_pred             CEEECCCCccccCChhHccccccCCEEECCCCccce-eChhhccCCCCCCEEECCCCcCcccChhH-hcccCCCcEEeCC
Confidence            9999999988866 4458889999999999998877 44    56677777777666554444455 8888999999998


Q ss_pred             ccccccHHHHHHHhcCCCCCCEEEEecCCC----------CCCceEEEE-----------EcccccCCcceEEEEccccC
Q 047903          267 GDLSYYQSLLSQSLCTLTCLESLKLVSESK----------MPTLSKIVL-----------VEYQFPPRLTHLSFSNTELM  325 (430)
Q Consensus       267 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~----------~~~L~~L~l-----------~~~~lp~~L~~L~L~~~~l~  325 (430)
                      ++.  .....+..+..+++|+.|+++++..          ..+|+.|++           .+..+ ++|+.|+|++|.+.
T Consensus       185 ~n~--i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~  261 (477)
T 2id5_A          185 HLN--INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL-VYLRFLNLSYNPIS  261 (477)
T ss_dssp             SCC--CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTC-TTCCEEECCSSCCC
T ss_pred             CCc--CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCc-cccCeeECCCCcCC
Confidence            886  3333345677888899999886110          225666666           23455 67777777777654


Q ss_pred             CcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceE-EcCCccccccEeEEeecCCCCcCCC-CCCCCCCCCEEEEec
Q 047903          326 EDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWT-MGIGAMPKLECLIINPCAYLKKMPE-QPWCIKSLNKFNCWW  403 (430)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~  403 (430)
                      ..+          ......+++|+.|++++ +.+..+. .....+++|+.|++++| .++.+|. .+..+++|++|++++
T Consensus       262 ~~~----------~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~  329 (477)
T 2id5_A          262 TIE----------GSMLHELLRLQEIQLVG-GQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDS  329 (477)
T ss_dssp             EEC----------TTSCTTCTTCCEEECCS-SCCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCS
T ss_pred             ccC----------hhhccccccCCEEECCC-CccceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccC
Confidence            321          01135678999999998 4566553 33457899999999997 5777765 468899999999998


Q ss_pred             Ch
Q 047903          404 PQ  405 (430)
Q Consensus       404 ~~  405 (430)
                      |+
T Consensus       330 N~  331 (477)
T 2id5_A          330 NP  331 (477)
T ss_dssp             SC
T ss_pred             CC
Confidence            66

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.91  E-value=1.5e-24  Score=204.53  Aligned_cols=233  Identities=21%  Similarity=0.190  Sum_probs=188.5

Q ss_pred             cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceee
Q 047903          139 DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLN  218 (430)
Q Consensus       139 ~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~  218 (430)
                      ..+++  .|++++|.++.+|..++++++|++|++++|.++.+|..+ +++++|++|++++|.++.+|..++++++|++|+
T Consensus        80 ~~~l~--~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRV--ALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCC--EEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEE
T ss_pred             cccee--EEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEE
Confidence            46777  999999999999999999999999999999999999988 999999999999999999999999999999999


Q ss_pred             cCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCCCC
Q 047903          219 FGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMP  298 (430)
Q Consensus       219 l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  298 (430)
                      +++|...+.+|..+...            ..... ++.+++|++|++++|.  .. .++..+..+++|+.|++++    .
T Consensus       157 L~~n~~~~~~p~~~~~~------------~~~~~-~~~l~~L~~L~L~~n~--l~-~lp~~l~~l~~L~~L~L~~----N  216 (328)
T 4fcg_A          157 IRACPELTELPEPLAST------------DASGE-HQGLVNLQSLRLEWTG--IR-SLPASIANLQNLKSLKIRN----S  216 (328)
T ss_dssp             EEEETTCCCCCSCSEEE------------C-CCC-EEESTTCCEEEEEEEC--CC-CCCGGGGGCTTCCEEEEES----S
T ss_pred             CCCCCCccccChhHhhc------------cchhh-hccCCCCCEEECcCCC--cC-cchHhhcCCCCCCEEEccC----C
Confidence            99988777576322211            11123 6667888888888875  22 5566677888888888885    2


Q ss_pred             CceEEEEEcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEcCCccccccEeEEe
Q 047903          299 TLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIIN  378 (430)
Q Consensus       299 ~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~  378 (430)
                      .+..+.-.+..+ ++|++|++++|.+...          ++.....+++|+.|++++++....++...+.+++|+.|+++
T Consensus       217 ~l~~l~~~l~~l-~~L~~L~Ls~n~~~~~----------~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~  285 (328)
T 4fcg_A          217 PLSALGPAIHHL-PKLEELDLRGCTALRN----------YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR  285 (328)
T ss_dssp             CCCCCCGGGGGC-TTCCEEECTTCTTCCB----------CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECT
T ss_pred             CCCcCchhhccC-CCCCEEECcCCcchhh----------hHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCC
Confidence            333332245677 8999999999886542          22335678999999999988888888777889999999999


Q ss_pred             ecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903          379 PCAYLKKMPEQPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       379 ~c~~l~~lp~~l~~l~~L~~L~l~~~~  405 (430)
                      +|+.++.+|..+.++++|+.+++....
T Consensus       286 ~n~~~~~iP~~l~~L~~L~~l~l~~~~  312 (328)
T 4fcg_A          286 GCVNLSRLPSLIAQLPANCIILVPPHL  312 (328)
T ss_dssp             TCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred             CCCchhhccHHHhhccCceEEeCCHHH
Confidence            999999999999999999999887543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.90  E-value=2.8e-24  Score=225.35  Aligned_cols=108  Identities=13%  Similarity=0.056  Sum_probs=63.8

Q ss_pred             CCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEcCCccccccEeEEeecCCCCcCCCCCC
Q 047903          312 PRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPW  391 (430)
Q Consensus       312 ~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~  391 (430)
                      ++|+.|++++|.+...          ++...+.+++|+.|+++++.-...+|...+.+++|+.|++++|.....+|..+.
T Consensus       632 ~~L~~LdLs~N~l~g~----------ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~  701 (768)
T 3rgz_A          632 GSMMFLDMSYNMLSGY----------IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS  701 (768)
T ss_dssp             BCCCEEECCSSCCBSC----------CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG
T ss_pred             ccccEEECcCCccccc----------CCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh
Confidence            5566666666665432          122345677888888887433335676677888999999998876668888888


Q ss_pred             CCCCCCEEEEecChH--------HH------------------HHHhhhccCccceeeecccCC
Q 047903          392 CIKSLNKFNCWWPQL--------EL------------------RQKLREFEDKEQYGIQLYPYG  429 (430)
Q Consensus       392 ~l~~L~~L~l~~~~~--------~~------------------~~~~~~~~~~~~~~i~~ip~~  429 (430)
                      .+++|++|++++|+-        .+                  ...+...++++|++|+|+|.+
T Consensus       702 ~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~  765 (768)
T 3rgz_A          702 ALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHH  765 (768)
T ss_dssp             GCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC-------------
T ss_pred             CCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCcccc
Confidence            999999999876530        00                  114555678899999999864

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=1.5e-23  Score=213.76  Aligned_cols=270  Identities=18%  Similarity=0.167  Sum_probs=166.7

Q ss_pred             CCCeeEEEEeecCCCccccccc---cCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCcc
Q 047903          117 RKNVKRINVFEKQSDFAHLDDY---DSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLY  192 (430)
Q Consensus       117 ~~~~r~L~l~~~~~~~~~~~~~---~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~  192 (430)
                      ..+++.+.+. ++....++..+   +++|+  +|++++|.++.++ ..|+.+++|++|++++|.++.+|+..|+++++|+
T Consensus        50 l~~l~~l~l~-~~~l~~lp~~~~~~l~~L~--~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  126 (597)
T 3oja_B           50 LNNQKIVTFK-NSTMRKLPAALLDSFRQVE--LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  126 (597)
T ss_dssp             GCCCSEEEES-SCEESEECTHHHHHCCCCS--EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCceEEEee-CCCCCCcCHHHHccCCCCc--EEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence            3567788887 66666666654   67777  8888888887665 4788888888888888888877766558888888


Q ss_pred             EEecCCCCccccchh-hccCcccceeecCCcccCCCcC---ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEcc
Q 047903          193 TLDMPFSYIDHTADE-FWKMNNLRHLNFGSITLPAHPR---KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGD  268 (430)
Q Consensus       193 ~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp---~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  268 (430)
                      +|+|++|.++.+|.. ++++++|++|++++|.+.+..|   +.+++|+.|.+.++.....   . ++.+++|+.|+++++
T Consensus       127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~-~~~l~~L~~L~l~~n  202 (597)
T 3oja_B          127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---D-LSLIPSLFHANVSYN  202 (597)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---C-GGGCTTCSEEECCSS
T ss_pred             EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---C-hhhhhhhhhhhcccC
Confidence            888888888888776 4788888888888888877223   3445555555444432211   2 444566666666555


Q ss_pred             ccccHHHHHHHhcCCCCCCEEEEecCC-------CCCCceEEEE---------EcccccCCcceEEEEccccCCccc---
Q 047903          269 LSYYQSLLSQSLCTLTCLESLKLVSES-------KMPTLSKIVL---------VEYQFPPRLTHLSFSNTELMEDPK---  329 (430)
Q Consensus       269 ~~~~~~~~~~~l~~l~~L~~L~l~~~~-------~~~~L~~L~l---------~~~~lp~~L~~L~L~~~~l~~~~~---  329 (430)
                      .  ..     .+....+|+.|+++++.       .+++|+.|.+         ++..+ ++|+.|+|++|.+...+.   
T Consensus       203 ~--l~-----~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l-~~L~~L~Ls~N~l~~~~~~~~  274 (597)
T 3oja_B          203 L--LS-----TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNY-PGLVEVDLSYNELEKIMYHPF  274 (597)
T ss_dssp             C--CS-----EEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGC-TTCSEEECCSSCCCEEESGGG
T ss_pred             c--cc-----cccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccC-CCCCEEECCCCccCCCCHHHh
Confidence            3  10     12223344444444310       0223343333         23334 444555554444433210   


Q ss_pred             ----------ccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEcCCccccccEeEEeecCCCCcCCCCCCCCCCCCEE
Q 047903          330 ----------SRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKF  399 (430)
Q Consensus       330 ----------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L  399 (430)
                                ........++.....+++|+.|++++ +.+..++...+.+++|+.|++++|. +..+|  +..+++|+.|
T Consensus       275 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~L  350 (597)
T 3oja_B          275 VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSH-NHLLHVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNL  350 (597)
T ss_dssp             TTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCS-SCCCCCGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEE
T ss_pred             cCccCCCEEECCCCCCCCCCcccccCCCCcEEECCC-CCCCccCcccccCCCCCEEECCCCC-CCCcC--hhhcCCCCEE
Confidence                      00000112233345578888888887 4566666555668888888888865 56665  6678899999


Q ss_pred             EEecCh
Q 047903          400 NCWWPQ  405 (430)
Q Consensus       400 ~l~~~~  405 (430)
                      ++++|+
T Consensus       351 ~l~~N~  356 (597)
T 3oja_B          351 TLSHND  356 (597)
T ss_dssp             ECCSSC
T ss_pred             EeeCCC
Confidence            999887

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.89  E-value=9.9e-23  Score=202.21  Aligned_cols=266  Identities=17%  Similarity=0.138  Sum_probs=205.1

Q ss_pred             eEEEEeecCCCccccccccCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCccc-ChHhhhcCCCccEEecCC
Q 047903          121 KRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSL-PSPLLSNLLNLYTLDMPF  198 (430)
Q Consensus       121 r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~i~~~L~~L~~L~L~~  198 (430)
                      +.+... +.....+|..+.++++  +|++++|.++.++ ..|.++++|++|++++|.++.+ |..+ +++++|++|+|++
T Consensus        14 ~~v~c~-~~~l~~ip~~~~~~l~--~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~   89 (477)
T 2id5_A           14 RAVLCH-RKRFVAVPEGIPTETR--LLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAF-NNLFNLRTLGLRS   89 (477)
T ss_dssp             TEEECC-SCCCSSCCSCCCTTCS--EEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCS
T ss_pred             CEEEeC-CCCcCcCCCCCCCCCc--EEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhh-hCCccCCEEECCC
Confidence            345555 5566668887788999  9999999999775 6899999999999999999988 4555 9999999999999


Q ss_pred             CCccccchh-hccCcccceeecCCcccCCCcC---ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHH
Q 047903          199 SYIDHTADE-FWKMNNLRHLNFGSITLPAHPR---KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQS  274 (430)
Q Consensus       199 ~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp---~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  274 (430)
                      |.++.+|.. +.++++|++|++++|.+....|   ..+++|+.|.+.++......+.. +..+++|++|++.++.  ...
T Consensus        90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~--l~~  166 (477)
T 2id5_A           90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRA-FSGLNSLEQLTLEKCN--LTS  166 (477)
T ss_dssp             SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTS-STTCTTCCEEEEESCC--CSS
T ss_pred             CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhh-ccCCCCCCEEECCCCc--Ccc
Confidence            999999876 7899999999999999988334   56677777777665544445556 8999999999999996  444


Q ss_pred             HHHHHhcCCCCCCEEEEecCC----------CCCCceEEEEE----c-------ccccCCcceEEEEccccCCccccccc
Q 047903          275 LLSQSLCTLTCLESLKLVSES----------KMPTLSKIVLV----E-------YQFPPRLTHLSFSNTELMEDPKSRAS  333 (430)
Q Consensus       275 ~~~~~l~~l~~L~~L~l~~~~----------~~~~L~~L~l~----~-------~~lp~~L~~L~L~~~~l~~~~~~~~~  333 (430)
                      ..+..+..+++|+.|+++++.          .+++|+.|++.    +       ... .+|+.|++++|.+...+.    
T Consensus       167 ~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~----  241 (477)
T 2id5_A          167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG-LNLTSLSITHCNLTAVPY----  241 (477)
T ss_dssp             CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTT-CCCSEEEEESSCCCSCCH----
T ss_pred             cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccC-ccccEEECcCCcccccCH----
Confidence            445678899999999998721          05577777661    1       122 377888888887654320    


Q ss_pred             CCCeEEEcCCCCCcccEEEEeeCCCCCceEEc-CCccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903          334 SSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMG-IGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       334 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  405 (430)
                            .....+++|+.|++++ +.+..++.. ...+++|+.|++++|......|..+..+++|++|++++|.
T Consensus       242 ------~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  307 (477)
T 2id5_A          242 ------LAVRHLVYLRFLNLSY-NPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ  307 (477)
T ss_dssp             ------HHHTTCTTCCEEECCS-SCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred             ------HHhcCccccCeeECCC-CcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence                  1235688999999998 446655432 3568999999999976444457788999999999999986

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.89  E-value=1.8e-23  Score=214.52  Aligned_cols=268  Identities=15%  Similarity=0.118  Sum_probs=152.7

Q ss_pred             CCCCeeEEEEeecCC-Cccccccc--cCcceEEEEEecCCc-cc--ccccccccc------cCCceeecCCCCCcccCh-
Q 047903          116 SRKNVKRINVFEKQS-DFAHLDDY--DSHMHSLVLDLGSLV-LI--HYLSGIENL------FLLRYLKLNIPSLKSLPS-  182 (430)
Q Consensus       116 ~~~~~r~L~l~~~~~-~~~~~~~~--~~~L~~L~L~l~~~~-l~--~lp~~~~~l------~~L~~L~L~~~~i~~lp~-  182 (430)
                      ...++++|.+. ++. ...+|+.+  +++|+  +|++++|. ++  .+|..++.+      ++|++|++++|+++.+|. 
T Consensus       247 ~l~~L~~L~L~-~n~l~~~~p~~l~~l~~L~--~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~  323 (636)
T 4eco_A          247 NLKDLTDVEVY-NCPNLTKLPTFLKALPEMQ--LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE  323 (636)
T ss_dssp             GCTTCCEEEEE-CCTTCSSCCTTTTTCSSCC--EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCH
T ss_pred             ccCCCCEEEec-CCcCCccChHHHhcCCCCC--EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCch
Confidence            45678888888 544 44566666  77888  88888887 77  477777766      788888888888888887 


Q ss_pred             -HhhhcCCCccEEecCCCCcc-ccchhhccCcccceeecCCcccCCCcC---ccCCC-CcccceeecCCCCcchhhhcCC
Q 047903          183 -PLLSNLLNLYTLDMPFSYID-HTADEFWKMNNLRHLNFGSITLPAHPR---KYCRS-LENLNFISALHPCCCTEDILGR  256 (430)
Q Consensus       183 -~i~~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~lp---~~l~~-L~~L~~~~~~~~~~~~~~~l~~  256 (430)
                       .+ +++++|++|++++|.+. .+| .++++++|++|++++|.+.. +|   ..+++ |+.|.+.++... ..+.. ++.
T Consensus       324 ~~l-~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~-~~~  398 (636)
T 4eco_A          324 TSL-QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLK-YIPNI-FDA  398 (636)
T ss_dssp             HHH-TTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEE-CCTTSEEECTTCCEEECCSSCCS-SCCSC-CCT
T ss_pred             hhh-ccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCcccc-ccHhhhhhcccCcEEEccCCcCc-ccchh-hhh
Confidence             66 88888888888888777 777 67777777777777777764 66   44444 555555444432 22222 333


Q ss_pred             CC--CCceEEEEccccccHHHHHHHhc-------CCCCCCEEEEecCC--C--------CCCceEEEE---Eccccc---
Q 047903          257 LP--NLRNLRIWGDLSYYQSLLSQSLC-------TLTCLESLKLVSES--K--------MPTLSKIVL---VEYQFP---  311 (430)
Q Consensus       257 l~--~L~~L~l~~~~~~~~~~~~~~l~-------~l~~L~~L~l~~~~--~--------~~~L~~L~l---~~~~lp---  311 (430)
                      ++  +|+.|++++|.  .....+..+.       .+.+|+.|+++++.  .        +++|+.|++   .+..+|   
T Consensus       399 ~~l~~L~~L~Ls~N~--l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~  476 (636)
T 4eco_A          399 KSVSVMSAIDFSYNE--IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNS  476 (636)
T ss_dssp             TCSSCEEEEECCSSC--TTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSS
T ss_pred             cccCccCEEECcCCc--CCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHH
Confidence            32  55666666554  3333333333       44455555555411  0        234444444   011110   


Q ss_pred             -----------CCcceEEEEccccCCcccccccCCCeEEEcCC--CCCcccEEEEeeCCCCCceEEcCCccccccEeEEe
Q 047903          312 -----------PRLTHLSFSNTELMEDPKSRASSSRKLTCGSD--GFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIIN  378 (430)
Q Consensus       312 -----------~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~  378 (430)
                                 ++|+.|++++|.+...|           ....  .+++|+.|++++ +.+..++...+.+++|+.|+++
T Consensus       477 ~~~~~~~~~~l~~L~~L~Ls~N~l~~lp-----------~~~~~~~l~~L~~L~Ls~-N~l~~ip~~~~~l~~L~~L~Ls  544 (636)
T 4eco_A          477 LKDENENFKNTYLLTSIDLRFNKLTKLS-----------DDFRATTLPYLVGIDLSY-NSFSKFPTQPLNSSTLKGFGIR  544 (636)
T ss_dssp             SEETTEECTTGGGCCEEECCSSCCCBCC-----------GGGSTTTCTTCCEEECCS-SCCSSCCCGGGGCSSCCEEECC
T ss_pred             hccccccccccCCccEEECcCCcCCccC-----------hhhhhccCCCcCEEECCC-CCCCCcChhhhcCCCCCEEECC
Confidence                       15666666666554322           1111  445555555555 3344444444445555555553


Q ss_pred             e------cCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903          379 P------CAYLKKMPEQPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       379 ~------c~~l~~lp~~l~~l~~L~~L~l~~~~  405 (430)
                      +      |.....+|..+..+++|++|++++|.
T Consensus       545 ~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  577 (636)
T 4eco_A          545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSND  577 (636)
T ss_dssp             SCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred             CCcccccCcccccChHHHhcCCCCCEEECCCCc
Confidence            2      22233445555555555555555544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.89  E-value=4.2e-23  Score=203.62  Aligned_cols=281  Identities=17%  Similarity=0.157  Sum_probs=159.3

Q ss_pred             CCCCeeEEEEeecCCCccc-cccc--cCcceEEEEEecCCccc-ccc-cccccccCCceeecCCCCCccc-ChHhhhcCC
Q 047903          116 SRKNVKRINVFEKQSDFAH-LDDY--DSHMHSLVLDLGSLVLI-HYL-SGIENLFLLRYLKLNIPSLKSL-PSPLLSNLL  189 (430)
Q Consensus       116 ~~~~~r~L~l~~~~~~~~~-~~~~--~~~L~~L~L~l~~~~l~-~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~i~~~L~  189 (430)
                      .++++++|.+. ++.+..+ +..+  +++|+  +|++++|.+. .++ ..|+++++|++|++++|.++.+ |..+ ++++
T Consensus        28 l~~~l~~L~Ls-~n~i~~~~~~~~~~l~~L~--~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~  103 (455)
T 3v47_A           28 LPAHVNYVDLS-LNSIAELNETSFSRLQDLQ--FLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAF-NGLA  103 (455)
T ss_dssp             CCTTCCEEECC-SSCCCEECTTTTSSCTTCC--EEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTT-TTCT
T ss_pred             CCCccCEEEec-CCccCcCChhHhccCcccc--EEECcCCcccceECcccccccccCCEEeCCCCccCccChhhc-cCcc
Confidence            34667777777 5555544 3444  67777  7777777765 443 5677777777777777777766 4444 7777


Q ss_pred             CccEEecCCCCccc-cchh--hccCcccceeecCCcccCCCcC----ccCCCCcccceeecCCCCcchhh----------
Q 047903          190 NLYTLDMPFSYIDH-TADE--FWKMNNLRHLNFGSITLPAHPR----KYCRSLENLNFISALHPCCCTED----------  252 (430)
Q Consensus       190 ~L~~L~L~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~----------  252 (430)
                      +|++|++++|.++. +|..  ++++++|++|++++|.+.+..|    ..+++|+.|.+.++......+..          
T Consensus       104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~  183 (455)
T 3v47_A          104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT  183 (455)
T ss_dssp             TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEE
T ss_pred             cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccc
Confidence            77777777777664 3443  6777777777777777776334    24455555554443321111111          


Q ss_pred             -----------------------hcCCCCCCceEEEEccccccHHHHHHHhcC---CCCCCEEEEecCC-----------
Q 047903          253 -----------------------ILGRLPNLRNLRIWGDLSYYQSLLSQSLCT---LTCLESLKLVSES-----------  295 (430)
Q Consensus       253 -----------------------~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~---l~~L~~L~l~~~~-----------  295 (430)
                                             .+..+++|++|+++++.  .....+..+..   ..+|+.|+++.+.           
T Consensus       184 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  261 (455)
T 3v47_A          184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG--FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF  261 (455)
T ss_dssp             EEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC--CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSS
T ss_pred             ccccccCcccccchhhccccccccccccceeeeEecCCCc--ccccchhhhhccccccceeeEeeccccccccccchhhh
Confidence                                   01244678889988886  44444443322   2444444444200           


Q ss_pred             -----------CCCCceEEEE-----------EcccccCCcceEEEEccccCCccc---cc--------cc--CCCeE-E
Q 047903          296 -----------KMPTLSKIVL-----------VEYQFPPRLTHLSFSNTELMEDPK---SR--------AS--SSRKL-T  339 (430)
Q Consensus       296 -----------~~~~L~~L~l-----------~~~~lp~~L~~L~L~~~~l~~~~~---~~--------~~--~~~~~-~  339 (430)
                                 .+++|+.|++           ++..+ ++|++|++++|.+...+.   ..        ..  ....+ +
T Consensus       262 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  340 (455)
T 3v47_A          262 KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF-TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS  340 (455)
T ss_dssp             CCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECG
T ss_pred             ccCcccccccccccCceEEEecCccccccchhhcccC-CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcCh
Confidence                       0123444443           23334 445555555544433210   00        00  00001 1


Q ss_pred             EcCCCCCcccEEEEeeCCCCCce-EEcCCccccccEeEEeecCCCCcCCC-CCCCCCCCCEEEEecCh
Q 047903          340 CGSDGFPNLKVLHLKSMLWLEEW-TMGIGAMPKLECLIINPCAYLKKMPE-QPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       340 ~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~~~  405 (430)
                      .....+++|++|++++ +.+..+ +...+.+++|++|++++| .++.+|. .+..+++|++|++++|+
T Consensus       341 ~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          341 RMFENLDKLEVLDLSY-NHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             GGGTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             hHhcCcccCCEEECCC-CcccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCC
Confidence            1235577888888887 345554 333456788888888886 4666665 45778888888888766

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.89  E-value=2.1e-22  Score=194.64  Aligned_cols=240  Identities=20%  Similarity=0.198  Sum_probs=157.6

Q ss_pred             CCCCeeEEEEeecCCCccccc-cc--cCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCc
Q 047903          116 SRKNVKRINVFEKQSDFAHLD-DY--DSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNL  191 (430)
Q Consensus       116 ~~~~~r~L~l~~~~~~~~~~~-~~--~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L  191 (430)
                      ..++++.|.+. ++.+..++. .+  +++|+  +|++++|.++.++ ..++++++|++|++++|.++.+|..+|+++++|
T Consensus        67 ~l~~L~~L~L~-~n~i~~~~~~~~~~l~~L~--~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L  143 (390)
T 3o6n_A           67 SFRQVELLNLN-DLQIEEIDTYAFAYAHTIQ--KLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL  143 (390)
T ss_dssp             HCCCCSEEECT-TSCCCEECTTTTTTCTTCC--EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             ccccCcEEECC-CCcccccChhhccCCCCcC--EEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCC
Confidence            34678888887 666655544 33  77777  8888888887665 457788888888888888888887766888888


Q ss_pred             cEEecCCCCccccch-hhccCcccceeecCCcccCCCcC-ccCCCCcccceeecCCC-----------------------
Q 047903          192 YTLDMPFSYIDHTAD-EFWKMNNLRHLNFGSITLPAHPR-KYCRSLENLNFISALHP-----------------------  246 (430)
Q Consensus       192 ~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~lp-~~l~~L~~L~~~~~~~~-----------------------  246 (430)
                      ++|++++|.+..++. .++++++|++|++++|.+.. ++ +.+++|+.|.+..+...                       
T Consensus       144 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~  222 (390)
T 3o6n_A          144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG  222 (390)
T ss_dssp             CEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEEC
T ss_pred             cEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-cccccccccceeecccccccccCCCCcceEEECCCCeeeeccc
Confidence            888888887777654 47788888888888888776 55 55555544433222110                       


Q ss_pred             ---------------CcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEEEccccc
Q 047903          247 ---------------CCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFP  311 (430)
Q Consensus       247 ---------------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp  311 (430)
                                     ...... ++.+++|++|+++++.  .....+..+..+++|+.|++++    ..++.++..+..+ 
T Consensus       223 ~~~~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~----n~l~~~~~~~~~l-  294 (390)
T 3o6n_A          223 PVNVELTILKLQHNNLTDTAW-LLNYPGLVEVDLSYNE--LEKIMYHPFVKMQRLERLYISN----NRLVALNLYGQPI-  294 (390)
T ss_dssp             CCCSSCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSC--CCEEESGGGTTCSSCCEEECCS----SCCCEEECSSSCC-
T ss_pred             cccccccEEECCCCCCcccHH-HcCCCCccEEECCCCc--CCCcChhHccccccCCEEECCC----CcCcccCcccCCC-
Confidence                           011123 4445555555555553  2222334445555555555552    3344443344567 


Q ss_pred             CCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEcCCccccccEeEEeecC
Q 047903          312 PRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCA  381 (430)
Q Consensus       312 ~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~  381 (430)
                      ++|+.|++++|.+...|           .....+++|+.|++++ +.+..++  .+.+++|+.|++++|+
T Consensus       295 ~~L~~L~L~~n~l~~~~-----------~~~~~l~~L~~L~L~~-N~i~~~~--~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          295 PTLKVLDLSHNHLLHVE-----------RNQPQFDRLENLYLDH-NSIVTLK--LSTHHTLKNLTLSHND  350 (390)
T ss_dssp             TTCCEEECCSSCCCCCG-----------GGHHHHTTCSEEECCS-SCCCCCC--CCTTCCCSEEECCSSC
T ss_pred             CCCCEEECCCCcceecC-----------ccccccCcCCEEECCC-CccceeC--chhhccCCEEEcCCCC
Confidence            88899999988875433           1124589999999998 4566664  5679999999999976

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.89  E-value=9.2e-23  Score=213.71  Aligned_cols=278  Identities=12%  Similarity=0.076  Sum_probs=175.6

Q ss_pred             CCCCeeEEEEeecCCCcc------------------ccccc----cCcceEEEEEecCCccc-ccccccccccCCceeec
Q 047903          116 SRKNVKRINVFEKQSDFA------------------HLDDY----DSHMHSLVLDLGSLVLI-HYLSGIENLFLLRYLKL  172 (430)
Q Consensus       116 ~~~~~r~L~l~~~~~~~~------------------~~~~~----~~~L~~L~L~l~~~~l~-~lp~~~~~l~~L~~L~L  172 (430)
                      ...+++.|.+. ++....                  +|+.+    +++|+  +|++++|.+. .+|..++++++|++|++
T Consensus       446 ~L~~L~~L~Ls-~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~--~L~Ls~N~l~~~iP~~l~~L~~L~~L~L  522 (876)
T 4ecn_A          446 RLTKLQIIYFA-NSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLT--DVELYNCPNMTQLPDFLYDLPELQSLNI  522 (876)
T ss_dssp             GCTTCCEEEEE-SCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCC--EEEEESCTTCCSCCGGGGGCSSCCEEEC
T ss_pred             cCCCCCEEECc-CCcCCCCcccccccccccccccccCChhhhhccCCCCC--EEECcCCCCCccChHHHhCCCCCCEEEC
Confidence            45678889988 666655                  66654    56666  8888888855 78888888889999999


Q ss_pred             CCCC-Ccc--cChHhhhcCC-------CccEEecCCCCccccch--hhccCcccceeecCCcccCCCcC--ccCCCCccc
Q 047903          173 NIPS-LKS--LPSPLLSNLL-------NLYTLDMPFSYIDHTAD--EFWKMNNLRHLNFGSITLPAHPR--KYCRSLENL  238 (430)
Q Consensus       173 ~~~~-i~~--lp~~i~~~L~-------~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~lp--~~l~~L~~L  238 (430)
                      ++|+ ++.  +|..+ ++++       +|++|++++|.+..+|.  .++++++|++|++++|.+.. +|  +.+++|+.|
T Consensus       523 s~N~~lsg~~iP~~i-~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~-lp~~~~L~~L~~L  600 (876)
T 4ecn_A          523 ACNRGISAAQLKADW-TRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH-LEAFGTNVKLTDL  600 (876)
T ss_dssp             TTCTTSCHHHHHHHH-HHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCB-CCCCCTTSEESEE
T ss_pred             cCCCCcccccchHHH-HhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCccc-chhhcCCCcceEE
Confidence            9887 774  78777 6665       88899998888888888  78888889999888888884 88  556666666


Q ss_pred             ceeecCCCCcchhhhcCCCCC-CceEEEEccccccHHHHHHHhcCCC--CCCEEEEecC---CC------------CCCc
Q 047903          239 NFISALHPCCCTEDILGRLPN-LRNLRIWGDLSYYQSLLSQSLCTLT--CLESLKLVSE---SK------------MPTL  300 (430)
Q Consensus       239 ~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~l~~l~--~L~~L~l~~~---~~------------~~~L  300 (430)
                      .+..+... ..+.. +..+++ |+.|++++|.  .. .+|..+..+.  +|+.|+++++   +.            .++|
T Consensus       601 ~Ls~N~l~-~lp~~-l~~l~~~L~~L~Ls~N~--L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L  675 (876)
T 4ecn_A          601 KLDYNQIE-EIPED-FCAFTDQVEGLGFSHNK--LK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA  675 (876)
T ss_dssp             ECCSSCCS-CCCTT-SCEECTTCCEEECCSSC--CC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCE
T ss_pred             ECcCCccc-cchHH-HhhccccCCEEECcCCC--CC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCc
Confidence            66555543 44555 777887 8888888885  22 4444444443  3777777651   11            1256


Q ss_pred             eEEEE-----------EcccccCCcceEEEEccccCCccccccc----------CCC----------eEEEcCC--CCCc
Q 047903          301 SKIVL-----------VEYQFPPRLTHLSFSNTELMEDPKSRAS----------SSR----------KLTCGSD--GFPN  347 (430)
Q Consensus       301 ~~L~l-----------~~~~lp~~L~~L~L~~~~l~~~~~~~~~----------~~~----------~~~~~~~--~~~~  347 (430)
                      +.|++           .+..+ ++|+.|+|++|.+...|.....          ...          .++....  .+++
T Consensus       676 ~~L~Ls~N~L~~lp~~~~~~l-~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~  754 (876)
T 4ecn_A          676 STVTLSYNEIQKFPTELFATG-SPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPY  754 (876)
T ss_dssp             EEEECCSSCCCSCCHHHHHTT-CCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTT
T ss_pred             CEEEccCCcCCccCHHHHccC-CCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCC
Confidence            66665           11244 6677777777766543310000          000          0111111  4555


Q ss_pred             ccEEEEeeCCCCCceEEcCCccccccEeEEee------cCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903          348 LKVLHLKSMLWLEEWTMGIGAMPKLECLIINP------CAYLKKMPEQPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       348 L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~------c~~l~~lp~~l~~l~~L~~L~l~~~~  405 (430)
                      |+.|++++ +.+..++...+.+++|+.|++++      |.....+|..+.++++|++|++++|.
T Consensus       755 L~~L~Ls~-N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~  817 (876)
T 4ecn_A          755 LSNMDVSY-NCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND  817 (876)
T ss_dssp             CCEEECCS-SCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred             cCEEEeCC-CCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC
Confidence            66666655 33444444444555566665544      32334455555555666666665555

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.88  E-value=1.9e-22  Score=191.70  Aligned_cols=260  Identities=16%  Similarity=0.164  Sum_probs=125.8

Q ss_pred             CCCeeEEEEeecCCCccccccc-cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEe
Q 047903          117 RKNVKRINVFEKQSDFAHLDDY-DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLD  195 (430)
Q Consensus       117 ~~~~r~L~l~~~~~~~~~~~~~-~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~  195 (430)
                      .++++++.+. ++....++.-. +++|+  +|++++|.++.++. ++.+++|++|++++|.++.+| .+ .++++|++|+
T Consensus        43 l~~L~~L~l~-~~~i~~~~~~~~~~~L~--~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~-~~l~~L~~L~  116 (347)
T 4fmz_A           43 LESITKLVVA-GEKVASIQGIEYLTNLE--YLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-AL-QNLTNLRELY  116 (347)
T ss_dssp             HTTCSEEECC-SSCCCCCTTGGGCTTCC--EEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GG-TTCTTCSEEE
T ss_pred             cccccEEEEe-CCccccchhhhhcCCcc--EEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HH-cCCCcCCEEE
Confidence            3455666666 44444343311 56666  66666666665555 566666666666666666554 34 6666666666


Q ss_pred             cCCCCccccchhhccCcccceeecCCcccCCCcC--ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccH
Q 047903          196 MPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPR--KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQ  273 (430)
Q Consensus       196 L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp--~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  273 (430)
                      +++|.+..+|. +..+++|++|++++|.....++  ..+++|+.|.+.++..  ..... ++.+++|++|+++++.  ..
T Consensus       117 l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~--~~~~~-~~~l~~L~~L~l~~n~--l~  190 (347)
T 4fmz_A          117 LNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKV--KDVTP-IANLTDLYSLSLNYNQ--IE  190 (347)
T ss_dssp             CTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCC--CCCGG-GGGCTTCSEEECTTSC--CC
T ss_pred             CcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCc--CCchh-hccCCCCCEEEccCCc--cc
Confidence            66666666555 5666666666666664333233  4455555554444332  22222 4455555555555553  11


Q ss_pred             HHHHHHhcCCCCCCEEEEecCCC--------CCCceEEEE---------EcccccCCcceEEEEccccCCcccccccCCC
Q 047903          274 SLLSQSLCTLTCLESLKLVSESK--------MPTLSKIVL---------VEYQFPPRLTHLSFSNTELMEDPKSRASSSR  336 (430)
Q Consensus       274 ~~~~~~l~~l~~L~~L~l~~~~~--------~~~L~~L~l---------~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~  336 (430)
                       .++. +..+++|+.|+++++.-        +++|+.|++         .+..+ ++|++|++++|.+...+        
T Consensus       191 -~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l-~~L~~L~l~~n~l~~~~--------  259 (347)
T 4fmz_A          191 -DISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANL-SQLTWLEIGTNQISDIN--------  259 (347)
T ss_dssp             -CCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTC-TTCCEEECCSSCCCCCG--------
T ss_pred             -cccc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcC-CCCCEEECCCCccCCCh--------
Confidence             1111 44445555555543110        233333333         12344 55555555555543321        


Q ss_pred             eEEEcCCCCCcccEEEEeeCCCCCceEEcCCccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903          337 KLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       337 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  405 (430)
                          ....+++|+.|+++++ .+..++ ....+++|+.|++++|......|..+..+++|++|++++|+
T Consensus       260 ----~~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          260 ----AVKDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH  322 (347)
T ss_dssp             ----GGTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred             ----hHhcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence                1234445555555542 233331 12334455555555543222233334444455555555444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.88  E-value=3e-22  Score=190.38  Aligned_cols=259  Identities=15%  Similarity=0.177  Sum_probs=186.6

Q ss_pred             CCCCeeEEEEeecCCCccccccc-cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEE
Q 047903          116 SRKNVKRINVFEKQSDFAHLDDY-DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTL  194 (430)
Q Consensus       116 ~~~~~r~L~l~~~~~~~~~~~~~-~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L  194 (430)
                      ..+++++|.+. ++.+..++.-. +++|+  +|++++|.++.++ .++.+++|++|++++|.++.+|. + .++++|++|
T Consensus        64 ~~~~L~~L~l~-~n~i~~~~~~~~l~~L~--~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~-~~l~~L~~L  137 (347)
T 4fmz_A           64 YLTNLEYLNLN-GNQITDISPLSNLVKLT--NLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-L-ANLTKMYSL  137 (347)
T ss_dssp             GCTTCCEEECC-SSCCCCCGGGTTCTTCC--EEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG-G-TTCTTCCEE
T ss_pred             hcCCccEEEcc-CCccccchhhhcCCcCC--EEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh-h-ccCCceeEE
Confidence            46778899988 66666555522 88888  8888888888765 58888899999999988888866 5 888888888


Q ss_pred             ecCCC-CccccchhhccCcccceeecCCcccCCCcC--ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccc
Q 047903          195 DMPFS-YIDHTADEFWKMNNLRHLNFGSITLPAHPR--KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSY  271 (430)
Q Consensus       195 ~L~~~-~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp--~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  271 (430)
                      ++++| .+..++. +..+++|++|++++|.+.. ++  ..+++|+.|.+.++..  ..... +..+++|+.|++.++.  
T Consensus       138 ~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~n~l--~~~~~-~~~l~~L~~L~l~~n~--  210 (347)
T 4fmz_A          138 NLGANHNLSDLSP-LSNMTGLNYLTVTESKVKD-VTPIANLTDLYSLSLNYNQI--EDISP-LASLTSLHYFTAYVNQ--  210 (347)
T ss_dssp             ECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECTTSCC--CCCGG-GGGCTTCCEEECCSSC--
T ss_pred             ECCCCCCcccccc-hhhCCCCcEEEecCCCcCC-chhhccCCCCCEEEccCCcc--ccccc-ccCCCccceeecccCC--
Confidence            88888 4444444 7888888888888888777 54  6677777776665543  22333 5666777777777665  


Q ss_pred             cHHHHHHHhcCCCCCCEEEEecCC--------CCCCceEEEE---------EcccccCCcceEEEEccccCCcccccccC
Q 047903          272 YQSLLSQSLCTLTCLESLKLVSES--------KMPTLSKIVL---------VEYQFPPRLTHLSFSNTELMEDPKSRASS  334 (430)
Q Consensus       272 ~~~~~~~~l~~l~~L~~L~l~~~~--------~~~~L~~L~l---------~~~~lp~~L~~L~L~~~~l~~~~~~~~~~  334 (430)
                      .....+  +..+++|+.|+++++.        .+++|+.|++         .+..+ ++|++|++++|.+...+      
T Consensus       211 l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l-~~L~~L~l~~n~l~~~~------  281 (347)
T 4fmz_A          211 ITDITP--VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDL-TKLKMLNVGSNQISDIS------  281 (347)
T ss_dssp             CCCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTC-TTCCEEECCSSCCCCCG------
T ss_pred             CCCCch--hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcC-CCcCEEEccCCccCCCh------
Confidence            111111  5566677777776511        1456666666         45677 99999999999875532      


Q ss_pred             CCeEEEcCCCCCcccEEEEeeCCCCCce-EEcCCccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903          335 SRKLTCGSDGFPNLKVLHLKSMLWLEEW-TMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       335 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  405 (430)
                            ....+++|+.|+++++. +... +...+.+++|+.|++++|+ ++.++. +..+++|++|++++|+
T Consensus       282 ------~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          282 ------VLNNLSQLNSLFLNNNQ-LGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQV  344 (347)
T ss_dssp             ------GGGGCTTCSEEECCSSC-CCGGGHHHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred             ------hhcCCCCCCEEECcCCc-CCCcChhHhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence                  23578999999999854 4443 2334568999999999986 666655 8889999999999997

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.88  E-value=1.2e-22  Score=193.72  Aligned_cols=262  Identities=16%  Similarity=0.109  Sum_probs=196.3

Q ss_pred             EEEeecCCCccccccccCcceEEEEEecCCccccccc-ccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCc
Q 047903          123 INVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLS-GIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYI  201 (430)
Q Consensus       123 L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l  201 (430)
                      .... ++....+|..+.++++  +|++++|.++.+|. .++++++|++|++++|.++.+++..|+++++|++|++++|.+
T Consensus        36 c~~~-~~~l~~iP~~~~~~L~--~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  112 (353)
T 2z80_A           36 CKGS-SGSLNSIPSGLTEAVK--SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL  112 (353)
T ss_dssp             EECC-STTCSSCCTTCCTTCC--EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             eeCC-CCCcccccccccccCc--EEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence            4444 6666678887788999  99999999998875 789999999999999999988655449999999999999999


Q ss_pred             cccchh-hccCcccceeecCCcccCCCcC-----ccCCCCcccceeecCC-CCcchhhhcCCCCCCceEEEEccccccHH
Q 047903          202 DHTADE-FWKMNNLRHLNFGSITLPAHPR-----KYCRSLENLNFISALH-PCCCTEDILGRLPNLRNLRIWGDLSYYQS  274 (430)
Q Consensus       202 ~~lp~~-i~~L~~L~~L~l~~~~~~~~lp-----~~l~~L~~L~~~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  274 (430)
                      +.+|.. ++++++|++|++++|.+.. +|     ..+++|+.|.+.++.. ....+.. ++.+++|++|+++++.  ...
T Consensus       113 ~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~l~~L~~L~l~~n~--l~~  188 (353)
T 2z80_A          113 SNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKD-FAGLTFLEELEIDASD--LQS  188 (353)
T ss_dssp             SSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTTT-TTTCCEEEEEEEEETT--CCE
T ss_pred             CcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccccCHHH-ccCCCCCCEEECCCCC--cCc
Confidence            999877 8899999999999999887 76     3566777777776642 2233445 8889999999999986  444


Q ss_pred             HHHHHhcCCCCCCEEEEecCCCCCCceEEEE-EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEE
Q 047903          275 LLSQSLCTLTCLESLKLVSESKMPTLSKIVL-VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHL  353 (430)
Q Consensus       275 ~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  353 (430)
                      ..+..+..+++|+.|++++    ..+..+.- ++..+ ++|+.|++++|.+...+.      ..+ ......+.++.+++
T Consensus       189 ~~~~~l~~l~~L~~L~l~~----n~l~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~------~~l-~~~~~~~~l~~l~L  256 (353)
T 2z80_A          189 YEPKSLKSIQNVSHLILHM----KQHILLLEIFVDVT-SSVECLELRDTDLDTFHF------SEL-STGETNSLIKKFTF  256 (353)
T ss_dssp             ECTTTTTTCSEEEEEEEEC----SCSTTHHHHHHHHT-TTEEEEEEESCBCTTCCC------C-------CCCCCCEEEE
T ss_pred             cCHHHHhccccCCeecCCC----Cccccchhhhhhhc-ccccEEECCCCccccccc------ccc-ccccccchhhcccc
Confidence            4566788888999999985    22332211 23346 899999999998866431      111 11234567888888


Q ss_pred             eeCCCCCc-----eEEcCCccccccEeEEeecCCCCcCCCCC-CCCCCCCEEEEecCh
Q 047903          354 KSMLWLEE-----WTMGIGAMPKLECLIINPCAYLKKMPEQP-WCIKSLNKFNCWWPQ  405 (430)
Q Consensus       354 ~~~~~l~~-----~~~~~~~~~~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~~~  405 (430)
                      .++ .+..     ++...+.+++|+.|++++| .++.+|..+ .++++|++|++++|+
T Consensus       257 ~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          257 RNV-KITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             ESC-BCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccc-cccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence            863 2322     2323356899999999997 578899875 899999999999876

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.88  E-value=5.2e-22  Score=199.19  Aligned_cols=103  Identities=21%  Similarity=0.256  Sum_probs=76.9

Q ss_pred             CCeeEEEEeecCCCcccc-ccc--cCcceEEEEEecCCccccc-ccccccccCCceeecCCCCCcccChHhhhcCCCccE
Q 047903          118 KNVKRINVFEKQSDFAHL-DDY--DSHMHSLVLDLGSLVLIHY-LSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYT  193 (430)
Q Consensus       118 ~~~r~L~l~~~~~~~~~~-~~~--~~~L~~L~L~l~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~  193 (430)
                      +++++|.+. ++.+..++ +.+  +++|+  +|++++|.++.+ |..|+++++|++|++++|+++.+|..   .+++|++
T Consensus        21 ~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~--~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~   94 (520)
T 2z7x_B           21 QKTTILNIS-QNYISELWTSDILSLSKLR--ILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH---PTVNLKH   94 (520)
T ss_dssp             TTCSEEECC-SSCCCCCCHHHHTTCTTCC--EEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC---CCCCCSE
T ss_pred             ccccEEECC-CCcccccChhhcccccccc--EEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc---ccCCccE
Confidence            678888888 66665554 334  77788  888888887755 56788888888888888888877763   6788888


Q ss_pred             EecCCCCccc--cchhhccCcccceeecCCcccCC
Q 047903          194 LDMPFSYIDH--TADEFWKMNNLRHLNFGSITLPA  226 (430)
Q Consensus       194 L~L~~~~l~~--lp~~i~~L~~L~~L~l~~~~~~~  226 (430)
                      |++++|.++.  +|..++++++|++|++++|.+.+
T Consensus        95 L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~  129 (520)
T 2z7x_B           95 LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK  129 (520)
T ss_dssp             EECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred             EeccCCccccccchhhhccCCcceEEEecCcccch
Confidence            8888887765  46678888888888888777654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.87  E-value=7.7e-22  Score=199.81  Aligned_cols=120  Identities=18%  Similarity=0.149  Sum_probs=91.0

Q ss_pred             CCCeeEEEEeecCCCcccc-ccc--cCcceEEEEEecCCccccc-ccccccccCCceeecCCCCCcccChHhhhcCCCcc
Q 047903          117 RKNVKRINVFEKQSDFAHL-DDY--DSHMHSLVLDLGSLVLIHY-LSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLY  192 (430)
Q Consensus       117 ~~~~r~L~l~~~~~~~~~~-~~~--~~~L~~L~L~l~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~  192 (430)
                      ++++++|.+. ++.+..++ +.+  +++|+  +|++++|.++.+ |..|+++++|++|++++|.++.+|..   .+++|+
T Consensus        51 ~~~L~~L~Ls-~N~i~~~~~~~~~~l~~L~--~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~  124 (562)
T 3a79_B           51 PPRTKALSLS-QNSISELRMPDISFLSELR--VLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC---PMASLR  124 (562)
T ss_dssp             CTTCCEEECC-SSCCCCCCGGGTTTCTTCC--EEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC---CCTTCS
T ss_pred             CCCcCEEECC-CCCccccChhhhccCCCcc--EEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc---ccccCC
Confidence            4678888888 66666555 344  77888  888888888866 56788888899999999888888864   788899


Q ss_pred             EEecCCCCccccc--hhhccCcccceeecCCcccCCCcC-ccCCCC--cccceeec
Q 047903          193 TLDMPFSYIDHTA--DEFWKMNNLRHLNFGSITLPAHPR-KYCRSL--ENLNFISA  243 (430)
Q Consensus       193 ~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~lp-~~l~~L--~~L~~~~~  243 (430)
                      +|++++|.++.+|  ..++++++|++|++++|.+.. .. ..+++|  +.|.+..+
T Consensus       125 ~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~L~L~~L~L~~n  179 (562)
T 3a79_B          125 HLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LDLLPVAHLHLSCILLDLV  179 (562)
T ss_dssp             EEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-TTTGGGTTSCEEEEEEEES
T ss_pred             EEECCCCCccccCchHhhcccCcccEEecCCCcccc-CchhhhhhceeeEEEeecc
Confidence            9999988888764  678888999999998888776 33 444444  55544443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.87  E-value=7.1e-22  Score=201.36  Aligned_cols=240  Identities=20%  Similarity=0.198  Sum_probs=166.1

Q ss_pred             CCCCeeEEEEeecCCCccccc-cc--cCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCc
Q 047903          116 SRKNVKRINVFEKQSDFAHLD-DY--DSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNL  191 (430)
Q Consensus       116 ~~~~~r~L~l~~~~~~~~~~~-~~--~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L  191 (430)
                      ...+++.|.+. ++.+..++. .+  +++|+  +|++++|.++.+| ..|+++++|++|++++|.++.+|..+|+++++|
T Consensus        73 ~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~--~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L  149 (597)
T 3oja_B           73 SFRQVELLNLN-DLQIEEIDTYAFAYAHTIQ--KLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL  149 (597)
T ss_dssp             HCCCCSEEECT-TSCCCEECTTTTTTCTTCC--EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cCCCCcEEECC-CCCCCCCChHHhcCCCCCC--EEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCC
Confidence            35678888888 666665554 44  77888  8888998888766 457888999999999998888888777889999


Q ss_pred             cEEecCCCCccccch-hhccCcccceeecCCcccCCCcC-ccCCCCcccceeecCCC-----------------------
Q 047903          192 YTLDMPFSYIDHTAD-EFWKMNNLRHLNFGSITLPAHPR-KYCRSLENLNFISALHP-----------------------  246 (430)
Q Consensus       192 ~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~lp-~~l~~L~~L~~~~~~~~-----------------------  246 (430)
                      ++|++++|.+..++. .++++++|++|++++|.+.+ +| +.+++|+.|.+.++...                       
T Consensus       150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~  228 (597)
T 3oja_B          150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG  228 (597)
T ss_dssp             CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEEC
T ss_pred             CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cChhhhhhhhhhhcccCccccccCCchhheeeccCCccccccc
Confidence            999999988887755 48888899999999888877 66 55666555443322110                       


Q ss_pred             ---------------CcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEEEccccc
Q 047903          247 ---------------CCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFP  311 (430)
Q Consensus       247 ---------------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp  311 (430)
                                     ...+.. ++.+++|+.|++++|.  .....+..+..+++|+.|++++    ..+..++..+..+ 
T Consensus       229 ~~~~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~Ls~----N~l~~l~~~~~~l-  300 (597)
T 3oja_B          229 PVNVELTILKLQHNNLTDTAW-LLNYPGLVEVDLSYNE--LEKIMYHPFVKMQRLERLYISN----NRLVALNLYGQPI-  300 (597)
T ss_dssp             SCCSCCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSC--CCEEESGGGTTCSSCCEEECTT----SCCCEEECSSSCC-
T ss_pred             ccCCCCCEEECCCCCCCCChh-hccCCCCCEEECCCCc--cCCCCHHHhcCccCCCEEECCC----CCCCCCCcccccC-
Confidence                           011233 4455555555555554  3333344455555555555552    3444444344567 


Q ss_pred             CCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEcCCccccccEeEEeecC
Q 047903          312 PRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCA  381 (430)
Q Consensus       312 ~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~  381 (430)
                      ++|+.|+|++|.+...|           .....+++|+.|++++ +.+..++  .+.+++|+.|++++|+
T Consensus       301 ~~L~~L~Ls~N~l~~i~-----------~~~~~l~~L~~L~L~~-N~l~~~~--~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          301 PTLKVLDLSHNHLLHVE-----------RNQPQFDRLENLYLDH-NSIVTLK--LSTHHTLKNLTLSHND  356 (597)
T ss_dssp             TTCCEEECCSSCCCCCG-----------GGHHHHTTCSEEECCS-SCCCCCC--CCTTCCCSEEECCSSC
T ss_pred             CCCcEEECCCCCCCccC-----------cccccCCCCCEEECCC-CCCCCcC--hhhcCCCCEEEeeCCC
Confidence            88999999999876433           1234689999999998 4566554  5679999999999987

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.87  E-value=1.4e-21  Score=193.31  Aligned_cols=268  Identities=19%  Similarity=0.208  Sum_probs=186.0

Q ss_pred             CCCeeEEEEeecCCCccccccc-cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEe
Q 047903          117 RKNVKRINVFEKQSDFAHLDDY-DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLD  195 (430)
Q Consensus       117 ~~~~r~L~l~~~~~~~~~~~~~-~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~  195 (430)
                      ..+++.|.+. ++....++.-. +++|+  +|++++|.++.+|. ++++++|++|++++|.++.+++ + +++++|++|+
T Consensus        45 l~~l~~L~l~-~~~i~~l~~~~~l~~L~--~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~-~~l~~L~~L~  118 (466)
T 1o6v_A           45 LDQVTTLQAD-RLGIKSIDGVEYLNNLT--QINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-L-ANLTNLTGLT  118 (466)
T ss_dssp             HHTCCEEECC-SSCCCCCTTGGGCTTCC--EEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-G-TTCTTCCEEE
T ss_pred             hccccEEecC-CCCCccCcchhhhcCCC--EEECCCCccCCchh-hhccccCCEEECCCCccccChh-h-cCCCCCCEEE
Confidence            3578899988 76666565423 88999  99999999998877 8999999999999999998876 6 9999999999


Q ss_pred             cCCCCccccchhhccCcccceeecCCcccCCCcC--ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccH
Q 047903          196 MPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPR--KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQ  273 (430)
Q Consensus       196 L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp--~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  273 (430)
                      +++|.++.+|. ++++++|++|++++|.+.. +|  +.+++|+.|.+...   ...... ++.+++|+.|+++++.-  .
T Consensus       119 L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~~---~~~~~~-~~~l~~L~~L~l~~n~l--~  190 (466)
T 1o6v_A          119 LFNNQITDIDP-LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFGNQ---VTDLKP-LANLTTLERLDISSNKV--S  190 (466)
T ss_dssp             CCSSCCCCCGG-GTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEEES---CCCCGG-GTTCTTCCEEECCSSCC--C
T ss_pred             CCCCCCCCChH-HcCCCCCCEEECCCCccCC-ChhhccCCcccEeecCCc---ccCchh-hccCCCCCEEECcCCcC--C
Confidence            99999998886 8999999999999999888 77  77777887776432   223345 77788888888887751  1


Q ss_pred             HHHHHHhcCCCCCCEEEEecCC---C-----CCCceEEEE---------EcccccCCcceEEEEccccCCccc-ccccCC
Q 047903          274 SLLSQSLCTLTCLESLKLVSES---K-----MPTLSKIVL---------VEYQFPPRLTHLSFSNTELMEDPK-SRASSS  335 (430)
Q Consensus       274 ~~~~~~l~~l~~L~~L~l~~~~---~-----~~~L~~L~l---------~~~~lp~~L~~L~L~~~~l~~~~~-~~~~~~  335 (430)
                      . + ..+..+++|+.|+++++.   .     +++|+.|++         .+..+ ++|+.|++++|.+...+. ......
T Consensus       191 ~-~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~l~~L  267 (466)
T 1o6v_A          191 D-I-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASL-TNLTDLDLANNQISNLAPLSGLTKL  267 (466)
T ss_dssp             C-C-GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGC-TTCSEEECCSSCCCCCGGGTTCTTC
T ss_pred             C-C-hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcC-CCCCEEECCCCccccchhhhcCCCC
Confidence            1 1 235667777777777521   0     456666665         33445 677777777776654321 000000


Q ss_pred             CeEE---------EcCCCCCcccEEEEeeCCCCCceEEcCCccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903          336 RKLT---------CGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       336 ~~~~---------~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  405 (430)
                      ..+.         .....+++|+.|++++ +.+..++. .+.+++|+.|++++|. +..++. +..+++|++|++++|+
T Consensus       268 ~~L~l~~n~l~~~~~~~~l~~L~~L~L~~-n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~  342 (466)
T 1o6v_A          268 TELKLGANQISNISPLAGLTALTNLELNE-NQLEDISP-ISNLKNLTYLTLYFNN-ISDISP-VSSLTKLQRLFFYNNK  342 (466)
T ss_dssp             SEEECCSSCCCCCGGGTTCTTCSEEECCS-SCCSCCGG-GGGCTTCSEEECCSSC-CSCCGG-GGGCTTCCEEECCSSC
T ss_pred             CEEECCCCccCccccccCCCccCeEEcCC-CcccCchh-hcCCCCCCEEECcCCc-CCCchh-hccCccCCEeECCCCc
Confidence            0000         0134566777777776 33444432 3567788888888774 555443 6678888888888876

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.87  E-value=6.9e-22  Score=199.58  Aligned_cols=281  Identities=18%  Similarity=0.143  Sum_probs=188.0

Q ss_pred             CCCeeEEEEeecCCCccc-cccc--cCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCcc
Q 047903          117 RKNVKRINVFEKQSDFAH-LDDY--DSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLY  192 (430)
Q Consensus       117 ~~~~r~L~l~~~~~~~~~-~~~~--~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~  192 (430)
                      +..+++|.+. ++.+..+ +..+  +++|+  +|++++|.++.++ ..|+++++|++|++++|.++.+|+..|+++++|+
T Consensus        25 ~~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~--~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  101 (549)
T 2z81_A           25 TAAMKSLDLS-FNKITYIGHGDLRACANLQ--VLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLK  101 (549)
T ss_dssp             CTTCCEEECC-SSCCCEECSSTTSSCTTCC--EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCC
T ss_pred             CCCccEEECc-CCccCccChhhhhcCCccc--EEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCc
Confidence            4679999999 6666555 3445  88899  9999999998666 6899999999999999999998877449999999


Q ss_pred             EEecCCCCccc--cchhhccCcccceeecCCcccCCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEE
Q 047903          193 TLDMPFSYIDH--TADEFWKMNNLRHLNFGSITLPAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIW  266 (430)
Q Consensus       193 ~L~L~~~~l~~--lp~~i~~L~~L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~  266 (430)
                      +|++++|.++.  +|..++++++|++|++++|...+.+|    ..+++|+.|.+.++......+.. ++.+++|++|++.
T Consensus       102 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~  180 (549)
T 2z81_A          102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLH  180 (549)
T ss_dssp             EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEE
T ss_pred             EEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceEecc
Confidence            99999998885  46678999999999999998544466    55666777777666654455666 7888888888888


Q ss_pred             ccccccHHHHHHHhcCCCCCCEEEEecC---C----------CCCCceEEEE---------------Ecccc--------
Q 047903          267 GDLSYYQSLLSQSLCTLTCLESLKLVSE---S----------KMPTLSKIVL---------------VEYQF--------  310 (430)
Q Consensus       267 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~---~----------~~~~L~~L~l---------------~~~~l--------  310 (430)
                      .+.  ........+..+++|+.|+++++   +          .+++|+.|.+               .+..+        
T Consensus       181 ~n~--~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l  258 (549)
T 2z81_A          181 LSE--SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF  258 (549)
T ss_dssp             CSB--STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEE
T ss_pred             cCc--ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccc
Confidence            775  22222223345677777777651   1          0233444433               00011        


Q ss_pred             --------------------------------------------------cCCcceEEEEccccCCcccc---cccCCCe
Q 047903          311 --------------------------------------------------PPRLTHLSFSNTELMEDPKS---RASSSRK  337 (430)
Q Consensus       311 --------------------------------------------------p~~L~~L~L~~~~l~~~~~~---~~~~~~~  337 (430)
                                                                        .++|+.|++++|.+...|..   .....+.
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~  338 (549)
T 2z81_A          259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEF  338 (549)
T ss_dssp             ESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCE
T ss_pred             ccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccE
Confidence                                                              02344444444444333210   0000000


Q ss_pred             EE--------------EcCCCCCcccEEEEeeCCCCCceEE---cCCccccccEeEEeecCCCCcCCCCCCCCCCCCEEE
Q 047903          338 LT--------------CGSDGFPNLKVLHLKSMLWLEEWTM---GIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFN  400 (430)
Q Consensus       338 ~~--------------~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~  400 (430)
                      +.              .....+++|+.|++++ +.+..++.   ..+.+++|++|++++| .++.+|..+..+++|++|+
T Consensus       339 L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~  416 (549)
T 2z81_A          339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ-NHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLN  416 (549)
T ss_dssp             EECCSSCCCHHHHHHHTCTTSSTTCCEEECTT-SCCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEE
T ss_pred             EEccCCccccccccchhhhhccccCcEEEccC-CcccccccchhhhhcCCCCCEEECCCC-CCccCChhhcccccccEEE
Confidence            00              0134567788888877 34555432   2456888888888887 5778888888888888888


Q ss_pred             EecCh
Q 047903          401 CWWPQ  405 (430)
Q Consensus       401 l~~~~  405 (430)
                      +++|.
T Consensus       417 Ls~N~  421 (549)
T 2z81_A          417 LSSTG  421 (549)
T ss_dssp             CTTSC
T ss_pred             CCCCC
Confidence            88876

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.87  E-value=1.8e-22  Score=199.12  Aligned_cols=259  Identities=17%  Similarity=0.174  Sum_probs=172.5

Q ss_pred             CCCCCCCCCeeEEEEeecCCCc-ccc-ccc--cCcceEEEEEecCCccccc-ccccccccCCceeecCCCCCcc-cChH-
Q 047903          111 DPKGKSRKNVKRINVFEKQSDF-AHL-DDY--DSHMHSLVLDLGSLVLIHY-LSGIENLFLLRYLKLNIPSLKS-LPSP-  183 (430)
Q Consensus       111 ~~~~~~~~~~r~L~l~~~~~~~-~~~-~~~--~~~L~~L~L~l~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~-lp~~-  183 (430)
                      ...+....++++|.+. ++... .++ +.+  +++|+  +|++++|.++.+ |..|+++++|++|++++|.++. +|.. 
T Consensus        47 ~~~~~~l~~L~~L~L~-~n~~~~~i~~~~~~~l~~L~--~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  123 (455)
T 3v47_A           47 ETSFSRLQDLQFLKVE-QQTPGLVIRNNTFRGLSSLI--ILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGN  123 (455)
T ss_dssp             TTTTSSCTTCCEEECC-CCSTTCEECTTTTTTCTTCC--EEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSS
T ss_pred             hhHhccCccccEEECc-CCcccceECcccccccccCC--EEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcc
Confidence            3344567789999998 65543 343 334  78888  999999998855 6788999999999999999885 3333 


Q ss_pred             hhhcCCCccEEecCCCCcccc-chh-hccCcccceeecCCcccCCCcCccC-----------------------------
Q 047903          184 LLSNLLNLYTLDMPFSYIDHT-ADE-FWKMNNLRHLNFGSITLPAHPRKYC-----------------------------  232 (430)
Q Consensus       184 i~~~L~~L~~L~L~~~~l~~l-p~~-i~~L~~L~~L~l~~~~~~~~lp~~l-----------------------------  232 (430)
                      .|+++++|++|++++|.+..+ |.. ++++++|++|++++|.+.+..|..+                             
T Consensus       124 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~  203 (455)
T 3v47_A          124 FFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWE  203 (455)
T ss_dssp             TTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHH
T ss_pred             cccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccc
Confidence            238999999999999988876 554 7889999999999998877323211                             


Q ss_pred             --------CCCcccceeecCCCCcchhhhcC---------------------------------------CCCCCceEEE
Q 047903          233 --------RSLENLNFISALHPCCCTEDILG---------------------------------------RLPNLRNLRI  265 (430)
Q Consensus       233 --------~~L~~L~~~~~~~~~~~~~~~l~---------------------------------------~l~~L~~L~l  265 (430)
                              ++|+.|.+.++......+.. +.                                       ..++|+.|++
T Consensus       204 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  282 (455)
T 3v47_A          204 KCGNPFKNTSITTLDLSGNGFKESMAKR-FFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDL  282 (455)
T ss_dssp             HHCCTTTTCEEEEEECTTSCCCHHHHHH-HHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEEC
T ss_pred             ccccccccceeeeEecCCCcccccchhh-hhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEe
Confidence                    33444444333221111111 10                                       1145666666


Q ss_pred             EccccccHHHHHHHhcCCCCCCEEEEecCC----------CCCCceEEEE-----------EcccccCCcceEEEEcccc
Q 047903          266 WGDLSYYQSLLSQSLCTLTCLESLKLVSES----------KMPTLSKIVL-----------VEYQFPPRLTHLSFSNTEL  324 (430)
Q Consensus       266 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~----------~~~~L~~L~l-----------~~~~lp~~L~~L~L~~~~l  324 (430)
                      +++.  .....+..+..+++|+.|+++++.          .+++|+.|++           ++..+ ++|++|++++|.+
T Consensus       283 ~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l  359 (455)
T 3v47_A          283 SKSK--IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENL-DKLEVLDLSYNHI  359 (455)
T ss_dssp             CSSC--CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTC-TTCCEEECCSSCC
T ss_pred             cCcc--ccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCc-ccCCEEECCCCcc
Confidence            6665  333444556667777777776511          0345566555           34566 7888888888876


Q ss_pred             CCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEcC-CccccccEeEEeecCCCCcCC
Q 047903          325 MEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGI-GAMPKLECLIINPCAYLKKMP  387 (430)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~c~~l~~lp  387 (430)
                      ...+          +.....+++|++|++++ +.+..++... +.+++|+.|++++|+--...|
T Consensus       360 ~~~~----------~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          360 RALG----------DQSFLGLPNLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CEEC----------TTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cccC----------hhhccccccccEEECCC-CccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            4321          11245789999999998 5677776543 678999999999987544444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.87  E-value=6.9e-22  Score=202.00  Aligned_cols=148  Identities=16%  Similarity=0.090  Sum_probs=110.2

Q ss_pred             CCCCeeEEEEeecCCCccc-cccc--cCcceEEEEEecCCccccc-ccccccccCCceeecCCCCCccc-ChHhhhcCCC
Q 047903          116 SRKNVKRINVFEKQSDFAH-LDDY--DSHMHSLVLDLGSLVLIHY-LSGIENLFLLRYLKLNIPSLKSL-PSPLLSNLLN  190 (430)
Q Consensus       116 ~~~~~r~L~l~~~~~~~~~-~~~~--~~~L~~L~L~l~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~l-p~~i~~~L~~  190 (430)
                      .+..+++|.+. ++.+..+ +..+  +++|+  +|++++|.+..+ |..|+++++|++|++++|.++.+ |..+ +++++
T Consensus        31 l~~~l~~L~Ls-~n~i~~~~~~~~~~l~~L~--~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~  106 (606)
T 3t6q_A           31 LPNSTECLEFS-FNVLPTIQNTTFSRLINLT--FLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETAL-SGPKA  106 (606)
T ss_dssp             SCTTCCEEECT-TCCCSEECTTTSTTCTTCS--EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTT-SSCTT
T ss_pred             CCCcCcEEEcc-CCccCcCChhHhccCccce--EEECCCCccceeChhhccCccccCeeeCCCCcccccChhhh-ccccc
Confidence            45678888888 6666655 3444  77888  888888888755 57788888888888888888876 4445 88888


Q ss_pred             ccEEecCCCCcccc-chhhccCcccceeecCCcccCCCc--C--ccCCCCcccceeecCCCCcchhhhcCCCCCCc--eE
Q 047903          191 LYTLDMPFSYIDHT-ADEFWKMNNLRHLNFGSITLPAHP--R--KYCRSLENLNFISALHPCCCTEDILGRLPNLR--NL  263 (430)
Q Consensus       191 L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~l--p--~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~--~L  263 (430)
                      |++|++++|.++.+ |..++++++|++|++++|.+.+ +  |  ..+++|+.|.+.++......+.. ++.+++|+  +|
T Consensus       107 L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~l~L  184 (606)
T 3t6q_A          107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHYLSKED-MSSLQQATNLSL  184 (606)
T ss_dssp             CCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCC-CCCCTTCCCTTCCEEECCSSCCCEECHHH-HHTTTTCCSEEE
T ss_pred             ccEeeccccCcccCCcchhccCCcccEEECCCCcccc-cCcccccCCcccCEEEcccCcccccChhh-hhhhcccceeEE
Confidence            88888888888877 4558888888888888888887 4  4  44677777776666544444555 77888888  66


Q ss_pred             EEEccc
Q 047903          264 RIWGDL  269 (430)
Q Consensus       264 ~l~~~~  269 (430)
                      ++.++.
T Consensus       185 ~l~~n~  190 (606)
T 3t6q_A          185 NLNGND  190 (606)
T ss_dssp             ECTTCC
T ss_pred             ecCCCc
Confidence            666664

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.87  E-value=1.3e-22  Score=212.68  Aligned_cols=245  Identities=17%  Similarity=0.143  Sum_probs=157.7

