Citrus Sinensis ID: 047920

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550------

MASLTFSSISRSLPQSAMMARVSDKSSSRKDIGFSLGKRDFGLTVTNVATPQRPVIAVPLPPEKEKYSVERNHVAWTSVRQERWEGELVVQGEIPLWLKGTYLRNGPGMWHIGDYNFRHLFDGYATLVKLHIENGRLIAGHRQIESEAYKAAKENKKLCYREFSEVPKPDNFLSYVGELASLFSGASLTDNANTGVVKLGDGRVVCLTETQKGSIIIDPDTLDTISRFEYSDTLGGLIHSAHPIVTESEFLTLLPDLVSPGYWVVRMEAGSNERKVIGRVNCRGGPAPGWVHSFPVTEHYVVVPEMSLRYCAQNLLRAEPTPLYKFEWHPDSKAFLHVMCKASGKIVASVEVPLYITFHFINAYEEKDEDGRLIAIIADCCEHNADTTILDKLRLNNLRSFNGQDVLPDARVGRFRIPFDGSEFGELEAALDPDEHGRGMDMCSINPAYLGKMYRYAYACGAKRPCNFPNTLTKLDLVGKKAKNWYEEGAVPSEPFFVARPGATEEDDGVVISIVSERNGEGFALLLDGSTFEEIARAKFPYGLPYGLHGCWVPKN

cccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccEEEEEccccccEEEEEEcccccccccccccccccccccEEEEEEEccEEEEEEEEcccHHHHHHHHccccccccccccccccHHHHHHHHHHHccccccccccccEEEEEEcccEEEEEEcccccEEEEccccccccccccccccccccccccccccccccEEEEEEccccccEEEEEEEcccccEEEEEEEEccccccccEEEEccccccEEEEEcccccccHHHHHHcccccccccEEcccccEEEEEEEccccccEEEEEEcccEEEEcccEEEccccccEEEEEEEEEccccccHHHHHHHHHcccccccccccccccEEEEEEEEccccccEEEEEccccccccccccccccccccccccccEEEEEccccccccccEEEEEEccccEEEEEEcccccccccEEEccccccccccEEEEEEEEcccccEEEEEEEcccccEEEEEEccccccccccccccccc

ccHHHcccccccccccccEccccccccccccccccHHHHHHHHHHHHHHHHcHHcccccccccccccccHHccccccccccccccccccEEEEccHHcccEEEEccccccEEccccccccccccEEEEEEEEcccEEEEEEEEEEcHHHHHHHHcccEEEccccccccccHHHHHHHHHHccccccccccccEEEEEEEcccEEEEEEcccccEEEEcccccccccEEccccEEEEEEEEEccccccccEEEEccccccccEEEEEEccccccEEEEEEEcccccccccEEEcccccccEEEEccccEEEcHHHHHHcccccEEEEEEcccccEEEEEEEccccccEEEEEccccEEEEEEEEEccccccccEEEEEEEcccccccccHccHHHHHHHHHcccccccccccEEEEEEEcccccccccccccccHHHccccccccccHccccccEEEEEEEEEcccccccccEEEEEEcccEEEEEEcccccccccEEEcccccccccccEEEEEEEccccccEEEEEEcccccEEEEEEEcccccccccEEEEccc

masltfssisrslpqsammarvsdksssrkdigfslgkrdfgltvtnvatpqrpviavplppekekysveRNHVAWTSVRQerwegelvvqgeiplwlkgtylrngpgmwhigdynfrHLFDGYATLVKLHIENGRLIAGHRQIESEAYKAAKENKKLCYrefsevpkpdnflSYVGELASlfsgasltdnantgvvklgdgRVVCLTetqkgsiiidpdtldtisrfeysdtlgglihsahpivtesefltllpdlvspgyWVVRMEagsnerkvigrvncrggpapgwvhsfpvtehyvvvpemSLRYCAQNllraeptplykfewhpdsKAFLHVMCKASgkivasvevplYITFHFINayeekdedgRLIAIIADCcehnadttildklrlnnlrsfngqdvlpdarvgrfripfdgsefgeleaaldpdehgrgmdmcsinpayLGKMYRYAYacgakrpcnfpntltKLDLVGKKAKnwyeegavpsepffvarpgateeddgVVISIVSERNGEGFALLLDGSTFEEIArakfpyglpyglhgcwvpkn

masltfssisrslpqsammarvsdksssrkdigfslgkrdfgltvtnvatpqrpviavplppekekysvERNHVAWtsvrqerwegelvVQGEIPLWLKGTYLRNGPGMWHIGDYNFRHLFDGYATLVKLHIENGRLIAGHRQIESEAYKAAKENKKLCYREFSEVPKPDNFLSYVGELASLFSGASLTDNANTgvvklgdgrVVCLTetqkgsiiidpdtldtISRFEYSDTLGGLIHSAHPIVTESEFLTLLPDLVSPGYWVVRMEAGSNERKVIGRVNCRGGPAPGWVHSFPVTEHYVVVPEMSLRYCAQNLLRAEPTPLYKFEWHPDSKAFLHVMCKASGKIVASVEVPLYITFHFINAYEEKDEDGRLIAIIADCCEHNADTTILDKLRLNNLRsfngqdvlpdarVGRFRIPFDGSEFGELEAAldpdehgrgMDMCSINPAYLGKMYRYAYACGAKRPCNFPNTLTKLDLVGKKAKNWYEEGAVPSEPFFVARPGATEEDDGVVISIVSERNGEGFALLLDGSTFEEIARAKFPyglpyglhgcwvpkn

*********************************FSLGKRDFGLTVTNVATPQRPVIAVPLP****KYSVERNHVAWTSVRQERWEGELVVQGEIPLWLKGTYLRNGPGMWHIGDYNFRHLFDGYATLVKLHIENGRLIAGHRQIESEAYKAAKENKKLCYREFSEVPKPDNFLSYVGELASLFSGASLTDNANTGVVKLGDGRVVCLTETQKGSIIIDPDTLDTISRFEYSDTLGGLIHSAHPIVTESEFLTLLPDLVSPGYWVVRMEAGSNERKVIGRVNCRGGPAPGWVHSFPVTEHYVVVPEMSLRYCAQNLLRAEPTPLYKFEWHPDSKAFLHVMCKASGKIVASVEVPLYITFHFINAYEEKDEDGRLIAIIADCCEHNADTTILDKLRLNNLRSFNGQDVLPDARVGRFRIPFDGSEFGELEAAL*****GRGMDMCSINPAYLGKMYRYAYACGAKRPCNFPNTLTKLDLVGKKAKNWYEEGAVPSEPFFVARPGATEEDDGVVISIVSERNGEGFALLLDGSTFEEIARAKFPYGLPYGLHGCWV***

******************************************LTVTNV******************YSVERNHVAWTSVRQERWEGELVVQGEIPLWLKGTYLRNGPGMWHIGDYNFRHLFDGYATLVKLHIENGRLIAGHRQIESEAYKAAKENKKLCYREFSEVPKPDNFLSYVGELASLFSGASLTDNANTGVVKLGDGRVVCLTETQKGSIIIDPDTLDTISRFEYSDTLGGLIHSAHPIVTESEFLTLLPDLVSPGYWVVRMEAGSNERKVIGRVNCRGGPAPGWVHSFPVTEHYVVVPEMSLRYCAQNLLRAEPTPLYKFEWHPDSKAFLHVMCKASGKIVASVEVPLYITFHFINAYEEKDEDGRLIAIIADCCEHNADTTILDKLRLNNLRSFNGQDVLPDARVGRFRIPFDGSEFGELEAALDPDEHGRGMDMCSINPAYLGKMYRYAYACGAKRPCNFPNTLTKLDLVGKKAKNWYEEGAVPSEPFFVARPGATEEDDGVVISIVSERNGEGFALLLDGSTFEEIARAKFPYGLPYGLHGCWV***

