Citrus Sinensis ID: 047970

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300----
MLRKKTAWVQAGVTIGELYHRISEKSKYLGFPAGVRSILDRKSMGEDLFWALHGGGAASFGIIVAWKVNLVPVPSNVTVNTVTRTLEQDATKIFQKWQSAADKLPEDLTCSAIFAVRNSNIVALFSSLFLGRADQQWATYSHWVESLPELGLKKEDCMELSWVESIVYFDRGFLAKDLLKLETLLDRNYSKSFWKMRADFVMKPILVKGLEGMYDFFHEQGGKNLQVVAFPYSGKLAKIPESAISFPHRAGNIYHWMEPNLVRKLSNYTTPYVSKNPRATYLNVRDLEIGRNNKGYTSVKEASI
cccccEEEEcccccHHHHHHHHHHHccccEEccccEEEEcccccccccccHHcccccccEEEEEEEEEEEEEcccEEEEEEEEcccHHHHHHHHHHHHHHHHccccccccEEEEEEEcccEEEEEEEEEcccHHHHHHHHHHcccccccccccccccccccHHHHHHHHcccccccccHHHHHHHccccccccEEEEcccccccccHHHHHHHHHHHHHccccEEEEEEEccccccccccccccccccccccccccccHHHHHHHHHccccccccccccEEccccccccccccccccccccccc
ccccccEEEEccccHHHHHHHHHHHcccccccccccccccHHHHcccHHEEEEccccccEEEEEEEEEEEEccccEEEEEEEcccccccHHHHHHHHHHHHHcccccEEEEEEEEEcccEEEEEEEEEEcccHHHHHHHHHHHHHHccHccccHccHHEHHHHHHEHEHcccccccccccHHHHHccccccHHHccccccccccccHHHHHHHHHHHHccccccEEEEEcccccccccccccccccccccccEEEccccHHHHHHHHHcccccccccccEEEEEccccccEcccccccEEEccc
MLRKKTAWVQAGVTIGELYHRISekskylgfpagvrsildrksMGEDLFWAlhgggaasFGIIVAWKVnlvpvpsnvtvNTVTRTLEQDATKIFQKWQSaadklpedltcsAIFAVRNSNIVALFSSLFLGRADQQWATYSHWVeslpelglkkedcmeLSWVESIVYFDRGFLAKDLLKLETLLDRNYSKSFWKMRADFVMKPILVKGLEGMYDFFheqggknlqvvafpysgklakipesaisfphragniyhwmepnlvrklsnyttpyvsknpratylnvrdleigrnnkgytsvkeasi
mlrkktawvqaGVTIGELyhrisekskylgfPAGVRSILDRKSMGEDLFWALHGGGAASFGIIVAWKVNLVPVPSNVTVNTVTRTLEQDATKIFQKWQSAADKLPEDLTCSAIFAVRNSNIVALFSSLFLGRADQQWATYSHWVESLPELGLKKEDCMELSWVESIVYFDRGFLAKDLLKLETLLDRNYSKSFWKMRADFVMKPILVKGLEGMYDFFHEQGGKNLQVVAFPYSGKLAKIPESAISFPHRAGNIYHWMEPNLVRKLSNYTTpyvsknpratylnvrdleigrnnkgytsvkeasi
MLRKKTAWVQAGVTIGELYHRISEKSKYLGFPAGVRSILDRKSMGEDLFWALHGGGAASFGIIVAWKvnlvpvpsnvtvntvtRTLEQDATKIFQKWQSAADKLPEDLTCSAIFAVRNSNIVALFSSLFLGRADQQWATYSHWVESLPELGLKKEDCMELSWVESIVYFDRGFlakdllkletlldRNYSKSFWKMRADFVMKPILVKGLEGMYDFFHEQGGKNLQVVAFPYSGKLAKIPESAISFPHRAGNIYHWMEPNLVRKLSNYTTPYVSKNPRATYLNVRDLEIGRNNKGYTSVKEASI
*****TAWVQAGVTIGELYHRISEKSKYLGFPAGVRSILDRKSMGEDLFWALHGGGAASFGIIVAWKVNLVPVPSNVTVNTVTRTLEQDATKIFQKWQSAADKLPEDLTCSAIFAVRNSNIVALFSSLFLGRADQQWATYSHWVESLPELGLKKEDCMELSWVESIVYFDRGFLAKDLLKLETLLDRNYSKSFWKMRADFVMKPILVKGLEGMYDFFHEQGGKNLQVVAFPYSGKLAKIPESAISFPHRAGNIYHWMEPNLVRKLSNYTTPYVSKNPRATYLNVRDLEIG**************
***KKTAWVQAGVTIGELYHRISEKSKYLGFPAGVRSILDR**M*EDLFWALHGGGAASFGIIVAWKVNLVPVPSNVTVNTVTRTLEQDATKIFQKWQSAADKLPEDLTCSAIFAVRNSNIVALFSSLFLGRADQQWATYSHWVESLPELGLKKEDCMELSWVESIVYFDRGFLAKDLLKLETLLDRNYSKSFWKMRADFVMKPILVKGLEGMYDFFHEQGGKNLQVVAFPYSGKLAKIPESAISFPHRAGNIYHWMEPNLVRKLSNYTTPYVSKNPRATYLNVRDLEIGRNNKGYTSVKEASI
********VQAGVTIGELYHRISEKSKYLGFPAGVRSILDRKSMGEDLFWALHGGGAASFGIIVAWKVNLVPVPSNVTVNTVTRTLEQDATKIFQKWQSAADKLPEDLTCSAIFAVRNSNIVALFSSLFLGRADQQWATYSHWVESLPELGLKKEDCMELSWVESIVYFDRGFLAKDLLKLETLLDRNYSKSFWKMRADFVMKPILVKGLEGMYDFFHEQGGKNLQVVAFPYSGKLAKIPESAISFPHRAGNIYHWMEPNLVRKLSNYTTPYVSKNPRATYLNVRDLEIGRNNKGY********
***KKTAWVQAGVTIGELYHRISEKSKYLGFPAGVRSILDRKSMGEDLFWALHGGGAASFGIIVAWKVNLVPVPSNVTVNTVTRTLEQDATKIFQKWQSAADKLPEDLTCSAIFAVRNSNIVALFSSLFLGRADQQWATYSHWVESLPELGLKKEDCMELSWVESIVYFDRGFLAKDLLKLETLLDRNYSKSFWKMRADFVMKPILVKGLEGMYDFFHEQGGKNLQVVAFPYSGKLAKIPESAISFPHRAGNIYHWMEPNLVRKLSNYTTPYVSKNPRATYLNVRDLEIGRNNKGYTSVK****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLRKKTAWVQAGVTIGELYHRISEKSKYLGFPAGVRSILDRKSMGEDLFWALHGGGAASFGIIVAWKVNLVPVPSNVTVNTVTRTLEQDATKIFQKWQSAADKLPEDLTCSAIFAVRNSNIVALFSSLFLGRADQQWATYSHWVESLPELGLKKEDCMELSWVESIVYFDRGFLAKDLLKLETLLDRNYSKSFWKMRADFVMKPILVKGLEGMYDFFHEQGGKNLQVVAFPYSGKLAKIPESAISFPHRAGNIYHWMEPNLVRKLSNYTTPYVSKNPRATYLNVRDLEIGRNNKGYTSVKEASI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query304 2.2.26 [Sep-21-2011]
Q8GTB6545 Tetrahydrocannabinolic ac N/A no 0.934 0.521 0.377 3e-54
Q33DQ2545 Inactive tetrahydrocannab N/A no 0.934 0.521 0.377 8e-54
A6P6W0545 Cannabidiolic acid syntha N/A no 0.934 0.521 0.372 4e-52
A6P6V9544 Cannabidiolic acid syntha N/A no 0.930 0.520 0.383 4e-52
A6P6W1545 Cannabidiolic acid syntha N/A no 0.934 0.521 0.369 2e-51
Q9SVG4570 Reticuline oxidase-like p no no 0.947 0.505 0.360 2e-44
P93479535 Reticuline oxidase OS=Pap N/A no 0.930 0.528 0.311 3e-35
P30986538 Reticuline oxidase OS=Esc N/A no 0.950 0.537 0.306 8e-35
>sp|Q8GTB6|THCAS_CANSA Tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=1 SV=1 Back     alignment and function desciption
 Score =  212 bits (539), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 136/360 (37%), Positives = 195/360 (54%), Gaps = 76/360 (21%)