Q ss_pred             EEEecCCccc-ccccccccc-cCCceeecCCCCCc-ccChHhhhcCCCccEEecCCCCcc-ccchh-hccCcccceeecC
Q 047903          146 VLDLGSLVLI-HYLSGIENL-FLLRYLKLNIPSLK-SLPSPLLSNLLNLYTLDMPFSYID-HTADE-FWKMNNLRHLNFG  220 (430)
Q Consensus       146 ~L~l~~~~l~-~lp~~~~~l-~~L~~L~L~~~~i~-~lp~~i~~~L~~L~~L~L~~~~l~-~lp~~-i~~L~~L~~L~l~  220 (430)
                      +|++++|.++ .+|..+..+ ++|++|++++|.++ .+|..+ +++++|++|++++|.+. .+|.. ++++++|++|+++
T Consensus       273 ~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls  351 (768)
T 3rgz_A          273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF-GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS  351 (768)
T ss_dssp             EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG-GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECC
T ss_pred             EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHH-hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCc
Confidence            5555555555 555555543 66777777766666 445555 77777777777777665 66655 6667777777777


Q ss_pred             CcccCCCcC---ccCC-CCcccceeecCCCCcchhhhcCC--CCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecC
Q 047903          221 SITLPAHPR---KYCR-SLENLNFISALHPCCCTEDILGR--LPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSE  294 (430)
Q Consensus       221 ~~~~~~~lp---~~l~-~L~~L~~~~~~~~~~~~~~~l~~--l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  294 (430)
                      +|.+.+.+|   ..++ +|+.|.+..+......+.. +..  +++|++|++.+|.  .....+..+..+++|+.|+++++
T Consensus       352 ~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~-~~~~~~~~L~~L~L~~n~--l~~~~p~~l~~l~~L~~L~Ls~N  428 (768)
T 3rgz_A          352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN-LCQNPKNTLQELYLQNNG--FTGKIPPTLSNCSELVSLHLSFN  428 (768)
T ss_dssp             SSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTT-TTCSTTCCCCEEECCSSE--EEEECCGGGGGCTTCCEEECCSS
T ss_pred             CCccCccccHHHHhhhcCCcEEEccCCCcCCCcChh-hhhcccCCccEEECCCCc--cccccCHHHhcCCCCCEEECcCC
Confidence            776664455   2333 5555555444322223333 333  5666677666665  33445556666677777776651


Q ss_pred             ---CC-------CCCceEEEE-----------EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEE
Q 047903          295 ---SK-------MPTLSKIVL-----------VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHL  353 (430)
Q Consensus       295 ---~~-------~~~L~~L~l-----------~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  353 (430)
                         +.       +++|+.|++           .+..+ ++|++|++++|.+...          .+.....+++|+.|++
T Consensus       429 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~----------~p~~l~~l~~L~~L~L  497 (768)
T 3rgz_A          429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV-KTLETLILDFNDLTGE----------IPSGLSNCTNLNWISL  497 (768)
T ss_dssp             EEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-TTCCEEECCSSCCCSC----------CCGGGGGCTTCCEEEC
T ss_pred             cccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCC-CCceEEEecCCcccCc----------CCHHHhcCCCCCEEEc
Confidence               11       345555555           23455 7788888888876432          1223456889999999


Q ss_pred             eeCCCCCceEEcCCccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903          354 KSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       354 ~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  405 (430)
                      +++.-...++...+.+++|+.|++++|.....+|..+..+++|+.|++++|+
T Consensus       498 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  549 (768)
T 3rgz_A          498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL  549 (768)
T ss_dssp             CSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred             cCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence            9855444666667789999999999987667899999999999999999876

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.87  E-value=3.8e-23  Score=193.61  Aligned_cols=241  Identities=15%  Similarity=0.158  Sum_probs=142.3

Q ss_pred             CCeeEEEEeecCCCc---cccccc--cCcceEEEEEecC-Cccc-ccccccccccCCceeecCCCCCc-ccChHhhhcCC
Q 047903          118 KNVKRINVFEKQSDF---AHLDDY--DSHMHSLVLDLGS-LVLI-HYLSGIENLFLLRYLKLNIPSLK-SLPSPLLSNLL  189 (430)
Q Consensus       118 ~~~r~L~l~~~~~~~---~~~~~~--~~~L~~L~L~l~~-~~l~-~lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~~~L~  189 (430)
                      .+++.|.+. ++...   .++..+  +++|+  +|++++ |.+. .+|..++++++|++|++++|.++ .+|..+ ++++
T Consensus        50 ~~l~~L~L~-~~~l~~~~~~~~~l~~l~~L~--~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~  125 (313)
T 1ogq_A           50 YRVNNLDLS-GLNLPKPYPIPSSLANLPYLN--FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL-SQIK  125 (313)
T ss_dssp             CCEEEEEEE-CCCCSSCEECCGGGGGCTTCS--EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG-GGCT
T ss_pred             ceEEEEECC-CCCccCCcccChhHhCCCCCC--eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH-hCCC
Confidence            456666666 44433   344444  56666  666663 5554 55566666666666666666665 455555 6666


Q ss_pred             CccEEecCCCCcc-ccchhhccCcccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCC-CCceEEEEc
Q 047903          190 NLYTLDMPFSYID-HTADEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLP-NLRNLRIWG  267 (430)
Q Consensus       190 ~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~  267 (430)
                      +|++|++++|.+. .+|..++++++|++|++++|.+.+                     ..+.. ++.++ +|+.|++++
T Consensus       126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~---------------------~~p~~-l~~l~~~L~~L~L~~  183 (313)
T 1ogq_A          126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG---------------------AIPDS-YGSFSKLFTSMTISR  183 (313)
T ss_dssp             TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEE---------------------ECCGG-GGCCCTTCCEEECCS
T ss_pred             CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccC---------------------cCCHH-HhhhhhcCcEEECcC
Confidence            6666666666555 456566666666666666666553                     23334 55555 666666666


Q ss_pred             cccccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEE-EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCC
Q 047903          268 DLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVL-VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFP  346 (430)
Q Consensus       268 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~  346 (430)
                      +.  .....+..+..++ |+.|++++    ..+....- .+..+ ++|+.|++++|.+...+           .....++
T Consensus       184 N~--l~~~~~~~~~~l~-L~~L~Ls~----N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~-----------~~~~~l~  244 (313)
T 1ogq_A          184 NR--LTGKIPPTFANLN-LAFVDLSR----NMLEGDASVLFGSD-KNTQKIHLAKNSLAFDL-----------GKVGLSK  244 (313)
T ss_dssp             SE--EEEECCGGGGGCC-CSEEECCS----SEEEECCGGGCCTT-SCCSEEECCSSEECCBG-----------GGCCCCT
T ss_pred             Ce--eeccCChHHhCCc-ccEEECcC----CcccCcCCHHHhcC-CCCCEEECCCCceeeec-----------CcccccC
Confidence            54  3333444455554 66666653    12221100 34556 77777888777765322           0124567


Q ss_pred             cccEEEEeeCCCCC-ceEEcCCccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903          347 NLKVLHLKSMLWLE-EWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       347 ~L~~L~l~~~~~l~-~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  405 (430)
                      +|++|+++++ .+. .++...+.+++|+.|++++|.....+|.. ..+++|+.+++++++
T Consensus       245 ~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          245 NLNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             TCCEEECCSS-CCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             CCCEEECcCC-cccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence            7888888773 343 44444566788888888887644567764 677888888887776

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.86  E-value=2.6e-22  Score=205.86  Aligned_cols=265  Identities=17%  Similarity=0.204  Sum_probs=211.1

Q ss_pred             CCCCeeEEEEeecCC-Cc--cccccc--c------CcceEEEEEecCCccccccc--ccccccCCceeecCCCCCc-ccC
Q 047903          116 SRKNVKRINVFEKQS-DF--AHLDDY--D------SHMHSLVLDLGSLVLIHYLS--GIENLFLLRYLKLNIPSLK-SLP  181 (430)
Q Consensus       116 ~~~~~r~L~l~~~~~-~~--~~~~~~--~------~~L~~L~L~l~~~~l~~lp~--~~~~l~~L~~L~L~~~~i~-~lp  181 (430)
                      ..++++.|.+. ++. ..  .+|..+  +      ++|+  +|++++|.++.+|.  .++++++|++|++++|.++ .+|
T Consensus       271 ~l~~L~~L~Ls-~n~~l~~~~lp~~~~~L~~~~~l~~L~--~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip  347 (636)
T 4eco_A          271 ALPEMQLINVA-CNRGISGEQLKDDWQALADAPVGEKIQ--IIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP  347 (636)
T ss_dssp             TCSSCCEEECT-TCTTSCHHHHHHHHHHHHHSGGGGTCC--EEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred             cCCCCCEEECc-CCCCCccccchHHHHhhhccccCCCCC--EEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh
Confidence            46689999999 665 54  366665  4      8999  99999999999998  9999999999999999999 999


Q ss_pred             hHhhhcCCCccEEecCCCCccccchhhccCcc-cceeecCCcccCCCcCc---c--CCCCcccceeecCCCCcchhhhcC
Q 047903          182 SPLLSNLLNLYTLDMPFSYIDHTADEFWKMNN-LRHLNFGSITLPAHPRK---Y--CRSLENLNFISALHPCCCTEDILG  255 (430)
Q Consensus       182 ~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~-L~~L~l~~~~~~~~lp~---~--l~~L~~L~~~~~~~~~~~~~~~l~  255 (430)
                       .+ +++++|++|++++|.+..+|..++++++ |++|++++|.+.. +|.   .  +++|+.|.+.++......+.. +.
T Consensus       348 -~~-~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~  423 (636)
T 4eco_A          348 -AF-GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKN-FD  423 (636)
T ss_dssp             -CC-EEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSS-CCSCCCTTCSSCEEEEECCSSCTTTTTTCS-SC
T ss_pred             -hh-CCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcc-cchhhhhcccCccCEEECcCCcCCCcchhh-hc
Confidence             77 9999999999999999999999999999 9999999999996 882   2  336777777666654445555 66


Q ss_pred             -------CCCCCceEEEEccccccHHHHH-HHhcCCCCCCEEEEecCCC----------CC-------CceEEEE-----
Q 047903          256 -------RLPNLRNLRIWGDLSYYQSLLS-QSLCTLTCLESLKLVSESK----------MP-------TLSKIVL-----  305 (430)
Q Consensus       256 -------~l~~L~~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~----------~~-------~L~~L~l-----  305 (430)
                             .+++|+.|++++|.  .. .++ ..+..+++|+.|+++++.-          ..       +|+.|++     
T Consensus       424 ~~~~~~~~~~~L~~L~Ls~N~--l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l  500 (636)
T 4eco_A          424 PLDPTPFKGINVSSINLSNNQ--IS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL  500 (636)
T ss_dssp             TTCSSCCCCCCEEEEECCSSC--CC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCC
T ss_pred             ccccccccCCCCCEEECcCCc--cC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcC
Confidence                   77899999999986  33 333 4456689999999987210          11       7888888     


Q ss_pred             -----Ecc--cccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeC------CCCCceEEcCCccccc
Q 047903          306 -----VEY--QFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSM------LWLEEWTMGIGAMPKL  372 (430)
Q Consensus       306 -----~~~--~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~------~~l~~~~~~~~~~~~L  372 (430)
                           .+.  .+ ++|+.|++++|.+...           +.....+++|+.|+++++      .-...++...+.+++|
T Consensus       501 ~~lp~~~~~~~l-~~L~~L~Ls~N~l~~i-----------p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L  568 (636)
T 4eco_A          501 TKLSDDFRATTL-PYLVGIDLSYNSFSKF-----------PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL  568 (636)
T ss_dssp             CBCCGGGSTTTC-TTCCEEECCSSCCSSC-----------CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred             CccChhhhhccC-CCcCEEECCCCCCCCc-----------ChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCC
Confidence                 333  77 8999999999988643           233457899999999642      2234455566789999


Q ss_pred             cEeEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903          373 ECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       373 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  405 (430)
                      ++|++++|. ++.+|..+.  ++|++|++++|+
T Consensus       569 ~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~  598 (636)
T 4eco_A          569 TQLQIGSND-IRKVNEKIT--PNISVLDIKDNP  598 (636)
T ss_dssp             CEEECCSSC-CCBCCSCCC--TTCCEEECCSCT
T ss_pred             CEEECCCCc-CCccCHhHh--CcCCEEECcCCC
Confidence            999999986 599998765  899999999996

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.86  E-value=2e-21  Score=183.32  Aligned_cols=257  Identities=14%  Similarity=0.128  Sum_probs=192.0

Q ss_pred             CeeEEEEeecCCCccccccccCcceEEEEEecCCccccccc-ccccccCCceeecCCCCCccc-ChHhhhcCCCccEEec
Q 047903          119 NVKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLS-GIENLFLLRYLKLNIPSLKSL-PSPLLSNLLNLYTLDM  196 (430)
Q Consensus       119 ~~r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~l-p~~i~~~L~~L~~L~L  196 (430)
                      +++.+.+. +.....++..+.++++  +|++++|.++.++. .|+++++|++|++++|.++.+ |..+ +++++|++|++
T Consensus        32 ~l~~l~~~-~~~l~~lp~~~~~~l~--~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCS-DLGLEKVPKDLPPDTA--LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF-APLVKLERLYL  107 (330)
T ss_dssp             ETTEEECT-TSCCCSCCCSCCTTCC--EEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEEC
T ss_pred             CCeEEEec-CCCccccCccCCCCCe--EEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHh-cCCCCCCEEEC
Confidence            46777777 6666667777788888  89999999987775 788999999999999999988 5556 99999999999


Q ss_pred             CCCCccccchhhccCcccceeecCCcccCCCcC----ccCCCCcccceeecCCCC--cchhhhcCCCCCCceEEEEcccc
Q 047903          197 PFSYIDHTADEFWKMNNLRHLNFGSITLPAHPR----KYCRSLENLNFISALHPC--CCTEDILGRLPNLRNLRIWGDLS  270 (430)
Q Consensus       197 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~  270 (430)
                      ++|.++.+|..+.  ++|++|++++|.+.. ++    ..+++|+.|.+..+....  ..+.. ++.+++|+.|++.++. 
T Consensus       108 s~n~l~~l~~~~~--~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~l~~L~~L~l~~n~-  182 (330)
T 1xku_A          108 SKNQLKELPEKMP--KTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGA-FQGMKKLSYIRIADTN-  182 (330)
T ss_dssp             CSSCCSBCCSSCC--TTCCEEECCSSCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTTG-GGGCTTCCEEECCSSC-
T ss_pred             CCCcCCccChhhc--ccccEEECCCCcccc-cCHhHhcCCccccEEECCCCcCCccCcChhh-ccCCCCcCEEECCCCc-
Confidence            9999998887654  789999999999887 66    567777777666555321  33445 7888999999998885 


Q ss_pred             ccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEE-EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCccc
Q 047903          271 YYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVL-VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLK  349 (430)
Q Consensus       271 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~  349 (430)
                       . ..++..+  .++|+.|++++    ..++.+.. ++..+ ++|+.|++++|.+...+          ......+++|+
T Consensus       183 -l-~~l~~~~--~~~L~~L~l~~----n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~----------~~~~~~l~~L~  243 (330)
T 1xku_A          183 -I-TTIPQGL--PPSLTELHLDG----NKITKVDAASLKGL-NNLAKLGLSFNSISAVD----------NGSLANTPHLR  243 (330)
T ss_dssp             -C-CSCCSSC--CTTCSEEECTT----SCCCEECTGGGTTC-TTCCEEECCSSCCCEEC----------TTTGGGSTTCC
T ss_pred             -c-ccCCccc--cccCCEEECCC----CcCCccCHHHhcCC-CCCCEEECCCCcCceeC----------hhhccCCCCCC
Confidence             1 1222222  26888888874    34554422 46677 89999999999875432          00134678999


Q ss_pred             EEEEeeCCCCCceEEcCCccccccEeEEeecCCCCcCCCC-CC------CCCCCCEEEEecCh
Q 047903          350 VLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQ-PW------CIKSLNKFNCWWPQ  405 (430)
Q Consensus       350 ~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-l~------~l~~L~~L~l~~~~  405 (430)
                      .|++++ +.+..++.....+++|++|++++|+ ++.+|.. +.      ..++|+.++++++|
T Consensus       244 ~L~L~~-N~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~  304 (330)
T 1xku_A          244 ELHLNN-NKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNP  304 (330)
T ss_dssp             EEECCS-SCCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             EEECCC-CcCccCChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCc
Confidence            999998 4677777667788999999999875 6666542 22      24788999999988

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.86  E-value=3.8e-21  Score=189.24  Aligned_cols=263  Identities=17%  Similarity=0.075  Sum_probs=179.0

Q ss_pred             CCCeeEEEEeecCCCccccccc--cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEE
Q 047903          117 RKNVKRINVFEKQSDFAHLDDY--DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTL  194 (430)
Q Consensus       117 ~~~~r~L~l~~~~~~~~~~~~~--~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L  194 (430)
                      ..++++|.+. ++.+..++ .+  +++|+  +|++++|.++.+|  ++.+++|++|++++|.++.+|  + +++++|++|
T Consensus        41 l~~L~~L~Ls-~n~l~~~~-~l~~l~~L~--~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~-~~l~~L~~L  111 (457)
T 3bz5_A           41 LATLTSLDCH-NSSITDMT-GIEKLTGLT--KLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--V-TPLTKLTYL  111 (457)
T ss_dssp             HTTCCEEECC-SSCCCCCT-TGGGCTTCS--EEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--C-TTCTTCCEE
T ss_pred             cCCCCEEEcc-CCCcccCh-hhcccCCCC--EEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--c-CCCCcCCEE
Confidence            5678888888 66666555 44  78888  8888888888775  788888888888888888875  5 888888888


Q ss_pred             ecCCCCccccchhhccCcccceeecCCcccCCCcC-ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccH
Q 047903          195 DMPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPR-KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQ  273 (430)
Q Consensus       195 ~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp-~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  273 (430)
                      ++++|.++.+|  ++++++|++|++++|.+.+ +| +.+++|+.|.+..+......  . ++.+++|+.|+++++.  ..
T Consensus       112 ~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~-l~l~~l~~L~~L~l~~n~~~~~~--~-~~~l~~L~~L~ls~n~--l~  183 (457)
T 3bz5_A          112 NCDTNKLTKLD--VSQNPLLTYLNCARNTLTE-IDVSHNTQLTELDCHLNKKITKL--D-VTPQTQLTTLDCSFNK--IT  183 (457)
T ss_dssp             ECCSSCCSCCC--CTTCTTCCEEECTTSCCSC-CCCTTCTTCCEEECTTCSCCCCC--C-CTTCTTCCEEECCSSC--CC
T ss_pred             ECCCCcCCeec--CCCCCcCCEEECCCCccce-eccccCCcCCEEECCCCCccccc--c-cccCCcCCEEECCCCc--cc
Confidence            88888888876  7888888888888888888 77 77777777776655432122  4 6777778888887775  11


Q ss_pred             HHHHHHhcCCCCCCEEEEecCC-------CCCCceEEEE--------EcccccCCcceEEEEccccCCccccccc-----
Q 047903          274 SLLSQSLCTLTCLESLKLVSES-------KMPTLSKIVL--------VEYQFPPRLTHLSFSNTELMEDPKSRAS-----  333 (430)
Q Consensus       274 ~~~~~~l~~l~~L~~L~l~~~~-------~~~~L~~L~l--------~~~~lp~~L~~L~L~~~~l~~~~~~~~~-----  333 (430)
                      . ++  +..+++|+.|+++++.       .+++|+.|++        .+..+ ++|+.|++++|.+...+.....     
T Consensus       184 ~-l~--l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~l-~~L~~L~l~~N~l~~~~~~~l~~L~~L  259 (457)
T 3bz5_A          184 E-LD--VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPL-TQLTYFDCSVNPLTELDVSTLSKLTTL  259 (457)
T ss_dssp             C-CC--CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCCTTC-TTCSEEECCSSCCSCCCCTTCTTCCEE
T ss_pred             e-ec--cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccCcccc-CCCCEEEeeCCcCCCcCHHHCCCCCEE
Confidence            1 22  5666777777776511       0455566655        23455 6777777777776654421000     


Q ss_pred             ----------------CCCeEEEcCCCCCcccEEEEeeCCCCCceEEc--------CCccccccEeEEeecCCCCcCCCC
Q 047903          334 ----------------SSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMG--------IGAMPKLECLIINPCAYLKKMPEQ  389 (430)
Q Consensus       334 ----------------~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--------~~~~~~L~~L~l~~c~~l~~lp~~  389 (430)
                                      ....  .....+++|+.|+++++..++.++..        ...+++|+.|++++| .++.++  
T Consensus       260 ~l~~n~L~~L~l~~n~~~~~--~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--  334 (457)
T 3bz5_A          260 HCIQTDLLEIDLTHNTQLIY--FQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--  334 (457)
T ss_dssp             ECTTCCCSCCCCTTCTTCCE--EECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--
T ss_pred             eccCCCCCEEECCCCccCCc--ccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-cccccc--
Confidence                            0111  12345677888888776655555432        234566777777765 355564  


Q ss_pred             CCCCCCCCEEEEecCh
Q 047903          390 PWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       390 l~~l~~L~~L~l~~~~  405 (430)
                      +.++++|+.|+++++.
T Consensus       335 l~~l~~L~~L~l~~N~  350 (457)
T 3bz5_A          335 VSHNTKLKSLSCVNAH  350 (457)
T ss_dssp             CTTCTTCSEEECCSSC
T ss_pred             cccCCcCcEEECCCCC
Confidence            7788889999888776

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.86  E-value=3.3e-22  Score=204.38  Aligned_cols=268  Identities=19%  Similarity=0.153  Sum_probs=183.1

Q ss_pred             CeeEEEEeecCCCcccccc-c--cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEe
Q 047903          119 NVKRINVFEKQSDFAHLDD-Y--DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLD  195 (430)
Q Consensus       119 ~~r~L~l~~~~~~~~~~~~-~--~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~  195 (430)
                      +++.+.+. ++....++.. +  +++|+  +|++++|.++.+|..++.+++|++|++++|.++.+++..|+++++|++|+
T Consensus       255 ~L~~L~l~-~n~l~~~~~~~~~~l~~L~--~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  331 (606)
T 3t6q_A          255 SVESINLQ-KHYFFNISSNTFHCFSGLQ--ELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS  331 (606)
T ss_dssp             EEEEEECT-TCCCSSCCTTTTTTCTTCS--EEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEE
T ss_pred             ceeEEEee-cCccCccCHHHhccccCCC--EEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEE
Confidence            57788887 6666555554 3  67777  88888888888888888888888888888888877443338888888888


Q ss_pred             cCCCCcc-ccchh-hccCcccceeecCCcccCCCc--C---ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEcc
Q 047903          196 MPFSYID-HTADE-FWKMNNLRHLNFGSITLPAHP--R---KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGD  268 (430)
Q Consensus       196 L~~~~l~-~lp~~-i~~L~~L~~L~l~~~~~~~~l--p---~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  268 (430)
                      +++|.+. .+|.. ++++++|++|++++|.+....  |   +.+++|+.|.+.++......+.. ++.+++|++|+++++
T Consensus       332 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n  410 (606)
T 3t6q_A          332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA-FKECPQLELLDLAFT  410 (606)
T ss_dssp             CCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTT-TTTCTTCSEEECTTC
T ss_pred             CCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHH-hcCCccCCeEECCCC
Confidence            8888665 56554 778888888888888877622  3   45566666665554433334445 777888888888777


Q ss_pred             ccccHHHHH-HHhcCCCCCCEEEEecCC---C-------CCCceEEEE--------------EcccccCCcceEEEEccc
Q 047903          269 LSYYQSLLS-QSLCTLTCLESLKLVSES---K-------MPTLSKIVL--------------VEYQFPPRLTHLSFSNTE  323 (430)
Q Consensus       269 ~~~~~~~~~-~~l~~l~~L~~L~l~~~~---~-------~~~L~~L~l--------------~~~~lp~~L~~L~L~~~~  323 (430)
                      .  .....+ ..+..+++|+.|+++++.   .       +++|+.|++              ++..+ ++|+.|++++|.
T Consensus       411 ~--l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l-~~L~~L~Ls~n~  487 (606)
T 3t6q_A          411 R--LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL-GRLEILVLSFCD  487 (606)
T ss_dssp             C--EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGC-TTCCEEECTTSC
T ss_pred             c--CCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccC-CCccEEECCCCc
Confidence            5  222222 236677788888877611   0       455666655              24456 778888888887


Q ss_pred             cCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCce-EEcCCccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEe
Q 047903          324 LMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEW-TMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCW  402 (430)
Q Consensus       324 l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~  402 (430)
                      +...+          +.....+++|+.|+++++ .+... +.....+++| .|++++|......|..+..+++|+.++++
T Consensus       488 l~~~~----------~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  555 (606)
T 3t6q_A          488 LSSID----------QHAFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLR  555 (606)
T ss_dssp             CCEEC----------TTTTTTCTTCCEEECCSS-CCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECT
T ss_pred             cCccC----------hhhhccccCCCEEECCCC-ccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCC
Confidence            64321          112456889999999884 45443 3344567888 88999876444345557888999999998


Q ss_pred             cCh
Q 047903          403 WPQ  405 (430)
Q Consensus       403 ~~~  405 (430)
                      +||
T Consensus       556 ~N~  558 (606)
T 3t6q_A          556 QNP  558 (606)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            866

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.86  E-value=2.8e-21  Score=204.69  Aligned_cols=125  Identities=19%  Similarity=0.274  Sum_probs=79.4

Q ss_pred             CCCCeeEEEEeecCCCccc-cccc--cCcceEEEEEecCCc-cccc-ccccccccCCceeecCCCCCccc-ChHhhhcCC
Q 047903          116 SRKNVKRINVFEKQSDFAH-LDDY--DSHMHSLVLDLGSLV-LIHY-LSGIENLFLLRYLKLNIPSLKSL-PSPLLSNLL  189 (430)
Q Consensus       116 ~~~~~r~L~l~~~~~~~~~-~~~~--~~~L~~L~L~l~~~~-l~~l-p~~~~~l~~L~~L~L~~~~i~~l-p~~i~~~L~  189 (430)
                      .+.++++|.+. .+.+..+ +..+  +++|+  +|++++|. ...+ |..|+++++|++|+|++|.++.+ |..+ ++++
T Consensus        22 lp~~l~~LdLs-~N~i~~i~~~~~~~l~~L~--~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~-~~l~   97 (844)
T 3j0a_A           22 VLNTTERLLLS-FNYIRTVTASSFPFLEQLQ--LLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF-QGLF   97 (844)
T ss_dssp             SCTTCCEEEEE-SCCCCEECSSSCSSCCSCS--EEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSS-CSCS
T ss_pred             CCCCcCEEECC-CCcCCccChhHCcccccCe--EEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHc-cCCc
Confidence            45667777777 5555443 3344  66666  77777774 3345 45677777777777777777766 4444 7777


Q ss_pred             CccEEecCCCCccc-cchh--hccCcccceeecCCcccCCCcC----ccCCCCcccceeecC
Q 047903          190 NLYTLDMPFSYIDH-TADE--FWKMNNLRHLNFGSITLPAHPR----KYCRSLENLNFISAL  244 (430)
Q Consensus       190 ~L~~L~L~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~  244 (430)
                      +|++|+|++|.+.. +|..  ++++++|++|++++|.+.+..|    +.+++|+.|.+..+.
T Consensus        98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~  159 (844)
T 3j0a_A           98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ  159 (844)
T ss_dssp             SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred             ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence            77777777776664 4443  6777777777777777766222    456666666655544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.85  E-value=9.3e-23  Score=191.00  Aligned_cols=224  Identities=13%  Similarity=0.074  Sum_probs=154.9

Q ss_pred             CCCCeeEEEEee-cCCCccccccc--cCcceEEEEEecCCccc-ccccccccccCCceeecCCCCCc-ccChHhhhcCCC
Q 047903          116 SRKNVKRINVFE-KQSDFAHLDDY--DSHMHSLVLDLGSLVLI-HYLSGIENLFLLRYLKLNIPSLK-SLPSPLLSNLLN  190 (430)
Q Consensus       116 ~~~~~r~L~l~~-~~~~~~~~~~~--~~~L~~L~L~l~~~~l~-~lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~~~L~~  190 (430)
                      ..+.+++|.+.. +.....++..+  +++|+  +|++++|.++ .+|..++++++|++|++++|.++ .+|..+ +++++
T Consensus        74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~--~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~  150 (313)
T 1ogq_A           74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLH--YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPN  150 (313)
T ss_dssp             GCTTCSEEEEEEETTEESCCCGGGGGCTTCS--EEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG-GGCTT
T ss_pred             CCCCCCeeeCCCCCcccccCChhHhcCCCCC--EEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHH-hcCCC
Confidence            567899999983 44444577777  89999  9999999998 88899999999999999999999 678888 99999


Q ss_pred             ccEEecCCCCcc-ccchhhccCc-ccceeecCCcccCCCcC---ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEE
Q 047903          191 LYTLDMPFSYID-HTADEFWKMN-NLRHLNFGSITLPAHPR---KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRI  265 (430)
Q Consensus       191 L~~L~L~~~~l~-~lp~~i~~L~-~L~~L~l~~~~~~~~lp---~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l  265 (430)
                      |++|++++|.++ .+|..+++++ +|++|++++|.+.+.+|   ..++ |+.|.+.++......+.. ++.+++|+.|++
T Consensus       151 L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L  228 (313)
T 1ogq_A          151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVL-FGSDKNTQKIHL  228 (313)
T ss_dssp             CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGG-CCTTSCCSEEEC
T ss_pred             CCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHH-HhcCCCCCEEEC
Confidence            999999999998 8899999998 99999999999986455   2222 333333333222223333 555555555555


Q ss_pred             EccccccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEEEcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCC
Q 047903          266 WGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGF  345 (430)
Q Consensus       266 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~  345 (430)
                      +++.  .....                     +       .+..+ ++|++|++++|.+...          ++.....+
T Consensus       229 ~~N~--l~~~~---------------------~-------~~~~l-~~L~~L~Ls~N~l~~~----------~p~~l~~l  267 (313)
T 1ogq_A          229 AKNS--LAFDL---------------------G-------KVGLS-KNLNGLDLRNNRIYGT----------LPQGLTQL  267 (313)
T ss_dssp             CSSE--ECCBG---------------------G-------GCCCC-TTCCEEECCSSCCEEC----------CCGGGGGC
T ss_pred             CCCc--eeeec---------------------C-------ccccc-CCCCEEECcCCcccCc----------CChHHhcC
Confidence            5553  11110                     0       12234 6777777777765421          11123456


Q ss_pred             CcccEEEEeeCCCCC-ceEEcCCccccccEeEEeecCCCCcCC
Q 047903          346 PNLKVLHLKSMLWLE-EWTMGIGAMPKLECLIINPCAYLKKMP  387 (430)
Q Consensus       346 ~~L~~L~l~~~~~l~-~~~~~~~~~~~L~~L~l~~c~~l~~lp  387 (430)
                      ++|+.|++++ +.+. .+|. .+.+++|+.+++.+++.+...|
T Consensus       268 ~~L~~L~Ls~-N~l~~~ip~-~~~l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          268 KFLHSLNVSF-NNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             TTCCEEECCS-SEEEEECCC-STTGGGSCGGGTCSSSEEESTT
T ss_pred             cCCCEEECcC-CcccccCCC-CccccccChHHhcCCCCccCCC
Confidence            7777777776 3344 3333 3678888888888877665544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.85  E-value=5.1e-21  Score=195.57  Aligned_cols=168  Identities=16%  Similarity=0.185  Sum_probs=79.7

Q ss_pred             CCCCeeEEEEeecCCCcccc-ccc--cCcceEEEEEecCCccccc-ccccccccCCceeecCCCCCcccC-hHhhhcCCC
Q 047903          116 SRKNVKRINVFEKQSDFAHL-DDY--DSHMHSLVLDLGSLVLIHY-LSGIENLFLLRYLKLNIPSLKSLP-SPLLSNLLN  190 (430)
Q Consensus       116 ~~~~~r~L~l~~~~~~~~~~-~~~--~~~L~~L~L~l~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp-~~i~~~L~~  190 (430)
                      ...++++|.+. ++.+..++ ..+  +++|+  +|++++|.++.+ |..|+++++|++|++++|.++.+| ..+ +++++
T Consensus        54 ~l~~L~~L~Ls-~n~l~~i~~~~~~~l~~L~--~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~  129 (606)
T 3vq2_A           54 NFSELQWLDLS-RCEIETIEDKAWHGLHHLS--NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPI-GQLIT  129 (606)
T ss_dssp             TCTTCCEEECT-TCCCCEECTTTTTTCTTCC--EEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCC-TTCTT
T ss_pred             CCccCcEEeCC-CCcccccCHHHhhchhhcC--EeECCCCcccccChhhcCCcccCCEEEccCCcccccccccc-CCCCC
Confidence            34445555554 33333332 222  44444  555555555543 344555555555555555555443 223 55555


Q ss_pred             ccEEecCCCCcc--ccchhhccCcccceeecCCcccCCCcC-ccCCCCcc-------cceeecCCCCcchhhhcCCCCCC
Q 047903          191 LYTLDMPFSYID--HTADEFWKMNNLRHLNFGSITLPAHPR-KYCRSLEN-------LNFISALHPCCCTEDILGRLPNL  260 (430)
Q Consensus       191 L~~L~L~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~lp-~~l~~L~~-------L~~~~~~~~~~~~~~~l~~l~~L  260 (430)
                      |++|++++|.+.  .+|..++++++|++|++++|.+.+ ++ ..+..+..       |.+..+... ..+.. .....+|
T Consensus       130 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~-~~~~~~L  206 (606)
T 3vq2_A          130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQ-AFQGIKL  206 (606)
T ss_dssp             CCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE-ECTTTTHHHHHCTTCCCEEECTTCCCC-EECTT-TTTTCEE
T ss_pred             CCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee-cChhhhhhhhccccccceeeccCCCcc-eeCcc-cccCcee
Confidence            555555555444  245555555555555555555544 32 22222211       211111111 11222 2233378


Q ss_pred             ceEEEEccccccHHHHHHHhcCCCCCCEEEE
Q 047903          261 RNLRIWGDLSYYQSLLSQSLCTLTCLESLKL  291 (430)
Q Consensus       261 ~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l  291 (430)
                      +.|+++++. ......+..+..+++|+.+++
T Consensus       207 ~~L~L~~n~-~~~~~~~~~~~~l~~L~~l~l  236 (606)
T 3vq2_A          207 HELTLRGNF-NSSNIMKTCLQNLAGLHVHRL  236 (606)
T ss_dssp             EEEEEESCC-SCHHHHHHHHHTTTTCEEEEE
T ss_pred             eeeeccCCc-cchhHHHHHhccccccccccc
Confidence            888888875 122455666677777666655

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.85  E-value=9.3e-22  Score=206.11  Aligned_cols=265  Identities=14%  Similarity=0.165  Sum_probs=200.5

Q ss_pred             CCCCeeEEEEeecCC-Cc--cccccc--c-------CcceEEEEEecCCccccccc--ccccccCCceeecCCCCCcccC
Q 047903          116 SRKNVKRINVFEKQS-DF--AHLDDY--D-------SHMHSLVLDLGSLVLIHYLS--GIENLFLLRYLKLNIPSLKSLP  181 (430)
Q Consensus       116 ~~~~~r~L~l~~~~~-~~--~~~~~~--~-------~~L~~L~L~l~~~~l~~lp~--~~~~l~~L~~L~L~~~~i~~lp  181 (430)
                      ...+++.|.+. ++. ..  .+|..+  +       ++|+  .|++++|.++.+|.  .++++++|++|++++|.++.+|
T Consensus       513 ~L~~L~~L~Ls-~N~~lsg~~iP~~i~~L~~~~~~l~~L~--~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp  589 (876)
T 4ecn_A          513 DLPELQSLNIA-CNRGISAAQLKADWTRLADDEDTGPKIQ--IFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE  589 (876)
T ss_dssp             GCSSCCEEECT-TCTTSCHHHHHHHHHHHHHCTTTTTTCC--EEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC
T ss_pred             CCCCCCEEECc-CCCCcccccchHHHHhhhhcccccCCcc--EEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch
Confidence            56789999999 665 54  355544  3       4889  99999999999998  8999999999999999999999


Q ss_pred             hHhhhcCCCccEEecCCCCccccchhhccCcc-cceeecCCcccCCCcCcc---C--CCCcccceeecCCCCcch---hh
Q 047903          182 SPLLSNLLNLYTLDMPFSYIDHTADEFWKMNN-LRHLNFGSITLPAHPRKY---C--RSLENLNFISALHPCCCT---ED  252 (430)
Q Consensus       182 ~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~-L~~L~l~~~~~~~~lp~~---l--~~L~~L~~~~~~~~~~~~---~~  252 (430)
                       .+ +++++|+.|++++|.+..+|..+.++++ |++|++++|.+.. +|..   +  ++|+.|.+.++......+   ..
T Consensus       590 -~~-~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~-lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~  666 (876)
T 4ecn_A          590 -AF-GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS  666 (876)
T ss_dssp             -CC-CTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCS-CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred             -hh-cCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCc-CchhhhccccCCCCEEECcCCcCCCccccchhh
Confidence             67 9999999999999999999999999999 9999999999996 8822   2  236666666554322111   12


Q ss_pred             hcC--CCCCCceEEEEccccccHHHHHH-HhcCCCCCCEEEEecCC--C-----C----------CCceEEEE-------
Q 047903          253 ILG--RLPNLRNLRIWGDLSYYQSLLSQ-SLCTLTCLESLKLVSES--K-----M----------PTLSKIVL-------  305 (430)
Q Consensus       253 ~l~--~l~~L~~L~l~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~--~-----~----------~~L~~L~l-------  305 (430)
                       ++  .+++|+.|++++|.  .. .++. .+..+++|+.|+++++.  .     +          ++|+.|++       
T Consensus       667 -l~~~~~~~L~~L~Ls~N~--L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~  742 (876)
T 4ecn_A          667 -MDDYKGINASTVTLSYNE--IQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS  742 (876)
T ss_dssp             -TTTCCCCCEEEEECCSSC--CC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC
T ss_pred             -hccccCCCcCEEEccCCc--CC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc
Confidence             22  34588999999886  33 3443 34578899999998621  0     1          16777776       


Q ss_pred             ---Ecc--cccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCC-----C-CCceEEcCCccccccE
Q 047903          306 ---VEY--QFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSML-----W-LEEWTMGIGAMPKLEC  374 (430)
Q Consensus       306 ---~~~--~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-----~-l~~~~~~~~~~~~L~~  374 (430)
                         .+.  .+ ++|+.|+|++|.+...           +.....+++|+.|++++++     + ...++...+.+++|+.
T Consensus       743 lp~~l~~~~l-~~L~~L~Ls~N~L~~l-----------p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~  810 (876)
T 4ecn_A          743 LSDDFRATTL-PYLSNMDVSYNCFSSF-----------PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQ  810 (876)
T ss_dssp             CCGGGSTTTC-TTCCEEECCSSCCSSC-----------CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCE
T ss_pred             chHHhhhccC-CCcCEEEeCCCCCCcc-----------chhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCE
Confidence               233  66 7888888888877542           2334578999999997622     2 3345555677999999


Q ss_pred             eEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903          375 LIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       375 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  405 (430)
                      |++++|. ++.+|..+.  ++|+.|++++|+
T Consensus       811 L~Ls~N~-L~~Ip~~l~--~~L~~LdLs~N~  838 (876)
T 4ecn_A          811 LQIGSND-IRKVDEKLT--PQLYILDIADNP  838 (876)
T ss_dssp             EECCSSC-CCBCCSCCC--SSSCEEECCSCT
T ss_pred             EECCCCC-CCccCHhhc--CCCCEEECCCCC
Confidence            9999986 599998765  699999999997

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.85  E-value=7.5e-21  Score=188.06  Aligned_cols=270  Identities=16%  Similarity=0.177  Sum_probs=138.4

Q ss_pred             CCCCeeEEEEeecCCCccccccc--cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccE
Q 047903          116 SRKNVKRINVFEKQSDFAHLDDY--DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYT  193 (430)
Q Consensus       116 ~~~~~r~L~l~~~~~~~~~~~~~--~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~  193 (430)
                      ...++++|.+. ++....++. +  +++|+  +|++++|.+..++. ++++++|++|++++|.++.+|. + +++++|++
T Consensus        66 ~l~~L~~L~Ls-~n~l~~~~~-~~~l~~L~--~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~  138 (466)
T 1o6v_A           66 YLNNLTQINFS-NNQLTDITP-LKNLTKLV--DILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-L-KNLTNLNR  138 (466)
T ss_dssp             GCTTCCEEECC-SSCCCCCGG-GTTCTTCC--EEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-G-TTCTTCSE
T ss_pred             hhcCCCEEECC-CCccCCchh-hhccccCC--EEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH-H-cCCCCCCE
Confidence            45677888887 666655554 4  77777  77777777776665 7777778888887777777754 5 77777777


Q ss_pred             EecCCCCccccch--------------------hhccCcccceeecCCcccCCCcC--ccCCCCcccceeecCCCCcchh
Q 047903          194 LDMPFSYIDHTAD--------------------EFWKMNNLRHLNFGSITLPAHPR--KYCRSLENLNFISALHPCCCTE  251 (430)
Q Consensus       194 L~L~~~~l~~lp~--------------------~i~~L~~L~~L~l~~~~~~~~lp--~~l~~L~~L~~~~~~~~~~~~~  251 (430)
                      |++++|.+..+|.                    .++++++|++|++++|.+.. ++  ..+++|+.|.+.++...  ...
T Consensus       139 L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~--~~~  215 (466)
T 1o6v_A          139 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD-ISVLAKLTNLESLIATNNQIS--DIT  215 (466)
T ss_dssp             EEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCC--CCG
T ss_pred             EECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCC-ChhhccCCCCCEEEecCCccc--ccc
Confidence            7777776665543                    13344445555555555444 33  44444444444433321  111


Q ss_pred             hhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCC--------CCCCceEEEE---------EcccccCCc
Q 047903          252 DILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSES--------KMPTLSKIVL---------VEYQFPPRL  314 (430)
Q Consensus       252 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~--------~~~~L~~L~l---------~~~~lp~~L  314 (430)
                      . ++.+++|++|+++++.-  .. + ..+..+++|+.|+++++.        .+++|+.|++         .+..+ ++|
T Consensus       216 ~-~~~l~~L~~L~l~~n~l--~~-~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l-~~L  289 (466)
T 1o6v_A          216 P-LGILTNLDELSLNGNQL--KD-I-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGL-TAL  289 (466)
T ss_dssp             G-GGGCTTCCEEECCSSCC--CC-C-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTC-TTC
T ss_pred             c-ccccCCCCEEECCCCCc--cc-c-hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCC-Ccc
Confidence            2 33344444444444431  10 0 123444445555444310        0334444443         12233 445


Q ss_pred             ceEEEEccccCCccccc-ccCCCeE---------EEcCCCCCcccEEEEeeCCCCCceEEcCCccccccEeEEeecCCCC
Q 047903          315 THLSFSNTELMEDPKSR-ASSSRKL---------TCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLK  384 (430)
Q Consensus       315 ~~L~L~~~~l~~~~~~~-~~~~~~~---------~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~  384 (430)
                      +.|++++|.+...+... ......+         ......+++|+.|+++++ .+..++ ....+++|+.|++++|. +.
T Consensus       290 ~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~-l~  366 (466)
T 1o6v_A          290 TNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQ-IS  366 (466)
T ss_dssp             SEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSC-CC
T ss_pred             CeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCc-cC
Confidence            55555555443322100 0000000         000234556666666653 344332 23456666666666654 33


Q ss_pred             cCCCCCCCCCCCCEEEEecCh
Q 047903          385 KMPEQPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       385 ~lp~~l~~l~~L~~L~l~~~~  405 (430)
                      .++. +..+++|++|++++|+
T Consensus       367 ~~~~-~~~l~~L~~L~l~~n~  386 (466)
T 1o6v_A          367 DLTP-LANLTRITQLGLNDQA  386 (466)
T ss_dssp             BCGG-GTTCTTCCEEECCCEE
T ss_pred             ccch-hhcCCCCCEEeccCCc
Confidence            3333 5666777777776665

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.85  E-value=8.8e-22  Score=183.79  Aligned_cols=241  Identities=18%  Similarity=0.137  Sum_probs=166.3

Q ss_pred             EEEEeecCCCccccccccCcceEEEEEecCCccccccc-ccccccCCceeecCCCCCccc---ChHhhhcCCCccEEecC
Q 047903          122 RINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLS-GIENLFLLRYLKLNIPSLKSL---PSPLLSNLLNLYTLDMP  197 (430)
Q Consensus       122 ~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~l---p~~i~~~L~~L~~L~L~  197 (430)
                      .+... +.....+|..+.++++  +|++++|.++.+|. .|+++++|++|++++|.++.+   |..+ .++++|++|+++
T Consensus        11 ~l~c~-~~~l~~ip~~~~~~l~--~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~Ls   86 (306)
T 2z66_A           11 EIRCN-SKGLTSVPTGIPSSAT--RLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLDLS   86 (306)
T ss_dssp             EEECC-SSCCSSCCSCCCTTCC--EEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEECC
T ss_pred             EEEcC-CCCcccCCCCCCCCCC--EEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEECC
Confidence            44454 5556667777778888  89999999988885 478899999999999988755   5667 789999999999


Q ss_pred             CCCccccchhhccCcccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHH
Q 047903          198 FSYIDHTADEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLS  277 (430)
Q Consensus       198 ~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  277 (430)
                      +|.+..+|..+.++++|++|++++|.+.. +|.                   ... +..+++|+.|+++++.  .....+
T Consensus        87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~~-~~~-------------------~~~-~~~l~~L~~L~l~~n~--l~~~~~  143 (306)
T 2z66_A           87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQ-MSE-------------------FSV-FLSLRNLIYLDISHTH--TRVAFN  143 (306)
T ss_dssp             SCSEEEEEEEEETCTTCCEEECTTSEEES-STT-------------------TTT-TTTCTTCCEEECTTSC--CEECST
T ss_pred             CCccccChhhcCCCCCCCEEECCCCcccc-ccc-------------------chh-hhhccCCCEEECCCCc--CCccch
Confidence            99988888888899999999999998876 330                   112 4455555555555554  222233


Q ss_pred             HHhcCCCCCCEEEEecCCCCCCceE--EEEEcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEee
Q 047903          278 QSLCTLTCLESLKLVSESKMPTLSK--IVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKS  355 (430)
Q Consensus       278 ~~l~~l~~L~~L~l~~~~~~~~L~~--L~l~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  355 (430)
                      ..+..+++|+.|++++    ..+..  +.-++..+ ++|++|++++|.+...+          +.....+++|+.|++++
T Consensus       144 ~~~~~l~~L~~L~l~~----n~l~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~----------~~~~~~l~~L~~L~L~~  208 (306)
T 2z66_A          144 GIFNGLSSLEVLKMAG----NSFQENFLPDIFTEL-RNLTFLDLSQCQLEQLS----------PTAFNSLSSLQVLNMSH  208 (306)
T ss_dssp             TTTTTCTTCCEEECTT----CEEGGGEECSCCTTC-TTCCEEECTTSCCCEEC----------TTTTTTCTTCCEEECTT
T ss_pred             hhcccCcCCCEEECCC----CccccccchhHHhhC-cCCCEEECCCCCcCCcC----------HHHhcCCCCCCEEECCC
Confidence            3445555566665553    11221  11145566 78888888888764321          11234577888888887


Q ss_pred             CCCCCceEE-cCCccccccEeEEeecCCCCcCCCCCCCCC-CCCEEEEecCh
Q 047903          356 MLWLEEWTM-GIGAMPKLECLIINPCAYLKKMPEQPWCIK-SLNKFNCWWPQ  405 (430)
Q Consensus       356 ~~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~-~L~~L~l~~~~  405 (430)
                       +.+..++. ....+++|+.|++++|......|..+..++ +|++|++++|+
T Consensus       209 -N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          209 -NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             -SCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             -CccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence             44555433 335688999999999875555677788884 89999998865

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.85  E-value=9.2e-21  Score=190.10  Aligned_cols=138  Identities=16%  Similarity=0.104  Sum_probs=112.0

Q ss_pred             eEEEEeecCCCccccccccCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCccc-ChHhhhcCCCccEEecCC
Q 047903          121 KRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSL-PSPLLSNLLNLYTLDMPF  198 (430)
Q Consensus       121 r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~i~~~L~~L~~L~L~~  198 (430)
                      +.+.+. ++....+|..+.++++  +|++++|.++.++ ..|+++++|++|++++|.++.+ |..+ +++++|++|++++
T Consensus         3 ~~l~ls-~n~l~~ip~~~~~~L~--~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~   78 (520)
T 2z7x_B            3 FLVDRS-KNGLIHVPKDLSQKTT--ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVF-KFNQELEYLDLSH   78 (520)
T ss_dssp             CEEECT-TSCCSSCCCSCCTTCS--EEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGG-TTCTTCCEEECCS
T ss_pred             ceEecC-CCCccccccccccccc--EEECCCCcccccChhhccccccccEEecCCCccCCcChHHh-hcccCCCEEecCC
Confidence            567777 7777778877788999  9999999999776 6899999999999999999988 4555 9999999999999


Q ss_pred             CCccccchhhccCcccceeecCCcccCC-CcC---ccCCCCcccceeecCCCCcchhhhcCCCCCC--ceEEEEcc
Q 047903          199 SYIDHTADEFWKMNNLRHLNFGSITLPA-HPR---KYCRSLENLNFISALHPCCCTEDILGRLPNL--RNLRIWGD  268 (430)
Q Consensus       199 ~~l~~lp~~i~~L~~L~~L~l~~~~~~~-~lp---~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L--~~L~l~~~  268 (430)
                      |.++.+|..  .+++|++|++++|.+.+ .+|   +.+++|+.|.+.++....   .. ++.+++|  +.|++.++
T Consensus        79 N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~-~~~l~~L~L~~L~l~~n  148 (520)
T 2z7x_B           79 NKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SS-VLPIAHLNISKVLLVLG  148 (520)
T ss_dssp             SCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GG-GGGGTTSCEEEEEEEEC
T ss_pred             CceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hh-ccccccceeeEEEeecc
Confidence            999999986  89999999999999987 355   678888888777765422   22 4444555  66666654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.85  E-value=2.6e-21  Score=182.60  Aligned_cols=261  Identities=17%  Similarity=0.153  Sum_probs=197.9

Q ss_pred             CCCCeeEEEEeecCCCccccc-cc--cCcceEEEEEecCCccccc-ccccccccCCceeecCCCCCcccChHhhhcCCCc
Q 047903          116 SRKNVKRINVFEKQSDFAHLD-DY--DSHMHSLVLDLGSLVLIHY-LSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNL  191 (430)
Q Consensus       116 ~~~~~r~L~l~~~~~~~~~~~-~~--~~~L~~L~L~l~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L  191 (430)
                      .++.++.|.+. ++.+..++. .+  +++|+  +|++++|.++.+ |..|+++++|++|++++|.++.+|..+ .  ++|
T Consensus        50 ~~~~l~~L~L~-~n~i~~~~~~~~~~l~~L~--~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~-~--~~L  123 (330)
T 1xku_A           50 LPPDTALLDLQ-NNKITEIKDGDFKNLKNLH--TLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM-P--KTL  123 (330)
T ss_dssp             CCTTCCEEECC-SSCCCCBCTTTTTTCTTCC--EEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC-C--TTC
T ss_pred             CCCCCeEEECC-CCcCCEeChhhhccCCCCC--EEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhh-c--ccc
Confidence            35679999999 777766665 34  88899  999999999976 788999999999999999999999877 3  899


Q ss_pred             cEEecCCCCccccchh-hccCcccceeecCCcccCC--CcC---ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEE
Q 047903          192 YTLDMPFSYIDHTADE-FWKMNNLRHLNFGSITLPA--HPR---KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRI  265 (430)
Q Consensus       192 ~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~--~lp---~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l  265 (430)
                      ++|++++|.+..++.. +.++++|++|++++|.+..  ..|   ..+++|+.|.+.++... ..+.. +  .++|++|++
T Consensus       124 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~-~--~~~L~~L~l  199 (330)
T 1xku_A          124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG-L--PPSLTELHL  199 (330)
T ss_dssp             CEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSS-C--CTTCSEEEC
T ss_pred             cEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcc-c--cccCCEEEC
Confidence            9999999999988764 8999999999999999864  133   55666776666555432 12222 2  388999999


Q ss_pred             EccccccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEE-EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCC
Q 047903          266 WGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVL-VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDG  344 (430)
Q Consensus       266 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~  344 (430)
                      +++.  .....+..+..+++|+.|++++    ..++.+.. ++..+ ++|++|++++|.+...|           .....
T Consensus       200 ~~n~--l~~~~~~~~~~l~~L~~L~Ls~----n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~lp-----------~~l~~  261 (330)
T 1xku_A          200 DGNK--ITKVDAASLKGLNNLAKLGLSF----NSISAVDNGSLANT-PHLRELHLNNNKLVKVP-----------GGLAD  261 (330)
T ss_dssp             TTSC--CCEECTGGGTTCTTCCEEECCS----SCCCEECTTTGGGS-TTCCEEECCSSCCSSCC-----------TTTTT
T ss_pred             CCCc--CCccCHHHhcCCCCCCEEECCC----CcCceeChhhccCC-CCCCEEECCCCcCccCC-----------hhhcc
Confidence            9986  4444456788999999999985    44555533 46677 99999999999886543           22457


Q ss_pred             CCcccEEEEeeCCCCCceEEcC-------CccccccEeEEeecCCCC--cCCCCCCCCCCCCEEEEecCh
Q 047903          345 FPNLKVLHLKSMLWLEEWTMGI-------GAMPKLECLIINPCAYLK--KMPEQPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       345 ~~~L~~L~l~~~~~l~~~~~~~-------~~~~~L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l~~~~  405 (430)
                      +++|++|++++ +.+..++...       ...++|+.|++.+++...  ..|..+..+++++.+++++|.
T Consensus       262 l~~L~~L~l~~-N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          262 HKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CSSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             CCCcCEEECCC-CcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            89999999998 4566654322       125789999999987432  345678889999999998863

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.85  E-value=1.2e-21  Score=184.67  Aligned_cols=219  Identities=18%  Similarity=0.214  Sum_probs=165.6

Q ss_pred             CCCeeEEEEeecCCCccccccc--cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEE
Q 047903          117 RKNVKRINVFEKQSDFAHLDDY--DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTL  194 (430)
Q Consensus       117 ~~~~r~L~l~~~~~~~~~~~~~--~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L  194 (430)
                      ..+++.|.+. ++....++..+  +++|+  +|++++|.++.+|..++++++|++|++++|.++.+|..+ +++++|++|
T Consensus        80 ~~~l~~L~L~-~n~l~~lp~~l~~l~~L~--~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l-~~l~~L~~L  155 (328)
T 4fcg_A           80 QPGRVALELR-SVPLPQFPDQAFRLSHLQ--HMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASI-ASLNRLREL  155 (328)
T ss_dssp             STTCCEEEEE-SSCCSSCCSCGGGGTTCS--EEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGG-GGCTTCCEE
T ss_pred             ccceeEEEcc-CCCchhcChhhhhCCCCC--EEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHH-hcCcCCCEE
Confidence            4678999999 77777788877  88999  999999999999999999999999999999999999998 999999999


Q ss_pred             ecCCC-Cccccchhhcc---------CcccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEE
Q 047903          195 DMPFS-YIDHTADEFWK---------MNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLR  264 (430)
Q Consensus       195 ~L~~~-~l~~lp~~i~~---------L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~  264 (430)
                      ++++| .+..+|..++.         +++|++|++++|.+.. +|                     .. ++.+++|++|+
T Consensus       156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-lp---------------------~~-l~~l~~L~~L~  212 (328)
T 4fcg_A          156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LP---------------------AS-IANLQNLKSLK  212 (328)
T ss_dssp             EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC-CC---------------------GG-GGGCTTCCEEE
T ss_pred             ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc-ch---------------------Hh-hcCCCCCCEEE
Confidence            99998 66688887654         9999999999998875 55                     22 44555566666


Q ss_pred             EEccccccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEEEcccccCCcceEEEEccccCCcccccccCCCeEEEcCCC
Q 047903          265 IWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDG  344 (430)
Q Consensus       265 l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~  344 (430)
                      +++|.  . ..++..+..+++|+.|++++   +.....+.-++..+ ++|++|++++|.+...          ++.....
T Consensus       213 L~~N~--l-~~l~~~l~~l~~L~~L~Ls~---n~~~~~~p~~~~~l-~~L~~L~L~~n~~~~~----------~p~~~~~  275 (328)
T 4fcg_A          213 IRNSP--L-SALGPAIHHLPKLEELDLRG---CTALRNYPPIFGGR-APLKRLILKDCSNLLT----------LPLDIHR  275 (328)
T ss_dssp             EESSC--C-CCCCGGGGGCTTCCEEECTT---CTTCCBCCCCTTCC-CCCCEEECTTCTTCCB----------CCTTGGG
T ss_pred             ccCCC--C-CcCchhhccCCCCCEEECcC---CcchhhhHHHhcCC-CCCCEEECCCCCchhh----------cchhhhc
Confidence            66554  1 12333455566666666654   22222222245566 8888888888876432          1222456


Q ss_pred             CCcccEEEEeeCCCCCceEEcCCccccccEeEEee
Q 047903          345 FPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINP  379 (430)
Q Consensus       345 ~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~  379 (430)
                      +++|+.|++++++....+|...+.+++|+.+.+..
T Consensus       276 l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          276 LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP  310 (328)
T ss_dssp             CTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred             CCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence            88899999998888888887778888888887765

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.85  E-value=6.9e-22  Score=186.71  Aligned_cols=232  Identities=16%  Similarity=0.135  Sum_probs=117.1

Q ss_pred             eeEEEEeecCCCccccccccCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCccEEecCC
Q 047903          120 VKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPF  198 (430)
Q Consensus       120 ~r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~  198 (430)
                      ++.+.+. ++....+|..+.++++  +|++++|.++.++ ..|+++++|++|++++|.++.+++..|+++++|++|++++
T Consensus        35 l~~l~~~-~~~l~~ip~~~~~~l~--~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  111 (332)
T 2ft3_A           35 LRVVQCS-DLGLKAVPKEISPDTT--LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK  111 (332)
T ss_dssp             TTEEECC-SSCCSSCCSCCCTTCC--EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred             CCEEECC-CCCccccCCCCCCCCe--EEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence            4555555 5555555555566666  6666666666554 4566666777777776666665332226667777777766


Q ss_pred             CCccccchhhccCcccceeecCCcccCCCcC----ccCCCCcccceeecCCC--CcchhhhcCCCCCCceEEEEcccccc
Q 047903          199 SYIDHTADEFWKMNNLRHLNFGSITLPAHPR----KYCRSLENLNFISALHP--CCCTEDILGRLPNLRNLRIWGDLSYY  272 (430)
Q Consensus       199 ~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~  272 (430)
                      |.++.+|..+.  ++|++|++++|.+.. +|    ..+++|+.|.+.++...  ...+.. ++.+ +|+.|+++++.   
T Consensus       112 n~l~~l~~~~~--~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~l-~L~~L~l~~n~---  183 (332)
T 2ft3_A          112 NHLVEIPPNLP--SSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFEPGA-FDGL-KLNYLRISEAK---  183 (332)
T ss_dssp             SCCCSCCSSCC--TTCCEEECCSSCCCC-CCSGGGSSCSSCCEEECCSCCCBGGGSCTTS-SCSC-CCSCCBCCSSB---
T ss_pred             CcCCccCcccc--ccCCEEECCCCccCc-cCHhHhCCCccCCEEECCCCccccCCCCccc-ccCC-ccCEEECcCCC---
Confidence            66666665544  566667666666665 54    33444444444433321  122233 4444 56666666553   


Q ss_pred             HHHHHHHhcCCCCCCEEEEecCCCCCCceEEEE-EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEE
Q 047903          273 QSLLSQSLCTLTCLESLKLVSESKMPTLSKIVL-VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVL  351 (430)
Q Consensus       273 ~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L  351 (430)
                      ...++..+  .++|+.|++++    ..++.+.. .+..+ ++|+.|++++|.+...+          ......+++|+.|
T Consensus       184 l~~l~~~~--~~~L~~L~l~~----n~i~~~~~~~l~~l-~~L~~L~L~~N~l~~~~----------~~~~~~l~~L~~L  246 (332)
T 2ft3_A          184 LTGIPKDL--PETLNELHLDH----NKIQAIELEDLLRY-SKLYRLGLGHNQIRMIE----------NGSLSFLPTLREL  246 (332)
T ss_dssp             CSSCCSSS--CSSCSCCBCCS----SCCCCCCTTSSTTC-TTCSCCBCCSSCCCCCC----------TTGGGGCTTCCEE
T ss_pred             CCccCccc--cCCCCEEECCC----CcCCccCHHHhcCC-CCCCEEECCCCcCCcCC----------hhHhhCCCCCCEE
Confidence            11122111  14555555553    11221110 23344 55555555555443321          0011234455555


Q ss_pred             EEeeCCCCCceEEcCCccccccEeEEeec
Q 047903          352 HLKSMLWLEEWTMGIGAMPKLECLIINPC  380 (430)
Q Consensus       352 ~l~~~~~l~~~~~~~~~~~~L~~L~l~~c  380 (430)
                      ++++ +.+..++...+.+++|+.|++++|
T Consensus       247 ~L~~-N~l~~lp~~l~~l~~L~~L~l~~N  274 (332)
T 2ft3_A          247 HLDN-NKLSRVPAGLPDLKLLQVVYLHTN  274 (332)
T ss_dssp             ECCS-SCCCBCCTTGGGCTTCCEEECCSS
T ss_pred             ECCC-CcCeecChhhhcCccCCEEECCCC
Confidence            5554 234444433444555555555553

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.84  E-value=1.3e-20  Score=185.17  Aligned_cols=263  Identities=18%  Similarity=0.123  Sum_probs=161.2

Q ss_pred             CCeeEEEEeecCCCccccccccCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecC
Q 047903          118 KNVKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMP  197 (430)
Q Consensus       118 ~~~r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~  197 (430)
                      .+++.|.+. ++....++. ..++|+  +|++++|.++.+| .++++++|++|++++|+++.+|..+    .+|++|+++
T Consensus       111 ~~L~~L~l~-~n~l~~l~~-~~~~L~--~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~----~~L~~L~L~  181 (454)
T 1jl5_A          111 QSLKSLLVD-NNNLKALSD-LPPLLE--YLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP----PSLEFIAAG  181 (454)
T ss_dssp             TTCCEEECC-SSCCSCCCS-CCTTCC--EEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC----TTCCEEECC
T ss_pred             CCCcEEECC-CCccCcccC-CCCCCC--EEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc----ccccEEECc
Confidence            456666665 444443322 135677  8888888888877 5888888888888888888887533    588888888


Q ss_pred             CCCccccchhhccCcccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHH
Q 047903          198 FSYIDHTADEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLS  277 (430)
Q Consensus       198 ~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  277 (430)
                      +|.++.+| +++++++|++|++++|.+.+ +|...++|+.|.+.++...  .+.+ ++.+++|+.|+++++.  .. .++
T Consensus       182 ~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~n~l~--~lp~-~~~l~~L~~L~l~~N~--l~-~l~  253 (454)
T 1jl5_A          182 NNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDLPLSLESIVAGNNILE--ELPE-LQNLPFLTTIYADNNL--LK-TLP  253 (454)
T ss_dssp             SSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCCCTTCCEEECCSSCCS--SCCC-CTTCTTCCEEECCSSC--CS-SCC
T ss_pred             CCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCCcCcccEEECcCCcCC--cccc-cCCCCCCCEEECCCCc--CC-ccc
Confidence            88888888 48888889999999888887 7755567777777766542  3346 7888888899888875  11 111


Q ss_pred             HHhcCCCCCCEEEEecCC------CCCCceEEEE------EcccccCCcceEEEEccccCCcccccccCCCeEE------
Q 047903          278 QSLCTLTCLESLKLVSES------KMPTLSKIVL------VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLT------  339 (430)
Q Consensus       278 ~~l~~l~~L~~L~l~~~~------~~~~L~~L~l------~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~------  339 (430)
                      .   .+++|+.|+++++.      .+++|+.|++      .+..+|++|+.|++++|.+...+... .....+.      
T Consensus       254 ~---~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~-~~L~~L~Ls~N~l  329 (454)
T 1jl5_A          254 D---LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLP-PSLEELNVSNNKL  329 (454)
T ss_dssp             S---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCC-TTCCEEECCSSCC
T ss_pred             c---cccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCc-CcCCEEECCCCcc
Confidence            1   23577777776511      1345666655      12233355666666666544321000 0000000      


Q ss_pred             -EcCCCCCcccEEEEeeCCCCCceEEcCCccccccEeEEeecCCCC--cCCCCCCCC-------------CCCCEEEEec
Q 047903          340 -CGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLK--KMPEQPWCI-------------KSLNKFNCWW  403 (430)
Q Consensus       340 -~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~--~lp~~l~~l-------------~~L~~L~l~~  403 (430)
                       .-...+++|+.|++++ +.+..++.   .+++|++|++++|....  .+|..+..+             ++|+.|++++
T Consensus       330 ~~lp~~~~~L~~L~L~~-N~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~  405 (454)
T 1jl5_A          330 IELPALPPRLERLIASF-NHLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVET  405 (454)
T ss_dssp             SCCCCCCTTCCEEECCS-SCCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------
T ss_pred             ccccccCCcCCEEECCC-Cccccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCC
Confidence             0012357888888887 45666554   47889999999876444  577777777             7899999988


Q ss_pred             Ch
Q 047903          404 PQ  405 (430)
Q Consensus       404 ~~  405 (430)
                      |+
T Consensus       406 N~  407 (454)
T 1jl5_A          406 NP  407 (454)
T ss_dssp             --
T ss_pred             Cc
Confidence            77

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.84  E-value=4.9e-21  Score=198.38  Aligned_cols=273  Identities=16%  Similarity=0.140  Sum_probs=172.5

Q ss_pred             CCCCeeEEEEeecCCCcccccc-c--cCcceEEEEEecCCccccc-ccccccccCCceeecCCCCCcccChHhhhcCCCc
Q 047903          116 SRKNVKRINVFEKQSDFAHLDD-Y--DSHMHSLVLDLGSLVLIHY-LSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNL  191 (430)
Q Consensus       116 ~~~~~r~L~l~~~~~~~~~~~~-~--~~~L~~L~L~l~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L  191 (430)
                      .+.++++|.+. ++.+..++.. +  +++|+  +|++++|.++.+ |..|+++++|++|++++|.++.+|...|+++++|
T Consensus        23 ~~~~l~~L~Ls-~n~l~~~~~~~~~~l~~L~--~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L   99 (680)
T 1ziw_A           23 LPTNITVLNLT-HNQLRRLPAANFTRYSQLT--SLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL   99 (680)
T ss_dssp             SCTTCSEEECC-SSCCCCCCGGGGGGGTTCS--EEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cCCCCcEEECC-CCCCCCcCHHHHhCCCcCc--EEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCC
Confidence            34678999998 6666655543 4  78888  888998888855 4678888999999999998888887544889999


Q ss_pred             cEEecCCCCccccc-hhhccCcccceeecCCcccCCCcC---ccCCCCcccceeecCCCCcchhhhcC--CCCCCceEEE
Q 047903          192 YTLDMPFSYIDHTA-DEFWKMNNLRHLNFGSITLPAHPR---KYCRSLENLNFISALHPCCCTEDILG--RLPNLRNLRI  265 (430)
Q Consensus       192 ~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~lp---~~l~~L~~L~~~~~~~~~~~~~~~l~--~l~~L~~L~l  265 (430)
                      ++|++++|.+..+| ..++++++|++|++++|.+.+..|   +.+++|+.|.+..+......... ++  .+++|++|++
T Consensus       100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~~~L~~L~L  178 (680)
T 1ziw_A          100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE-LDIFANSSLKKLEL  178 (680)
T ss_dssp             SEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHH-HGGGTTCEESEEEC
T ss_pred             CEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHH-hhccccccccEEEC
Confidence            99999998888776 458888999999999988887333   45666666665555433333333 32  4567778877


Q ss_pred             EccccccHHHHHHHhcCC---------------------------CCCCEEEEecCCC----------C--CCceEEEE-
Q 047903          266 WGDLSYYQSLLSQSLCTL---------------------------TCLESLKLVSESK----------M--PTLSKIVL-  305 (430)
Q Consensus       266 ~~~~~~~~~~~~~~l~~l---------------------------~~L~~L~l~~~~~----------~--~~L~~L~l-  305 (430)
                      +++.  .....+..+..+                           ++|+.|+++++.-          +  ++|+.|++ 
T Consensus       179 ~~n~--l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls  256 (680)
T 1ziw_A          179 SSNQ--IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLS  256 (680)
T ss_dssp             TTCC--CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECT
T ss_pred             CCCc--ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECC
Confidence            7764  221222222222                           4566666654110          1  23555555 


Q ss_pred             ----------EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCC-----ceEE----cC
Q 047903          306 ----------VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLE-----EWTM----GI  366 (430)
Q Consensus       306 ----------~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~~~~----~~  366 (430)
                                ++..+ ++|++|++++|.+...+          +.....+++|+.|++.++..-.     .++.    ..
T Consensus       257 ~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~----------~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~  325 (680)
T 1ziw_A          257 YNNLNVVGNDSFAWL-PQLEYFFLEYNNIQHLF----------SHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF  325 (680)
T ss_dssp             TSCCCEECTTTTTTC-TTCCEEECCSCCBSEEC----------TTTTTTCTTCCEEECTTCBCCC------CCEECTTTT
T ss_pred             CCCcCccCcccccCc-ccccEeeCCCCccCccC----------hhhhcCCCCccEEeccchhhhcccccccccccChhhc
Confidence                      23445 66666666666553321          1123456677777776421110     1211    23


Q ss_pred             CccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903          367 GAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       367 ~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  405 (430)
                      +.+++|++|++++|......|..+.++++|++|++++|.
T Consensus       326 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  364 (680)
T 1ziw_A          326 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF  364 (680)
T ss_dssp             TTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred             ccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCc
Confidence            456778888888765333344557777888888877763

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.84  E-value=1.5e-20  Score=184.55  Aligned_cols=239  Identities=15%  Similarity=0.148  Sum_probs=168.7