MASLTFSSISRSLP***************KDIGFSLGKRDFGLTVTNVATPQRPVIAVPLPPEKEKYSVERNHVAWTSVRQERWEGELVVQGEIPLWLKGTYLRNGPGMWHIGDYNFRHLFDGYATLVKLHIENGRLIAGHRQIESEAYKAAKENKKLCYREFSEVPKPDNFLSYVGELASLFSGASLTDNANTGVVKLGDGRVVCLTETQKGSIIIDPDTLDTISRFEYSDTLGGLIHSAHPIVTESEFLTLLPDLVSPGYWVVRMEAGSNERKVIGRVNCRGGPAPGWVHSFPVTEHYVVVPEMSLRYCAQNLLRAEPTPLYKFEWHPDSKAFLHVMCKASGKIVASVEVPLYITFHFINAYEEKDEDGRLIAIIADCCEHNADTTILDKLRLNNLRSFNGQDVLPDARVGRFRIPFDGSEFGELEAALDPDEHGRGMDMCSINPAYLGKMYRYAYACGAKRPCNFPNTLTKLDLVGKKAKNWYEEGAVPSEPFFVARPGATEEDDGVVISIVSERNGEGFALLLDGSTFEEIARAKFPYGLPYGLHGCWVPKN

********************************GFSLGKRDFGLTVTNVATPQRPVIAVPLPPEKEKYSVERNHVAWTSVRQERWEGELVVQGEIPLWLKGTYLRNGPGMWHIGDYNFRHLFDGYATLVKLHIENGRLIAGHRQIESEAYKAAKENKKLCYREFSEVPKPDNFLSYVGELASLFSGASLTDNANTGVVKLGDGRVVCLTETQKGSIIIDPDTLDTISRFEYSDTLGGLIHSAHPIVTESEFLTLLPDLVSPGYWVVRMEAGSNERKVIGRVNCRGGPAPGWVHSFPVTEHYVVVPEMSLRYCAQNLLRAEPTPLYKFEWHPDSKAFLHVMCKASGKIVASVEVPLYITFHFINAYEEKDEDGRLIAIIADCCEHNADTTILDKLRLNNLRSFNGQDVLPDARVGRFRIPFDGSEFGELEAALDPDEHGRGMDMCSINPAYLGKMYRYAYACGAKRPCNFPNTLTKLDLVGKKAKNWYEEGAVPSEPFFVARPGATEEDDGVVISIVSERNGEGFALLLDGSTFEEIARAKFPYGLPYGLHGCWVPK*

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		556	2.2.26 [Sep-21-2011]
Q8VY26		570	Carotenoid cleavage dioxy	yes	no	0.924	0.901	0.694	0.0
Q9I993		526	Beta,beta-carotene 15,15'	no	no	0.811	0.857	0.282	3e-46
Q9JJS6		566	Beta,beta-carotene 15,15'	yes	no	0.811	0.796	0.282	7e-45
Q9HAY6		547	Beta,beta-carotene 15,15'	yes	no	0.800	0.813	0.276	7e-45
Q99NF1		532	Beta,beta-carotene 9',10'	no	no	0.814	0.851	0.287	1e-44
Q8HXG8		556	Beta,beta-carotene 9',10'	N/A	no	0.811	0.811	0.285	2e-44
Q91XT5		566	Beta,beta-carotene 15,15'	no	no	0.812	0.798	0.283	6e-44
Q9YI25		533	Retinoid isomerohydrolase	N/A	no	0.812	0.848	0.291	2e-43
Q5RF16		557	Beta,beta-carotene 9',10'	yes	no	0.812	0.811	0.282	2e-43
Q9BYV7		579	Beta,beta-carotene 9',10'	no	no	0.811	0.778	0.285	9e-43

>sp\|Q8VY26\|CCD8_ARATH Carotenoid cleavage dioxygenase 8, chloroplastic OS=Arabidopsis thaliana GN=CCD8 PE=1 SV=1	Back alignment and function desciption

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/531 (69%), Positives = 431/531 (81%), Gaps = 17/531 (3%)

Query: 36  LGKRDFGLT--VTNVATPQRPVIAVPLPPEKEKYSVERN-HVAWTSVRQERWEGELVVQG 92
             +R FG+T  V N A P       PLP EKEK   ER  HVAWTSV+QE WEGEL VQG
Sbjct: 47  FARRIFGVTRAVINSAAPS------PLP-EKEKVEGERRCHVAWTSVQQENWEGELTVQG 99

Query: 93  EIPLWLKGTYLRNGPGMWHIGDYNFRHLFDGYATLVKLHIENGRLIAGHRQIESEAYKAA 152
           +IP WL GTYLRNGPG+W+IGD++FRHLFDGY+TLVKL  + GR+ A HR +ES+AYKAA
Sbjct: 100 KIPTWLNGTYLRNGPGLWNIGDHDFRHLFDGYSTLVKLQFDGGRIFAAHRLLESDAYKAA 159

Query: 153 KENKKLCYREFSEVPKP----DNFLSYVGELASLFSGASLTDNANTGVVKLGDGRVVCLT 208
           K++ +LCYREFSE PK      N  S +GE+  LFSG SLTDNANTGV+KLGDGRV+CLT
Sbjct: 160 KKHNRLCYREFSETPKSVIINKNPFSGIGEIVRLFSGESLTDNANTGVIKLGDGRVMCLT 219

Query: 209 ETQKGSIIIDPDTLDTISRFEYSDTLGG-LIHSAHPIVTESEFLTLLPDLVSPGYWVVRM 267
           ETQKGSI++D +TL+TI +FEY D L   +I SAHPIVTE+E  TL+PDLV PGY VVRM
Sbjct: 220 ETQKGSILVDHETLETIGKFEYDDVLSDHMIQSAHPIVTETEMWTLIPDLVKPGYRVVRM 279

Query: 268 EAGSNERKVIGRVNCRGGP-APGWVHSFPVTEHYVVVPEMSLRYCAQNLLRAEPTPLYKF 326
           EAGSN+R+V+GRV CR G   PGWVHSF VTE+YVV+PEM LRY  +NLLRAEPTPLYKF
Sbjct: 280 EAGSNKREVVGRVRCRSGSWGPGWVHSFAVTENYVVIPEMPLRYSVKNLLRAEPTPLYKF 339

Query: 327 EWHPDSKAFLHVMCKASGKIVASVEVPLYITFHFINAYEE-KDEDGRLIAIIADCCEHNA 385
           EW P   AF+HVM K +G++VASVEVP Y+TFHFINAYEE K+ DG+   IIADCCEHNA
Sbjct: 340 EWCPQDGAFIHVMSKLTGEVVASVEVPAYVTFHFINAYEEDKNGDGKATVIIADCCEHNA 399

Query: 386 DTTILDKLRLNNLRSFNGQDVLPDARVGRFRIPFDGSEFGELEAALDPDEHGRGMDMCSI 445
           DT ILD LRL+ LRS +G DVLPDAR+GRFRIP DGS++G+LE A++ ++HGR MDMCSI
Sbjct: 400 DTRILDMLRLDTLRSSHGHDVLPDARIGRFRIPLDGSKYGKLETAVEAEKHGRAMDMCSI 459

Query: 446 NPAYLGKMYRYAYACGAKRPCNFPNTLTKLDLVGKKAKNWYEEGAVPSEPFFVARPGATE 505
           NP YLG+ YRY YACGA+RPCNFPN L+K+D+V KK KNW+E G +PSEPFFV RPGAT 
Sbjct: 460 NPLYLGQKYRYVYACGAQRPCNFPNALSKVDIVEKKVKNWHEHGMIPSEPFFVPRPGATH 519

Query: 506 EDDGVVISIVSERNGEGFALLLDGSTFEEIARAKFPYGLPYGLHGCWVPKN 556
           EDDGVVISIVSE NG  FA+LLDGS+FEEIARAKFPYGLPYGLHGCW+PK+
Sbjct: 520 EDDGVVISIVSEENGGSFAILLDGSSFEEIARAKFPYGLPYGLHGCWIPKD 570

Cleaves the C(27) 10'-apo-beta-carotenal produced by CCD7. Produces one C(9) dialdehyde and the C(18) 13-apo-beta-carotenone required for production of a graft-transmissible inhibitor of axillary meristen development and shoot branching. Also active on other carotenoid substrates like licopene or zeaxanthin.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 9EC: 9EC: .EC: nEC: 5

>sp\|Q9I993\|BCDO1_CHICK Beta,beta-carotene 15,15'-monooxygenase OS=Gallus gallus GN=BCMO1 PE=1 SV=1	Back alignment and function description

>sp\|Q9JJS6\|BCDO1_MOUSE Beta,beta-carotene 15,15'-monooxygenase OS=Mus musculus GN=Bcmo1 PE=1 SV=2	Back alignment and function description

>sp\|Q9HAY6\|BCDO1_HUMAN Beta,beta-carotene 15,15'-monooxygenase OS=Homo sapiens GN=BCMO1 PE=1 SV=1	Back alignment and function description