Query: 2   LRKKTAWVQAGVTIGELYHRISEKSKYLGFPAG-------------------VRS----- 37
           +  +TAWV+AG T+GE+Y+ I+EK++ L FP G                   +R+     
Sbjct: 142 VHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAA 201

Query: 38  --------------ILDRKSMGEDLFWALHGGGAASFGIIVAWKVNLVPVPSNVTVNTVT 83
                         +LDRKSMGEDLFWA+ GGG  +FGII AWK+ LV VPS  T+ +V 
Sbjct: 202 DNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVK 261

Query: 84  RTLE-QDATKIFQKWQSAADKLPEDLTCSAIFAVRN---------SNIVALFSSLFLGRA 133
           + +E     K+F KWQ+ A K  +DL     F  +N         + +   FSS+F G  
Sbjct: 262 KNMEIHGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGV 321

Query: 134 DQQWATYSHWVESLPELGLKKEDCMELSWVESIVYFDRGFLAKDL--LKLETLLDRNYS- 190
           D      +   +S PELG+KK DC E SW+++ +++  G +  +    K E LLDR+   
Sbjct: 322 DSLVDLMN---KSFPELGIKKTDCKEFSWIDTTIFYS-GVVNFNTANFKKEILLDRSAGK 377

Query: 191 KSFWKMRADFVMKPI----LVKGLEGMYDFFHEQGGKNLQVVAFPYSGKLAKIPESAISF 246
           K+ + ++ D+V KPI    +VK LE +Y+   E  G  + V+ +PY G + +I ESAI F
Sbjct: 378 KTAFSIKLDYVKKPIPETAMVKILEKLYE---EDVGAGMYVL-YPYGGIMEEISESAIPF 433

