Citrus Sinensis ID: 047919

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-
Protein Sequence
MGIRLPSVIQNAKQILKKHNNHALSRNQPAEVPKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDLTYRLHKQV
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHccccccccccccccccEEEEEEEcccEEEEEEEcccccHHHHHHHHHHHHHHHccccccccEEEEccHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHcHHHHcccccccccccEEEEEEccccccEEEEEEcHcccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MGIRLPSVIQNAKQILKKHNnhalsrnqpaevpkghIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEefgfnhpmggltvpckeddfidLTYRLHKQV
Flexible Loop (DISEMBL)
MGIRLPSVIQNAKQILKKHNNhalsrnqpaevpkGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDLTYRLHKQV
Low Complexity Region (SEG)
MGIRLPSVIQNAKQILKKHNNHALSRNQPAEVPKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDLTYRLHKQV
Disordered region (IsUnstruct)
*********************************KGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDLTYRL****
Disordered Region (DISOPRED)
*GIR****I*************************GHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDLTYRLHKQ*
Disordered Region (DISEMBL)
MGIRLPSVIQNAKQILKKHNNHALSRNQPAEVPKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDLTYRLHKQV
Disordered Region (DISPRO)
*GIRLPSVIQNAKQILKKHNNH****NQPAEVPKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDLTYRLHK**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGIRLPSVIQNAKQILKKHNNHALSRNQPAEVPKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDLTYRLHKQV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	101	2.2.26 [Sep-21-2011]
P33080	92	Auxin-induced protein X10	no	no	0.891	0.978	0.520	1e-22
P32295	92	Indole-3-acetic acid-indu	N/A	no	0.910	1.0	0.51	9e-22
P33081	82	Auxin-induced protein 15A	no	no	0.811	1.0	0.510	4e-21
P33079	93	Auxin-induced protein 10A	no	no	0.910	0.989	0.464	8e-21
P33082	82	Auxin-induced protein X15	no	no	0.811	1.0	0.489	9e-20
P33083	90	Auxin-induced protein 6B	no	no	0.891	1.0	0.5	4e-19

>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1

 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 51/98 (52%), Positives = 70/98 (71%), Gaps = 8/98 (8%)

Query: 1  MGIRLPSVIQNAKQILKKHNNHALSRNQPAEVPKGHIAVYVGEMERKRFVVPISYLNHPL 60
          MG RLP + + +        N A S++   EVPKG++ VYVG+  R RF++P+SYLN P 
Sbjct: 1  MGFRLPGIRKTSIAA-----NQASSKS--VEVPKGYLVVYVGDKMR-RFLIPVSYLNQPS 52

Query: 61 FADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDLTYRLH 98
          F DLL +AEEEFG++HPMGGLT+PCKED+F+ +T  L+
Sbjct: 53 FQDLLNQAEEEFGYDHPMGGLTIPCKEDEFLTVTSHLN 90

Glycine max (taxid: 3847)

>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1

 Score =  102 bits (253), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 51/100 (51%), Positives = 68/100 (68%), Gaps = 8/100 (8%)

Query: 1   MGIRLPSVIQNAKQILKKHNNHALSRNQPAEVPKGHIAVYVGEMERKRFVVPISYLNHPL 60
           MG RLP +    ++ L   N    + ++  + PKG++AVYVGE   KRFV+P+S+LN PL
Sbjct: 1   MGFRLPGI----RKTLSARNE---ASSKVLDAPKGYLAVYVGE-NMKRFVIPVSHLNQPL 52

Query: 61  FADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDLTYRLHKQ 100
           F DLL +AEEEFG++HPMGGLT+PC ED F  +T  L  Q
Sbjct: 53  FQDLLSQAEEEFGYDHPMGGLTIPCSEDLFQHITSCLSAQ 92

Vigna radiata var. radiata (taxid: 3916)

>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1

 Score =  100 bits (248), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 50/98 (51%), Positives = 65/98 (66%), Gaps = 16/98 (16%)

Query: 1  MGIRLPSVIQNAKQILKKHNNHALSRNQPAEVPKGHIAVYVGEMERKRFVVPISYLNHPL 60
          MG RLP + + +K                A+ PKG++AVYVGE + KRFV+P+SYLN P 
Sbjct: 1  MGFRLPGIRKASKA---------------ADAPKGYLAVYVGE-KLKRFVIPVSYLNQPS 44

Query: 61 FADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDLTYRLH 98
          F DLL +AEEEFG++HPMGGLT+PC ED F  +T  L+
Sbjct: 45 FQDLLSQAEEEFGYDHPMGGLTIPCSEDVFQCITSCLN 82

Glycine max (taxid: 3847)

>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1

 Score = 99.0 bits (245), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 46/99 (46%), Positives = 69/99 (69%), Gaps = 7/99 (7%)