>sp\|Q99NF1\|BCDO2_MOUSE Beta,beta-carotene 9',10'-oxygenase OS=Mus musculus GN=Bco2 PE=1 SV=1	Back alignment and function description

>sp\|Q8HXG8\|BCDO2_MACFA Beta,beta-carotene 9',10'-oxygenase OS=Macaca fascicularis GN=BCO2 PE=2 SV=2	Back alignment and function description

>sp\|Q91XT5\|BCDO1_RAT Beta,beta-carotene 15,15'-monooxygenase OS=Rattus norvegicus GN=Bcmo1 PE=2 SV=1	Back alignment and function description

>sp\|Q9YI25\|RPE65_AMBTI Retinoid isomerohydrolase OS=Ambystoma tigrinum GN=RPE65 PE=2 SV=3	Back alignment and function description

>sp\|Q5RF16\|BCDO2_PONAB Beta,beta-carotene 9',10'-oxygenase OS=Pongo abelii GN=BCO2 PE=2 SV=1	Back alignment and function description

>sp\|Q9BYV7\|BCDO2_HUMAN Beta,beta-carotene 9',10'-oxygenase OS=Homo sapiens GN=BCO2 PE=1 SV=5	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		556
224092286		557	predicted protein [Populus trichocarpa]	0.985	0.983	0.813	0.0
296081847		563	unnamed protein product [Vitis vinifera]	0.992	0.980	0.819	0.0
225429936		546	PREDICTED: carotenoid cleavage dioxygena	0.958	0.976	0.834	0.0
224142963		538	predicted protein [Populus trichocarpa]	0.951	0.983	0.813	0.0
356507925		549	PREDICTED: carotenoid cleavage dioxygena	0.926	0.938	0.833	0.0
310896477		556	carotenoid cleavage dioxygenase 8 [Actin	0.987	0.987	0.786	0.0
336044429		557	carotenoid cleavage dioxygenase 8 [Solan	0.902	0.901	0.849	0.0
357466651		565	Dioxygenase RAMOSUS1 [Medicago truncatul	0.967	0.952	0.790	0.0
57116144		556	Dad1/CCD8 [Petunia x hybrida]	0.913	0.913	0.835	0.0
57918684		556	decreased apical dominance protein [Petu	0.915	0.915	0.832	0.0

>gi\|224092286\|ref\|XP_002309543.1\| predicted protein [Populus trichocarpa] gi\|222855519\|gb\|EEE93066.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  947 bits (2447), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/563 (81%), Positives = 502/563 (89%), Gaps = 15/563 (2%)

Query: 1   MASLTFS-SISRSLPQSAMMARVSDKSSSRKDIGFSLGKRDFGL-------TVTNVATPQ 52
           MASL FS SI RS+  S  M  VSDK  SR++ GFSLGK  F          V  VAT Q
Sbjct: 1   MASLAFSASIGRSISPSNAM--VSDKFESRRE-GFSLGKGTFARKRDPRDSMVPKVAT-Q 56

Query: 53  RPVIAVPLPPEKEKYSVERNHVAWTSVRQERWEGELVVQGEIPLWLKGTYLRNGPGMWHI 112
            P +    P  +++ + +RNHVAWTSV+QER+EGEL VQGEIPLWL GTYLRNGPGMWH+
Sbjct: 57  APTV---FPSLEKELAGDRNHVAWTSVQQERYEGELDVQGEIPLWLSGTYLRNGPGMWHV 113

Query: 113 GDYNFRHLFDGYATLVKLHIENGRLIAGHRQIESEAYKAAKENKKLCYREFSEVPKPDNF 172
           GDYNFRHLFDGYATLV+LH ENGRLIA HRQIESEAYKAAK N KLCYREFSEVPKPDNF
Sbjct: 114 GDYNFRHLFDGYATLVRLHFENGRLIAAHRQIESEAYKAAKTNNKLCYREFSEVPKPDNF 173

Query: 173 LSYVGELASLFSGASLTDNANTGVVKLGDGRVVCLTETQKGSIIIDPDTLDTISRFEYSD 232
           LSYVGEL +LFSGASLTDNANTGVVKLGDGRVVCLTETQKGSI++DP+TLDT+ +FEYSD
Sbjct: 174 LSYVGELVNLFSGASLTDNANTGVVKLGDGRVVCLTETQKGSIVVDPNTLDTLGKFEYSD 233

Query: 233 TLGGLIHSAHPIVTESEFLTLLPDLVSPGYWVVRMEAGSNERKVIGRVNCRGGPAPGWVH 292
           +LGGLIHSAHPIVT++EFLTLLPDL  PGY VVRME GSNERKVIGRV+CRGGPAPGWVH
Sbjct: 234 SLGGLIHSAHPIVTDTEFLTLLPDLFRPGYLVVRMEPGSNERKVIGRVDCRGGPAPGWVH 293

Query: 293 SFPVTEHYVVVPEMSLRYCAQNLLRAEPTPLYKFEWHPDSKAFLHVMCKASGKIVASVEV 352
           SFPVTEHYV+VPEM LRYCAQNLLRAEPTPLYKFEWHPDSK F+HVMCKASGKIVASVEV
Sbjct: 294 SFPVTEHYVIVPEMPLRYCAQNLLRAEPTPLYKFEWHPDSKGFMHVMCKASGKIVASVEV 353

Query: 353 PLYITFHFINAYEEKDEDGRLIAIIADCCEHNADTTILDKLRLNNLRSFNGQDVLPDARV 412
           PL++TFHFINAYEEKDEDGR+ A+IADCCEHN+DTTIL+KL L NLRSF G+DVLPDARV
Sbjct: 354 PLFVTFHFINAYEEKDEDGRVTAVIADCCEHNSDTTILEKLSLQNLRSFMGEDVLPDARV 413

Query: 413 GRFRIPFDGSEFGELEAALDPDEHGRGMDMCSINPAYLGKMYRYAYACGAKRPCNFPNTL 472
           GRF IP DGS +G+LEAALDP+EHG+GMDMCSINPAYLGK YRYAYACGA+RPCNFPNTL
Sbjct: 414 GRFIIPLDGSPYGKLEAALDPEEHGKGMDMCSINPAYLGKKYRYAYACGAQRPCNFPNTL 473

Query: 473 TKLDLVGKKAKNWYEEGAVPSEPFFVARPGATEEDDGVVISIVSERNGEGFALLLDGSTF 532
           TK+DL+ KKAKNWYEEGAVPSEPFFVARPGATEEDDGVVIS++SE+NG+G+ALLLDGSTF
Sbjct: 474 TKIDLLEKKAKNWYEEGAVPSEPFFVARPGATEEDDGVVISMISEKNGDGYALLLDGSTF 533

Query: 533 EEIARAKFPYGLPYGLHGCWVPK 555
           EEIAR KFPYGLPYGLHGCWVPK
Sbjct: 534 EEIARGKFPYGLPYGLHGCWVPK 556

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|296081847\|emb\|CBI20852.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225429936\|ref\|XP_002281239.1\| PREDICTED: carotenoid cleavage dioxygenase 8, chloroplastic-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224142963\|ref\|XP_002324797.1\| predicted protein [Populus trichocarpa] gi\|222866231\|gb\|EEF03362.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356507925\|ref\|XP_003522713.1\| PREDICTED: carotenoid cleavage dioxygenase 8, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

>gi\|310896477\|gb\|ADP37984.1\| carotenoid cleavage dioxygenase 8 [Actinidia chinensis]	Back alignment and taxonomy information

>gi\|336044429\|gb\|AEH96363.1\| carotenoid cleavage dioxygenase 8 [Solanum lycopersicum]	Back alignment and taxonomy information

>gi\|357466651\|ref\|XP_003603610.1\| Dioxygenase RAMOSUS1 [Medicago truncatula] gi\|355492658\|gb\|AES73861.1\| Dioxygenase RAMOSUS1 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|57116144\|gb\|AAW33596.1\| Dad1/CCD8 [Petunia x hybrida]	Back alignment and taxonomy information