Query: 247 PHRAGNIYH------WMEP-------NLVRKLSNYTTPYVSKNPRATYLNVRDLEIGRNN 293
           PHRAG +Y       W +        N VR + N+TTPYVS+NPR  YLN RDL++G+ N
Sbjct: 434 PHRAGIMYELWYTASWEKQEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTN 493
Catalyzes the oxidative cyclization of the monoterpene moiety in cannabigerolic acid (CBGA), producing delta(9)-tetrahydrocannabinolate (THCA), the major cannabioid in drug-type Cannabis plants. Can also use cannabinerolic acid as substrate, but not cannabigerol or cannabinerol.
Cannabis sativa (taxid: 3483)
EC: 1EC: .EC: 2EC: 1EC: .EC: 3EC: .EC: 7
>sp|Q33DQ2|THCAI_CANSA Inactive tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=3 SV=1 Back     alignment and function description
>sp|A6P6W0|CASL1_CANSA Cannabidiolic acid synthase-like 1 OS=Cannabis sativa GN=CBDAS2 PE=2 SV=1 Back     alignment and function description
>sp|A6P6V9|CBDAS_CANSA Cannabidiolic acid synthase OS=Cannabis sativa GN=CBDAS PE=1 SV=1 Back     alignment and function description
>sp|A6P6W1|CASL2_CANSA Cannabidiolic acid synthase-like 2 OS=Cannabis sativa GN=CBDAS3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SVG4|RETOL_ARATH Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2 Back     alignment and function description
>sp|P93479|RETO_PAPSO Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1 Back     alignment and function description
>sp|P30986|RETO_ESCCA Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query304
358346111 576 Reticuline oxidase [Medicago truncatula] 0.980 0.517 0.475 2e-73
358348153 543 Reticuline oxidase [Medicago truncatula] 0.976 0.546 0.442 6e-73
356512133 534 PREDICTED: reticuline oxidase-like prote 0.967 0.550 0.439 9e-73
356512137 536 PREDICTED: reticuline oxidase-like prote 0.986 0.559 0.441 1e-71
358348161 545 Reticuline oxidase-like protein [Medicag 0.976 0.544 0.434 9e-71
356510754 538 PREDICTED: reticuline oxidase-like prote 0.970 0.548 0.455 3e-70
224115242 527 predicted protein [Populus trichocarpa] 0.970 0.559 0.436 6e-70
359483744 538 PREDICTED: LOW QUALITY PROTEIN: reticuli 0.963 0.544 0.453 1e-69
358348159 541 Reticuline oxidase [Medicago truncatula] 0.976 0.548 0.428 2e-69
224110866 533 predicted protein [Populus trichocarpa] 0.967 0.551 0.432 4e-69
>gi|358346111|ref|XP_003637115.1| Reticuline oxidase [Medicago truncatula] gi|355503050|gb|AES84253.1| Reticuline oxidase [Medicago truncatula] Back     alignment and taxonomy information
 Score =  281 bits (720), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 162/341 (47%), Positives = 203/341 (59%), Gaps = 43/341 (12%)

Query: 2   LRKKTAWVQAGVTIGELYHRISEKSKYLGFPAGVR-----------SILDRKSMGEDLFW 50
           + K++AWVQ G T GEL ++IS+KSK LGFPA               +LDR+SMGEDLFW
Sbjct: 174 VEKRSAWVQGGATAGELLYKISQKSKTLGFPAADNILDAHIIDVNGRVLDRESMGEDLFW 233

Query: 51  ALHGGGAASFGIIVAWKVNLVPVPSNVTVNTVTRTLEQDATKIFQKWQSAADKLPEDLTC 110
           A+ GGG ASFG+I+AWKV LV VPS VT+  V+RTLE +ATK+ QKWQ  A+KL EDL  
Sbjct: 234 AIRGGGGASFGVIIAWKVKLVHVPSTVTIFRVSRTLEHNATKLIQKWQLVANKLDEDLNI 293

Query: 111 SAIF-------AVRNSNIVALFSSLFLGRADQQWATYSHWVESLPELGLKKEDCMELSWV 163
             I          R   I A F SLFLG  D          E  PELGL +EDC E+SW+
Sbjct: 294 RVILERVNTSTQTRKLTIKATFESLFLGGVDGLIPLME---EEFPELGLVREDCTEMSWI 350

Query: 164 ESIVYFDRGFLAKDLLK---LETLLDRNYSKS-FWKMRADFVMKPILVKGLEGMYDFFHE 219
           ES++Y   G    D      LE LL+R +S   F+K ++D+V  PI   GLEG++  F+E
Sbjct: 351 ESVIY--HGGFTSDFTSDQPLEVLLNRTHSGVLFFKAKSDYVRDPIPDIGLEGLWPMFYE 408

Query: 220 QGGKNLQVVAFPYSGKLAKIPESAISFPHRAGNIYH------WMEP---------NLVRK 264
              K+  ++  PY G + +I ES I FPHRAGNIY       W E          N +RK
Sbjct: 409 DEAKSAVLIFTPYGGIMDEISESEIPFPHRAGNIYQIQHLVFWKEEGDKVEKRHINWIRK 468

Query: 265 LSNYTTPYVSKNPRATYLNVRDLEIG-RNNKGYTSVKEASI 304
           L  Y  P+VSK+PR  Y+N RDL+IG  NN GYTS K+ASI
Sbjct: 469 LYIYMEPFVSKSPRGAYVNYRDLDIGVNNNNGYTSYKKASI 509