Q ss_pred             CeeEEEEeecCCCccccccccCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCccEEecC
Q 047903          119 NVKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMP  197 (430)
Q Consensus       119 ~~r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~  197 (430)
                      ..+.+... +.....+|..+.++++  +|++++|.++.++ ..|+++++|++|++++|.++.++...|.++++|++|+|+
T Consensus        44 ~~~~v~c~-~~~l~~iP~~~~~~l~--~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           44 QFSKVICV-RKNLREVPDGISTNTR--LLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             TSCEEECC-SCCCSSCCSCCCTTCS--EEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCCEEEeC-CCCcCcCCCCCCCCCc--EEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            34566666 6667778888888999  9999999999776 689999999999999999998876666999999999999


Q ss_pred             CCCccccchh-hccCcccceeecCCcccCCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEcccccc
Q 047903          198 FSYIDHTADE-FWKMNNLRHLNFGSITLPAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYY  272 (430)
Q Consensus       198 ~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  272 (430)
                      +|.++.+|.. +..+++|++|++++|.+.. +|    ..+++|+.|.+..+.........++..+++|+.|++++|.   
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~---  196 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN---  196 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC---
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccc-cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc---
Confidence            9999999874 8999999999999999887 55    3334444444433222111222114455555555555543   


Q ss_pred             HHHHHHHhcCCCCCCEEEEecCCCCCCceEEEEEcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEE
Q 047903          273 QSLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLH  352 (430)
Q Consensus       273 ~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~  352 (430)
                                                 ++.++ .+..+ ++|+.|+|++|.+...+          +.....+++|+.|+
T Consensus       197 ---------------------------l~~~~-~~~~l-~~L~~L~Ls~N~l~~~~----------~~~~~~l~~L~~L~  237 (440)
T 3zyj_A          197 ---------------------------LREIP-NLTPL-IKLDELDLSGNHLSAIR----------PGSFQGLMHLQKLW  237 (440)
T ss_dssp             ---------------------------CSSCC-CCTTC-SSCCEEECTTSCCCEEC----------TTTTTTCTTCCEEE
T ss_pred             ---------------------------Ccccc-ccCCC-cccCEEECCCCccCccC----------hhhhccCccCCEEE
Confidence                                       22221 23455 78888888888764321          11235678888888


Q ss_pred             EeeCCCCCceEEc-CCccccccEeEEeecCCCCcCCC-CCCCCCCCCEEEEecCh
Q 047903          353 LKSMLWLEEWTMG-IGAMPKLECLIINPCAYLKKMPE-QPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       353 l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~~~  405 (430)
                      +++ +.+..+... ...+++|+.|++++| .++.+|. .+..+++|+.|++++||
T Consensus       238 L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          238 MIQ-SQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             CTT-CCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             CCC-CceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence            887 455555332 356789999999986 4666664 46788999999998865

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.84  E-value=3.1e-21  Score=182.27  Aligned_cols=240  Identities=17%  Similarity=0.141  Sum_probs=189.6

Q ss_pred             CcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCcccc-chhhccCcccceee
Q 047903          140 SHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHT-ADEFWKMNNLRHLN  218 (430)
Q Consensus       140 ~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~  218 (430)
                      .+++  +++++++.++.+|..+.  ++|++|++++|.++.+++..|+++++|++|++++|.++.+ |..++++++|++|+
T Consensus        33 c~l~--~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           33 CHLR--VVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             EETT--EEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred             ccCC--EEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence            3677  99999999999998764  6899999999999988654449999999999999999987 66799999999999


Q ss_pred             cCCcccCCCcC-ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCCC
Q 047903          219 FGSITLPAHPR-KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKM  297 (430)
Q Consensus       219 l~~~~~~~~lp-~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  297 (430)
                      +++|.+.. +| ...++|+.|.+.++......... ++.+++|+.|++.++........+..+..+ +|+.|++++    
T Consensus       109 L~~n~l~~-l~~~~~~~L~~L~l~~n~i~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~----  181 (332)
T 2ft3_A          109 ISKNHLVE-IPPNLPSSLVELRIHDNRIRKVPKGV-FSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE----  181 (332)
T ss_dssp             CCSSCCCS-CCSSCCTTCCEEECCSSCCCCCCSGG-GSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS----
T ss_pred             CCCCcCCc-cCccccccCCEEECCCCccCccCHhH-hCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC----
Confidence            99999997 88 55588888888777654444455 899999999999998622223445566666 899999885    


Q ss_pred             CCceEEEEEcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEE-cCCccccccEeE
Q 047903          298 PTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTM-GIGAMPKLECLI  376 (430)
Q Consensus       298 ~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~  376 (430)
                      ..++.++   ..++++|++|++++|.+...+          ......+++|+.|++++ +.+..++. ..+.+++|+.|+
T Consensus       182 n~l~~l~---~~~~~~L~~L~l~~n~i~~~~----------~~~l~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~  247 (332)
T 2ft3_A          182 AKLTGIP---KDLPETLNELHLDHNKIQAIE----------LEDLLRYSKLYRLGLGH-NQIRMIENGSLSFLPTLRELH  247 (332)
T ss_dssp             SBCSSCC---SSSCSSCSCCBCCSSCCCCCC----------TTSSTTCTTCSCCBCCS-SCCCCCCTTGGGGCTTCCEEE
T ss_pred             CCCCccC---ccccCCCCEEECCCCcCCccC----------HHHhcCCCCCCEEECCC-CcCCcCChhHhhCCCCCCEEE
Confidence            3344332   122278999999999876532          11245688999999998 45666543 345789999999


Q ss_pred             EeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903          377 INPCAYLKKMPEQPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       377 l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  405 (430)
                      +++| .+..+|..+..+++|++|++++|+
T Consensus       248 L~~N-~l~~lp~~l~~l~~L~~L~l~~N~  275 (332)
T 2ft3_A          248 LDNN-KLSRVPAGLPDLKLLQVVYLHTNN  275 (332)
T ss_dssp             CCSS-CCCBCCTTGGGCTTCCEEECCSSC
T ss_pred             CCCC-cCeecChhhhcCccCCEEECCCCC
Confidence            9997 588999999999999999999987

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.83  E-value=4.3e-20  Score=187.39  Aligned_cols=235  Identities=16%  Similarity=0.051  Sum_probs=153.0

Q ss_pred             CCeeEEEEeecCCCccccccccCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecC
Q 047903          118 KNVKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMP  197 (430)
Q Consensus       118 ~~~r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~  197 (430)
                      .+++.|.+. ++.+..++. .+++|+  +|++++|.++.+|.   .+++|++|++++|.++.+|.    .+++|++|+++
T Consensus        61 ~~L~~L~L~-~N~l~~lp~-~l~~L~--~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~  129 (622)
T 3g06_A           61 AHITTLVIP-DNNLTSLPA-LPPELR--TLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIF  129 (622)
T ss_dssp             TTCSEEEEC-SCCCSCCCC-CCTTCC--EEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC----CCTTCCEEECC
T ss_pred             CCCcEEEec-CCCCCCCCC-cCCCCC--EEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC----CCCCcCEEECC
Confidence            456666666 555554444 456666  66666666666665   45666666666666666653    35666666666


Q ss_pred             CCCccccchhhccCcccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHH
Q 047903          198 FSYIDHTADEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLS  277 (430)
Q Consensus       198 ~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  277 (430)
                      +|+++.+|..   +++|++|++++|.+.+ +|..+++|+.|.+.++....  +.   ..+++|+.|++++|.  .. .++
T Consensus       130 ~N~l~~lp~~---l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~--l~---~~~~~L~~L~Ls~N~--l~-~l~  197 (622)
T 3g06_A          130 GNQLTSLPVL---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTS--LP---MLPSGLQELSVSDNQ--LA-SLP  197 (622)
T ss_dssp             SSCCSCCCCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSC--CS-CCC
T ss_pred             CCCCCcCCCC---CCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCC--Cc---ccCCCCcEEECCCCC--CC-CCC
Confidence            6666666653   3666667777666665 66545555555554443211  11   234666777776664  11 111


Q ss_pred             HHhcCCCCCCEEEEecCCCCCCceEEEEEcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCC
Q 047903          278 QSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSML  357 (430)
Q Consensus       278 ~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  357 (430)
                         ..+++|+.|++++    ..++.+    ...+++|+.|++++|.+...|              ..+++|+.|++++ +
T Consensus       198 ---~~~~~L~~L~L~~----N~l~~l----~~~~~~L~~L~Ls~N~L~~lp--------------~~l~~L~~L~Ls~-N  251 (622)
T 3g06_A          198 ---TLPSELYKLWAYN----NRLTSL----PALPSGLKELIVSGNRLTSLP--------------VLPSELKELMVSG-N  251 (622)
T ss_dssp             ---CCCTTCCEEECCS----SCCSSC----CCCCTTCCEEECCSSCCSCCC--------------CCCTTCCEEECCS-S
T ss_pred             ---CccchhhEEECcC----Cccccc----CCCCCCCCEEEccCCccCcCC--------------CCCCcCcEEECCC-C
Confidence               1235666666653    223322    122288999999999875432              4678999999998 5


Q ss_pred             CCCceEEcCCccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903          358 WLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       358 ~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  405 (430)
                      .+..++.   .+++|+.|++++| .++.+|..+.++++|+.|++++|+
T Consensus       252 ~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          252 RLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             CCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred             CCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence            6777665   6899999999997 578999999999999999999998

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.83  E-value=2e-20  Score=184.30  Aligned_cols=238  Identities=16%  Similarity=0.115  Sum_probs=166.4

Q ss_pred             eeEEEEeecCCCccccccccCcceEEEEEecCCccccc-ccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCC
Q 047903          120 VKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHY-LSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPF  198 (430)
Q Consensus       120 ~r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~  198 (430)
                      .+.+... +.....+|..+.++++  +|++++|.++.+ |..|+++++|++|++++|.++.++...|.++++|++|+|++
T Consensus        56 ~~~v~c~-~~~l~~iP~~~~~~l~--~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           56 FSKVVCT-RRGLSEVPQGIPSNTR--YLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SCEEECC-SSCCSSCCSCCCTTCS--EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CcEEEEC-CCCcCccCCCCCCCcc--EEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            4556666 6666678877788999  999999999866 47899999999999999999988755559999999999999


Q ss_pred             CCccccchh-hccCcccceeecCCcccCCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccH
Q 047903          199 SYIDHTADE-FWKMNNLRHLNFGSITLPAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQ  273 (430)
Q Consensus       199 ~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  273 (430)
                      |.++.+|.. +.++++|++|++++|.+.. +|    ..+++|+.|.+..+..........+..+++|+.|++++|.    
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~----  207 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN----  207 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC----
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcce-eCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc----
Confidence            999988876 8889999999999999887 55    3334444444433322111111114455555555555443    


Q ss_pred             HHHHHHhcCCCCCCEEEEecCCCCCCceEEEEEcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEE
Q 047903          274 SLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHL  353 (430)
Q Consensus       274 ~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  353 (430)
                                                ++.+. .+..+ ++|+.|++++|.+...+          +.....+++|+.|++
T Consensus       208 --------------------------l~~~~-~~~~l-~~L~~L~Ls~N~l~~~~----------~~~~~~l~~L~~L~L  249 (452)
T 3zyi_A          208 --------------------------IKDMP-NLTPL-VGLEELEMSGNHFPEIR----------PGSFHGLSSLKKLWV  249 (452)
T ss_dssp             --------------------------CSSCC-CCTTC-TTCCEEECTTSCCSEEC----------GGGGTTCTTCCEEEC
T ss_pred             --------------------------ccccc-ccccc-ccccEEECcCCcCcccC----------cccccCccCCCEEEe
Confidence                                      22111 23455 78888888888764421          112356788888888


Q ss_pred             eeCCCCCceEE-cCCccccccEeEEeecCCCCcCCC-CCCCCCCCCEEEEecCh
Q 047903          354 KSMLWLEEWTM-GIGAMPKLECLIINPCAYLKKMPE-QPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       354 ~~~~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~~~  405 (430)
                      ++ +.+..+.. ....+++|+.|++++| .++.+|. .+..+++|++|++++||
T Consensus       250 ~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          250 MN-SQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             TT-SCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             CC-CcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence            87 44555432 2356889999999987 4667664 46788999999998865

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.83  E-value=8.7e-21  Score=192.34  Aligned_cols=124  Identities=18%  Similarity=0.141  Sum_probs=72.9

Q ss_pred             CCCeeEEEEeecCCCccccc-cc--cCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCcc
Q 047903          117 RKNVKRINVFEKQSDFAHLD-DY--DSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLY  192 (430)
Q Consensus       117 ~~~~r~L~l~~~~~~~~~~~-~~--~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~  192 (430)
                      +..+++|++. ++.+..+.. .+  +++|+  +|++++|.++.++ ..|+++++|++|++++|.++.+|+..|+++++|+
T Consensus        27 ~~~l~~L~Ls-~n~l~~~~~~~~~~l~~L~--~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  103 (570)
T 2z63_A           27 PFSTKNLDLS-FNPLRHLGSYSFFSFPELQ--VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ  103 (570)
T ss_dssp             CSSCCEEECC-SCCCCEECTTTTTTCSSCC--EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred             cccccEEEcc-CCccCccChhHhhCCCCce--EEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccc
Confidence            4456667666 555443332 33  66666  6666666666554 4566666666666666666666543336666666


Q ss_pred             EEecCCCCccccch-hhccCcccceeecCCcccCC-CcC---ccCCCCcccceeec
Q 047903          193 TLDMPFSYIDHTAD-EFWKMNNLRHLNFGSITLPA-HPR---KYCRSLENLNFISA  243 (430)
Q Consensus       193 ~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~-~lp---~~l~~L~~L~~~~~  243 (430)
                      +|++++|.++.+|. .++++++|++|++++|.+.. .+|   +.+++|+.|.+.++
T Consensus       104 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n  159 (570)
T 2z63_A          104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN  159 (570)
T ss_dssp             EEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC
Confidence            66666666666654 36666666666666666654 234   34455555544433

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.83  E-value=1.7e-20  Score=191.71  Aligned_cols=263  Identities=14%  Similarity=0.092  Sum_probs=149.0

Q ss_pred             CCCeeEEEEeecCCCccccc-cc--cCcceEEEEEecCCccccc-ccccccccCCceeecCCCCCccc-ChHhhhcCCCc
Q 047903          117 RKNVKRINVFEKQSDFAHLD-DY--DSHMHSLVLDLGSLVLIHY-LSGIENLFLLRYLKLNIPSLKSL-PSPLLSNLLNL  191 (430)
Q Consensus       117 ~~~~r~L~l~~~~~~~~~~~-~~--~~~L~~L~L~l~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~l-p~~i~~~L~~L  191 (430)
                      +.++++|.+. ++.+..++. .+  +++|+  +|++++|.++.+ |..|+++++|++|++++|.++.+ |..+ +++++|
T Consensus        31 ~~~l~~L~Ls-~n~l~~~~~~~~~~l~~L~--~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L  106 (606)
T 3vq2_A           31 PSSTKNIDLS-FNPLKILKSYSFSNFSELQ--WLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF-SGLTSL  106 (606)
T ss_dssp             CTTCCEEECT-TSCCCEECTTTTTTCTTCC--EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSS-TTCTTC
T ss_pred             CCCcCEEECC-CCCcCEeChhhccCCccCc--EEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhc-CCcccC
Confidence            3556666666 554444433 33  55666  666666666654 34566666666666666666665 3444 666666


Q ss_pred             cEEecCCCCccccc-hhhccCcccceeecCCcccCC-CcC---ccCCCCcccceeecCCCCcchhhhcCCCCC----Cce
Q 047903          192 YTLDMPFSYIDHTA-DEFWKMNNLRHLNFGSITLPA-HPR---KYCRSLENLNFISALHPCCCTEDILGRLPN----LRN  262 (430)
Q Consensus       192 ~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~-~lp---~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~----L~~  262 (430)
                      ++|++++|.+..+| ..++++++|++|++++|.+.. .+|   +.+++|+.|.+.++......+.. ++.+++    +..
T Consensus       107 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~~l~~  185 (606)
T 3vq2_A          107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND-LQFLRENPQVNLS  185 (606)
T ss_dssp             CEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTT-THHHHHCTTCCCE
T ss_pred             CEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhh-hhhhhccccccce
Confidence            66666666666555 346666666666666666654 245   44555555554444332222222 333332    235


Q ss_pred             EEEEccccccHHHHHHHhcCCCCCCEEEEecCCC-----------CCCceEEEEE-------------------------
Q 047903          263 LRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESK-----------MPTLSKIVLV-------------------------  306 (430)
Q Consensus       263 L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-----------~~~L~~L~l~-------------------------  306 (430)
                      |+++++.  .. .++.......+|+.|+++++.-           +++++.+.++                         
T Consensus       186 L~l~~n~--l~-~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~  262 (606)
T 3vq2_A          186 LDMSLNP--ID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT  262 (606)
T ss_dssp             EECTTCC--CC-EECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSE
T ss_pred             eeccCCC--cc-eeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhcc
Confidence            6666554  11 1122222223677777765210           2333333321                         


Q ss_pred             ------------------cccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEcCCc
Q 047903          307 ------------------EYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGA  368 (430)
Q Consensus       307 ------------------~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  368 (430)
                                        +..+ ++|+.|++++|.+...+            ....+++|+.|+++++. +..++ .. .
T Consensus       263 l~~l~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~l~------------~l~~~~~L~~L~l~~n~-l~~lp-~~-~  326 (606)
T 3vq2_A          263 IDEFRLTYTNDFSDDIVKFHCL-ANVSAMSLAGVSIKYLE------------DVPKHFKWQSLSIIRCQ-LKQFP-TL-D  326 (606)
T ss_dssp             EEEEEECCCTTCCGGGGSCGGG-TTCSEEEEESCCCCCCC------------CCCTTCCCSEEEEESCC-CSSCC-CC-C
T ss_pred             HhheeccccccccccccccccC-CCCCEEEecCccchhhh------------hccccccCCEEEccccc-Ccccc-cC-C
Confidence                              2234 56677777776653321            34567788888888754 46666 33 7


Q ss_pred             cccccEeEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903          369 MPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       369 ~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  405 (430)
                      +++|++|++.+|..+..+  .+..+++|++|++++|.
T Consensus       327 l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~  361 (606)
T 3vq2_A          327 LPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNA  361 (606)
T ss_dssp             CSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSC
T ss_pred             CCccceeeccCCcCccch--hhccCCCCCEEECcCCc
Confidence            888888888888666555  35678888888888775

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.83  E-value=7.7e-21  Score=192.73  Aligned_cols=114  Identities=21%  Similarity=0.203  Sum_probs=88.6

Q ss_pred             CCCCCCCCCCeeEEEEeecCCCcccccc-c--cCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhh
Q 047903          110 GDPKGKSRKNVKRINVFEKQSDFAHLDD-Y--DSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLL  185 (430)
Q Consensus       110 ~~~~~~~~~~~r~L~l~~~~~~~~~~~~-~--~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~  185 (430)
                      ....+...+++++|.+. ++.+..++.. +  +++|+  +|++++|.++.++ ..|+++++|++|++++|.++.+|...|
T Consensus        44 ~~~~~~~l~~L~~L~Ls-~n~i~~i~~~~~~~l~~L~--~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~  120 (570)
T 2z63_A           44 GSYSFFSFPELQVLDLS-RCEIQTIEDGAYQSLSHLS--TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI  120 (570)
T ss_dssp             CTTTTTTCSSCCEEECT-TCCCCEECTTTTTTCTTCC--EEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSC
T ss_pred             ChhHhhCCCCceEEECC-CCcCCccCcccccCchhCC--EEeCcCCcCCccCHhhhcCccccccccccccccccCCCccc
Confidence            33344567788899988 6666655443 4  77888  8888988888665 678888889999998888888865323


Q ss_pred             hcCCCccEEecCCCCccc--cchhhccCcccceeecCCcccCC
Q 047903          186 SNLLNLYTLDMPFSYIDH--TADEFWKMNNLRHLNFGSITLPA  226 (430)
Q Consensus       186 ~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~l~~~~~~~  226 (430)
                      +++++|++|++++|.+..  +|..++++++|++|++++|.+..
T Consensus       121 ~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~  163 (570)
T 2z63_A          121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  163 (570)
T ss_dssp             TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE
T ss_pred             cccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce
Confidence            888889999998887775  67888888888888888888776

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.83  E-value=2.3e-20  Score=191.40  Aligned_cols=123  Identities=17%  Similarity=0.120  Sum_probs=88.4

Q ss_pred             CCCCeeEEEEeecCCCccccc-cc--cCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCc
Q 047903          116 SRKNVKRINVFEKQSDFAHLD-DY--DSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNL  191 (430)
Q Consensus       116 ~~~~~r~L~l~~~~~~~~~~~-~~--~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L  191 (430)
                      .+..+++|.+. .+.+..+++ .+  +++|+  +|+|++|.++.+| .+|+++++|++|+|++|+++.+|+..|+++++|
T Consensus        50 lp~~~~~LdLs-~N~i~~l~~~~f~~l~~L~--~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L  126 (635)
T 4g8a_A           50 LPFSTKNLDLS-FNPLRHLGSYSFFSFPELQ--VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL  126 (635)
T ss_dssp             SCTTCCEEECT-TSCCCEECTTTTTTCTTCC--EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTC
T ss_pred             CCcCCCEEEee-CCCCCCCCHHHHhCCCCCC--EEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCC
Confidence            35578888888 666666654 34  77777  8888888888776 467788888888888888888877666888888


Q ss_pred             cEEecCCCCccccchh-hccCcccceeecCCcccCCC-cC---ccCCCCccccee
Q 047903          192 YTLDMPFSYIDHTADE-FWKMNNLRHLNFGSITLPAH-PR---KYCRSLENLNFI  241 (430)
Q Consensus       192 ~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~-lp---~~l~~L~~L~~~  241 (430)
                      ++|++++|+++.+|.. ++++++|++|++++|.+... +|   +.+++|+.|.+.
T Consensus       127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~  181 (635)
T 4g8a_A          127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS  181 (635)
T ss_dssp             CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred             CEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhccc
Confidence            8888888887777654 77788888888888777651 33   445555555443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.83  E-value=1.2e-19  Score=192.06  Aligned_cols=157  Identities=20%  Similarity=0.228  Sum_probs=118.4

Q ss_pred             cCCCCCCCCCCeeEEEEeecC-CCccc-cccc--cCcceEEEEEecCCccccc-ccccccccCCceeecCCCCCcc-cCh
Q 047903          109 FGDPKGKSRKNVKRINVFEKQ-SDFAH-LDDY--DSHMHSLVLDLGSLVLIHY-LSGIENLFLLRYLKLNIPSLKS-LPS  182 (430)
Q Consensus       109 ~~~~~~~~~~~~r~L~l~~~~-~~~~~-~~~~--~~~L~~L~L~l~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~-lp~  182 (430)
                      +....+....+++.|.+. ++ ....+ ++.+  +++|+  +|++++|.+..+ |..|+++++|++|++++|.++. +|.
T Consensus        39 i~~~~~~~l~~L~~LdLs-~n~~~~~i~~~~f~~L~~L~--~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~  115 (844)
T 3j0a_A           39 VTASSFPFLEQLQLLELG-SQYTPLTIDKEAFRNLPNLR--ILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLK  115 (844)
T ss_dssp             ECSSSCSSCCSCSEEEEC-TTCCCCEECTTTTSSCTTCC--EEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCST
T ss_pred             cChhHCcccccCeEEeCC-CCCCccccCHHHhcCCCCCC--EEECCCCcCcccCHhHccCCcccCEeeCcCCCCCccccc
Confidence            444455678889999999 55 44445 4555  88899  999999999865 7899999999999999999985 455


Q ss_pred             H-hhhcCCCccEEecCCCCccccc--hhhccCcccceeecCCcccCCCcC---ccC--CCCcccceeecCCCCcchhhhc
Q 047903          183 P-LLSNLLNLYTLDMPFSYIDHTA--DEFWKMNNLRHLNFGSITLPAHPR---KYC--RSLENLNFISALHPCCCTEDIL  254 (430)
Q Consensus       183 ~-i~~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~lp---~~l--~~L~~L~~~~~~~~~~~~~~~l  254 (430)
                      . .|+++++|++|++++|.+..++  ..++++++|++|++++|.+.+..|   ..+  ++|+.|.+..+......+.. +
T Consensus       116 ~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~-~  194 (844)
T 3j0a_A          116 DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVD-W  194 (844)
T ss_dssp             TCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCC-C
T ss_pred             CccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccc-h
Confidence            4 2399999999999999888663  569999999999999999987444   233  67777777665543333333 4


Q ss_pred             CCCCC------CceEEEEccc
Q 047903          255 GRLPN------LRNLRIWGDL  269 (430)
Q Consensus       255 ~~l~~------L~~L~l~~~~  269 (430)
                      +.+++      |+.|+++++.
T Consensus       195 ~~~~~~~~~~~L~~L~Ls~n~  215 (844)
T 3j0a_A          195 GKCMNPFRNMVLEILDVSGNG  215 (844)
T ss_dssp             CSSSCTTTTCCBSEEBCSSCC
T ss_pred             hhcCCccccCceeEEecCCCc
Confidence            44443      8888888774

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.83  E-value=3.2e-20  Score=187.36  Aligned_cols=192  Identities=17%  Similarity=0.135  Sum_probs=151.9

Q ss_pred             cCCCccccccccCcceEEEEEecCCccccc-ccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccch
Q 047903          128 KQSDFAHLDDYDSHMHSLVLDLGSLVLIHY-LSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTAD  206 (430)
Q Consensus       128 ~~~~~~~~~~~~~~L~~L~L~l~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~  206 (430)
                      ++....+|..+.++++  +|++++|.++.+ |..|+++++|++|++++|.++.+++..|+++++|++|++++|.+..+|.
T Consensus        14 ~~~l~~ip~~~~~~L~--~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~   91 (549)
T 2z81_A           14 SRSFTSIPSGLTAAMK--SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS   91 (549)
T ss_dssp             TSCCSSCCSCCCTTCC--EEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH
T ss_pred             CCccccccccCCCCcc--EEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH
Confidence            4556667777788999  999999999966 4789999999999999999998875544999999999999999998877


Q ss_pred             h-hccCcccceeecCCcccCC-CcC---ccCCCCcccceeecCCCCcch-hhhcCCCCCCceEEEEccccccHHHHHHHh
Q 047903          207 E-FWKMNNLRHLNFGSITLPA-HPR---KYCRSLENLNFISALHPCCCT-EDILGRLPNLRNLRIWGDLSYYQSLLSQSL  280 (430)
Q Consensus       207 ~-i~~L~~L~~L~l~~~~~~~-~lp---~~l~~L~~L~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l  280 (430)
                      . ++++++|++|++++|.+.. .+|   +.+++|+.|.+.++......+ .. ++.+++|++|++.++.  .....+..+
T Consensus        92 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~-~~~l~~L~~L~L~~n~--l~~~~~~~l  168 (549)
T 2z81_A           92 SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID-FAGLTSLNELEIKALS--LRNYQSQSL  168 (549)
T ss_dssp             HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTT-TTTCCEEEEEEEEETT--CCEECTTTT
T ss_pred             HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhh-hhcccccCeeeccCCc--ccccChhhh
Confidence            6 9999999999999999986 144   678888888888776323333 45 8999999999999987  555566778


Q ss_pred             cCCCCCCEEEEecCC----------CCCCceEEEE---Ecc-----------cccCCcceEEEEccccC
Q 047903          281 CTLTCLESLKLVSES----------KMPTLSKIVL---VEY-----------QFPPRLTHLSFSNTELM  325 (430)
Q Consensus       281 ~~l~~L~~L~l~~~~----------~~~~L~~L~l---~~~-----------~lp~~L~~L~L~~~~l~  325 (430)
                      ..+++|+.|+++.+.          .+++|+.|++   .+.           .+ ++|+.|++++|.+.
T Consensus       169 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~-~~L~~L~l~~n~l~  236 (549)
T 2z81_A          169 KSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVS-SPMKKLAFRGSVLT  236 (549)
T ss_dssp             TTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCC-CCCCEEEEESCEEE
T ss_pred             hccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhh-hcccceeccccccc
Confidence            889999999998621          1567777776   111           23 56777777766543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.82  E-value=6.8e-20  Score=180.28  Aligned_cols=231  Identities=18%  Similarity=0.108  Sum_probs=166.3

Q ss_pred             cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceee
Q 047903          139 DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLN  218 (430)
Q Consensus       139 ~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~  218 (430)
                      +++|+  +|++++|.++.+| .++.+++|++|++++|.++.+|  + +++++|++|++++|.++.+|  ++++++|++|+
T Consensus        41 l~~L~--~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~-~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~  112 (457)
T 3bz5_A           41 LATLT--SLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--L-SQNTNLTYLACDSNKLTNLD--VTPLTKLTYLN  112 (457)
T ss_dssp             HTTCC--EEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--C-TTCTTCSEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred             cCCCC--EEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--c-ccCCCCCEEECcCCCCceee--cCCCCcCCEEE
Confidence            78888  9999999999887 6899999999999999999987  6 99999999999999999886  88999999999


Q ss_pred             cCCcccCCCcC-ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCC--
Q 047903          219 FGSITLPAHPR-KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSES--  295 (430)
Q Consensus       219 l~~~~~~~~lp-~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~--  295 (430)
                      +++|.+.+ +| +.+++|+.|.+.++....  + . ++.+++|+.|+++++.  ....+  .+..+++|+.|+++++.  
T Consensus       113 L~~N~l~~-l~~~~l~~L~~L~l~~N~l~~--l-~-l~~l~~L~~L~l~~n~--~~~~~--~~~~l~~L~~L~ls~n~l~  183 (457)
T 3bz5_A          113 CDTNKLTK-LDVSQNPLLTYLNCARNTLTE--I-D-VSHNTQLTELDCHLNK--KITKL--DVTPQTQLTTLDCSFNKIT  183 (457)
T ss_dssp             CCSSCCSC-CCCTTCTTCCEEECTTSCCSC--C-C-CTTCTTCCEEECTTCS--CCCCC--CCTTCTTCCEEECCSSCCC
T ss_pred             CCCCcCCe-ecCCCCCcCCEEECCCCccce--e-c-cccCCcCCEEECCCCC--ccccc--ccccCCcCCEEECCCCccc
Confidence            99999998 88 888888888777665433  2 5 7889999999999985  22222  36788999999998621  


Q ss_pred             -----CCCCceEEEE--------EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCce
Q 047903          296 -----KMPTLSKIVL--------VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEW  362 (430)
Q Consensus       296 -----~~~~L~~L~l--------~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  362 (430)
                           .+++|+.|++        .+..+ ++|+.|++++|.+...|             ...+++|+.|++++ +.+..+
T Consensus       184 ~l~l~~l~~L~~L~l~~N~l~~~~l~~l-~~L~~L~Ls~N~l~~ip-------------~~~l~~L~~L~l~~-N~l~~~  248 (457)
T 3bz5_A          184 ELDVSQNKLLNRLNCDTNNITKLDLNQN-IQLTFLDCSSNKLTEID-------------VTPLTQLTYFDCSV-NPLTEL  248 (457)
T ss_dssp             CCCCTTCTTCCEEECCSSCCSCCCCTTC-TTCSEEECCSSCCSCCC-------------CTTCTTCSEEECCS-SCCSCC
T ss_pred             eeccccCCCCCEEECcCCcCCeeccccC-CCCCEEECcCCcccccC-------------ccccCCCCEEEeeC-CcCCCc
Confidence                 0344555544        23344 55555555555543211             34566777777766 344444


Q ss_pred             EEcCCcccccc----------EeEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903          363 TMGIGAMPKLE----------CLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       363 ~~~~~~~~~L~----------~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  405 (430)
                      +  .+.+++|+          .|++++|..+..+|  ...+++|+.|++++|+
T Consensus       249 ~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~  297 (457)
T 3bz5_A          249 D--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNT  297 (457)
T ss_dssp             C--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCT
T ss_pred             C--HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCc
Confidence            3  23344443          33444444344444  3456777777777776

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.81  E-value=6e-21  Score=176.24  Aligned_cols=213  Identities=17%  Similarity=0.136  Sum_probs=145.1

Q ss_pred             eEEEEeecCCCccccccccCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCccc-ChHhhhcCCCccEEecCC
Q 047903          121 KRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSL-PSPLLSNLLNLYTLDMPF  198 (430)
Q Consensus       121 r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~i~~~L~~L~~L~L~~  198 (430)
                      +.+... +.....+|..+.++++  .|++++|.++.++ ..|+.+++|++|++++|.++.+ |..+ +++++|++|++++
T Consensus        14 ~~~~c~-~~~l~~ip~~~~~~l~--~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCP-QQGLQAVPVGIPAASQ--RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF-TGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECC-SSCCSSCCTTCCTTCS--EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCS
T ss_pred             eEEEcC-cCCcccCCcCCCCCce--EEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhc-CCccCCCEEeCCC
Confidence            455555 5556667776678888  8899999988776 5688899999999999998887 4445 9999999999999


Q ss_pred             CC-cccc-chhhccCcccceeecCCcccCCCcC---ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccH
Q 047903          199 SY-IDHT-ADEFWKMNNLRHLNFGSITLPAHPR---KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQ  273 (430)
Q Consensus       199 ~~-l~~l-p~~i~~L~~L~~L~l~~~~~~~~lp---~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  273 (430)
                      |. +..+ |..+.++++|++|++++|.+....|   ..+++|+.|.+.++......... ++.+++|++|+++++.  ..
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~--l~  166 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT-FRDLGNLTHLFLHGNR--IS  166 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSC--CC
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhH-hccCCCccEEECCCCc--cc
Confidence            95 8877 5568889999999999998887223   44555555555554433333344 6777888888888775  22


Q ss_pred             HHHHHHhcCCCCCCEEEEecCCCCCCceEEEE-EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEE
Q 047903          274 SLLSQSLCTLTCLESLKLVSESKMPTLSKIVL-VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLH  352 (430)
Q Consensus       274 ~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~  352 (430)
                      ...+..+..+++|+.|++++    ..+..+.. ++..+ ++|+.|++++|.+...+          ......+++|+.|+
T Consensus       167 ~~~~~~~~~l~~L~~L~l~~----n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~----------~~~~~~l~~L~~L~  231 (285)
T 1ozn_A          167 SVPERAFRGLHSLDRLLLHQ----NRVAHVHPHAFRDL-GRLMTLYLFANNLSALP----------TEALAPLRALQYLR  231 (285)
T ss_dssp             EECTTTTTTCTTCCEEECCS----SCCCEECTTTTTTC-TTCCEEECCSSCCSCCC----------HHHHTTCTTCCEEE
T ss_pred             ccCHHHhcCccccCEEECCC----CcccccCHhHccCc-ccccEeeCCCCcCCcCC----------HHHcccCcccCEEe
Confidence            22223466677777777764    33443321 34556 77777777777665432          01124567777777


Q ss_pred             Eee
Q 047903          353 LKS  355 (430)
Q Consensus       353 l~~  355 (430)
                      +++
T Consensus       232 l~~  234 (285)
T 1ozn_A          232 LND  234 (285)
T ss_dssp             CCS
T ss_pred             ccC
Confidence            776

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.81  E-value=5.9e-20  Score=190.27  Aligned_cols=266  Identities=18%  Similarity=0.154  Sum_probs=180.6

Q ss_pred             EEEEeecCCCccccccccCcceEEEEEecCCccccccc-ccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCC
Q 047903          122 RINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLS-GIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSY  200 (430)
Q Consensus       122 ~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~  200 (430)
                      .+... +.....+|..+.++++  +|++++|.++.+|. .|+++++|++|++++|.++.+++..|+++++|++|++++|.
T Consensus         8 ~~~cs-~~~L~~ip~~~~~~l~--~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~   84 (680)
T 1ziw_A            8 VADCS-HLKLTQVPDDLPTNIT--VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE   84 (680)
T ss_dssp             EEECC-SSCCSSCCSCSCTTCS--EEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred             eeECC-CCCccccccccCCCCc--EEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence            34455 5556667777778999  99999999998874 69999999999999999998855555999999999999999


Q ss_pred             ccccchh-hccCcccceeecCCcccCCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHH
Q 047903          201 IDHTADE-FWKMNNLRHLNFGSITLPAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSL  275 (430)
Q Consensus       201 l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  275 (430)
                      ++.+|.. ++++++|++|++++|.+.+ +|    +.+++|+.|.+..+......+.. ++.+++|++|++.++.  ....
T Consensus        85 l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~--l~~~  160 (680)
T 1ziw_A           85 LSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGT-QVQLENLQELLLSNNK--IQAL  160 (680)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCCCC-CCSCTTTTCTTCCEEECCSSCCSCCCCCS-SSCCTTCCEEECCSSC--CCCB
T ss_pred             cCccChhhhccCCCCCEEECCCCccCc-cChhHccccCCCCEEECCCCcccccCchh-hcccccCCEEEccCCc--cccc
Confidence            9999974 9999999999999999988 66    45667777766666544455566 8899999999999986  3333


Q ss_pred             HHHHh--cCCCCCCEEEEecCC---C-------CCCceEE---------------------------EE-----------
Q 047903          276 LSQSL--CTLTCLESLKLVSES---K-------MPTLSKI---------------------------VL-----------  305 (430)
Q Consensus       276 ~~~~l--~~l~~L~~L~l~~~~---~-------~~~L~~L---------------------------~l-----------  305 (430)
                      .+..+  ..+++|+.|+++++.   .       +++|+.+                           ++           
T Consensus       161 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~  240 (680)
T 1ziw_A          161 KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT  240 (680)
T ss_dssp             CHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT
T ss_pred             CHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh
Confidence            33333  356899999998621   0       2233333                           32           


Q ss_pred             Eccccc-CCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceE-EcCCccccccEeEEeecCCC
Q 047903          306 VEYQFP-PRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWT-MGIGAMPKLECLIINPCAYL  383 (430)
Q Consensus       306 ~~~~lp-~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~c~~l  383 (430)
                      ++..++ ++|+.|++++|.+...+          +.....+++|++|+++++ .+..+. ...+.+++|+.|++.+|..-
T Consensus       241 ~~~~l~~~~L~~L~Ls~n~l~~~~----------~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~~~~~  309 (680)
T 1ziw_A          241 TFLGLKWTNLTMLDLSYNNLNVVG----------NDSFAWLPQLEYFFLEYN-NIQHLFSHSLHGLFNVRYLNLKRSFTK  309 (680)
T ss_dssp             TTGGGGGSCCCEEECTTSCCCEEC----------TTTTTTCTTCCEEECCSC-CBSEECTTTTTTCTTCCEEECTTCBCC
T ss_pred             HhhccCcCCCCEEECCCCCcCccC----------cccccCcccccEeeCCCC-ccCccChhhhcCCCCccEEeccchhhh
Confidence            111220 12555555555432211          011345677777777763 344332 23355777777777654311


Q ss_pred             C-----cCCC----CCCCCCCCCEEEEecCh
Q 047903          384 K-----KMPE----QPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       384 ~-----~lp~----~l~~l~~L~~L~l~~~~  405 (430)
                      .     .+|.    .+..+++|++|++++|.
T Consensus       310 ~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~  340 (680)
T 1ziw_A          310 QSISLASLPKIDDFSFQWLKCLEHLNMEDND  340 (680)
T ss_dssp             C------CCEECTTTTTTCTTCCEEECCSCC
T ss_pred             cccccccccccChhhcccCCCCCEEECCCCc
Confidence            1     2332    56677888888888775

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.81  E-value=1.8e-20  Score=175.81  Aligned_cols=212  Identities=16%  Similarity=0.125  Sum_probs=113.6

Q ss_pred             cCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCccccee
Q 047903          139 DSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHL  217 (430)
Q Consensus       139 ~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L  217 (430)
                      +++|+  .|++++|.++.++ ..++.+++|++|++++|.++.+++ + +.+++|++|++++|.++.+|.    .++|++|
T Consensus        33 ~~~L~--~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~-~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L  104 (317)
T 3o53_A           33 AWNVK--ELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-L-ESLSTLRTLDLNNNYVQELLV----GPSIETL  104 (317)
T ss_dssp             GGGCS--EEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-E-TTCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred             CCCCC--EEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-h-hhcCCCCEEECcCCccccccC----CCCcCEE
Confidence            34555  6666666655443 455566666666666666554443 3 666666666666665555442    2556666


Q ss_pred             ecCCcccCCCcC-ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCC
Q 047903          218 NFGSITLPAHPR-KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESK  296 (430)
Q Consensus       218 ~l~~~~~~~~lp-~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  296 (430)
                      ++++|.+.. ++ ..+++|                         ++|+++++.  .....+..+..+++|+.|++++   
T Consensus       105 ~l~~n~l~~-~~~~~~~~L-------------------------~~L~l~~N~--l~~~~~~~~~~l~~L~~L~Ls~---  153 (317)
T 3o53_A          105 HAANNNISR-VSCSRGQGK-------------------------KNIYLANNK--ITMLRDLDEGCRSRVQYLDLKL---  153 (317)
T ss_dssp             ECCSSCCSE-EEECCCSSC-------------------------EEEECCSSC--CCSGGGBCTGGGSSEEEEECTT---
T ss_pred             ECCCCccCC-cCccccCCC-------------------------CEEECCCCC--CCCccchhhhccCCCCEEECCC---
Confidence            666665555 33 344444                         444444443  2222222333444455555442   


Q ss_pred             CCCceEEEE-E-cccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEcCCccccccE
Q 047903          297 MPTLSKIVL-V-EYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLEC  374 (430)
Q Consensus       297 ~~~L~~L~l-~-~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~  374 (430)
                       ..+..+.. . ...+ ++|++|++++|.+...+            ....+++|++|++++ +.+..++.....+++|+.
T Consensus       154 -N~l~~~~~~~~~~~l-~~L~~L~L~~N~l~~~~------------~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~  218 (317)
T 3o53_A          154 -NEIDTVNFAELAASS-DTLEHLNLQYNFIYDVK------------GQVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTW  218 (317)
T ss_dssp             -SCCCEEEGGGGGGGT-TTCCEEECTTSCCCEEE------------CCCCCTTCCEEECCS-SCCCEECGGGGGGTTCSE
T ss_pred             -CCCCcccHHHHhhcc-CcCCEEECCCCcCcccc------------cccccccCCEEECCC-CcCCcchhhhcccCcccE
Confidence             23333321 1 1244 66666666666553221            122366677777666 445555544555667777


Q ss_pred             eEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903          375 LIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       375 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  405 (430)
                      |++++| .++.+|..+..+++|+.|++++|+
T Consensus       219 L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~  248 (317)
T 3o53_A          219 ISLRNN-KLVLIEKALRFSQNLEHFDLRGNG  248 (317)
T ss_dssp             EECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred             EECcCC-cccchhhHhhcCCCCCEEEccCCC
Confidence            777765 456666666667777777777665

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.80  E-value=2.9e-20  Score=177.13  Aligned_cols=247  Identities=16%  Similarity=0.139  Sum_probs=187.7

Q ss_pred             CCCCeeEEEEeecCCCccccc-cc--cCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCc
Q 047903          116 SRKNVKRINVFEKQSDFAHLD-DY--DSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNL  191 (430)
Q Consensus       116 ~~~~~r~L~l~~~~~~~~~~~-~~--~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L  191 (430)
                      ..+++++|.+. ++.+..++. .+  +++|+  +|++++|.++.++ ..|+++++|++|++++|.++.+|...|+++++|
T Consensus        50 ~~~~L~~L~l~-~n~i~~~~~~~~~~l~~L~--~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  126 (353)
T 2z80_A           50 LTEAVKSLDLS-NNRITYISNSDLQRCVNLQ--ALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSL  126 (353)
T ss_dssp             CCTTCCEEECT-TSCCCEECTTTTTTCTTCC--EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTC
T ss_pred             ccccCcEEECC-CCcCcccCHHHhccCCCCC--EEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccC
Confidence            34589999999 777776665 44  88999  9999999999775 679999999999999999999998855999999


Q ss_pred             cEEecCCCCccccch--hhccCcccceeecCCcc-cCCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEE
Q 047903          192 YTLDMPFSYIDHTAD--EFWKMNNLRHLNFGSIT-LPAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLR  264 (430)
Q Consensus       192 ~~L~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~-~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~  264 (430)
                      ++|++++|.++.+|.  .+.++++|++|++++|. +.. ++    +.+++|+.|.+.++......+.. ++.+++|++|+
T Consensus       127 ~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~  204 (353)
T 2z80_A          127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK-IQRKDFAGLTFLEELEIDASDLQSYEPKS-LKSIQNVSHLI  204 (353)
T ss_dssp             SEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE-ECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEE
T ss_pred             CEEECCCCCCcccCchhhhccCCCCcEEECCCCccccc-cCHHHccCCCCCCEEECCCCCcCccCHHH-HhccccCCeec
Confidence            999999999999987  58999999999999995 555 64    56677777777776655555667 99999999999


Q ss_pred             EEccccccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEE----EcccccCCcceEEEEccccCCcccccccCCCeEEE
Q 047903          265 IWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVL----VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTC  340 (430)
Q Consensus       265 l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l----~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~  340 (430)
                      ++++.  ........+..+++|+.|+++++    .++.+..    ..... +.++.++++++.+....+.      .++.
T Consensus       205 l~~n~--l~~~~~~~~~~~~~L~~L~L~~n----~l~~~~~~~l~~~~~~-~~l~~l~L~~~~l~~~~l~------~l~~  271 (353)
T 2z80_A          205 LHMKQ--HILLLEIFVDVTSSVECLELRDT----DLDTFHFSELSTGETN-SLIKKFTFRNVKITDESLF------QVMK  271 (353)
T ss_dssp             EECSC--STTHHHHHHHHTTTEEEEEEESC----BCTTCCCC------CC-CCCCEEEEESCBCCHHHHH------HHHH
T ss_pred             CCCCc--cccchhhhhhhcccccEEECCCC----cccccccccccccccc-chhhccccccccccCcchh------hhHH
Confidence            99996  33333344556899999999962    1221110    11233 6788888888876442110      0111


Q ss_pred             cCCCCCcccEEEEeeCCCCCceEEcC-CccccccEeEEeecC
Q 047903          341 GSDGFPNLKVLHLKSMLWLEEWTMGI-GAMPKLECLIINPCA  381 (430)
Q Consensus       341 ~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~c~  381 (430)
                      ....+++|+.|++++ +.+..++... +.+++|++|++++|+
T Consensus       272 ~l~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          272 LLNQISGLLELEFSR-NQLKSVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             HHHTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             HHhcccCCCEEECCC-CCCCccCHHHHhcCCCCCEEEeeCCC
Confidence            235688999999998 5677777664 678999999999986

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.80  E-value=9.6e-22  Score=184.49  Aligned_cols=234  Identities=17%  Similarity=0.116  Sum_probs=144.5

Q ss_pred             CCCeeEEEEeecCCCcccc-ccc--cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccE
Q 047903          117 RKNVKRINVFEKQSDFAHL-DDY--DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYT  193 (430)
Q Consensus       117 ~~~~r~L~l~~~~~~~~~~-~~~--~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~  193 (430)
                      .+++++|.+. ++.+..++ +.+  +++|+  +|++++|.++..++ ++.+++|++|++++|.++.+|     ..++|++
T Consensus        33 ~~~L~~L~L~-~n~l~~~~~~~~~~l~~L~--~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~  103 (317)
T 3o53_A           33 AWNVKELDLS-GNPLSQISAADLAPFTKLE--LLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL-----VGPSIET  103 (317)
T ss_dssp             GGGCSEEECT-TSCCCCCCHHHHTTCTTCC--EEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE-----ECTTCCE
T ss_pred             CCCCCEEECc-CCccCcCCHHHhhCCCcCC--EEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc-----CCCCcCE
Confidence            4579999999 77766555 344  88999  99999999987665 899999999999999998875     4589999


Q ss_pred             EecCCCCccccchhhccCcccceeecCCcccCCCcC----ccCCCCcccceeecCCCCcchhhhc-CCCCCCceEEEEcc
Q 047903          194 LDMPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPR----KYCRSLENLNFISALHPCCCTEDIL-GRLPNLRNLRIWGD  268 (430)
Q Consensus       194 L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~  268 (430)
                      |++++|.+..++..  .+++|++|++++|.+.. ++    +.+++|+.|.+.++......+.. + ..+++|++|++++|
T Consensus       104 L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~~l~~L~~L~L~~N  179 (317)
T 3o53_A          104 LHAANNNISRVSCS--RGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAE-LAASSDTLEHLNLQYN  179 (317)
T ss_dssp             EECCSSCCSEEEEC--CCSSCEEEECCSSCCCS-GGGBCTGGGSSEEEEECTTSCCCEEEGGG-GGGGTTTCCEEECTTS
T ss_pred             EECCCCccCCcCcc--ccCCCCEEECCCCCCCC-ccchhhhccCCCCEEECCCCCCCcccHHH-HhhccCcCCEEECCCC
Confidence            99999999988753  47899999999999988 54    33455555555444433333333 3 35666777777666


Q ss_pred             ccccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEEEcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcc
Q 047903          269 LSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNL  348 (430)
Q Consensus       269 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L  348 (430)
                      .  ....  .....+++|+.|++++    ..++.+.-.+..+ ++|+.|++++|.+...|           .....+++|
T Consensus       180 ~--l~~~--~~~~~l~~L~~L~Ls~----N~l~~l~~~~~~l-~~L~~L~L~~N~l~~l~-----------~~~~~l~~L  239 (317)
T 3o53_A          180 F--IYDV--KGQVVFAKLKTLDLSS----NKLAFMGPEFQSA-AGVTWISLRNNKLVLIE-----------KALRFSQNL  239 (317)
T ss_dssp             C--CCEE--ECCCCCTTCCEEECCS----SCCCEECGGGGGG-TTCSEEECTTSCCCEEC-----------TTCCCCTTC
T ss_pred             c--Cccc--ccccccccCCEEECCC----CcCCcchhhhccc-CcccEEECcCCcccchh-----------hHhhcCCCC
Confidence            4  1111  1122345555555552    3333332233444 55555555555543211           112344555


Q ss_pred             cEEEEeeCCCCC--ceEEcCCccccccEeEEeecCCCC
Q 047903          349 KVLHLKSMLWLE--EWTMGIGAMPKLECLIINPCAYLK  384 (430)
Q Consensus       349 ~~L~l~~~~~l~--~~~~~~~~~~~L~~L~l~~c~~l~  384 (430)
                      +.|++++. .+.  .++...+.+++|+.|++.+|+.++
T Consensus       240 ~~L~l~~N-~~~~~~~~~~~~~~~~L~~l~l~~~~~l~  276 (317)
T 3o53_A          240 EHFDLRGN-GFHCGTLRDFFSKNQRVQTVAKQTVKKLT  276 (317)
T ss_dssp             CEEECTTC-CCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             CEEEccCC-CccCcCHHHHHhccccceEEECCCchhcc
Confidence            55555542 222  122222345555555555444443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.80  E-value=1.3e-19  Score=185.71  Aligned_cols=138  Identities=20%  Similarity=0.149  Sum_probs=115.5

Q ss_pred             cCCCccccccccCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccch
Q 047903          128 KQSDFAHLDDYDSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTAD  206 (430)
Q Consensus       128 ~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~  206 (430)
                      +.....+|..+.+.++  +|||++|.++.+| .+|+++++|++|+|++|+|+.+|+..|++|++|++|+|++|+++.+|.
T Consensus        40 ~~~l~~vP~~lp~~~~--~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~  117 (635)
T 4g8a_A           40 ELNFYKIPDNLPFSTK--NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL  117 (635)
T ss_dssp             TSCCSSCCSSSCTTCC--EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred             CCCcCccCCCCCcCCC--EEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence            3445668888778899  9999999999887 589999999999999999999988766999999999999999999986


Q ss_pred             h-hccCcccceeecCCcccCCCcC----ccCCCCcccceeecCCCC-cchhhhcCCCCCCceEEEEccc
Q 047903          207 E-FWKMNNLRHLNFGSITLPAHPR----KYCRSLENLNFISALHPC-CCTEDILGRLPNLRNLRIWGDL  269 (430)
Q Consensus       207 ~-i~~L~~L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~  269 (430)
                      + |.++++|++|++++|.+.. +|    +.+++|+.|.+.++.... ..+.. ++.+++|++|+++++.
T Consensus       118 ~~f~~L~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~  184 (635)
T 4g8a_A          118 GAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNK  184 (635)
T ss_dssp             GGGTTCTTCCEEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSC
T ss_pred             HHhcCCCCCCEEECCCCcCCC-CChhhhhcCcccCeeccccCccccCCCchh-hccchhhhhhcccCcc
Confidence            5 8999999999999999998 77    556666666666555332 33455 7888999999988765

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.80  E-value=6.4e-20  Score=169.33  Aligned_cols=213  Identities=15%  Similarity=0.092  Sum_probs=143.4

Q ss_pred             EEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCcccc-chhhccCcccceeecCCcc-
Q 047903          146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHT-ADEFWKMNNLRHLNFGSIT-  223 (430)
Q Consensus       146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~-  223 (430)
                      +++.+++.++.+|..+  .++|++|++++|.++.+|...|+++++|++|++++|.++.+ |..+.++++|++|++++|. 
T Consensus        15 ~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~   92 (285)
T 1ozn_A           15 TTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (285)
T ss_dssp             EEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence            7888999999998765  46899999999999999866559999999999999999987 6679999999999999997 


Q ss_pred             cCCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCCCCC
Q 047903          224 LPAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPT  299 (430)
Q Consensus       224 ~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  299 (430)
                      +.. ++    ..+++|+.|.+.++......+.. +..+++|++|+++++.                              
T Consensus        93 l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~------------------------------  140 (285)
T 1ozn_A           93 LRS-VDPATFHGLGRLHTLHLDRCGLQELGPGL-FRGLAALQYLYLQDNA------------------------------  140 (285)
T ss_dssp             CCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTT-TTTCTTCCEEECCSSC------------------------------
T ss_pred             ccc-cCHHHhcCCcCCCEEECCCCcCCEECHhH-hhCCcCCCEEECCCCc------------------------------
Confidence            665 43    33344444443333322222333 4555555555555543                              


Q ss_pred             ceEEEE-EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCce-EEcCCccccccEeEE
Q 047903          300 LSKIVL-VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEW-TMGIGAMPKLECLII  377 (430)
Q Consensus       300 L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l  377 (430)
                      ++.+.. .+..+ ++|++|++++|.+...+          ......+++|+.|++++ +.+..+ +...+.+++|+.|++
T Consensus       141 l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~----------~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l  208 (285)
T 1ozn_A          141 LQALPDDTFRDL-GNLTHLFLHGNRISSVP----------ERAFRGLHSLDRLLLHQ-NRVAHVHPHAFRDLGRLMTLYL  208 (285)
T ss_dssp             CCCCCTTTTTTC-TTCCEEECCSSCCCEEC----------TTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccCHhHhccC-CCccEEECCCCcccccC----------HHHhcCccccCEEECCC-CcccccCHhHccCcccccEeeC
Confidence            111110 23445 67777777777654321          00134567777888776 334444 333456788888888


Q ss_pred             eecCCCCcCCC-CCCCCCCCCEEEEecCh
Q 047903          378 NPCAYLKKMPE-QPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       378 ~~c~~l~~lp~-~l~~l~~L~~L~l~~~~  405 (430)
                      ++|. +..+|. .+..+++|++|++++|+
T Consensus       209 ~~n~-l~~~~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          209 FANN-LSALPTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             CSSC-CSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             CCCc-CCcCCHHHcccCcccCEEeccCCC
Confidence            8864 666653 47788899999998765

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.79  E-value=9e-21  Score=188.16  Aligned_cols=142  Identities=18%  Similarity=0.143  Sum_probs=104.0

Q ss_pred             cCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCccccee
Q 047903          139 DSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHL  217 (430)
Q Consensus       139 ~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L  217 (430)
                      +++|+  .|++++|.++.++ ..|+.+++|++|++++|.++..++ + +.+++|++|++++|.++.+|.    .++|++|
T Consensus        33 ~~~L~--~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l-~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L  104 (487)
T 3oja_A           33 AWNVK--ELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-L-ESLSTLRTLDLNNNYVQELLV----GPSIETL  104 (487)
T ss_dssp             GGGCC--EEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-C-TTCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred             CCCcc--EEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-c-ccCCCCCEEEecCCcCCCCCC----CCCcCEE
Confidence            44788  9999999988665 688999999999999999987655 5 999999999999998888774    3889999


Q ss_pred             ecCCcccCCCcC-ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhc-CCCCCCEEEEe
Q 047903          218 NFGSITLPAHPR-KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLC-TLTCLESLKLV  292 (430)
Q Consensus       218 ~l~~~~~~~~lp-~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~-~l~~L~~L~l~  292 (430)
                      ++++|.+.+ +| ..+++|+.|.+.++......+.. ++.+++|+.|++++|.  .....+..+. .+++|+.|+++
T Consensus       105 ~L~~N~l~~-~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~--l~~~~~~~l~~~l~~L~~L~Ls  177 (487)
T 3oja_A          105 HAANNNISR-VSCSRGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNE--IDTVNFAELAASSDTLEHLNLQ  177 (487)
T ss_dssp             ECCSSCCCC-EEECCCSSCEEEECCSSCCCSGGGBC-GGGGSSEEEEECTTSC--CCEEEGGGGGGGTTTCCEEECT
T ss_pred             ECcCCcCCC-CCccccCCCCEEECCCCCCCCCCchh-hcCCCCCCEEECCCCC--CCCcChHHHhhhCCcccEEecC
Confidence            999999988 66 66777777777666554444445 6667777777777765  2222233332 34555555554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.79  E-value=8e-19  Score=177.65  Aligned_cols=143  Identities=17%  Similarity=0.082  Sum_probs=115.8

Q ss_pred             eeEEEEeecCCCccccccccCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCccEEecCC
Q 047903          120 VKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPF  198 (430)
Q Consensus       120 ~r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~  198 (430)
                      .+.+.+. ++....+|..+.++++  +|++++|.++.++ ..|+++++|++|++++|.++.+++..|+++++|++|++++
T Consensus        33 ~~~l~ls-~~~L~~ip~~~~~~L~--~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  109 (562)
T 3a79_B           33 ESMVDYS-NRNLTHVPKDLPPRTK--ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH  109 (562)
T ss_dssp             CCEEECT-TSCCCSCCTTSCTTCC--EEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CcEEEcC-CCCCccCCCCCCCCcC--EEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence            3788888 7777778887789999  9999999999877 6899999999999999999988555449999999999999


Q ss_pred             CCccccchhhccCcccceeecCCcccCC-CcC---ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903          199 SYIDHTADEFWKMNNLRHLNFGSITLPA-HPR---KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL  269 (430)
Q Consensus       199 ~~l~~lp~~i~~L~~L~~L~l~~~~~~~-~lp---~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  269 (430)
                      |.++.+|..  .+++|++|++++|.+.. .+|   +.+++|+.|.+.++......... +..+ +|+.|++.++.
T Consensus       110 N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~L-~L~~L~L~~n~  180 (562)
T 3a79_B          110 NRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLP-VAHL-HLSCILLDLVS  180 (562)
T ss_dssp             SCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGG-GTTS-CEEEEEEEESS
T ss_pred             CcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhh-hhhc-eeeEEEeeccc
Confidence            999999986  89999999999999987 234   66777777777765543333333 3333 34888888764

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.78  E-value=1.3e-20  Score=176.25  Aligned_cols=235  Identities=17%  Similarity=0.145  Sum_probs=148.5

Q ss_pred             EEEecCCcccccccccccccCCceeecCCCCCc--ccChHhhh-------cCCCccEEecCCCCcc-ccchhh--ccCcc
Q 047903          146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLK--SLPSPLLS-------NLLNLYTLDMPFSYID-HTADEF--WKMNN  213 (430)
Q Consensus       146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~--~lp~~i~~-------~L~~L~~L~L~~~~l~-~lp~~i--~~L~~  213 (430)
                      .+++++|.+ .+|..+...  |++|++++|.++  .+|..+ .       ++++|++|++++|.++ .+|..+  +.+++
T Consensus        47 ~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~  122 (312)
T 1wwl_A           47 YLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRI-LFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPD  122 (312)
T ss_dssp             THHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHH-HHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCC
T ss_pred             eEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHH-HHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCC
Confidence            555566666 555544433  666666666654  345444 3       5666666666666665 455544  56666


Q ss_pred             cceeecCCcccCCCcC---ccC-----CCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHh--cCC
Q 047903          214 LRHLNFGSITLPAHPR---KYC-----RSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSL--CTL  283 (430)
Q Consensus       214 L~~L~l~~~~~~~~lp---~~l-----~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l--~~l  283 (430)
                      |++|++++|.+.+ +|   +.+     ++|+.|.+.++......+.. ++.+++|++|++++|........+..+  ..+
T Consensus       123 L~~L~Ls~N~l~~-~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l  200 (312)
T 1wwl_A          123 LNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ-VRVFPALSTLDLSDNPELGERGLISALCPLKF  200 (312)
T ss_dssp             CSEEEEESCBCSS-SSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTT-CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred             ccEEEccCCCCcc-hhHHHHHHHHhhcCCCcEEEeeCCCCccchHHH-hccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence            6666666666666 34   222     56666666555543344455 778888888888887511112234444  777


Q ss_pred             CCCCEEEEecCCCCCCceEEEE----EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCC
Q 047903          284 TCLESLKLVSESKMPTLSKIVL----VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWL  359 (430)
Q Consensus       284 ~~L~~L~l~~~~~~~~L~~L~l----~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  359 (430)
                      ++|+.|++++    ..++.+.-    .+..+ ++|++|++++|.+...+.         ......+++|+.|++++ +.+
T Consensus       201 ~~L~~L~L~~----N~l~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~---------~~~~~~l~~L~~L~Ls~-N~l  265 (312)
T 1wwl_A          201 PTLQVLALRN----AGMETPSGVCSALAAAR-VQLQGLDLSHNSLRDAAG---------APSCDWPSQLNSLNLSF-TGL  265 (312)
T ss_dssp             TTCCEEECTT----SCCCCHHHHHHHHHHTT-CCCSEEECTTSCCCSSCC---------CSCCCCCTTCCEEECTT-SCC
T ss_pred             CCCCEEECCC----CcCcchHHHHHHHHhcC-CCCCEEECCCCcCCcccc---------hhhhhhcCCCCEEECCC-Ccc
Confidence            8888888875    23332110    23456 788999999988755320         01123468999999988 456


Q ss_pred             CceEEcCCccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903          360 EEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       360 ~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  405 (430)
                      +.++....  ++|++|++++| .++.+|. +..+++|++|++++++
T Consensus       266 ~~ip~~~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          266 KQVPKGLP--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNP  307 (312)
T ss_dssp             SSCCSSCC--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCT
T ss_pred             Chhhhhcc--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCC
Confidence            66655443  89999999986 5787877 8899999999999987

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.78  E-value=5.7e-19  Score=173.27  Aligned_cols=217  Identities=18%  Similarity=0.121  Sum_probs=163.9

Q ss_pred             EEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccc-hhhccCcccceeecCCccc
Q 047903          146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTA-DEFWKMNNLRHLNFGSITL  224 (430)
Q Consensus       146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~  224 (430)
                      .++.++..++.+|..+.  +++++|++++|+++.++...|.++++|++|+|++|.+..++ ..+.++++|++|++++|.+
T Consensus        47 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l  124 (440)
T 3zyj_A           47 KVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL  124 (440)
T ss_dssp             EEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred             EEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence            78888888999998775  68999999999999887555599999999999999999886 4589999999999999998


Q ss_pred             CCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEE
Q 047903          225 PAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIV  304 (430)
Q Consensus       225 ~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~  304 (430)
                      .. +|                    ... +..+++|++|++++|.  .....+..+..+++|+.|+++.   ...+..+.
T Consensus       125 ~~-~~--------------------~~~-~~~l~~L~~L~L~~N~--i~~~~~~~~~~l~~L~~L~l~~---~~~l~~i~  177 (440)
T 3zyj_A          125 TT-IP--------------------NGA-FVYLSKLKELWLRNNP--IESIPSYAFNRIPSLRRLDLGE---LKRLSYIS  177 (440)
T ss_dssp             SS-CC--------------------TTT-SCSCSSCCEEECCSCC--CCEECTTTTTTCTTCCEEECCC---CTTCCEEC
T ss_pred             Ce-eC--------------------HhH-hhccccCceeeCCCCc--ccccCHHHhhhCcccCEeCCCC---CCCcceeC
Confidence            87 44                    112 4555556666666554  2222223455666666766665   44455443


Q ss_pred             E-EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceE-EcCCccccccEeEEeecCC
Q 047903          305 L-VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWT-MGIGAMPKLECLIINPCAY  382 (430)
Q Consensus       305 l-~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~c~~  382 (430)
                      - .+..+ ++|+.|++++|.+...|            ....+++|+.|++++ +.+..+. .....+++|+.|++.+|..
T Consensus       178 ~~~~~~l-~~L~~L~L~~n~l~~~~------------~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~n~l  243 (440)
T 3zyj_A          178 EGAFEGL-SNLRYLNLAMCNLREIP------------NLTPLIKLDELDLSG-NHLSAIRPGSFQGLMHLQKLWMIQSQI  243 (440)
T ss_dssp             TTTTTTC-SSCCEEECTTSCCSSCC------------CCTTCSSCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             cchhhcc-cccCeecCCCCcCcccc------------ccCCCcccCEEECCC-CccCccChhhhccCccCCEEECCCCce
Confidence            2 45677 99999999999886543            246789999999998 4566653 3346789999999999764


Q ss_pred             CCcCCCCCCCCCCCCEEEEecCh
Q 047903          383 LKKMPEQPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       383 l~~lp~~l~~l~~L~~L~l~~~~  405 (430)
                      -...|..+.++++|++|++++|.
T Consensus       244 ~~~~~~~~~~l~~L~~L~L~~N~  266 (440)
T 3zyj_A          244 QVIERNAFDNLQSLVEINLAHNN  266 (440)
T ss_dssp             CEECTTSSTTCTTCCEEECTTSC
T ss_pred             eEEChhhhcCCCCCCEEECCCCC
Confidence            34346678899999999999986

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.78  E-value=4e-19  Score=174.94  Aligned_cols=217  Identities=17%  Similarity=0.119  Sum_probs=165.1

Q ss_pred             EEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccc-hhhccCcccceeecCCccc
Q 047903          146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTA-DEFWKMNNLRHLNFGSITL  224 (430)
Q Consensus       146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~  224 (430)
                      .++.++..++.+|..+.  ++|++|++++|.++.+++..|+++++|++|+|++|.+..++ ..+.++++|++|++++|.+
T Consensus        58 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l  135 (452)
T 3zyi_A           58 KVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL  135 (452)
T ss_dssp             EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence            78888888999998765  68999999999999885554599999999999999999886 5589999999999999998


Q ss_pred             CCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEE
Q 047903          225 PAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIV  304 (430)
Q Consensus       225 ~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~  304 (430)
                      .. +|                    ... ++.+++|++|++++|.  .....+..+..+++|+.|+++.   +..++.+.
T Consensus       136 ~~-~~--------------------~~~-~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~l~~---~~~l~~i~  188 (452)
T 3zyi_A          136 TV-IP--------------------SGA-FEYLSKLRELWLRNNP--IESIPSYAFNRVPSLMRLDLGE---LKKLEYIS  188 (452)
T ss_dssp             SB-CC--------------------TTT-SSSCTTCCEEECCSCC--CCEECTTTTTTCTTCCEEECCC---CTTCCEEC
T ss_pred             Cc-cC--------------------hhh-hcccCCCCEEECCCCC--cceeCHhHHhcCCcccEEeCCC---CCCccccC
Confidence            87 44                    112 4555666666666654  2222223456666777777765   45555554


Q ss_pred             E-EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceE-EcCCccccccEeEEeecCC
Q 047903          305 L-VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWT-MGIGAMPKLECLIINPCAY  382 (430)
Q Consensus       305 l-~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~c~~  382 (430)
                      . .+..+ ++|+.|++++|.+...|            ....+++|+.|++++ +.+..+. .....+++|+.|++++|..
T Consensus       189 ~~~~~~l-~~L~~L~L~~n~l~~~~------------~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~n~l  254 (452)
T 3zyi_A          189 EGAFEGL-FNLKYLNLGMCNIKDMP------------NLTPLVGLEELEMSG-NHFPEIRPGSFHGLSSLKKLWVMNSQV  254 (452)
T ss_dssp             TTTTTTC-TTCCEEECTTSCCSSCC------------CCTTCTTCCEEECTT-SCCSEECGGGGTTCTTCCEEECTTSCC
T ss_pred             hhhccCC-CCCCEEECCCCcccccc------------cccccccccEEECcC-CcCcccCcccccCccCCCEEEeCCCcC
Confidence            3 35677 99999999999886543            246789999999998 5566653 3456789999999999864


Q ss_pred             CCcCCCCCCCCCCCCEEEEecCh
Q 047903          383 LKKMPEQPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       383 l~~lp~~l~~l~~L~~L~l~~~~  405 (430)
                      ....|..+..+++|++|++++|.
T Consensus       255 ~~~~~~~~~~l~~L~~L~L~~N~  277 (452)
T 3zyi_A          255 SLIERNAFDGLASLVELNLAHNN  277 (452)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSC
T ss_pred             ceECHHHhcCCCCCCEEECCCCc
Confidence            44456778999999999999986

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.78  E-value=1.3e-19  Score=169.04  Aligned_cols=222  Identities=18%  Similarity=0.187  Sum_probs=143.7

Q ss_pred             CCCCeeEEEEeecCCCccccccc---cCcceEEEEEecCCccccc---ccccccccCCceeecCCCCCcccChHhhhcCC
Q 047903          116 SRKNVKRINVFEKQSDFAHLDDY---DSHMHSLVLDLGSLVLIHY---LSGIENLFLLRYLKLNIPSLKSLPSPLLSNLL  189 (430)
Q Consensus       116 ~~~~~r~L~l~~~~~~~~~~~~~---~~~L~~L~L~l~~~~l~~l---p~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~  189 (430)
                      .+.++++|.+. ++.+..++...   +++|+  +|++++|.++.+   |..+..+++|++|++++|.++.+|..+ .+++
T Consensus        26 ~~~~l~~L~L~-~n~l~~i~~~~~~~l~~L~--~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~-~~l~  101 (306)
T 2z66_A           26 IPSSATRLELE-SNKLQSLPHGVFDKLTQLT--KLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF-LGLE  101 (306)
T ss_dssp             CCTTCCEEECC-SSCCCCCCTTTTTTCTTCS--EEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEE-ETCT
T ss_pred             CCCCCCEEECC-CCccCccCHhHhhccccCC--EEECCCCccCcccCcccccccccccCEEECCCCccccChhhc-CCCC
Confidence            35689999999 77777777654   78888  999999998754   567778999999999999999999888 9999


Q ss_pred             CccEEecCCCCccccch--hhccCcccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEc
Q 047903          190 NLYTLDMPFSYIDHTAD--EFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWG  267 (430)
Q Consensus       190 ~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  267 (430)
                      +|++|++++|.++.++.  .+.++++|++|++++|.+....|..                      ++.+++|++|++++
T Consensus       102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----------------------~~~l~~L~~L~l~~  159 (306)
T 2z66_A          102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI----------------------FNGLSSLEVLKMAG  159 (306)
T ss_dssp             TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTT----------------------TTTCTTCCEEECTT
T ss_pred             CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhh----------------------cccCcCCCEEECCC
Confidence            99999999999998875  6899999999999999887622222                      33344444444444


Q ss_pred             cccccHH-HHHHHhcCCCCCCEEEEecCCCCCCceEEEE-EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCC
Q 047903          268 DLSYYQS-LLSQSLCTLTCLESLKLVSESKMPTLSKIVL-VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGF  345 (430)
Q Consensus       268 ~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~  345 (430)
                      +.  ... ..+..+..+++|+.|++++    ..++.+.. ++..+ ++|++|++++|.+...+          ......+
T Consensus       160 n~--l~~~~~~~~~~~l~~L~~L~Ls~----n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~----------~~~~~~l  222 (306)
T 2z66_A          160 NS--FQENFLPDIFTELRNLTFLDLSQ----CQLEQLSPTAFNSL-SSLQVLNMSHNNFFSLD----------TFPYKCL  222 (306)
T ss_dssp             CE--EGGGEECSCCTTCTTCCEEECTT----SCCCEECTTTTTTC-TTCCEEECTTSCCSBCC----------SGGGTTC
T ss_pred             Cc--cccccchhHHhhCcCCCEEECCC----CCcCCcCHHHhcCC-CCCCEEECCCCccCccC----------hhhccCc
Confidence            42  111 1233344444444444442    22232211 33444 56666666666554321          0012345


Q ss_pred             CcccEEEEeeCCCCCce-EEcCCccc-cccEeEEeecC
Q 047903          346 PNLKVLHLKSMLWLEEW-TMGIGAMP-KLECLIINPCA  381 (430)
Q Consensus       346 ~~L~~L~l~~~~~l~~~-~~~~~~~~-~L~~L~l~~c~  381 (430)
                      ++|+.|+++++ .+... +.....++ +|++|++++|+
T Consensus       223 ~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          223 NSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             TTCCEEECTTS-CCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             ccCCEeECCCC-CCcccCHHHHHhhhccCCEEEccCCC
Confidence            66666666653 33332 22233443 66677666654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.78  E-value=1.4e-19  Score=179.58  Aligned_cols=215  Identities=15%  Similarity=0.111  Sum_probs=172.9

Q ss_pred             cccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceeecCCcccCCCcCccCCCCcccceee
Q 047903          163 NLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFIS  242 (430)
Q Consensus       163 ~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~  242 (430)
                      .+++|++|++++|.++.+|+..|+++++|++|+|++|.+..++. ++.+++|++|++++|.+.+ +|. .++|+.|.+.+
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~~-~~~L~~L~L~~  108 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE-LLV-GPSIETLHAAN  108 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEE-EEE-CTTCCEEECCS
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCC-CCC-CCCcCEEECcC
Confidence            34489999999999998865444999999999999999987765 9999999999999999987 762 27788887776


Q ss_pred             cCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEE-Ecc-cccCCcceEEEE
Q 047903          243 ALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVL-VEY-QFPPRLTHLSFS  320 (430)
Q Consensus       243 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~-~lp~~L~~L~L~  320 (430)
                      +......    ...+++|+.|++++|.  .....+..+..+++|+.|++++    ..+..... .+. .+ ++|+.|+|+
T Consensus       109 N~l~~~~----~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~Ls~----N~l~~~~~~~l~~~l-~~L~~L~Ls  177 (487)
T 3oja_A          109 NNISRVS----CSRGQGKKNIYLANNK--ITMLRDLDEGCRSRVQYLDLKL----NEIDTVNFAELAASS-DTLEHLNLQ  177 (487)
T ss_dssp             SCCCCEE----ECCCSSCEEEECCSSC--CCSGGGBCGGGGSSEEEEECTT----SCCCEEEGGGGGGGT-TTCCEEECT
T ss_pred             CcCCCCC----ccccCCCCEEECCCCC--CCCCCchhhcCCCCCCEEECCC----CCCCCcChHHHhhhC-CcccEEecC
Confidence            6543222    3456889999999997  5555556778899999999984    45665533 333 67 999999999


Q ss_pred             ccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEcCCccccccEeEEeecCCCCcCCCCCCCCCCCCEEE
Q 047903          321 NTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFN  400 (430)
Q Consensus       321 ~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~  400 (430)
                      +|.+...            .....+++|+.|++++ +.+..++...+.+++|+.|++++| .+..+|..+..+++|+.|+
T Consensus       178 ~N~l~~~------------~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~  243 (487)
T 3oja_A          178 YNFIYDV------------KGQVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFD  243 (487)
T ss_dssp             TSCCCEE------------ECCCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEE
T ss_pred             CCccccc------------cccccCCCCCEEECCC-CCCCCCCHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEE
Confidence            9987543            2234589999999998 567887777778999999999996 4778999999999999999


Q ss_pred             EecCh
Q 047903          401 CWWPQ  405 (430)
Q Consensus       401 l~~~~  405 (430)
                      +++|+
T Consensus       244 l~~N~  248 (487)
T 3oja_A          244 LRGNG  248 (487)
T ss_dssp             CTTCC
T ss_pred             cCCCC
Confidence            99987

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.77  E-value=3.5e-18  Score=167.94  Aligned_cols=259  Identities=18%  Similarity=0.138  Sum_probs=185.8

Q ss_pred             CCCCeeEEEEeecCCCccccccccCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEe
Q 047903          116 SRKNVKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLD  195 (430)
Q Consensus       116 ~~~~~r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~  195 (430)
                      .+++++.|.+. ++....+++ ..++|+  +|++++|.++.+|...   ++|++|++++|.++.+| ++ +++++|++|+
T Consensus        89 ~~~~L~~L~l~-~n~l~~lp~-~~~~L~--~L~l~~n~l~~l~~~~---~~L~~L~L~~n~l~~lp-~~-~~l~~L~~L~  159 (454)
T 1jl5_A           89 LPPHLESLVAS-CNSLTELPE-LPQSLK--SLLVDNNNLKALSDLP---PLLEYLGVSNNQLEKLP-EL-QNSSFLKIID  159 (454)
T ss_dssp             CCTTCSEEECC-SSCCSSCCC-CCTTCC--EEECCSSCCSCCCSCC---TTCCEEECCSSCCSSCC-CC-TTCTTCCEEE
T ss_pred             CcCCCCEEEcc-CCcCCcccc-ccCCCc--EEECCCCccCcccCCC---CCCCEEECcCCCCCCCc-cc-CCCCCCCEEE
Confidence            35689999998 766665554 368888  9999999988776432   68999999999999998 56 9999999999


Q ss_pred             cCCCCccccchhhccCcccceeecCCcccCCCcC--ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccH
Q 047903          196 MPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPR--KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQ  273 (430)
Q Consensus       196 L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp--~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  273 (430)
                      +++|+++.+|..   ..+|++|++++|.+.+ +|  +.+++|+.|.+.++...  .+..   ..++|++|+++++.  ..
T Consensus       160 l~~N~l~~lp~~---~~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l~--~l~~---~~~~L~~L~l~~n~--l~  228 (454)
T 1jl5_A          160 VDNNSLKKLPDL---PPSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSLK--KLPD---LPLSLESIVAGNNI--LE  228 (454)
T ss_dssp             CCSSCCSCCCCC---CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCS--SCCC---CCTTCCEEECCSSC--CS
T ss_pred             CCCCcCcccCCC---cccccEEECcCCcCCc-CccccCCCCCCEEECCCCcCC--cCCC---CcCcccEEECcCCc--CC
Confidence            999999988864   3589999999999998 88  66777777766555432  1222   23589999999986  22


Q ss_pred             HHHHHHhcCCCCCCEEEEecCC------CCCCceEEEE---Ecc---cccCCcceEEEEccccCCcccccccCCCeEEEc
Q 047903          274 SLLSQSLCTLTCLESLKLVSES------KMPTLSKIVL---VEY---QFPPRLTHLSFSNTELMEDPKSRASSSRKLTCG  341 (430)
Q Consensus       274 ~~~~~~l~~l~~L~~L~l~~~~------~~~~L~~L~l---~~~---~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~  341 (430)
                       .++ .+..+++|+.|+++++.      .+++|+.|++   .+.   ..+++|+.|++++|.+...+... .....+...
T Consensus       229 -~lp-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~-~~L~~L~l~  305 (454)
T 1jl5_A          229 -ELP-ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP-PNLYYLNAS  305 (454)
T ss_dssp             -SCC-CCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCC-TTCCEEECC
T ss_pred             -ccc-ccCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcC-CcCCEEECc
Confidence             444 37889999999998721      1567888877   222   22378899999998876532100 001111100


Q ss_pred             ------CCCC-CcccEEEEeeCCCCCceEEcCCccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903          342 ------SDGF-PNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       342 ------~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  405 (430)
                            ...+ ++|+.|++++ +.+..++.   .+++|+.|++++| .++.+|.   .+++|++|++++|+
T Consensus       306 ~N~l~~i~~~~~~L~~L~Ls~-N~l~~lp~---~~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N~  368 (454)
T 1jl5_A          306 SNEIRSLCDLPPSLEELNVSN-NKLIELPA---LPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNP  368 (454)
T ss_dssp             SSCCSEECCCCTTCCEEECCS-SCCSCCCC---CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC
T ss_pred             CCcCCcccCCcCcCCEEECCC-Cccccccc---cCCcCCEEECCCC-ccccccc---hhhhccEEECCCCC
Confidence                  1123 4788888887 45655443   3689999999987 5778887   47899999999877

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.76  E-value=9e-19  Score=160.32  Aligned_cols=149  Identities=22%  Similarity=0.203  Sum_probs=108.0

Q ss_pred             CCCCeeEEEEeecCCCccccccccCcceEEEEEecCCccccccc-ccccccCCceeecCCCCCcccChHhhhcCCCccEE
Q 047903          116 SRKNVKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLS-GIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTL  194 (430)
Q Consensus       116 ~~~~~r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L  194 (430)
                      .....+.+.+. ++....+|..+.++++  .|++++|.++.++. .|+++++|++|++++|.++.+|..+|.++++|++|
T Consensus        14 c~~~~~~l~~~-~~~l~~ip~~~~~~l~--~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L   90 (270)
T 2o6q_A           14 CNNNKNSVDCS-SKKLTAIPSNIPADTK--KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL   90 (270)
T ss_dssp             EETTTTEEECT-TSCCSSCCSCCCTTCS--EEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEE
T ss_pred             eCCCCCEEEcc-CCCCCccCCCCCCCCC--EEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEE
Confidence            33456677777 6667777777777888  89999999887774 78899999999999999999988777889999999


Q ss_pred             ecCCCCccccchh-hccCcccceeecCCcccCCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903          195 DMPFSYIDHTADE-FWKMNNLRHLNFGSITLPAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL  269 (430)
Q Consensus       195 ~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  269 (430)
                      ++++|.+..+|.. +.++++|++|++++|.+.. +|    +.+++|+.|.+.++......... ++.+++|++|+++++.
T Consensus        91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~  168 (270)
T 2o6q_A           91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQSLPKGV-FDKLTSLKELRLYNNQ  168 (270)
T ss_dssp             ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSC
T ss_pred             ECCCCcCCcCCHhHcccccCCCEEECCCCccCe-eCHHHhCcCcCCCEEECCCCcCCccCHhH-ccCCcccceeEecCCc
Confidence            9999998888765 6889999999999998887 54    23444444444333322222222 4555555555555553

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.75  E-value=6.9e-19  Score=161.60  Aligned_cols=209  Identities=21%  Similarity=0.157  Sum_probs=129.2

Q ss_pred             CCCccccccccCcceEEEEEecCCccccccc-ccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccc-h
Q 047903          129 QSDFAHLDDYDSHMHSLVLDLGSLVLIHYLS-GIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTA-D  206 (430)
Q Consensus       129 ~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp-~  206 (430)
                      .....+|..+.++++  +|++++|.++.++. .++++++|++|++++|.++.++...|+++++|++|++++|.++.++ .
T Consensus        17 ~~l~~ip~~l~~~l~--~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~   94 (276)
T 2z62_A           17 LNFYKIPDNLPFSTK--NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG   94 (276)
T ss_dssp             SCCSSCCSSSCTTCC--EEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred             CCccccCCCCCCCcc--EEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh
Confidence            334446666666778  88888888876664 7778888888888888888776644488888888888888877765 4


Q ss_pred             hhccCcccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHH-HHHHHhcCCCC
Q 047903          207 EFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQS-LLSQSLCTLTC  285 (430)
Q Consensus       207 ~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~l~~  285 (430)
                      .+.++++|++|++++|.+.. +                    .... ++.+++|++|+++++.  ... .++..+..+  
T Consensus        95 ~~~~l~~L~~L~l~~n~l~~-~--------------------~~~~-~~~l~~L~~L~l~~n~--l~~~~l~~~~~~l--  148 (276)
T 2z62_A           95 AFSGLSSLQKLVAVETNLAS-L--------------------ENFP-IGHLKTLKELNVAHNL--IQSFKLPEYFSNL--  148 (276)
T ss_dssp             TTTTCTTCCEEECTTSCCCC-S--------------------TTCC-CTTCTTCCEEECCSSC--CCCCCCCGGGGGC--
T ss_pred             hhcCCccccEEECCCCCccc-c--------------------Cchh-cccCCCCCEEECcCCc--cceecCchhhccC--
Confidence            47788888888888877765 2                    1223 6778888899888875  211 123334444  


Q ss_pred             CCEEEEecCCCCCCceEEEEEcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCccc----EEEEeeCCCCCc
Q 047903          286 LESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLK----VLHLKSMLWLEE  361 (430)
Q Consensus       286 L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~l~~  361 (430)
                                                ++|++|++++|.+...+.          .....+++|+    .|++++ +.+..
T Consensus       149 --------------------------~~L~~L~Ls~N~l~~~~~----------~~~~~l~~L~~l~l~L~ls~-n~l~~  191 (276)
T 2z62_A          149 --------------------------TNLEHLDLSSNKIQSIYC----------TDLRVLHQMPLLNLSLDLSL-NPMNF  191 (276)
T ss_dssp             --------------------------TTCCEEECCSSCCCEECG----------GGGHHHHTCTTCCEEEECCS-SCCCE
T ss_pred             --------------------------CCCCEEECCCCCCCcCCH----------HHhhhhhhccccceeeecCC-Ccccc
Confidence                                      444555555554432110          0011122222    455554 33444


Q ss_pred             eEEcCCccccccEeEEeecCCCCcCCCC-CCCCCCCCEEEEec
Q 047903          362 WTMGIGAMPKLECLIINPCAYLKKMPEQ-PWCIKSLNKFNCWW  403 (430)
Q Consensus       362 ~~~~~~~~~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~  403 (430)
                      ++.......+|+.|++++|. ++.+|.. +..+++|++|++++
T Consensus       192 ~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~  233 (276)
T 2z62_A          192 IQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHT  233 (276)
T ss_dssp             ECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCS
T ss_pred             cCccccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccC
Confidence            44333334467777777754 6666543 46677777777774

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.75  E-value=1.1e-17  Score=169.75  Aligned_cols=232  Identities=18%  Similarity=0.087  Sum_probs=185.7

Q ss_pred             CeeEEEEeecCCCccccccccCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCC
Q 047903          119 NVKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPF  198 (430)
Q Consensus       119 ~~r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~  198 (430)
                      +++.|.+. ++....++..+.++|+  .|++++|.++.+|.   .+++|++|++++|+++.+|.    .+++|++|++++
T Consensus        41 ~l~~L~ls-~n~L~~lp~~l~~~L~--~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~  110 (622)
T 3g06_A           41 GNAVLNVG-ESGLTTLPDCLPAHIT--TLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFS  110 (622)
T ss_dssp             CCCEEECC-SSCCSCCCSCCCTTCS--EEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECS
T ss_pred             CCcEEEec-CCCcCccChhhCCCCc--EEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcC
Confidence            47888998 7777778887788999  99999999998887   57899999999999999985    679999999999


Q ss_pred             CCccccchhhccCcccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHH
Q 047903          199 SYIDHTADEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQ  278 (430)
Q Consensus       199 ~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  278 (430)
                      |.++.+|.   .+++|++|++++|.+.. +|..+++|+.|.+.++....  +.   ..+++|+.|++.+|.   ...++ 
T Consensus       111 N~l~~l~~---~l~~L~~L~L~~N~l~~-lp~~l~~L~~L~Ls~N~l~~--l~---~~~~~L~~L~L~~N~---l~~l~-  177 (622)
T 3g06_A          111 NPLTHLPA---LPSGLCKLWIFGNQLTS-LPVLPPGLQELSVSDNQLAS--LP---ALPSELCKLWAYNNQ---LTSLP-  177 (622)
T ss_dssp             CCCCCCCC---CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSC---CSCCC-
T ss_pred             CcCCCCCC---CCCCcCEEECCCCCCCc-CCCCCCCCCEEECcCCcCCC--cC---CccCCCCEEECCCCC---CCCCc-
Confidence            99999987   67899999999999998 99667888888877665321  11   234688999999886   22222 


Q ss_pred             HhcCCCCCCEEEEecCCCCCCceEEEEEcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCC
Q 047903          279 SLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLW  358 (430)
Q Consensus       279 ~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  358 (430)
                        ..+++|+.|++++    ..++.++   ..+ ++|+.|++++|.+...|              ..+++|+.|++++ +.
T Consensus       178 --~~~~~L~~L~Ls~----N~l~~l~---~~~-~~L~~L~L~~N~l~~l~--------------~~~~~L~~L~Ls~-N~  232 (622)
T 3g06_A          178 --MLPSGLQELSVSD----NQLASLP---TLP-SELYKLWAYNNRLTSLP--------------ALPSGLKELIVSG-NR  232 (622)
T ss_dssp             --CCCTTCCEEECCS----SCCSCCC---CCC-TTCCEEECCSSCCSSCC--------------CCCTTCCEEECCS-SC
T ss_pred             --ccCCCCcEEECCC----CCCCCCC---Ccc-chhhEEECcCCcccccC--------------CCCCCCCEEEccC-Cc
Confidence              4567889999885    3444332   123 89999999999886533              2468999999998 56


Q ss_pred             CCceEEcCCccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903          359 LEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       359 l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  405 (430)
                      +..++   ..+++|+.|++++| .++.+|.   .+++|+.|++++|.
T Consensus       233 L~~lp---~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N~  272 (622)
T 3g06_A          233 LTSLP---VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRNQ  272 (622)
T ss_dssp             CSCCC---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC
T ss_pred             cCcCC---CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCCC
Confidence            77765   56799999999997 5888987   57899999999987

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.75  E-value=9.2e-20  Score=170.56  Aligned_cols=236  Identities=18%  Similarity=0.136  Sum_probs=164.0

Q ss_pred             eeEEEEeecCCCccccccccCcceEEEEEecCCccc--ccccccc-------cccCCceeecCCCCCc-ccChHhh-hcC
Q 047903          120 VKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLI--HYLSGIE-------NLFLLRYLKLNIPSLK-SLPSPLL-SNL  188 (430)
Q Consensus       120 ~r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~--~lp~~~~-------~l~~L~~L~L~~~~i~-~lp~~i~-~~L  188 (430)
                      ++.+.+. ++.. .++..+...++  .|++++|.+.  .+|..+.       ++++|++|++++|.++ .+|..+| +.+
T Consensus        45 L~~l~l~-~n~l-~~p~~~~~~L~--~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l  120 (312)
T 1wwl_A           45 LEYLLKR-VDTE-ADLGQFTDIIK--SLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG  120 (312)
T ss_dssp             CTTHHHH-CCTT-CCCHHHHHHHH--HCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred             ceeEeec-cccc-ccHHHHHHHHh--hcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence            3334444 3344 45555544477  7788888875  4555554       6888889999888887 5676654 788


Q ss_pred             CCccEEecCCCCccccchhhccC-----cccceeecCCcccCCCcC----ccCCCCcccceeecCCCCc--chhhhc--C
Q 047903          189 LNLYTLDMPFSYIDHTADEFWKM-----NNLRHLNFGSITLPAHPR----KYCRSLENLNFISALHPCC--CTEDIL--G  255 (430)
Q Consensus       189 ~~L~~L~L~~~~l~~lp~~i~~L-----~~L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~~~~~--~~~~~l--~  255 (430)
                      ++|++|++++|.++.+|..++.+     ++|++|++++|.+.+ +|    +.+++|+.|.+.++.....  .+.. +  +
T Consensus       121 ~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~~~~  198 (312)
T 1wwl_A          121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN-FSCEQVRVFPALSTLDLSDNPELGERGLISA-LCPL  198 (312)
T ss_dssp             CCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCC-CCTTTCCCCSSCCEEECCSCTTCHHHHHHHH-SCTT
T ss_pred             CCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCcc-chHHHhccCCCCCEEECCCCCcCcchHHHHH-HHhc
Confidence            88999999888888778777777     888999998888887 55    4455555555544432211  2334 4  8


Q ss_pred             CCCCCceEEEEccccccHHHHH-HHhcCCCCCCEEEEecCCCCCCceEEE-E-EcccccCCcceEEEEccccCCcccccc
Q 047903          256 RLPNLRNLRIWGDLSYYQSLLS-QSLCTLTCLESLKLVSESKMPTLSKIV-L-VEYQFPPRLTHLSFSNTELMEDPKSRA  332 (430)
Q Consensus       256 ~l~~L~~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~L~~L~-l-~~~~lp~~L~~L~L~~~~l~~~~~~~~  332 (430)
                      .+++|++|++++|.-......+ ..+..+++|+.|++++    ..++... . .+..+ ++|++|++++|.+...|    
T Consensus       199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~----N~l~~~~~~~~~~~l-~~L~~L~Ls~N~l~~ip----  269 (312)
T 1wwl_A          199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH----NSLRDAAGAPSCDWP-SQLNSLNLSFTGLKQVP----  269 (312)
T ss_dssp             SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTT----SCCCSSCCCSCCCCC-TTCCEEECTTSCCSSCC----
T ss_pred             cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCC----CcCCcccchhhhhhc-CCCCEEECCCCccChhh----
Confidence            8999999999999722222333 4556889999999986    2233211 0 23456 89999999999986443    


Q ss_pred             cCCCeEEEcCCCCCcccEEEEeeCCCCCceEEcCCccccccEeEEeecC
Q 047903          333 SSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCA  381 (430)
Q Consensus       333 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~  381 (430)
                               ...+++|++|++++ +.++.++. ...+++|++|++++++
T Consensus       270 ---------~~~~~~L~~L~Ls~-N~l~~~p~-~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          270 ---------KGLPAKLSVLDLSY-NRLDRNPS-PDELPQVGNLSLKGNP  307 (312)
T ss_dssp             ---------SSCCSEEEEEECCS-SCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred             ---------hhccCCceEEECCC-CCCCCChh-HhhCCCCCEEeccCCC
Confidence                     11227999999998 66777754 6789999999999875

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.72  E-value=7.1e-18  Score=154.82  Aligned_cols=130  Identities=18%  Similarity=0.130  Sum_probs=107.5

Q ss_pred             CCCCeeEEEEeecCCCccccc-cc--cCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCc
Q 047903          116 SRKNVKRINVFEKQSDFAHLD-DY--DSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNL  191 (430)
Q Consensus       116 ~~~~~r~L~l~~~~~~~~~~~-~~--~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L  191 (430)
                      .+..+++|.+. ++.+..++. .+  +++|+  +|++++|.++.++ ..++++++|++|++++|.++.++...|+++++|
T Consensus        26 l~~~l~~L~ls-~n~l~~~~~~~~~~l~~L~--~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  102 (276)
T 2z62_A           26 LPFSTKNLDLS-FNPLRHLGSYSFFSFPELQ--VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL  102 (276)
T ss_dssp             SCTTCCEEECT-TCCCCEECTTTTTTCTTCS--EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred             CCCCccEEECC-CCcccccCHhHhccccCCc--EEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccc
Confidence            45679999999 777766655 44  78899  9999999999776 478999999999999999998875545999999


Q ss_pred             cEEecCCCCccccch-hhccCcccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903          192 YTLDMPFSYIDHTAD-EFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL  269 (430)
Q Consensus       192 ~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  269 (430)
                      ++|++++|.+..++. .++++++|++|++++|.+.. +                   ..+.. ++.+++|++|++++|.
T Consensus       103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~-------------------~l~~~-~~~l~~L~~L~Ls~N~  160 (276)
T 2z62_A          103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS-F-------------------KLPEY-FSNLTNLEHLDLSSNK  160 (276)
T ss_dssp             CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC-C-------------------CCCGG-GGGCTTCCEEECCSSC
T ss_pred             cEEECCCCCccccCchhcccCCCCCEEECcCCccce-e-------------------cCchh-hccCCCCCEEECCCCC
Confidence            999999999998876 58999999999999999876 1                   12334 6777888888888775

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.71  E-value=4.8e-18  Score=161.48  Aligned_cols=234  Identities=15%  Similarity=0.041  Sum_probs=148.5

Q ss_pred             eEEEEeecCCCccccccccCcceEEEEEecCCccccccc-ccccccCCceeecCCCCCc-ccChHhhhcCCCccE-EecC
Q 047903          121 KRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLS-GIENLFLLRYLKLNIPSLK-SLPSPLLSNLLNLYT-LDMP  197 (430)
Q Consensus       121 r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~-~~~~l~~L~~L~L~~~~i~-~lp~~i~~~L~~L~~-L~L~  197 (430)
                      +.+... ++....+|..+.++++  .|++++|.++.+|. .|+++++|++|+|++|++. .+|...|.++++|+. +.++
T Consensus        12 ~~v~C~-~~~Lt~iP~~l~~~l~--~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQ-ESKVTEIPSDLPRNAI--ELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEE-STTCCSCCTTCCTTCS--EEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEec-CCCCCccCcCcCCCCC--EEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            345555 6667778888888899  99999999999985 7899999999999999975 577777799999876 5566


Q ss_pred             CCCccccch-hhccCcccceeecCCcccCCCcC--ccC--CCCcccceeecCCCCcchhhhcCCCC-CCceEEEEccccc
Q 047903          198 FSYIDHTAD-EFWKMNNLRHLNFGSITLPAHPR--KYC--RSLENLNFISALHPCCCTEDILGRLP-NLRNLRIWGDLSY  271 (430)
Q Consensus       198 ~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~lp--~~l--~~L~~L~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~  271 (430)
                      +|+++.+|. .+..+++|++|++++|.+.. +|  ...  .++..|.+.+...........+..+. .++.|+++++.  
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~--  165 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG--  165 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSS-CCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC--
T ss_pred             CCcccccCchhhhhcccccccccccccccc-CCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc--
Confidence            679998865 48999999999999999988 66  222  23333433333221122221144443 46677777764  


Q ss_pred             cHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEE-EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccE
Q 047903          272 YQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVL-VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKV  350 (430)
Q Consensus       272 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~  350 (430)
                       ...++.......+|+.|.+.+   ...++.++- .+..+ ++|+.|++++|++...|             ...|.+|+.
T Consensus       166 -i~~i~~~~f~~~~L~~l~l~~---~n~l~~i~~~~f~~l-~~L~~LdLs~N~l~~lp-------------~~~~~~L~~  227 (350)
T 4ay9_X          166 -IQEIHNSAFNGTQLDELNLSD---NNNLEELPNDVFHGA-SGPVILDISRTRIHSLP-------------SYGLENLKK  227 (350)
T ss_dssp             -CCEECTTSSTTEEEEEEECTT---CTTCCCCCTTTTTTE-ECCSEEECTTSCCCCCC-------------SSSCTTCCE
T ss_pred             -ccCCChhhccccchhHHhhcc---CCcccCCCHHHhccC-cccchhhcCCCCcCccC-------------hhhhccchH
Confidence             122222223334556666554   334444332 23455 66666666666654432             234566666


Q ss_pred             EEEeeCCCCCceEEcCCccccccEeEEee
Q 047903          351 LHLKSMLWLEEWTMGIGAMPKLECLIINP  379 (430)
Q Consensus       351 L~l~~~~~l~~~~~~~~~~~~L~~L~l~~  379 (430)
                      |.+.++++++.+|. ...+++|+.+++.+
T Consensus       228 L~~l~~~~l~~lP~-l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          228 LRARSTYNLKKLPT-LEKLVALMEASLTY  255 (350)
T ss_dssp             EECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred             hhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence            66666666665552 34466666666543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.71  E-value=1.8e-17  Score=151.69  Aligned_cols=123  Identities=21%  Similarity=0.133  Sum_probs=93.1

Q ss_pred             cceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchh-hccCcccceeec
Q 047903          141 HMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADE-FWKMNNLRHLNF  219 (430)
Q Consensus       141 ~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l  219 (430)
                      +.+  .++++++.++.+|..+.  .+|++|++++|.++.+|...|+++++|++|++++|.++.+|.. +.++++|++|++
T Consensus        17 ~~~--~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKN--SVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTT--EEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCC--EEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            355  89999999999997665  6899999999999999875559999999999999999999876 588999999999


Q ss_pred             CCcccCCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903          220 GSITLPAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL  269 (430)
Q Consensus       220 ~~~~~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  269 (430)
                      ++|.+.. +|    ..+++|+.|.+.++......+.. ++.+++|+.|+++++.
T Consensus        93 ~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~  144 (270)
T 2o6q_A           93 TDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRV-FDSLTKLTYLSLGYNE  144 (270)
T ss_dssp             CSSCCCC-CCTTTTTTCSSCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSC
T ss_pred             CCCcCCc-CCHhHcccccCCCEEECCCCccCeeCHHH-hCcCcCCCEEECCCCc
Confidence            9999988 65    33444555444444333333333 5666666666666654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.70  E-value=3.7e-17  Score=152.48  Aligned_cols=188  Identities=17%  Similarity=0.183  Sum_probs=111.1

Q ss_pred             CCCeeEEEEeecCCCccccccc--cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEE
Q 047903          117 RKNVKRINVFEKQSDFAHLDDY--DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTL  194 (430)
Q Consensus       117 ~~~~r~L~l~~~~~~~~~~~~~--~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L  194 (430)
                      ..++++|.+. ++.+..++ .+  +++|+  +|++++|.++.++. ++.+++|++|++++|.++.+| .+ +++++|++|
T Consensus        40 l~~L~~L~l~-~~~i~~l~-~~~~l~~L~--~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~-~~l~~L~~L  112 (308)
T 1h6u_A           40 LDGITTLSAF-GTGVTTIE-GVQYLNNLI--GLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AI-AGLQSIKTL  112 (308)
T ss_dssp             HHTCCEEECT-TSCCCCCT-TGGGCTTCC--EEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GG-TTCTTCCEE
T ss_pred             cCCcCEEEee-CCCccCch-hhhccCCCC--EEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hh-cCCCCCCEE
Confidence            4456777776 55555444 33  66677  77777777776666 667777777777777777664 35 777777777


Q ss_pred             ecCCCCccccchhhccCcccceeecCCcccCCCcC--ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEcccccc
Q 047903          195 DMPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPR--KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYY  272 (430)
Q Consensus       195 ~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp--~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  272 (430)
                      ++++|.++.+|. +..+++|++|++++|.+.. +|  +.+++|+.|.+.++..  ..... +..+++|+.|++++|.  .
T Consensus       113 ~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l--~~~~~-l~~l~~L~~L~l~~n~--l  185 (308)
T 1h6u_A          113 DLTSTQITDVTP-LAGLSNLQVLYLDLNQITN-ISPLAGLTNLQYLSIGNAQV--SDLTP-LANLSKLTTLKADDNK--I  185 (308)
T ss_dssp             ECTTSCCCCCGG-GTTCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECCSSCC--CCCGG-GTTCTTCCEEECCSSC--C
T ss_pred             ECCCCCCCCchh-hcCCCCCCEEECCCCccCc-CccccCCCCccEEEccCCcC--CCChh-hcCCCCCCEEECCCCc--c
Confidence            777777776665 6777777777777777766 44  5555566555554433  22333 5566666666666664  1


Q ss_pred             HHHHHHHhcCCCCCCEEEEecCCCCCCceEEEEEcccccCCcceEEEEccccCC
Q 047903          273 QSLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELME  326 (430)
Q Consensus       273 ~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~  326 (430)
                      .. ++ .+..+++|+.|++++    ..+..+. .+..+ ++|+.|++++|.+..
T Consensus       186 ~~-~~-~l~~l~~L~~L~L~~----N~l~~~~-~l~~l-~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          186 SD-IS-PLASLPNLIEVHLKN----NQISDVS-PLANT-SNLFIVTLTNQTITN  231 (308)
T ss_dssp             CC-CG-GGGGCTTCCEEECTT----SCCCBCG-GGTTC-TTCCEEEEEEEEEEC
T ss_pred             Cc-Ch-hhcCCCCCCEEEccC----CccCccc-cccCC-CCCCEEEccCCeeec
Confidence            11 11 145555666666653    2222221 23444 566666666665543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.70  E-value=6.8e-17  Score=150.65  Aligned_cols=192  Identities=18%  Similarity=0.180  Sum_probs=155.9

Q ss_pred             cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceee
Q 047903          139 DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLN  218 (430)
Q Consensus       139 ~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~  218 (430)
                      +++|+  .|++++|.++.+| .+..+++|++|++++|.++.++. + .++++|++|++++|.++.+| .+.++++|++|+
T Consensus        40 l~~L~--~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~-~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~  113 (308)
T 1h6u_A           40 LDGIT--TLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-L-KNLTKITELELSGNPLKNVS-AIAGLQSIKTLD  113 (308)
T ss_dssp             HHTCC--EEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-G-TTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred             cCCcC--EEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-H-ccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence            77888  9999999999887 68899999999999999999987 6 99999999999999999887 489999999999


Q ss_pred             cCCcccCCCcC--ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCC
Q 047903          219 FGSITLPAHPR--KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESK  296 (430)
Q Consensus       219 l~~~~~~~~lp--~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  296 (430)
                      +++|.+.. +|  ..+++|+.|.+.++..  ..... ++.+++|+.|++++|.  ... ++. +..+++|+.|++++   
T Consensus       114 l~~n~l~~-~~~l~~l~~L~~L~l~~n~l--~~~~~-l~~l~~L~~L~l~~n~--l~~-~~~-l~~l~~L~~L~l~~---  182 (308)
T 1h6u_A          114 LTSTQITD-VTPLAGLSNLQVLYLDLNQI--TNISP-LAGLTNLQYLSIGNAQ--VSD-LTP-LANLSKLTTLKADD---  182 (308)
T ss_dssp             CTTSCCCC-CGGGTTCTTCCEEECCSSCC--CCCGG-GGGCTTCCEEECCSSC--CCC-CGG-GTTCTTCCEEECCS---
T ss_pred             CCCCCCCC-chhhcCCCCCCEEECCCCcc--CcCcc-ccCCCCccEEEccCCc--CCC-Chh-hcCCCCCCEEECCC---
Confidence            99999998 77  7888888888777654  33445 7889999999999986  222 222 78899999999985   


Q ss_pred             CCCceEEEEEcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceE
Q 047903          297 MPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWT  363 (430)
Q Consensus       297 ~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~  363 (430)
                       ..++.+. .+..+ ++|++|++++|.+...+            ....+++|+.|++++ +.+...+
T Consensus       183 -n~l~~~~-~l~~l-~~L~~L~L~~N~l~~~~------------~l~~l~~L~~L~l~~-N~i~~~~  233 (308)
T 1h6u_A          183 -NKISDIS-PLASL-PNLIEVHLKNNQISDVS------------PLANTSNLFIVTLTN-QTITNQP  233 (308)
T ss_dssp             -SCCCCCG-GGGGC-TTCCEEECTTSCCCBCG------------GGTTCTTCCEEEEEE-EEEECCC
T ss_pred             -CccCcCh-hhcCC-CCCCEEEccCCccCccc------------cccCCCCCCEEEccC-CeeecCC
Confidence             3344332 35677 99999999999886532            246789999999998 3344433

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.70  E-value=1.5e-17  Score=149.23  Aligned_cols=206  Identities=15%  Similarity=0.077  Sum_probs=136.8

Q ss_pred             CccccccccCcceEEEEEecCCccccccc-ccccccCCceeecCCCC-CcccChHhhhcCCCccEEecCC-CCccccch-
Q 047903          131 DFAHLDDYDSHMHSLVLDLGSLVLIHYLS-GIENLFLLRYLKLNIPS-LKSLPSPLLSNLLNLYTLDMPF-SYIDHTAD-  206 (430)
Q Consensus       131 ~~~~~~~~~~~L~~L~L~l~~~~l~~lp~-~~~~l~~L~~L~L~~~~-i~~lp~~i~~~L~~L~~L~L~~-~~l~~lp~-  206 (430)
                      ...+|. +.++++  .|++++|.++.+|. .|+++++|++|++++|. ++.+|+..|+++++|++|++++ |.++.+|. 
T Consensus        23 l~~ip~-~~~~l~--~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~   99 (239)
T 2xwt_C           23 IQRIPS-LPPSTQ--TLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD   99 (239)
T ss_dssp             CSSCCC-CCTTCC--EEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred             ccccCC-CCCccc--EEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence            445666 666888  89999999998875 78899999999999997 8888875559999999999998 78888875 


Q ss_pred             hhccCcccceeecCCcccCCCcC--ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEcc-ccccHHHHHHHhcCC
Q 047903          207 EFWKMNNLRHLNFGSITLPAHPR--KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGD-LSYYQSLLSQSLCTL  283 (430)
Q Consensus       207 ~i~~L~~L~~L~l~~~~~~~~lp--~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~l~~l  283 (430)
                      .+.++++|++|++++|.+.+ +|  ..+++|+                      .|+.|+++++ .  .....+..+..+
T Consensus       100 ~f~~l~~L~~L~l~~n~l~~-lp~~~~l~~L~----------------------~L~~L~l~~N~~--l~~i~~~~~~~l  154 (239)
T 2xwt_C          100 ALKELPLLKFLGIFNTGLKM-FPDLTKVYSTD----------------------IFFILEITDNPY--MTSIPVNAFQGL  154 (239)
T ss_dssp             SEECCTTCCEEEEEEECCCS-CCCCTTCCBCC----------------------SEEEEEEESCTT--CCEECTTTTTTT
T ss_pred             HhCCCCCCCEEeCCCCCCcc-ccccccccccc----------------------cccEEECCCCcc--hhhcCcccccch
Confidence            47889999999999998887 65  3333333                      1225555554 2  111112234455


Q ss_pred             CCCC-EEEEecCCCCCCceEEEEEcccccCCcceEEEEccc-cCCcccccccCCCeEEEcCCCC-CcccEEEEeeCCCCC
Q 047903          284 TCLE-SLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTE-LMEDPKSRASSSRKLTCGSDGF-PNLKVLHLKSMLWLE  360 (430)
Q Consensus       284 ~~L~-~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~-l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~  360 (430)
                      ++|+ .|++++    ..++.+.-..... ++|+.|++++|. +...+          ......+ ++|+.|++++ +.+.
T Consensus       155 ~~L~~~L~l~~----n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~----------~~~~~~l~~~L~~L~l~~-N~l~  218 (239)
T 2xwt_C          155 CNETLTLKLYN----NGFTSVQGYAFNG-TKLDAVYLNKNKYLTVID----------KDAFGGVYSGPSLLDVSQ-TSVT  218 (239)
T ss_dssp             BSSEEEEECCS----CCCCEECTTTTTT-CEEEEEECTTCTTCCEEC----------TTTTTTCSBCCSEEECTT-CCCC
T ss_pred             hcceeEEEcCC----CCCcccCHhhcCC-CCCCEEEcCCCCCcccCC----------HHHhhccccCCcEEECCC-Cccc
Confidence            5555 555552    2334332111223 577888888884 54321          0012445 7888888887 5666


Q ss_pred             ceEEcCCccccccEeEEeecCC
Q 047903          361 EWTMGIGAMPKLECLIINPCAY  382 (430)
Q Consensus       361 ~~~~~~~~~~~L~~L~l~~c~~  382 (430)
                      .++..  .+++|+.|.+.++..
T Consensus       219 ~l~~~--~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          219 ALPSK--GLEHLKELIARNTWT  238 (239)
T ss_dssp             CCCCT--TCTTCSEEECTTC--
T ss_pred             cCChh--HhccCceeeccCccC
Confidence            66543  688888888887643

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.70  E-value=2.7e-17  Score=151.91  Aligned_cols=167  Identities=19%  Similarity=0.105  Sum_probs=114.4

Q ss_pred             CCCeeEEEEeecCCCccccccccCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCccEEe
Q 047903          117 RKNVKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLD  195 (430)
Q Consensus       117 ~~~~r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~  195 (430)
                      ..+++.+.+. ++....++..+.++++  +|++++|.++.++ ..|..+++|++|++++|.++.+|. . +.+++|++|+
T Consensus         9 l~~l~~l~~~-~~~l~~ip~~~~~~l~--~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~L~   83 (290)
T 1p9a_G            9 VASHLEVNCD-KRNLTALPPDLPKDTT--ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVLGTLD   83 (290)
T ss_dssp             STTCCEEECT-TSCCSSCCSCCCTTCC--EEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTCCEEE
T ss_pred             cCCccEEECC-CCCCCcCCCCCCCCCC--EEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-C-CCCCcCCEEE
Confidence            4567778877 6677777777777888  8888888888664 678888888889988888888764 3 7888888999


Q ss_pred             cCCCCccccchhhccCcccceeecCCcccCCCcC-c---cCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccc
Q 047903          196 MPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPR-K---YCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSY  271 (430)
Q Consensus       196 L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp-~---~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  271 (430)
                      +++|.++.+|..+..+++|++|++++|.+.. +| +   .+++|+.|.+.++......... +..+++|+.|++++|.  
T Consensus        84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~--  159 (290)
T 1p9a_G           84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGL-LTPTPKLEKLSLANNN--  159 (290)
T ss_dssp             CCSSCCSSCCCCTTTCTTCCEEECCSSCCCC-CCSSTTTTCTTCCEEECTTSCCCCCCTTT-TTTCTTCCEEECTTSC--
T ss_pred             CCCCcCCcCchhhccCCCCCEEECCCCcCcc-cCHHHHcCCCCCCEEECCCCCCCccChhh-cccccCCCEEECCCCc--
Confidence            9888888888888888888888888888887 55 3   3344444444433322222233 5666677777776664  


Q ss_pred             cHHHHHHHhcCCCCCCEEEEe
Q 047903          272 YQSLLSQSLCTLTCLESLKLV  292 (430)
Q Consensus       272 ~~~~~~~~l~~l~~L~~L~l~  292 (430)
                      .....+..+..+++|+.|+++
T Consensus       160 l~~l~~~~~~~l~~L~~L~L~  180 (290)
T 1p9a_G          160 LTELPAGLLNGLENLDTLLLQ  180 (290)
T ss_dssp             CSCCCTTTTTTCTTCCEEECC
T ss_pred             CCccCHHHhcCcCCCCEEECC
Confidence            221111233445555555555

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.68  E-value=3.4e-17  Score=146.97  Aligned_cols=205  Identities=17%  Similarity=0.226  Sum_probs=155.6

Q ss_pred             ccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCC-ccccch-hhccCcccceeecCC-cccCCCcCc
Q 047903          154 LIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSY-IDHTAD-EFWKMNNLRHLNFGS-ITLPAHPRK  230 (430)
Q Consensus       154 l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~-l~~lp~-~i~~L~~L~~L~l~~-~~~~~~lp~  230 (430)
                      ++.+|. +..  +|++|++++|+++.+|+..|+++++|++|++++|. ++.+|. .+.++++|++|++++ |.+.. +| 
T Consensus        23 l~~ip~-~~~--~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~-i~-   97 (239)
T 2xwt_C           23 IQRIPS-LPP--STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY-ID-   97 (239)
T ss_dssp             CSSCCC-CCT--TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE-EC-
T ss_pred             ccccCC-CCC--cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE-cC-
Confidence            677777 443  89999999999999987655999999999999996 998886 588999999999998 77765 32 


Q ss_pred             cCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCC---EEEEecCCCCCCceEEEE-E
Q 047903          231 YCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLE---SLKLVSESKMPTLSKIVL-V  306 (430)
Q Consensus       231 ~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~---~L~l~~~~~~~~L~~L~l-~  306 (430)
                                         ... +..+++|++|++.++.  .. .++. +..+++|+   .|++++   .+.++.+.- +
T Consensus        98 -------------------~~~-f~~l~~L~~L~l~~n~--l~-~lp~-~~~l~~L~~L~~L~l~~---N~~l~~i~~~~  150 (239)
T 2xwt_C           98 -------------------PDA-LKELPLLKFLGIFNTG--LK-MFPD-LTKVYSTDIFFILEITD---NPYMTSIPVNA  150 (239)
T ss_dssp             -------------------TTS-EECCTTCCEEEEEEEC--CC-SCCC-CTTCCBCCSEEEEEEES---CTTCCEECTTT
T ss_pred             -------------------HHH-hCCCCCCCEEeCCCCC--Cc-cccc-cccccccccccEEECCC---CcchhhcCccc
Confidence                               223 6778888999998885  22 2333 66777777   999986   336776653 3


Q ss_pred             cccccCCcc-eEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEc-CCcc-ccccEeEEeecCCC
Q 047903          307 EYQFPPRLT-HLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMG-IGAM-PKLECLIINPCAYL  383 (430)
Q Consensus       307 ~~~lp~~L~-~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~-~~L~~L~l~~c~~l  383 (430)
                      +..+ ++|+ .|++++|.+...|           ......++|+.|+++++.+++.++.. ...+ ++|+.|+++++ .+
T Consensus       151 ~~~l-~~L~~~L~l~~n~l~~i~-----------~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l  217 (239)
T 2xwt_C          151 FQGL-CNETLTLKLYNNGFTSVQ-----------GYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SV  217 (239)
T ss_dssp             TTTT-BSSEEEEECCSCCCCEEC-----------TTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CC
T ss_pred             ccch-hcceeEEEcCCCCCcccC-----------HhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-cc
Confidence            6678 8999 9999999875332           11112268999999985457777543 3567 99999999995 58


Q ss_pred             CcCCCCCCCCCCCCEEEEecCh
Q 047903          384 KKMPEQPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       384 ~~lp~~l~~l~~L~~L~l~~~~  405 (430)
                      +.+|..  .+++|+.|+++++.
T Consensus       218 ~~l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          218 TALPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             CCCCCT--TCTTCSEEECTTC-
T ss_pred             ccCChh--HhccCceeeccCcc
Confidence            888865  68899999999876

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.68  E-value=3.7e-17  Score=149.70  Aligned_cols=147  Identities=22%  Similarity=0.231  Sum_probs=100.9

Q ss_pred             CCCeeEEEEeecCCCccccccc-cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEe
Q 047903          117 RKNVKRINVFEKQSDFAHLDDY-DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLD  195 (430)
Q Consensus       117 ~~~~r~L~l~~~~~~~~~~~~~-~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~  195 (430)
                      ..+++.+.+. ++.+..++.-. +++|+  +|++++|.++.++ .++.+++|++|++++|.++.+|...|+++++|++|+
T Consensus        40 l~~L~~L~l~-~~~i~~~~~l~~l~~L~--~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           40 LNSIDQIIAN-NSDIKSVQGIQYLPNVR--YLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV  115 (272)
T ss_dssp             HTTCCEEECT-TSCCCCCTTGGGCTTCC--EEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccceeeeeeC-CCCcccccccccCCCCc--EEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence            4567778777 66555443322 78888  8888888887754 677888888888888888888766558888888888


Q ss_pred             cCCCCccccchh-hccCcccceeecCCcccCCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903          196 MPFSYIDHTADE-FWKMNNLRHLNFGSITLPAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL  269 (430)
Q Consensus       196 L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  269 (430)
                      +++|.++.+|.. ++++++|++|++++|.+.+ +|    +.+++|+.|.+.++......... ++.+++|+.|++++|.
T Consensus       116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~N~  192 (272)
T 3rfs_A          116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQSLPEGV-FDKLTQLKDLRLYQNQ  192 (272)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSC
T ss_pred             CCCCcCCccCHHHhccCCCCCEEECCCCccCc-cCHHHhccCccCCEEECCCCCcCccCHHH-hcCCccCCEEECCCCc
Confidence            888888877665 6788888888888888776 54    33444555544444333222333 5556666666666654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.67  E-value=3.5e-18  Score=161.39  Aligned_cols=241  Identities=16%  Similarity=0.159  Sum_probs=164.8

Q ss_pred             CeeEEEEeecCCCccccccc----cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcc--cChHhhhcCCCcc
Q 047903          119 NVKRINVFEKQSDFAHLDDY----DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKS--LPSPLLSNLLNLY  192 (430)
Q Consensus       119 ~~r~L~l~~~~~~~~~~~~~----~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~--lp~~i~~~L~~L~  192 (430)
                      ..+++.+. .+...  +..+    .++++  .|++++|.+...+..+..+++|++|++++|.++.  +|..+ .++++|+
T Consensus        48 ~~~~l~l~-~~~~~--~~~~~~~~~~~l~--~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~-~~~~~L~  121 (336)
T 2ast_B           48 LWQTLDLT-GKNLH--PDVTGRLLSQGVI--AFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGIL-SQCSKLQ  121 (336)
T ss_dssp             TSSEEECT-TCBCC--HHHHHHHHHTTCS--EEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHH-TTBCCCS
T ss_pred             hheeeccc-cccCC--HHHHHhhhhccce--EEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHH-hhCCCCC
Confidence            35677776 44332  2222    37888  8899999988777667788999999999998773  66666 8999999


Q ss_pred             EEecCCCCcc-ccchhhccCcccceeecCCc-ccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEcccc
Q 047903          193 TLDMPFSYID-HTADEFWKMNNLRHLNFGSI-TLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLS  270 (430)
Q Consensus       193 ~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~-~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  270 (430)
                      +|++++|.+. ..|..++++++|++|++++| .+..                    ...... +..+++|++|++++|..
T Consensus       122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~--------------------~~l~~~-~~~~~~L~~L~l~~~~~  180 (336)
T 2ast_B          122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE--------------------FALQTL-LSSCSRLDELNLSWCFD  180 (336)
T ss_dssp             EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH--------------------HHHHHH-HHHCTTCCEEECCCCTT
T ss_pred             EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCH--------------------HHHHHH-HhcCCCCCEEcCCCCCC
Confidence            9999999777 56777888999999988888 4443                    012333 77789999999999832


Q ss_pred             ccHHHHHHHhcCCC-CCCEEEEecCCCCC-CceE--EEEEcccccCCcceEEEEccc-cCCcccccccCCCeEEEcCCCC
Q 047903          271 YYQSLLSQSLCTLT-CLESLKLVSESKMP-TLSK--IVLVEYQFPPRLTHLSFSNTE-LMEDPKSRASSSRKLTCGSDGF  345 (430)
Q Consensus       271 ~~~~~~~~~l~~l~-~L~~L~l~~~~~~~-~L~~--L~l~~~~lp~~L~~L~L~~~~-l~~~~~~~~~~~~~~~~~~~~~  345 (430)
                      .....++..+..++ +|+.|++++   +. .+..  +.-.+..+ ++|++|++++|. +....          ......+
T Consensus       181 l~~~~~~~~~~~l~~~L~~L~l~~---~~~~~~~~~l~~~~~~~-~~L~~L~l~~~~~l~~~~----------~~~l~~l  246 (336)
T 2ast_B          181 FTEKHVQVAVAHVSETITQLNLSG---YRKNLQKSDLSTLVRRC-PNLVHLDLSDSVMLKNDC----------FQEFFQL  246 (336)
T ss_dssp             CCHHHHHHHHHHSCTTCCEEECCS---CGGGSCHHHHHHHHHHC-TTCSEEECTTCTTCCGGG----------GGGGGGC
T ss_pred             cChHHHHHHHHhcccCCCEEEeCC---CcccCCHHHHHHHHhhC-CCCCEEeCCCCCcCCHHH----------HHHHhCC
Confidence            22234677788899 999999986   32 2221  11134567 999999999998 43221          1123467


Q ss_pred             CcccEEEEeeCCCCCceE-EcCCccccccEeEEeecCCCCcCCC-CCCCC-CCCCEEEEecCh
Q 047903          346 PNLKVLHLKSMLWLEEWT-MGIGAMPKLECLIINPCAYLKKMPE-QPWCI-KSLNKFNCWWPQ  405 (430)
Q Consensus       346 ~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~c~~l~~lp~-~l~~l-~~L~~L~l~~~~  405 (430)
                      ++|++|+++++..+.... ...+.+++|+.|++.+|     ++. ++..+ .+++.|++++|.
T Consensus       247 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n~  304 (336)
T 2ast_B          247 NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQINCSH  304 (336)
T ss_dssp             TTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEESCCC
T ss_pred             CCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEeccc
Confidence            899999999876433221 12356899999999998     332 23333 236666676554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.67  E-value=6.8e-17  Score=149.24  Aligned_cols=192  Identities=17%  Similarity=0.103  Sum_probs=141.1

Q ss_pred             cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceee
Q 047903          139 DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLN  218 (430)
Q Consensus       139 ~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~  218 (430)
                      +++++  .++++++.++.+|..+.  +++++|++++|.++.++...|.++++|++|++++|.++.+|.. +.+++|++|+
T Consensus         9 l~~l~--~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~   83 (290)
T 1p9a_G            9 VASHL--EVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLD   83 (290)
T ss_dssp             STTCC--EEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEE
T ss_pred             cCCcc--EEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEE
Confidence            55667  89999999999998765  6899999999999988655459999999999999999998874 8899999999


Q ss_pred             cCCcccCCCcC---ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCC
Q 047903          219 FGSITLPAHPR---KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSES  295 (430)
Q Consensus       219 l~~~~~~~~lp---~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  295 (430)
                      +++|.+.. +|   ..+++|+.|.+.++......+.. ++.+++|+.|++++|.  .....+..+..+++|+.|++++  
T Consensus        84 Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~-~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~~--  157 (290)
T 1p9a_G           84 LSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGA-LRGLGELQELYLKGNE--LKTLPPGLLTPTPKLEKLSLAN--  157 (290)
T ss_dssp             CCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSST-TTTCTTCCEEECTTSC--CCCCCTTTTTTCTTCCEEECTT--
T ss_pred             CCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHHH-HcCCCCCCEEECCCCC--CCccChhhcccccCCCEEECCC--
Confidence            99999987 88   56667777766665544344455 8888889999988886  3333334456777788888774  


Q ss_pred             CCCCceEEEE-EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEee
Q 047903          296 KMPTLSKIVL-VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKS  355 (430)
Q Consensus       296 ~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  355 (430)
                        ..++.+.- .+..+ ++|+.|++++|.+...|           ......++|+.+++.+
T Consensus       158 --N~l~~l~~~~~~~l-~~L~~L~L~~N~l~~ip-----------~~~~~~~~L~~l~L~~  204 (290)
T 1p9a_G          158 --NNLTELPAGLLNGL-ENLDTLLLQENSLYTIP-----------KGFFGSHLLPFAFLHG  204 (290)
T ss_dssp             --SCCSCCCTTTTTTC-TTCCEEECCSSCCCCCC-----------TTTTTTCCCSEEECCS
T ss_pred             --CcCCccCHHHhcCc-CCCCEEECCCCcCCccC-----------hhhcccccCCeEEeCC
Confidence              33443322 23456 77888888887765433           1123445677777765

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.66  E-value=5e-17  Score=148.84  Aligned_cols=202  Identities=18%  Similarity=0.143  Sum_probs=134.3

Q ss_pred             cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchh-hccCccccee
Q 047903          139 DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADE-FWKMNNLRHL  217 (430)
Q Consensus       139 ~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L  217 (430)
                      +++++  .|++++|.++.++ .++.+++|++|++++|.++.++ .+ +++++|++|++++|.++.+|.. ++++++|++|
T Consensus        40 l~~L~--~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           40 LNSID--QIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-AL-KELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HTTCC--EEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GG-TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             cccee--eeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hh-cCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence            67777  8889998887665 4788899999999999988874 56 8999999999999988888765 6889999999


Q ss_pred             ecCCcccCCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEec
Q 047903          218 NFGSITLPAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVS  293 (430)
Q Consensus       218 ~l~~~~~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~  293 (430)
                      ++++|.+.+ +|    +.+++|+.|.+.++......... ++.+++|+.|++++|.                        
T Consensus       115 ~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~------------------------  168 (272)
T 3rfs_A          115 VLVENQLQS-LPDGVFDKLTNLTYLNLAHNQLQSLPKGV-FDKLTNLTELDLSYNQ------------------------  168 (272)
T ss_dssp             ECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSC------------------------
T ss_pred             ECCCCcCCc-cCHHHhccCCCCCEEECCCCccCccCHHH-hccCccCCEEECCCCC------------------------
Confidence            999998887 44    23333444433333222222222 3444455555554442                        


Q ss_pred             CCCCCCceEEEE-EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEcCCccccc
Q 047903          294 ESKMPTLSKIVL-VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKL  372 (430)
Q Consensus       294 ~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L  372 (430)
                            ++.+.- .+..+ ++|+.|++++|.+...+          ......+++|+.|++++++ +      .+.+|+|
T Consensus       169 ------l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~----------~~~~~~l~~L~~L~l~~N~-~------~~~~~~l  224 (272)
T 3rfs_A          169 ------LQSLPEGVFDKL-TQLKDLRLYQNQLKSVP----------DGVFDRLTSLQYIWLHDNP-W------DCTCPGI  224 (272)
T ss_dssp             ------CCCCCTTTTTTC-TTCCEEECCSSCCSCCC----------TTTTTTCTTCCEEECCSSC-B------CCCTTTT
T ss_pred             ------cCccCHHHhcCC-ccCCEEECCCCcCCccC----------HHHHhCCcCCCEEEccCCC-c------cccCcHH
Confidence                  221110 23456 78888888888775432          0113567888888888742 2      2457788


Q ss_pred             cEeEEeecCCCCcCCCCCCCCCC
Q 047903          373 ECLIINPCAYLKKMPEQPWCIKS  395 (430)
Q Consensus       373 ~~L~l~~c~~l~~lp~~l~~l~~  395 (430)
                      +.|.+..+.....+|..++.++.
T Consensus       225 ~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          225 RYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             HHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             HHHHHHHHhCCCcccCcccccCC
Confidence            88888877666677877766554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.66  E-value=2.9e-16  Score=141.97  Aligned_cols=145  Identities=19%  Similarity=0.205  Sum_probs=96.7

Q ss_pred             eeEEEEeecCCCccccccccCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCccEEecCC
Q 047903          120 VKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPF  198 (430)
Q Consensus       120 ~r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~  198 (430)
                      .+++.+. +.....++..+.++++  .|++++|.++.++ ..++++++|++|++++|.++.+++..|.++++|++|++++
T Consensus        16 ~~~l~~~-~~~l~~~p~~~~~~l~--~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           16 KKEVDCQ-GKSLDSVPSGIPADTE--KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GTEEECT-TCCCSSCCSCCCTTCC--EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CeEEecC-CCCccccCCCCCCCCC--EEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            4456666 6666667776677788  8888888887665 4678888888888888888877665558888888888888


Q ss_pred             CCccccchh-hccCcccceeecCCcccCCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903          199 SYIDHTADE-FWKMNNLRHLNFGSITLPAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL  269 (430)
Q Consensus       199 ~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  269 (430)
                      |.++.+|.. +..+++|++|++++|.+.. +|    ..+++|+.|.+.++......... ++.+++|+.|++++|.
T Consensus        93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~  166 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGA-FDKLTNLQTLSLSTNQ  166 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSC
T ss_pred             CcccccChhHhcccCCCCEEEcCCCcCCC-cChhHhccCCcccEEECcCCcCCccCHHH-cCcCcCCCEEECCCCc
Confidence            888877654 6788888888888888876 55    22334444433333322222223 4555555555555553

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.65  E-value=1.7e-17  Score=163.56  Aligned_cols=36  Identities=14%  Similarity=0.145  Sum_probs=26.7

Q ss_pred             cccccEeEEeecCCCC-----cCCCCCCCCCCCCEEEEecCh
Q 047903          369 MPKLECLIINPCAYLK-----KMPEQPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       369 ~~~L~~L~l~~c~~l~-----~lp~~l~~l~~L~~L~l~~~~  405 (430)
                      .++|++|++++|. ++     .+|..+..+++|++|++++|+
T Consensus       369 ~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          369 GSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             TCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             CCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence            4578888888774 44     566667777888888888877

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.65  E-value=1.5e-16  Score=151.08  Aligned_cols=233  Identities=14%  Similarity=0.044  Sum_probs=164.0

Q ss_pred             EEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCcc-ccchh-hccCcccce-eecCCc
Q 047903          146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYID-HTADE-FWKMNNLRH-LNFGSI  222 (430)
Q Consensus       146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~-~lp~~-i~~L~~L~~-L~l~~~  222 (430)
                      +++.+++.++.+|..+  .+++++|+|++|+|+.+|+..|+++++|++|+|++|.+. .+|.+ +.+++++++ +.+++|
T Consensus        13 ~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N   90 (350)
T 4ay9_X           13 VFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   90 (350)
T ss_dssp             EEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred             EEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence            6788889999999876  368999999999999999876699999999999999864 56654 788888776 556678


Q ss_pred             ccCCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHH-HHhcCC-CCCCEEEEecCCC
Q 047903          223 TLPAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLS-QSLCTL-TCLESLKLVSESK  296 (430)
Q Consensus       223 ~~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~l-~~L~~L~l~~~~~  296 (430)
                      ++.. +|    ..+++|+.|.+.++......... +....++..|++.++.  ....++ ..+..+ ..++.|+++    
T Consensus        91 ~l~~-l~~~~f~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~l~~l~l~~~~--~i~~l~~~~f~~~~~~l~~L~L~----  162 (350)
T 4ay9_X           91 NLLY-INPEAFQNLPNLQYLLISNTGIKHLPDVH-KIHSLQKVLLDIQDNI--NIHTIERNSFVGLSFESVILWLN----  162 (350)
T ss_dssp             TCCE-ECTTSBCCCTTCCEEEEEEECCSSCCCCT-TCCBSSCEEEEEESCT--TCCEECTTSSTTSBSSCEEEECC----
T ss_pred             cccc-cCchhhhhccccccccccccccccCCchh-hcccchhhhhhhcccc--ccccccccchhhcchhhhhhccc----
Confidence            8877 65    45666777766666542222223 4445566677776653  222221 233444 357777777    


Q ss_pred             CCCceEEEEEcccccCCcceEEEEcc-ccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEcCCccccccEe
Q 047903          297 MPTLSKIVLVEYQFPPRLTHLSFSNT-ELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECL  375 (430)
Q Consensus       297 ~~~L~~L~l~~~~lp~~L~~L~L~~~-~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L  375 (430)
                      ...++.+.-..... .+|++|++.++ .+...|      .    .....+++|+.|++++ ++++.++.  +.+.+|+.|
T Consensus       163 ~N~i~~i~~~~f~~-~~L~~l~l~~~n~l~~i~------~----~~f~~l~~L~~LdLs~-N~l~~lp~--~~~~~L~~L  228 (350)
T 4ay9_X          163 KNGIQEIHNSAFNG-TQLDELNLSDNNNLEELP------N----DVFHGASGPVILDISR-TRIHSLPS--YGLENLKKL  228 (350)
T ss_dssp             SSCCCEECTTSSTT-EEEEEEECTTCTTCCCCC------T----TTTTTEECCSEEECTT-SCCCCCCS--SSCTTCCEE
T ss_pred             cccccCCChhhccc-cchhHHhhccCCcccCCC------H----HHhccCcccchhhcCC-CCcCccCh--hhhccchHh
Confidence            35566553222234 57888888754 443322      0    0135678999999998 56777764  458999999


Q ss_pred             EEeecCCCCcCCCCCCCCCCCCEEEEec
Q 047903          376 IINPCAYLKKMPEQPWCIKSLNKFNCWW  403 (430)
Q Consensus       376 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~  403 (430)
                      .+.+|..++.+|. +..+++|+.+++..
T Consensus       229 ~~l~~~~l~~lP~-l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          229 RARSTYNLKKLPT-LEKLVALMEASLTY  255 (350)
T ss_dssp             ECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred             hhccCCCcCcCCC-chhCcChhhCcCCC
Confidence            9999999999995 88899999999964

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.64  E-value=4.7e-16  Score=143.75  Aligned_cols=169  Identities=19%  Similarity=0.152  Sum_probs=95.9

Q ss_pred             cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceee
Q 047903          139 DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLN  218 (430)
Q Consensus       139 ~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~  218 (430)
                      +++|+  .|++++|.+..++. ++.+++|++|++++|+++.++. + +++++|++|++++|.++.+|. ++.+++|++|+
T Consensus        45 l~~L~--~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l-~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~  118 (291)
T 1h6t_A           45 LNSID--QIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-L-ANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS  118 (291)
T ss_dssp             HHTCC--EEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-G-TTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEE
T ss_pred             cCccc--EEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-c-ccCCCCCEEECCCCcCCCChh-hccCCCCCEEE
Confidence            44444  55555555555432 5555556666666655555544 4 555666666666555555544 55555566666


Q ss_pred             cCCcccCCCcC--ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCC
Q 047903          219 FGSITLPAHPR--KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESK  296 (430)
Q Consensus       219 l~~~~~~~~lp--~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  296 (430)
                      +++|.+.. ++  ..+++|+.|.+.++....  +.. ++.+++|+.|++++|.  ..... . +..+++|+.|++++   
T Consensus       119 L~~n~i~~-~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~~N~--l~~~~-~-l~~l~~L~~L~L~~---  187 (291)
T 1h6t_A          119 LEHNGISD-INGLVHLPQLESLYLGNNKITD--ITV-LSRLTKLDTLSLEDNQ--ISDIV-P-LAGLTKLQNLYLSK---  187 (291)
T ss_dssp             CTTSCCCC-CGGGGGCTTCCEEECCSSCCCC--CGG-GGGCTTCSEEECCSSC--CCCCG-G-GTTCTTCCEEECCS---
T ss_pred             CCCCcCCC-ChhhcCCCCCCEEEccCCcCCc--chh-hccCCCCCEEEccCCc--cccch-h-hcCCCccCEEECCC---
Confidence            66555555 44  445555555444443211  244 6677777777777775  22111 1 66777777777764   


Q ss_pred             CCCceEEEEEcccccCCcceEEEEccccCCc
Q 047903          297 MPTLSKIVLVEYQFPPRLTHLSFSNTELMED  327 (430)
Q Consensus       297 ~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~  327 (430)
                       ..++.+. .+..+ ++|+.|++++|.+...
T Consensus       188 -N~i~~l~-~l~~l-~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          188 -NHISDLR-ALAGL-KNLDVLELFSQECLNK  215 (291)
T ss_dssp             -SCCCBCG-GGTTC-TTCSEEEEEEEEEECC
T ss_pred             -CcCCCCh-hhccC-CCCCEEECcCCcccCC
Confidence             3344332 35566 7888888888876543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.63  E-value=2.9e-17  Score=162.02  Aligned_cols=148  Identities=18%  Similarity=0.127  Sum_probs=78.1

Q ss_pred             cceEEEEEecCCccc-----ccccccccccCCceeecCCCCCccc-ChHh----hhcCCCccEEecCCCCccc-----cc
Q 047903          141 HMHSLVLDLGSLVLI-----HYLSGIENLFLLRYLKLNIPSLKSL-PSPL----LSNLLNLYTLDMPFSYIDH-----TA  205 (430)
Q Consensus       141 ~L~~L~L~l~~~~l~-----~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i----~~~L~~L~~L~L~~~~l~~-----lp  205 (430)
                      +|+  +|++++|.++     .++..+..+++|++|++++|.++.. +..+    +...++|++|++++|.++.     ++
T Consensus        86 ~L~--~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  163 (461)
T 1z7x_W           86 KIQ--KLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  163 (461)
T ss_dssp             CCC--EEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             cee--EEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence            455  6666666655     3355566666666666666665532 2222    1224456666666665553     34


Q ss_pred             hhhccCcccceeecCCcccCCCcC--------ccCCCCcccceeecCCCCc----chhhhcCCCCCCceEEEEccccccH
Q 047903          206 DEFWKMNNLRHLNFGSITLPAHPR--------KYCRSLENLNFISALHPCC----CTEDILGRLPNLRNLRIWGDLSYYQ  273 (430)
Q Consensus       206 ~~i~~L~~L~~L~l~~~~~~~~lp--------~~l~~L~~L~~~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~  273 (430)
                      ..+..+++|++|++++|.+....+        ...++|+.|.+.++.....    .+.. +..+++|++|+++++.  ..
T Consensus       164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~--l~  240 (461)
T 1z7x_W          164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI-VASKASLRELALGSNK--LG  240 (461)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH-HHHCTTCCEEECCSSB--CH
T ss_pred             HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH-HHhCCCccEEeccCCc--CC
Confidence            445566667777776666544211        1244666666555543222    1233 5566777777777664  22


Q ss_pred             HH----HHH-HhcCCCCCCEEEEec
Q 047903          274 SL----LSQ-SLCTLTCLESLKLVS  293 (430)
Q Consensus       274 ~~----~~~-~l~~l~~L~~L~l~~  293 (430)
                      ..    +.. ....+++|+.|++++
T Consensus       241 ~~~~~~l~~~~~~~~~~L~~L~L~~  265 (461)
T 1z7x_W          241 DVGMAELCPGLLHPSSRLRTLWIWE  265 (461)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             hHHHHHHHHHHhcCCCCceEEECcC
Confidence            21    112 222456666666654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.62  E-value=8e-16  Score=139.02  Aligned_cols=141  Identities=21%  Similarity=0.229  Sum_probs=101.9

Q ss_pred             EEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchh-hccCcccceeecCCccc
Q 047903          146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADE-FWKMNNLRHLNFGSITL  224 (430)
Q Consensus       146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~  224 (430)
                      .++++++.++.+|..+.  .+++.|++++|.++.++...|+++++|++|++++|.++.++.. +.++++|++|++++|.+
T Consensus        18 ~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   95 (251)
T 3m19_A           18 EVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL   95 (251)
T ss_dssp             EEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             EEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcc
Confidence            89999999999998776  5899999999999988765459999999999999999988665 89999999999999999


Q ss_pred             CCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEe
Q 047903          225 PAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLV  292 (430)
Q Consensus       225 ~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~  292 (430)
                      .. +|    ..+++|+.|.+.++......... +..+++|+.|++++|.  .....+..+..+++|+.|+++
T Consensus        96 ~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L~  163 (251)
T 3m19_A           96 AS-LPLGVFDHLTQLDKLYLGGNQLKSLPSGV-FDRLTKLKELRLNTNQ--LQSIPAGAFDKLTNLQTLSLS  163 (251)
T ss_dssp             CC-CCTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECC
T ss_pred             cc-cChhHhcccCCCCEEEcCCCcCCCcChhH-hccCCcccEEECcCCc--CCccCHHHcCcCcCCCEEECC
Confidence            88 65    34455555555444433223333 5666777777777664  222222234455555555554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.61  E-value=1.2e-15  Score=155.27  Aligned_cols=279  Identities=14%  Similarity=0.085  Sum_probs=161.5

Q ss_pred             CCeeEEEEeecCCC-c--cccccc--cCcceEEEEEecCCcccc-----cccccccccCCceeecCCCCCc-----ccCh
Q 047903          118 KNVKRINVFEKQSD-F--AHLDDY--DSHMHSLVLDLGSLVLIH-----YLSGIENLFLLRYLKLNIPSLK-----SLPS  182 (430)
Q Consensus       118 ~~~r~L~l~~~~~~-~--~~~~~~--~~~L~~L~L~l~~~~l~~-----lp~~~~~l~~L~~L~L~~~~i~-----~lp~  182 (430)
                      .++++|.+. .+.. .  .+....  +++|+  +|++++|.++.     ++.....+++|++|++++|.++     .++.
T Consensus       138 ~~L~~L~L~-~~~~~~~~~l~~~~~~~~~L~--~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~  214 (592)
T 3ogk_B          138 DDLETLKLD-KCSGFTTDGLLSIVTHCRKIK--TLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLET  214 (592)
T ss_dssp             GGCCEEEEE-SCEEEEHHHHHHHHHHCTTCS--EEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHH
T ss_pred             ccCcEEECc-CCCCcCHHHHHHHHhhCCCCC--EEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHH
Confidence            348899888 5431 1  111111  68888  89999998653     3334567888999999998876     3344


Q ss_pred             HhhhcCCCccEEecCCCCccccchhhccCcccceeecCCcccC--------------------------CCcC---ccCC
Q 047903          183 PLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGSITLP--------------------------AHPR---KYCR  233 (430)
Q Consensus       183 ~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~--------------------------~~lp---~~l~  233 (430)
                      .+ .++++|++|++++|.+..+|..+.++++|++|+++++...                          ..+|   ..++
T Consensus       215 ~~-~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~  293 (592)
T 3ogk_B          215 IA-RNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAA  293 (592)
T ss_dssp             HH-HHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGG
T ss_pred             HH-hhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcC
Confidence            44 7889999999999988888888888888888888743221                          0123   3344


Q ss_pred             CCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEec----------CCC-------
Q 047903          234 SLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVS----------ESK-------  296 (430)
Q Consensus       234 ~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~----------~~~-------  296 (430)
                      +|+.|.+.++......+...++.+++|++|++.++-  ....++.....+++|+.|++.+          ...       
T Consensus       294 ~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~--~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~  371 (592)
T 3ogk_B          294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVI--GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI  371 (592)
T ss_dssp             GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGG--HHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH
T ss_pred             CCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCcc--CHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHH
Confidence            555555555442222232225777888888887442  3344444556677888888872          111       


Q ss_pred             -----CCCceEEEE-----------Ecc-cccCCcceEEEEc----cccCCccc--------ccccCCCeEEEc------
Q 047903          297 -----MPTLSKIVL-----------VEY-QFPPRLTHLSFSN----TELMEDPK--------SRASSSRKLTCG------  341 (430)
Q Consensus       297 -----~~~L~~L~l-----------~~~-~lp~~L~~L~L~~----~~l~~~~~--------~~~~~~~~~~~~------  341 (430)
                           +++|+.|.+           .+. .+ ++|++|++++    +.+...|.        ........+...      
T Consensus       372 ~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~-~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l  450 (592)
T 3ogk_B          372 ALAQGCQELEYMAVYVSDITNESLESIGTYL-KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGL  450 (592)
T ss_dssp             HHHHHCTTCSEEEEEESCCCHHHHHHHHHHC-CSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGC
T ss_pred             HHHhhCccCeEEEeecCCccHHHHHHHHhhC-CCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCc
Confidence                 677888877           122 25 7788888873    23332211        000111111110      


Q ss_pred             --------CCCCCcccEEEEeeCCCCCc--eEEcCCccccccEeEEeecCCCCc--CCCCCCCCCCCCEEEEecCh
Q 047903          342 --------SDGFPNLKVLHLKSMLWLEE--WTMGIGAMPKLECLIINPCAYLKK--MPEQPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       342 --------~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~l~~c~~l~~--lp~~l~~l~~L~~L~l~~~~  405 (430)
                              ...+++|+.|+++++. +..  ++.....+++|++|++++|+ ++.  ++.....+++|++|++++|+
T Consensus       451 ~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          451 TDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             CHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             cHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence                    0124555555555432 222  11112346777777777776 332  33334456777777777776

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.61  E-value=1.3e-16  Score=150.55  Aligned_cols=232  Identities=17%  Similarity=0.118  Sum_probs=163.1

Q ss_pred             CCeeEEEEeecCCCccccccc--cCcceEEEEEecCCcccc--cccccccccCCceeecCCCCCc-ccChHhhhcCCCcc
Q 047903          118 KNVKRINVFEKQSDFAHLDDY--DSHMHSLVLDLGSLVLIH--YLSGIENLFLLRYLKLNIPSLK-SLPSPLLSNLLNLY  192 (430)
Q Consensus       118 ~~~r~L~l~~~~~~~~~~~~~--~~~L~~L~L~l~~~~l~~--lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~~~L~~L~  192 (430)
                      ..++.+.+. ++........+  +++|+  .|++++|.++.  +|..+..+++|++|++++|.++ ..|..+ +++++|+
T Consensus        70 ~~l~~L~l~-~n~l~~~~~~~~~~~~L~--~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l-~~~~~L~  145 (336)
T 2ast_B           70 QGVIAFRCP-RSFMDQPLAEHFSPFRVQ--HMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL-AKNSNLV  145 (336)
T ss_dssp             TTCSEEECT-TCEECSCCCSCCCCBCCC--EEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH-TTCTTCS
T ss_pred             ccceEEEcC-CccccccchhhccCCCCC--EEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHH-hcCCCCC
Confidence            678899988 66555444444  88999  99999999873  7788899999999999999988 557777 9999999


Q ss_pred             EEecCCC-Ccc--ccchhhccCcccceeecCCc-ccCCCcCccCCCCcccceeecCCCCcchhhhcCCCC-CCceEEEEc
Q 047903          193 TLDMPFS-YID--HTADEFWKMNNLRHLNFGSI-TLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLP-NLRNLRIWG  267 (430)
Q Consensus       193 ~L~L~~~-~l~--~lp~~i~~L~~L~~L~l~~~-~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~  267 (430)
                      +|++++| .++  .+|..+.++++|++|++++| .+...                    ..... ++.++ +|++|++++
T Consensus       146 ~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~--------------------~~~~~-~~~l~~~L~~L~l~~  204 (336)
T 2ast_B          146 RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK--------------------HVQVA-VAHVSETITQLNLSG  204 (336)
T ss_dssp             EEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH--------------------HHHHH-HHHSCTTCCEEECCS
T ss_pred             EEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH--------------------HHHHH-HHhcccCCCEEEeCC
Confidence            9999999 787  47877899999999999999 76540                    12333 67778 889999988


Q ss_pred             cc-cccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEE-EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCC
Q 047903          268 DL-SYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVL-VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGF  345 (430)
Q Consensus       268 ~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~  345 (430)
                      +. ......++..+..+++|+.|++++   +..+..-.. .+..+ ++|++|++++|....+.        . ......+
T Consensus       205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~---~~~l~~~~~~~l~~l-~~L~~L~l~~~~~~~~~--------~-~~~l~~~  271 (336)
T 2ast_B          205 YRKNLQKSDLSTLVRRCPNLVHLDLSD---SVMLKNDCFQEFFQL-NYLQHLSLSRCYDIIPE--------T-LLELGEI  271 (336)
T ss_dssp             CGGGSCHHHHHHHHHHCTTCSEEECTT---CTTCCGGGGGGGGGC-TTCCEEECTTCTTCCGG--------G-GGGGGGC
T ss_pred             CcccCCHHHHHHHHhhCCCCCEEeCCC---CCcCCHHHHHHHhCC-CCCCEeeCCCCCCCCHH--------H-HHHHhcC
Confidence            74 122356677777888999999986   332221100 44567 89999999999521111        0 0113458


Q ss_pred             CcccEEEEeeCCCCCceEEcCCcc-ccccEeEEeecCCCCcCCCCCC
Q 047903          346 PNLKVLHLKSMLWLEEWTMGIGAM-PKLECLIINPCAYLKKMPEQPW  391 (430)
Q Consensus       346 ~~L~~L~l~~~~~l~~~~~~~~~~-~~L~~L~l~~c~~l~~lp~~l~  391 (430)
                      ++|+.|+++++  +..-.  ...+ .+|+.|++++|.--...|..+.
T Consensus       272 ~~L~~L~l~~~--i~~~~--~~~l~~~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          272 PTLKTLQVFGI--VPDGT--LQLLKEALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             TTCCEEECTTS--SCTTC--HHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred             CCCCEEeccCc--cCHHH--HHHHHhhCcceEEecccCccccCCccc
Confidence            99999999986  22110  1123 3477788876543334454443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.60  E-value=2e-16  Score=151.01  Aligned_cols=84  Identities=17%  Similarity=0.174  Sum_probs=46.7

Q ss_pred             CcceEEEEEecCCcccccc-----ccccccc-CCceeecCCCCCcccC-hHhhhcC-----CCccEEecCCCCccccchh
Q 047903          140 SHMHSLVLDLGSLVLIHYL-----SGIENLF-LLRYLKLNIPSLKSLP-SPLLSNL-----LNLYTLDMPFSYIDHTADE  207 (430)
Q Consensus       140 ~~L~~L~L~l~~~~l~~lp-----~~~~~l~-~L~~L~L~~~~i~~lp-~~i~~~L-----~~L~~L~L~~~~l~~lp~~  207 (430)
                      ++|+  .|++++|.++..+     ..+..++ +|++|++++|.++... ..+ +.+     ++|++|++++|.++..+..
T Consensus        22 ~~L~--~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l-~~~l~~~~~~L~~L~Ls~n~l~~~~~~   98 (362)
T 3goz_A           22 HGVT--SLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDEL-VQILAAIPANVTSLNLSGNFLSYKSSD   98 (362)
T ss_dssp             TTCC--EEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHH-HHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred             CCce--EEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHH-HHHHhccCCCccEEECcCCcCChHHHH
Confidence            3366  6666666665443     3455555 6666666666666542 223 443     6666666666666543322


Q ss_pred             -----hccC-cccceeecCCcccCC
Q 047903          208 -----FWKM-NNLRHLNFGSITLPA  226 (430)
Q Consensus       208 -----i~~L-~~L~~L~l~~~~~~~  226 (430)
                           +..+ ++|++|++++|.+..
T Consensus        99 ~l~~~l~~~~~~L~~L~Ls~N~l~~  123 (362)
T 3goz_A           99 ELVKTLAAIPFTITVLDLGWNDFSS  123 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred             HHHHHHHhCCCCccEEECcCCcCCc
Confidence                 2333 566666666666654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.59  E-value=4.1e-17  Score=157.18  Aligned_cols=234  Identities=16%  Similarity=0.078  Sum_probs=144.2

Q ss_pred             ccccc--cCcceEEEEEecCCcccc-----cccccccccCCceeecCCCCCcc----cChHh------hhcCCCccEEec
Q 047903          134 HLDDY--DSHMHSLVLDLGSLVLIH-----YLSGIENLFLLRYLKLNIPSLKS----LPSPL------LSNLLNLYTLDM  196 (430)
Q Consensus       134 ~~~~~--~~~L~~L~L~l~~~~l~~-----lp~~~~~l~~L~~L~L~~~~i~~----lp~~i------~~~L~~L~~L~L  196 (430)
                      +...+  +++|+  .|++++|.++.     ++..+..+++|++|++++|.+..    +|..+      |.++++|++|+|
T Consensus        24 l~~~l~~~~~L~--~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L  101 (386)
T 2ca6_A           24 VFAVLLEDDSVK--EIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL  101 (386)
T ss_dssp             TSHHHHHCSCCC--EEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred             HHHHHhcCCCcc--EEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence            44444  67788  89999998773     34557788999999999876543    34433      268899999999


Q ss_pred             CCCCccc-----cchhhccCcccceeecCCcccCCC----cC---ccC---------CCCcccceeecCCCCcchh---h
Q 047903          197 PFSYIDH-----TADEFWKMNNLRHLNFGSITLPAH----PR---KYC---------RSLENLNFISALHPCCCTE---D  252 (430)
Q Consensus       197 ~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~~~~----lp---~~l---------~~L~~L~~~~~~~~~~~~~---~  252 (430)
                      ++|.+..     +|..+.++++|++|++++|.+...    ++   ..+         ++|+.|.+.++........   .
T Consensus       102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  181 (386)
T 2ca6_A          102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK  181 (386)
T ss_dssp             CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence            9998776     777888999999999999987642    11   112         5666666665554322222   1


Q ss_pred             hcCCCCCCceEEEEcccccc--HHHHHH-HhcCCCCCCEEEEecCCCCCCc-----eEEEEEcccccCCcceEEEEcccc
Q 047903          253 ILGRLPNLRNLRIWGDLSYY--QSLLSQ-SLCTLTCLESLKLVSESKMPTL-----SKIVLVEYQFPPRLTHLSFSNTEL  324 (430)
Q Consensus       253 ~l~~l~~L~~L~l~~~~~~~--~~~~~~-~l~~l~~L~~L~l~~~~~~~~L-----~~L~l~~~~lp~~L~~L~L~~~~l  324 (430)
                      .+..+++|++|++++|.-..  ...+.. .+..+++|+.|++++    ..+     ..+.-++..+ ++|++|+|++|.+
T Consensus       182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~----n~l~~~g~~~l~~~l~~~-~~L~~L~L~~n~i  256 (386)
T 2ca6_A          182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD----NTFTHLGSSALAIALKSW-PNLRELGLNDCLL  256 (386)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCS----SCCHHHHHHHHHHHGGGC-TTCCEEECTTCCC
T ss_pred             HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcC----CCCCcHHHHHHHHHHccC-CCcCEEECCCCCC
Confidence            25667788888888775111  111233 666777777777774    223     1111134566 7778888877776


Q ss_pred             CCcccccccCCCeEEEc--CCCCCcccEEEEeeCCCCCc-----eEEcC-CccccccEeEEeecC
Q 047903          325 MEDPKSRASSSRKLTCG--SDGFPNLKVLHLKSMLWLEE-----WTMGI-GAMPKLECLIINPCA  381 (430)
Q Consensus       325 ~~~~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~-----~~~~~-~~~~~L~~L~l~~c~  381 (430)
                      ......      .++..  ...+++|+.|+++++ .+..     ++... ..+++|++|++++|+
T Consensus       257 ~~~~~~------~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          257 SARGAA------AVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             CHHHHH------HHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             chhhHH------HHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence            432100      00000  123677777777763 3443     33222 346777777777765

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.58  E-value=1.7e-15  Score=141.39  Aligned_cols=223  Identities=16%  Similarity=0.068  Sum_probs=120.5

Q ss_pred             CeeEEEEeecCCCcc-----ccccc-cCcceEEEEEecCCccc-cccccc--ccccCCceeecCCCCCccc-C----hHh
Q 047903          119 NVKRINVFEKQSDFA-----HLDDY-DSHMHSLVLDLGSLVLI-HYLSGI--ENLFLLRYLKLNIPSLKSL-P----SPL  184 (430)
Q Consensus       119 ~~r~L~l~~~~~~~~-----~~~~~-~~~L~~L~L~l~~~~l~-~lp~~~--~~l~~L~~L~L~~~~i~~l-p----~~i  184 (430)
                      +++++.+. +.....     +.... .++|+  .|++++|.+. ..|..+  +.+++|++|++++|.++.. |    ..+
T Consensus        65 ~l~~l~l~-~~~~~~~~~~~~~~~~~~~~L~--~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~  141 (310)
T 4glp_A           65 RVRRLTVG-AAQVPAQLLVGALRVLAYSRLK--ELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ  141 (310)
T ss_dssp             CCCEEEEC-SCCCBHHHHHHHHHHHHHSCCC--EEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred             ceeEEEEe-CCcCCHHHHHHHHHhcccCcee--EEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence            46667766 444321     11122 55577  7777888776 455555  7778888888888877642 2    233


Q ss_pred             hhcCCCccEEecCCCCccccc-hhhccCcccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhh-hcCCCCCCce
Q 047903          185 LSNLLNLYTLDMPFSYIDHTA-DEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTED-ILGRLPNLRN  262 (430)
Q Consensus       185 ~~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~-~l~~l~~L~~  262 (430)
                       ..+++|++|++++|.+..+| ..++++++|++|++++|.+.+..                   ..... .++.+++|++
T Consensus       142 -~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------------------~~~~~~~~~~l~~L~~  201 (310)
T 4glp_A          142 -WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGER-------------------GLMAALCPHKFPAIQN  201 (310)
T ss_dssp             -TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHH-------------------HHHTTSCTTSSCCCCS
T ss_pred             -hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccch-------------------hhhHHHhhhcCCCCCE
Confidence             56778888888888777665 34777788888888777764300                   00001 0356677777


Q ss_pred             EEEEccccccHHHHHHH-hcCCCCCCEEEEecCCCCCCceEEEEEcccccCCcceEEEEccccCCc-ccccccCCCeEEE
Q 047903          263 LRIWGDLSYYQSLLSQS-LCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMED-PKSRASSSRKLTC  340 (430)
Q Consensus       263 L~l~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~-~~~~~~~~~~~~~  340 (430)
                      |++++|.-......+.. +..+++|+.|+++                            +|.+... |       .. ..
T Consensus       202 L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls----------------------------~N~l~~~~p-------~~-~~  245 (310)
T 4glp_A          202 LALRNTGMETPTGVCAALAAAGVQPHSLDLS----------------------------HNSLRATVN-------PS-AP  245 (310)
T ss_dssp             CBCCSSCCCCHHHHHHHHHHHTCCCSSEECT----------------------------TSCCCCCCC-------SC-CS
T ss_pred             EECCCCCCCchHHHHHHHHhcCCCCCEEECC----------------------------CCCCCccch-------hh-HH
Confidence            77777752111222222 2444444444444                            4433221 0       00 00


Q ss_pred             cCCCCCcccEEEEeeCCCCCceEEcCCccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903          341 GSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       341 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  405 (430)
                      ....+++|++|++++ +.++.++...  +++|+.|++++| .++.+|. +..+++|+.|++++++
T Consensus       246 ~~~~~~~L~~L~Ls~-N~l~~lp~~~--~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          246 RCMWSSALNSLNLSF-AGLEQVPKGL--PAKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGNP  305 (310)
T ss_dssp             SCCCCTTCCCEECCS-SCCCSCCSCC--CSCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSSTT
T ss_pred             hccCcCcCCEEECCC-CCCCchhhhh--cCCCCEEECCCC-cCCCCch-hhhCCCccEEECcCCC
Confidence            001124555555554 3344333222  356666666665 3555544 4566777777777665

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.58  E-value=1.7e-15  Score=153.37  Aligned_cols=168  Identities=20%  Similarity=0.213  Sum_probs=80.2

Q ss_pred             CeeEEEEeecCCCccccccc-cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecC
Q 047903          119 NVKRINVFEKQSDFAHLDDY-DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMP  197 (430)
Q Consensus       119 ~~r~L~l~~~~~~~~~~~~~-~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~  197 (430)
                      .++.|.+. ++.+..++.-. +++|+  .|+|++|.+..++. ++.+++|++|+|++|.++.+| .+ +.+++|+.|+|+
T Consensus        44 ~L~~L~l~-~n~i~~l~~l~~l~~L~--~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l-~~l~~L~~L~Ls  117 (605)
T 1m9s_A           44 SIDQIIAN-NSDIKSVQGIQYLPNVT--KLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SL-KDLKKLKSLSLE  117 (605)
T ss_dssp             TCCCCBCT-TCCCCCCTTGGGCTTCC--EEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TS-TTCTTCCEEECT
T ss_pred             CCCEEECc-CCCCCCChHHccCCCCC--EEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hh-ccCCCCCEEEec
Confidence            34444444 44333332211 45555  55555555554444 455555555555555555543 33 555555555555


Q ss_pred             CCCccccchhhccCcccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHH
Q 047903          198 FSYIDHTADEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLS  277 (430)
Q Consensus       198 ~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  277 (430)
                      +|.+..+|. +..+++|+.|+|++|.+.. ++                      . ++.+++|+.|++++|.  .....+
T Consensus       118 ~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~-l~----------------------~-l~~l~~L~~L~Ls~N~--l~~~~~  170 (605)
T 1m9s_A          118 HNGISDING-LVHLPQLESLYLGNNKITD-IT----------------------V-LSRLTKLDTLSLEDNQ--ISDIVP  170 (605)
T ss_dssp             TSCCCCCGG-GGGCTTCSEEECCSSCCCC-CG----------------------G-GGSCTTCSEEECCSSC--CCCCGG
T ss_pred             CCCCCCCcc-ccCCCccCEEECCCCccCC-ch----------------------h-hcccCCCCEEECcCCc--CCCchh
Confidence            555554432 4555555555555555544 33                      3 4555555555555553  111111


Q ss_pred             HHhcCCCCCCEEEEecCCCCCCceEEEEEcccccCCcceEEEEccccCCc
Q 047903          278 QSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMED  327 (430)
Q Consensus       278 ~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~  327 (430)
                        +..+++|+.|+|++    ..+..+. .+..+ ++|+.|+|++|.+...
T Consensus       171 --l~~l~~L~~L~Ls~----N~i~~l~-~l~~l-~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          171 --LAGLTKLQNLYLSK----NHISDLR-ALAGL-KNLDVLELFSQECLNK  212 (605)
T ss_dssp             --GTTCTTCCEEECCS----SCCCBCG-GGTTC-TTCSEEECCSEEEECC
T ss_pred             --hccCCCCCEEECcC----CCCCCCh-HHccC-CCCCEEEccCCcCcCC
Confidence              44555555555553    2222221 23444 5566666665555443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.56  E-value=1.3e-14  Score=129.15  Aligned_cols=143  Identities=16%  Similarity=0.187  Sum_probs=105.3

Q ss_pred             EEEEeecCCCccccccccCcceEEEEEecCCccccc-ccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCC
Q 047903          122 RINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHY-LSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSY  200 (430)
Q Consensus       122 ~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~  200 (430)
                      .+... +.....++..+.++|+  +|++++|.++.+ |..|..+++|++|++++|+++.+|...|+++++|++|+|++|.
T Consensus        23 ~v~c~-~~~l~~ip~~~~~~L~--~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~   99 (229)
T 3e6j_A           23 TVDCR-SKRHASVPAGIPTNAQ--ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ   99 (229)
T ss_dssp             EEECT-TSCCSSCCSCCCTTCS--EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EeEcc-CCCcCccCCCCCCCCC--EEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence            45554 5555667776778888  888888888866 4678888888888888888888877666888888888888888


Q ss_pred             ccccchh-hccCcccceeecCCcccCCCcC---ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903          201 IDHTADE-FWKMNNLRHLNFGSITLPAHPR---KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL  269 (430)
Q Consensus       201 l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp---~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  269 (430)
                      ++.+|.. +..+++|++|++++|.+.. +|   ..+++|+.|.+.++......... +..+++|+.|++.+|.
T Consensus       100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          100 LTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGA-FDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTT-TTTCTTCCEEECTTSC
T ss_pred             CCccChhHhCcchhhCeEeccCCcccc-cCcccccCCCCCEEECCCCcCCccCHHH-HhCCCCCCEEEeeCCC
Confidence            8888765 6788888888888888886 77   45566666655554433233334 6777777888777765

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.56  E-value=1.6e-14  Score=133.43  Aligned_cols=162  Identities=21%  Similarity=0.190  Sum_probs=134.9

Q ss_pred             CCCeeEEEEeecCCCccccccc-cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEe
Q 047903          117 RKNVKRINVFEKQSDFAHLDDY-DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLD  195 (430)
Q Consensus       117 ~~~~r~L~l~~~~~~~~~~~~~-~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~  195 (430)
                      ..+++.|.+. ++.+..++.-. +++|+  .|++++|.++.++. ++.+++|++|++++|.++.+|. + +++++|++|+
T Consensus        45 l~~L~~L~l~-~~~i~~~~~~~~l~~L~--~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l-~~l~~L~~L~  118 (291)
T 1h6t_A           45 LNSIDQIIAN-NSDIKSVQGIQYLPNVT--KLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-L-KDLKKLKSLS  118 (291)
T ss_dssp             HHTCCEEECT-TSCCCCCTTGGGCTTCC--EEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-G-TTCTTCCEEE
T ss_pred             cCcccEEEcc-CCCcccChhHhcCCCCC--EEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-h-ccCCCCCEEE
Confidence            4568899998 77766564422 89999  99999999998877 8999999999999999999865 6 9999999999


Q ss_pred             cCCCCccccchhhccCcccceeecCCcccCCCcC--ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccH
Q 047903          196 MPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPR--KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQ  273 (430)
Q Consensus       196 L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp--~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  273 (430)
                      +++|.+..++ .+..+++|++|++++|.+.. ++  ..+++|+.|.+.++..  ..... +..+++|+.|++++|.  ..
T Consensus       119 L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~N~l--~~~~~-l~~l~~L~~L~L~~N~--i~  191 (291)
T 1h6t_A          119 LEHNGISDIN-GLVHLPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQI--SDIVP-LAGLTKLQNLYLSKNH--IS  191 (291)
T ss_dssp             CTTSCCCCCG-GGGGCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCC--CCCGG-GTTCTTCCEEECCSSC--CC
T ss_pred             CCCCcCCCCh-hhcCCCCCCEEEccCCcCCc-chhhccCCCCCEEEccCCcc--ccchh-hcCCCccCEEECCCCc--CC
Confidence            9999999886 48999999999999999998 67  7888888888877664  23344 8899999999999996  22


Q ss_pred             HHHHHHhcCCCCCCEEEEec
Q 047903          274 SLLSQSLCTLTCLESLKLVS  293 (430)
Q Consensus       274 ~~~~~~l~~l~~L~~L~l~~  293 (430)
                       .+ ..+..+++|+.|++++
T Consensus       192 -~l-~~l~~l~~L~~L~l~~  209 (291)
T 1h6t_A          192 -DL-RALAGLKNLDVLELFS  209 (291)
T ss_dssp             -BC-GGGTTCTTCSEEEEEE
T ss_pred             -CC-hhhccCCCCCEEECcC
Confidence             22 2478899999999986

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.55  E-value=3e-15  Score=136.15  Aligned_cols=169  Identities=17%  Similarity=0.185  Sum_probs=120.6

Q ss_pred             cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceee
Q 047903          139 DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLN  218 (430)
Q Consensus       139 ~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~  218 (430)
                      +.++.  .++++++.++.++ .+..+++|++|++++|.++.+| .+ +.+++|++|++++|.++.+|. +.++++|++|+
T Consensus        18 l~~l~--~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l-~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~   91 (263)
T 1xeu_A           18 LANAV--KQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GM-QFFTNLKELHLSHNQISDLSP-LKDLTKLEELS   91 (263)
T ss_dssp             HHHHH--HHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TG-GGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEE
T ss_pred             HHHHH--HHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HH-hhCCCCCEEECCCCccCCChh-hccCCCCCEEE
Confidence            44444  5667777777666 5677888888888888888776 56 788888888888888887777 78888888888


Q ss_pred             cCCcccCCCcC--ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCC
Q 047903          219 FGSITLPAHPR--KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESK  296 (430)
Q Consensus       219 l~~~~~~~~lp--~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  296 (430)
                      +++|.+.+ +|  .. ++|+.|.+.++..  ..+.. ++.+++|+.|++++|.  ... + ..+..+++|+.|++++   
T Consensus        92 L~~N~l~~-l~~~~~-~~L~~L~L~~N~l--~~~~~-l~~l~~L~~L~Ls~N~--i~~-~-~~l~~l~~L~~L~L~~---  159 (263)
T 1xeu_A           92 VNRNRLKN-LNGIPS-ACLSRLFLDNNEL--RDTDS-LIHLKNLEILSIRNNK--LKS-I-VMLGFLSKLEVLDLHG---  159 (263)
T ss_dssp             CCSSCCSC-CTTCCC-SSCCEEECCSSCC--SBSGG-GTTCTTCCEEECTTSC--CCB-C-GGGGGCTTCCEEECTT---
T ss_pred             CCCCccCC-cCcccc-CcccEEEccCCcc--CCChh-hcCcccccEEECCCCc--CCC-C-hHHccCCCCCEEECCC---
Confidence            88888877 66  33 6677776666554  23456 8888899999988886  221 2 2577788888888875   


Q ss_pred             CCCceEEEEEcccccCCcceEEEEccccCCcc
Q 047903          297 MPTLSKIVLVEYQFPPRLTHLSFSNTELMEDP  328 (430)
Q Consensus       297 ~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~  328 (430)
                       ..++.+. .+..+ ++|+.|++++|.+...|
T Consensus       160 -N~i~~~~-~l~~l-~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          160 -NEITNTG-GLTRL-KKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             -SCCCBCT-TSTTC-CCCCEEEEEEEEEECCC
T ss_pred             -CcCcchH-HhccC-CCCCEEeCCCCcccCCc
Confidence             3333332 45677 88999999998875543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.55  E-value=1.9e-14  Score=127.14  Aligned_cols=143  Identities=11%  Similarity=0.084  Sum_probs=97.7

Q ss_pred             EEEEeecCCCccccccccCcceEEEEEecCCccccccc-ccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCC
Q 047903          122 RINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLS-GIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSY  200 (430)
Q Consensus       122 ~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~  200 (430)
                      .+... ++....+|..+.++++  .|++++|.++.++. .|..+++|++|++++|.++.+++..|.++++|++|+|++|.
T Consensus        15 ~v~c~-~~~l~~iP~~l~~~l~--~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           15 IVDCR-GKGLTEIPTNLPETIT--EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             EEECT-TSCCSSCCSSCCTTCC--EEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             EEEcC-CCCcCcCCCccCcCCC--EEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            34444 5555556666667788  88888888887664 77888888888888888887743333888888888888888


Q ss_pred             ccccchh-hccCcccceeecCCcccCCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903          201 IDHTADE-FWKMNNLRHLNFGSITLPAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL  269 (430)
Q Consensus       201 l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  269 (430)
                      ++.+|.. +.++++|++|++++|.+.. ++    ..+++|+.|.+.++......... +..+++|+.|++.+|.
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIAKGT-FSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTT-TTTCTTCCEEECCSSC
T ss_pred             CCccCHhHccCCCCCCEEECCCCCCCE-eCHHHcCCCCCCCEEECCCCcCCEECHHH-HhCCCCCCEEEeCCCC
Confidence            8888776 5778888888888888877 43    33444444444444333233333 6666677777776664

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.55  E-value=2.2e-14  Score=126.75  Aligned_cols=145  Identities=10%  Similarity=0.082  Sum_probs=111.7

Q ss_pred             eEEEEeecCCCccccccccCcceEEEEEecCCcccccc--cccccccCCceeecCCCCCcccChHhhhcCCCccEEecCC
Q 047903          121 KRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYL--SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPF  198 (430)
Q Consensus       121 r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp--~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~  198 (430)
                      +.+.+. ++....+|..+...++  +|++++|.++.++  ..|+.+++|++|++++|.++.+++..|+++++|++|+|++
T Consensus        14 ~~l~~s-~n~l~~iP~~~~~~~~--~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCS-NQKLNKIPEHIPQYTA--ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECC-SSCCSSCCSCCCTTCS--EEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeC-CCCcccCccCCCCCCC--EEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            366776 6666667777777788  8999999998774  3588999999999999999988775459999999999999


Q ss_pred             CCccccchh-hccCcccceeecCCcccCCCcC---ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903          199 SYIDHTADE-FWKMNNLRHLNFGSITLPAHPR---KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL  269 (430)
Q Consensus       199 ~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp---~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  269 (430)
                      |.++.+|.. +.++++|++|++++|.+....|   ..+++|+.|.+.++......+.. +..+++|+.|++.+|.
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA-FDTLHSLSTLNLLANP  164 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTT-TTTCTTCCEEECCSCC
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHH-hcCCCCCCEEEecCcC
Confidence            999988765 8899999999999999988223   44455555555444433344555 7778888888888775

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.55  E-value=4e-15  Score=129.20  Aligned_cols=82  Identities=17%  Similarity=0.200  Sum_probs=39.5

Q ss_pred             cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccc-cchhhccCccccee
Q 047903          139 DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDH-TADEFWKMNNLRHL  217 (430)
Q Consensus       139 ~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~-lp~~i~~L~~L~~L  217 (430)
                      +++|+  .|++++|.++.+| .+..+++|++|++++|.++.++ .+ +++++|++|++++|.++. .|..++++++|++|
T Consensus        43 l~~L~--~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           43 MNSLT--YITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PI-SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHTCC--EEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GG-TTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             cCCcc--EEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hh-hcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            34444  4455555554444 3445555555555555444432 33 455555555555554443 33344455555555


Q ss_pred             ecCCcccC
Q 047903          218 NFGSITLP  225 (430)
Q Consensus       218 ~l~~~~~~  225 (430)
                      ++++|.+.
T Consensus       118 ~Ls~n~i~  125 (197)
T 4ezg_A          118 DISHSAHD  125 (197)
T ss_dssp             ECCSSBCB
T ss_pred             EecCCccC
Confidence            55555444

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.54  E-value=5.6e-15  Score=150.32  Aligned_cols=281  Identities=16%  Similarity=0.130  Sum_probs=164.5

Q ss_pred             CCCeeEEEEeecC-CCcc--ccccc--cCcceEEEEEecCCcccc-----cccccccccCCceeecCCCC--Cc--ccCh
Q 047903          117 RKNVKRINVFEKQ-SDFA--HLDDY--DSHMHSLVLDLGSLVLIH-----YLSGIENLFLLRYLKLNIPS--LK--SLPS  182 (430)
Q Consensus       117 ~~~~r~L~l~~~~-~~~~--~~~~~--~~~L~~L~L~l~~~~l~~-----lp~~~~~l~~L~~L~L~~~~--i~--~lp~  182 (430)
                      .++++.|.+. ++ ....  ++.-.  +++|+  +|++++|.++.     ++.....+++|++|++++|.  +.  .++.
T Consensus       129 ~~~L~~L~L~-~~~~~~~~~l~~~~~~~~~L~--~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~  205 (594)
T 2p1m_B          129 FKNFKVLVLS-SCEGFSTDGLAAIAATCRNLK--ELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALER  205 (594)
T ss_dssp             CTTCCEEEEE-SCEEEEHHHHHHHHHHCTTCC--EEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHH
T ss_pred             CCCCcEEeCC-CcCCCCHHHHHHHHHhCCCCC--EEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHH
Confidence            3466777776 43 2221  11111  66677  77777777552     22223356678888887775  22  2222


Q ss_pred             HhhhcCCCccEEecCCC-CccccchhhccCcccceeecCCccc--------------------------CC----CcC--
Q 047903          183 PLLSNLLNLYTLDMPFS-YIDHTADEFWKMNNLRHLNFGSITL--------------------------PA----HPR--  229 (430)
Q Consensus       183 ~i~~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~l~~~~~--------------------------~~----~lp--  229 (430)
                      -+ .++++|++|++++| .+..+|..+.++++|++|+++++..                          ..    .+|  
T Consensus       206 l~-~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~  284 (594)
T 2p1m_B          206 LV-TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAV  284 (594)
T ss_dssp             HH-HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGG
T ss_pred             HH-HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHH
Confidence            23 56788888888887 6666777777777888877654421                          00    022  


Q ss_pred             -ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEec------------CC-
Q 047903          230 -KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVS------------ES-  295 (430)
Q Consensus       230 -~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~------------~~-  295 (430)
                       ..+++|+.|.+.++......+...+..+++|++|++.++-  ....+......+++|+.|++..            ++ 
T Consensus       285 ~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~--~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~  362 (594)
T 2p1m_B          285 YSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYI--EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ  362 (594)
T ss_dssp             HHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGG--HHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHH
T ss_pred             HHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCcc--CHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHH
Confidence             2456677776666553323333336788999999999873  3344444455688999999832            00 


Q ss_pred             -------CCCCceEEEE-----------Ec-ccccCCcceEEEE--c----cccCCccc--------ccccCCCeEEEcC
Q 047903          296 -------KMPTLSKIVL-----------VE-YQFPPRLTHLSFS--N----TELMEDPK--------SRASSSRKLTCGS  342 (430)
Q Consensus       296 -------~~~~L~~L~l-----------~~-~~lp~~L~~L~L~--~----~~l~~~~~--------~~~~~~~~~~~~~  342 (430)
                             .+++|+.|.+           .+ ..+ ++|+.|+++  +    +.+...|.        ........+....
T Consensus       363 ~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~-~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~  441 (594)
T 2p1m_B          363 GLVSVSMGCPKLESVLYFCRQMTNAALITIARNR-PNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG  441 (594)
T ss_dssp             HHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHC-TTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred             HHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhC-CCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC
Confidence                   0778888866           11 246 899999999  3    33332211        0001111111111


Q ss_pred             -----------CCCCcccEEEEeeCCCCCceEE--cCCccccccEeEEeecCCCCc-CCCCCCCCCCCCEEEEecCh
Q 047903          343 -----------DGFPNLKVLHLKSMLWLEEWTM--GIGAMPKLECLIINPCAYLKK-MPEQPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       343 -----------~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~l~~~~  405 (430)
                                 ..+++|+.|+++++. +.....  ....+++|++|++++|+.... ++.....+++|++|++++|+
T Consensus       442 ~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~  517 (594)
T 2p1m_B          442 LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS  517 (594)
T ss_dssp             SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred             cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence                       126677888887643 322111  113489999999999985221 22244568999999999998

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.54  E-value=1.1e-14  Score=128.69  Aligned_cols=120  Identities=18%  Similarity=0.210  Sum_probs=93.7

Q ss_pred             EEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCcccc-chhhccCcccceeecCCccc
Q 047903          146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHT-ADEFWKMNNLRHLNFGSITL  224 (430)
Q Consensus       146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~  224 (430)
                      .++++++.++.+|..+.  ++|+.|++++|.++.+|...|.++++|++|+|++|.+..+ |..+.++++|++|++++|.+
T Consensus        15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l   92 (220)
T 2v9t_B           15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI   92 (220)
T ss_dssp             EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred             EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence            78999999999998765  6899999999999999876559999999999999999987 66799999999999999999


Q ss_pred             CCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903          225 PAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL  269 (430)
Q Consensus       225 ~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  269 (430)
                      .. +|    ..+++|+.|.+.++......+.. +..+++|+.|++++|.
T Consensus        93 ~~-l~~~~f~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~  139 (220)
T 2v9t_B           93 TE-LPKSLFEGLFSLQLLLLNANKINCLRVDA-FQDLHNLNLLSLYDNK  139 (220)
T ss_dssp             CC-CCTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSC
T ss_pred             Cc-cCHhHccCCCCCCEEECCCCCCCEeCHHH-cCCCCCCCEEECCCCc
Confidence            98 76    23444555544444433333444 6666666666666664

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.54  E-value=2.7e-15  Score=139.99  Aligned_cols=147  Identities=10%  Similarity=-0.025  Sum_probs=98.4

Q ss_pred             CCeeEEEEeecCCCc-ccccc---c-cCcceEEEEEecCCcccc-cc----cccccccCCceeecCCCCCcccChHhhhc
Q 047903          118 KNVKRINVFEKQSDF-AHLDD---Y-DSHMHSLVLDLGSLVLIH-YL----SGIENLFLLRYLKLNIPSLKSLPSPLLSN  187 (430)
Q Consensus       118 ~~~r~L~l~~~~~~~-~~~~~---~-~~~L~~L~L~l~~~~l~~-lp----~~~~~l~~L~~L~L~~~~i~~lp~~i~~~  187 (430)
                      .++++|.+. ++... ..+..   . +++|+  +|++++|.++. .+    ..+..+++|++|++++|.+..+|...|++
T Consensus        91 ~~L~~L~l~-~n~l~~~~~~~~~~~~~~~L~--~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  167 (310)
T 4glp_A           91 SRLKELTLE-DLKITGTMPPLPLEATGLALS--SLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA  167 (310)
T ss_dssp             SCCCEEEEE-SCCCBSCCCCCSSSCCCBCCS--SCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC
T ss_pred             CceeEEEee-CCEeccchhhhhhhccCCCCC--EEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc
Confidence            348899998 66554 34443   2 66777  89999999874 22    34557899999999999999887555599


Q ss_pred             CCCccEEecCCCCccc---cchh--hccCcccceeecCCcccCCCcC-------ccCCCCcccceeecCCCCcchhhhcC
Q 047903          188 LLNLYTLDMPFSYIDH---TADE--FWKMNNLRHLNFGSITLPAHPR-------KYCRSLENLNFISALHPCCCTEDILG  255 (430)
Q Consensus       188 L~~L~~L~L~~~~l~~---lp~~--i~~L~~L~~L~l~~~~~~~~lp-------~~l~~L~~L~~~~~~~~~~~~~~~l~  255 (430)
                      +++|++|++++|++..   ++..  ++++++|++|++++|.+.. +|       +.+++|+.|.+.++......+.. ++
T Consensus       168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-~~  245 (310)
T 4glp_A          168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-AP  245 (310)
T ss_dssp             CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-CS
T ss_pred             CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhh-HH
Confidence            9999999999997653   4333  4789999999999998875 43       23355555554444432222333 33


Q ss_pred             CC---CCCceEEEEccc
Q 047903          256 RL---PNLRNLRIWGDL  269 (430)
Q Consensus       256 ~l---~~L~~L~l~~~~  269 (430)
                      .+   ++|++|++++|.
T Consensus       246 ~~~~~~~L~~L~Ls~N~  262 (310)
T 4glp_A          246 RCMWSSALNSLNLSFAG  262 (310)
T ss_dssp             SCCCCTTCCCEECCSSC
T ss_pred             hccCcCcCCEEECCCCC
Confidence            33   455555555553

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.53  E-value=2e-14  Score=146.14  Aligned_cols=280  Identities=12%  Similarity=0.042  Sum_probs=173.5

Q ss_pred             CCCeeEEEEeecCCCcc-ccccc---cCc-ceEEEEEecCCc-cc--ccccccccccCCceeecCCCCCcc-----cChH
Q 047903          117 RKNVKRINVFEKQSDFA-HLDDY---DSH-MHSLVLDLGSLV-LI--HYLSGIENLFLLRYLKLNIPSLKS-----LPSP  183 (430)
Q Consensus       117 ~~~~r~L~l~~~~~~~~-~~~~~---~~~-L~~L~L~l~~~~-l~--~lp~~~~~l~~L~~L~L~~~~i~~-----lp~~  183 (430)
                      .++++.|.+. .+.... ....+   +++ |+  +|++++|. ++  .++.....+++|++|++++|.++.     ++..
T Consensus       111 ~~~L~~L~L~-~~~i~~~~~~~l~~~~~~~L~--~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~  187 (592)
T 3ogk_B          111 LRQLKSVHFR-RMIVSDLDLDRLAKARADDLE--TLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL  187 (592)
T ss_dssp             CTTCCEEEEE-SCBCCHHHHHHHHHHHGGGCC--EEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHH
T ss_pred             CCCCCeEEee-ccEecHHHHHHHHHhccccCc--EEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHH
Confidence            4679999999 654432 22222   334 99  88998887 33  344445688999999999998764     3333


Q ss_pred             hhhcCCCccEEecCCCCcc-----ccchhhccCcccceeecCCcccCCCcC---ccCCCCcccceeecCCC---------
Q 047903          184 LLSNLLNLYTLDMPFSYID-----HTADEFWKMNNLRHLNFGSITLPAHPR---KYCRSLENLNFISALHP---------  246 (430)
Q Consensus       184 i~~~L~~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~~~~lp---~~l~~L~~L~~~~~~~~---------  246 (430)
                      . .++++|++|++++|.+.     .++..+.++++|++|++++|.+.+ +|   ..+++|+.|.+......         
T Consensus       188 ~-~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  265 (592)
T 3ogk_B          188 A-QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMN  265 (592)
T ss_dssp             H-HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSC
T ss_pred             H-hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHH
Confidence            4 88999999999999775     455557889999999999998887 76   66677777766432211         


Q ss_pred             -----------------CcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCC----------CCCC
Q 047903          247 -----------------CCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSES----------KMPT  299 (430)
Q Consensus       247 -----------------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~----------~~~~  299 (430)
                                       ...+.. +..+++|++|+++++. .....+...+..+++|+.|++.+.-          .+++
T Consensus       266 l~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~  343 (592)
T 3ogk_B          266 LVFPRKLCRLGLSYMGPNEMPIL-FPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ  343 (592)
T ss_dssp             CCCCTTCCEEEETTCCTTTGGGG-GGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTT
T ss_pred             hhccccccccCccccchhHHHHH-HhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCC
Confidence                             112222 5566778888888775 2233344556788888888886410          0677


Q ss_pred             ceEEEEE-----------c------------ccccCCcceEEEEccccCCcccc---c-ccCCCeEEEc-----------
Q 047903          300 LSKIVLV-----------E------------YQFPPRLTHLSFSNTELMEDPKS---R-ASSSRKLTCG-----------  341 (430)
Q Consensus       300 L~~L~l~-----------~------------~~lp~~L~~L~L~~~~l~~~~~~---~-~~~~~~~~~~-----------  341 (430)
                      |+.|++.           .            ..+ ++|++|++..+.+....+.   . ......+...           
T Consensus       344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~  422 (592)
T 3ogk_B          344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC-QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL  422 (592)
T ss_dssp             CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC-TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC
T ss_pred             CCEEEeecCccccccccccCccCHHHHHHHHhhC-ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCc
Confidence            8887764           1            124 7788888866665432210   0 0011111110           


Q ss_pred             ---------CCCCCcccEEEEeeCCC-CCceE--EcCCccccccEeEEeecCCCCc--CCCCCCCCCCCCEEEEecCh
Q 047903          342 ---------SDGFPNLKVLHLKSMLW-LEEWT--MGIGAMPKLECLIINPCAYLKK--MPEQPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       342 ---------~~~~~~L~~L~l~~~~~-l~~~~--~~~~~~~~L~~L~l~~c~~l~~--lp~~l~~l~~L~~L~l~~~~  405 (430)
                               ...+++|+.|++++|.+ +....  .....+++|++|++.+|. +..  ++..+.++++|++|++++|+
T Consensus       423 p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~  499 (592)
T 3ogk_B          423 PLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC  499 (592)
T ss_dssp             CCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred             hHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC
Confidence                     11245555555544332 11100  001136778888887765 332  34445678999999999997

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.52  E-value=5.7e-14  Score=122.99  Aligned_cols=166  Identities=20%  Similarity=0.265  Sum_probs=108.6

Q ss_pred             EEEEeecCCCccccccccCcceEEEEEecCCccccccc-ccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCC
Q 047903          122 RINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLS-GIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSY  200 (430)
Q Consensus       122 ~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~  200 (430)
                      .+... +.....++..+.++++  +|++++|.++.++. .++.+++|++|++++|+++.+|...|.++++|++|++++|.
T Consensus        11 ~v~c~-~~~l~~~p~~~~~~l~--~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           11 TVECY-SQGRTSVPTGIPAQTT--YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             EEECC-SSCCSSCCSCCCTTCS--EEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEec-CCCccCCCCCCCCCCc--EEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            34444 4445556666677788  88888888887764 56788888888888888888877666888888888888888


Q ss_pred             ccccchh-hccCcccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHH
Q 047903          201 IDHTADE-FWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQS  279 (430)
Q Consensus       201 l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  279 (430)
                      ++.+|.. ++++++|++|++++|.+.. +|                    ... ++.+++|+.|+++++.  .....+..
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~--------------------~~~-~~~l~~L~~L~l~~N~--l~~~~~~~  143 (208)
T 2o6s_A           88 LQSLPNGVFDKLTQLKELALNTNQLQS-LP--------------------DGV-FDKLTQLKDLRLYQNQ--LKSVPDGV  143 (208)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCC-CC--------------------TTT-TTTCTTCCEEECCSSC--CSCCCTTT
T ss_pred             CCccCHhHhcCccCCCEEEcCCCcCcc-cC--------------------HhH-hccCCcCCEEECCCCc--cceeCHHH
Confidence            8877765 6788888888888888776 43                    111 4445555555555553  22222223


Q ss_pred             hcCCCCCCEEEEecCCCCCCceEEEEEcccccCCcceEEEEccccC
Q 047903          280 LCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELM  325 (430)
Q Consensus       280 l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~  325 (430)
                      +..+++|+.|+++++   +       +...+ ++|+.|+++.|.+.
T Consensus       144 ~~~l~~L~~L~l~~N---~-------~~~~~-~~l~~L~~~~n~~~  178 (208)
T 2o6s_A          144 FDRLTSLQYIWLHDN---P-------WDCTC-PGIRYLSEWINKHS  178 (208)
T ss_dssp             TTTCTTCCEEECCSC---C-------BCCCT-TTTHHHHHHHHHCT
T ss_pred             hccCCCccEEEecCC---C-------eecCC-CCHHHHHHHHHhCC
Confidence            455556666666541   1       22344 66666666666553

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.52  E-value=9.9e-15  Score=127.84  Aligned_cols=178  Identities=21%  Similarity=0.198  Sum_probs=135.0

Q ss_pred             EEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchh-hccCcccceeecCCccc
Q 047903          146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADE-FWKMNNLRHLNFGSITL  224 (430)
Q Consensus       146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~  224 (430)
                      .++.+++.++.+|..+  .++|++|++++|+++.+|...|+++++|++|++++|.++.+|.. +.++++|++|++++|.+
T Consensus        11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l   88 (208)
T 2o6s_A           11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL   88 (208)
T ss_dssp             EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence            6788888888888765  45899999999999999877669999999999999999988875 68999999999999988


Q ss_pred             CCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEE
Q 047903          225 PAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIV  304 (430)
Q Consensus       225 ~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~  304 (430)
                      .. +|                    ... ++.+++|++|+++++.  .....+..+..+++|+.|++++    ..++.+.
T Consensus        89 ~~-~~--------------------~~~-~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~l~~----N~l~~~~  140 (208)
T 2o6s_A           89 QS-LP--------------------NGV-FDKLTQLKELALNTNQ--LQSLPDGVFDKLTQLKDLRLYQ----NQLKSVP  140 (208)
T ss_dssp             CC-CC--------------------TTT-TTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCS----SCCSCCC
T ss_pred             Cc-cC--------------------HhH-hcCccCCCEEEcCCCc--CcccCHhHhccCCcCCEEECCC----CccceeC
Confidence            76 32                    222 6778888888888885  3333334578899999999985    3344332


Q ss_pred             E-EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEcCCcccc
Q 047903          305 L-VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPK  371 (430)
Q Consensus       305 l-~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  371 (430)
                      - .+..+ ++|+.|++++|.+.                 ..+++|+.|.++....-..++...+.++.
T Consensus       141 ~~~~~~l-~~L~~L~l~~N~~~-----------------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          141 DGVFDRL-TSLQYIWLHDNPWD-----------------CTCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             TTTTTTC-TTCCEEECCSCCBC-----------------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             HHHhccC-CCccEEEecCCCee-----------------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence            1 35567 99999999999763                 35678888888764433456655555543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.51  E-value=1.9e-15  Score=144.19  Aligned_cols=83  Identities=18%  Similarity=0.195  Sum_probs=38.6

Q ss_pred             cceEEEEEecCCccccc-ccccccc-----cCCceeecCCCCCcccChH-h---hhcC-CCccEEecCCCCccccchh--
Q 047903          141 HMHSLVLDLGSLVLIHY-LSGIENL-----FLLRYLKLNIPSLKSLPSP-L---LSNL-LNLYTLDMPFSYIDHTADE--  207 (430)
Q Consensus       141 ~L~~L~L~l~~~~l~~l-p~~~~~l-----~~L~~L~L~~~~i~~lp~~-i---~~~L-~~L~~L~L~~~~l~~lp~~--  207 (430)
                      +|+  +|++++|.++.. +..++.+     ++|++|++++|.++..+.. +   |..+ ++|++|++++|.++..+..  
T Consensus        52 ~L~--~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l  129 (362)
T 3goz_A           52 SVT--SLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEF  129 (362)
T ss_dssp             TCC--EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             cee--EEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHH
Confidence            455  555555555532 2333333     5555555555555543322 1   1223 5555555555555544321  


Q ss_pred             ---hcc-CcccceeecCCcccC
Q 047903          208 ---FWK-MNNLRHLNFGSITLP  225 (430)
Q Consensus       208 ---i~~-L~~L~~L~l~~~~~~  225 (430)
                         +.. .++|++|++++|.+.
T Consensus       130 ~~~l~~~~~~L~~L~Ls~N~l~  151 (362)
T 3goz_A          130 KQAFSNLPASITSLNLRGNDLG  151 (362)
T ss_dssp             HHHHTTSCTTCCEEECTTSCGG
T ss_pred             HHHHHhCCCceeEEEccCCcCC
Confidence               122 135555555555554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.50  E-value=1e-13  Score=120.26  Aligned_cols=144  Identities=16%  Similarity=0.141  Sum_probs=114.8

Q ss_pred             CCCCeeEEEEeecCCCccccccc--cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcc-cChHhhhcCCCcc
Q 047903          116 SRKNVKRINVFEKQSDFAHLDDY--DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKS-LPSPLLSNLLNLY  192 (430)
Q Consensus       116 ~~~~~r~L~l~~~~~~~~~~~~~--~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~-lp~~i~~~L~~L~  192 (430)
                      ...+++.|.+. ++.+..++ .+  +++|+  +|++++|.++.++ .++.+++|++|++++|.++. .|..+ +++++|+
T Consensus        42 ~l~~L~~L~l~-~n~i~~l~-~l~~l~~L~--~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~  115 (197)
T 4ezg_A           42 QMNSLTYITLA-NINVTDLT-GIEYAHNIK--DLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNL-SGLTSLT  115 (197)
T ss_dssp             HHHTCCEEEEE-SSCCSCCT-TGGGCTTCS--EEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCC-TTCTTCC
T ss_pred             hcCCccEEecc-CCCccChH-HHhcCCCCC--EEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhh-cCCCCCC
Confidence            34578999999 77777666 45  89999  9999999877654 78899999999999999986 57777 9999999


Q ss_pred             EEecCCCCccc-cchhhccCcccceeecCCcc-cCCCcC--ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEcc
Q 047903          193 TLDMPFSYIDH-TADEFWKMNNLRHLNFGSIT-LPAHPR--KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGD  268 (430)
Q Consensus       193 ~L~L~~~~l~~-lp~~i~~L~~L~~L~l~~~~-~~~~lp--~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  268 (430)
                      +|++++|.++. .|..++++++|++|++++|. +.. +|  ..+++|+.|.+.++....  +.. +..+++|+.|++.++
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~~l~~l~~L~~L~l~~n~i~~--~~~-l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IMPLKTLPELKSLNIQFDGVHD--YRG-IEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CGGGGGCSSCCEEECTTBCCCC--CTT-GGGCSSCCEEEECBC
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cHhhcCCCCCCEEECCCCCCcC--hHH-hccCCCCCEEEeeCc
Confidence            99999998885 67779999999999999998 666 66  667777777666655422  224 677788888888777


Q ss_pred             c
Q 047903          269 L  269 (430)
Q Consensus       269 ~  269 (430)
                      .
T Consensus       192 ~  192 (197)
T 4ezg_A          192 T  192 (197)
T ss_dssp             -
T ss_pred             c
Confidence            4

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.50  E-value=2.2e-14  Score=143.75  Aligned_cols=132  Identities=20%  Similarity=0.188  Sum_probs=103.9

Q ss_pred             CeeEEEEeecCCCccccccccCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCC
Q 047903          119 NVKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPF  198 (430)
Q Consensus       119 ~~r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~  198 (430)
                      +++.|.+. ++.+..++..++++|+  .|++++|.++.+|   ..+++|++|++++|.++.+|. + .+  +|++|++++
T Consensus        60 ~L~~L~Ls-~n~L~~lp~~l~~~L~--~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l-~~--~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLN-RLNLSSLPDNLPPQIT--VLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-L-PA--SLKHLDVDN  129 (571)
T ss_dssp             TCSEEECC-SSCCSCCCSCCCTTCS--EEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-C-CT--TCCEEECCS
T ss_pred             CccEEEeC-CCCCCccCHhHcCCCC--EEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-h-hc--CCCEEECCC
Confidence            57888888 6666667777788888  8999999998888   457889999999999999887 6 65  899999999


Q ss_pred             CCccccchhhccCcccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903          199 SYIDHTADEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL  269 (430)
Q Consensus       199 ~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  269 (430)
                      |.++.+|.   .+++|++|++++|.+.+ +|..+++|+.|.+.++....  ++. +.  ++|+.|++++|.
T Consensus       130 N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N~L~~--lp~-l~--~~L~~L~Ls~N~  191 (571)
T 3cvr_A          130 NQLTMLPE---LPALLEYINADNNQLTM-LPELPTSLEVLSVRNNQLTF--LPE-LP--ESLEALDVSTNL  191 (571)
T ss_dssp             SCCSCCCC---CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSC--CCC-CC--TTCCEEECCSSC
T ss_pred             CcCCCCCC---cCccccEEeCCCCccCc-CCCcCCCcCEEECCCCCCCC--cch-hh--CCCCEEECcCCC
Confidence            99888887   68899999999999888 87666677777666655322  333 44  677777777774

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.49  E-value=3.2e-14  Score=125.72  Aligned_cols=120  Identities=18%  Similarity=0.220  Sum_probs=89.4

Q ss_pred             EEEecCCcccccccccccccCCceeecCCCCCccc-ChHhhhcCCCccEEecCCCCccccch-hhccCcccceeecCCcc
Q 047903          146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSL-PSPLLSNLLNLYTLDMPFSYIDHTAD-EFWKMNNLRHLNFGSIT  223 (430)
Q Consensus       146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~  223 (430)
                      .++++++.++.+|..+..  .+++|++++|.++.+ |..+|+++++|++|++++|.++.++. .+.++++|++|++++|.
T Consensus        15 ~l~~s~n~l~~iP~~~~~--~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   92 (220)
T 2v70_A           15 TVDCSNQKLNKIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR   92 (220)
T ss_dssp             EEECCSSCCSSCCSCCCT--TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EeEeCCCCcccCccCCCC--CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence            799999999999987643  568999999999988 44545999999999999999998876 59999999999999999


Q ss_pred             cCCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903          224 LPAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL  269 (430)
Q Consensus       224 ~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  269 (430)
                      +.. +|    ..+++|+.|.+.++......+.. +..+++|+.|++++|.
T Consensus        93 l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~  140 (220)
T 2v70_A           93 LEN-VQHKMFKGLESLKTLMLRSNRITCVGNDS-FIGLSSVRLLSLYDNQ  140 (220)
T ss_dssp             CCC-CCGGGGTTCSSCCEEECTTSCCCCBCTTS-STTCTTCSEEECTTSC
T ss_pred             cCc-cCHhHhcCCcCCCEEECCCCcCCeECHhH-cCCCccCCEEECCCCc
Confidence            988 55    23444444444433333333344 5555666666665553

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.49  E-value=1.8e-13  Score=137.15  Aligned_cols=78  Identities=21%  Similarity=0.204  Sum_probs=62.9

Q ss_pred             cceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceeecC
Q 047903          141 HMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFG  220 (430)
Q Consensus       141 ~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~  220 (430)
                      +++  .|++++|.++.+|..+.  ++|++|++++|.++.+|    +.+++|++|++++|.++.+|. +.+  +|++|+++
T Consensus        60 ~L~--~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFS--ELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCS--EEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC
T ss_pred             Ccc--EEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC
Confidence            667  88888888888887663  78889999998888888    347888899999888888887 655  88888888


Q ss_pred             CcccCCCcCc
Q 047903          221 SITLPAHPRK  230 (430)
Q Consensus       221 ~~~~~~~lp~  230 (430)
                      +|.+.+ +|.
T Consensus       129 ~N~l~~-lp~  137 (571)
T 3cvr_A          129 NNQLTM-LPE  137 (571)
T ss_dssp             SSCCSC-CCC
T ss_pred             CCcCCC-CCC
Confidence            888877 553

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.48  E-value=4.9e-14  Score=134.34  Aligned_cols=143  Identities=19%  Similarity=0.103  Sum_probs=85.6

Q ss_pred             EEEEeecCCCccccccccCcceEEEEEecCCccccccc-ccc-cccCCceeecCCCCCcccChHhhhcCCCccEEecCCC
Q 047903          122 RINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLS-GIE-NLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFS  199 (430)
Q Consensus       122 ~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~-~~~-~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~  199 (430)
                      .+.+. ++....+|..+.+.++  +|++++|.++.++. .+. ++++|++|++++|+++.+++..|.++++|++|+|++|
T Consensus        22 ~l~c~-~~~l~~iP~~~~~~l~--~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           22 ILSCS-KQQLPNVPQSLPSYTA--LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             EEECC-SSCCSSCCSSCCTTCS--EEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEEeC-CCCcCccCccCCCCCC--EEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            45555 5555556666666666  77777777776653 454 6777777777777777776544477777777777777


Q ss_pred             Cccccchh-hccCcccceeecCCcccCCCcC----ccCCCCcccceeecCCCCcchhhhc---CCCCCCceEEEEccc
Q 047903          200 YIDHTADE-FWKMNNLRHLNFGSITLPAHPR----KYCRSLENLNFISALHPCCCTEDIL---GRLPNLRNLRIWGDL  269 (430)
Q Consensus       200 ~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l---~~l~~L~~L~l~~~~  269 (430)
                      .++.+|.. +.++++|++|+|++|.+.. ++    ..+++|+.|.+.++......... +   ..+++|+.|++++|.
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~~~-~~~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNNHIVV-VDRNAFEDMAQLQKLYLSQNQISRFPVEL-IKDGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCSCCGGG-TC----CTTCCEEECCSSC
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCCcccE-ECHHHhCCcccCCEEECCCCcCCeeCHHH-hcCcccCCcCCEEECCCCC
Confidence            77766653 6777777777777777766 43    33344444433333321111111 2   445666666666654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.47  E-value=3.9e-14  Score=136.31  Aligned_cols=244  Identities=16%  Similarity=0.090  Sum_probs=168.7

Q ss_pred             CCCeeEEEEeecCCCcc-----ccccc--cCcceEEEEEecCCccc----cccccc-------ccccCCceeecCCCCCc
Q 047903          117 RKNVKRINVFEKQSDFA-----HLDDY--DSHMHSLVLDLGSLVLI----HYLSGI-------ENLFLLRYLKLNIPSLK  178 (430)
Q Consensus       117 ~~~~r~L~l~~~~~~~~-----~~~~~--~~~L~~L~L~l~~~~l~----~lp~~~-------~~l~~L~~L~L~~~~i~  178 (430)
                      .+.++.|.+. ++.+..     +...+  +++|+  +|++++|.+.    .+|..+       ..+++|++|++++|.++
T Consensus        31 ~~~L~~L~L~-~n~i~~~~~~~l~~~l~~~~~L~--~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  107 (386)
T 2ca6_A           31 DDSVKEIVLS-GNTIGTEAARWLSENIASKKDLE--IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  107 (386)
T ss_dssp             CSCCCEEECT-TSEECHHHHHHHHHTTTTCTTCC--EEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             CCCccEEECC-CCCCCHHHHHHHHHHHHhCCCcc--EEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence            3568899988 665442     22334  78888  9999997544    344444       78899999999999988


Q ss_pred             c-----cChHhhhcCCCccEEecCCCCccc-----cchhhccC---------cccceeecCCcccCC-CcC------ccC
Q 047903          179 S-----LPSPLLSNLLNLYTLDMPFSYIDH-----TADEFWKM---------NNLRHLNFGSITLPA-HPR------KYC  232 (430)
Q Consensus       179 ~-----lp~~i~~~L~~L~~L~L~~~~l~~-----lp~~i~~L---------~~L~~L~l~~~~~~~-~lp------~~l  232 (430)
                      .     +|..+ .++++|++|+|++|.+..     ++..+..+         ++|++|++++|.+.. .+|      ..+
T Consensus       108 ~~~~~~l~~~l-~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~  186 (386)
T 2ca6_A          108 PTAQEPLIDFL-SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH  186 (386)
T ss_dssp             TTTHHHHHHHH-HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred             HHHHHHHHHHH-HhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence            6     67777 999999999999998863     33445555         899999999999973 244      467


Q ss_pred             CCCcccceeecCCCCc----chh-hhcCCCCCCceEEEEccccccH----HHHHHHhcCCCCCCEEEEecCCCCCCceEE
Q 047903          233 RSLENLNFISALHPCC----CTE-DILGRLPNLRNLRIWGDLSYYQ----SLLSQSLCTLTCLESLKLVSESKMPTLSKI  303 (430)
Q Consensus       233 ~~L~~L~~~~~~~~~~----~~~-~~l~~l~~L~~L~l~~~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L  303 (430)
                      ++|+.|.+.++.....    ... . +..+++|+.|++++|.  ..    ..++..+..+++|+.|++++    ..+...
T Consensus       187 ~~L~~L~L~~n~l~~~g~~~l~~~~-l~~~~~L~~L~Ls~n~--l~~~g~~~l~~~l~~~~~L~~L~L~~----n~i~~~  259 (386)
T 2ca6_A          187 RLLHTVKMVQNGIRPEGIEHLLLEG-LAYCQELKVLDLQDNT--FTHLGSSALAIALKSWPNLRELGLND----CLLSAR  259 (386)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTT-GGGCTTCCEEECCSSC--CHHHHHHHHHHHGGGCTTCCEEECTT----CCCCHH
T ss_pred             CCcCEEECcCCCCCHhHHHHHHHHH-hhcCCCccEEECcCCC--CCcHHHHHHHHHHccCCCcCEEECCC----CCCchh
Confidence            7888887777654321    233 5 7889999999999997  43    66788899999999999986    223322


Q ss_pred             EE-----Ec--ccccCCcceEEEEccccCCcccccccCCCeEEEcC-CCCCcccEEEEeeCCCCCceEE----cCCcccc
Q 047903          304 VL-----VE--YQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGS-DGFPNLKVLHLKSMLWLEEWTM----GIGAMPK  371 (430)
Q Consensus       304 ~l-----~~--~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~----~~~~~~~  371 (430)
                      ..     ++  ..+ ++|++|+|++|.+.....      ..++... ..+++|+.|+++++ .+.....    ....+++
T Consensus       260 ~~~~l~~~l~~~~~-~~L~~L~L~~n~i~~~g~------~~l~~~l~~~l~~L~~L~l~~N-~l~~~~~~~~~l~~~l~~  331 (386)
T 2ca6_A          260 GAAAVVDAFSKLEN-IGLQTLRLQYNEIELDAV------RTLKTVIDEKMPDLLFLELNGN-RFSEEDDVVDEIREVFST  331 (386)
T ss_dssp             HHHHHHHHHHTCSS-CCCCEEECCSSCCBHHHH------HHHHHHHHHHCTTCCEEECTTS-BSCTTSHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhhccC-CCeEEEECcCCcCCHHHH------HHHHHHHHhcCCCceEEEccCC-cCCcchhHHHHHHHHhhh
Confidence            10     22  236 899999999998754110      0011111 34799999999984 3433221    1124677


Q ss_pred             ccEeEEee
Q 047903          372 LECLIINP  379 (430)
Q Consensus       372 L~~L~l~~  379 (430)
                      ++.+++..
T Consensus       332 ~~~~~l~~  339 (386)
T 2ca6_A          332 RGRGELDE  339 (386)
T ss_dssp             HTCCEECC
T ss_pred             cCcchhhh
Confidence            77666544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.47  E-value=1.1e-13  Score=140.14  Aligned_cols=145  Identities=16%  Similarity=0.098  Sum_probs=120.2

Q ss_pred             CCCCCeeEEEEeecCCCccccccc-cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccE
Q 047903          115 KSRKNVKRINVFEKQSDFAHLDDY-DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYT  193 (430)
Q Consensus       115 ~~~~~~r~L~l~~~~~~~~~~~~~-~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~  193 (430)
                      ....+++.|.+. ++.+..++.-. +++|+  .|+|++|.+..+| .++.+++|++|+|++|.+..+| .+ ..+++|+.
T Consensus        62 ~~l~~L~~L~Ls-~N~l~~~~~l~~l~~L~--~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l-~~l~~L~~  135 (605)
T 1m9s_A           62 QYLPNVTKLFLN-GNKLTDIKPLTNLKNLG--WLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDIN-GL-VHLPQLES  135 (605)
T ss_dssp             GGCTTCCEEECT-TSCCCCCGGGGGCTTCC--EEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCG-GG-GGCTTCSE
T ss_pred             ccCCCCCEEEee-CCCCCCChhhccCCCCC--EEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCc-cc-cCCCccCE
Confidence            356789999999 77776666522 88999  9999999999876 6899999999999999999885 47 99999999


Q ss_pred             EecCCCCccccchhhccCcccceeecCCcccCCCcC-ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903          194 LDMPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPR-KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL  269 (430)
Q Consensus       194 L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp-~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  269 (430)
                      |+|++|.+..++ .+..+++|++|+|++|.+.+..| ..+++|+.|.+..+...  .+.. +..+++|+.|++++|.
T Consensus       136 L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~--~l~~-l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          136 LYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS--DLRA-LAGLKNLDVLELFSQE  208 (605)
T ss_dssp             EECCSSCCCCCG-GGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC--BCGG-GTTCTTCSEEECCSEE
T ss_pred             EECCCCccCCch-hhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCC--CChH-HccCCCCCEEEccCCc
Confidence            999999999884 59999999999999999998334 77777777777666542  2356 7888888888888775

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.47  E-value=8.7e-14  Score=126.43  Aligned_cols=140  Identities=18%  Similarity=0.153  Sum_probs=76.4

Q ss_pred             cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceee
Q 047903          139 DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLN  218 (430)
Q Consensus       139 ~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~  218 (430)
                      +++|+  +|++++|.++.++ .++.+++|++|++++|.++.+|. + +++++|++|++++|.++.+|.. .. ++|++|+
T Consensus        40 l~~L~--~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l-~~l~~L~~L~L~~N~l~~l~~~-~~-~~L~~L~  112 (263)
T 1xeu_A           40 LSGVQ--NFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-L-KDLTKLEELSVNRNRLKNLNGI-PS-ACLSRLF  112 (263)
T ss_dssp             HTTCS--EEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-G-TTCSSCCEEECCSSCCSCCTTC-CC-SSCCEEE
T ss_pred             cCcCc--EEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-h-ccCCCCCEEECCCCccCCcCcc-cc-CcccEEE
Confidence            45555  5555555555554 45555566666666665555554 4 5566666666666655555542 22 5566666


Q ss_pred             cCCcccCCCcC--ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEec
Q 047903          219 FGSITLPAHPR--KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVS  293 (430)
Q Consensus       219 l~~~~~~~~lp--~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~  293 (430)
                      +++|.+.+ +|  ..+++|+.|.+.++...  .+.. ++.+++|+.|++++|.  ....  ..+..+++|+.|++++
T Consensus       113 L~~N~l~~-~~~l~~l~~L~~L~Ls~N~i~--~~~~-l~~l~~L~~L~L~~N~--i~~~--~~l~~l~~L~~L~l~~  181 (263)
T 1xeu_A          113 LDNNELRD-TDSLIHLKNLEILSIRNNKLK--SIVM-LGFLSKLEVLDLHGNE--ITNT--GGLTRLKKVNWIDLTG  181 (263)
T ss_dssp             CCSSCCSB-SGGGTTCTTCCEEECTTSCCC--BCGG-GGGCTTCCEEECTTSC--CCBC--TTSTTCCCCCEEEEEE
T ss_pred             ccCCccCC-ChhhcCcccccEEECCCCcCC--CChH-HccCCCCCEEECCCCc--Ccch--HHhccCCCCCEEeCCC
Confidence            66665555 44  44555555544444321  1234 5666666777766665  1111  4455666666666664

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.46  E-value=1.1e-14  Score=146.32  Aligned_cols=95  Identities=21%  Similarity=0.249  Sum_probs=80.4

Q ss_pred             chhhhHHHHhhcCChhhhHHHHh-----------hhcccCCCceechhHHHHHHHhc--CCCCC-----ChHHHHHHHHH
Q 047903            2 EKPLGLWYFKYCRLPFCLKLCFL-----------YLSVFPAHLEISTRQLYQLWIAE--GFIPD-----NSEATAEKDLE   63 (430)
Q Consensus         2 ~~i~~~l~~sY~~L~~~~k~cfl-----------~~~~fp~~~~i~~~~Li~~w~~~--g~i~~-----~~~~~~~~~~~   63 (430)
                      ++|++++++||++||+++|.||+           |||+||+++.|+    +++|+|+  ||+.+     ..+++++ |++
T Consensus       361 ~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~  435 (549)
T 2a5y_B          361 VGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLK  435 (549)
T ss_dssp             STTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHH
T ss_pred             HHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHH
Confidence            46788999999999999999999           999999999999    8999999  99975     5788888 999


Q ss_pred             HHHHCCceeeeecCCCCcEeEEEEChhHHHHHHHHhhhcCc
Q 047903           64 LLINRGFVDTRKRGAGGTINTCSVHGRCRPVLLSVAFEAKF  104 (430)
Q Consensus        64 ~L~~~~ll~~~~~~~~~~~~~~~mhd~~~~l~~~~~~~~~~  104 (430)
                      +|+++||++....+   ....|+|||++|++|+.++.++++
T Consensus       436 ~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~  473 (549)
T 2a5y_B          436 RLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI  473 (549)
T ss_dssp             HTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred             HHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence            99999999987743   335899999999999988876543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.46  E-value=2.5e-14  Score=136.30  Aligned_cols=168  Identities=20%  Similarity=0.190  Sum_probs=127.5

Q ss_pred             EEEecCCcccccccccccccCCceeecCCCCCcccChHhhh-cCCCccEEecCCCCccccch-hhccCcccceeecCCcc
Q 047903          146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLS-NLLNLYTLDMPFSYIDHTAD-EFWKMNNLRHLNFGSIT  223 (430)
Q Consensus       146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~-~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~  223 (430)
                      +++++++.++.+|..+.  ..+++|+|++|.++.++...|. ++++|++|+|++|.+..++. .+.++++|++|+|++|.
T Consensus        22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   99 (361)
T 2xot_A           22 ILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH   99 (361)
T ss_dssp             EEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence            88999999999998765  3589999999999999887767 99999999999999999875 49999999999999999


Q ss_pred             cCCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHH-Hh---cCCCCCCEEEEecCC
Q 047903          224 LPAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQ-SL---CTLTCLESLKLVSES  295 (430)
Q Consensus       224 ~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l---~~l~~L~~L~l~~~~  295 (430)
                      +.. +|    ..+++|+.|.+.++......+.. +..+++|+.|++++|.  .. .++. .+   ..+++|+.|+|++  
T Consensus       100 l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~-~~~l~~L~~L~L~~N~--l~-~l~~~~~~~~~~l~~L~~L~L~~--  172 (361)
T 2xot_A          100 LHT-LDEFLFSDLQALEVLLLYNNHIVVVDRNA-FEDMAQLQKLYLSQNQ--IS-RFPVELIKDGNKLPKLMLLDLSS--  172 (361)
T ss_dssp             CCE-ECTTTTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSC--CC-SCCGGGTC----CTTCCEEECCS--
T ss_pred             CCc-CCHHHhCCCcCCCEEECCCCcccEECHHH-hCCcccCCEEECCCCc--CC-eeCHHHhcCcccCCcCCEEECCC--
Confidence            988 76    45566666666555544444556 8899999999999986  22 2222 23   5688999999984  


Q ss_pred             CCCCceEEEE-EcccccCC--cceEEEEccccC
Q 047903          296 KMPTLSKIVL-VEYQFPPR--LTHLSFSNTELM  325 (430)
Q Consensus       296 ~~~~L~~L~l-~~~~lp~~--L~~L~L~~~~l~  325 (430)
                        ..++.+.. .+..+ +.  ++.|+|++|.+.
T Consensus       173 --N~l~~l~~~~~~~l-~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          173 --NKLKKLPLTDLQKL-PAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             --SCCCCCCHHHHHHS-CHHHHTTEECCSSCEE
T ss_pred             --CCCCccCHHHhhhc-cHhhcceEEecCCCcc
Confidence              44554432 23445 44  478888888754

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.46  E-value=2.4e-13  Score=120.83  Aligned_cols=124  Identities=19%  Similarity=0.165  Sum_probs=105.0

Q ss_pred             CCCCeeEEEEeecCCCcccc-ccc--cCcceEEEEEecCCccccccc-ccccccCCceeecCCCCCcccChHhhhcCCCc
Q 047903          116 SRKNVKRINVFEKQSDFAHL-DDY--DSHMHSLVLDLGSLVLIHYLS-GIENLFLLRYLKLNIPSLKSLPSPLLSNLLNL  191 (430)
Q Consensus       116 ~~~~~r~L~l~~~~~~~~~~-~~~--~~~L~~L~L~l~~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L  191 (430)
                      .+.+++.|.+. ++.+..+. ..+  +++|+  +|++++|.++.+|. .|..+++|++|++++|+++.+|...|+.+++|
T Consensus        38 ~~~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~--~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L  114 (229)
T 3e6j_A           38 IPTNAQILYLH-DNQITKLEPGVFDSLINLK--ELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHL  114 (229)
T ss_dssp             CCTTCSEEECC-SSCCCCCCTTTTTTCTTCC--EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCCCCEEEcC-CCccCccCHHHhhCccCCc--EEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhh
Confidence            45789999999 77776654 444  88899  99999999998884 57899999999999999999988777999999


Q ss_pred             cEEecCCCCccccchhhccCcccceeecCCcccCCCcC-cc---CCCCcccceeec
Q 047903          192 YTLDMPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPR-KY---CRSLENLNFISA  243 (430)
Q Consensus       192 ~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp-~~---l~~L~~L~~~~~  243 (430)
                      ++|++++|.++.+|..+..+++|++|++++|.+.. +| ..   +++|+.|.+.++
T Consensus       115 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N  169 (229)
T 3e6j_A          115 KELFMCCNKLTELPRGIERLTHLTHLALDQNQLKS-IPHGAFDRLSSLTHAYLFGN  169 (229)
T ss_dssp             CEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECTTS
T ss_pred             CeEeccCCcccccCcccccCCCCCEEECCCCcCCc-cCHHHHhCCCCCCEEEeeCC
Confidence            99999999999999999999999999999999998 77 44   445555544433

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.44  E-value=1.7e-14  Score=146.67  Aligned_cols=273  Identities=15%  Similarity=0.069  Sum_probs=160.2

Q ss_pred             CCCeeEEEEeecCCCcc-ccccc---cCcceEEEEEecCC-cccc--cccccccccCCceeecCCCCCccc-----ChHh
Q 047903          117 RKNVKRINVFEKQSDFA-HLDDY---DSHMHSLVLDLGSL-VLIH--YLSGIENLFLLRYLKLNIPSLKSL-----PSPL  184 (430)
Q Consensus       117 ~~~~r~L~l~~~~~~~~-~~~~~---~~~L~~L~L~l~~~-~l~~--lp~~~~~l~~L~~L~L~~~~i~~l-----p~~i  184 (430)
                      .+++++|.+. .+.... ....+   +++|+  .|++++| .++.  ++..+.++++|++|++++|.++..     +...
T Consensus       104 ~~~L~~L~L~-~~~~~~~~~~~l~~~~~~L~--~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~  180 (594)
T 2p1m_B          104 YTWLEEIRLK-RMVVTDDCLELIAKSFKNFK--VLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP  180 (594)
T ss_dssp             CTTCCEEEEE-SCBCCHHHHHHHHHHCTTCC--EEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred             CCCCCeEEee-CcEEcHHHHHHHHHhCCCCc--EEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence            4568888888 544331 22222   67888  8888888 4553  555556788999999998886642     2222


Q ss_pred             hhcCCCccEEecCCCC--cc--ccchhhccCcccceeecCCcc-cCCCcC---ccCCCCcccceeecCC-----------
Q 047903          185 LSNLLNLYTLDMPFSY--ID--HTADEFWKMNNLRHLNFGSIT-LPAHPR---KYCRSLENLNFISALH-----------  245 (430)
Q Consensus       185 ~~~L~~L~~L~L~~~~--l~--~lp~~i~~L~~L~~L~l~~~~-~~~~lp---~~l~~L~~L~~~~~~~-----------  245 (430)
                       ..+++|++|++++|.  +.  .++.-+.++++|++|++++|. +.+ +|   ..+++|+.|....+..           
T Consensus       181 -~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~  258 (594)
T 2p1m_B          181 -DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLS  258 (594)
T ss_dssp             -TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHH
T ss_pred             -hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHHHH
Confidence             467789999998885  22  233334567899999998883 322 44   5566666665322210           


Q ss_pred             ------------------CCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCC----------CC
Q 047903          246 ------------------PCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSES----------KM  297 (430)
Q Consensus       246 ------------------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~----------~~  297 (430)
                                        ....+...+..+++|++|+++++. .....+...+..+++|+.|++.++-          .+
T Consensus       259 ~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~  337 (594)
T 2p1m_B          259 VALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTC  337 (594)
T ss_dssp             HHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHC
T ss_pred             HHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhC
Confidence                              011122212356888999998886 2333445557788999999998621          06


Q ss_pred             CCceEEEEE------------c---------ccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEe--
Q 047903          298 PTLSKIVLV------------E---------YQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLK--  354 (430)
Q Consensus       298 ~~L~~L~l~------------~---------~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--  354 (430)
                      ++|+.|+++            +         ..+ ++|+.|.+..+.+......         .-...+++|+.|++.  
T Consensus       338 ~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~-~~L~~L~~~~~~l~~~~~~---------~l~~~~~~L~~L~L~~~  407 (594)
T 2p1m_B          338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGC-PKLESVLYFCRQMTNAALI---------TIARNRPNMTRFRLCII  407 (594)
T ss_dssp             TTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHC-TTCCEEEEEESCCCHHHHH---------HHHHHCTTCCEEEEEES
T ss_pred             CCCCEEEEecCcccccccCCCCCHHHHHHHHHhc-hhHHHHHHhcCCcCHHHHH---------HHHhhCCCcceeEeecc
Confidence            778888651            0         125 7888887766665432210         000134566666665  


Q ss_pred             ---eCCCCCceE-------------------Ec----------CC-ccccccEeEEeecCCCCcCCCCC-CCCCCCCEEE
Q 047903          355 ---SMLWLEEWT-------------------MG----------IG-AMPKLECLIINPCAYLKKMPEQP-WCIKSLNKFN  400 (430)
Q Consensus       355 ---~~~~l~~~~-------------------~~----------~~-~~~~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~  400 (430)
                         +|+++...+                   ..          .+ .+++|+.|++++|......+..+ ..+++|++|+
T Consensus       408 ~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~  487 (594)
T 2p1m_B          408 EPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLE  487 (594)
T ss_dssp             STTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEE
T ss_pred             cCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEE
Confidence               233333111                   00          01 26677777777765211111112 4578999999


Q ss_pred             EecCh
Q 047903          401 CWWPQ  405 (430)
Q Consensus       401 l~~~~  405 (430)
                      +++|+
T Consensus       488 L~~n~  492 (594)
T 2p1m_B          488 IRDCP  492 (594)
T ss_dssp             EESCS
T ss_pred             CcCCC
Confidence            99988

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.44  E-value=9.9e-14  Score=114.57  Aligned_cols=127  Identities=21%  Similarity=0.156  Sum_probs=86.9

Q ss_pred             cCcceEEEEEecCCccc--ccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccc-cchhhccCcccc
Q 047903          139 DSHMHSLVLDLGSLVLI--HYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDH-TADEFWKMNNLR  215 (430)
Q Consensus       139 ~~~L~~L~L~l~~~~l~--~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~-lp~~i~~L~~L~  215 (430)
                      .++++  .|++++|.++  .+|..++.+++|++|++++|.++.+ ..+ +++++|++|++++|.+.. +|..++++++|+
T Consensus        16 ~~~l~--~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~   91 (149)
T 2je0_A           16 PSDVK--ELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANL-PKLNKLKKLELSDNRVSGGLEVLAEKCPNLT   91 (149)
T ss_dssp             GGGCS--EEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTC-CCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred             CccCe--EEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhh-hcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence            45666  7788888877  7777777888888888888887777 445 788888888888887776 676677788888


Q ss_pred             eeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHH---HHHhcCCCCCCEEEEe
Q 047903          216 HLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLL---SQSLCTLTCLESLKLV  292 (430)
Q Consensus       216 ~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~---~~~l~~l~~L~~L~l~  292 (430)
                      +|++++|.+.+ +|                   .+.. ++.+++|++|++++|.  .....   ...+..+++|+.|+++
T Consensus        92 ~L~ls~N~i~~-~~-------------------~~~~-~~~l~~L~~L~l~~N~--l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           92 HLNLSGNKIKD-LS-------------------TIEP-LKKLENLKSLDLFNCE--VTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EEECTTSCCCS-HH-------------------HHGG-GGGCTTCCEEECTTCG--GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             EEECCCCcCCC-hH-------------------HHHH-HhhCCCCCEEeCcCCc--ccchHHHHHHHHHHCCCcccccCC
Confidence            88888887765 21                   1233 6666777777777664  22211   1345566666666553

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.42  E-value=1.9e-13  Score=115.38  Aligned_cols=104  Identities=17%  Similarity=0.139  Sum_probs=52.3

Q ss_pred             CCeeEEEEeecCCCc--cccccc--cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcc-cChHhhhcCCCcc
Q 047903          118 KNVKRINVFEKQSDF--AHLDDY--DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKS-LPSPLLSNLLNLY  192 (430)
Q Consensus       118 ~~~r~L~l~~~~~~~--~~~~~~--~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~-lp~~i~~~L~~L~  192 (430)
                      .++++|.+. ++.+.  .++..+  +++|+  +|++++|.++.+ ..++.+++|++|++++|.++. +|..+ +++++|+
T Consensus        24 ~~L~~L~l~-~n~l~~~~i~~~~~~l~~L~--~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~   98 (168)
T 2ell_A           24 AAVRELVLD-NCKSNDGKIEGLTAEFVNLE--FLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLA-EKLPNLT   98 (168)
T ss_dssp             TSCSEEECC-SCBCBTTBCSSCCGGGGGCC--EEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHH-HHCTTCC
T ss_pred             ccCCEEECC-CCCCChhhHHHHHHhCCCCC--EEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHH-hhCCCCC
Confidence            445555555 43333  344333  45555  555555555544 445555555555555555554 33333 4555555


Q ss_pred             EEecCCCCccccc--hhhccCcccceeecCCcccCC
Q 047903          193 TLDMPFSYIDHTA--DEFWKMNNLRHLNFGSITLPA  226 (430)
Q Consensus       193 ~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~  226 (430)
                      +|++++|.++.+|  ..+..+++|++|++++|.+..
T Consensus        99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~  134 (168)
T 2ell_A           99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN  134 (168)
T ss_dssp             EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT
T ss_pred             EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc
Confidence            5555555555544  345555555555555555544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.42  E-value=4.5e-13  Score=115.76  Aligned_cols=123  Identities=15%  Similarity=0.155  Sum_probs=90.1

Q ss_pred             EEEEeecCCCccccccccCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCc
Q 047903          122 RINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYI  201 (430)
Q Consensus       122 ~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l  201 (430)
                      .+.+. ++....++..+.++++  .|++++|.++.+|..|.++++|++|++++|.++.++...|.++++|++|+|++|.+
T Consensus        14 ~l~~~-~~~l~~ip~~~~~~l~--~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           14 VVRCS-NKGLKVLPKGIPRDVT--ELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             EEECT-TSCCSSCCSCCCTTCC--EEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEcC-CCCCCcCCCCCCCCCC--EEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            45555 5556667766677788  88888888888887888888888888888888887665558888888888888888


Q ss_pred             cccch-hhccCcccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903          202 DHTAD-EFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL  269 (430)
Q Consensus       202 ~~lp~-~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  269 (430)
                      +.+|. .+.++++|++|++++|.+.. +|                    ... +..+++|+.|++.+|.
T Consensus        91 ~~i~~~~f~~l~~L~~L~L~~N~l~~-~~--------------------~~~-~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           91 RCIPPRTFDGLKSLRLLSLHGNDISV-VP--------------------EGA-FNDLSALSHLAIGANP  137 (193)
T ss_dssp             CBCCTTTTTTCTTCCEEECCSSCCCB-CC--------------------TTT-TTTCTTCCEEECCSSC
T ss_pred             CEeCHHHhCCCCCCCEEECCCCCCCe-eC--------------------hhh-hhcCccccEEEeCCCC
Confidence            87765 47788888888888888776 44                    112 5556666667666664

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.42  E-value=8.6e-13  Score=111.24  Aligned_cols=125  Identities=22%  Similarity=0.141  Sum_probs=104.8

Q ss_pred             cCcceEEEEEecCCccc--ccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccc-cchhhccCcccc
Q 047903          139 DSHMHSLVLDLGSLVLI--HYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDH-TADEFWKMNNLR  215 (430)
Q Consensus       139 ~~~L~~L~L~l~~~~l~--~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~-lp~~i~~L~~L~  215 (430)
                      .++++  .|++++|.++  .+|..+..+++|++|++++|.++.+ ..+ +.+++|++|++++|.+.. +|..+.++++|+
T Consensus        23 ~~~L~--~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           23 PAAVR--ELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNL-PKLPKLKKLELSENRIFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             TTSCS--EEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSC-CCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred             cccCC--EEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhh-ccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence            67888  9999999998  8998899999999999999999988 566 999999999999999987 787788899999


Q ss_pred             eeecCCcccCCCcC-----ccCCCCcccceeecCCCCcch---hhhcCCCCCCceEEEEccc
Q 047903          216 HLNFGSITLPAHPR-----KYCRSLENLNFISALHPCCCT---EDILGRLPNLRNLRIWGDL  269 (430)
Q Consensus       216 ~L~l~~~~~~~~lp-----~~l~~L~~L~~~~~~~~~~~~---~~~l~~l~~L~~L~l~~~~  269 (430)
                      +|++++|.+.. +|     ..+++|+.|.+.++.......   .. +..+++|+.|++.++.
T Consensus        99 ~L~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~-~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A           99 HLNLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESV-FKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             EEECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHH-HTTCSSCCEETTEETT
T ss_pred             EEeccCCccCc-chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHH-HHhCccCcEecCCCCC
Confidence            99999999988 65     556666666665554322222   35 8899999999999886

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.39  E-value=8.9e-13  Score=112.11  Aligned_cols=131  Identities=12%  Similarity=0.040  Sum_probs=99.1

Q ss_pred             CCCCeeEEEEeecCCCccccccc--cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccE
Q 047903          116 SRKNVKRINVFEKQSDFAHLDDY--DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYT  193 (430)
Q Consensus       116 ~~~~~r~L~l~~~~~~~~~~~~~--~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~  193 (430)
                      ...+++.|.+. ++.+..++.-.  .++|+  +|++++|.++.+ ..++.+++|++|++++|.++.+|+.+|+++++|++
T Consensus        17 ~~~~L~~L~l~-~n~l~~i~~~~~~~~~L~--~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           17 NAVRDRELDLR-GYKIPVIENLGATLDQFD--AIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             CTTSCEEEECT-TSCCCSCCCGGGGTTCCS--EEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CcCCceEEEee-CCCCchhHHhhhcCCCCC--EEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            45678888888 66666554322  34888  888899888877 67888889999999999988888776688899999


Q ss_pred             EecCCCCccccch--hhccCcccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903          194 LDMPFSYIDHTAD--EFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL  269 (430)
Q Consensus       194 L~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  269 (430)
                      |++++|.+..+|.  .++.+++|++|++++|.+.. +|.                 ..... ++.+++|+.|++..+.
T Consensus        93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~-----------------~~~~~-~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKH-----------------YRLYV-IYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STT-----------------HHHHH-HHHCTTCSEETTEECC
T ss_pred             EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC-cHh-----------------HHHHH-HHHCCccceeCCCcCC
Confidence            9999998888886  68888889999888888765 331                 01112 5566777777777775

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.38  E-value=6.4e-13  Score=109.65  Aligned_cols=105  Identities=16%  Similarity=0.132  Sum_probs=92.3

Q ss_pred             CCCeeEEEEeecCCCc--cccccc--cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcc-cChHhhhcCCCc
Q 047903          117 RKNVKRINVFEKQSDF--AHLDDY--DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKS-LPSPLLSNLLNL  191 (430)
Q Consensus       117 ~~~~r~L~l~~~~~~~--~~~~~~--~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~-lp~~i~~~L~~L  191 (430)
                      +.++++|.+. ++...  .++..+  +++|+  +|++++|.++.+ ..++.+++|++|++++|.++. +|..+ +++++|
T Consensus        16 ~~~l~~L~l~-~n~l~~~~~~~~~~~l~~L~--~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L   90 (149)
T 2je0_A           16 PSDVKELVLD-NSRSNEGKLEGLTDEFEELE--FLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLA-EKCPNL   90 (149)
T ss_dssp             GGGCSEEECT-TCBCBTTBCCSCCTTCTTCC--EEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHH-HHCTTC
T ss_pred             CccCeEEEcc-CCcCChhHHHHHHhhcCCCc--EEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHh-hhCCCC
Confidence            4678999999 66665  566665  88999  999999999987 788999999999999999998 66655 899999


Q ss_pred             cEEecCCCCccccc--hhhccCcccceeecCCcccCC
Q 047903          192 YTLDMPFSYIDHTA--DEFWKMNNLRHLNFGSITLPA  226 (430)
Q Consensus       192 ~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~  226 (430)
                      ++|++++|.++.+|  ..++.+++|++|++++|.+.+
T Consensus        91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~  127 (149)
T 2je0_A           91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN  127 (149)
T ss_dssp             CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred             CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence            99999999999876  679999999999999999887

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.37  E-value=2e-12  Score=111.68  Aligned_cols=121  Identities=21%  Similarity=0.219  Sum_probs=101.2

Q ss_pred             EEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccch-hhccCcccceeecCCccc
Q 047903          146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTAD-EFWKMNNLRHLNFGSITL  224 (430)
Q Consensus       146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~  224 (430)
                      +++++++.++.+|..+.  .+|++|++++|.++.+|..+ .++++|++|++++|.++.++. .+.++++|++|++++|.+
T Consensus        14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~-~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           14 VVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKEL-SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             EEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGG-GGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHh-hcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            78999999999997664  58999999999999999777 999999999999999998875 489999999999999998


Q ss_pred             CCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEec
Q 047903          225 PAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVS  293 (430)
Q Consensus       225 ~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~  293 (430)
                      .. +|                    +.. +..+++|+.|++++|.  .....+..+..+++|+.|++++
T Consensus        91 ~~-i~--------------------~~~-f~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~~  135 (193)
T 2wfh_A           91 RC-IP--------------------PRT-FDGLKSLRLLSLHGND--ISVVPEGAFNDLSALSHLAIGA  135 (193)
T ss_dssp             CB-CC--------------------TTT-TTTCTTCCEEECCSSC--CCBCCTTTTTTCTTCCEEECCS
T ss_pred             CE-eC--------------------HHH-hCCCCCCCEEECCCCC--CCeeChhhhhcCccccEEEeCC
Confidence            87 32                    233 7788899999999886  3333334577899999999986

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.36  E-value=1.2e-12  Score=113.02  Aligned_cols=123  Identities=16%  Similarity=0.137  Sum_probs=68.4

Q ss_pred             EEEEeecCCCccccccccCcceEEEEEecCCccccccc--ccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCC
Q 047903          122 RINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLS--GIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFS  199 (430)
Q Consensus       122 ~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~--~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~  199 (430)
                      .+.+. ++....++..+..+++  +|++++|.++.++.  .++.+++|++|++++|+++.+++..|+++++|++|+|++|
T Consensus        12 ~l~~s-~~~l~~ip~~~~~~l~--~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           12 TVDCT-GRGLKEIPRDIPLHTT--ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             EEECT-TSCCSSCCSCCCTTCS--EEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             EEEcC-CCCcCcCccCCCCCCC--EEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            44444 4444445554444555  56666666655543  2556666666666666666553222266666666666666


Q ss_pred             Cccccchh-hccCcccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903          200 YIDHTADE-FWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL  269 (430)
Q Consensus       200 ~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  269 (430)
                      .++.++.. +.++++|++|++++|.+.+                     ..+.. ++.+++|+.|++.+|.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~---------------------~~~~~-~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A           89 KIKEISNKMFLGLHQLKTLNLYDNQISC---------------------VMPGS-FEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCE---------------------ECTTS-STTCTTCCEEECTTCC
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCe---------------------eCHHH-hhcCCCCCEEEeCCCC
Confidence            66555433 5556666666666665554                     22333 5666667777776664

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.34  E-value=4.2e-12  Score=108.01  Aligned_cols=103  Identities=20%  Similarity=0.203  Sum_probs=73.1

Q ss_pred             eEEEEeecCCCccccccccCcceEEEEEecCCccccccc-ccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCC
Q 047903          121 KRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLS-GIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFS  199 (430)
Q Consensus       121 r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~  199 (430)
                      +.+.+. ++....++..+.++++  .|++++|.++.+|. .++.+++|++|++++|.++.+|...|+++++|++|++++|
T Consensus        10 ~~l~~~-~~~l~~~p~~~~~~l~--~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A           10 TEIRCN-SKGLTSVPTGIPSSAT--RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TEEECC-SSCCSSCCTTCCTTCS--EEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEec-CCCCccCCCCCCCCCc--EEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            345555 5555556655566777  77778777776664 4577778888888888777777665577888888888888


Q ss_pred             Cccccchh-hccCcccceeecCCcccCC
Q 047903          200 YIDHTADE-FWKMNNLRHLNFGSITLPA  226 (430)
Q Consensus       200 ~l~~lp~~-i~~L~~L~~L~l~~~~~~~  226 (430)
                      .++.+|.. +.++++|++|++++|.+..
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~  114 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKS  114 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceE
Confidence            77777664 5777788888887777765

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.33  E-value=2e-12  Score=111.59  Aligned_cols=110  Identities=18%  Similarity=0.176  Sum_probs=95.3

Q ss_pred             CCCeeEEEEeecCCCcccccc--c--cCcceEEEEEecCCccccc-ccccccccCCceeecCCCCCcccChHhhhcCCCc
Q 047903          117 RKNVKRINVFEKQSDFAHLDD--Y--DSHMHSLVLDLGSLVLIHY-LSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNL  191 (430)
Q Consensus       117 ~~~~r~L~l~~~~~~~~~~~~--~--~~~L~~L~L~l~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L  191 (430)
                      +..++.|.+. ++.+..++..  +  +++|+  +|++++|.++.+ |..|+++++|++|++++|+++.++...|+++++|
T Consensus        28 ~~~l~~L~l~-~n~i~~~~~~~~~~~l~~L~--~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  104 (192)
T 1w8a_A           28 PLHTTELLLN-DNELGRISSDGLFGRLPHLV--KLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQL  104 (192)
T ss_dssp             CTTCSEEECC-SCCCCSBCCSCSGGGCTTCC--EEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTC
T ss_pred             CCCCCEEECC-CCcCCccCCccccccCCCCC--EEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCC
Confidence            4589999999 7777766653  4  88888  999999999976 6789999999999999999999877655999999


Q ss_pred             cEEecCCCCcccc-chhhccCcccceeecCCcccCCCcC
Q 047903          192 YTLDMPFSYIDHT-ADEFWKMNNLRHLNFGSITLPAHPR  229 (430)
Q Consensus       192 ~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~lp  229 (430)
                      ++|++++|.++.+ |..+..+++|++|++++|.+....+
T Consensus       105 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          105 KTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            9999999999976 6669999999999999999987433

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.33  E-value=1.6e-12  Score=134.75  Aligned_cols=148  Identities=16%  Similarity=0.123  Sum_probs=74.2

Q ss_pred             CCCeeEEEEeecCCCccccccc--cCcceEE---EEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCc
Q 047903          117 RKNVKRINVFEKQSDFAHLDDY--DSHMHSL---VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNL  191 (430)
Q Consensus       117 ~~~~r~L~l~~~~~~~~~~~~~--~~~L~~L---~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L  191 (430)
                      ..+++++++. .+.....+...  ...|+.+   .++++.|.+...+..+..+..|+.|+|++|.+..+|..+ .++++|
T Consensus       172 ~~~~~~l~L~-~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~-~~l~~L  249 (727)
T 4b8c_D          172 TPLTPKIELF-ANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANI-FKYDFL  249 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSCCSCCCGGG-GGCCSC
T ss_pred             CCccceEEee-CCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhh-cCCCCC
Confidence            3456777776 44443333332  2223221   334444444544566777777777777777777777777 577777


Q ss_pred             cEEecCCCCccccchhhccCcccceeecCCcccCCCcC---ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEcc
Q 047903          192 YTLDMPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPR---KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGD  268 (430)
Q Consensus       192 ~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp---~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  268 (430)
                      ++|+|++|.++.+|..++++++|++|+|++|.+.. +|   +.+++|+.|.+.++... ..+.. ++.+++|+.|++++|
T Consensus       250 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~-~lp~~-~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          250 TRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT-TLPWE-FGNLCNLQFLGVEGN  326 (727)
T ss_dssp             SCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSS-CCSSGGGGTTCSEEECCSSCCC-CCCSS-TTSCTTCCCEECTTS
T ss_pred             CEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCc-cChhhcCCCCCCEEECCCCCCC-ccChh-hhcCCCccEEeCCCC
Confidence            77777777777777777777777777777777775 77   45555555555554432 34555 778888888888877


Q ss_pred             c
Q 047903          269 L  269 (430)
Q Consensus       269 ~  269 (430)
                      .
T Consensus       327 ~  327 (727)
T 4b8c_D          327 P  327 (727)
T ss_dssp             C
T ss_pred             c
Confidence            6

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.33  E-value=1.9e-12  Score=130.24  Aligned_cols=100  Identities=20%  Similarity=0.174  Sum_probs=65.2

Q ss_pred             CCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceeecCCcccCCCcC--ccCCCCcccceeec
Q 047903          166 LLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPR--KYCRSLENLNFISA  243 (430)
Q Consensus       166 ~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp--~~l~~L~~L~~~~~  243 (430)
                      .|++|++++|.++.+|. + +++++|++|+|++|.++.+|..++++++|++|++++|.+.+ +|  +.+++|+.|.+.++
T Consensus       442 ~L~~L~Ls~n~l~~lp~-~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp~l~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-L-EQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VDGVANLPRLQELLLCNN  518 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-G-GGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCSS
T ss_pred             CceEEEecCCCCCCCcC-c-cccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-CcccCCCCCCcEEECCCC
Confidence            46666666666666665 5 66666777777666666666666666677777776666666 66  45555555555544


Q ss_pred             CCCCcc-hhhhcCCCCCCceEEEEccc
Q 047903          244 LHPCCC-TEDILGRLPNLRNLRIWGDL  269 (430)
Q Consensus       244 ~~~~~~-~~~~l~~l~~L~~L~l~~~~  269 (430)
                      ...... +.. ++.+++|+.|++++|.
T Consensus       519 ~l~~~~~p~~-l~~l~~L~~L~L~~N~  544 (567)
T 1dce_A          519 RLQQSAAIQP-LVSCPRLVLLNLQGNS  544 (567)
T ss_dssp             CCCSSSTTGG-GGGCTTCCEEECTTSG
T ss_pred             CCCCCCCcHH-HhcCCCCCEEEecCCc
Confidence            433333 556 7788888888888775

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.32  E-value=3.9e-12  Score=107.84  Aligned_cols=103  Identities=16%  Similarity=0.157  Sum_probs=86.2

Q ss_pred             eEEEEeecCCCccccccccCcceEEEEEecCCccccc-ccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCC
Q 047903          121 KRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHY-LSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFS  199 (430)
Q Consensus       121 r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~  199 (430)
                      +.+.+. ++....+|..+.++|+  +|++++|.++.+ |..|+++++|++|+|++|+++.+|..+|+++++|++|+|++|
T Consensus        15 ~~l~~~-~n~l~~iP~~~~~~L~--~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQ-NIRLASVPAGIPTDKQ--RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECC-SSCCSSCCSCCCTTCS--EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeC-CCCCCccCCCcCCCCc--EEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            456666 6666677777788888  889999998877 467888999999999999999888877688999999999999


Q ss_pred             Cccccchh-hccCcccceeecCCcccCC
Q 047903          200 YIDHTADE-FWKMNNLRHLNFGSITLPA  226 (430)
Q Consensus       200 ~l~~lp~~-i~~L~~L~~L~l~~~~~~~  226 (430)
                      .++.+|.. +.++++|++|++++|.+..
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCccc
Confidence            88888876 8889999999999998876

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.31  E-value=4.6e-12  Score=106.98  Aligned_cols=103  Identities=17%  Similarity=0.151  Sum_probs=84.3

Q ss_pred             eEEEEeecCCCccccccccCcceEEEEEecCCccccc-ccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCC
Q 047903          121 KRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHY-LSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFS  199 (430)
Q Consensus       121 r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~  199 (430)
                      +.+.+. ++....++..+.++++  +|++++|.++.+ |..|+++++|++|++++|+++.+|+..|.++++|++|+|++|
T Consensus        12 ~~l~~s-~n~l~~ip~~~~~~l~--~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCS-GKSLASVPTGIPTTTQ--VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECT-TSCCSSCCSCCCTTCS--EEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeC-CCCcCccCccCCCCCc--EEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            456666 6666667777778888  888899988877 467888889999999999888888777688899999999998


Q ss_pred             Cccccchh-hccCcccceeecCCcccCC
Q 047903          200 YIDHTADE-FWKMNNLRHLNFGSITLPA  226 (430)
Q Consensus       200 ~l~~lp~~-i~~L~~L~~L~l~~~~~~~  226 (430)
                      .++.+|.. +.++++|++|++++|.+..
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            88888775 7888899999998888775

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.30  E-value=1.1e-13  Score=120.07  Aligned_cols=124  Identities=19%  Similarity=0.139  Sum_probs=76.0

Q ss_pred             cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceee
Q 047903          139 DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLN  218 (430)
Q Consensus       139 ~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~  218 (430)
                      +++|+  +|++++|.++.+| .++.+++|++|++++|.++.+|..+ ..+++|++|++++|.++.+| .++++++|++|+
T Consensus        47 l~~L~--~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~-~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~  121 (198)
T 1ds9_A           47 LKACK--HLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLD-AVADTLEELWISYNQIASLS-GIEKLVNLRVLY  121 (198)
T ss_dssp             TTTCS--EEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHH-HHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEE
T ss_pred             CCCCC--EEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchh-hcCCcCCEEECcCCcCCcCC-ccccCCCCCEEE
Confidence            55666  6666666666655 5566666666666666666666554 55666666666666666655 356666666666


Q ss_pred             cCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHH----------HHhcCCCCCCE
Q 047903          219 FGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLS----------QSLCTLTCLES  288 (430)
Q Consensus       219 l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~----------~~l~~l~~L~~  288 (430)
                      +++|.+.. +                   ..+.. +..+++|+.|++.+|.  .....+          ..+..+++|+.
T Consensus       122 l~~N~i~~-~-------------------~~~~~-l~~l~~L~~L~l~~N~--l~~~~~~~~~~~~~~~~~~~~l~~L~~  178 (198)
T 1ds9_A          122 MSNNKITN-W-------------------GEIDK-LAALDKLEDLLLAGNP--LYNDYKENNATSEYRIEVVKRLPNLKK  178 (198)
T ss_dssp             ESEEECCC-H-------------------HHHHH-HTTTTTCSEEEECSCH--HHHHHHTTTTHHHHHHHHHHHCSSCSE
T ss_pred             CCCCcCCc-h-------------------hHHHH-HhcCCCCCEEEecCCc--cccccccccchHHHHHHHHHhCCCcEE
Confidence            66666554 1                   12245 7888889999998885  322221          23556666666


Q ss_pred             EE
Q 047903          289 LK  290 (430)
Q Consensus       289 L~  290 (430)
                      |+
T Consensus       179 Ld  180 (198)
T 1ds9_A          179 LD  180 (198)
T ss_dssp             EC
T ss_pred             EC
Confidence            65

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.30  E-value=9.3e-12  Score=105.81  Aligned_cols=120  Identities=21%  Similarity=0.210  Sum_probs=95.8

Q ss_pred             EEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchh-hccCcccceeecCCccc
Q 047903          146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADE-FWKMNNLRHLNFGSITL  224 (430)
Q Consensus       146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~  224 (430)
                      .++++++.++.+|..+.  ++|++|++++|+++.+|...|+++++|++|++++|.++.+|.. ++++++|++|++++|.+
T Consensus        11 ~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l   88 (177)
T 2o6r_A           11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL   88 (177)
T ss_dssp             EEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence            78899999999986554  6899999999999999877669999999999999999999876 68999999999999999


Q ss_pred             CCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903          225 PAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL  269 (430)
Q Consensus       225 ~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  269 (430)
                      .. +|    ..+++|+.|.+.++......... +..+++|+.|++.+|.
T Consensus        89 ~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           89 QS-LPNGVFDKLTQLKELALDTNQLKSVPDGI-FDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             CC-CCTTTTTTCTTCCEEECCSSCCSCCCTTT-TTTCTTCCEEECCSSC
T ss_pred             cc-cCHHHhhCCcccCEEECcCCcceEeCHHH-hcCCcccCEEEecCCC
Confidence            98 66    34556666655555433222333 5777888888888775

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.28  E-value=4e-12  Score=108.06  Aligned_cols=126  Identities=14%  Similarity=0.112  Sum_probs=101.0

Q ss_pred             cCcceEEEEEecCCccccccccccccc-CCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhh-ccCcccce
Q 047903          139 DSHMHSLVLDLGSLVLIHYLSGIENLF-LLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEF-WKMNNLRH  216 (430)
Q Consensus       139 ~~~L~~L~L~l~~~~l~~lp~~~~~l~-~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i-~~L~~L~~  216 (430)
                      +.+|+  .|++++|.++.+|. +..+. +|++|++++|.++.+ ..+ +++++|++|++++|.++.+|..+ +.+++|++
T Consensus        18 ~~~L~--~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           18 AVRDR--ELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGF-PLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             TTSCE--EEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCC-CCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             cCCce--EEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-ccc-ccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            67788  99999999998865 55555 999999999999988 456 99999999999999999988664 89999999


Q ss_pred             eecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHH----HhcCCCCCCEEEEe
Q 047903          217 LNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQ----SLCTLTCLESLKLV  292 (430)
Q Consensus       217 L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~----~l~~l~~L~~L~l~  292 (430)
                      |++++|.+.. +|                   .... ++.+++|+.|++++|.  . ...+.    .+..+++|+.|+++
T Consensus        93 L~L~~N~i~~-~~-------------------~~~~-l~~l~~L~~L~l~~N~--i-~~~~~~~~~~~~~l~~L~~Ld~~  148 (176)
T 1a9n_A           93 LILTNNSLVE-LG-------------------DLDP-LASLKSLTYLCILRNP--V-TNKKHYRLYVIYKVPQVRVLDFQ  148 (176)
T ss_dssp             EECCSCCCCC-GG-------------------GGGG-GGGCTTCCEEECCSSG--G-GGSTTHHHHHHHHCTTCSEETTE
T ss_pred             EECCCCcCCc-ch-------------------hhHh-hhcCCCCCEEEecCCC--C-CCcHhHHHHHHHHCCccceeCCC
Confidence            9999998865 32                   1234 7788899999999986  2 22232    47788999999987


Q ss_pred             c
Q 047903          293 S  293 (430)
Q Consensus       293 ~  293 (430)
                      .
T Consensus       149 ~  149 (176)
T 1a9n_A          149 K  149 (176)
T ss_dssp             E
T ss_pred             c
Confidence            6

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.28  E-value=6.1e-12  Score=126.54  Aligned_cols=119  Identities=22%  Similarity=0.244  Sum_probs=70.8

Q ss_pred             cceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceeecC
Q 047903          141 HMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFG  220 (430)
Q Consensus       141 ~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~  220 (430)
                      .|+  +|++++|.++.+|. ++.+++|++|++++|.++.+|..+ +++++|++|+|++|.++.+| .++++++|++|+++
T Consensus       442 ~L~--~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~-~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVR--VLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPAL-AALRCLEVLQASDNALENVD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCS--EEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGG-GGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECC
T ss_pred             Cce--EEEecCCCCCCCcC-ccccccCcEeecCcccccccchhh-hcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECC
Confidence            455  66667776666665 666667777777777766666666 67777777777777666666 56667777777777


Q ss_pred             CcccCCCc-C---ccCCCCcccceeecCCCCc--chhhhcCCCCCCceEE
Q 047903          221 SITLPAHP-R---KYCRSLENLNFISALHPCC--CTEDILGRLPNLRNLR  264 (430)
Q Consensus       221 ~~~~~~~l-p---~~l~~L~~L~~~~~~~~~~--~~~~~l~~l~~L~~L~  264 (430)
                      +|.+.+.. |   +.+++|+.|.+.++.....  .....+..+++|+.|+
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            77666622 5   4455555554444332111  1111133466777664

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.26  E-value=6.7e-12  Score=130.13  Aligned_cols=102  Identities=25%  Similarity=0.254  Sum_probs=68.4

Q ss_pred             cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceee
Q 047903          139 DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLN  218 (430)
Q Consensus       139 ~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~  218 (430)
                      +..|+  +|+|++|.+..+|..+.++++|++|+|++|.++.+|..+ ++|++|++|+|++|.++.+|..+++|++|++|+
T Consensus       223 l~~L~--~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~  299 (727)
T 4b8c_D          223 DQLWH--ALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEI-KNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY  299 (727)
T ss_dssp             CCCCC--EEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGG-GGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE
T ss_pred             CCCCc--EEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhh-hCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE
Confidence            55666  777777777777766667777777777777777777666 777777777777777777777777777777777


Q ss_pred             cCCcccCCCcC---ccCCCCcccceeecC
Q 047903          219 FGSITLPAHPR---KYCRSLENLNFISAL  244 (430)
Q Consensus       219 l~~~~~~~~lp---~~l~~L~~L~~~~~~  244 (430)
                      |++|.+.. +|   +.+++|+.|.+.++.
T Consensus       300 L~~N~l~~-lp~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          300 FFDNMVTT-LPWEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             CCSSCCCC-CCSSTTSCTTCCCEECTTSC
T ss_pred             CCCCCCCc-cChhhhcCCCccEEeCCCCc
Confidence            77777665 66   344444444444433

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.18  E-value=4.7e-11  Score=100.73  Aligned_cols=100  Identities=18%  Similarity=0.216  Sum_probs=83.2

Q ss_pred             EEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchh-hccCcccceeecCCccc
Q 047903          146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADE-FWKMNNLRHLNFGSITL  224 (430)
Q Consensus       146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~  224 (430)
                      +++++++.++.+|..+.  ++|++|++++|.++.+++..|+++++|++|+|++|+++.+|.. +.++++|++|++++|.+
T Consensus        13 ~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l   90 (170)
T 3g39_A           13 TVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL   90 (170)
T ss_dssp             EEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc
Confidence            89999999999998764  7899999999999999655459999999999999999999876 68999999999999999


Q ss_pred             CCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903          225 PAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL  269 (430)
Q Consensus       225 ~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  269 (430)
                      .. +|                    ... +..+++|+.|++.+|.
T Consensus        91 ~~-~~--------------------~~~-~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           91 KS-IP--------------------RGA-FDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             CC-CC--------------------TTT-TTTCTTCCEEECCSSC
T ss_pred             CE-eC--------------------HHH-hcCCCCCCEEEeCCCC
Confidence            87 44                    112 5566666777776664

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.18  E-value=5.4e-11  Score=100.76  Aligned_cols=81  Identities=20%  Similarity=0.226  Sum_probs=72.8

Q ss_pred             EEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchh-hccCcccceeecCCccc
Q 047903          146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADE-FWKMNNLRHLNFGSITL  224 (430)
Q Consensus       146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~  224 (430)
                      .++++++.++.+|..+.  ++|++|++++|.++.+++..|+++++|++|+|++|+++.+|.. +.++++|++|++++|.+
T Consensus        16 ~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l   93 (174)
T 2r9u_A           16 LVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL   93 (174)
T ss_dssp             EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence            88999999999998775  8999999999999999655559999999999999999999886 58999999999999999


Q ss_pred             CCCcC
Q 047903          225 PAHPR  229 (430)
Q Consensus       225 ~~~lp  229 (430)
                      .. +|
T Consensus        94 ~~-l~   97 (174)
T 2r9u_A           94 KS-IP   97 (174)
T ss_dssp             CC-CC
T ss_pred             ce-eC
Confidence            87 54

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.15  E-value=7.2e-13  Score=114.98  Aligned_cols=105  Identities=17%  Similarity=0.138  Sum_probs=93.1

Q ss_pred             CCCCeeEEEEeecCCCccccccc--cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccE
Q 047903          116 SRKNVKRINVFEKQSDFAHLDDY--DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYT  193 (430)
Q Consensus       116 ~~~~~r~L~l~~~~~~~~~~~~~--~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~  193 (430)
                      ....++.|.+. ++.+..++ .+  +++|+  .|++++|.++.+|..+..+++|++|++++|+++.+| .+ +++++|++
T Consensus        46 ~l~~L~~L~ls-~n~l~~l~-~~~~l~~L~--~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~-~~l~~L~~  119 (198)
T 1ds9_A           46 TLKACKHLALS-TNNIEKIS-SLSGMENLR--ILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GI-EKLVNLRV  119 (198)
T ss_dssp             HTTTCSEEECS-EEEESCCC-CHHHHTTCC--EEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HH-HHHHHSSE
T ss_pred             cCCCCCEEECC-CCCCcccc-ccccCCCCC--EEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cc-ccCCCCCE
Confidence            35679999998 66666666 55  89999  999999999999988888999999999999999987 57 99999999


Q ss_pred             EecCCCCccccch--hhccCcccceeecCCcccCC
Q 047903          194 LDMPFSYIDHTAD--EFWKMNNLRHLNFGSITLPA  226 (430)
Q Consensus       194 L~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~  226 (430)
                      |++++|.++.+|.  .+..+++|++|++++|.+.+
T Consensus       120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A          120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             EEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             EECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence            9999999998875  68999999999999998866

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.13  E-value=2e-10  Score=107.80  Aligned_cols=213  Identities=13%  Similarity=-0.010  Sum_probs=110.0

Q ss_pred             ccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchh-hccCcccceeecCCccc----CCCcC----ccCCC
Q 047903          164 LFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADE-FWKMNNLRHLNFGSITL----PAHPR----KYCRS  234 (430)
Q Consensus       164 l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~----~~~lp----~~l~~  234 (430)
                      +++|+.+++.. .++.+++..|.+|++|+.+++++|.+..++.. |..+.++..+.+..+..    .. +.    ..+.+
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~-i~~~~f~~~~~  177 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNR-WEHFAFIEGEP  177 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTT-TTTSCEEESCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccc-ccccccccccc
Confidence            56666666655 55555555556666666666666555555443 44444454444333211    00 11    11111


Q ss_pred             CcccceeecCCCCcchhhh---cCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEE-Ecccc
Q 047903          235 LENLNFISALHPCCCTEDI---LGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVL-VEYQF  310 (430)
Q Consensus       235 L~~L~~~~~~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~l  310 (430)
                      |+.  .............+   -....++..+.+.+.-  ...........+++|+.++++.    .+++.+.- .|.++
T Consensus       178 L~~--~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l--~~~~~~~l~~~~~~L~~l~L~~----n~i~~I~~~aF~~~  249 (329)
T 3sb4_A          178 LET--TIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKL--DNADFKLIRDYMPNLVSLDISK----TNATTIPDFTFAQK  249 (329)
T ss_dssp             CEE--EEEECTTCCHHHHHHHTTCCGGGCSEEEEEECC--CHHHHHHHHHHCTTCCEEECTT----BCCCEECTTTTTTC
T ss_pred             cce--eEEecCCCcHHHHHhhcccCccccceEEEeeee--cHHHHHHHHHhcCCCeEEECCC----CCcceecHhhhhCC
Confidence            110  00111101111110   1123455566665543  2222222223467888888863    34665543 45567


Q ss_pred             cCCcceEEEEccccCCcccccccCCCeEEEcCCCCCccc-EEEEeeCCCCCceEEc-CCccccccEeEEeecCCCCcCCC
Q 047903          311 PPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLK-VLHLKSMLWLEEWTMG-IGAMPKLECLIINPCAYLKKMPE  388 (430)
Q Consensus       311 p~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~lp~  388 (430)
                       ++|+.+++.++ +...+          .....++++|+ .+.+.+  +++.+... ...+++|+.+++.++ .++.++.
T Consensus       250 -~~L~~l~l~~n-i~~I~----------~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~  314 (329)
T 3sb4_A          250 -KYLLKIKLPHN-LKTIG----------QRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD-KITTLGD  314 (329)
T ss_dssp             -TTCCEEECCTT-CCEEC----------TTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS-CCCEECT
T ss_pred             -CCCCEEECCcc-cceeh----------HHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC-ccCccch
Confidence             88999988876 32211          00124566787 888875  55555322 235788999998764 5777764


Q ss_pred             -CCCCCCCCCEEEE
Q 047903          389 -QPWCIKSLNKFNC  401 (430)
Q Consensus       389 -~l~~l~~L~~L~l  401 (430)
                       .+.++++|+.++.
T Consensus       315 ~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          315 ELFGNGVPSKLIYK  328 (329)
T ss_dssp             TTTCTTCCCCEEEC
T ss_pred             hhhcCCcchhhhcc
Confidence             6788999998864

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.05  E-value=1.6e-10  Score=127.40  Aligned_cols=90  Identities=17%  Similarity=0.135  Sum_probs=79.7

Q ss_pred             hhhhHHHHhhcCChhhhHHHHhhhcccCCCceechhHHHHHHHhcCCCCCChHHHHHHHHHHHHHCCceeeeecCCCCcE
Q 047903            3 KPLGLWYFKYCRLPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKDLELLINRGFVDTRKRGAGGTI   82 (430)
Q Consensus         3 ~i~~~l~~sY~~L~~~~k~cfl~~~~fp~~~~i~~~~Li~~w~~~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~   82 (430)
                      .+..++++||+.|++++|+||+|||+||+++.|+++.++++|.+++       +.++.++++|+++||++...   ++..
T Consensus       363 ~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~-------~~~~~~l~~L~~~sl~~~~~---~~~~  432 (1249)
T 3sfz_A          363 ALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLET-------EEVEDILQEFVNKSLLFCNR---NGKS  432 (1249)
T ss_dssp             HHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCH-------HHHHHHHHHHHHTTSCEEEE---SSSS
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCH-------HHHHHHHHHHHhccceEEec---CCCc
Confidence            5889999999999999999999999999999999999999997664       55899999999999999765   3344


Q ss_pred             eEEEEChhHHHHHHHHhhhc
Q 047903           83 NTCSVHGRCRPVLLSVAFEA  102 (430)
Q Consensus        83 ~~~~mhd~~~~l~~~~~~~~  102 (430)
                      ..|+|||++|++++..+.++
T Consensus       433 ~~~~~h~l~~~~~~~~~~~~  452 (1249)
T 3sfz_A          433 FCYYLHDLQVDFLTEKNRSQ  452 (1249)
T ss_dssp             EEEECCHHHHHHHHHHTGGG
T ss_pred             eEEEecHHHHHHHHhhhhHH
Confidence            67999999999999886654

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.02  E-value=1.7e-10  Score=119.74  Aligned_cols=84  Identities=19%  Similarity=0.146  Sum_probs=73.7

Q ss_pred             chhhhHHHHhhcCChhhh-HHHHhhhcccCCCceechhHHHHHHHhcCCCCCChHHHHHHHHHHHHHCCceeeeecCCCC
Q 047903            2 EKPLGLWYFKYCRLPFCL-KLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKDLELLINRGFVDTRKRGAGG   80 (430)
Q Consensus         2 ~~i~~~l~~sY~~L~~~~-k~cfl~~~~fp~~~~i~~~~Li~~w~~~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~   80 (430)
                      +.|..+|++||+.||++. |+||+|||+||+++.|.++.++.+|+++|      ++.+..++++|+++||++...     
T Consensus       353 ~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG------eedAe~~L~eLvdRSLLq~d~-----  421 (1221)
T 1vt4_I          353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI------KSDVMVVVNKLHKYSLVEKQP-----  421 (1221)
T ss_dssp             HHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC------SHHHHHHHHHHHTSSSSSBCS-----
T ss_pred             hHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC------HHHHHHHHHHHHhhCCEEEeC-----
Confidence            368899999999999999 99999999999999999999999999998      235889999999999999732     


Q ss_pred             cEeEEEEChhHHHHHH
Q 047903           81 TINTCSVHGRCRPVLL   96 (430)
Q Consensus        81 ~~~~~~mhd~~~~l~~   96 (430)
                      ....|+|||++++++.
T Consensus       422 ~~~rYrMHDLllELr~  437 (1221)
T 1vt4_I          422 KESTISIPSIYLELKV  437 (1221)
T ss_dssp             SSSEEBCCCHHHHHHH
T ss_pred             CCCEEEehHHHHHHhc
Confidence            1257999999998653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.92  E-value=1.6e-09  Score=102.35  Aligned_cols=94  Identities=15%  Similarity=0.103  Sum_probs=64.2

Q ss_pred             CCccccccc--cCcceEEEEEecC-Ccccccc-cccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccc
Q 047903          130 SDFAHLDDY--DSHMHSLVLDLGS-LVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTA  205 (430)
Q Consensus       130 ~~~~~~~~~--~~~L~~L~L~l~~-~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp  205 (430)
                      ....+|. +  +.+|+  .|+|++ |.++.+| ..|+++++|++|+|++|+++.+|+..|++|++|++|+|++|.+..+|
T Consensus        20 ~l~~ip~-l~~~~~L~--~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~   96 (347)
T 2ifg_A           20 ALDSLHH-LPGAENLT--ELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS   96 (347)
T ss_dssp             CCTTTTT-SCSCSCCS--EEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC
T ss_pred             CCCccCC-CCCCCCee--EEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeC
Confidence            4555666 5  55666  777775 7777666 46777777777777777777776555577777777777777777777


Q ss_pred             hhhccCcccceeecCCcccCC
Q 047903          206 DEFWKMNNLRHLNFGSITLPA  226 (430)
Q Consensus       206 ~~i~~L~~L~~L~l~~~~~~~  226 (430)
                      ..+.....|++|++.+|.+..
T Consensus        97 ~~~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           97 WKTVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             STTTCSCCCCEEECCSSCCCC
T ss_pred             HHHcccCCceEEEeeCCCccC
Confidence            654333337777777777664

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.90  E-value=2.3e-09  Score=101.20  Aligned_cols=97  Identities=21%  Similarity=0.090  Sum_probs=81.7

Q ss_pred             EEEecCC-cccccccccccccCCceeecCC-CCCcccChHhhhcCCCccEEecCCCCccccch-hhccCcccceeecCCc
Q 047903          146 VLDLGSL-VLIHYLSGIENLFLLRYLKLNI-PSLKSLPSPLLSNLLNLYTLDMPFSYIDHTAD-EFWKMNNLRHLNFGSI  222 (430)
Q Consensus       146 ~L~l~~~-~l~~lp~~~~~l~~L~~L~L~~-~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~  222 (430)
                      .++.+++ .++.+|. +..+++|++|+|++ |.++.+|+..|++|++|++|+|++|.++.+|. .|+++++|++|+|++|
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            4688888 8999999 99999999999996 99999987655999999999999999998865 5899999999999999


Q ss_pred             ccCCCcC-ccCCC--CcccceeecC
Q 047903          223 TLPAHPR-KYCRS--LENLNFISAL  244 (430)
Q Consensus       223 ~~~~~lp-~~l~~--L~~L~~~~~~  244 (430)
                      .+.. +| ..+..  |+.|.+.++.
T Consensus        91 ~l~~-~~~~~~~~~~L~~l~l~~N~  114 (347)
T 2ifg_A           91 ALES-LSWKTVQGLSLQELVLSGNP  114 (347)
T ss_dssp             CCSC-CCSTTTCSCCCCEEECCSSC
T ss_pred             ccce-eCHHHcccCCceEEEeeCCC
Confidence            9998 87 33333  6666555444

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.82  E-value=7.9e-08  Score=92.35  Aligned_cols=238  Identities=8%  Similarity=0.034  Sum_probs=131.7

Q ss_pred             cceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceeec
Q 047903          141 HMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNF  219 (430)
Q Consensus       141 ~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l  219 (430)
                      +|+  .+.+..+ ++.++ .+|.+ .+|+.+.+.. .++.++...|.+|.+|+.+++..|+++.+|.......+|+.+.+
T Consensus       136 ~L~--~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~l  210 (401)
T 4fdw_A          136 QIA--KVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLL  210 (401)
T ss_dssp             CCS--EEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEEC
T ss_pred             Ccc--EEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEe
Confidence            555  5566544 55555 35555 3577777775 57777666668888888888877777777776444577777777


Q ss_pred             CCcccCCCcC-ccCCCCcccceeecCCCCc-chhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCC-
Q 047903          220 GSITLPAHPR-KYCRSLENLNFISALHPCC-CTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESK-  296 (430)
Q Consensus       220 ~~~~~~~~lp-~~l~~L~~L~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-  296 (430)
                      ..+ +.. ++ ..+.++..|.....+.... ....+|.+ .+|+.+.+...   ....-..+|.++++|+.+.+..+.. 
T Consensus       211 p~~-l~~-I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp~~---i~~I~~~aF~~c~~L~~l~l~~~~~~  284 (401)
T 4fdw_A          211 PVT-LKE-IGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLPNG---VTNIASRAFYYCPELAEVTTYGSTFN  284 (401)
T ss_dssp             CTT-CCE-ECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEETT---CCEECTTTTTTCTTCCEEEEESSCCC
T ss_pred             CCc-hhe-ehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeCCC---ccEEChhHhhCCCCCCEEEeCCcccc
Confidence            643 443 55 3343333333333332111 11122545 66777777443   2222234566777777777754110 


Q ss_pred             CCCceEEEE-EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEc-CCccccccE
Q 047903          297 MPTLSKIVL-VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMG-IGAMPKLEC  374 (430)
Q Consensus       297 ~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~  374 (430)
                      ...+..+.- .|.++ ++|+.+++.++ +...+      .    ....++++|+.+.+..  ++..+... ...+ +|+.
T Consensus       285 ~~~~~~I~~~aF~~c-~~L~~l~l~~~-i~~I~------~----~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~  349 (401)
T 4fdw_A          285 DDPEAMIHPYCLEGC-PKLARFEIPES-IRILG------Q----GLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKE  349 (401)
T ss_dssp             CCTTCEECTTTTTTC-TTCCEECCCTT-CCEEC------T----TTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCE
T ss_pred             CCcccEECHHHhhCC-ccCCeEEeCCc-eEEEh------h----hhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCE
Confidence            001112211 34455 67777777632 22110      0    0123457788888853  45555322 1235 8999


Q ss_pred             eEEeecCCCCcCC-CCCCCCC-CCCEEEEecCh
Q 047903          375 LIINPCAYLKKMP-EQPWCIK-SLNKFNCWWPQ  405 (430)
Q Consensus       375 L~l~~c~~l~~lp-~~l~~l~-~L~~L~l~~~~  405 (430)
                      +.+.++. +..++ ..+.+++ +++.|++-...
T Consensus       350 l~l~~n~-~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          350 VKVEGTT-PPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             EEECCSS-CCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             EEEcCCC-CcccccccccCCCCCccEEEeCHHH
Confidence            9998864 44444 4455664 78889887655

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=98.73  E-value=1.4e-08  Score=103.04  Aligned_cols=86  Identities=17%  Similarity=0.154  Sum_probs=74.9

Q ss_pred             hhhhHHHHhhcCChhhhHHHHhhhcccCCCceechhHHHHHHHhcCCCCCChHHHHHHHHHHHHHCCceeeeecCCCCcE
Q 047903            3 KPLGLWYFKYCRLPFCLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNSEATAEKDLELLINRGFVDTRKRGAGGTI   82 (430)
Q Consensus         3 ~i~~~l~~sY~~L~~~~k~cfl~~~~fp~~~~i~~~~Li~~w~~~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~   82 (430)
                      .|..++..||+.||++.|.||++||+||+|+.|+.+.+...|.+++       +.+..++++|+++||++....   +..
T Consensus       363 ~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~-------~~~~~~l~~L~~~~Ll~~~~~---~~~  432 (591)
T 1z6t_A          363 ALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMET-------EEVEDILQEFVNKSLLFCDRN---GKS  432 (591)
T ss_dssp             HHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCH-------HHHHHHHHHHHHTTSSEEEEE---TTE
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCH-------HHHHHHHHHHHhCcCeEEecC---CCc
Confidence            5788999999999999999999999999999999999999996543       347889999999999986552   334


Q ss_pred             eEEEEChhHHHHHHHH
Q 047903           83 NTCSVHGRCRPVLLSV   98 (430)
Q Consensus        83 ~~~~mhd~~~~l~~~~   98 (430)
                      ..|+||+++++++...
T Consensus       433 ~~~~~H~lv~~~~~~~  448 (591)
T 1z6t_A          433 FRYYLHDLQVDFLTEK  448 (591)
T ss_dssp             EEEECCHHHHHHHHHH
T ss_pred             cEEEEcHHHHHHHHhh
Confidence            6899999999998877

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.69  E-value=1.4e-07  Score=90.67  Aligned_cols=239  Identities=8%  Similarity=0.078  Sum_probs=153.5

Q ss_pred             CCCCCCCCCCeeEEEEeecCCCcccccc-c-cCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhh
Q 047903          110 GDPKGKSRKNVKRINVFEKQSDFAHLDD-Y-DSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLS  186 (430)
Q Consensus       110 ~~~~~~~~~~~r~L~l~~~~~~~~~~~~-~-~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~  186 (430)
                      +...+.. .+++.+.+. ++ +..+.+. + -.+|+  .+.+.. .++.++ ..|.++.+|+.++++.|+++.+|...|.
T Consensus       128 ~~~aF~~-~~L~~i~l~-~~-i~~I~~~aF~~~~L~--~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~  201 (401)
T 4fdw_A          128 PKDAFRN-SQIAKVVLN-EG-LKSIGDMAFFNSTVQ--EIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV  201 (401)
T ss_dssp             CTTTTTT-CCCSEEECC-TT-CCEECTTTTTTCCCC--EEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT
T ss_pred             hHhhccc-CCccEEEeC-CC-ccEECHHhcCCCCce--EEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe
Confidence            3334443 357788876 54 3334443 3 45677  777775 677676 6899999999999999999999988877


Q ss_pred             cCCCccEEecCCCCccccchh-hccCcccceeecCCcccCCCcC-ccC--CCCcccceeecCCCCcchhhhcCCCCCCce
Q 047903          187 NLLNLYTLDMPFSYIDHTADE-FWKMNNLRHLNFGSITLPAHPR-KYC--RSLENLNFISALHPCCCTEDILGRLPNLRN  262 (430)
Q Consensus       187 ~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp-~~l--~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~  262 (430)
                       ..+|+.+.+.. .++.++.. |.++++|+.+++..+ +.. ++ ..+  .+|+.+.+- .+-....... |.++++|+.
T Consensus       202 -~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~-I~~~aF~~~~L~~i~lp-~~i~~I~~~a-F~~c~~L~~  275 (401)
T 4fdw_A          202 -YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VST-IGQEAFRESGITTVKLP-NGVTNIASRA-FYYCPELAE  275 (401)
T ss_dssp             -TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCE-ECTTTTTTCCCSEEEEE-TTCCEECTTT-TTTCTTCCE
T ss_pred             -ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccC-ccccccccCCccEEEeC-CCccEEChhH-hhCCCCCCE
Confidence             68999999985 47788765 889999999999875 333 55 333  445555441 1111122334 889999999


Q ss_pred             EEEEccccc---cHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEE-EcccccCCcceEEEEccccCCcccccccCCCeE
Q 047903          263 LRIWGDLSY---YQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVL-VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKL  338 (430)
Q Consensus       263 L~l~~~~~~---~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~  338 (430)
                      +.+.++...   ........|.++++|+.+.+.     .+++.+.- .|.++ ++|+.+.|..+ +...+      ..  
T Consensus       276 l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-----~~i~~I~~~aF~~c-~~L~~l~lp~~-l~~I~------~~--  340 (401)
T 4fdw_A          276 VTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-----ESIRILGQGLLGGN-RKVTQLTIPAN-VTQIN------FS--  340 (401)
T ss_dssp             EEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-----TTCCEECTTTTTTC-CSCCEEEECTT-CCEEC------TT--
T ss_pred             EEeCCccccCCcccEECHHHhhCCccCCeEEeC-----CceEEEhhhhhcCC-CCccEEEECcc-ccEEc------HH--
Confidence            999876411   001233567888999999884     45666543 45566 88999988554 22110      00  


Q ss_pred             EEcCCCCCcccEEEEeeCCCCCceEEc-CCcc-ccccEeEEee
Q 047903          339 TCGSDGFPNLKVLHLKSMLWLEEWTMG-IGAM-PKLECLIINP  379 (430)
Q Consensus       339 ~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~-~~L~~L~l~~  379 (430)
                        ....+ +|+.+.+.+ +....+... ...+ .+++.|++-.
T Consensus       341 --aF~~~-~L~~l~l~~-n~~~~l~~~~F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          341 --AFNNT-GIKEVKVEG-TTPPQVFEKVWYGFPDDITVIRVPA  379 (401)
T ss_dssp             --SSSSS-CCCEEEECC-SSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred             --hCCCC-CCCEEEEcC-CCCcccccccccCCCCCccEEEeCH
Confidence              12345 788888887 333333211 1223 2566777654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.65  E-value=3.1e-08  Score=92.69  Aligned_cols=167  Identities=10%  Similarity=-0.000  Sum_probs=92.5

Q ss_pred             cCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCc----------------
Q 047903          139 DSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYI----------------  201 (430)
Q Consensus       139 ~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l----------------  201 (430)
                      +++|+  .+++.+ .++.++ ..|.++++|+.++++.|.+..+++..|.++.++..+.+.....                
T Consensus       100 ~~~L~--~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~  176 (329)
T 3sb4_A          100 KQTLE--KVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE  176 (329)
T ss_dssp             CTTCC--C-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred             cCCCc--EEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence            35555  666666 666565 3566777777777777766666666556666666665544100                