>gi\|57918684\|gb\|AAW59435.1\| decreased apical dominance protein [Petunia x hybrida]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		556
TAIR\|locus:2134093		570	CCD8 "carotenoid cleavage diox	0.920	0.898	0.697	6.2e-204
ZFIN\|ZDB-GENE-060421-7448		555	bco2b "beta-carotene oxygenase	0.535	0.536	0.308	1.4e-47
ZFIN\|ZDB-GENE-010509-1		549	bco2l "beta-carotene 15, 15-di	0.552	0.559	0.275	1.2e-45
UNIPROTKB\|E1C8E0		548	BCO2 "Uncharacterized protein"	0.548	0.556	0.255	4.5e-44
FB\|FBgn0002937		620	ninaB "neither inactivation no	0.510	0.458	0.299	4.2e-43
MGI\|MGI:2177469		532	Bco2 "beta-carotene oxygenase	0.579	0.605	0.271	5.5e-42
UNIPROTKB\|Q8HXG8		556	BCO2 "Beta,beta-carotene 9',10	0.539	0.539	0.273	1.1e-41
UNIPROTKB\|F1SM94		575	BCO2 "Uncharacterized protein"	0.541	0.523	0.268	1.6e-41
UNIPROTKB\|Q9I993		526	BCMO1 "Beta,beta-carotene 15,1	0.402	0.425	0.32	3.8e-41
UNIPROTKB\|E2RS36		575	BCO2 "Uncharacterized protein"	0.566	0.547	0.267	3.5e-40

TAIR\|locus:2134093 CCD8 "carotenoid cleavage dioxygenase 8" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1973 (699.6 bits), Expect = 6.2e-204, P = 6.2e-204
 Identities = 369/529 (69%), Positives = 431/529 (81%)

Query:    38 KRDFGLT--VTNVATPQRPVIAVPLPPEKEKYSVERN-HVAWTSVRQERWEGELVVQGEI 94
             +R FG+T  V N A P       PLP EKEK   ER  HVAWTSV+QE WEGEL VQG+I
Sbjct:    49 RRIFGVTRAVINSAAPS------PLP-EKEKVEGERRCHVAWTSVQQENWEGELTVQGKI 101

Query:    95 PLWLKGTYLRNGPGMWHIGDYNFRHLFDGYATLVKLHIENGRLIAGHRQIESEAYKAAKE 154
             P WL GTYLRNGPG+W+IGD++FRHLFDGY+TLVKL  + GR+ A HR +ES+AYKAAK+
Sbjct:   102 PTWLNGTYLRNGPGLWNIGDHDFRHLFDGYSTLVKLQFDGGRIFAAHRLLESDAYKAAKK 161

Query:   155 NKKLCYREFSEVPKP----DNFLSYVGELASLFSGASLTDNANTGVVKLGDGRVVCLTET 210
             + +LCYREFSE PK      N  S +GE+  LFSG SLTDNANTGV+KLGDGRV+CLTET
Sbjct:   162 HNRLCYREFSETPKSVIINKNPFSGIGEIVRLFSGESLTDNANTGVIKLGDGRVMCLTET 221

Query:   211 QKGSIIIDPDTLDTISRFEYSDTLGG-LIHSAHPIVTESEFLTLLPDLVSPGYWVVRMEA 269
             QKGSI++D +TL+TI +FEY D L   +I SAHPIVTE+E  TL+PDLV PGY VVRMEA
Sbjct:   222 QKGSILVDHETLETIGKFEYDDVLSDHMIQSAHPIVTETEMWTLIPDLVKPGYRVVRMEA 281

Query:   270 GSNERKVIGRVNCRGGP-APGWVHSFPVTEHYVVVPEMSLRYCAQNLLRAEPTPLYKFEW 328
             GSN+R+V+GRV CR G   PGWVHSF VTE+YVV+PEM LRY  +NLLRAEPTPLYKFEW
Sbjct:   282 GSNKREVVGRVRCRSGSWGPGWVHSFAVTENYVVIPEMPLRYSVKNLLRAEPTPLYKFEW 341

Query:   329 HPDSKAFLHVMCKASGKIVASVEVPLYITFHFINAYEE-KDEDGRLIAIIADCCEHNADT 387
              P   AF+HVM K +G++VASVEVP Y+TFHFINAYEE K+ DG+   IIADCCEHNADT
Sbjct:   342 CPQDGAFIHVMSKLTGEVVASVEVPAYVTFHFINAYEEDKNGDGKATVIIADCCEHNADT 401

Query:   388 TILDKLRLNNLRSFNGQDVLPDARVGRFRIPFDGSEFGELEAALDPDEHGRGMDMCSINP 447
              ILD LRL+ LRS +G DVLPDAR+GRFRIP DGS++G+LE A++ ++HGR MDMCSINP
Sbjct:   402 RILDMLRLDTLRSSHGHDVLPDARIGRFRIPLDGSKYGKLETAVEAEKHGRAMDMCSINP 461

Query:   448 AYLGKMYRYAYACGAKRPCNFPNTLTKLDLVGKKAKNWYEEGAVPSEPFFVARPGATEED 507
              YLG+ YRY YACGA+RPCNFPN L+K+D+V KK KNW+E G +PSEPFFV RPGAT ED
Sbjct:   462 LYLGQKYRYVYACGAQRPCNFPNALSKVDIVEKKVKNWHEHGMIPSEPFFVPRPGATHED 521

Query:   508 DGVVISIVSERNGEGFALLLDGSTFEEIARAKFPYGLPYGLHGCWVPKN 556
             DGVVISIVSE NG  FA+LLDGS+FEEIARAKFPYGLPYGLHGCW+PK+
Sbjct:   522 DGVVISIVSEENGGSFAILLDGSSFEEIARAKFPYGLPYGLHGCWIPKD 570

GO:0009507 "chloroplast" evidence=ISM;RCA;NAS

GO:0009733 "response to auxin stimulus" evidence=IMP

GO:0010223 "secondary shoot formation" evidence=IGI;IMP

GO:0016702 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen" evidence=ISS

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009850 "auxin metabolic process" evidence=IMP

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0016121 "carotene catabolic process" evidence=IDA

GO:0016124 "xanthophyll catabolic process" evidence=IDA

GO:0009926 "auxin polar transport" evidence=IMP

GO:0009830 "cell wall modification involved in abscission" evidence=RCA

ZFIN\|ZDB-GENE-060421-7448 bco2b "beta-carotene oxygenase 2b" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-010509-1 bco2l "beta-carotene 15, 15-dioxygenase 2, like" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C8E0 BCO2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

FB\|FBgn0002937 ninaB "neither inactivation nor afterpotential B" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

MGI\|MGI:2177469 Bco2 "beta-carotene oxygenase 2" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8HXG8 BCO2 "Beta,beta-carotene 9',10'-oxygenase" [Macaca fascicularis (taxid:9541)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SM94 BCO2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9I993 BCMO1 "Beta,beta-carotene 15,15'-monooxygenase" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RS36 BCO2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VY26	CCD8_ARATH	1, ., 1, 4, ., 9, 9, ., n, 5	0.6949	0.9244	0.9017	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.14.99	0.976
4th Layer	1.14.99.n5	0.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		556
pfam03055		469	pfam03055, RPE65, Retinal pigment epithelial membr	1e-120
COG3670		490	COG3670, COG3670, Lignostilbene-alpha,beta-dioxyge	2e-51
PLN02258		590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	2e-26
PLN02969		610	PLN02969, PLN02969, 9-cis-epoxycarotenoid dioxygen	2e-11
PLN02491		545	PLN02491, PLN02491, carotenoid 9,10(9',10')-cleava	7e-11
PLN02969		610	PLN02969, PLN02969, 9-cis-epoxycarotenoid dioxygen	3e-06

>gnl\|CDD\|217340 pfam03055, RPE65, Retinal pigment epithelial membrane protein	Back alignment and domain information

 Score =  361 bits (928), Expect = e-120
 Identities = 160/495 (32%), Positives = 227/495 (45%), Gaps = 42/495 (8%)

Query: 75  AWTSVRQERWEGE-LVVQGEIPLWLKGTYLRNGPGMWHIGDYNFRHLFDGYATLVKLHIE 133
            +  VR+E  + E L V+GEIP  L GT  RNGPG    G + + H FDG   L     E
Sbjct: 1   NFAPVREELPDAEDLEVEGEIPADLNGTLYRNGPGPLERGGFRYHHWFDGDGMLHAFRFE 60

Query: 134 NGRLIAGHRQIESEAYKAAKE-NKKLCYREFSEVPKPDNFLSYVGELASLFSGASLTDNA 192
           +GR+   +R + +E YKA +   ++L   EF  + KPD   +             L + A
Sbjct: 61  DGRVTYRNRFVRTEGYKAERAAGRRLYPGEFGTL-KPDPCKN-----IFPRVPGKLKNVA 114