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|358348153|ref|XP_003638113.1| Reticuline oxidase [Medicago truncatula] gi|355504048|gb|AES85251.1| Reticuline oxidase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356512133|ref|XP_003524775.1| PREDICTED: reticuline oxidase-like protein-like [Glycine max] Back     alignment and taxonomy information
>gi|356512137|ref|XP_003524777.1| PREDICTED: reticuline oxidase-like protein-like [Glycine max] Back     alignment and taxonomy information
>gi|358348161|ref|XP_003638117.1| Reticuline oxidase-like protein [Medicago truncatula] gi|355504052|gb|AES85255.1| Reticuline oxidase-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356510754|ref|XP_003524099.1| PREDICTED: reticuline oxidase-like protein-like [Glycine max] Back     alignment and taxonomy information
>gi|224115242|ref|XP_002332196.1| predicted protein [Populus trichocarpa] gi|222875303|gb|EEF12434.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359483744|ref|XP_003633009.1| PREDICTED: LOW QUALITY PROTEIN: reticuline oxidase-like protein-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|358348159|ref|XP_003638116.1| Reticuline oxidase [Medicago truncatula] gi|355504051|gb|AES85254.1| Reticuline oxidase [Medicago truncatula] Back     alignment and taxonomy information
>gi|224110866|ref|XP_002333020.1| predicted protein [Populus trichocarpa] gi|222834634|gb|EEE73097.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query304
TAIR|locus:2158740537 AT5G44400 [Arabidopsis thalian 0.855 0.484 0.381 9.9e-56
TAIR|locus:2044692532 MEE23 "MATERNAL EFFECT EMBRYO 0.842 0.481 0.368 2.9e-54
TAIR|locus:2158730542 AT5G44390 [Arabidopsis thalian 0.868 0.487 0.381 7.8e-54
TAIR|locus:2204579534 AT1G30760 [Arabidopsis thalian 0.825 0.470 0.365 1.3e-53
TAIR|locus:2158720541 AT5G44380 [Arabidopsis thalian 0.868 0.487 0.362 2.9e-52
TAIR|locus:2197950535 AT1G26380 [Arabidopsis thalian 0.851 0.484 0.355 6.8e-51
TAIR|locus:2198000529 AT1G26420 [Arabidopsis thalian 0.851 0.489 0.365 2.9e-50
TAIR|locus:2197935530 AT1G26390 [Arabidopsis thalian 0.855 0.490 0.357 6.8e-49
TAIR|locus:2197900552 AT1G26410 [Arabidopsis thalian 0.851 0.469 0.358 6.8e-49
TAIR|locus:2158700532 AT5G44360 [Arabidopsis thalian 0.845 0.483 0.340 2.9e-48
TAIR|locus:2158740 AT5G44400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 466 (169.1 bits), Expect = 9.9e-56, Sum P(2) = 9.9e-56
 Identities = 110/288 (38%), Positives = 156/288 (54%)

Query:    38 ILDRKSMGEDLFWALHGGGAASFGIIVAWKXXXXXXXXXXXXXXXXRTLEQDA-TKIFQK 96
             +LDR +MGED FWA+ GG   SFGII+AWK                +TL+QD   KI  K
Sbjct:   221 LLDRAAMGEDTFWAIRGGAGGSFGIILAWKIKLVPVPKTVTVFTVTKTLQQDVGNKIISK 280

Query:    97 WQSAADKLPEDLTCSAIFAVR----NSNIVALFSSLFLGRADQQWATYSHWVESLPELGL 152
             WQ  ADKL E+L    +F V     N  +   +++LFLG    +    +   +S PELGL
Sbjct:   281 WQRVADKLVEELFIRVLFNVAGTGGNKTVTTSYNALFLGG---KGTLMNVMKKSFPELGL 337

Query:   153 KKEDCMELSWVESIVYFDRGFXXXXXXXXXXXXXRNYSKSFWKMRADFVMKPILVKGLEG 212
               +DC+E+SW+ESI Y   GF               + K  +K ++DFV  PI   GL+G
Sbjct:   338 TFKDCIEMSWLESIAYIS-GFPTHTPTNVLLQGKSPFPKVSFKAKSDFVKTPIPESGLQG 396

Query:   213 MYDFFHEQGGKNLQVVAF-PYSGKLAKIPESAISFPHRAGNIYH------WME----P-- 259
             ++    ++   ++ ++ + PY G +AKIPES I FPHR G ++       W++    P  
Sbjct:   397 IFKKLLKE---DIPLMIWNPYGGMMAKIPESQIPFPHRKGVLFKVQYVTSWLDSDKRPSR 453