Query: 1  MGIRLPSVIQNAKQILKKHNNHALSRNQPAEVPKGHIAVYVGEMERKRFVVPISYLNHPL 60
          MG R+  +++        +   A S+    +VPKG+ AVYVG+  R RF +P+SYLN P 
Sbjct: 1  MGFRIAGIVRRTS----FYTTQAASKR--VDVPKGYAAVYVGDKMR-RFTIPVSYLNEPS 53

Query: 61 FADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDLTYRLHK 99
          F +LL +AEEEFG++HPMGGLT+PCKE++F+++T  L++
Sbjct: 54 FQELLSQAEEEFGYDHPMGGLTIPCKEEEFLNVTAHLNE 92

Glycine max (taxid: 3847)

>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1

 Score = 95.5 bits (236), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 48/98 (48%), Positives = 65/98 (66%), Gaps = 16/98 (16%)

Query: 1  MGIRLPSVIQNAKQILKKHNNHALSRNQPAEVPKGHIAVYVGEMERKRFVVPISYLNHPL 60
          MG RLP +        +K +N         + PKG++AVYVGE + KRFV+P+SY+N P 
Sbjct: 1  MGFRLPGI--------RKASNAV-------DAPKGYLAVYVGE-KMKRFVIPVSYMNQPS 44

Query: 61 FADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDLTYRLH 98
          F DLL +AEEEFG++HPMGGLT+PC E+ F  +T  L+
Sbjct: 45 FQDLLTQAEEEFGYDHPMGGLTIPCSEEVFQRITCCLN 82

Glycine max (taxid: 3847)

>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1

 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 49/98 (50%), Positives = 64/98 (65%), Gaps = 8/98 (8%)

Query: 1  MGIRLPSVIQNAKQILKKHNNHALSRNQPAEVPKGHIAVYVGEMERKRFVVPISYLNHPL 60
          MG RLP        I K   +   + ++  +V KG++AVYVGE  R RFV+P+SYLN P 
Sbjct: 1  MGFRLPG-------IRKASFSANQASSKAVDVEKGYLAVYVGEKMR-RFVIPVSYLNKPS 52

Query: 61 FADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDLTYRLH 98
          F DLL +AEEEFG++HP GGLT+PC ED F  +T  L+
Sbjct: 53 FQDLLSQAEEEFGYHHPNGGLTIPCSEDVFQHITSFLN 90

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
449518495	97	PREDICTED: auxin-induced protein X10A-li	0.940	0.979	0.693	2e-33
449458554	206	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.940	0.461	0.693	2e-33
225427874	100	PREDICTED: auxin-induced protein X10A [V	0.940	0.95	0.744	2e-33
449458558	92	PREDICTED: auxin-induced protein X10A-li	0.910	1.0	0.69	2e-33
225430947	97	PREDICTED: auxin-induced protein 15A [Vi	0.930	0.969	0.711	3e-33
449458544	198	PREDICTED: uncharacterized protein LOC10	0.940	0.479	0.673	2e-32
449516373	199	PREDICTED: uncharacterized LOC101210944	0.960	0.487	0.66	2e-32
449458542	97	PREDICTED: auxin-induced protein 10A5-li	0.960	1.0	0.66	2e-32
449458550	97	PREDICTED: auxin-induced protein X10A-li	0.940	0.979	0.673	2e-32
449518493	97	PREDICTED: auxin-induced protein X10A-li	0.940	0.979	0.693	3e-32

>gi|449518495|ref|XP_004166277.1| PREDICTED: auxin-induced protein X10A-like [Cucumis sativus]

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/98 (69%), Positives = 81/98 (82%), Gaps = 3/98 (3%)

Query: 1  MGIRLPSVIQNAKQILKKHNNHALSRNQPAEVPKGHIAVYVGEMERKRFVVPISYLNHPL 60
          MGIRLPS++ NAKQ+LK     A+S    ++VPKGHIAVYVGE++RKRFVVPISYL HP 
Sbjct: 1  MGIRLPSILLNAKQVLKMQ---AMSARNQSDVPKGHIAVYVGEIQRKRFVVPISYLKHPS 57

Query: 61 FADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDLTYRLH 98
          F DLL ++EEEFGF HPMGGLT+PC+ED FI+LT RLH
Sbjct: 58 FVDLLNRSEEEFGFCHPMGGLTIPCREDAFINLTARLH 95

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458554|ref|XP_004147012.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101212166 [Cucumis sativus]

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/98 (69%), Positives = 81/98 (82%), Gaps = 3/98 (3%)

Query: 1  MGIRLPSVIQNAKQILKKHNNHALSRNQPAEVPKGHIAVYVGEMERKRFVVPISYLNHPL 60
          MGIRLPS++ NAKQ+LK     A+S    ++VPKGHIAVYVGE++RKRFVVPISYL HP 
Sbjct: 1  MGIRLPSILLNAKQVLKMQ---AMSARNQSDVPKGHIAVYVGEIQRKRFVVPISYLKHPS 57

Query: 61 FADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDLTYRLH 98
          F DLL ++EEEFGF HPMGGLT+PC+ED FI+LT RLH
Sbjct: 58 FVDLLNRSEEEFGFCHPMGGLTIPCREDAFINLTARLH 95