Query: 193 NTGVVKLGDGRVVCLTETQKGSII-IDPDTLDTISRFEYSDTLG-GLIHSAHPIVTESE- 249
           NT VV  G GR++ L E   G    +DP+TL+T+ R+++   L  G   +AHP V     
Sbjct: 115 NTNVVYHG-GRLLALWEA--GLPYRLDPETLETLGRYDFGGKLKPGPPFTAHPKVDPVTG 171

Query: 250 ---FLTLLPDLVSPGYWVVRMEAGSNERKVIGRVNCRGGPAPGWVHSFPVTEHYVVVPEM 306
                 L      P      ++A     K++  V     P P  +H F +TE+YV+ P++
Sbjct: 172 ELVNFGLSLGPKPPYLTYYEVDADG---KLVREVPIFSLPGPSMIHDFAITENYVIFPDL 228

Query: 307 SLRYCAQNLLRAEPTPLYKFEWHPDSKAFLHVMCKASGK-IVASVEVPLYITFHFINAYE 365
            L +    LL           W P+      V+ +  GK  V   E P    FH  NA+E
Sbjct: 229 PLVFDPLRLLLGGRAD--PLRWDPEKPTRFGVIPRRGGKSDVRWFEAPPCFVFHTANAWE 286

Query: 366 EKDEDGRLIAIIADCCEHNADTTILDKLRLNNLRSFNGQDVLPDARVGRFRIPFDGSEFG 425
           E  E      I+ D C ++ D   LD   L+NLR     D  P +R+ R+R+        
Sbjct: 287 EGGE------IVLDACRYD-DPDFLDPFYLDNLRPDAFADKKPRSRLTRWRLDLKTGGDV 339

Query: 426 ELEAALDPDEHGRGMDMCSINPAYLGKMYRYAYACGA---KRPCNFPNTLTKLDLVGKKA 482
             E  LD     R  +   INP Y+G+ YRY Y   A          + L K+DL   + 
Sbjct: 340 TEEVLLD-----RPCEFPRINPRYVGRKYRYVYMAAADPRPPGSGPFDGLVKVDLETGEV 394

Query: 483 KNW-YEEGAVPSEPFFVARPGATEEDDGVVISIV-SERNGEGFALLLDGSTFEE--IARA 538
           + W +  G  P EP FV RPGA +EDDG ++S+V  E  G    L+LD     E  +AR 
Sbjct: 395 QVWSFGPGCYPGEPIFVPRPGAADEDDGWLLSVVYDEDTGRSELLILDAKDLTEGPVARV 454

Query: 539 KFPYGLPYGLHGCWV 553
           + P+ +PYG HG WV
Sbjct: 455 ELPHRVPYGFHGTWV 469

This family represents a retinal pigment epithelial membrane receptor which is abundantly expressed in retinal pigment epithelium, and binds plasma retinal binding protein. The family also includes the sequence related neoxanthin cleavage enzyme in plants and lignostilbene-alpha,beta-dioxygenase in bacteria. Length = 469

>gnl\|CDD\|226196 COG3670, COG3670, Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>gnl\|CDD\|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED	Back alignment and domain information

>gnl\|CDD\|215523 PLN02969, PLN02969, 9-cis-epoxycarotenoid dioxygenase	Back alignment and domain information

>gnl\|CDD\|215271 PLN02491, PLN02491, carotenoid 9,10(9',10')-cleavage dioxygenase	Back alignment and domain information

>gnl\|CDD\|215523 PLN02969, PLN02969, 9-cis-epoxycarotenoid dioxygenase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		556
COG3670		490	Lignostilbene-alpha,beta-dioxygenase and related e	100.0
PF03055		486	RPE65: Retinal pigment epithelial membrane protein	100.0
PLN02258		590	9-cis-epoxycarotenoid dioxygenase NCED	100.0
PLN02491		545	carotenoid 9,10(9',10')-cleavage dioxygenase	100.0
PLN02969		610	9-cis-epoxycarotenoid dioxygenase	100.0
KOG1285		582	consensus Beta, beta-carotene 15,15'-dioxygenase a	100.0
KOG1285		582	consensus Beta, beta-carotene 15,15'-dioxygenase a	99.77

>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

Probab=100.00  E-value=5.3e-111  Score=871.64  Aligned_cols=458  Identities=29%  Similarity=0.456  Sum_probs=388.2

Q ss_pred             ccccccCCccccccccccccE-EEeecCCCCceEEEEeCCCCCCCCCCccccCccCCCcEEEEEEeCC-eEEEEEEEecC
Q 047920           69 VERNHVAWTSVRQERWEGELV-VQGEIPLWLKGTYLRNGPGMWHIGDYNFRHLFDGYATLVKLHIENG-RLIAGHRQIES  146 (556)
Q Consensus        69 ~~~~~~~~~~~~~E~~~~~l~-V~G~IP~~L~Gtl~RnGPg~~~~g~~~~~H~FDGdGml~~~~f~~G-~v~y~~RfV~T  146 (556)
                      ...|.++|+|+++|.+...|+ |+|+||++|+|||||||||++++++...+||||||||||+|.|.|| +|+|+||||||
T Consensus        19 ~~~w~g~~a~~~~E~~~t~L~~V~G~iPa~L~Gtl~RNGP~~l~~~g~~~~HwFDGDGMI~~v~f~~gg~a~yrnrfVrT   98 (490)
T COG3670          19 NPYWTGGFAPVRTEFDATDLTDVEGRIPADLDGTLYRNGPNPLHRGGIATYHWFDGDGMIHAVAFRDGGRATYRNRFVRT   98 (490)
T ss_pred             chhhhccCCccceeecccccceeeecCCcccCceEEccCCCccccCCccccCCccCCCeEEEEEecCCCceEEEEEEEee
Confidence            467999999999999998998 9999999999999999999999999999999999999999999995 99999999999


Q ss_pred             hHHHHHHHcCCccccccCCCCCCCchhhhhhhhhhcccCCCCCCccceeeEEcCCceeeEeecCCCcceeeCCCCCceee
Q 047920          147 EAYKAAKENKKLCYREFSEVPKPDNFLSYVGELASLFSGASLTDNANTGVVKLGDGRVVCLTETQKGSIIIDPDTLDTIS  226 (556)
Q Consensus       147 ~~~~~e~~agr~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~aNT~V~~~g~grLlAl~E~g~~p~~iDp~TLeT~g  226 (556)
                      ++|.+|++||+++|+++++.+.+..+...+        ....||.|||||+.|+ ++|+||||+| .||+|||.||+|+|
T Consensus        99 ~g~~ae~~Ag~~l~~g~~~~~p~~~~~~~~--------~~~lkn~aNTsVi~~~-~~LlalwEgG-~pyrLdp~tL~TlG  168 (490)
T COG3670          99 QGYLAENEAGKPLWGGLGETQPPGVRPHSR--------TGDLKNAANTSVIMHG-DELLALWEGG-SPYRLDPDTLETLG  168 (490)
T ss_pred             ceeehhhhcCcceeccccccCCCCcCcCcc--------ccccccCCccceEeeh-hHHHHHHhcC-CccccChhHhhhcC
Confidence            999999999999999988754332211110        1357999999999998 8999999998 69999999999999


Q ss_pred             ccccCCCCCCcccCCCCccccC--CceecccCCCCCcEEEEEEeCCCceeEEEEEEecCCCCCCccccccccCCCEEEEE
Q 047920          227 RFEYSDTLGGLIHSAHPIVTES--EFLTLLPDLVSPGYWVVRMEAGSNERKVIGRVNCRGGPAPGWVHSFPVTEHYVVVP  304 (556)
Q Consensus       227 ~~d~~~~l~~~~~sAHP~~Dp~--e~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~v~~~~~~~~~~iHdfavTenY~V~~  304 (556)
                      +.+|++.-.+..||||||+||.  |++||++.+..+..+++.+++.+..++. ..+   .+|.++|||||++|+||+||+
T Consensus       169 ~~~~~g~~~g~~fsAHPkvDp~tgel~~fg~s~~~~~l~~~~v~~~G~l~r~-~~i---~lpg~~~~HDFa~T~~y~If~  244 (490)
T COG3670         169 KEDFGGDPLGGPFSAHPKVDPDTGELFNFGYSFALPYLTYYVVDADGELRRT-VDI---PLPGPPMMHDFAITENYLIFF  244 (490)
T ss_pred             hhhcCCCCCCCccccCccCCCCCceEEEEEeccCCCeeEEEEECCCCcEEEe-eee---ecCCCccceeeeecCceEEEE
Confidence            9999985445789999999999  7999999887775577777755432221 123   358999999999999999999