Query:   260 --NLVRKLSNYTTPYVSKNPRATYLNVRDLEIGRNNKGY-TSVKEASI 304
               N +R L +Y TPYVS NPR  Y+N RDL++GRN K   T +K+A +
Sbjct:   454 HINWIRDLYSYMTPYVSSNPREAYVNYRDLDLGRNTKDVKTCIKQAQV 501
GO:0003824 "catalytic activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0009055 "electron carrier activity" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005618 "cell wall" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
TAIR|locus:2044692 MEE23 "MATERNAL EFFECT EMBRYO ARREST 23" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158730 AT5G44390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204579 AT1G30760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158720 AT5G44380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197950 AT1G26380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198000 AT1G26420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197935 AT1G26390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197900 AT1G26410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158700 AT5G44360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 304
PLN02441525 cytokinin dehydrogenase 99.53
TIGR01679419 bact_FAD_ox FAD-linked oxidoreductase. This model 99.42
TIGR01676541 GLDHase galactonolactone dehydrogenase. This model 99.39
TIGR01677 557 pln_FAD_oxido plant-specific FAD-dependent oxidore 99.28
TIGR01678438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 99.27
PRK11282352 glcE glycolate oxidase FAD binding subunit; Provis 99.17
PLN02805555 D-lactate dehydrogenase [cytochrome] 99.12
PLN02465573 L-galactono-1,4-lactone dehydrogenase 99.1
PRK11230499 glycolate oxidase subunit GlcD; Provisional 99.01
TIGR00387413 glcD glycolate oxidase, subunit GlcD. This protein 98.88
KOG1231505 consensus Proteins containing the FAD binding doma 98.47
COG0277459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 98.41
PRK13905298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 98.31
KOG4730518 consensus D-arabinono-1, 4-lactone oxidase [Defens 97.82
KOG1262543 consensus FAD-binding protein DIMINUTO [General fu 97.24
PRK13903363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 97.22
PRK11183564 D-lactate dehydrogenase; Provisional 97.02
PRK14652302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 96.66
PRK12436305 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 95.34
KOG1233613 consensus Alkyl-dihydroxyacetonephosphate synthase 95.31
KOG1232511 consensus Proteins containing the FAD binding doma 92.28
PF01565139 FAD_binding_4: FAD binding domain This is only a s 91.66
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information 
Probab=99.53  E-value=5.8e-14  Score=136.52  Aligned_cols=93  Identities=20%  Similarity=0.229  Sum_probs=73.5

Q ss_pred             cccEEEEeCCCcHHHHHHHHHhcCCcee----------ecCcce-----------------------------EEE-ecC
Q 047970            3 RKKTAWVQAGVTIGELYHRISEKSKYLG----------FPAGVR-----------------------------SIL-DRK   42 (304)
Q Consensus         3 ~~~~a~vg~G~~~~~v~~~l~~~~~g~~----------~p~G~c-----------------------------~iv-~~~   42 (304)
                      ++.+|+||+|++|.||++++.++  |++          .++|++                             +++ +++
T Consensus       134 ~~~~VtV~aG~~~~dv~~~l~~~--GlaP~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~leVVtadGevv~~s~  211 (525)
T PLN02441        134 DGPYVDVSGGELWIDVLKATLKH--GLAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGEVVTCSP  211 (525)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHC--CCccCCccccCceEEeEEcCCCCccccccccCcHHHhEEEEEEEeCCceEEEeCC
Confidence            46799999999999999999995  775          344544                             566 788


Q ss_pred             CCCchhHHHhhcCCCCceEEEEEEEEEEEecCCeEEEEEEEecchhhHHHHHHHHHHHh
Q 047970           43 SMGEDLFWALHGGGAASFGIIVAWKVNLVPVPSNVTVNTVTRTLEQDATKIFQKWQSAA  101 (304)
Q Consensus        43 ~~~~DLfWAlRGgG~~nfGVVT~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  101 (304)
                      ++|||||||+|||+ |+|||||++++|++|+|+.+....+.|+.   +.++++..+++.
T Consensus       212 ~~n~DLF~Av~Ggl-G~fGIIT~atlrL~Pap~~v~~~~~~y~~---~~~~~~d~~~li  266 (525)
T PLN02441        212 TQNSDLFFAVLGGL-GQFGIITRARIALEPAPKRVRWIRVLYSD---FSTFTRDQERLI  266 (525)
T ss_pred             CCChhHHHhhccCC-CCcEEEEEEEEEEEecCCceEEEEEEcCC---HHHHHHHHHHHH
Confidence            99999999999998 89999999999999998766555665642   455555555543

>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms] Back     alignment and domain information
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only] Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK11183 D-lactate dehydrogenase; Provisional Back     alignment and domain information
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only] Back     alignment and domain information
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query304
3vte_A518 Crystal Structure Of Tetrahydrocannabinolic Acid Sy 2e-47
4dns_A497 Crystal Structure Of Bermuda Grass Isoallergen Bg60 3e-40
3tsh_A500 Crystal Structure Of Phl P 4, A Grass Pollen Allerg 3e-39
3fw8_A495 Structure Of Berberine Bridge Enzyme, C166a Variant 1e-27
3fw9_A495 Structure Of Berberine Bridge Enzyme In Complex Wit 1e-27
3fwa_A497 Structure Of Berberine Bridge Enzyme, C166a Variant 1e-27
4ec3_A519 Structure Of Berberine Bridge Enzyme, H174a Variant 1e-27
3gsy_A519 Structure Of Berberine Bridge Enzyme In Complex Wit 1e-27
3fw7_A498 Structure Of Berberine Bridge Enzyme, H104a Variant 1e-27
3d2d_A538 Structure Of Berberine Bridge Enzyme In Complex Wit 1e-27
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa Length = 518 Back     alignment and structure 
Iteration: 1