Q ss_pred             -----------cccchh---------------------------h-ccCcccceeecCCcccCCCcC-ccCCCCccccee
Q 047903          202 -----------DHTADE---------------------------F-WKMNNLRHLNFGSITLPAHPR-KYCRSLENLNFI  241 (430)
Q Consensus       202 -----------~~lp~~---------------------------i-~~L~~L~~L~l~~~~~~~~lp-~~l~~L~~L~~~  241 (430)
                                 ..+|..                           + ..+++|+.+++++|.+.. +| ..+.++..|...
T Consensus       177 ~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~-I~~~aF~~~~~L~~l  255 (329)
T 3sb4_A          177 PLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATT-IPDFTFAQKKYLLKI  255 (329)
T ss_dssp             CCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCE-ECTTTTTTCTTCCEE
T ss_pred             ccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcce-ecHhhhhCCCCCCEE
Confidence                       001110                           0 126778888888777776 77 444444444444


Q ss_pred             ecCCCC-cchhhhcCCCCCCc-eEEEEccccccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEE-EcccccCCcceE
Q 047903          242 SALHPC-CCTEDILGRLPNLR-NLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVL-VEYQFPPRLTHL  317 (430)
Q Consensus       242 ~~~~~~-~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L  317 (430)
                      ..+... .....+|.++++|+ .+.+...   ....-..+|.++++|+.+++.    +.+++.+.- .|.++ ++|+.+
T Consensus       256 ~l~~ni~~I~~~aF~~~~~L~~~l~l~~~---l~~I~~~aF~~c~~L~~l~l~----~n~i~~I~~~aF~~~-~~L~~l  326 (329)
T 3sb4_A          256 KLPHNLKTIGQRVFSNCGRLAGTLELPAS---VTAIEFGAFMGCDNLRYVLAT----GDKITTLGDELFGNG-VPSKLI  326 (329)
T ss_dssp             ECCTTCCEECTTTTTTCTTCCEEEEECTT---CCEECTTTTTTCTTEEEEEEC----SSCCCEECTTTTCTT-CCCCEE
T ss_pred             ECCcccceehHHHhhCChhccEEEEEccc---ceEEchhhhhCCccCCEEEeC----CCccCccchhhhcCC-cchhhh
Confidence            443211 12222377778887 8877663   222333567777888888875    344554432 33444 555554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.61  E-value=1.3e-08  Score=96.92  Aligned_cols=38  Identities=13%  Similarity=0.104  Sum_probs=17.9

Q ss_pred             CCCccEEecCCCCccc-----cchhhccCcccceeecCCcccC
Q 047903          188 LLNLYTLDMPFSYIDH-----TADEFWKMNNLRHLNFGSITLP  225 (430)
Q Consensus       188 L~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~~  225 (430)
                      .++|++|+|++|.++.     ++..+...++|++|+|++|.+.
T Consensus       154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~  196 (372)
T 3un9_A          154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG  196 (372)
T ss_dssp             TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred             CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence            3445555555554432     2333344455555555555443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.61  E-value=4.9e-09  Score=99.78  Aligned_cols=163  Identities=17%  Similarity=0.123  Sum_probs=87.5

Q ss_pred             cCcceEEEEEecCCcccccc-ccccc-----ccCCceeecCCCCCccc-ChHhhhcCCCccEEecCCCCccccch-----
Q 047903          139 DSHMHSLVLDLGSLVLIHYL-SGIEN-----LFLLRYLKLNIPSLKSL-PSPLLSNLLNLYTLDMPFSYIDHTAD-----  206 (430)
Q Consensus       139 ~~~L~~L~L~l~~~~l~~lp-~~~~~-----l~~L~~L~L~~~~i~~l-p~~i~~~L~~L~~L~L~~~~l~~lp~-----  206 (430)
                      .++++  .|++++|.++... ..+..     ..+|++|+|++|.++.. ...++..+++|+.|+|++|.++....     
T Consensus        71 ~~~L~--~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~  148 (372)
T 3un9_A           71 LSSLR--QLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD  148 (372)
T ss_dssp             HTTCC--EEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred             HhhCC--EEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence            45666  7777777766322 22222     25777888888777632 22332456677788888777654321     


Q ss_pred             hh-ccCcccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccc--cHHHHHHHhcCC
Q 047903          207 EF-WKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSY--YQSLLSQSLCTL  283 (430)
Q Consensus       207 ~i-~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~~l~~l  283 (430)
                      .+ ...++|++|++++|.+.. ..                ....... +...++|++|++++|.-.  ....+...+...
T Consensus       149 ~L~~~~~~L~~L~Ls~n~l~~-~~----------------~~~l~~~-L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~  210 (372)
T 3un9_A          149 LLLHDQCQITTLRLSNNPLTA-AG----------------VAVLMEG-LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN  210 (372)
T ss_dssp             HHHSTTCCCCEEECCSSCCHH-HH----------------HHHHHHH-HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGC
T ss_pred             HHHhcCCccceeeCCCCCCCh-HH----------------HHHHHHH-HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcC
Confidence            12 235677777777776654 00                0011122 456667777777777511  112334555566


Q ss_pred             CCCCEEEEecCCCCCCceEEEE-----EcccccCCcceEEEEccccCC
Q 047903          284 TCLESLKLVSESKMPTLSKIVL-----VEYQFPPRLTHLSFSNTELME  326 (430)
Q Consensus       284 ~~L~~L~l~~~~~~~~L~~L~l-----~~~~lp~~L~~L~L~~~~l~~  326 (430)
                      ++|+.|+|++    ..+.....     .+... ++|++|+|++|.+..
T Consensus       211 ~~L~~L~Ls~----N~i~~~g~~~l~~~L~~~-~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          211 RQLQELNVAY----NGAGDTAALALARAAREH-PSLELLHLYFNELSS  253 (372)
T ss_dssp             SCCCEEECCS----SCCCHHHHHHHHHHHHHC-SSCCEEECTTSSCCH
T ss_pred             CCcCeEECCC----CCCCHHHHHHHHHHHHhC-CCCCEEeccCCCCCH
Confidence            6666666664    11211100     11233 567777777776543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.27  E-value=1.4e-05  Score=76.56  Aligned_cols=270  Identities=13%  Similarity=0.097  Sum_probs=131.9

Q ss_pred             cCCCCCCCCCCeeEEEEeecCCCcccccc-c--cCcceEEEEEecCCcccccc-cccccccCCceeecCCC---------
Q 047903          109 FGDPKGKSRKNVKRINVFEKQSDFAHLDD-Y--DSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIP---------  175 (430)
Q Consensus       109 ~~~~~~~~~~~~r~L~l~~~~~~~~~~~~-~--~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~---------  175 (430)
                      ++...+..-.+++.+.+. +. +..+.+. +  +.+|+  .+++..+ ++.++ ..|.++..|+.+.+..+         
T Consensus        62 Ig~~AF~~c~~L~~i~lp-~~-i~~I~~~aF~~c~~L~--~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF  136 (394)
T 4fs7_A           62 IGYAAFQGCRKVTEIKIP-ST-VREIGEFAFENCSKLE--IINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAF  136 (394)
T ss_dssp             ECTTTTTTCTTEEEEECC-TT-CCEECTTTTTTCTTCC--EECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTT
T ss_pred             hHHHHhhCCCCceEEEeC-CC-ccCcchhHhhCCCCCc--EEEeCCC-ceEccchhhcccccchhhcccCceeeecceee
Confidence            566666666678888776 44 3334333 3  67777  6666543 55554 45666666666555432         


Q ss_pred             ------------CCcccChHhhhcCCCccEEecCCCCccccchh-hccCcccceeecCCcccCCCcC-ccCCCCccccee
Q 047903          176 ------------SLKSLPSPLLSNLLNLYTLDMPFSYIDHTADE-FWKMNNLRHLNFGSITLPAHPR-KYCRSLENLNFI  241 (430)
Q Consensus       176 ------------~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp-~~l~~L~~L~~~  241 (430)
                                  .+..+....|.++.+|+.+.+..+ +..++.. +.++.+|+.+++..+ +.. ++ ..+.+...|...
T Consensus       137 ~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~-I~~~~F~~~~~L~~i  213 (394)
T 4fs7_A          137 KGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKI-IRDYCFAECILLENM  213 (394)
T ss_dssp             TTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCE-ECTTTTTTCTTCCBC
T ss_pred             ecccccccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceE-eCchhhcccccccee
Confidence                        112223334466667777766543 3344433 566666776666544 222 33 222222222222


Q ss_pred             ecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCC---------CCCCceEEEE-------
Q 047903          242 SALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSES---------KMPTLSKIVL-------  305 (430)
Q Consensus       242 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~---------~~~~L~~L~l-------  305 (430)
                      ..........+......+|+.+.+....   ...-...+.....|+.+.+..+.         .+..++.+..       
T Consensus       214 ~~~~~~~~i~~~~~~~~~l~~i~ip~~~---~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~  290 (394)
T 4fs7_A          214 EFPNSLYYLGDFALSKTGVKNIIIPDSF---TELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE  290 (394)
T ss_dssp             CCCTTCCEECTTTTTTCCCCEEEECTTC---CEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECT
T ss_pred             ecCCCceEeehhhcccCCCceEEECCCc---eecccccccccccceeEEcCCCcceeeccccccccccceeccCceeecc
Confidence            2221111111112233556666554331   11111234455666666664310         0333333332       


Q ss_pred             -EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEc-CCccccccEeEEeecCCC
Q 047903          306 -VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMG-IGAMPKLECLIINPCAYL  383 (430)
Q Consensus       306 -~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~l  383 (430)
                       .+... .+|+.+.+.++ +...+       .   .....+++|+.+.+..  +++.+... -..+++|+.+.+..  .+
T Consensus       291 ~~F~~~-~~L~~i~l~~~-i~~I~-------~---~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l  354 (394)
T 4fs7_A          291 KTFYGC-SSLTEVKLLDS-VKFIG-------E---EAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SL  354 (394)
T ss_dssp             TTTTTC-TTCCEEEECTT-CCEEC-------T---TTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TC
T ss_pred             cccccc-ccccccccccc-cceec-------h---hhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cc
Confidence             12233 55666655433 11000       0   0123456777777753  34444221 12467788888764  36


Q ss_pred             CcCC-CCCCCCCCCCEEEEecCh
Q 047903          384 KKMP-EQPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       384 ~~lp-~~l~~l~~L~~L~l~~~~  405 (430)
                      +.++ ..+.++++|+.+++...-
T Consensus       355 ~~I~~~aF~~C~~L~~i~lp~~~  377 (394)
T 4fs7_A          355 RKIGANAFQGCINLKKVELPKRL  377 (394)
T ss_dssp             CEECTTTBTTCTTCCEEEEEGGG
T ss_pred             cEehHHHhhCCCCCCEEEECCCC
Confidence            6665 367888999999987543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.19  E-value=6.3e-07  Score=84.61  Aligned_cols=131  Identities=18%  Similarity=0.131  Sum_probs=61.0

Q ss_pred             hcCCCccEEecCCCCccccchhhccCcccceeecCCcccCCC-cC----ccCCCCcccceeecC---CCC---cchhhhc
Q 047903          186 SNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGSITLPAH-PR----KYCRSLENLNFISAL---HPC---CCTEDIL  254 (430)
Q Consensus       186 ~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~-lp----~~l~~L~~L~~~~~~---~~~---~~~~~~l  254 (430)
                      ..+++|+.|.+++|.-..+|. + .+++|++|++..|.+... +.    ..+++|+.|.+....   ...   ..+...+
T Consensus       169 ~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l  246 (362)
T 2ra8_A          169 DAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF  246 (362)
T ss_dssp             HTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred             hcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence            555566666665552112333 2 255566665555544321 00    245555555443211   000   0111112


Q ss_pred             --CCCCCCceEEEEccccccHHHHHHHh---cCCCCCCEEEEecCCCCCCceEEEE-----EcccccCCcceEEEEcccc
Q 047903          255 --GRLPNLRNLRIWGDLSYYQSLLSQSL---CTLTCLESLKLVSESKMPTLSKIVL-----VEYQFPPRLTHLSFSNTEL  324 (430)
Q Consensus       255 --~~l~~L~~L~l~~~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~~~~L~~L~l-----~~~~lp~~L~~L~L~~~~l  324 (430)
                        ..+++|+.|++.+|.  ........+   ..+++|+.|+|+.    +.+..-..     .+..+ ++|+.|++++|.+
T Consensus       247 ~~~~~p~Lr~L~L~~~~--i~~~~~~~la~a~~~~~L~~LdLs~----n~L~d~G~~~L~~~L~~l-~~L~~L~L~~n~i  319 (362)
T 2ra8_A          247 SKDRFPNLKWLGIVDAE--EQNVVVEMFLESDILPQLETMDISA----GVLTDEGARLLLDHVDKI-KHLKFINMKYNYL  319 (362)
T ss_dssp             CTTTCTTCCEEEEESCT--THHHHHHHHHHCSSGGGCSEEECCS----SCCBHHHHHHHHTTHHHH-TTCSEEECCSBBC
T ss_pred             hcCCCCCcCEEeCCCCC--CchHHHHHHHhCccCCCCCEEECCC----CCCChHHHHHHHhhcccC-CcceEEECCCCcC
Confidence              357889999998876  333222222   2456677777753    22222100     11234 6667777766654


Q ss_pred             C
Q 047903          325 M  325 (430)
Q Consensus       325 ~  325 (430)
                      .
T Consensus       320 ~  320 (362)
T 2ra8_A          320 S  320 (362)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.10  E-value=1.5e-06  Score=77.93  Aligned_cols=65  Identities=23%  Similarity=0.170  Sum_probs=47.6

Q ss_pred             ccccCCceeecCCCCCcccC---hHhhhcCCCccEEecCCCCccccchhhccCc--ccceeecCCcccCCCc
Q 047903          162 ENLFLLRYLKLNIPSLKSLP---SPLLSNLLNLYTLDMPFSYIDHTADEFWKMN--NLRHLNFGSITLPAHP  228 (430)
Q Consensus       162 ~~l~~L~~L~L~~~~i~~lp---~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~--~L~~L~l~~~~~~~~l  228 (430)
                      .++++|+.|+|++|.++.++   ..+ +.+++|+.|+|++|.+..+.. +..+.  +|++|++++|.+.+.+
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~-~~l~~L~~L~Ls~N~i~~~~~-l~~l~~l~L~~L~L~~Npl~~~~  236 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIV-QKAPNLKILNLSGNELKSERE-LDKIKGLKLEELWLDGNSLCDTF  236 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHH-HHSTTCCEEECTTSCCCSGGG-GGGGTTSCCSEEECTTSTTGGGC
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHH-hhCCCCCEEECCCCccCCchh-hhhcccCCcceEEccCCcCcccc
Confidence            45778888888888877653   444 788888888888888777633 44444  8888888888876533

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.99  E-value=7.9e-06  Score=68.10  Aligned_cols=30  Identities=13%  Similarity=0.221  Sum_probs=13.4

Q ss_pred             EEEecCCccccc-ccccccccCCceeecCCC
Q 047903          146 VLDLGSLVLIHY-LSGIENLFLLRYLKLNIP  175 (430)
Q Consensus       146 ~L~l~~~~l~~l-p~~~~~l~~L~~L~L~~~  175 (430)
                      .||+++|.++.. ...+.++++|+.|+|++|
T Consensus        65 ~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C   95 (176)
T 3e4g_A           65 AIDATDSCIMSIGFDHMEGLQYVEKIRLCKC   95 (176)
T ss_dssp             EEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred             EEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence            555555554411 133344444445554444

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.99  E-value=4.2e-06  Score=71.12  Aligned_cols=110  Identities=12%  Similarity=0.105  Sum_probs=63.2

Q ss_pred             cCcceEEEEEecCC-ccc-----ccccccccccCCceeecCCCCCcc-----cChHhhhcCCCccEEecCCCCccc----
Q 047903          139 DSHMHSLVLDLGSL-VLI-----HYLSGIENLFLLRYLKLNIPSLKS-----LPSPLLSNLLNLYTLDMPFSYIDH----  203 (430)
Q Consensus       139 ~~~L~~L~L~l~~~-~l~-----~lp~~~~~l~~L~~L~L~~~~i~~-----lp~~i~~~L~~L~~L~L~~~~l~~----  203 (430)
                      .+.|+  .|++++| .+.     .+...+...++|++|+|++|.+..     +...+ ...++|++|+|++|.+..    
T Consensus        35 ~~~L~--~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L-~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           35 DPDLE--EVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML-KVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             CTTCC--EEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHH-HHCSSCCEEECCSSCCCHHHHH
T ss_pred             CCCCC--EEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHH-HhCCCcCEEECcCCcCCHHHHH
Confidence            45556  6677776 554     233445556677777777777652     33334 556677777777776653    


Q ss_pred             -cchhhccCcccceeec--CCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903          204 -TADEFWKMNNLRHLNF--GSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL  269 (430)
Q Consensus       204 -lp~~i~~L~~L~~L~l--~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  269 (430)
                       +...+...++|++|++  ++|.+...                  ....+..++...++|++|++++|.
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~------------------g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNN------------------VEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHH------------------HHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHH------------------HHHHHHHHHHhCCCcCEEeccCCC
Confidence             3444566666777777  55665430                  000111114555677777777765

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.94  E-value=4.4e-06  Score=71.01  Aligned_cols=117  Identities=17%  Similarity=0.023  Sum_probs=77.4

Q ss_pred             ccccccccCCceeecCCC-CCcc-----cChHhhhcCCCccEEecCCCCccc-----cchhhccCcccceeecCCcccCC
Q 047903          158 LSGIENLFLLRYLKLNIP-SLKS-----LPSPLLSNLLNLYTLDMPFSYIDH-----TADEFWKMNNLRHLNFGSITLPA  226 (430)
Q Consensus       158 p~~~~~l~~L~~L~L~~~-~i~~-----lp~~i~~~L~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~~~  226 (430)
                      ...+...+.|++|+|++| .+..     +...+ ...++|++|+|++|.+..     +...+...++|++|+|++|.+..
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L-~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEAL-KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHH-TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHH-HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            345667788999999998 7762     44555 778889999999997763     44556677889999998888765


Q ss_pred             CcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEE--Ecccc--ccHHHHHHHhcCCCCCCEEEEec
Q 047903          227 HPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRI--WGDLS--YYQSLLSQSLCTLTCLESLKLVS  293 (430)
Q Consensus       227 ~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l--~~~~~--~~~~~~~~~l~~l~~L~~L~l~~  293 (430)
                      .                 ........ +...++|++|++  .++.-  .....+...+...++|+.|++++
T Consensus       108 ~-----------------g~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~  160 (185)
T 1io0_A          108 S-----------------GILALVEA-LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  160 (185)
T ss_dssp             H-----------------HHHHHHHG-GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             H-----------------HHHHHHHH-HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccC
Confidence            0                 00012223 666778899999  66651  12223445555566677777654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.90  E-value=4.7e-06  Score=78.62  Aligned_cols=171  Identities=16%  Similarity=0.124  Sum_probs=105.2

Q ss_pred             CCCeeEEEEeecCCCc---------cccccc--cCcceEEEEEecCCccc----------ccccccccccCCceeecCCC
Q 047903          117 RKNVKRINVFEKQSDF---------AHLDDY--DSHMHSLVLDLGSLVLI----------HYLSGIENLFLLRYLKLNIP  175 (430)
Q Consensus       117 ~~~~r~L~l~~~~~~~---------~~~~~~--~~~L~~L~L~l~~~~l~----------~lp~~~~~l~~L~~L~L~~~  175 (430)
                      +.+++.|.+. .+...         .+.+++  +++|+  .|.+.+....          .+...+..+++|+.|+++++
T Consensus       106 ~~~v~~L~lg-~~~~~~~~~~~~~~~L~~s~~~l~~L~--~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~  182 (362)
T 2ra8_A          106 LPSLKQITIG-XWGYEGEDCSDIADGIVENKEKFAHFE--GLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGT  182 (362)
T ss_dssp             GGGCSEEEEC-CCCSSSCCSHHHHHHHHTTHHHHTTCS--EEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECC
T ss_pred             chhcceEEEc-ccccCCCcHHHHHHHHHHhhhhcchhh--heeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCC
Confidence            4457788777 43321         012223  68899  5555443221          24455677899999999987


Q ss_pred             CCcccChHhhhcCCCccEEecCCCCcccc-chhhc--cCcccceeecCC--cccCCC--c-------C-ccCCCCcccce
Q 047903          176 SLKSLPSPLLSNLLNLYTLDMPFSYIDHT-ADEFW--KMNNLRHLNFGS--ITLPAH--P-------R-KYCRSLENLNF  240 (430)
Q Consensus       176 ~i~~lp~~i~~~L~~L~~L~L~~~~l~~l-p~~i~--~L~~L~~L~l~~--~~~~~~--l-------p-~~l~~L~~L~~  240 (430)
                      .-..+|. + . +++|++|++..|.+..- ...+.  .+++|++|+|+.  +...+.  +       . ..+++|+.|.+
T Consensus       183 ~~l~l~~-~-~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L  259 (362)
T 2ra8_A          183 NNLSIGK-K-P-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGI  259 (362)
T ss_dssp             BTCBCCS-C-B-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEE
T ss_pred             CCceecc-c-c-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeC
Confidence            4234554 4 4 89999999998876532 12233  789999999863  221111  1       1 45788999988


Q ss_pred             eecCCCCcchhhh--cCCCCCCceEEEEcccccc--HHHHHHHhcCCCCCCEEEEec
Q 047903          241 ISALHPCCCTEDI--LGRLPNLRNLRIWGDLSYY--QSLLSQSLCTLTCLESLKLVS  293 (430)
Q Consensus       241 ~~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~--~~~~~~~l~~l~~L~~L~l~~  293 (430)
                      .++..........  ...+++|++|+++.|.-..  ...++..+..+++|+.|+++.
T Consensus       260 ~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~  316 (362)
T 2ra8_A          260 VDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY  316 (362)
T ss_dssp             ESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred             CCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCC
Confidence            7766432222220  3468899999998886111  123344445678999999975

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.84  E-value=1.8e-05  Score=65.86  Aligned_cols=91  Identities=12%  Similarity=0.147  Sum_probs=64.2

Q ss_pred             ccccccccccCCceeecCCCCCccc-ChHhhhcCCCccEEecCCC-Cccccc-hhhccC----cccceeecCCcc-cCCC
Q 047903          156 HYLSGIENLFLLRYLKLNIPSLKSL-PSPLLSNLLNLYTLDMPFS-YIDHTA-DEFWKM----NNLRHLNFGSIT-LPAH  227 (430)
Q Consensus       156 ~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~~L~~L~~L~L~~~-~l~~lp-~~i~~L----~~L~~L~l~~~~-~~~~  227 (430)
                      .+|.....-.+|+.|++++|.|+.. -..+ .++++|++|+|++| .++.-- ..+..+    ++|++|++++|. ++. 
T Consensus        52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD-  129 (176)
T 3e4g_A           52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD-  129 (176)
T ss_dssp             GSCCCSTTCCCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH-
T ss_pred             cCCcccCCCceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH-
Confidence            3454333335789999999988743 2446 88999999999998 676422 225543    468888888875 544 


Q ss_pred             cCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903          228 PRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL  269 (430)
Q Consensus       228 lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  269 (430)
                                          ..+.. +..+++|++|++++|.
T Consensus       130 --------------------~Gl~~-L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          130 --------------------KGIIA-LHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             --------------------HHHHH-GGGCTTCCEEEEESCT
T ss_pred             --------------------HHHHH-HhcCCCCCEEECCCCC
Confidence                                56666 7788999999999986

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.82  E-value=2.1e-05  Score=70.52  Aligned_cols=76  Identities=20%  Similarity=0.075  Sum_probs=61.5

Q ss_pred             cCcceEEEEEecCCcccccc---cccccccCCceeecCCCCCcccChHhhhcCC--CccEEecCCCCcc-ccc-------
Q 047903          139 DSHMHSLVLDLGSLVLIHYL---SGIENLFLLRYLKLNIPSLKSLPSPLLSNLL--NLYTLDMPFSYID-HTA-------  205 (430)
Q Consensus       139 ~~~L~~L~L~l~~~~l~~lp---~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~--~L~~L~L~~~~l~-~lp-------  205 (430)
                      +++|+  .|+|++|.++.++   ..++.+++|++|+|++|.++.+ .++ ..+.  +|++|+|++|.+. .+|       
T Consensus       169 l~~L~--~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l-~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          169 IPELL--SLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-REL-DKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             CTTCC--EEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGG-GGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             CCCCC--EEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhh-hhcccCCcceEEccCCcCccccCcchhHHH
Confidence            67888  9999999988554   5667899999999999999987 345 5555  9999999999876 344       


Q ss_pred             hhhccCcccceee
Q 047903          206 DEFWKMNNLRHLN  218 (430)
Q Consensus       206 ~~i~~L~~L~~L~  218 (430)
                      ..+..+++|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            2367889999884

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.75  E-value=9.4e-05  Score=70.73  Aligned_cols=56  Identities=13%  Similarity=0.052  Sum_probs=34.3

Q ss_pred             CCCcccEEEEeeCCCCCceEEc-CCccccccEeEEeecCCCCcCC-CCCCCCCCCCEEEEec
Q 047903          344 GFPNLKVLHLKSMLWLEEWTMG-IGAMPKLECLIINPCAYLKKMP-EQPWCIKSLNKFNCWW  403 (430)
Q Consensus       344 ~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~  403 (430)
                      .+.+|+.+.+.+  +++.+... ...+++|+.+.+.+  .++.++ ..+.++++|+.+.+..
T Consensus       295 ~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~  352 (394)
T 4fs7_A          295 GCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL  352 (394)
T ss_dssp             TCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT
T ss_pred             cccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc
Confidence            345677777653  34444221 12457788888753  466665 4577888899887743

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.44  E-value=0.0041  Score=59.18  Aligned_cols=109  Identities=10%  Similarity=0.046  Sum_probs=70.6

Q ss_pred             cCCCCCCCC-CCeeEEEEeecCCCccccccc--cCcceEEEEEecCCc---ccccc-cccccccCCceeecCCCCCcccC
Q 047903          109 FGDPKGKSR-KNVKRINVFEKQSDFAHLDDY--DSHMHSLVLDLGSLV---LIHYL-SGIENLFLLRYLKLNIPSLKSLP  181 (430)
Q Consensus       109 ~~~~~~~~~-~~~r~L~l~~~~~~~~~~~~~--~~~L~~L~L~l~~~~---l~~lp-~~~~~l~~L~~L~L~~~~i~~lp  181 (430)
                      ++...+..- ..++.+.+. +.....-..++  +.+|+  .+.+..+.   ++.+. .+|..+.+|+.+.+..+ ++.++
T Consensus        54 Ig~~aF~~~~~~L~sI~iP-~svt~Ig~~AF~~C~~L~--~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~  129 (394)
T 4gt6_A           54 IGDRVFCNYKYVLTSVQIP-DTVTEIGSNAFYNCTSLK--RVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEID  129 (394)
T ss_dssp             ECTTTTTTCCSCCCEEEEC-TTCCEECTTTTTTCTTCC--EEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred             cCHhhccCCCCcCEEEEEC-CCeeEEhHHHhhCCccCc--eEeecCCCCCeeeEechhhchhcccceeeccCCc-cceeh
Confidence            566666543 357888887 54333223334  77888  66666543   55665 46778888888877654 67777


Q ss_pred             hHhhhcCCCccEEecCCCCccccchh-hccCcccceeecCCc
Q 047903          182 SPLLSNLLNLYTLDMPFSYIDHTADE-FWKMNNLRHLNFGSI  222 (430)
Q Consensus       182 ~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~  222 (430)
                      ...|.++.+|+.+.+..+ +..++.. +..+.+|+.+.+..+
T Consensus       130 ~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~  170 (394)
T 4gt6_A          130 SEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS  170 (394)
T ss_dssp             TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT
T ss_pred             hhhhhhhcccccccccce-eeeecccceecccccccccccce
Confidence            766788888888888643 4445443 667777777766543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.13  E-value=0.00065  Score=53.71  Aligned_cols=54  Identities=24%  Similarity=0.183  Sum_probs=43.2

Q ss_pred             EEEecCCccc--ccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCc
Q 047903          146 VLDLGSLVLI--HYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYI  201 (430)
Q Consensus       146 ~L~l~~~~l~--~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l  201 (430)
                      +++.+++.++  .+|..+.  .+|++|+|++|+|+.+|..+|..+++|++|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            6777888887  8886543  3688899999999999888778899999999988854

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.68  E-value=0.0017  Score=51.24  Aligned_cols=56  Identities=14%  Similarity=0.170  Sum_probs=47.6

Q ss_pred             ceeecCCCCCc--ccChHhhhcCCCccEEecCCCCccccchh-hccCcccceeecCCcccCC
Q 047903          168 RYLKLNIPSLK--SLPSPLLSNLLNLYTLDMPFSYIDHTADE-FWKMNNLRHLNFGSITLPA  226 (430)
Q Consensus       168 ~~L~L~~~~i~--~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~  226 (430)
                      ..++-++++++  .+|..+   -.+|++|+|++|.|+.+|.+ +..+++|++|+|++|.+.-
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             CEEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            47888888898  999655   45799999999999999876 7889999999999997653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.25  E-value=0.014  Score=55.38  Aligned_cols=124  Identities=15%  Similarity=0.135  Sum_probs=72.9

Q ss_pred             cccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchh-hccCcccceeecCCcccCCCcC-ccCCCCc
Q 047903          159 SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADE-FWKMNNLRHLNFGSITLPAHPR-KYCRSLE  236 (430)
Q Consensus       159 ~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp-~~l~~L~  236 (430)
                      ..|.++..|+.+.+..+ +..++...|.++.+|+.+.+. +.++.++.. |.++.+|+.+++..+ +.. +. ..+.+..
T Consensus       259 ~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~-I~~~aF~~C~  334 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQ-ILDDAFAGCE  334 (394)
T ss_dssp             TTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCE-ECTTTTTTCT
T ss_pred             ceeeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccE-ehHhHhhCCC
Confidence            45677777888877654 445666666888888888875 356667654 777788888877643 333 44 3333333


Q ss_pred             ccceeecCCCC--cchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEe
Q 047903          237 NLNFISALHPC--CCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLV  292 (430)
Q Consensus       237 ~L~~~~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~  292 (430)
                      .|.....+.+.  ..... |.++++|+.+.+.++.     .....+....+|+.+.+.
T Consensus       335 ~L~~i~ip~sv~~I~~~a-F~~C~~L~~i~~~~~~-----~~~~~~~~~~~L~~i~i~  386 (394)
T 4gt6_A          335 QLERIAIPSSVTKIPESA-FSNCTALNNIEYSGSR-----SQWNAISTDSGLQNLPVA  386 (394)
T ss_dssp             TCCEEEECTTCCBCCGGG-GTTCTTCCEEEESSCH-----HHHHTCBCCCCC------
T ss_pred             CCCEEEECcccCEEhHhH-hhCCCCCCEEEECCce-----eehhhhhccCCCCEEEeC
Confidence            33333333221  22334 8899999999987763     122456777888888875

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.70  E-value=0.047  Score=51.36  Aligned_cols=58  Identities=24%  Similarity=0.280  Sum_probs=25.2

Q ss_pred             cccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchh-hccCcccceeec
Q 047903          161 IENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADE-FWKMNNLRHLNF  219 (430)
Q Consensus       161 ~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l  219 (430)
                      |.++..|+.+.+.. .++.++...|.++.+|+.+.+.++.++.++.. |.++.+|+.+.+
T Consensus       259 F~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l  317 (379)
T 4h09_A          259 LQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL  317 (379)
T ss_dssp             TTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred             cceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEc
Confidence            33444444444432 24444444444444444444444444444332 444444444443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.59  E-value=0.046  Score=51.42  Aligned_cols=100  Identities=10%  Similarity=0.085  Sum_probs=71.6

Q ss_pred             CCCeeEEEEeecCCCccccccc---cCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCcc
Q 047903          117 RKNVKRINVFEKQSDFAHLDDY---DSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLY  192 (430)
Q Consensus       117 ~~~~r~L~l~~~~~~~~~~~~~---~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~  192 (430)
                      ...++.+.+. +.. ..+.+..   +..|+  .+.+.. .+..++ ..|.++.+|+.+.+.++.++.+++..|.++.+|+
T Consensus       239 ~~~L~~i~lp-~~v-~~I~~~aF~~~~~l~--~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~  313 (379)
T 4h09_A          239 MKALDEIAIP-KNV-TSIGSFLLQNCTALK--TLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS  313 (379)
T ss_dssp             CSSCCEEEEC-TTC-CEECTTTTTTCTTCC--EEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred             CccceEEEcC-CCc-cEeCccccceeehhc--cccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence            3445566665 332 2232222   55666  555543 355565 4788999999999999999999888889999999


Q ss_pred             EEecCCCCccccchh-hccCcccceeecCCc
Q 047903          193 TLDMPFSYIDHTADE-FWKMNNLRHLNFGSI  222 (430)
Q Consensus       193 ~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~  222 (430)
                      .+.+.. +++.++.. |.++.+|+.+.+..+
T Consensus       314 ~i~lp~-~l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          314 SVTLPT-ALKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             EEECCT-TCCEECTTTTTTCTTCCCCCCCTT
T ss_pred             EEEcCc-cccEEHHHHhhCCCCCCEEEECCc
Confidence            999975 47777654 889999999977543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.50  E-value=0.013  Score=49.59  Aligned_cols=41  Identities=20%  Similarity=0.121  Sum_probs=20.7

Q ss_pred             hcCCCccEEecCCCCcc-----ccchhhccCcccceeecCCcccCC
Q 047903          186 SNLLNLYTLDMPFSYID-----HTADEFWKMNNLRHLNFGSITLPA  226 (430)
Q Consensus       186 ~~L~~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~~~  226 (430)
                      ..-..|+.|+|++|.+.     .+.+.+..-+.|++|+|++|.+..
T Consensus        67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~  112 (197)
T 1pgv_A           67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP  112 (197)
T ss_dssp             TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence            44455555555555443     223334444556666665555543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=93.77  E-value=0.07  Score=45.03  Aligned_cols=81  Identities=7%  Similarity=0.126  Sum_probs=54.6

Q ss_pred             cCcceEEEEEecCC-ccc-----ccccccccccCCceeecCCCCCcc-----cChHhhhcCCCccEEecCCCCccc----
Q 047903          139 DSHMHSLVLDLGSL-VLI-----HYLSGIENLFLLRYLKLNIPSLKS-----LPSPLLSNLLNLYTLDMPFSYIDH----  203 (430)
Q Consensus       139 ~~~L~~L~L~l~~~-~l~-----~lp~~~~~l~~L~~L~L~~~~i~~-----lp~~i~~~L~~L~~L~L~~~~l~~----  203 (430)
                      -+.|+  .|+|+++ .+.     .+-..+..-+.|+.|+|++|++..     +-..+ ..-..|++|+|++|.|..    
T Consensus        40 n~~L~--~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL-~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           40 DTDLK--EVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELI-ETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             CSSCC--EEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHH-HHCSSCCEEECCSSBCCHHHHH
T ss_pred             CCCcc--EEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHH-hcCCccCeEecCCCcCCHHHHH
Confidence            34555  7777775 554     234556666788999999988772     33444 667889999999987763    


Q ss_pred             -cchhhccCcccceeecCCc
Q 047903          204 -TADEFWKMNNLRHLNFGSI  222 (430)
Q Consensus       204 -lp~~i~~L~~L~~L~l~~~  222 (430)
                       +-+.+..-+.|++|+|+++
T Consensus       117 ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHhhCCceeEEECCCC
Confidence             3344555566888887754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	430
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-04

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 38/242 (15%), Positives = 71/242 (29%), Gaps = 20/242 (8%)

Query: 167 LRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHT-ADEFWKMNNLRHLNFGSITLP 225
              L L    +  +      NL NL+TL +  + I       F  +  L  L      L 
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 226 AHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTC 285
             P K  ++L+ L            + +   L  +  + +  +      + + +   +  
Sbjct: 93  ELPEKMPKTLQELRV-HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 151

Query: 286 LESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGF 345
           L  +++         + I  +    PP LT L     ++ +   +             G 
Sbjct: 152 LSYIRIAD-------TNITTIPQGLPPSLTELHLDGNKITKVDAA----------SLKGL 194

Query: 346 PNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ 405
            NL  L L            +   P L  L +N    L K+P      K +         
Sbjct: 195 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN 253

Query: 406 LE 407
           + 
Sbjct: 254 IS 255

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	430
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.81
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.79
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.75
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.72
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.72
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.7
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.7
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.68
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.67
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.66
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.63
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.6
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.57
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.57
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.55
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.54
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.5
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.5
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.49
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.47
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.47
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.44
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.44
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.41
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.39
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.33
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.31
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.31
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.23
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.05
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.96
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.93
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.87
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.61
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.55
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.42
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.04
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.84
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.14
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.64
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.51
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.49

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.81  E-value=1.2e-19  Score=167.07  Aligned_cols=250  Identities=14%  Similarity=0.094  Sum_probs=172.5

Q ss_pred             cCCCccccccccCcceEEEEEecCCccccccc-ccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccch
Q 047903          128 KQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLS-GIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTAD  206 (430)
Q Consensus       128 ~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~  206 (430)
                      +.....+|..+.++++  +|++++|.++.+|+ +|.++++|++|++++|.+..+++..|.++++|++|++++|+++.+|.
T Consensus        19 ~~~L~~lP~~l~~~l~--~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~   96 (305)
T d1xkua_          19 DLGLEKVPKDLPPDTA--LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE   96 (305)
T ss_dssp             TSCCCSCCCSCCTTCC--EEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCS
T ss_pred             CCCCCccCCCCCCCCC--EEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCcc
Confidence            3345567777777788  88888888888875 68888888888888888888855444888888888888888888886


Q ss_pred             hhccCcccceeecCCcccCCCcC----ccCCCCcccceeecCC--CCcchhhhcCCCCCCceEEEEccccccHHHHHHHh
Q 047903          207 EFWKMNNLRHLNFGSITLPAHPR----KYCRSLENLNFISALH--PCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSL  280 (430)
Q Consensus       207 ~i~~L~~L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l  280 (430)
                      .  ....++.|++..|.+.. ++    .....+..+.......  ....... +..+++|+.+++.++.  .. .++.  
T Consensus        97 ~--~~~~l~~L~~~~n~l~~-l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~-~~~l~~L~~l~l~~n~--l~-~l~~--  167 (305)
T d1xkua_          97 K--MPKTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGA-FQGMKKLSYIRIADTN--IT-TIPQ--  167 (305)
T ss_dssp             S--CCTTCCEEECCSSCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTTG-GGGCTTCCEEECCSSC--CC-SCCS--
T ss_pred             c--hhhhhhhhhccccchhh-hhhhhhhccccccccccccccccccCCCccc-cccccccCccccccCC--cc-ccCc--
Confidence            4  34578888888888777 66    3333444443333221  1122334 6677888888887774  11 1111  


Q ss_pred             cCCCCCCEEEEecCCCCCCceEEEE-EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCC
Q 047903          281 CTLTCLESLKLVSESKMPTLSKIVL-VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWL  359 (430)
Q Consensus       281 ~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  359 (430)
                      ...++|+.|++.+    ........ .+..+ +.++.|++++|.+...+          ......+++|++|+++++ ++
T Consensus       168 ~~~~~L~~L~l~~----n~~~~~~~~~~~~~-~~l~~L~~s~n~l~~~~----------~~~~~~l~~L~~L~L~~N-~L  231 (305)
T d1xkua_         168 GLPPSLTELHLDG----NKITKVDAASLKGL-NNLAKLGLSFNSISAVD----------NGSLANTPHLRELHLNNN-KL  231 (305)
T ss_dssp             SCCTTCSEEECTT----SCCCEECTGGGTTC-TTCCEEECCSSCCCEEC----------TTTGGGSTTCCEEECCSS-CC
T ss_pred             ccCCccCEEECCC----CcCCCCChhHhhcc-ccccccccccccccccc----------cccccccccceeeecccc-cc
Confidence            2346777777764    11111111 45566 88999999999875432          011245789999999994 68


Q ss_pred             CceEEcCCccccccEeEEeecCCCCcCCC-------CCCCCCCCCEEEEecCh
Q 047903          360 EEWTMGIGAMPKLECLIINPCAYLKKMPE-------QPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       360 ~~~~~~~~~~~~L~~L~l~~c~~l~~lp~-------~l~~l~~L~~L~l~~~~  405 (430)
                      +.++.....+++|++|++++| +++.++.       ....+++|+.|+++++|
T Consensus       232 ~~lp~~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         232 VKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             SSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             cccccccccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCCc
Confidence            888766778999999999996 5888754       23457899999999998

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=9e-19  Score=166.05  Aligned_cols=257  Identities=16%  Similarity=0.162  Sum_probs=158.0

Q ss_pred             CCCeeEEEEeecCCCccccccc--cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEE
Q 047903          117 RKNVKRINVFEKQSDFAHLDDY--DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTL  194 (430)
Q Consensus       117 ~~~~r~L~l~~~~~~~~~~~~~--~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L  194 (430)
                      ..+++.|.+. ++.+..+ +++  +++|+  +|++++|.++.+|. ++++++|++|++++|.++.+++ + +++++|+.|
T Consensus        43 l~~l~~L~l~-~~~I~~l-~gl~~L~nL~--~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~~i~~-l-~~l~~L~~L  115 (384)
T d2omza2          43 LDQVTTLQAD-RLGIKSI-DGVEYLNNLT--QINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-L-ANLTNLTGL  115 (384)
T ss_dssp             HTTCCEEECC-SSCCCCC-TTGGGCTTCC--EEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-G-TTCTTCCEE
T ss_pred             hCCCCEEECC-CCCCCCc-cccccCCCCC--EEeCcCCcCCCCcc-ccCCcccccccccccccccccc-c-ccccccccc
Confidence            4568899998 7777655 445  88899  99999999998875 8899999999999999988864 6 999999999


Q ss_pred             ecCCCCccccch----------------------------------------------------------------hhcc
Q 047903          195 DMPFSYIDHTAD----------------------------------------------------------------EFWK  210 (430)
Q Consensus       195 ~L~~~~l~~lp~----------------------------------------------------------------~i~~  210 (430)
                      +++++.++.++.                                                                ....
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (384)
T d2omza2         116 TLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK  195 (384)
T ss_dssp             ECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccccc
Confidence            998776554322                                                                1333


Q ss_pred             CcccceeecCCcccCCCcC-ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEE
Q 047903          211 MNNLRHLNFGSITLPAHPR-KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESL  289 (430)
Q Consensus       211 L~~L~~L~l~~~~~~~~lp-~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L  289 (430)
                      +++++.+++++|.+.+..| ...++|+.|.+.++..  ..+.. +..+++|+.|++.++.  ... + ..+..+++|+.|
T Consensus       196 l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l--~~~~~-l~~l~~L~~L~l~~n~--l~~-~-~~~~~~~~L~~L  268 (384)
T d2omza2         196 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQL--KDIGT-LASLTNLTDLDLANNQ--ISN-L-APLSGLTKLTEL  268 (384)
T ss_dssp             CTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCC--CCCGG-GGGCTTCSEEECCSSC--CCC-C-GGGTTCTTCSEE
T ss_pred             ccccceeeccCCccCCCCcccccCCCCEEECCCCCC--CCcch-hhcccccchhccccCc--cCC-C-CcccccccCCEe
Confidence            4555566666665555222 4455555555544432  22334 5566666666666654  111 1 124556666666


Q ss_pred             EEecCC--------CCCCceEEEE---------EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEE
Q 047903          290 KLVSES--------KMPTLSKIVL---------VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLH  352 (430)
Q Consensus       290 ~l~~~~--------~~~~L~~L~l---------~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~  352 (430)
                      ++++..        .++.++.+..         .+..+ ++++.|++++|.+.+.+            ....+++|++|+
T Consensus       269 ~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~-~~l~~L~ls~n~l~~l~------------~l~~l~~L~~L~  335 (384)
T d2omza2         269 KLGANQISNISPLAGLTALTNLELNENQLEDISPISNL-KNLTYLTLYFNNISDIS------------PVSSLTKLQRLF  335 (384)
T ss_dssp             ECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGC-TTCSEEECCSSCCSCCG------------GGGGCTTCCEEE
T ss_pred             eccCcccCCCCccccccccccccccccccccccccchh-cccCeEECCCCCCCCCc------------ccccCCCCCEEE
Confidence            665411        0223333332         12233 55666666666553321            134567777777


Q ss_pred             EeeCCCCCceEEcCCccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEecC
Q 047903          353 LKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWP  404 (430)
Q Consensus       353 l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~  404 (430)
                      ++++ .++.++ ..+.+++|++|++++| .++.++. +.++++|+.|+++++
T Consensus       336 L~~n-~l~~l~-~l~~l~~L~~L~l~~N-~l~~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         336 FANN-KVSDVS-SLANLTNINWLSAGHN-QISDLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCSS-CCCCCG-GGGGCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEECCCE
T ss_pred             CCCC-CCCCCh-hHcCCCCCCEEECCCC-cCCCChh-hccCCCCCEeeCCCC
Confidence            7764 455544 2445777777777765 4666653 667777777777654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.75  E-value=9e-20  Score=168.48  Aligned_cols=242  Identities=14%  Similarity=0.133  Sum_probs=117.0

Q ss_pred             CeeEEEEeecCCCc---cccccc--cCcceEEEEEecC-Cccc-ccccccccccCCceeecCCCCCcccChHhhhcCCCc
Q 047903          119 NVKRINVFEKQSDF---AHLDDY--DSHMHSLVLDLGS-LVLI-HYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNL  191 (430)
Q Consensus       119 ~~r~L~l~~~~~~~---~~~~~~--~~~L~~L~L~l~~-~~l~-~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L  191 (430)
                      +++.|++. ++...   .++..+  +++|+  +|++++ |.+. .+|..|+++++|++|++++|++..++...|.++.+|
T Consensus        51 ~v~~L~L~-~~~l~g~~~lp~~l~~L~~L~--~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L  127 (313)
T d1ogqa_          51 RVNNLDLS-GLNLPKPYPIPSSLANLPYLN--FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             CEEEEEEE-CCCCSSCEECCGGGGGCTTCS--EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred             EEEEEECC-CCCCCCCCCCChHHhcCcccc--ccccccccccccccccccccccccchhhhccccccccccccccchhhh
Confidence            45555555 33322   233444  45555  555554 3444 455555555555555555555554433323555555


Q ss_pred             cEEecCCCCc-cccchhhccCcccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCC-ceEEEEccc
Q 047903          192 YTLDMPFSYI-DHTADEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNL-RNLRIWGDL  269 (430)
Q Consensus       192 ~~L~L~~~~l-~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L-~~L~l~~~~  269 (430)
                      +++++++|.+ ..+|..++++++|+++++++|.+.+.+|                     .. +..+..+ +.+.+..+.
T Consensus       128 ~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip---------------------~~-~~~l~~l~~~l~~~~n~  185 (313)
T d1ogqa_         128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP---------------------DS-YGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC---------------------GG-GGCCCTTCCEEECCSSE
T ss_pred             cccccccccccccCchhhccCcccceeeccccccccccc---------------------cc-ccccccccccccccccc
Confidence            5555555522 2445555555555555555555444333                     33 3444333 344444433


Q ss_pred             cccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEEEcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCccc
Q 047903          270 SYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLK  349 (430)
Q Consensus       270 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~  349 (430)
                        .....+..+..+..+ .+++..   ......+..++..+ ++++.+++++|.+...+           .....+++|+
T Consensus       186 --l~~~~~~~~~~l~~~-~l~l~~---~~~~~~~~~~~~~~-~~l~~l~~~~~~l~~~~-----------~~~~~~~~L~  247 (313)
T d1ogqa_         186 --LTGKIPPTFANLNLA-FVDLSR---NMLEGDASVLFGSD-KNTQKIHLAKNSLAFDL-----------GKVGLSKNLN  247 (313)
T ss_dssp             --EEEECCGGGGGCCCS-EEECCS---SEEEECCGGGCCTT-SCCSEEECCSSEECCBG-----------GGCCCCTTCC
T ss_pred             --ccccccccccccccc-cccccc---cccccccccccccc-ccccccccccccccccc-----------cccccccccc
Confidence              222222223333222 333332   00000000023345 66677777766654322           1224466777


Q ss_pred             EEEEeeCCCCC-ceEEcCCccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903          350 VLHLKSMLWLE-EWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       350 ~L~l~~~~~l~-~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  405 (430)
                      .|++++ +++. .+|...+.+++|++|++++|..-..+|. +.++++|+.+++++++
T Consensus       248 ~L~Ls~-N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         248 GLDLRN-NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             EEECCS-SCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred             cccCcc-CeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence            777776 3343 4555566677777777777643335664 4566777777776665

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.72  E-value=3.6e-19  Score=164.32  Aligned_cols=225  Identities=13%  Similarity=0.076  Sum_probs=146.7

Q ss_pred             CCCCeeEEEEeecCCC-ccccccc--cCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCc-ccChHhhhcCCC
Q 047903          116 SRKNVKRINVFEKQSD-FAHLDDY--DSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLK-SLPSPLLSNLLN  190 (430)
Q Consensus       116 ~~~~~r~L~l~~~~~~-~~~~~~~--~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~-~lp~~i~~~L~~  190 (430)
                      ....+++|.+...+.. ..+|..+  +++|+  +|++++|.+..++ ..+..+.+|++++++.|.+. .+|..+ +++++
T Consensus        74 ~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~--~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l-~~l~~  150 (313)
T d1ogqa_          74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLH--YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPN  150 (313)
T ss_dssp             GCTTCSEEEEEEETTEESCCCGGGGGCTTCS--EEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG-GGCTT
T ss_pred             cCccccccccccccccccccccccccccccc--hhhhccccccccccccccchhhhcccccccccccccCchhh-ccCcc
Confidence            5678999999832443 3578777  89999  9999999998554 67889999999999999866 668888 99999


Q ss_pred             ccEEecCCCCcc-ccchhhccCccc-ceeecCCcccCCCcCccCCCCcccce--eecCCCCcchhhhcCCCCCCceEEEE
Q 047903          191 LYTLDMPFSYID-HTADEFWKMNNL-RHLNFGSITLPAHPRKYCRSLENLNF--ISALHPCCCTEDILGRLPNLRNLRIW  266 (430)
Q Consensus       191 L~~L~L~~~~l~-~lp~~i~~L~~L-~~L~l~~~~~~~~lp~~l~~L~~L~~--~~~~~~~~~~~~~l~~l~~L~~L~l~  266 (430)
                      |+++++++|.+. .+|..++.+.++ +.+++++|++.+..|..+.++..+.+  ..+......+.. ++.+++++.+++.
T Consensus       151 L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~-~~~~~~l~~l~~~  229 (313)
T d1ogqa_         151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVL-FGSDKNTQKIHLA  229 (313)
T ss_dssp             CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGG-CCTTSCCSEEECC
T ss_pred             cceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc
Confidence            999999999777 789989888886 88999999988744433333333321  111112233444 5666677777666


Q ss_pred             ccccccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEEEcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCC
Q 047903          267 GDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFP  346 (430)
Q Consensus       267 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~  346 (430)
                      ++.  .... +..+..+                            ++|+.|++++|++...          ++.....++
T Consensus       230 ~~~--l~~~-~~~~~~~----------------------------~~L~~L~Ls~N~l~g~----------iP~~l~~L~  268 (313)
T d1ogqa_         230 KNS--LAFD-LGKVGLS----------------------------KNLNGLDLRNNRIYGT----------LPQGLTQLK  268 (313)
T ss_dssp             SSE--ECCB-GGGCCCC----------------------------TTCCEEECCSSCCEEC----------CCGGGGGCT
T ss_pred             ccc--cccc-ccccccc----------------------------cccccccCccCeeccc----------CChHHhCCC
Confidence            654  1111 1223333                            5555566655554310          111234456


Q ss_pred             cccEEEEeeCCCCC-ceEEcCCccccccEeEEeecCCCCcCC
Q 047903          347 NLKVLHLKSMLWLE-EWTMGIGAMPKLECLIINPCAYLKKMP  387 (430)
Q Consensus       347 ~L~~L~l~~~~~l~-~~~~~~~~~~~L~~L~l~~c~~l~~lp  387 (430)
                      +|++|++++ +++. .+| ..+.+++|+.+++.+++.+...|
T Consensus       269 ~L~~L~Ls~-N~l~g~iP-~~~~L~~L~~l~l~~N~~l~g~p  308 (313)
T d1ogqa_         269 FLHSLNVSF-NNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             TCCEEECCS-SEEEEECC-CSTTGGGSCGGGTCSSSEEESTT
T ss_pred             CCCEEECcC-CcccccCC-CcccCCCCCHHHhCCCccccCCC
Confidence            666666665 3333 233 23556777777777766555443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=2.1e-17  Score=156.54  Aligned_cols=250  Identities=18%  Similarity=0.196  Sum_probs=165.3

Q ss_pred             cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceee
Q 047903          139 DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLN  218 (430)
Q Consensus       139 ~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~  218 (430)
                      +.+++  .|+++++.++.+ +.+..+++|++|++++|+++.+|+ + +++++|++|++++|.+..++. ++++++|+.|+
T Consensus        43 l~~l~--~L~l~~~~I~~l-~gl~~L~nL~~L~Ls~N~l~~l~~-l-~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~L~  116 (384)
T d2omza2          43 LDQVT--TLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITP-L-KNLTKLVDILMNNNQIADITP-LANLTNLTGLT  116 (384)
T ss_dssp             HTTCC--EEECCSSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG-G-TTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred             hCCCC--EEECCCCCCCCc-cccccCCCCCEEeCcCCcCCCCcc-c-cCCcccccccccccccccccc-ccccccccccc
Confidence            66788  999999999887 468899999999999999999975 7 999999999999999998876 89999999999


Q ss_pred             cCCcccCCCcC--ccCCCCcccceee----------------------------------------cC-CCCcchhhhcC
Q 047903          219 FGSITLPAHPR--KYCRSLENLNFIS----------------------------------------AL-HPCCCTEDILG  255 (430)
Q Consensus       219 l~~~~~~~~lp--~~l~~L~~L~~~~----------------------------------------~~-~~~~~~~~~l~  255 (430)
                      ++++.+.+ ++  .....+..+....                                        .. ........ ..
T Consensus       117 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  194 (384)
T d2omza2         117 LFNNQITD-IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV-LA  194 (384)
T ss_dssp             CCSSCCCC-CGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG-GG
T ss_pred             cccccccc-cccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccc-cc
Confidence            99988876 32  1111111111100                                        00 00011122 34


Q ss_pred             CCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCC--------CCCCceEEEE---------EcccccCCcceEE
Q 047903          256 RLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSES--------KMPTLSKIVL---------VEYQFPPRLTHLS  318 (430)
Q Consensus       256 ~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~--------~~~~L~~L~l---------~~~~lp~~L~~L~  318 (430)
                      .+++++.+.+.++.  .....  .....++|+.|+++++.        .+++++.+++         .+..+ ++|++|+
T Consensus       195 ~l~~~~~l~l~~n~--i~~~~--~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~~L~~L~  269 (384)
T d2omza2         195 KLTNLESLIATNNQ--ISDIT--PLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGL-TKLTELK  269 (384)
T ss_dssp             GCTTCSEEECCSSC--CCCCG--GGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTC-TTCSEEE
T ss_pred             cccccceeeccCCc--cCCCC--cccccCCCCEEECCCCCCCCcchhhcccccchhccccCccCCCCccccc-ccCCEee
Confidence            45566666666554  11111  12344566666665411        0345555544         23455 7788888


Q ss_pred             EEccccCCcccc-cccCCCeE---------EEcCCCCCcccEEEEeeCCCCCceEEcCCccccccEeEEeecCCCCcCCC
Q 047903          319 FSNTELMEDPKS-RASSSRKL---------TCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPE  388 (430)
Q Consensus       319 L~~~~l~~~~~~-~~~~~~~~---------~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~  388 (430)
                      ++++.+...+.. .......+         ......+++++.|++++ +++..++ ....+++|++|++++| .++.++ 
T Consensus       270 l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~-n~l~~l~-~l~~l~~L~~L~L~~n-~l~~l~-  345 (384)
T d2omza2         270 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF-NNISDIS-PVSSLTKLQRLFFANN-KVSDVS-  345 (384)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCS-SCCSCCG-GGGGCTTCCEEECCSS-CCCCCG-
T ss_pred             ccCcccCCCCccccccccccccccccccccccccchhcccCeEECCC-CCCCCCc-ccccCCCCCEEECCCC-CCCCCh-
Confidence            888776653320 00000000         11235578899999987 4566654 2467999999999998 588876 


Q ss_pred             CCCCCCCCCEEEEecCh
Q 047903          389 QPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       389 ~l~~l~~L~~L~l~~~~  405 (430)
                      .+.++++|++|++++|+
T Consensus       346 ~l~~l~~L~~L~l~~N~  362 (384)
T d2omza2         346 SLANLTNINWLSAGHNQ  362 (384)
T ss_dssp             GGGGCTTCCEEECCSSC
T ss_pred             hHcCCCCCCEEECCCCc
Confidence            58899999999999987

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.70  E-value=2.1e-17  Score=151.74  Aligned_cols=239  Identities=18%  Similarity=0.182  Sum_probs=175.9

Q ss_pred             CCCCeeEEEEeecCCCcccccc-c--cCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCc
Q 047903          116 SRKNVKRINVFEKQSDFAHLDD-Y--DSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNL  191 (430)
Q Consensus       116 ~~~~~r~L~l~~~~~~~~~~~~-~--~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L  191 (430)
                      .+..+++|.+. ++.+..+++. +  +++|+  +|++++|.+..++ ..|.++++|++|++++|+++.+|...   ...+
T Consensus        29 l~~~l~~L~Ls-~N~i~~l~~~~f~~l~~L~--~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~---~~~l  102 (305)
T d1xkua_          29 LPPDTALLDLQ-NNKITEIKDGDFKNLKNLH--TLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM---PKTL  102 (305)
T ss_dssp             CCTTCCEEECC-SSCCCCBCTTTTTTCTTCC--EEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC---CTTC
T ss_pred             CCCCCCEEECc-CCcCCCcChhHhhcccccc--ccccccccccccchhhhhCCCccCEecccCCccCcCccch---hhhh
Confidence            35789999999 8888778764 4  78888  9999999999774 67999999999999999999998754   5688


Q ss_pred             cEEecCCCCccccchh-hccCcccceeecCCcccCCC--cCccCCCCcccceeecCCCC-cchhhhcCCCCCCceEEEEc
Q 047903          192 YTLDMPFSYIDHTADE-FWKMNNLRHLNFGSITLPAH--PRKYCRSLENLNFISALHPC-CCTEDILGRLPNLRNLRIWG  267 (430)
Q Consensus       192 ~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~--lp~~l~~L~~L~~~~~~~~~-~~~~~~l~~l~~L~~L~l~~  267 (430)
                      +.|++.+|.+..++.. +.....+..++...+.....  .+..+..++.|......... ....  ...+++|++|++.+
T Consensus       103 ~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~--~~~~~~L~~L~l~~  180 (305)
T d1xkua_         103 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP--QGLPPSLTELHLDG  180 (305)
T ss_dssp             CEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC--SSCCTTCSEEECTT
T ss_pred             hhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccC--cccCCccCEEECCC
Confidence            9999999999888765 66777888888877755441  12344444444444443211 1121  23468899999988


Q ss_pred             cccccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEE-EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCC
Q 047903          268 DLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVL-VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFP  346 (430)
Q Consensus       268 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~  346 (430)
                      +.  .....+..+..+++++.|++++    ..+..+.. ++..+ ++|++|+|++|.+...|           .....++
T Consensus       181 n~--~~~~~~~~~~~~~~l~~L~~s~----n~l~~~~~~~~~~l-~~L~~L~L~~N~L~~lp-----------~~l~~l~  242 (305)
T d1xkua_         181 NK--ITKVDAASLKGLNNLAKLGLSF----NSISAVDNGSLANT-PHLRELHLNNNKLVKVP-----------GGLADHK  242 (305)
T ss_dssp             SC--CCEECTGGGTTCTTCCEEECCS----SCCCEECTTTGGGS-TTCCEEECCSSCCSSCC-----------TTTTTCS
T ss_pred             Cc--CCCCChhHhhcccccccccccc----cccccccccccccc-ccceeeecccccccccc-----------ccccccc
Confidence            86  4444456788889999999884    45555533 56778 99999999999886543           2245789


Q ss_pred             cccEEEEeeCCCCCceEEc-------CCccccccEeEEeecC
Q 047903          347 NLKVLHLKSMLWLEEWTMG-------IGAMPKLECLIINPCA  381 (430)
Q Consensus       347 ~L~~L~l~~~~~l~~~~~~-------~~~~~~L~~L~l~~c~  381 (430)
                      +|+.|++++ ++++.++..       ....++|+.|++.+++
T Consensus       243 ~L~~L~Ls~-N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         243 YIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             SCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             CCCEEECCC-CccCccChhhccCcchhcccCCCCEEECCCCc
Confidence            999999998 467766321       1246789999999987

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.9e-17  Score=148.95  Aligned_cols=192  Identities=17%  Similarity=0.079  Sum_probs=115.6

Q ss_pred             EEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceeecCCcccC
Q 047903          146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGSITLP  225 (430)
Q Consensus       146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~  225 (430)
                      .++.+++.++.+|+.+.  +++++|+|++|.++.+|...|.++++|++|+|++|+++.+|. ++.+++|++|++++|.+.
T Consensus        14 ~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N~l~   90 (266)
T d1p9ag_          14 EVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQLQ   90 (266)
T ss_dssp             EEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCCS
T ss_pred             EEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-cccccccccccccccccc
Confidence            45777777777776654  467788888888887776555888888888888887777775 567788888888877766


Q ss_pred             CCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEE
Q 047903          226 AHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVL  305 (430)
Q Consensus       226 ~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l  305 (430)
                      . +|                     .. +..+++|+.|+++++.  .......                           
T Consensus        91 ~-~~---------------------~~-~~~l~~L~~L~l~~~~--~~~~~~~---------------------------  118 (266)
T d1p9ag_          91 S-LP---------------------LL-GQTLPALTVLDVSFNR--LTSLPLG---------------------------  118 (266)
T ss_dssp             S-CC---------------------CC-TTTCTTCCEEECCSSC--CCCCCSS---------------------------
T ss_pred             c-cc---------------------cc-cccccccccccccccc--cceeecc---------------------------
Confidence            5 22                     11 3445555555555543  1000000                           


Q ss_pred             EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEc-CCccccccEeEEeecCCCC
Q 047903          306 VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMG-IGAMPKLECLIINPCAYLK  384 (430)
Q Consensus       306 ~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~l~  384 (430)
                      .+..+ .+++.|++++|.+...+          ......+++|+.+++++ +++..++.. .+.+++|++|++++| .++
T Consensus       119 ~~~~l-~~l~~L~l~~n~l~~l~----------~~~~~~l~~l~~l~l~~-N~l~~~~~~~~~~l~~L~~L~Ls~N-~L~  185 (266)
T d1p9ag_         119 ALRGL-GELQELYLKGNELKTLP----------PGLLTPTPKLEKLSLAN-NNLTELPAGLLNGLENLDTLLLQEN-SLY  185 (266)
T ss_dssp             TTTTC-TTCCEEECTTSCCCCCC----------TTTTTTCTTCCEEECTT-SCCSCCCTTTTTTCTTCCEEECCSS-CCC
T ss_pred             ccccc-cccccccccccccceec----------cccccccccchhccccc-ccccccCccccccccccceeecccC-CCc
Confidence            11222 44455555554443221          00112345556666555 344444332 245777788888775 477


Q ss_pred             cCCCCCCCCCCCCEEEEecCh
Q 047903          385 KMPEQPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       385 ~lp~~l~~l~~L~~L~l~~~~  405 (430)
                      .+|.++..+++|+.|+++|+|
T Consensus       186 ~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         186 TIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             CCCTTTTTTCCCSEEECCSCC
T ss_pred             ccChhHCCCCCCCEEEecCCC
Confidence            787777777888888887755

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2.4e-17  Score=148.22  Aligned_cols=164  Identities=20%  Similarity=0.118  Sum_probs=119.2

Q ss_pred             eeEEEEeecCCCccccccccCcceEEEEEecCCcccccc-cccccccCCceeecCCCCCcccChHhhhcCCCccEEecCC
Q 047903          120 VKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPF  198 (430)
Q Consensus       120 ~r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~  198 (430)
                      ...++.. +.....+|+.+.++++  +|+|++|.++.+| ..|.++++|++|++++|+++.+|. + +.+++|++|++++
T Consensus        12 ~~~v~C~-~~~L~~iP~~lp~~l~--~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~-~~l~~L~~L~Ls~   86 (266)
T d1p9ag_          12 HLEVNCD-KRNLTALPPDLPKDTT--ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVLGTLDLSH   86 (266)
T ss_dssp             CCEEECT-TSCCSSCCSCCCTTCC--EEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTCCEEECCS
T ss_pred             CeEEEcc-CCCCCeeCcCcCcCCC--EEECcCCcCCCcCHHHhhcccccccccccccccccccc-c-ccccccccccccc
Confidence            3445555 5566678887778899  9999999999888 578999999999999999999874 4 8999999999999


Q ss_pred             CCccccchhhccCcccceeecCCcccCCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHH
Q 047903          199 SYIDHTADEFWKMNNLRHLNFGSITLPAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQS  274 (430)
Q Consensus       199 ~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  274 (430)
                      |+++..|..+.++++|++|++++|.+.. ++    ..+.+++.|.+..+......... +..+++|+.|++.++.  ...
T Consensus        87 N~l~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~l~~L~l~~n~l~~l~~~~-~~~l~~l~~l~l~~N~--l~~  162 (266)
T d1p9ag_          87 NQLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGL-LTPTPKLEKLSLANNN--LTE  162 (266)
T ss_dssp             SCCSSCCCCTTTCTTCCEEECCSSCCCC-CCSSTTTTCTTCCEEECTTSCCCCCCTTT-TTTCTTCCEEECTTSC--CSC
T ss_pred             ccccccccccccccccccccccccccce-eeccccccccccccccccccccceecccc-ccccccchhccccccc--ccc
Confidence            9999998889999999999999999887 55    34444444444433332222333 5667777777777764  222


Q ss_pred             HHHHHhcCCCCCCEEEEe
Q 047903          275 LLSQSLCTLTCLESLKLV  292 (430)
Q Consensus       275 ~~~~~l~~l~~L~~L~l~  292 (430)
                      ..+..+..+++|+.|+|+
T Consensus       163 ~~~~~~~~l~~L~~L~Ls  180 (266)
T d1p9ag_         163 LPAGLLNGLENLDTLLLQ  180 (266)
T ss_dssp             CCTTTTTTCTTCCEEECC
T ss_pred             cCccccccccccceeecc
Confidence            222334445555555554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.67  E-value=3e-16  Score=146.36  Aligned_cols=263  Identities=18%  Similarity=0.116  Sum_probs=152.6

Q ss_pred             CeeEEEEeecCCCccccccccCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCC
Q 047903          119 NVKRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPF  198 (430)
Q Consensus       119 ~~r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~  198 (430)
                      ++++|++. ++....+|+ ..++|+  +|++++|.++.+|..+   .+|+.|++++|+++.++. +   .+.|++|++++
T Consensus        39 ~l~~LdLs-~~~L~~lp~-~~~~L~--~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~~l~~-l---p~~L~~L~L~~  107 (353)
T d1jl5a_          39 QAHELELN-NLGLSSLPE-LPPHLE--SLVASCNSLTELPELP---QSLKSLLVDNNNLKALSD-L---PPLLEYLGVSN  107 (353)
T ss_dssp             TCSEEECT-TSCCSCCCS-CCTTCS--EEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCS-C---CTTCCEEECCS
T ss_pred             CCCEEEeC-CCCCCCCCC-CCCCCC--EEECCCCCCcccccch---hhhhhhhhhhcccchhhh-h---ccccccccccc
Confidence            36678887 776666664 467899  8899999999988764   468888999998887753 2   24689999999


Q ss_pred             CCccccchhhccCcccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccH-----
Q 047903          199 SYIDHTADEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQ-----  273 (430)
Q Consensus       199 ~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-----  273 (430)
                      |.+..+|. ++.+++|++|+++++.+.. .|.....+..+.......  ..... ++.++.++.|.+..+.....     
T Consensus       108 n~l~~lp~-~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~l~~~~~~~--~~~~~-l~~l~~l~~L~l~~n~~~~~~~~~~  182 (353)
T d1jl5a_         108 NQLEKLPE-LQNSSFLKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQL--EELPE-LQNLPFLTAIYADNNSLKKLPDLPL  182 (353)
T ss_dssp             SCCSSCCC-CTTCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCC--SSCCC-CTTCTTCCEEECCSSCCSSCCCCCT
T ss_pred             cccccccc-hhhhccceeeccccccccc-cccccccccchhhccccc--ccccc-ccccccceecccccccccccccccc
Confidence            99999986 6889999999999988876 553334444443332222  22233 45555666666554430000     


Q ss_pred             -----------HHHHHHhcCCCCCCEEEEecCCC------CCCceEEEE---Ec---ccccCCcceEEEEccccCCcc--
Q 047903          274 -----------SLLSQSLCTLTCLESLKLVSESK------MPTLSKIVL---VE---YQFPPRLTHLSFSNTELMEDP--  328 (430)
Q Consensus       274 -----------~~~~~~l~~l~~L~~L~l~~~~~------~~~L~~L~l---~~---~~lp~~L~~L~L~~~~l~~~~--  328 (430)
                                 ......+..++.|+.++++.+..      ..++..+.+   .+   ...++++...++..+......  
T Consensus       183 ~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l  262 (353)
T d1jl5a_         183 SLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSEL  262 (353)
T ss_dssp             TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                       00001123345555555554110      122222222   00   011123333333332221100  