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427874|ref|XP_002276412.1| PREDICTED: auxin-induced protein X10A [Vitis vinifera] gi|147804677|emb|CAN62605.1| hypothetical protein VITISV_016866 [Vitis vinifera]

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/98 (74%), Positives = 82/98 (83%), Gaps = 3/98 (3%)

Query: 1  MGIRLPSVIQNAKQILKKHNNHALSRNQPAEVPKGHIAVYVGEMERKRFVVPISYLNHPL 60
          MGIRLPS I NAKQILK  +   LSRNQ + VPKGH AVYVGE+++KRFVVPISYLNHP 
Sbjct: 1  MGIRLPSKIHNAKQILKLQS--LLSRNQ-SSVPKGHCAVYVGEIQKKRFVVPISYLNHPA 57

Query: 61 FADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDLTYRLH 98
          F DLL  AEEEFGF+HPMGGLT+PC+ED FIDLT RL+
Sbjct: 58 FQDLLHLAEEEFGFDHPMGGLTIPCEEDAFIDLTSRLN 95

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458558|ref|XP_004147014.1| PREDICTED: auxin-induced protein X10A-like [Cucumis sativus] gi|449518497|ref|XP_004166278.1| PREDICTED: auxin-induced protein X10A-like [Cucumis sativus]

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 69/100 (69%), Positives = 81/100 (81%), Gaps = 8/100 (8%)

Query: 1   MGIRLPSVIQNAKQILKKHNNHALSRNQPAEVPKGHIAVYVGEMERKRFVVPISYLNHPL 60
           MGIRLPS++ NAKQILKKH           +VPKGHIAVYVG+++RKRF+VPISYLNHP 
Sbjct: 1   MGIRLPSLLLNAKQILKKHVQF--------DVPKGHIAVYVGDIQRKRFLVPISYLNHPT 52

Query: 61  FADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDLTYRLHKQ 100
           F  LLK+AEEEFG+NHPMGGLT+PC+ED F+DLT RLH  
Sbjct: 53  FMALLKRAEEEFGYNHPMGGLTIPCREDAFMDLTSRLHSS 92

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430947|ref|XP_002271427.1| PREDICTED: auxin-induced protein 15A [Vitis vinifera]

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 69/97 (71%), Positives = 81/97 (83%), Gaps = 3/97 (3%)

Query: 1  MGIRLPSVIQNAKQILKKHNNHALSRNQPAEVPKGHIAVYVGEMERKRFVVPISYLNHPL 60
          MGIRLPSVI NAKQILK  + H  S+   ++VPKGH AVYVGE+++KRFVVPISYLNHP 
Sbjct: 1  MGIRLPSVISNAKQILKLQSVHIRSQ---SDVPKGHFAVYVGEIQKKRFVVPISYLNHPS 57

Query: 61 FADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDLTYRL 97
          F DLL++AEEEFGFNH MGGLT+PCKE+ FIDL  +L
Sbjct: 58 FQDLLQQAEEEFGFNHSMGGLTIPCKEETFIDLASQL 94

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458544|ref|XP_004147007.1| PREDICTED: uncharacterized protein LOC101210944 [Cucumis sativus]

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/98 (67%), Positives = 79/98 (80%), Gaps = 3/98 (3%)

Query: 1   MGIRLPSVIQNAKQILKKHNNHALSRNQPAEVPKGHIAVYVGEMERKRFVVPISYLNHPL 60
           MGIR+PS++ NAKQI +     ++S    + +PKGHIAVYVGE+ERKRFVVP+SYLNHP 
Sbjct: 102 MGIRMPSLLLNAKQIFR---TQSISTRCHSNIPKGHIAVYVGEIERKRFVVPVSYLNHPT 158

Query: 61  FADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDLTYRLH 98
           F  LL +AEEEFGFNHP GGLT+PCKED FIDLT +LH
Sbjct: 159 FLSLLNRAEEEFGFNHPSGGLTIPCKEDAFIDLTSKLH 196

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516373|ref|XP_004165221.1| PREDICTED: uncharacterized LOC101210944 [Cucumis sativus]

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/100 (66%), Positives = 79/100 (79%), Gaps = 3/100 (3%)

Query: 1   MGIRLPSVIQNAKQILKKHNNHALSRNQPAEVPKGHIAVYVGEMERKRFVVPISYLNHPL 60
           MGIR+PS++ NAKQI +     ++S    + +PKGHIAVYVGE+ERKRFVVP+SYLNHP 
Sbjct: 1   MGIRMPSLLLNAKQIFRMQ---SVSTRCHSNIPKGHIAVYVGEIERKRFVVPVSYLNHPT 57

Query: 61  FADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDLTYRLHKQ 100
           F  LL +AEEEFGFNHP GGLT+PCKED FIDLT +LH  
Sbjct: 58  FLSLLNRAEEEFGFNHPSGGLTIPCKEDAFIDLTSKLHTS 97