 Score =  185 bits (470), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 123/359 (34%), Positives = 176/359 (49%), Gaps = 74/359 (20%)
Query: 2   LRKKTAWVQAGVTIGELYHRISEKSKYLGFPAG-------------------VRS----- 37
           +  +TAWV+AG T+GE+Y+ I+EK++ L FP G                   +R+     
Sbjct: 115 VHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAA 174
Query: 38  --------------ILDRKSMGEDLFWALHGGGAASFGIIVAWKXXXXXXXXXXXXXXXX 83
                         +LDRKSMGEDLFWA+ GGG  +FGII AWK                
Sbjct: 175 DNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVK 234
Query: 84  RTLE-QDATKIFQKWQSAADKLPEDLTCSAIFAVRN---------SNIVALFSSLFLGRA 133
           + +E     K+F KWQ+ A K  +DL     F  +N         + +   FSS+F G  
Sbjct: 235 KNMEIHGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGV 294
Query: 134 DQQWATYSHWVESLPELGLKKEDCMELSWVESIVYFD--RGFXXXXXXXXXXXXXRNYSK 191
           D      +   +S PELG+KK DC E SW+++ +++     F                 K
Sbjct: 295 DSLVDLMN---KSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKK 351
Query: 192 SFWKMRADFVMKPI----LVKGLEGMYDFFHEQGGKNLQVVAFPYSGKLAKIPESAISFP 247
           + + ++ D+V KPI    +VK LE +Y+   E  G  + V+ +PY G + +I ESAI FP
Sbjct: 352 TAFSIKLDYVKKPIPETAMVKILEKLYE---EDVGAGMYVL-YPYGGIMEEISESAIPFP 407
Query: 248 HRAGNIYH------WMEP-------NLVRKLSNYTTPYVSKNPRATYLNVRDLEIGRNN 293
           HRAG +Y       W +        N VR + N+TTPYVS+NPR  YLN RDL++G+ N
Sbjct: 408 HRAGIMYELWYTASWEKQEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTN 466
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens Length = 497 Back     alignment and structure
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity Length = 500 Back     alignment and structure
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant Length = 495 Back     alignment and structure
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Scoulerine Length = 495 Back     alignment and structure
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In Complex With (S)-Reticuline Length = 497 Back     alignment and structure
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In Complex With (S)-Reticuline Length = 519 Back     alignment and structure
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With Dehydroscoulerine Length = 519 Back     alignment and structure
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant Length = 498 Back     alignment and structure
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Reticuline Length = 538 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query304
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 1e-71
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 7e-71
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 8e-54
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 9e-54
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 2e-51
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 1e-49
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 7e-47
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 5e-41
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 6e-32
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 4e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 1e-05
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Length = 518 Back     alignment and structure
 Score =  229 bits (584), Expect = 1e-71
 Identities = 130/365 (35%), Positives = 185/365 (50%), Gaps = 67/365 (18%)

Query: 4   KKTAWVQAGVTIGELYHRISEKSKYLGFPAGV---------------------------- 35
            +TAWV+AG T+GE+Y+ I+EK++ L FP G                             
Sbjct: 117 SQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADN 176

Query: 36  ----------RSILDRKSMGEDLFWALHGGGAASFGIIVAWKVNLVPVPSNVTVNTVTRT 85
                       +LDRKSMGEDLFWA+ GGG  +FGII AWK+ LV VPS  T+ +V + 
Sbjct: 177 IIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKN 236

Query: 86  LE-QDATKIFQKWQSAADKLPEDLTCSAIFAVRNSN---------IVALFSSLFLGRADQ 135
           +E     K+F KWQ+ A K  +DL     F  +N           +   FSS+F G  D 
Sbjct: 237 MEIHGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVD- 295

Query: 136 QWATYSHWVESLPELGLKKEDCMELSWVESIVYFDRGF-LAKDLLKLETLLDRNY-SKSF 193
             +      +S PELG+KK DC E SW+++ +++           K E LLDR+   K+ 
Sbjct: 296 --SLVDLMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTA 353

Query: 194 WKMRADFVMKPILVKGLEGMYDFFHEQGGKNLQVVAFPYSGKLAKIPESAISFPHRAGNI 253
           + ++ D+V KPI    +  + +  +E+       V +PY G + +I ESAI FPHRAG +
Sbjct: 354 FSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIM 413

Query: 254 YH------WMEP-------NLVRKLSNYTTPYVSKNPRATYLNVRDLEIGRNN-KGYTSV 299
           Y       W +        N VR + N+TTPYVS+NPR  YLN RDL++G+ N     + 
Sbjct: 414 YELWYTASWEKQEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNY 473

Query: 300 KEASI 304
            +A I
Sbjct: 474 TQARI 478
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495 Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503 Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473 Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Length = 501 Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Length = 521 Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Length = 523 Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Length = 530 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query304
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 100.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 100.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 100.0
3tsh_A500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 100.0
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 100.0
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 100.0
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 100.0
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 100.0
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 100.0
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 99.97
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 99.39
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 99.28
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 99.15
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 99.12
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 99.08
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 99.08
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 99.04
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 99.0
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 98.87
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 98.66
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 98.51
2i0k_A 561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 98.42
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 98.32
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 98.23
3i99_A357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 97.89
1uxy_A340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 97.49
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 97.32
2gqt_A268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 97.05
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
Probab=100.00  E-value=1.6e-47  Score=371.71  Aligned_cols=295  Identities=42%  Similarity=0.761  Sum_probs=239.4