Q ss_pred             ecccccCHHHHHhcCCCCccceeeCCCCCcEEEEEeCCCCceeEEEEcCceeEEeeccccccCCCCCceeEEEEEeeccC
Q 047920          305 EMSLRYCAQNLLRAEPTPLYKFEWHPDSKAFLHVMCKASGKIVASVEVPLYITFHFINAYEEKDEDGRLIAIIADCCEHN  384 (556)
Q Consensus       305 ~~Pl~~~~~~~l~g~~~~~~~~~w~~~~~t~i~Vi~R~~g~~v~~~e~~~~f~fH~vNAyEd~d~~g~~~~Iv~D~~~~~  384 (556)
                      +.|+.+|+...+.+.....+++.|+|+.+|||+||||.+++.|||||+++||+||+.||||+.|  |   .|.+|+|+|+
T Consensus       245 ~~Pv~~d~~p~ll~~~~~~~~~~~~pe~ptri~V~pR~g~~~irwfE~~p~fvfH~~NAye~~d--~---~v~~d~~~~~  319 (490)
T COG3670         245 DLPVTFDPVPRLLGRPADGHAMRWRPELPTRILVLPREGDSEIRWFEAEPGFVFHFLNAYEEGD--E---VVLVDFLRYD  319 (490)
T ss_pred             eCcccccchhHHhcCcccccceeecCCCCcEEEEEccCCCCceeEEecCCeEEEEecceeecCC--C---cEEEEEEeec
Confidence            9999999655555666667899999999999999999843689999999999999999999987  3   6999999998


Q ss_pred             CchhhhhhhhhcccccCCCCC--CCCCccEEEEEEeCCCCCccceeeecCCCccCCCCCCCccCCCCCCCCccEEEEecc
Q 047920          385 ADTTILDKLRLNNLRSFNGQD--VLPDARVGRFRIPFDGSEFGELEAALDPDEHGRGMDMCSINPAYLGKMYRYAYACGA  462 (556)
Q Consensus       385 ~~~~~~~~~~l~~l~~~~~~~--~~~~~~L~R~~idl~~~~~~~~~~~l~~~~~~~~~EfP~In~~~~G~~yry~Y~~~~  462 (556)
                       +....    ++.++...+.+  ....++|+||+|+|+++.+.  ++.++    ++++|||+||+++.|++|||+|+++.
T Consensus       320 -~~~~~----~~~~~~~~~g~~~~~a~~~L~R~~lnl~tg~v~--~~~~~----~r~~EFP~in~~~~G~p~RY~Y~~~~  388 (490)
T COG3670         320 -DFSQT----LDTLGEGPGGDFRTLAPPRLHRWTLNLKTGKVA--EEQLD----DRACEFPRINPRYVGQPYRYTYMSGA  388 (490)
T ss_pred             -ccccc----cccccccccccccccCCCcceEEEEccccchhH--HHhhh----hhhcccCccChhhcCCceEEEEEecc
Confidence             43221    12222222222  22368999999999987643  23444    57899999999999999999999976


Q ss_pred             cCCCCCCCc---eEEEecCCCceEEEc-CCCCcCCccEEeeCCCCCCCCCeEEEEEEEcC-CCceEEEEEecCCccc--c
Q 047920          463 KRPCNFPNT---LTKLDLVGKKAKNWY-EEGAVPSEPFFVARPGATEEDDGVVISIVSER-NGEGFALLLDGSTFEE--I  535 (556)
Q Consensus       463 ~~~~~~~~~---lvK~Dl~tg~~~~w~-~~~~~~~EPvFVPrpg~~~EDDG~Lls~V~d~-~~~s~L~VLDA~~l~e--V  535 (556)
                      ++....+++   |+|+|++||+.+.|+ ++++|++||+||||||+.+|||||||++|+|. .++|+|+||||++++.  |
T Consensus       389 rp~~~l~~g~~~l~k~D~~tg~~~~~~~g~~~y~~E~vfvPrpg~~~EdDGwLl~~vyd~~~~~Sel~v~DA~~~~~epI  468 (490)
T COG3670         389 RPGTFLFQGLQTLAKHDLETGTSQVYSFGPRGYGSEPVFVPRPGSSAEDDGWLLTLVYDGDRHASELLVFDAQRVTAEPI  468 (490)
T ss_pred             cCCccchhhcceeEEEeccCCcEEEEecCCCCcccccccccCCCCCcCCCcEEEEEEEecCCCcceEEEEecccCCCCcc
Confidence            655445555   999999999999995 89999999999999999999999999999996 4899999999999875  9


Q ss_pred             EEEEcCCCCCCCCCcccccCC
Q 047920          536 ARAKFPYGLPYGLHGCWVPKN  556 (556)
Q Consensus       536 Ar~~LP~~vP~GfHG~w~~~~  556 (556)
                      ||++||++||+||||.|++.+
T Consensus       469 a~l~Lp~~vP~gfHG~w~~~~  489 (490)
T COG3670         469 ARLALPQRVPYGFHGNWVPTE  489 (490)
T ss_pred             eEEeccccccccccccccccc
Confidence            999999999999999999863

>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection	Back alignment and domain information

>PLN02258 9-cis-epoxycarotenoid dioxygenase NCED	Back alignment and domain information

>PLN02491 carotenoid 9,10(9',10')-cleavage dioxygenase	Back alignment and domain information

>PLN02969 9-cis-epoxycarotenoid dioxygenase	Back alignment and domain information

>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		556
3fsn_A		533	Crystal Structure Of Rpe65 At 2.14 Angstrom Resolut		1e-41
2biw_A		490	Crystal Structure Of Apocarotenoid Cleavage Oxygena		2e-24
3npe_A		529	Structure Of Vp14 In Complex With Oxygen Length = 5		8e-21

>pdb|3FSN|A Chain A, Crystal Structure Of Rpe65 At 2.14 Angstrom Resolution Length = 533

Back alignment and structure

Iteration: 1

Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 148/512 (28%), Positives = 228/512 (44%), Gaps = 60/512 (11%) Query: 90 VQGEIPLWLKGTYLRNGPGMWHIGDYNFRHLFDGYATLVKLHIENGRLIAGHRQIESEAY 149 V G IPLWL G+ LR GPG++ +G F HLFDG A L K + G + R I ++AY Sbjct: 30 VTGRIPLWLTGSLLRCGPGLFEVGSEPFYHLFDGQALLHKFDFKEGHVTYHRRFIRTDAY 89 Query: 150 KAAKENKKLCYREFSEVPKPDNFLSYVGELASLFSGASLTDNANTGVVKLGDGRVVCLTE 209 A K++ EF PD + S F G +TDNA + +G+ C TE Sbjct: 90 VRAMTEKRIVITEFGTCAFPDPCKNIFSRFFSYFRGVEVTDNALVNIYPVGEDYYAC-TE 148 Query: 210 TQKGSIIIDPDTLDTISRFEYSDTLGGLIHSAHPIV----TESEFLTLLPDLVSPGYWVV 265 T + ++P+TL+TI + + + + +AHP + T S Y +V Sbjct: 149 TNFIT-KVNPETLETIKQVDLCNYVSVNGATAHPHIENDGTVYNIGNCFGKNFSIAYNIV 207 Query: 266 RM-------EAGSNERKVIGRVNCRGGPAPGWVHSFPVTEHYVVVPEMSLRYCAQNLLRA 318 ++ E ++ +++ + C P +VHSF +T +Y+V E ++ L + Sbjct: 208 KIPPLQADKEDPISKSEIVVQFPCSDRFKPSYVHSFGLTPNYIVFVETPVKINLFKFLSS 267 Query: 319 ----EPTPLYKFEWHPDSKAFLHVMCKASGKIVAS-VEVPLYITFHFINAYEEKDEDGRL 373 + FE + +LH+ K K + + + FH IN YE+ + Sbjct: 268 WSLWGANYMDCFESNETMGVWLHIADKKRKKYINNKYRTSPFNLFHHINTYEDHE----- 322 Query: 374 IAIIADCCEHNADTTILDKLRLNNLRSFNGQDVLPDAR------VGRFRIPF--DGSEFG 425 +I D C + + L L NLR N ++V +AR V R+ +P D ++ G Sbjct: 323 -FLIVDLCCWKGFEFVYNYLYLANLRE-NWEEVKKNARKAPQPEVRRYVLPLNIDKADTG 380 Query: 426 E---------LEAALDPDEH------------GRGMDMCSIN-PAYLGKMYRYAYACGAK 463 + A L DE + + IN Y GK Y YAY G Sbjct: 381 KNLVTLPNTTATAILCSDETIWLEPEVLFSGPRQAFEFPQINYQKYGGKPYTYAYGLGLN 440 Query: 464 RPCNFPNTLTKLDLVGKKAKNWYEEGAVPSEPFFVARPGATEEDDGVVIS-IVSERNGE- 521 P+ L KL++ K+ W E + PSEP FV+ P A EEDDGVV+S +VS G+ Sbjct: 441 H--FVPDRLCKLNVKTKETWVWQEPDSYPSEPIFVSHPDALEEDDGVVLSVVVSPGAGQK 498 Query: 522 -GFALLLDGSTFEEIARAKFPYGLPYGLHGCW 552 + L+L+ E+ARA+ +P HG + Sbjct: 499 PAYLLILNAKDLSEVARAEVEINIPVTFHGLF 530