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458542|ref|XP_004147006.1| PREDICTED: auxin-induced protein 10A5-like [Cucumis sativus]

 Score =  142 bits (358), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/100 (66%), Positives = 81/100 (81%), Gaps = 3/100 (3%)

Query: 1   MGIRLPSVIQNAKQILKKHNNHALSRNQPAEVPKGHIAVYVGEMERKRFVVPISYLNHPL 60
           MGIRLPS++ + KQILK      +S    +++PKGHIAVYVGE++ KRFVVPIS+LNHP 
Sbjct: 1   MGIRLPSILLHTKQILKIQ---GVSTKVKSDIPKGHIAVYVGEIQTKRFVVPISFLNHPS 57

Query: 61  FADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDLTYRLHKQ 100
           F +LLK+AEEEFGFNHPMGGLT+PC+E+ FIDLT RLH  
Sbjct: 58  FLNLLKRAEEEFGFNHPMGGLTIPCREETFIDLTSRLHTS 97

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458550|ref|XP_004147010.1| PREDICTED: auxin-induced protein X10A-like [Cucumis sativus] gi|449516379|ref|XP_004165224.1| PREDICTED: auxin-induced protein X10A-like [Cucumis sativus]

 Score =  142 bits (358), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/98 (67%), Positives = 81/98 (82%), Gaps = 3/98 (3%)

Query: 1  MGIRLPSVIQNAKQILKKHNNHALSRNQPAEVPKGHIAVYVGEMERKRFVVPISYLNHPL 60
          MG RLPS++ +AKQILK     ++S    + VPKGHIAVYVGE+++KRF+VPISYLNHP 
Sbjct: 1  MGFRLPSILFSAKQILKAQ---SISGRCQSSVPKGHIAVYVGEIQKKRFLVPISYLNHPS 57

Query: 61 FADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDLTYRLH 98
          F DLL++AEEEFGFNHP GGLT+PCKE+ FID+T RLH
Sbjct: 58 FLDLLRRAEEEFGFNHPTGGLTIPCKEEAFIDVTSRLH 95

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518493|ref|XP_004166276.1| PREDICTED: auxin-induced protein X10A-like [Cucumis sativus]

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/98 (69%), Positives = 79/98 (80%), Gaps = 3/98 (3%)

Query: 1  MGIRLPSVIQNAKQILKKHNNHALSRNQPAEVPKGHIAVYVGEMERKRFVVPISYLNHPL 60
          MGIRLPS++ NAKQILK     A+S     +VPKGHIAVYVGE++RKRFVVPISYL HP 
Sbjct: 1  MGIRLPSILLNAKQILKMQ---AMSARNQFDVPKGHIAVYVGEIQRKRFVVPISYLKHPS 57

Query: 61 FADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDLTYRLH 98
          F DLL ++EEEFGF HP GGLT+PC+ED FI+LT RLH
Sbjct: 58 FVDLLNRSEEEFGFCHPRGGLTIPCREDAFINLTARLH 95

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
TAIR|locus:2141772	99	AT4G38840 "AT4G38840" [Arabido	0.970	0.989	0.585	2.8e-27
TAIR|locus:2047007	98	AT2G21210 "AT2G21210" [Arabido	0.920	0.948	0.602	1.2e-26
TAIR|locus:2116895	105	AT4G34810 "AT4G34810" [Arabido	0.920	0.885	0.575	2.2e-25
TAIR|locus:2116875	108	AT4G34790 "AT4G34790" [Arabido	0.960	0.898	0.541	6.8e-24
TAIR|locus:2116885	94	AT4G34800 "AT4G34800" [Arabido	0.811	0.872	0.621	6.8e-24
TAIR|locus:2116860	104	AT4G34770 [Arabidopsis thalian	0.910	0.884	0.591	7.8e-23
TAIR|locus:2161518	90	SAUR23 "AT5G18060" [Arabidopsi	0.742	0.833	0.636	2.6e-22
TAIR|locus:2161558	88	AT5G18030 "AT5G18030" [Arabido	0.732	0.840	0.621	5.5e-22
TAIR|locus:2161543	91	SAUR20 "AT5G18020" [Arabidopsi	0.752	0.835	0.615	1.1e-21
TAIR|locus:2172299	90	SAUR24 "AT5G18080" [Arabidopsi	0.732	0.822	0.631	1.1e-21

TAIR|locus:2141772 AT4G38840 "AT4G38840" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 58/99 (58%), Positives = 77/99 (77%)

Query:     1 MGIRLPSVIQNAKQILKKHNNHALSRNQPA-EVPKGHIAVYVGEMERKRFVVPISYLNHP 59
             M IR+P V+Q++KQIL++    + S +  + +VPKG++AVYVGE   KRFVVP+SYL+ P
Sbjct:     1 MAIRIPRVLQSSKQILRQAKLLSSSSSSSSLDVPKGYLAVYVGEQNMKRFVVPVSYLDQP 60

Query:    60 LFADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDLTYRLH 98
              F DLL+KAEEEFGF+HPMGGLT+PC E+ FIDL  R +
Sbjct:    61 SFQDLLRKAEEEFGFDHPMGGLTIPCSEEIFIDLASRFN 99

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0042742 "defense response to bacterium" evidence=RCA

TAIR|locus:2047007 AT2G21210 "AT2G21210" [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 59/98 (60%), Positives = 77/98 (78%)

Query:     1 MGIRLPSVIQNAKQILKKHNNHALSRNQPAEVPKGHIAVYVGEM-ERKRFVVPISYLNHP 59
             M IR+  V+Q++KQ+LK  ++   S N  A +PKGH+AVYVGEM +++RFVVP++YL+HP
Sbjct:     1 MAIRISRVLQSSKQLLKSLSH---SSNNVA-IPKGHLAVYVGEMMQKRRFVVPVTYLSHP 56

Query:    60 LFADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDLTYRL 97
              F  LL+KAEEEFGF+HPMGGLT+PC E  FIDL  RL
Sbjct:    57 CFQKLLRKAEEEFGFDHPMGGLTIPCTEQIFIDLASRL 94

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0010200 "response to chitin" evidence=IEP

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

TAIR|locus:2116895 AT4G34810 "AT4G34810" [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 57/99 (57%), Positives = 72/99 (72%)

Query:     1 MGIRLPSVIQNAKQILKKH---NNHALSRNQPAEVPKGHIAVYVGE---MERKRFVVPIS 54
             MG+   ++    KQILK +   N +  S +    VPKGH+AVYVGE   ME+KRFVVPIS
Sbjct:     1 MGLSRFAISNATKQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPIS 60

Query:    55 YLNHPLFADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDL 93
             +LNHP F + L +AEEEFGFNHPMGGLT+PC+E+ F+DL
Sbjct:    61 FLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDL 99

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2116875 AT4G34790 "AT4G34790" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 59/109 (54%), Positives = 79/109 (72%)

Query:     1 MGIRLPSVIQNAKQILK----KHNNHALSRNQPAE----VPKGHIAVYVGE-MERKRFVV 51
             MG+ + S++ NAKQI K    ++ N + S +        VPKGH+AVYVGE ME+KRFVV
Sbjct:     1 MGL-MRSMLPNAKQIFKSQSMRNKNGSSSPSTTTTTSGLVPKGHVAVYVGEQMEKKRFVV 59

Query:    52 PISYLNHPLFADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDL--TYRLH 98
             PISYLNHPLF + L +AEEE GF+H MGGLT+PC+E+ F+ L  +++LH
Sbjct:    60 PISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLYLITSHQLH 108

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2116885 AT4G34800 "AT4G34800" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 59/95 (62%), Positives = 70/95 (73%)

Query:     1 MGIRLPSVIQNAKQILKKHNNHALSRNQPAEVPKGHIAVYVGE-ME-RKRFVVPISYLNH 58
             M IRL  VI N+KQ          S+ Q + VPKGH+AVYVGE ME +KRFVVPISYLNH
Sbjct:     1 MAIRLSRVI-NSKQ----------SQKQQSRVPKGHVAVYVGEEMESKKRFVVPISYLNH 49

Query:    59 PLFADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDL 93
             P F  LL +AEEEFGFNHP+GGLT+PC+E+ F+ L
Sbjct:    50 PSFQGLLSRAEEEFGFNHPIGGLTIPCREETFVGL 84

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2116860 AT4G34770 [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 58/98 (59%), Positives = 69/98 (70%)

Query:     1 MGIRLPSVIQNAKQILKKHNN----HALSRNQPAEVPKGHIAVYVGEM-ERKRFVVPISY 55
             MGI+L  + Q AKQ L++  +      L+ +    VPKGH+AVYVGE   RKRFV+PISY
Sbjct:     1 MGIQLIGLSQ-AKQKLQRSLSARIASLLATSGTNNVPKGHVAVYVGETYHRKRFVIPISY 59

Query:    56 LNHPLFADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDL 93
             LNHPLF  LL  AEEEFGF+HPMGGLT+PC ED F  L
Sbjct:    60 LNHPLFQGLLNLAEEEFGFDHPMGGLTIPCTEDYFTAL 97

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161518 SAUR23 "AT5G18060" [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 49/77 (63%), Positives = 61/77 (79%)

Query:    24 LSRNQPA--EVPKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGL 81
             LSR+  A    PKG +AVYVGE ++KR++VP+SYLN P F  LL K+EEEFGF+HPMGGL
Sbjct:    14 LSRSAAAVSAPPKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEEEFGFDHPMGGL 73

Query:    82 TVPCKEDDFIDLTYRLH 98
             T+PC ED FI++T RLH
Sbjct:    74 TIPCPEDTFINVTSRLH 90

GO:0003674 "molecular_function" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161558 AT5G18030 "AT5G18030" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 46/74 (62%), Positives = 60/74 (81%)

Query:    24 LSRNQPAEVPKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTV 83
             LSR+  +  PKG +AVYVGE ++KR++VP+SYL+ P F  LL K+EEEFGF+HPMGGLT+
Sbjct:    14 LSRSTASAAPKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEEEFGFDHPMGGLTI 73

Query:    84 PCKEDDFIDLTYRL 97
             PC ED FI++T RL
Sbjct:    74 PCPEDTFINVTSRL 87

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161543 SAUR20 "AT5G18020" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 48/78 (61%), Positives = 60/78 (76%)

Query:    24 LSRNQPAE--VPKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGL 81
             LSR+  A    PKG +AVYVGE ++KR++VPISYLN P F  LL K+EEEFGF+HPMGGL
Sbjct:    14 LSRSTTAASAAPKGFLAVYVGESQKKRYLVPISYLNQPSFQALLSKSEEEFGFDHPMGGL 73

Query:    82 TVPCKEDDFIDLTYRLHK 99
             T+PC ED FI++T R  +
Sbjct:    74 TIPCPEDTFINVTSRFQR 91

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2172299 SAUR24 "AT5G18080" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 48/76 (63%), Positives = 60/76 (78%)

Query:    24 LSRNQPA--EVPKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGL 81
             LSR+  A    PKG +AVYVGE ++KR++VP+SYLN P F  LL K+EEEFGF+HPMGGL
Sbjct:    14 LSRSTGAGSAAPKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSKSEEEFGFDHPMGGL 73

Query:    82 TVPCKEDDFIDLTYRL 97
             T+PC ED FI++T RL
Sbjct:    74 TIPCPEDTFINVTSRL 89

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P32295	ARG7_VIGRR	No assigned EC number	0.51	0.9108	1.0	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	101
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	4e-40
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	3e-34
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	7e-31
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	3e-28

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score =  127 bits (322), Expect = 4e-40
 Identities = 52/100 (52%), Positives = 63/100 (63%), Gaps = 5/100 (5%)

Query: 1  MGIRLPSVIQNAKQILKKHNNHAL---SRNQPAEVPKGHIAVYVGEMERKRFVVPISYLN 57
          M  RL       K IL   +  +    S++  A+VPKGH AVYVGE E +RFVVPISYLN
Sbjct: 1  MASRLKKASSAKKWILSAASGRSRGSSSKSSSADVPKGHFAVYVGE-ETRRFVVPISYLN 59

Query: 58 HPLFADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDLTYRL 97
          HPLF +LL +AEEEFGF+   GGLT+PC    F  L + L
Sbjct: 60 HPLFQELLDRAEEEFGFDQ-DGGLTIPCDVVVFEHLLWML 98

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score =  113 bits (283), Expect = 3e-34
 Identities = 57/99 (57%), Positives = 72/99 (72%), Gaps = 6/99 (6%)

Query: 1  MGIRLPSVIQNAKQILKKH---NNHALSRNQPAEVPKGHIAVYVGE---MERKRFVVPIS 54
          MG+   ++    KQILK +   N +  S +    VPKGH+AVYVGE   ME+KRFVVPIS
Sbjct: 1  MGLSRFAISNATKQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPIS 60

Query: 55 YLNHPLFADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDL 93
          +LNHP F + L +AEEEFGFNHPMGGLT+PC+E+ F+DL
Sbjct: 61 FLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDL 99

Length = 105

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score =  104 bits (261), Expect = 7e-31
 Identities = 58/109 (53%), Positives = 77/109 (70%), Gaps = 12/109 (11%)

Query: 1   MGIRLPSVIQNAKQILKKHN--------NHALSRNQPAEVPKGHIAVYVGE-MERKRFVV 51
           MG+ + S++ NAKQI K  +        + + S      VPKGH+AVYVGE ME+KRFVV
Sbjct: 1   MGL-MRSMLPNAKQIFKSQSMRNKNGSSSPSSSTTTSGLVPKGHVAVYVGEQMEKKRFVV 59

Query: 52  PISYLNHPLFADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDL--TYRLH 98
           PISYLNHPLF + L +AEEE GF+H MGGLT+PC+E+ F+ L  +++LH
Sbjct: 60  PISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLHLITSHQLH 108

Length = 108

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score = 97.9 bits (244), Expect = 3e-28
 Identities = 48/92 (52%), Positives = 62/92 (67%), Gaps = 11/92 (11%)

Query: 13  KQILKKHNNHALSRNQ-------PAEVPKGHIAVYVGEMERKRFVVPISYLNHPLFADLL 65
           KQILK+ +  +L + Q       P +VPKGH  VYVGE  R R++VPIS+L HP F  LL
Sbjct: 16  KQILKRCS--SLGKKQGYDEDGLPLDVPKGHFPVYVGE-NRSRYIVPISFLTHPEFQSLL 72

Query: 66  KKAEEEFGFNHPMGGLTVPCKEDDFIDLTYRL 97
           ++AEEEFGF+H M GLT+PC+E  F  LT  +
Sbjct: 73  QQAEEEFGFDHDM-GLTIPCEEVVFRSLTSMI 103

Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	101
PLN03090	104	auxin-responsive family protein; Provisional	100.0
PLN03220	105	uncharacterized protein; Provisional	100.0
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	100.0
PLN03219	108	uncharacterized protein; Provisional	100.0
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	89.04
PRK02899	197	adaptor protein; Provisional	80.9
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	80.25

>PLN03090 auxin-responsive family protein; Provisional

Probab=100.00  E-value=3.6e-40  Score=228.76  Aligned_cols=85  Identities=53%  Similarity=0.914  Sum_probs=80.4

Q ss_pred             HHHHHHHhhhhhcccCC-----CCCCCCCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEeeC
Q 047919           11 NAKQILKKHNNHALSRN-----QPAEVPKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVPC   85 (101)
Q Consensus        11 ~~k~~l~r~~s~~~~~~-----~~~~vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IPC   85 (101)
                      ++||+|+||.|.+++++     .+.++|+||||||||+ +++||+||++|||||.|++||++|||||||+|+ |+|+|||
T Consensus        14 ~~kq~l~r~~s~~~~~~~~~~~~~~~vpkG~~aVyVG~-~~~RfvVp~~~L~hP~F~~LL~~aeeEfGf~~~-G~L~IPC   91 (104)
T PLN03090         14 MLKQILKRCSSLGKKQGYDEDGLPLDVPKGHFPVYVGE-NRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHD-MGLTIPC   91 (104)
T ss_pred             HHHHHHHHHHHhcccCCcccccCCCCCCCCcEEEEECC-CCEEEEEEHHHcCCHHHHHHHHHHHHHhCCCCC-CcEEEeC
Confidence            78999999999987763     5678999999999998 899999999999999999999999999999998 8999999


Q ss_pred             cHHHHHHHHHHH
Q 047919           86 KEDDFIDLTYRL   97 (101)
Q Consensus        86 ~~~~Fe~vl~~l   97 (101)
                      +++.|++++|+|
T Consensus        92 ~~~~Fe~ll~~i  103 (104)
T PLN03090         92 EEVVFRSLTSMI  103 (104)
T ss_pred             CHHHHHHHHHHh
Confidence            999999999998

>PLN03220 uncharacterized protein; Provisional

Probab=100.00  E-value=9.5e-40  Score=226.83  Aligned_cols=96  Identities=58%  Similarity=1.018  Sum_probs=85.7

Q ss_pred             CcccchhhhHHHHHHHHhhhhhcccC---CCCCCCCCceEEEEeec---CceeEEEEeccccCchHHHHHHHHHHHHhCC
Q 047919            1 MGIRLPSVIQNAKQILKKHNNHALSR---NQPAEVPKGHIAVYVGE---MERKRFVVPISYLNHPLFADLLKKAEEEFGF   74 (101)
Q Consensus         1 ~~~~~~~~~~~~k~~l~r~~s~~~~~---~~~~~vpkG~~~VyVG~---~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~   74 (101)
                      ||+++|+|..+.||+|+|+....+..   +.+.+|||||||||||+   ++++||+||++|||||.|++||++|||||||
T Consensus         1 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf   80 (105)
T PLN03220          1 MGLSRFAISNATKQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGF   80 (105)
T ss_pred             CCcchhhhHHHHHHHHHHHhhcccccccccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCC
Confidence            99999999999999999998433332   35679999999999997   2589999999999999999999999999999


Q ss_pred             ccCCCceEeeCcHHHHHHHHHH
Q 047919           75 NHPMGGLTVPCKEDDFIDLTYR   96 (101)
Q Consensus        75 ~~~~G~L~IPC~~~~Fe~vl~~   96 (101)
                      +|++|+|+|||+++.|+++++.
T Consensus        81 ~~~~G~L~IPCd~~~F~~ll~s  102 (105)
T PLN03220         81 NHPMGGLTIPCREEVFLDLIAS  102 (105)
T ss_pred             CCCCCCEEeeCCHHHHHHHHHh
Confidence            9966999999999999999863

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=100.00  E-value=5.5e-36  Score=205.65  Aligned_cols=68  Identities=63%  Similarity=1.125  Sum_probs=65.4

Q ss_pred             CCCCCCceEEEEeecCceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEeeCcHHHHHHHHHHHh
Q 047919           29 PAEVPKGHIAVYVGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDLTYRLH   98 (101)
Q Consensus        29 ~~~vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~Fe~vl~~l~   98 (101)
                      ..++|+||||||||+ +++||+||++|||||.|++||++|||||||+++ |+|+|||+++.|++++|+|+
T Consensus        33 ~~~vp~G~~~VyVG~-~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~~-G~l~iPC~~~~Fe~~l~~le  100 (100)
T PF02519_consen   33 ESDVPKGHFAVYVGE-ERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQD-GPLTIPCDVVLFEHLLWLLE  100 (100)
T ss_pred             cCCCCCCeEEEEeCc-cceEEEechHHcCchhHHHHHHHHhhhcCcCCC-CcEEeeCCHHHHHHHHHHhC
Confidence            378999999999998 899999999999999999999999999999997 99999999999999999985

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PLN03219 uncharacterized protein; Provisional

Probab=100.00  E-value=1.1e-34  Score=202.36  Aligned_cols=69  Identities=67%  Similarity=1.216  Sum_probs=64.5

Q ss_pred             CCCCCCceEEEEeec-CceeEEEEeccccCchHHHHHHHHHHHHhCCccCCCceEeeCcHHHHHHHHHHH
Q 047919           29 PAEVPKGHIAVYVGE-MERKRFVVPISYLNHPLFADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDLTYRL   97 (101)
Q Consensus        29 ~~~vpkG~~~VyVG~-~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~Fe~vl~~l   97 (101)
                      +.++||||+|||||+ ++++||+||++|||||+|++||++|||||||+|++|+|+|||+++.|+++++.-
T Consensus        36 ~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~~~  105 (108)
T PLN03219         36 SGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLHLITSH  105 (108)
T ss_pred             CCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEEeCCHHHHHHHHHhh
Confidence            467999999999998 469999999999999999999999999999998669999999999999999863

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=89.04  E-value=0.47  Score=30.62  Aligned_cols=57  Identities=21%  Similarity=0.256  Sum_probs=42.2

Q ss_pred             EEeecCceeEEEEeccccC-ch--HHHHHHHHHHHHhCCccCCCceEeeCcHHHHHHHHHHHhh
Q 047919           39 VYVGEMERKRFVVPISYLN-HP--LFADLLKKAEEEFGFNHPMGGLTVPCKEDDFIDLTYRLHK   99 (101)
Q Consensus        39 VyVG~~~~~RfvVp~~~L~-hP--~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~Fe~vl~~l~~   99 (101)
                      +=||.   ++|.++.+.|. +|  .|..+++...... ++.+.|.+-|-++...|++|+..++.
T Consensus         3 lNVGG---~~f~~~~~tL~~~~~s~l~~~~~~~~~~~-~~~~~~~~fiDRdp~~F~~IL~ylr~   62 (94)
T PF02214_consen    3 LNVGG---TIFETSRSTLTRYPDSLLARLFSGERSDD-YDDDDGEYFIDRDPELFEYILNYLRT   62 (94)
T ss_dssp             EEETT---EEEEEEHHHHHTSTTSTTTSHHHTGHGGG-EETTTTEEEESS-HHHHHHHHHHHHH
T ss_pred             EEECC---EEEEEcHHHHhhCCCChhhhHHhhccccc-cCCccceEEeccChhhhhHHHHHHhh
Confidence            45775   89999999887 54  6888888652222 22234899999999999999998865

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>PRK02899 adaptor protein; Provisional

Probab=80.90  E-value=1.5  Score=33.16  Aligned_cols=24  Identities=38%  Similarity=0.807  Sum_probs=20.7

Q ss_pred             hHHHHHHHHHHHHhCCccCCCceEe
Q 047919           59 PLFADLLKKAEEEFGFNHPMGGLTV   83 (101)
Q Consensus        59 P~F~~LL~~aeEEfG~~~~~G~L~I   83 (101)
                      -+|.++|++|..|+||..+ |||+|
T Consensus        39 ~lF~~mm~Ea~~e~~F~~~-~pl~~   62 (197)
T PRK02899         39 QLFRDMMQEANKELGFEAD-GPIAV   62 (197)
T ss_pred             HHHHHHHHHhhhccCcccC-CeEEE
Confidence            3577789999999999977 99976

>smart00666 PB1 PB1 domain

Probab=80.25  E-value=5.9  Score=24.68  Aligned_cols=52  Identities=25%  Similarity=0.395  Sum_probs=38.7

Q ss_pred             eecCceeEEEEeccccCchHHHHHHHHHHHHhCCc----------cCCCceEeeCcHHHHHHHHHHHh
Q 047919           41 VGEMERKRFVVPISYLNHPLFADLLKKAEEEFGFN----------HPMGGLTVPCKEDDFIDLTYRLH   98 (101)
Q Consensus        41 VG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~----------~~~G~L~IPC~~~~Fe~vl~~l~   98 (101)
                      -|+ +.+||.+|-    .+.|.+|..+..+.|+..          .++..++|.|+. .+..++.+..
T Consensus         8 ~~~-~~~~~~~~~----~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd~-Dl~~a~~~~~   69 (81)
T smart00666        8 YGG-ETRRLSVPR----DISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSDE-DLEEAIEEYD   69 (81)
T ss_pred             ECC-EEEEEEECC----CCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCHH-HHHHHHHHHH
Confidence            365 789999985    778999999999999884          233478888866 5666665544

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00