Q ss_pred             cccEEEEeCCCcHHHHHHHHHhcCCceeecCcce-------------------------------EEE-ec------CCC
Q 047970            3 RKKTAWVQAGVTIGELYHRISEKSKYLGFPAGVR-------------------------------SIL-DR------KSM   44 (304)
Q Consensus         3 ~~~~a~vg~G~~~~~v~~~l~~~~~g~~~p~G~c-------------------------------~iv-~~------~~~   44 (304)
                      ++++|+||+|+++++|+++|.++|+|+.+|+|.|                               ++| ++      +.+
T Consensus       116 ~~~~v~V~aG~~l~~l~~~l~~~g~gl~~~~G~~~~vgvgG~~~gGg~G~~s~~~G~~~D~V~~~evV~adG~iv~~~~~  195 (518)
T 3vte_A          116 HSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHLVNVDGKVLDRKSM  195 (518)
T ss_dssp             TTTEEEEETTCBHHHHHHHHHHHCTTEECCCCSCTTCBHHHHHHTCCCCTTHHHHCCGGGGEEEEEEECTTCCEECHHHH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHhCCCceecCCCCCCeeeeeeeCCCCCccccCCCCchhheEEEEEEEccCCeEEEeecc
Confidence            4679999999999999999999766899999998                               344 22      236


Q ss_pred             CchhHHHhhcCCCCceEEEEEEEEEEEecCCeEEEEEEEecch-hhHHHHHHHHHHHhccCCCCCceEEEEEeeC-----
Q 047970           45 GEDLFWALHGGGAASFGIIVAWKVNLVPVPSNVTVNTVTRTLE-QDATKIFQKWQSAADKLPEDLTCSAIFAVRN-----  118 (304)
Q Consensus        45 ~~DLfWAlRGgG~~nfGVVT~~~~k~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~p~~l~~~~~~~~~~-----  118 (304)
                      |+|||||+||||+|+|||||+++||++|+|+.+..+.+.|.++ +++.+++..|++++.++|+++++.+.+...+     
T Consensus       196 ~~DLf~a~rGgg~g~fGIVt~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~l~~~~~~~~~~~~p~~  275 (518)
T 3vte_A          196 GEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNH  275 (518)
T ss_dssp             CHHHHHHHTTSCGGGTCEEEEEEEECEECCSCEEEEEEEECCCHHHHHHHHHHHHHHGGGSCTTEEEEEEEEEESCC---
T ss_pred             ccchhhheecccCCCceEEEEEEEEEEeCCCeEEEEEEEecCCHHHHHHHHHHHHHHHHcCCHhHeEEEEEcccCCCCCC
Confidence            8999999999866999999999999999988788888887764 5689999999999999999999998886521     


Q ss_pred             ----CceEEEEEEEEecChhhhhhhhhhhhhhccccCCCcccceEeCHHHHHHHhhcccccc-chhh---hhhhhcccC-
Q 047970          119 ----SNIVALFSSLFLGRADQQWATYSHWVESLPELGLKKEDCMELSWVESIVYFDRGFLAK-DLLK---LETLLDRNY-  189 (304)
Q Consensus       119 ----g~~~~~~~~~~~G~~~e~~~~~~~l~~~l~~~~~~~~~~~~~~y~~~~~~~~~~~~~~-~~~~---~~~~~~~~~-  189 (304)
                          +.+.+.+.++|+|+.+++.   +.|+++++++++....+.+++|.+.+.+++ ++..+ +  +   ++.+.+... 
T Consensus       276 ~~~~~~~~~~~~~~~~G~~~~~~---~~l~~~~~~lg~~~~~~~~~~w~~~~~~~~-~~~~~~~--~~~~~~~l~~~~~~  349 (518)
T 3vte_A          276 GKNKTTVHGYFSSIFHGGVDSLV---DLMNKSFPELGIKKTDCKEFSWIDTTIFYS-GVVNFNT--ANFKKEILLDRSAG  349 (518)
T ss_dssp             ----CEEEEEEEEEEESCHHHHH---HHHHHHCGGGCCCGGGEEEECHHHHHHHTS-SSCCC-------CGGGGGCTTCS
T ss_pred             CcCCCceEEEEEEEEeCCHHHHh---hhhhhhhhhcCCCccceeecchhhhhhhhh-cCCccCC--ccchhhhhccCCcC
Confidence                2356788999999999999   888887778876667789999999988876 44322 2  2   344443322 