PyMOL of 3fsn

>pdb|2BIW|A Chain A, Crystal Structure Of Apocarotenoid Cleavage Oxygenase From Synechocystis, Native Enzyme Length = 490

Back alignment and structure

>pdb|3NPE|A Chain A, Structure Of Vp14 In Complex With Oxygen Length = 529

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		556
3kvc_A		533	Retinoid isomerohydrolase; 7-bladed beta-propeller	1e-125
2biw_A		490	Apocarotenoid-cleaving oxygenase; non-heme iron, c	1e-119
3npe_A		529	9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti;	1e-90
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A Length = 533	Back alignment and structure

 Score =  376 bits (966), Expect = e-125
 Identities = 140/528 (26%), Positives = 217/528 (41%), Gaps = 58/528 (10%)

Query: 75  AWTSVRQERWEGELVVQGEIPLWLKGTYLRNGPGMWHIGDYNFRHLFDGYATLVKLHIEN 134
            + +V +        V G IPLWL G+ LR GPG++ +G   F HLFDG A L K   + 
Sbjct: 15  LFETVEELSSPLTAHVTGRIPLWLTGSLLRCGPGLFEVGSEPFYHLFDGQALLHKFDFKE 74

Query: 135 GRLIAGHRQIESEAYKAAKENKKLCYREFSEVPKPDNFLSYVGELASLFSGASLTDNANT 194
           G +    R I ++AY  A   K++   EF     PD   +      S F G  +TDNA  
Sbjct: 75  GHVTYHRRFIRTDAYVRAMTEKRIVITEFGTCAFPDPCKNIFSRFFSYFRGVEVTDNALV 134

Query: 195 GVVKLGDGRVVCLTETQKGSIIIDPDTLDTISRFEYSDTLGGLIHSAHPIV----TESEF 250
            +  +G       TET      ++P+TL+TI + +  + +     +AHP +    T    
Sbjct: 135 NIYPVG-EDYYACTETNFI-TKVNPETLETIKQVDLCNYVSVNGATAHPHIENDGTVYNI 192

Query: 251 LTLLPDLVSPGYWVVRM-------EAGSNERKVIGRVNCRGGPAPGWVHSFPVTEHYVVV 303
                   S  Y +V++       E   ++ +++ +  C     P +VHSF +T +Y+V 
Sbjct: 193 GNCFGKNFSIAYNIVKIPPLQADKEDPISKSEIVVQFPCSDRFKPSYVHSFGLTPNYIVF 252

Query: 304 PEMSLRYCAQNLLRAEP----TPLYKFEWHPDSKAFLHVMCKASGKIVAS-VEVPLYITF 358
            E  ++      L +        +  FE +     +LH+  K   K + +      +  F
Sbjct: 253 VETPVKINLFKFLSSWSLWGANYMDCFESNETMGVWLHIADKKRKKYINNKYRTSPFNLF 312

Query: 359 HFINAYEEKDEDGRLIAIIADCCEHNADTTILDKLRLNNLRSFNGQ-----DVLPDARVG 413
           H IN YE+ +       +I D C       + + L L NLR    +        P   V 
Sbjct: 313 HHINTYEDHEF------LIVDLCCWKGFEFVYNYLYLANLRENWEEVKKNARKAPQPEVR 366

Query: 414 RFRIPFDG-----------------------SEFGELEAALDPDEHGRGMDMCSINP-AY 449
           R+ +P +                         E   LE  +      +  +   IN   Y
Sbjct: 367 RYVLPLNIDKADTGKNLVTLPNTTATAILCSDETIWLEPEVLFSGPRQAFEFPQINYQKY 426

Query: 450 LGKMYRYAYACGAKRPCNFPNTLTKLDLVGKKAKNWYEEGAVPSEPFFVARPGATEEDDG 509
            GK Y YAY  G       P+ L KL++  K+   W E  + PSEP FV+ P A EEDDG
Sbjct: 427 GGKPYTYAYGLGLNHF--VPDRLCKLNVKTKETWVWQEPDSYPSEPIFVSHPDALEEDDG 484

Query: 510 VVISIVSERNG---EGFALLLDGSTFEEIARAKFPYGLPYGLHGCWVP 554
           VV+S+V          + L+L+     E+ARA+    +P   HG +  
Sbjct: 485 VVLSVVVSPGAGQKPAYLLILNAKDLSEVARAEVEINIPVTFHGLFKK 532

PyMOL of 3kvc

>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A* Length = 490	Back alignment and structure

>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays} Length = 529	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		556
3kvc_A		533	Retinoid isomerohydrolase; 7-bladed beta-propeller	100.0
2biw_A		490	Apocarotenoid-cleaving oxygenase; non-heme iron, c	100.0
3npe_A		529	9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti;	100.0

>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A 4f2z_A 4f30_A 4f3a_A 4f3d_A	Back alignment and structure

Probab=100.00  E-value=1.1e-114  Score=955.60  Aligned_cols=472  Identities=29%  Similarity=0.469  Sum_probs=389.1

Q ss_pred             cccCCccccccccccccEEEeecCCCCceEEEEeCCCCCCCCCCccccCccCCCcEEEEEEeCCeEEEEEEEecChHHHH
Q 047920           72 NHVAWTSVRQERWEGELVVQGEIPLWLKGTYLRNGPGMWHIGDYNFRHLFDGYATLVKLHIENGRLIAGHRQIESEAYKA  151 (556)
Q Consensus        72 ~~~~~~~~~~E~~~~~l~V~G~IP~~L~Gtl~RnGPg~~~~g~~~~~H~FDGdGml~~~~f~~G~v~y~~RfV~T~~~~~  151 (556)
                      ....|+++.|+..+.+|+|+|+||+||+|||||||||++++|+..++||||||||||+|+|++|+|+|+||||||++|++
T Consensus        12 ~~~~f~~~~E~~~p~~l~V~G~IP~~L~Gtl~RNGPg~~~~g~~~~~HwFDGdGmlh~~~~~~G~v~y~~R~v~T~~~~~   91 (533)
T 3kvc_A           12 YKKLFETVEELSSPLTAHVTGRIPLWLTGSLLRCGPGLFEVGSEPFYHLFDGQALLHKFDFKEGHVTYHRRFIRTDAYVR   91 (533)
T ss_dssp             GGGGGSCCCCCSSCEECEEEECCCTTCCEEEEEEEECCCEETTEECCBTTTSCEEEEEEEEETTEEEEEEEECCCHHHHH
T ss_pred             hhhhcCcccccCCceeeeEEeeCCCCCceEEEEeCCCccccCCcccccccCCCCEEEEEEEeCCEEEEEEEEecCHHHHH
Confidence            45678999888888899999999999999999999999999988899999999999999999999999999999999999


Q ss_pred             HHHcCCccccccCCCCCCCchhhhhhhhhhcccCCCCCCccceeeEEcCCceeeEeecCCCcceeeCCCCCceeeccccC
Q 047920          152 AKENKKLCYREFSEVPKPDNFLSYVGELASLFSGASLTDNANTGVVKLGDGRVVCLTETQKGSIIIDPDTLDTISRFEYS  231 (556)
Q Consensus       152 e~~agr~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~aNT~V~~~g~grLlAl~E~g~~p~~iDp~TLeT~g~~d~~  231 (556)
                      |+++||++|++|++...++++.+.|..+.+.+.....+|+|||||++|+ ||||||||++ .||+|||+||||+|.+||+
T Consensus        92 e~~agr~~~~~fg~~~~~~p~~~~~~~~~~~~~~~~~~~~ANt~v~~~~-g~LlAl~E~~-~p~~iDp~tLeT~G~~d~~  169 (533)
T 3kvc_A           92 AMTEKRIVITEFGTCAFPDPCKNIFSRFFSYFRGVEVTDNALVNIYPVG-EDYYACTETN-FITKVNPETLETIKQVDLC  169 (533)
T ss_dssp             HHHHTSCCSCBTTBCC-------------------CCCCCCCSEEEEET-TEEEEECSSS-EEEEECTTTCCEEEEEEHH
T ss_pred             HHHcCCcceeccCcccCCcchhhHHHHHHHhhccCCCCCCCEEEEEEEC-CEEEEEEcCC-cCEEeChHHcccccccccC
Confidence            9999999999999976666655555544555544357899999999997 8999999998 6999999999999999999


Q ss_pred             CCCCCcccCCCCccccC-CceecccCCCC---CcEEEEEEeCCC-------ceeEEEEEEecCCCCCCccccccccCCCE
Q 047920          232 DTLGGLIHSAHPIVTES-EFLTLLPDLVS---PGYWVVRMEAGS-------NERKVIGRVNCRGGPAPGWVHSFPVTEHY  300 (556)
Q Consensus       232 ~~l~~~~~sAHP~~Dp~-e~~~~~~~~~~---~~y~v~~~~~~~-------~~~~~~~~v~~~~~~~~~~iHdfavTenY  300 (556)
                      +.|++..||||||+||. |+++|++...+   +.|.++++++.+       .+..++.++++++++.|+|||||+|||||
T Consensus       170 g~l~~~~~tAHPk~DptGel~~fg~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~p~~iHDFaiTeny  249 (533)
T 3kvc_A          170 NYVSVNGATAHPHIENDGTVYNIGNCFGKNFSIAYNIVKIPPLQADKEDPISKSEIVVQFPCSDRFKPSYVHSFGLTPNY  249 (533)
T ss_dssp             HHSSCSCCCSCCEECTTSCEEEEEEECC---CCEEEEEEECCCCTTCCCGGGGCEEEEEEECSSTTCCBCCCCCEECSSE
T ss_pred             CccCCCccCCCCccCCCCCEEEEeeccCCCCCcEEEEEEECccccccccccccceeEEeeccccCCCCceeeeeeecCCE
Confidence            99987789999999999 99999987753   569999987431       23456788998778899999999999999


Q ss_pred             EEEEecccccCHHHHHhc----CCCCccceeeCCCCCcEEEEEeCCCCce-eEEEEcCceeEEeeccccccCCCCCceeE
Q 047920          301 VVVPEMSLRYCAQNLLRA----EPTPLYKFEWHPDSKAFLHVMCKASGKI-VASVEVPLYITFHFINAYEEKDEDGRLIA  375 (556)
Q Consensus       301 ~V~~~~Pl~~~~~~~l~g----~~~~~~~~~w~~~~~t~i~Vi~R~~g~~-v~~~e~~~~f~fH~vNAyEd~d~~g~~~~  375 (556)
                      +||+++|+.+|+.++++|    +.+.+++|+|+|++++||+||||++++. ++||++++||+||++||||+++      +
T Consensus       250 ~Vf~~~P~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~tr~~VipR~~~~~~~~~~~~~~~f~fH~~NA~Ee~~------~  323 (533)
T 3kvc_A          250 IVFVETPVKINLFKFLSSWSLWGANYMDCFESNETMGVWLHIADKKRKKYINNKYRTSPFNLFHHINTYEDHE------F  323 (533)
T ss_dssp             EEEEECSEEEC-----------CCCSGGGEEECSSCCEEEEEEETTTTEEEEEEEEECCEEEEEEEEEEEETT------E
T ss_pred             EEEEeCCeEEcHHHHhhcccccCCChHHheeecCCCCcEEEEEECCCCCcccEEEEeCCeeEEeeeeeEEeCC------E
Confidence            999999999999999887    5666789999999999999999998876 4899999999999999999754      7


Q ss_pred             EEEEeeccCCchhhhhhhhhcccccCCC-----CCCCCCccEEEEEEeCCCCC--c-----------cc----------e
Q 047920          376 IIADCCEHNADTTILDKLRLNNLRSFNG-----QDVLPDARVGRFRIPFDGSE--F-----------GE----------L  427 (556)
Q Consensus       376 Iv~D~~~~~~~~~~~~~~~l~~l~~~~~-----~~~~~~~~L~R~~idl~~~~--~-----------~~----------~  427 (556)
                      ||+|+|+|+..+.+++.+++++|+....     ....+.++|+||+|||+++.  +           ++          +
T Consensus       324 Iv~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~R~~l~l~~~~~~~~~nl~~~~~~~~~a~~~~~~~~~~  403 (533)
T 3kvc_A          324 LIVDLCCWKGFEFVYNYLYLANLRENWEEVKKNARKAPQPEVRRYVLPLNIDKADTGKNLVTLPNTTATAILCSDETIWL  403 (533)
T ss_dssp             EEEEEEEEESSSCGGGGCBHHHHTSCHHHHHHHHTTSCEEEEEEEEEESCCCGGGTTSBCCCCTTCCCEEEECTTSEEEE
T ss_pred             EEEEEeeeCCchhhhhhhhhhhhcccchhccccccccCCceEEEEEEeCCcccccccccccccccccceeeeccCCceee
Confidence            9999999983267777777777764100     01245689999999998641  1           10          0


Q ss_pred             -eeecCCCccCC-CCCCCccCC-CCCCCCccEEEEecccCCCCCCCceEEEecCCCceEEEcCCCCcCCccEEeeCCCCC
Q 047920          428 -EAALDPDEHGR-GMDMCSINP-AYLGKMYRYAYACGAKRPCNFPNTLTKLDLVGKKAKNWYEEGAVPSEPFFVARPGAT  504 (556)
Q Consensus       428 -~~~l~~~~~~~-~~EfP~In~-~~~G~~yry~Y~~~~~~~~~~~~~lvK~Dl~tg~~~~w~~~~~~~~EPvFVPrpg~~  504 (556)
                       ++.|+.  .+. ++|||+||+ +|.||+|||+|+++...  .++++|+|+|++||+.+.|+++++++|||+|||||+++
T Consensus       404 ~~~~l~~--~~~~~~EfP~In~~~~~Gr~~Ry~Y~~~~~~--~~~~~l~K~D~~tg~~~~w~~~~~~~~EPiFVPrp~~~  479 (533)
T 3kvc_A          404 EPEVLFS--GPRQAFEFPQINYQKYGGKPYTYAYGLGLNH--FVPDRLCKLNVKTKETWVWQEPDSYPSEPIFVSHPDAL  479 (533)
T ss_dssp             ECEEEEC--BTTEEEEEEECCHHHHTTSCCCEEEEEEEET--TEEEEEEEEETTTCCEEEECCTTCBCCCCEEEECTTCC
T ss_pred             eeeeecc--CCcccccCceECHHHhCCCcccEEEEeccCC--CCCceeEEEEcCCCCEEEEeCCCccccCceeecCCCCC
Confidence             112221  025 799999999 79999999999987653  46799999999999999999999999999999999999


Q ss_pred             CCCCeEEEEEEEcCC---CceEEEEEecCCccccEEEEcCCCCCCCCCcccccC
Q 047920          505 EEDDGVVISIVSERN---GEGFALLLDGSTFEEIARAKFPYGLPYGLHGCWVPK  555 (556)
Q Consensus       505 ~EDDG~Lls~V~d~~---~~s~L~VLDA~~l~eVAr~~LP~~vP~GfHG~w~~~  555 (556)
                      +|||||||++|+|..   ++|+|+||||++|++|||++||++||+||||+|+++
T Consensus       480 ~EDDG~lLs~V~d~~~~~~~s~LlILDA~~l~~vArv~lP~rvP~GfHG~w~~~  533 (533)
T 3kvc_A          480 EEDDGVVLSVVVSPGAGQKPAYLLILNAKDLSEVARAEVEINIPVTFHGLFKKS  533 (533)
T ss_dssp             STTCEEEEEEEECCSTTSCSEEEEEEETTTCCEEEEEEESSCCCCCCEEEEEEC
T ss_pred             CCCCcEEEEEEEeCCcCCCccEEEEEeCCCChhhEEEEeCCCCCCCccccccCC
Confidence            999999999999953   467999999999999999999999999999999974

PyMOL of 3kvc

>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A*	Back alignment and structure

>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00