Q ss_pred             -c---ccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEcCCccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEecC
Q 047903          329 -K---SRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWP  404 (430)
Q Consensus       329 -~---~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~  404 (430)
                       .   ........+......+++|++|+++++ ++..++   ..+++|++|++++| .++++|..   +++|++|++++|
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N-~l~~lp---~~~~~L~~L~L~~N-~L~~l~~~---~~~L~~L~L~~N  334 (353)
T d1jl5a_         263 PPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELP---ALPPRLERLIASFN-HLAEVPEL---PQNLKQLHVEYN  334 (353)
T ss_dssp             CTTCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS
T ss_pred             cchhcccccccCccccccccCCCCCEEECCCC-ccCccc---cccCCCCEEECCCC-cCCccccc---cCCCCEEECcCC
Confidence             0   000001111111244678999999874 566664   34788999998876 57788753   467888999888


Q ss_pred             h
Q 047903          405 Q  405 (430)
Q Consensus       405 ~  405 (430)
                      +
T Consensus       335 ~  335 (353)
T d1jl5a_         335 P  335 (353)
T ss_dssp             C
T ss_pred             c
Confidence            7

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.5e-17  Score=151.21  Aligned_cols=207  Identities=18%  Similarity=0.147  Sum_probs=145.0

Q ss_pred             cCCCccccccccCcceEEEEEecCCccccccc-ccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCC-Cccccc
Q 047903          128 KQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLS-GIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFS-YIDHTA  205 (430)
Q Consensus       128 ~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~-~l~~lp  205 (430)
                      +.....+|..+.+.++  +|+|++|.++.+|. .|.++++|++|++++|.++.++...|.++..++.++...+ .+..++
T Consensus        20 ~~~L~~iP~~ip~~~~--~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~   97 (284)
T d1ozna_          20 QQGLQAVPVGIPAASQ--RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD   97 (284)
T ss_dssp             SSCCSSCCTTCCTTCS--EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC
T ss_pred             CCCCCccCCCCCCCCC--EEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccccccccc
Confidence            4445567776777788  89999999998884 7899999999999999999887777788999999987655 777774


Q ss_pred             -hhhccCcccceeecCCcccCCCcC----ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHh
Q 047903          206 -DEFWKMNNLRHLNFGSITLPAHPR----KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSL  280 (430)
Q Consensus       206 -~~i~~L~~L~~L~l~~~~~~~~lp----~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l  280 (430)
                       ..+.++++|++|++++|.+.. ++    ....+|+.+.+..+......... +..+++|+.|++.++.  .....+..+
T Consensus        98 ~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~l~l~~N~l~~i~~~~-f~~~~~L~~L~l~~N~--l~~l~~~~f  173 (284)
T d1ozna_          98 PATFHGLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNALQALPDDT-FRDLGNLTHLFLHGNR--ISSVPERAF  173 (284)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSC--CCEECTTTT
T ss_pred             chhhcccccCCEEecCCccccc-ccccccchhcccchhhhccccccccChhH-hccccchhhcccccCc--ccccchhhh
Confidence             458899999999999998876 54    44555555555444433333344 7778888888888875  333334566


Q ss_pred             cCCCCCCEEEEecCCCCCCceEEEE-EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEee
Q 047903          281 CTLTCLESLKLVSESKMPTLSKIVL-VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKS  355 (430)
Q Consensus       281 ~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  355 (430)
                      ..+++|+.+.++.    .++..+.- ++..+ ++|++|++++|.+...+          ......+++|++|++++
T Consensus       174 ~~l~~L~~l~l~~----N~l~~i~~~~f~~l-~~L~~L~l~~N~i~~~~----------~~~~~~~~~L~~L~l~~  234 (284)
T d1ozna_         174 RGLHSLDRLLLHQ----NRVAHVHPHAFRDL-GRLMTLYLFANNLSALP----------TEALAPLRALQYLRLND  234 (284)
T ss_dssp             TTCTTCCEEECCS----SCCCEECTTTTTTC-TTCCEEECCSSCCSCCC----------HHHHTTCTTCCEEECCS
T ss_pred             ccccccchhhhhh----ccccccChhHhhhh-hhccccccccccccccc----------ccccccccccCEEEecC
Confidence            6777777777763    33443321 45666 77788888877765432          11134567777777765

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=9.4e-17  Score=145.76  Aligned_cols=217  Identities=17%  Similarity=0.119  Sum_probs=130.3

Q ss_pred             EEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchh-hccCcccceeecCCc-c
Q 047903          146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADE-FWKMNNLRHLNFGSI-T  223 (430)
Q Consensus       146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~-~  223 (430)
                      +++.++++++.+|..+.  +.+++|+|++|+|+++|+..|.++++|++|++++|.+..++.. +..+..+++++...+ .
T Consensus        15 ~v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EEECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEEcCCCCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            56677777888887654  4678888888888888766558888888888888888877654 566777777765433 3


Q ss_pred             cCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCCCCCceEE
Q 047903          224 LPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKI  303 (430)
Q Consensus       224 ~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L  303 (430)
                      +.. ++                    ... ++++++|++|++.++.  ........+....+|+.+++..    .+++.+
T Consensus        93 ~~~-l~--------------------~~~-~~~l~~L~~L~l~~n~--~~~~~~~~~~~~~~L~~l~l~~----N~l~~i  144 (284)
T d1ozna_          93 LRS-VD--------------------PAT-FHGLGRLHTLHLDRCG--LQELGPGLFRGLAALQYLYLQD----NALQAL  144 (284)
T ss_dssp             CCC-CC--------------------TTT-TTTCTTCCEEECTTSC--CCCCCTTTTTTCTTCCEEECCS----SCCCCC
T ss_pred             ccc-cc--------------------chh-hcccccCCEEecCCcc--cccccccccchhcccchhhhcc----cccccc
Confidence            333 33                    122 4444444444444443  1111122233344444444442    222222


Q ss_pred             EE-EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceE-EcCCccccccEeEEeecC
Q 047903          304 VL-VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWT-MGIGAMPKLECLIINPCA  381 (430)
Q Consensus       304 ~l-~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~c~  381 (430)
                      .- ++..+ ++|+.|++++|.+...+          .....++++|+.+.+.+ +++..+. ...+.+++|++|+++++.
T Consensus       145 ~~~~f~~~-~~L~~L~l~~N~l~~l~----------~~~f~~l~~L~~l~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~  212 (284)
T d1ozna_         145 PDDTFRDL-GNLTHLFLHGNRISSVP----------ERAFRGLHSLDRLLLHQ-NRVAHVHPHAFRDLGRLMTLYLFANN  212 (284)
T ss_dssp             CTTTTTTC-TTCCEEECCSSCCCEEC----------TTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             ChhHhccc-cchhhcccccCcccccc----------hhhhccccccchhhhhh-ccccccChhHhhhhhhcccccccccc
Confidence            11 23445 67777777777664321          01124567788888776 3444442 334567888999998865


Q ss_pred             CCCcCC-CCCCCCCCCCEEEEecCh
Q 047903          382 YLKKMP-EQPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       382 ~l~~lp-~~l~~l~~L~~L~l~~~~  405 (430)
                       +..+| ..+..+++|+.|+++++|
T Consensus       213 -i~~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         213 -LSALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             -CSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             -cccccccccccccccCEEEecCCC
Confidence             55554 567788899999998743

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=2.1e-15  Score=131.91  Aligned_cols=190  Identities=14%  Similarity=0.120  Sum_probs=107.8

Q ss_pred             cccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceeecCCcccCCCcCccCCCCcccce
Q 047903          161 IENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPRKYCRSLENLNF  240 (430)
Q Consensus       161 ~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~l~~L~~L~~  240 (430)
                      ++.+.+|++|++.+|++++++ .+ +++++|++|++++|.+..++. +.++++|+++++++|.+.. ++           
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l~-~l-~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~~-i~-----------  101 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVTTIE-GV-QYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN-VS-----------  101 (227)
T ss_dssp             HHHHHTCCEEECTTSCCCCCT-TG-GGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC-CG-----------
T ss_pred             HHHcCCcCEEECCCCCCCcch-hH-hcCCCCcEeecCCceeecccc-ccccccccccccccccccc-cc-----------
Confidence            345566666666666666663 35 666666666666666665543 5666666666666665544 33           


Q ss_pred             eecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEEEcccccCCcceEEEE
Q 047903          241 ISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVLVEYQFPPRLTHLSFS  320 (430)
Q Consensus       241 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~lp~~L~~L~L~  320 (430)
                                 . +..+++|+.+.+..+.....    ..+...+.++.+.+..    ..+.... .+... ++|+.|+++
T Consensus       102 -----------~-l~~l~~L~~l~l~~~~~~~~----~~~~~~~~~~~l~~~~----~~~~~~~-~~~~~-~~L~~L~l~  159 (227)
T d1h6ua2         102 -----------A-IAGLQSIKTLDLTSTQITDV----TPLAGLSNLQVLYLDL----NQITNIS-PLAGL-TNLQYLSIG  159 (227)
T ss_dssp             -----------G-GTTCTTCCEEECTTSCCCCC----GGGTTCTTCCEEECCS----SCCCCCG-GGGGC-TTCCEEECC
T ss_pred             -----------c-cccccccccccccccccccc----chhccccchhhhhchh----hhhchhh-hhccc-ccccccccc
Confidence                       2 33333334333333320000    1122233333333332    1111100 12344 677777777


Q ss_pred             ccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEcCCccccccEeEEeecCCCCcCCCCCCCCCCCCEEE
Q 047903          321 NTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFN  400 (430)
Q Consensus       321 ~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~  400 (430)
                      +|.+...+            ....+++|++|+++++ .++.++. .+.+++|++|++++| +++++|. +.++++|+.|+
T Consensus       160 ~n~~~~~~------------~l~~l~~L~~L~Ls~n-~l~~l~~-l~~l~~L~~L~Ls~N-~lt~i~~-l~~l~~L~~L~  223 (227)
T d1h6ua2         160 NAQVSDLT------------PLANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNN-QISDVSP-LANTSNLFIVT  223 (227)
T ss_dssp             SSCCCCCG------------GGTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTS-CCCBCGG-GTTCTTCCEEE
T ss_pred             ccccccch------------hhcccccceecccCCC-ccCCChh-hcCCCCCCEEECcCC-cCCCCcc-cccCCCCCEEE
Confidence            77654321            1356788888888873 5666542 456889999999987 5888874 78899999999


Q ss_pred             Eec
Q 047903          401 CWW  403 (430)
Q Consensus       401 l~~  403 (430)
                      +++
T Consensus       224 lsn  226 (227)
T d1h6ua2         224 LTN  226 (227)
T ss_dssp             EEE
T ss_pred             eeC
Confidence            874

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.57  E-value=1.2e-14  Score=135.16  Aligned_cols=239  Identities=19%  Similarity=0.088  Sum_probs=144.9

Q ss_pred             CcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceeec
Q 047903          140 SHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNF  219 (430)
Q Consensus       140 ~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l  219 (430)
                      .+++  +||++++.++.+|+.   .++|++|++++|+++++|..+    .+|+.|++++|.++.++. +  .+.|++|++
T Consensus        38 ~~l~--~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~~----~~L~~L~l~~n~l~~l~~-l--p~~L~~L~L  105 (353)
T d1jl5a_          38 RQAH--ELELNNLGLSSLPEL---PPHLESLVASCNSLTELPELP----QSLKSLLVDNNNLKALSD-L--PPLLEYLGV  105 (353)
T ss_dssp             HTCS--EEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCCC----TTCCEEECCSSCCSCCCS-C--CTTCCEEEC
T ss_pred             cCCC--EEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccch----hhhhhhhhhhcccchhhh-h--ccccccccc
Confidence            4677  999999999999974   468999999999999999644    578999999998887764 1  246999999


Q ss_pred             CCcccCCCcC--ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCC-
Q 047903          220 GSITLPAHPR--KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESK-  296 (430)
Q Consensus       220 ~~~~~~~~lp--~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-  296 (430)
                      ++|.+.. +|  +.+++|+.|....+... .   . ......+..+.+.....  .  ....+..++.++.+.+..... 
T Consensus       106 ~~n~l~~-lp~~~~l~~L~~L~l~~~~~~-~---~-~~~~~~l~~l~~~~~~~--~--~~~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         106 SNNQLEK-LPELQNSSFLKIIDVDNNSLK-K---L-PDLPPSLEFIAAGNNQL--E--ELPELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             CSSCCSS-CCCCTTCTTCCEEECCSSCCS-C---C-CCCCTTCCEEECCSSCC--S--SCCCCTTCTTCCEEECCSSCCS
T ss_pred             ccccccc-ccchhhhccceeecccccccc-c---c-ccccccccchhhccccc--c--ccccccccccceeccccccccc
Confidence            9999988 88  66777777766544321 1   1 22345566776665541  1  112345677788888765110 


Q ss_pred             -----CCCceEEEE---------EcccccCCcceEEEEccccCCcccccc------cCCCeEEEcCCCCCcccEEEEeeC
Q 047903          297 -----MPTLSKIVL---------VEYQFPPRLTHLSFSNTELMEDPKSRA------SSSRKLTCGSDGFPNLKVLHLKSM  356 (430)
Q Consensus       297 -----~~~L~~L~l---------~~~~lp~~L~~L~L~~~~l~~~~~~~~------~~~~~~~~~~~~~~~L~~L~l~~~  356 (430)
                           ....+.+..         .+..+ +.|+.+++++|.....+....      .............+++....+...
T Consensus       176 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l-~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~  254 (353)
T d1jl5a_         176 KLPDLPLSLESIVAGNNILEELPELQNL-PFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSEN  254 (353)
T ss_dssp             SCCCCCTTCCEEECCSSCCSSCCCCTTC-TTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS
T ss_pred             cccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                 111122221         23345 677888877776544331000      000000000011222333332210


Q ss_pred             --CCCC--------------ceEEcCCccccccEeEEeecCCCCcCCCCCCCCCCCCEEEEecCh
Q 047903          357 --LWLE--------------EWTMGIGAMPKLECLIINPCAYLKKMPEQPWCIKSLNKFNCWWPQ  405 (430)
Q Consensus       357 --~~l~--------------~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  405 (430)
                        ..+.              .+......+++|++|++++| +++.+|..   +++|+.|++++|.
T Consensus       255 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~---~~~L~~L~L~~N~  315 (353)
T d1jl5a_         255 IFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPAL---PPRLERLIASFNH  315 (353)
T ss_dssp             CCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSC
T ss_pred             cccccccccchhcccccccCccccccccCCCCCEEECCCC-ccCccccc---cCCCCEEECCCCc
Confidence              0011              01111234689999999997 58889864   5789999999876

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.57  E-value=4e-15  Score=130.15  Aligned_cols=121  Identities=17%  Similarity=0.140  Sum_probs=88.6

Q ss_pred             cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceee
Q 047903          139 DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLN  218 (430)
Q Consensus       139 ~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~  218 (430)
                      +.+|+  .|++.+|.++.++ .+..+++|++|++++|.++.+++ + .++++|+++++++|.++.++. +..+++|+.++
T Consensus        40 l~~L~--~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~-l-~~l~~l~~l~~~~n~~~~i~~-l~~l~~L~~l~  113 (227)
T d1h6ua2          40 LDGIT--TLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-L-KNLTKITELELSGNPLKNVSA-IAGLQSIKTLD  113 (227)
T ss_dssp             HHTCC--EEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-G-TTCCSCCEEECCSCCCSCCGG-GTTCTTCCEEE
T ss_pred             cCCcC--EEECCCCCCCcch-hHhcCCCCcEeecCCceeecccc-c-ccccccccccccccccccccc-ccccccccccc
Confidence            66777  8899999998874 68899999999999999988754 6 999999999999998888875 78899999999


Q ss_pred             cCCcccCCCcC--ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903          219 FGSITLPAHPR--KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL  269 (430)
Q Consensus       219 l~~~~~~~~lp--~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  269 (430)
                      ++++.... ++  ...+.+..+....+..  ..... +...++|+.|.+.++.
T Consensus       114 l~~~~~~~-~~~~~~~~~~~~l~~~~~~~--~~~~~-~~~~~~L~~L~l~~n~  162 (227)
T d1h6ua2         114 LTSTQITD-VTPLAGLSNLQVLYLDLNQI--TNISP-LAGLTNLQYLSIGNAQ  162 (227)
T ss_dssp             CTTSCCCC-CGGGTTCTTCCEEECCSSCC--CCCGG-GGGCTTCCEEECCSSC
T ss_pred             cccccccc-cchhccccchhhhhchhhhh--chhhh-hccccccccccccccc
Confidence            98888776 33  4444444444333222  22223 4555666666666553

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.55  E-value=5.5e-15  Score=127.54  Aligned_cols=138  Identities=19%  Similarity=0.180  Sum_probs=67.3

Q ss_pred             CeeEEEEeecCCCccccccc--cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEec
Q 047903          119 NVKRINVFEKQSDFAHLDDY--DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDM  196 (430)
Q Consensus       119 ~~r~L~l~~~~~~~~~~~~~--~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L  196 (430)
                      .++++.+. ++.+..+. ++  +++|+  .|++++|.++.++. ++.+++|++|++++|+++.+| .+ +++++|+.|++
T Consensus        47 ~L~~L~l~-~~~i~~l~-~l~~l~~L~--~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~l~-~l-~~l~~L~~L~l  119 (210)
T d1h6ta2          47 SIDQIIAN-NSDIKSVQ-GIQYLPNVT--KLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS-SL-KDLKKLKSLSL  119 (210)
T ss_dssp             TCCEEECT-TSCCCCCT-TGGGCTTCC--EEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG-GG-TTCTTCCEEEC
T ss_pred             CccEEECc-CCCCCCch-hHhhCCCCC--EEeCCCccccCccc-cccCccccccccccccccccc-cc-ccccccccccc
Confidence            35555555 44433222 22  55555  55555555555442 445555555555555555554 24 55555555555


Q ss_pred             CCCCccccchhhccCcccceeecCCcccCCCcC--ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEcc
Q 047903          197 PFSYIDHTADEFWKMNNLRHLNFGSITLPAHPR--KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGD  268 (430)
Q Consensus       197 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp--~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  268 (430)
                      ++|.+..++. +..+++++++++++|.+.. .+  ..+++|+.+.+.++..  ..+.. +.++++|++|++++|
T Consensus       120 ~~~~~~~~~~-l~~l~~l~~l~~~~n~l~~-~~~~~~l~~L~~l~l~~n~l--~~i~~-l~~l~~L~~L~Ls~N  188 (210)
T d1h6ta2         120 EHNGISDING-LVHLPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQI--SDIVP-LAGLTKLQNLYLSKN  188 (210)
T ss_dssp             TTSCCCCCGG-GGGCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCC--CCCGG-GTTCTTCCEEECCSS
T ss_pred             cccccccccc-ccccccccccccccccccc-cccccccccccccccccccc--ccccc-ccCCCCCCEEECCCC
Confidence            5555544443 4555555555555555544 32  3444444444333322  12233 444555555555544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.54  E-value=1.9e-14  Score=124.05  Aligned_cols=163  Identities=20%  Similarity=0.151  Sum_probs=131.1

Q ss_pred             cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceee
Q 047903          139 DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLN  218 (430)
Q Consensus       139 ~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~  218 (430)
                      +..++  .|++++|.++.++ .+..+++|++|++++|+++.+++ + +++++|++|++++|+++.+|. +.++++|+.|+
T Consensus        45 L~~L~--~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~~-~-~~l~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~  118 (210)
T d1h6ta2          45 LNSID--QIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-L-ANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS  118 (210)
T ss_dssp             HHTCC--EEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-G-TTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEE
T ss_pred             hcCcc--EEECcCCCCCCch-hHhhCCCCCEEeCCCccccCccc-c-ccCcccccccccccccccccc-ccccccccccc
Confidence            55667  8999999998775 47889999999999999999874 6 999999999999999999985 89999999999


Q ss_pred             cCCcccCCCcC--ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCC
Q 047903          219 FGSITLPAHPR--KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESK  296 (430)
Q Consensus       219 l~~~~~~~~lp--~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  296 (430)
                      +++|.+.. ++  ..+++++.+....+..  ..... +..+++|+.+++.++.  ... + ..+..+++|+.|++++   
T Consensus       119 l~~~~~~~-~~~l~~l~~l~~l~~~~n~l--~~~~~-~~~l~~L~~l~l~~n~--l~~-i-~~l~~l~~L~~L~Ls~---  187 (210)
T d1h6ta2         119 LEHNGISD-INGLVHLPQLESLYLGNNKI--TDITV-LSRLTKLDTLSLEDNQ--ISD-I-VPLAGLTKLQNLYLSK---  187 (210)
T ss_dssp             CTTSCCCC-CGGGGGCTTCCEEECCSSCC--CCCGG-GGGCTTCSEEECCSSC--CCC-C-GGGTTCTTCCEEECCS---
T ss_pred             cccccccc-cccccccccccccccccccc--ccccc-cccccccccccccccc--ccc-c-ccccCCCCCCEEECCC---
Confidence            99999877 66  6677777666655443  33445 6788999999999986  222 2 2378899999999985   


Q ss_pred             CCCceEEEEEcccccCCcceEEEEc
Q 047903          297 MPTLSKIVLVEYQFPPRLTHLSFSN  321 (430)
Q Consensus       297 ~~~L~~L~l~~~~lp~~L~~L~L~~  321 (430)
                       ..++.++ .+..+ ++|++|+|++
T Consensus       188 -N~i~~l~-~l~~l-~~L~~L~Ls~  209 (210)
T d1h6ta2         188 -NHISDLR-ALAGL-KNLDVLELFS  209 (210)
T ss_dssp             -SCCCBCG-GGTTC-TTCSEEEEEE
T ss_pred             -CCCCCCh-hhcCC-CCCCEEEccC
Confidence             4566554 56788 9999999975

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.50  E-value=6e-14  Score=119.83  Aligned_cols=140  Identities=21%  Similarity=0.196  Sum_probs=85.4

Q ss_pred             CCeeEEEEeecCCCccccccc--cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEe
Q 047903          118 KNVKRINVFEKQSDFAHLDDY--DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLD  195 (430)
Q Consensus       118 ~~~r~L~l~~~~~~~~~~~~~--~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~  195 (430)
                      .+++.|.+. ++.+..+. ++  +++|+  +|++++|.++.+++ ++++++|++|++++|.+..+|. + +++++|+.|+
T Consensus        40 ~~l~~L~l~-~~~i~~l~-~l~~l~nL~--~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~-l-~~l~~L~~L~  112 (199)
T d2omxa2          40 DQVTTLQAD-RLGIKSID-GVEYLNNLT--QINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-L-ANLTNLTGLT  112 (199)
T ss_dssp             TTCCEEECT-TSCCCCCT-TGGGCTTCC--EEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-G-TTCTTCSEEE
T ss_pred             cCCCEEECC-CCCCCCcc-ccccCCCcC--cCccccccccCccc-ccCCcccccccccccccccccc-c-cccccccccc
Confidence            456666666 55554332 23  66666  67777777666554 6667777777777776666653 4 6777777777


Q ss_pred             cCCCCccccchhhccCcccceeecCCcccCCCcC--ccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903          196 MPFSYIDHTADEFWKMNNLRHLNFGSITLPAHPR--KYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL  269 (430)
Q Consensus       196 L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp--~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  269 (430)
                      +++|.+..++. +..+++|+.|++++|.+.. +|  ..+++++.|...++..  ..+.. ++++++|++|+++++.
T Consensus       113 l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~~L~l~~n~l--~~l~~-l~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         113 LFNNQITDIDP-LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLNFSSNQV--TDLKP-LANLTTLERLDISSNK  183 (199)
T ss_dssp             CCSSCCCCCGG-GTTCTTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSSCC--CCCGG-GTTCTTCCEEECCSSC
T ss_pred             ccccccccccc-cchhhhhHHhhhhhhhhcc-cccccccccccccccccccc--cCCcc-ccCCCCCCEEECCCCC
Confidence            77665555443 5666777777777776655 55  5555555555544432  22334 6666666666666664

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.50  E-value=4e-14  Score=120.95  Aligned_cols=148  Identities=20%  Similarity=0.242  Sum_probs=84.5

Q ss_pred             cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceee
Q 047903          139 DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLN  218 (430)
Q Consensus       139 ~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~  218 (430)
                      +++++  .|++++|.++.++ .++.+++|++|++++|+++.+++ + +++++|++|++++|.+..+|. +.++++|++|+
T Consensus        39 l~~l~--~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~-l-~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~  112 (199)
T d2omxa2          39 LDQVT--TLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-L-KNLTKLVDILMNNNQIADITP-LANLTNLTGLT  112 (199)
T ss_dssp             HTTCC--EEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-G-TTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEE
T ss_pred             hcCCC--EEECCCCCCCCcc-ccccCCCcCcCccccccccCccc-c-cCCcccccccccccccccccc-ccccccccccc
Confidence            45555  6666666666553 35666667777777766666643 5 666777777776666666654 66666666666


Q ss_pred             cCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCCCC
Q 047903          219 FGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMP  298 (430)
Q Consensus       219 l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  298 (430)
                      +++|.... ++                      . +..+++|+.|+++++.  .. .+ ..+..+++|+.|++.+    .
T Consensus       113 l~~~~~~~-~~----------------------~-~~~l~~L~~L~l~~n~--l~-~~-~~l~~~~~L~~L~l~~----n  160 (199)
T d2omxa2         113 LFNNQITD-ID----------------------P-LKNLTNLNRLELSSNT--IS-DI-SALSGLTSLQQLNFSS----N  160 (199)
T ss_dssp             CCSSCCCC-CG----------------------G-GTTCTTCSEEECCSSC--CC-CC-GGGTTCTTCSEEECCS----S
T ss_pred             cccccccc-cc----------------------c-cchhhhhHHhhhhhhh--hc-cc-cccccccccccccccc----c
Confidence            66666554 22                      2 4445555555555543  11 11 1244455555555543    2


Q ss_pred             CceEEEEEcccccCCcceEEEEccccCC
Q 047903          299 TLSKIVLVEYQFPPRLTHLSFSNTELME  326 (430)
Q Consensus       299 ~L~~L~l~~~~lp~~L~~L~L~~~~l~~  326 (430)
                      +++.+. .+.++ ++|++|++++|++..
T Consensus       161 ~l~~l~-~l~~l-~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         161 QVTDLK-PLANL-TTLERLDISSNKVSD  186 (199)
T ss_dssp             CCCCCG-GGTTC-TTCCEEECCSSCCCC
T ss_pred             cccCCc-cccCC-CCCCEEECCCCCCCC
Confidence            233222 24556 777777777776644

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.5e-14  Score=127.57  Aligned_cols=120  Identities=12%  Similarity=0.030  Sum_probs=91.1

Q ss_pred             eEEEEeecCCCccccccccCcceEEEEEecCCccccccc-ccccccCCceeecCCCCCcc-cChHhhhcCCCccEEecCC
Q 047903          121 KRINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIHYLS-GIENLFLLRYLKLNIPSLKS-LPSPLLSNLLNLYTLDMPF  198 (430)
Q Consensus       121 r~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~-lp~~i~~~L~~L~~L~L~~  198 (430)
                      +.+... +.....+|+.+.++++  .|++++|.++.+|. .|.++++|++|++++|.+.. +|...|.++++++++.+..
T Consensus        11 ~~i~c~-~~~l~~iP~~l~~~l~--~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQ-ESKVTEIPSDLPRNAI--ELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEE-SCSCSSCCSCSCSCCS--EEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEe-CCCCCCcCCCCCCCCC--EEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            345555 5556667777777888  89999999998885 68899999999999998764 5555558999999998866


Q ss_pred             C-Cccccch-hhccCcccceeecCCcccCCCcC--ccCCCCcccceeecC
Q 047903          199 S-YIDHTAD-EFWKMNNLRHLNFGSITLPAHPR--KYCRSLENLNFISAL  244 (430)
Q Consensus       199 ~-~l~~lp~-~i~~L~~L~~L~l~~~~~~~~lp--~~l~~L~~L~~~~~~  244 (430)
                      + .+..++. .+.++++|+++++++|.+.. .|  ..+.+++.+......
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~-~~~~~~~~~l~~l~~~~~~  136 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQD  136 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCS-CCCCTTTCBSSCEEEEEES
T ss_pred             cccccccccccccccccccccccchhhhcc-ccccccccccccccccccc
Confidence            4 7776654 47889999999999998876 54  556666666554443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.6e-15  Score=137.44  Aligned_cols=202  Identities=16%  Similarity=0.162  Sum_probs=98.8

Q ss_pred             EEEecCCcccccccccccccCCceeecCCCCCcc-cChHhhhcCCCccEEecCCCCcc-ccchhhccCcccceeecCCcc
Q 047903          146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKS-LPSPLLSNLLNLYTLDMPFSYID-HTADEFWKMNNLRHLNFGSIT  223 (430)
Q Consensus       146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~-lp~~i~~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~  223 (430)
                      .+.+++..............+|++|++++|.+.. ....+|.++++|++|++++|.+. ..+..++++++|++|++++|.
T Consensus        27 ~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~  106 (284)
T d2astb2          27 AFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS  106 (284)
T ss_dssp             EEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCB
T ss_pred             EeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccc
Confidence            4444443333222223344566666666665542 12233366666666666666554 334445666666666665543


Q ss_pred             cCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcC-CCCCCEEEEecCCCCC-Cce
Q 047903          224 LPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCT-LTCLESLKLVSESKMP-TLS  301 (430)
Q Consensus       224 ~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~-~L~  301 (430)
                      -..                    .......+..+++|++|+++++.......+...+.. .++|+.|++++   +. .+.
T Consensus       107 ~it--------------------d~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~---~~~~i~  163 (284)
T d2astb2         107 GFS--------------------EFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG---YRKNLQ  163 (284)
T ss_dssp             SCC--------------------HHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS---CGGGSC
T ss_pred             ccc--------------------ccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcc---cccccc
Confidence            111                    122222134567788888877642223333333333 35677777764   21 111


Q ss_pred             EEEE--EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEE-cCCccccccEeEEe
Q 047903          302 KIVL--VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTM-GIGAMPKLECLIIN  378 (430)
Q Consensus       302 ~L~l--~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~  378 (430)
                      .-.+  ....+ ++|++|++++|....+.         .......+++|++|++++|+++..-.. ..+.+|+|+.|++.
T Consensus       164 ~~~l~~l~~~~-~~L~~L~L~~~~~itd~---------~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~  233 (284)
T d2astb2         164 KSDLSTLVRRC-PNLVHLDLSDSVMLKND---------CFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF  233 (284)
T ss_dssp             HHHHHHHHHHC-TTCSEEECTTCTTCCGG---------GGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred             ccccccccccc-ccccccccccccCCCch---------hhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeee
Confidence            1100  12244 67777777766432211         001123456677777766665543211 22346666666666


Q ss_pred             ec
Q 047903          379 PC  380 (430)
Q Consensus       379 ~c  380 (430)
                      +|
T Consensus       234 ~~  235 (284)
T d2astb2         234 GI  235 (284)
T ss_dssp             TS
T ss_pred             CC
Confidence            65

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=6.2e-14  Score=109.76  Aligned_cols=78  Identities=24%  Similarity=0.295  Sum_probs=67.0

Q ss_pred             EEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceeecCCcccC
Q 047903          146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLNFGSITLP  225 (430)
Q Consensus       146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~  225 (430)
                      +|++++|.++.++. ++.+++|++|++++|+++++|+.+ +.+++|++|++++|.++.+|. ++++++|++|++++|++.
T Consensus         2 ~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~~-~~l~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3           2 VLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPAL-AALRCLEVLQASDNALENVDG-VANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             EEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGG-GGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCC
T ss_pred             EEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchhhh-hhhhcccccccccccccccCc-cccccccCeEECCCCccC
Confidence            68888998887764 788888999999999998888877 889999999999998888875 888889999999888887


Q ss_pred             C
Q 047903          226 A  226 (430)
Q Consensus       226 ~  226 (430)
                      .
T Consensus        79 ~   79 (124)
T d1dcea3          79 Q   79 (124)
T ss_dssp             S
T ss_pred             C
Confidence            6

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.4e-13  Score=113.20  Aligned_cols=106  Identities=12%  Similarity=0.016  Sum_probs=70.0

Q ss_pred             CCCeeEEEEeecCCCccccccc--cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEE
Q 047903          117 RKNVKRINVFEKQSDFAHLDDY--DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTL  194 (430)
Q Consensus       117 ~~~~r~L~l~~~~~~~~~~~~~--~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L  194 (430)
                      +.++|.|++. ++.+..+++..  +++|+  +|++++|.++.++ .++.+++|++|++++|+++.+|+.+|..+++|++|
T Consensus        17 ~~~lr~L~L~-~n~I~~i~~~~~~l~~L~--~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          17 AVRDRELDLR-GYKIPVIENLGATLDQFD--AIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             TTSCEEEECT-TSCCCSCCCGGGGTTCCS--EEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             cCcCcEEECC-CCCCCccCccccccccCC--EEECCCCCCCccC-CcccCcchhhhhcccccccCCCccccccccccccc
Confidence            4456777777 66666554432  56666  7777777776663 46667777777777777777766555667777777


Q ss_pred             ecCCCCccccch--hhccCcccceeecCCcccCC
Q 047903          195 DMPFSYIDHTAD--EFWKMNNLRHLNFGSITLPA  226 (430)
Q Consensus       195 ~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~  226 (430)
                      ++++|.+..++.  .+..+++|++|++++|.+..
T Consensus        93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~  126 (162)
T d1a9na_          93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN  126 (162)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred             eeccccccccccccccccccccchhhcCCCcccc
Confidence            777776666653  36667777777777776654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=1.7e-13  Score=107.26  Aligned_cols=100  Identities=17%  Similarity=0.108  Sum_probs=88.4

Q ss_pred             eEEEEeecCCCccccccc--cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCC
Q 047903          121 KRINVFEKQSDFAHLDDY--DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPF  198 (430)
Q Consensus       121 r~L~l~~~~~~~~~~~~~--~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~  198 (430)
                      |.|++. ++.+..++. +  +++|+  .|++++|.++.+|+.++.+++|++|++++|.++.+|. + +++++|++|++++
T Consensus         1 R~L~Ls-~n~l~~l~~-l~~l~~L~--~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~-~-~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLA-HKDLTVLCH-LEQLLLVT--HLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-V-ANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECT-TSCCSSCCC-GGGGTTCC--EEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGG-G-TTCSSCCEEECCS
T ss_pred             CEEEcC-CCCCCCCcc-cccCCCCC--EEECCCCccCcchhhhhhhhcccccccccccccccCc-c-ccccccCeEECCC
Confidence            567777 777775654 4  88888  9999999999999999999999999999999999964 7 9999999999999


Q ss_pred             CCccccch--hhccCcccceeecCCcccCC
Q 047903          199 SYIDHTAD--EFWKMNNLRHLNFGSITLPA  226 (430)
Q Consensus       199 ~~l~~lp~--~i~~L~~L~~L~l~~~~~~~  226 (430)
                      |.+..+|.  .++.+++|++|++++|.+..
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            99998874  58999999999999999876

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.9e-13  Score=112.35  Aligned_cols=106  Identities=17%  Similarity=0.061  Sum_probs=82.0

Q ss_pred             cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchh-hccCccccee
Q 047903          139 DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADE-FWKMNNLRHL  217 (430)
Q Consensus       139 ~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L  217 (430)
                      ..++|  .|+|++|.++.++..+..+++|++|++++|.+++++ .+ +.+++|++|++++|.++.+|.. +..+++|++|
T Consensus        17 ~~~lr--~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~-~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          17 AVRDR--ELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GF-PLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             TTSCE--EEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CC-CCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             cCcCc--EEECCCCCCCccCccccccccCCEEECCCCCCCccC-Cc-ccCcchhhhhcccccccCCCccccccccccccc
Confidence            55677  889999999888876778889999999999988885 46 8899999999999988888765 4678899999


Q ss_pred             ecCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903          218 NFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL  269 (430)
Q Consensus       218 ~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  269 (430)
                      ++++|.+.. ++                   .+.. +..+++|+.|++.+|.
T Consensus        93 ~L~~N~i~~-~~-------------------~l~~-l~~l~~L~~L~l~~N~  123 (162)
T d1a9na_          93 ILTNNSLVE-LG-------------------DLDP-LASLKSLTYLCILRNP  123 (162)
T ss_dssp             ECCSCCCCC-GG-------------------GGGG-GGGCTTCCEEECCSSG
T ss_pred             eeccccccc-cc-------------------cccc-cccccccchhhcCCCc
Confidence            999988876 32                   1223 5556666666666664

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=4.6e-13  Score=117.87  Aligned_cols=217  Identities=15%  Similarity=0.089  Sum_probs=122.1

Q ss_pred             EEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccc-cch-hhccCcccceeecCC-c
Q 047903          146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDH-TAD-EFWKMNNLRHLNFGS-I  222 (430)
Q Consensus       146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~-lp~-~i~~L~~L~~L~l~~-~  222 (430)
                      +++.++..++.+|..+.  +++++|++++|.++.+|...|.++++|++|++++|.+.. +|. .+.++++++++.+.. +
T Consensus        12 ~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n   89 (242)
T d1xwdc1          12 VFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   89 (242)
T ss_dssp             EEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCT
T ss_pred             EEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccc
Confidence            66777777777776553  467888888888888776655788888888888876553 333 366777777776544 3


Q ss_pred             ccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccccccHHHHHHHhcCCCCCCEEEEecCCCCCCceE
Q 047903          223 TLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQSLLSQSLCTLTCLESLKLVSESKMPTLSK  302 (430)
Q Consensus       223 ~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~  302 (430)
                      .+.. +                    .... +.++++|++|++.++.  ....  ..+..+.+++.+.....+ ...+..
T Consensus        90 ~l~~-~--------------------~~~~-~~~l~~L~~l~l~~~~--l~~~--~~~~~~~~l~~l~~~~~~-n~~l~~  142 (242)
T d1xwdc1          90 NLLY-I--------------------NPEA-FQNLPNLQYLLISNTG--IKHL--PDVHKIHSLQKVLLDIQD-NINIHT  142 (242)
T ss_dssp             TCCE-E--------------------CTTS-EECCTTCCEEEEESCC--CCSC--CCCTTTCBSSCEEEEEES-CTTCCE
T ss_pred             cccc-c--------------------cccc-ccccccccccccchhh--hccc--cccccccccccccccccc-cccccc
Confidence            3333 2                    1222 5566666666666654  1110  111222233333221100 123333


Q ss_pred             EEE-EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEcC-CccccccEeEEeec
Q 047903          303 IVL-VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGI-GAMPKLECLIINPC  380 (430)
Q Consensus       303 L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~c  380 (430)
                      +.. .+..++..++.|++++|.+...+           ......+++..+.....++++.++... ..+++|++|+++++
T Consensus       143 i~~~~~~~~~~~l~~L~l~~n~l~~i~-----------~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N  211 (242)
T d1xwdc1         143 IERNSFVGLSFESVILWLNKNGIQEIH-----------NCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT  211 (242)
T ss_dssp             ECTTSSTTSBSSCEEEECCSSCCCEEC-----------TTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTS
T ss_pred             ccccccccccccceeeecccccccccc-----------cccccchhhhccccccccccccccHHHhcCCCCCCEEECCCC
Confidence            321 23344357788888887764321           111223455555544556677776543 56888999999886


Q ss_pred             CCCCcCCC-CCCCCCCCCEEEEec
Q 047903          381 AYLKKMPE-QPWCIKSLNKFNCWW  403 (430)
Q Consensus       381 ~~l~~lp~-~l~~l~~L~~L~l~~  403 (430)
                      . ++.+|. ++.++++|+.+++.+
T Consensus       212 ~-l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         212 R-IHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             C-CCCCCSSSCTTCCEEESSSEES
T ss_pred             c-CCccCHHHHcCCcccccCcCCC
Confidence            4 777765 355555555555443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.2e-13  Score=124.84  Aligned_cols=208  Identities=18%  Similarity=0.121  Sum_probs=132.5

Q ss_pred             cCcceEEEEEecCCccc--ccccccccccCCceeecCCCCCc-ccChHhhhcCCCccEEecCCC-Cccc--cchhhccCc
Q 047903          139 DSHMHSLVLDLGSLVLI--HYLSGIENLFLLRYLKLNIPSLK-SLPSPLLSNLLNLYTLDMPFS-YIDH--TADEFWKMN  212 (430)
Q Consensus       139 ~~~L~~L~L~l~~~~l~--~lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~~~L~~L~~L~L~~~-~l~~--lp~~i~~L~  212 (430)
                      ..+|+  .||+++|.++  .+...+..+++|++|++++|.++ ..+..+ +++++|++|++++| .++.  +..-...++
T Consensus        45 ~~~L~--~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l-~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~  121 (284)
T d2astb2          45 PFRVQ--HMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSCS  121 (284)
T ss_dssp             CBCCC--EEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred             CCCCC--EEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHH-hcCCCCcCccccccccccccccchhhHHHH
Confidence            66788  9999999876  35566788999999999999987 446667 99999999999998 7763  333356789


Q ss_pred             ccceeecCCcccCCCcCccCCCCcccceeecCCCCcchhhhc-CCCCCCceEEEEcccc-ccHHHHHHHhcCCCCCCEEE
Q 047903          213 NLRHLNFGSITLPAHPRKYCRSLENLNFISALHPCCCTEDIL-GRLPNLRNLRIWGDLS-YYQSLLSQSLCTLTCLESLK  290 (430)
Q Consensus       213 ~L~~L~l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~-~~~~~~~~~l~~l~~L~~L~  290 (430)
                      +|++|++++|....                    ......++ ...++|+.|++.++.. .....+......+++|++|+
T Consensus       122 ~L~~L~ls~c~~~~--------------------~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~  181 (284)
T d2astb2         122 RLDELNLSWCFDFT--------------------EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD  181 (284)
T ss_dssp             TCCEEECCCCTTCC--------------------HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred             hccccccccccccc--------------------cccchhhhcccccccchhhhcccccccccccccccccccccccccc
Confidence            99999998874322                    01111112 2236778888876532 22334445556678888888


Q ss_pred             EecCCCCCCceEEEE-EcccccCCcceEEEEccccCCcccccccCCCeEEEcCCCCCcccEEEEeeCCCCCceEEcCCcc
Q 047903          291 LVSESKMPTLSKIVL-VEYQFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGIGAM  369 (430)
Q Consensus       291 l~~~~~~~~L~~L~l-~~~~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  369 (430)
                      +++   ++.++.-.+ .+..+ ++|++|++++|....+.        . ......+|+|+.|++.+|-.-..+..-...+
T Consensus       182 L~~---~~~itd~~~~~l~~~-~~L~~L~L~~C~~i~~~--------~-l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~l  248 (284)
T d2astb2         182 LSD---SVMLKNDCFQEFFQL-NYLQHLSLSRCYDIIPE--------T-LLELGEIPTLKTLQVFGIVPDGTLQLLKEAL  248 (284)
T ss_dssp             CTT---CTTCCGGGGGGGGGC-TTCCEEECTTCTTCCGG--------G-GGGGGGCTTCCEEECTTSSCTTCHHHHHHHS
T ss_pred             ccc---ccCCCchhhhhhccc-CcCCEEECCCCCCCChH--------H-HHHHhcCCCCCEEeeeCCCCHHHHHHHHHhC
Confidence            876   444432211 34566 88999999987532221        0 0112457899999998762222222111234


Q ss_pred             ccccEeEEeecCCCCcC
Q 047903          370 PKLECLIINPCAYLKKM  386 (430)
Q Consensus       370 ~~L~~L~l~~c~~l~~l  386 (430)
                      |+|   .+ +|..+..+
T Consensus       249 p~L---~i-~~~~ls~~  261 (284)
T d2astb2         249 PHL---QI-NCSHFTTI  261 (284)
T ss_dssp             TTS---EE-SCCCSCCT
T ss_pred             ccc---cc-cCccCCCC
Confidence            554   44 45666554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.31  E-value=1.5e-12  Score=110.30  Aligned_cols=104  Identities=15%  Similarity=0.099  Sum_probs=76.9

Q ss_pred             EEEEeecCCCccccccccCcceEEEEEecCCcccc-cc-cccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCC
Q 047903          122 RINVFEKQSDFAHLDDYDSHMHSLVLDLGSLVLIH-YL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFS  199 (430)
Q Consensus       122 ~L~l~~~~~~~~~~~~~~~~L~~L~L~l~~~~l~~-lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~  199 (430)
                      .+... +.....+|.++.++++  .|+|++|.++. ++ ..|.++++|+.|++++|.+..++...|..+++|++|+|++|
T Consensus        12 ~v~Cs-~~~L~~iP~~lp~~l~--~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          12 TVDCT-GRGLKEIPRDIPLHTT--ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             EEECT-TSCCSSCCSCCCTTCS--EEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             EEEEe-CCCcCccCCCCCCCCC--EEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            34444 5555567777777778  78888888863 43 56678888888888888888776666688888888888888


Q ss_pred             Cccccchh-hccCcccceeecCCcccCCCcC
Q 047903          200 YIDHTADE-FWKMNNLRHLNFGSITLPAHPR  229 (430)
Q Consensus       200 ~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp  229 (430)
                      +++.+|.. |.++++|++|+|++|.+.. +|
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~-i~  118 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISC-VM  118 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCE-EC
T ss_pred             cccccCHHHHhCCCcccccccCCccccc-cC
Confidence            88877654 7778888888888888776 44

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.31  E-value=2.5e-12  Score=108.87  Aligned_cols=120  Identities=18%  Similarity=0.204  Sum_probs=62.8

Q ss_pred             EEEecCCcccccccccccccCCceeecCCCCCcc-cChHhhhcCCCccEEecCCCCccccch-hhccCcccceeecCCcc
Q 047903          146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKS-LPSPLLSNLLNLYTLDMPFSYIDHTAD-EFWKMNNLRHLNFGSIT  223 (430)
Q Consensus       146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~-lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~  223 (430)
                      +++.++++++.+|..+.  .++++|+|++|.|+. ++...|+++++|+.|++++|.+..++. .+..+++|++|++++|+
T Consensus        12 ~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~   89 (192)
T d1w8aa_          12 TVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             EEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             EEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccc
Confidence            45556666666665442  455666666666653 334444666666666666665555443 35556666666666666


Q ss_pred             cCCCcC-c---cCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903          224 LPAHPR-K---YCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL  269 (430)
Q Consensus       224 ~~~~lp-~---~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  269 (430)
                      +.. +| .   .+++|+.|.+.++......+.. |..+++|++|++.++.
T Consensus        90 l~~-l~~~~F~~l~~L~~L~L~~N~l~~i~~~~-f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_          90 IKE-ISNKMFLGLHQLKTLNLYDNQISCVMPGS-FEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CCE-ECSSSSTTCTTCCEEECCSSCCCEECTTS-STTCTTCCEEECTTCC
T ss_pred             ccc-cCHHHHhCCCcccccccCCccccccCHHH-hcCCcccccccccccc
Confidence            665 54 2   2333333333333322222233 5556666666665554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.23  E-value=1.6e-13  Score=116.86  Aligned_cols=105  Identities=19%  Similarity=0.145  Sum_probs=68.4

Q ss_pred             cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccchhhccCcccceee
Q 047903          139 DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTADEFWKMNNLRHLN  218 (430)
Q Consensus       139 ~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~  218 (430)
                      +++|+  .|++++|.++.++ .++.+++|++|++++|.++.+|... ..+++|++|++++|.++.++. +.++++|++|+
T Consensus        47 L~~L~--~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~-~~~~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~  121 (198)
T d1m9la_          47 LKACK--HLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLD-AVADTLEELWISYNQIASLSG-IEKLVNLRVLY  121 (198)
T ss_dssp             TTTCC--EEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHH-HHHHHCCEEECSEEECCCHHH-HHHHHHSSEEE
T ss_pred             ccccc--eeECcccCCCCcc-cccCCccccChhhcccccccccccc-ccccccccccccccccccccc-ccccccccccc
Confidence            66666  6666666666654 4666667777777776666666544 555666777776666666543 66666677776


Q ss_pred             cCCcccCCCcCccCCCCcccceeecCCCCcchhhhcCCCCCCceEEEEccc
Q 047903          219 FGSITLPAHPRKYCRSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL  269 (430)
Q Consensus       219 l~~~~~~~~lp~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  269 (430)
                      +++|.+.. +                   ..+.. ++.+++|+.|++.+|.
T Consensus       122 L~~N~i~~-~-------------------~~~~~-l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         122 MSNNKITN-W-------------------GEIDK-LAALDKLEDLLLAGNP  151 (198)
T ss_dssp             ESEEECCC-H-------------------HHHHH-HTTTTTCSEEEECSSH
T ss_pred             cccchhcc-c-------------------ccccc-ccCCCccceeecCCCc
Confidence            66666654 1                   12344 7788888888888774

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=2.3e-10  Score=92.89  Aligned_cols=100  Identities=15%  Similarity=0.165  Sum_probs=72.9

Q ss_pred             EEEeecCCCccccccc--cCcceEEEEEecCCc-ccccc-cccccccCCceeecCCCCCcccChHhhhcCCCccEEecCC
Q 047903          123 INVFEKQSDFAHLDDY--DSHMHSLVLDLGSLV-LIHYL-SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPF  198 (430)
Q Consensus       123 L~l~~~~~~~~~~~~~--~~~L~~L~L~l~~~~-l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~  198 (430)
                      +... +......+..+  .++++  .|++++++ ++.++ .+|.++++|+.|++++|+|+.+++..|..+++|++|+|++
T Consensus        13 l~c~-~~~~~~~p~~l~~l~~l~--~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          13 LRCT-RDGALDSLHHLPGAENLT--ELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             EECC-SSCCCTTTTTSCSCSCCS--EEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEec-CCCCccCcccccCccccC--eeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            3334 34433455555  66777  77887664 77776 4678888888888888888888666668888888888888


Q ss_pred             CCccccchhhccCcccceeecCCcccC
Q 047903          199 SYIDHTADEFWKMNNLRHLNFGSITLP  225 (430)
Q Consensus       199 ~~l~~lp~~i~~L~~L~~L~l~~~~~~  225 (430)
                      |+++.+|.++....+|++|++++|.+.
T Consensus        90 N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          90 NALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCCcccChhhhccccccccccCCCccc
Confidence            888888877555567888888888765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=7.5e-10  Score=89.71  Aligned_cols=83  Identities=20%  Similarity=0.071  Sum_probs=74.5

Q ss_pred             EEEecCCcccccccccccccCCceeecCCC-CCcccChHhhhcCCCccEEecCCCCccccch-hhccCcccceeecCCcc
Q 047903          146 VLDLGSLVLIHYLSGIENLFLLRYLKLNIP-SLKSLPSPLLSNLLNLYTLDMPFSYIDHTAD-EFWKMNNLRHLNFGSIT  223 (430)
Q Consensus       146 ~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~-~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~  223 (430)
                      .++.+++.+...|..+..+++|+.|+++++ .++.++...|.++++|+.|++++|+++.++. .|..+++|++|+|++|.
T Consensus        12 ~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (156)
T ss_dssp             CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             eEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCC
Confidence            678888888889999999999999999876 4999987766999999999999999999965 48999999999999999


Q ss_pred             cCCCcC
Q 047903          224 LPAHPR  229 (430)
Q Consensus       224 ~~~~lp  229 (430)
                      +.. +|
T Consensus        92 l~~-l~   96 (156)
T d2ifga3          92 LES-LS   96 (156)
T ss_dssp             CSC-CC
T ss_pred             Ccc-cC
Confidence            987 66

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.93  E-value=2.8e-11  Score=102.56  Aligned_cols=105  Identities=17%  Similarity=0.138  Sum_probs=90.2

Q ss_pred             CCCCeeEEEEeecCCCccccccc--cCcceEEEEEecCCcccccccccccccCCceeecCCCCCcccChHhhhcCCCccE
Q 047903          116 SRKNVKRINVFEKQSDFAHLDDY--DSHMHSLVLDLGSLVLIHYLSGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYT  193 (430)
Q Consensus       116 ~~~~~r~L~l~~~~~~~~~~~~~--~~~L~~L~L~l~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~  193 (430)
                      ...++++|.+. ++.+..++ .+  +++|+  +|++++|.++.+|..+..+++|++|++++|+++.++ .+ .++++|++
T Consensus        46 ~L~~L~~L~Ls-~n~I~~i~-~l~~l~~L~--~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~-~~l~~L~~  119 (198)
T d1m9la_          46 TLKACKHLALS-TNNIEKIS-SLSGMENLR--ILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GI-EKLVNLRV  119 (198)
T ss_dssp             HTTTCCEEECS-EEEESCCC-CHHHHTTCC--EEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-HH-HHHHHSSE
T ss_pred             cccccceeECc-ccCCCCcc-cccCCcccc--Chhhcccccccccccccccccccccccccccccccc-cc-cccccccc
Confidence            36679999999 66666564 45  88999  999999999998876677789999999999999884 46 99999999


Q ss_pred             EecCCCCccccch--hhccCcccceeecCCcccCC
Q 047903          194 LDMPFSYIDHTAD--EFWKMNNLRHLNFGSITLPA  226 (430)
Q Consensus       194 L~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~  226 (430)
                      |++++|.++.++.  .++.+++|++|++++|.+..
T Consensus       120 L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             EEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             cccccchhccccccccccCCCccceeecCCCcccc
Confidence            9999999998874  58999999999999998765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=7.4e-11  Score=112.98  Aligned_cols=104  Identities=13%  Similarity=0.104  Sum_probs=68.7

Q ss_pred             CeeEEEEeecCCCcc-c-cccc--cCcceEEEEEecCCccc-----ccccccccccCCceeecCCCCCccc-----ChHh
Q 047903          119 NVKRINVFEKQSDFA-H-LDDY--DSHMHSLVLDLGSLVLI-----HYLSGIENLFLLRYLKLNIPSLKSL-----PSPL  184 (430)
Q Consensus       119 ~~r~L~l~~~~~~~~-~-~~~~--~~~L~~L~L~l~~~~l~-----~lp~~~~~l~~L~~L~L~~~~i~~l-----p~~i  184 (430)
                      +++.|.+. .+.+.. . .+-+  +++++  +|+|++|.++     .+...+..+++|++|+|++|.++..     ...+
T Consensus         3 ~l~~ld~~-~~~i~~~~~~~l~~~l~~l~--~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l   79 (460)
T d1z7xw1           3 DIQSLDIQ-CEELSDARWAELLPLLQQCQ--VVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEE-SCCCCHHHHHHHHHHHTTCS--EEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CCCEEEee-CCcCChHHHHHHHHhCCCCC--EEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHH
Confidence            46778887 554432 1 2222  77777  8888888776     3345567788888888888887632     1122


Q ss_pred             hhcCCCccEEecCCCCccc-----cchhhccCcccceeecCCcccC
Q 047903          185 LSNLLNLYTLDMPFSYIDH-----TADEFWKMNNLRHLNFGSITLP  225 (430)
Q Consensus       185 ~~~L~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~~  225 (430)
                      .....+|++|++++|.++.     ++..+..+++|++|++++|.+.
T Consensus        80 ~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             hcCCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            1123578888888887764     3455677888888888888654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.61  E-value=1.1e-08  Score=94.16  Aligned_cols=84  Identities=15%  Similarity=0.034  Sum_probs=58.6

Q ss_pred             cCcceEEEEEecCCccc-----ccccccccccCCceeecCCCCCccc-----------ChHhhhcCCCccEEecCCCCcc
Q 047903          139 DSHMHSLVLDLGSLVLI-----HYLSGIENLFLLRYLKLNIPSLKSL-----------PSPLLSNLLNLYTLDMPFSYID  202 (430)
Q Consensus       139 ~~~L~~L~L~l~~~~l~-----~lp~~~~~l~~L~~L~L~~~~i~~l-----------p~~i~~~L~~L~~L~L~~~~l~  202 (430)
                      ...++  .|++++|.+.     .+...+...++|+.|+++++.....           ...+ ..+++|+.|+|++|.+.
T Consensus        30 ~~~l~--~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~L~~L~L~~n~i~  106 (344)
T d2ca6a1          30 DDSVK--EIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL-LKCPKLHTVRLSDNAFG  106 (344)
T ss_dssp             CSCCC--EEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHH-TTCTTCCEEECCSCCCC
T ss_pred             CCCCC--EEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHH-hhCCCcccccccccccc
Confidence            56666  8888888764     3345567778888888887653322           2223 66788999999888665


Q ss_pred             c-----cchhhccCcccceeecCCcccC
Q 047903          203 H-----TADEFWKMNNLRHLNFGSITLP  225 (430)
Q Consensus       203 ~-----lp~~i~~L~~L~~L~l~~~~~~  225 (430)
                      .     +...+...++|++|++++|.+.
T Consensus       107 ~~~~~~l~~~l~~~~~L~~L~l~~n~l~  134 (344)
T d2ca6a1         107 PTAQEPLIDFLSKHTPLEHLYLHNNGLG  134 (344)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             cccccchhhhhcccccchheeccccccc
Confidence            3     4445667888889988887654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=8.8e-09  Score=98.12  Aligned_cols=100  Identities=14%  Similarity=0.155  Sum_probs=73.1

Q ss_pred             cceEEEEEecCCcccc--cccccccccCCceeecCCCCCc-----ccChHhhhcCCCccEEecCCCCcccc-----chhh
Q 047903          141 HMHSLVLDLGSLVLIH--YLSGIENLFLLRYLKLNIPSLK-----SLPSPLLSNLLNLYTLDMPFSYIDHT-----ADEF  208 (430)
Q Consensus       141 ~L~~L~L~l~~~~l~~--lp~~~~~l~~L~~L~L~~~~i~-----~lp~~i~~~L~~L~~L~L~~~~l~~l-----p~~i  208 (430)
                      +|+  +||+++++++.  +...+..+++++.|+|++|+++     .++..+ ..+++|++|+|++|.++..     ...+
T Consensus         3 ~l~--~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L-~~~~~L~~LdLs~N~i~~~~~~~l~~~l   79 (460)
T d1z7xw1           3 DIQ--SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSAL-RVNPALAELNLRSNELGDVGVHCVLQGL   79 (460)
T ss_dssp             EEE--EEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHH-HTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CCC--EEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHH-hcCCCCCEEECcCCcCChHHHHHHHHHH
Confidence            455  89999999983  3456778999999999999987     334555 8999999999999988632     2222


Q ss_pred             c-cCcccceeecCCcccCCC----cC---ccCCCCcccceeec
Q 047903          209 W-KMNNLRHLNFGSITLPAH----PR---KYCRSLENLNFISA  243 (430)
Q Consensus       209 ~-~L~~L~~L~l~~~~~~~~----lp---~~l~~L~~L~~~~~  243 (430)
                      . ...+|++|++++|.+...    ++   ..+++|+.|.+.++
T Consensus        80 ~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N  122 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN  122 (460)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS
T ss_pred             hcCCCCCCEEECCCCCccccccccccchhhccccccccccccc
Confidence            2 235799999999998753    22   45566776665443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.42  E-value=1.9e-07  Score=85.60  Aligned_cols=224  Identities=17%  Similarity=0.078  Sum_probs=133.7

Q ss_pred             CCCeeEEEEeecCCCc-----cccccc--cCcceEEEEEecCCcccc-----------cccccccccCCceeecCCCCCc
Q 047903          117 RKNVKRINVFEKQSDF-----AHLDDY--DSHMHSLVLDLGSLVLIH-----------YLSGIENLFLLRYLKLNIPSLK  178 (430)
Q Consensus       117 ~~~~r~L~l~~~~~~~-----~~~~~~--~~~L~~L~L~l~~~~l~~-----------lp~~~~~l~~L~~L~L~~~~i~  178 (430)
                      ...++.|.+. ++.+.     .+.+.+  .++|+  .++++++....           +...+...++|+.|++++|.+.
T Consensus        30 ~~~l~~L~Ls-~n~i~~~~~~~l~~~l~~~~~L~--~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  106 (344)
T d2ca6a1          30 DDSVKEIVLS-GNTIGTEAARWLSENIASKKDLE--IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  106 (344)
T ss_dssp             CSCCCEEECT-TSEECHHHHHHHHHTTTTCTTCC--EEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             CCCCCEEECc-CCcCCHHHHHHHHHHHHhCCCCC--EEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccc
Confidence            3456777777 54432     122333  66777  77887765331           2233556788999999988866


Q ss_pred             c-----cChHhhhcCCCccEEecCCCCcccc-----chh---------hccCcccceeecCCcccCCC----cC---ccC
Q 047903          179 S-----LPSPLLSNLLNLYTLDMPFSYIDHT-----ADE---------FWKMNNLRHLNFGSITLPAH----PR---KYC  232 (430)
Q Consensus       179 ~-----lp~~i~~~L~~L~~L~L~~~~l~~l-----p~~---------i~~L~~L~~L~l~~~~~~~~----lp---~~l  232 (430)
                      .     +...+ ..+++|+.|++++|.+..-     ...         ....+.|+.+++++|.+...    +.   ...
T Consensus       107 ~~~~~~l~~~l-~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~  185 (344)
T d2ca6a1         107 PTAQEPLIDFL-SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH  185 (344)
T ss_dssp             TTTHHHHHHHH-HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred             cccccchhhhh-cccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhh
Confidence            4     34445 7788999999998865421     111         23567788898888877643    11   455


Q ss_pred             CCCcccceeecCCCCcc----hhhhcCCCCCCceEEEEcccc--ccHHHHHHHhcCCCCCCEEEEecCCCCCCceEEEE-
Q 047903          233 RSLENLNFISALHPCCC----TEDILGRLPNLRNLRIWGDLS--YYQSLLSQSLCTLTCLESLKLVSESKMPTLSKIVL-  305 (430)
Q Consensus       233 ~~L~~L~~~~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~--~~~~~~~~~l~~l~~L~~L~l~~~~~~~~L~~L~l-  305 (430)
                      +.++.|.+..+......    ...++...++|+.|++++|.-  .....+...+...++|++|++++   + .+..-.. 
T Consensus       186 ~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~---n-~i~~~g~~  261 (344)
T d2ca6a1         186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND---C-LLSARGAA  261 (344)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT---C-CCCHHHHH
T ss_pred             hhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhc---C-ccCchhhH
Confidence            66777766655532211    222266778899999988861  11234556778888999999886   2 1211000 


Q ss_pred             ----Ecc--cccCCcceEEEEccccCCcccccccCCCeEEEcC-CCCCcccEEEEee
Q 047903          306 ----VEY--QFPPRLTHLSFSNTELMEDPKSRASSSRKLTCGS-DGFPNLKVLHLKS  355 (430)
Q Consensus       306 ----~~~--~lp~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~  355 (430)
                          .+.  .. +.|++|++++|.+.......      +.... ...++|+.|++++
T Consensus       262 ~l~~~l~~~~~-~~L~~L~ls~N~i~~~~~~~------l~~~l~~~~~~L~~L~l~~  311 (344)
T d2ca6a1         262 AVVDAFSKLEN-IGLQTLRLQYNEIELDAVRT------LKTVIDEKMPDLLFLELNG  311 (344)
T ss_dssp             HHHHHHHTCSS-CCCCEEECCSSCCBHHHHHH------HHHHHHHHCTTCCEEECTT
T ss_pred             HHHHHhhhccC-CCCCEEECCCCcCChHHHHH------HHHHHHccCCCCCEEECCC
Confidence                111  12 57889999988765432100      00000 1356788888876

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=1.3e-06  Score=70.60  Aligned_cols=70  Identities=20%  Similarity=0.092  Sum_probs=52.4

Q ss_pred             cccccccccCCceeecCCCCCcccCh--HhhhcCCCccEEecCCCCccccchh-hccCcccceeecCCcccCC
Q 047903          157 YLSGIENLFLLRYLKLNIPSLKSLPS--PLLSNLLNLYTLDMPFSYIDHTADE-FWKMNNLRHLNFGSITLPA  226 (430)
Q Consensus       157 lp~~~~~l~~L~~L~L~~~~i~~lp~--~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~  226 (430)
                      ++..+..+++|++|++++|+|+.++.  ..+..+++|+.|++++|.++.++.. ..+..+|++|++++|.+..
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            33344578889999999999887642  2237889999999999988888762 3345578899999988875

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=2.4e-06  Score=68.95  Aligned_cols=78  Identities=21%  Similarity=0.037  Sum_probs=62.1

Q ss_pred             cCcceEEEEEecCCcccccc---cccccccCCceeecCCCCCcccChHhhhcCCCccEEecCCCCccccc--------hh
Q 047903          139 DSHMHSLVLDLGSLVLIHYL---SGIENLFLLRYLKLNIPSLKSLPSPLLSNLLNLYTLDMPFSYIDHTA--------DE  207 (430)
Q Consensus       139 ~~~L~~L~L~l~~~~l~~lp---~~~~~l~~L~~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp--------~~  207 (430)
                      +++|+  +|++++|.++.++   ..+..+++|++|++++|.|+++++--+.+..+|+.|++++|.+....        ..
T Consensus        64 ~~~L~--~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          64 IPELL--SLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             CTTCC--CCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             CCCCC--EeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            77888  9999999998654   45678999999999999999987633356678999999999776432        22


Q ss_pred             hccCcccceee
Q 047903          208 FWKMNNLRHLN  218 (430)
Q Consensus       208 i~~L~~L~~L~  218 (430)
                      +..+|+|++||
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            56788999884

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.14  E-value=0.00015  Score=58.19  Aligned_cols=40  Identities=20%  Similarity=0.121  Sum_probs=20.4

Q ss_pred             hcCCCccEEecCCCCcc-----ccchhhccCcccceeecCCcccC
Q 047903          186 SNLLNLYTLDMPFSYID-----HTADEFWKMNNLRHLNFGSITLP  225 (430)
Q Consensus       186 ~~L~~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~~  225 (430)
                      ...++|++|++++|.+.     .+...+...+.|++|++++|.+.
T Consensus        41 ~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          41 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             hhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            44555566666555443     12223444555666666555544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.64  E-value=0.001  Score=53.03  Aligned_cols=85  Identities=7%  Similarity=0.115  Sum_probs=61.1

Q ss_pred             cCcceEEEEEecCC-ccc-----ccccccccccCCceeecCCCCCcc-----cChHhhhcCCCccEEecCCCCccc----
Q 047903          139 DSHMHSLVLDLGSL-VLI-----HYLSGIENLFLLRYLKLNIPSLKS-----LPSPLLSNLLNLYTLDMPFSYIDH----  203 (430)
Q Consensus       139 ~~~L~~L~L~l~~~-~l~-----~lp~~~~~l~~L~~L~L~~~~i~~-----lp~~i~~~L~~L~~L~L~~~~l~~----  203 (430)
                      .++|+  .|+++++ .++     .+-..+...++|++|++++|.+..     +...+ ...+.|+.|++++|.+..    
T Consensus        14 ~~~L~--~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L-~~n~~L~~L~L~~n~i~~~g~~   90 (167)
T d1pgva_          14 DTDLK--EVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELI-ETSPSLRVLNVESNFLTPELLA   90 (167)
T ss_dssp             CSSCC--EEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHH-HHCSSCCEEECCSSBCCHHHHH
T ss_pred             CCCCc--EEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhh-hhcccccceeeehhhcchHHHH
Confidence            45677  8888874 354     233456777889999999998762     23345 778899999999997763    


Q ss_pred             -cchhhccCcccceeecCCcccCC
Q 047903          204 -TADEFWKMNNLRHLNFGSITLPA  226 (430)
Q Consensus       204 -lp~~i~~L~~L~~L~l~~~~~~~  226 (430)
                       +-..+..-+.|++|++++|....
T Consensus        91 ~l~~aL~~n~sL~~L~l~~n~~~~  114 (167)
T d1pgva_          91 RLLRSTLVTQSIVEFKADNQRQSV  114 (167)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCC
T ss_pred             HHHHHHHhCCcCCEEECCCCcCCC
Confidence             33446677889999888886654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.51  E-value=0.00079  Score=53.68  Aligned_cols=63  Identities=17%  Similarity=0.080  Sum_probs=33.0

Q ss_pred             cccCCceeecCCC-CCc-----ccChHhhhcCCCccEEecCCCCccc-----cchhhccCcccceeecCCcccCC
Q 047903          163 NLFLLRYLKLNIP-SLK-----SLPSPLLSNLLNLYTLDMPFSYIDH-----TADEFWKMNNLRHLNFGSITLPA  226 (430)
Q Consensus       163 ~l~~L~~L~L~~~-~i~-----~lp~~i~~~L~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~~~  226 (430)
                      +.+.|++|+++++ .++     .+-..+ ...++|++|++++|.+..     +...+...+.++.+++++|.+..
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al-~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~   88 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEAL-KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG   88 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHH-TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHH-hcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccc
Confidence            4456666666652 343     122223 456666666666665442     22334555666666666655543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.49  E-value=0.019  Score=45.14  Aligned_cols=79  Identities=11%  Similarity=0.161  Sum_probs=54.2

Q ss_pred             cCcceEEEEEecCC-ccc-----ccccccccccCCceeecCCCCCcc-----cChHhhhcCCCccEEecCCCCcc-----
Q 047903          139 DSHMHSLVLDLGSL-VLI-----HYLSGIENLFLLRYLKLNIPSLKS-----LPSPLLSNLLNLYTLDMPFSYID-----  202 (430)
Q Consensus       139 ~~~L~~L~L~l~~~-~l~-----~lp~~~~~l~~L~~L~L~~~~i~~-----lp~~i~~~L~~L~~L~L~~~~l~-----  202 (430)
                      .+.|+  .|+++++ .++     .+-..+...++|+.|++++|.++.     +-..+ ...+.++.+++++|.+.     
T Consensus        16 ~~~L~--~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l-~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          16 DPDLE--EVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML-KVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             CTTCC--EEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHH-HHCSSCCEEECCSSCCCHHHHH
T ss_pred             CCCCc--EEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHH-hhcccchhhhhccccccchhHH
Confidence            45666  7777763 454     234556678889999999998762     33344 77899999999988664     


Q ss_pred             ccchhhccCcccceeecC
Q 047903          203 HTADEFWKMNNLRHLNFG  220 (430)
Q Consensus       203 ~lp~~i~~L~~L~~L~l~  220 (430)
                      .+...+...++|+.++|+
T Consensus        93 ~l~~~l~~~~~L~~l~L~  110 (166)
T d1io0a_          93 ALVEALQSNTSLIELRID  110 (166)
T ss_dssp             HHHHGGGGCSSCCEEECC
T ss_pred             HHHHHHHhCccccEEeec
Confidence            234456777788876553