Q ss_pred             CccceeeeecccCCCCCHHHHHHHHHHHHhcCCccEEEEEEecCccccCCCCCCCccccccc-cEee-----cCCh----
Q 047970          190 SKSFWKMRADFVMKPILVKGLEGMYDFFHEQGGKNLQVVAFPYSGKLAKIPESAISFPHRAG-NIYH-----WMEP----  259 (304)
Q Consensus       190 ~~~~~~~~s~~~~~~l~~~~i~~l~~~~~~~p~~~~~v~~~~~gGa~~~~~~~~tAf~~R~~-~~~~-----w~~~----  259 (304)
                      .+.+||.||.|++++|++++|+.|++.+.+.|.+.+.+.|.++||+++++++++|||+||++ .|.+     |.++    
T Consensus       350 ~~~~~k~ks~~~~~~l~~~~i~~l~~~~~~~~~~~~~v~~~~~GGa~~~v~~~~TAf~hR~~~~~~~~~~~~w~~~~~~~  429 (518)
T 3vte_A          350 KKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTASWEKQEDNE  429 (518)
T ss_dssp             CCBEEEEEEEEESSCCCHHHHHHHHHGGGGSCTTTEEEEEEECCGGGGTSCTTSSSCCCCTTCCEEEEEEEEECCTTTHH
T ss_pred             cccceeeechhcccCCCHHHHHHHHHHHHhCCCCCeEEEEeecCccccCCCCCCCcccccCcceEEEEEEEecCCcchhH
Confidence            24567889999998899999999999888765546889999999999999999999999995 6665     8643    


Q ss_pred             ---HHHHHHHHccccccCCCCCceeccCCCCCCC-CCCCCCcceeecc
Q 047970          260 ---NLVRKLSNYTTPYVSKNPRATYLNVRDLEIG-RNNKGYTSVKEAS  303 (304)
Q Consensus       260 ---~w~~~~~~~l~~~~~~~~~g~YvNy~d~~~~-~~~~~~~~~~~~~  303 (304)
                         +|++++++.|.|+.++.++|+|+||+|.|++ .+.-..|+|++|+
T Consensus       430 ~~~~w~~~~~~~~~p~~~~~~~g~YvNy~D~dl~~~~~~~~~~~~~~~  477 (518)
T 3vte_A          430 KHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQAR  477 (518)
T ss_dssp             HHHHHHHHHHHHTGGGSCCTTCCCCTTSCCGGGCCCCTTSCCCHHHHH
T ss_pred             HHHHHHHHHHHHhccccCCCCccccccCCCccccccccccccchhhhh
Confidence               9999999999998765667999999999998 5422356676653
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 304
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 0.003
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 41  RKSMGEDLFWALHGGGAASFGIIVAWKVNLVP 72
            K +  DLF A+ GG    FG+I   ++ + P
Sbjct: 175 SKQLNADLFDAVLGGL-GQFGVITRARIAVEP 205

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query304
d1w1oa2206 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 99.5
d1wvfa2236 Flavoprotein subunit of p-cresol methylhydroxylase 98.82
d1e8ga2268 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 98.35
d2i0ka2216 Cholesterol oxidase {Brevibacterium sterolicum [Ta 98.28
d1uxya1198 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 94.86
d1hska1194 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 91.76
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.50  E-value=1.7e-14  Score=122.17  Aligned_cols=68  Identities=16%  Similarity=0.191  Sum_probs=59.4

Q ss_pred             cccEEEEeCCCcHHHHHHHHHhcCCceeecCcce---------------------------------------EEE-ecC
Q 047970            3 RKKTAWVQAGVTIGELYHRISEKSKYLGFPAGVR---------------------------------------SIL-DRK   42 (304)
Q Consensus         3 ~~~~a~vg~G~~~~~v~~~l~~~~~g~~~p~G~c---------------------------------------~iv-~~~   42 (304)
                      +.++++||+|+++.|+.++|.++  |+.+|.+.+                                       +++ +++
T Consensus        99 ~~~~v~v~aG~~~~~l~~~l~~~--Gl~~~~~~~~~~~tvGG~i~~~g~g~~s~~~G~~~d~v~~~evV~~~G~~~~~s~  176 (206)
T d1w1oa2          99 DGRYVDAGGEQVWIDVLRASLAR--GVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSK  176 (206)
T ss_dssp             TSSEEEEETTCBHHHHHHHHHTT--TEEESCCCSSCCSBHHHHHTTCCCSTTHHHHCCGGGSEEEEEEEETTSCEEEEES
T ss_pred             CCCEEEEEcceehhhhhhhhhcc--ccccccCCccCceEEeeeeccccceeccccccceeeeeeEEEEEcCCCcEEEECC
Confidence            56789999999999999999995  888765433                                       455 688


Q ss_pred             CCCchhHHHhhcCCCCceEEEEEEEEEEEec
Q 047970           43 SMGEDLFWALHGGGAASFGIIVAWKVNLVPV   73 (304)
Q Consensus        43 ~~~~DLfWAlRGgG~~nfGVVT~~~~k~~~~   73 (304)
                      ++|||||||+||++ |+|||||+++||++|+
T Consensus       177 ~~~~dl~~a~~g~~-G~~Giit~~tl~l~PA  206 (206)
T d1w1oa2         177 QLNADLFDAVLGGL-GQFGVITRARIAVEPA  206 (206)
T ss_dssp             SSSHHHHHHHTTCT-TCSEEEEEEEEEEEEC
T ss_pred             CCCHHHHHHHhhCC-CccEeEEEEEEEEEcC
Confidence            89999999999999 8999999999999995
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure