Citrus Sinensis ID: 048001

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------

MYIAITLKRYRAVKEVGKIKMSVGVIAYYQLVQVCQAEYFRQLLKPVT

cEEEEHHHHHHHHHHHcEEEEEEHHHHHHHHHHHHHHHHHHHHccccc

cEEEEEcccccEEEEHcEEEEEHHHHHHHHHHHHHHHHHHHHHccccc

MYIAITLKRYRAVKEVGKIKMSVGVIAYYQLVQVCQAEYFRQLLKPVT

*YIAITLKRYRAVKEVGKIKMSVGVIAYYQLVQVCQAEYFRQLL****

********RYRAVKEVGKIKMSVGVIAYYQLVQVCQAEYFRQLLKPV*

MYIAITLKRYRAVKEVGKIKMSVGVIAYYQLVQVCQAEYFRQLLKPVT

MYIAITLKRYRAVKEVGKIKMSVGVIAYYQLVQVCQAEYFRQLLKP**

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MYIAITLKRYRAVKEVGKIKMSVGVIAYYQLVQVCQAEYFRQLLKPVT

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		48
147767796		289	hypothetical protein VITISV_036406 [Viti	0.75	0.124	0.888	1e-10
186479051		48	conserved peptide upstream open reading	1.0	1.0	0.604	7e-07

>gi\|147767796\|emb\|CAN76054.1\| hypothetical protein VITISV_036406 [Vitis vinifera]	Back alignment and taxonomy information

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/36 (88%), Positives = 36/36 (100%)

Query: 1  MYIAITLKRYRAVKEVGKIKMSVGVIAYYQLVQVCQ 36
          MYIA+TLKRYRAVKEVGKIKMSVG+IA+YQL+QVCQ
Sbjct: 1  MYIAVTLKRYRAVKEVGKIKMSVGIIAHYQLMQVCQ 36

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|186479051\|ref\|NP_001117386.1\| conserved peptide upstream open reading frame 35 [Arabidopsis thaliana] gi\|332193034\|gb\|AEE31155.1\| conserved peptide upstream open reading frame 35 [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		48
TAIR\|locus:4515102609		48	CPuORF35 "conserved peptide up	1.0	1.0	0.604	7.6e-09

TAIR\|locus:4515102609 CPuORF35 "conserved peptide upstream open reading frame 35" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 29/48 (60%), Positives = 33/48 (68%)

Query:     1 MYIAITLKRYRAVKEVGKIKMSVGVIAYYQLVQVCQAEYFRQLLKPVT 48
             M I    K  R++KE+G   M+   IA YQ VQVCQAEYFRQLLKPVT
Sbjct:     1 MCIVGNKKGNRSLKEIGTFMMTTCFIANYQSVQVCQAEYFRQLLKPVT 48


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.140   0.393    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       48        48   0.00091  102 3  11 22  0.39    26
                                                     29  0.36    26


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  340 (36 KB)
  Total size of DFA:  56 KB (2058 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  5.01u 0.29s 5.30t   Elapsed:  00:00:00
  Total cpu time:  5.01u 0.29s 5.30t   Elapsed:  00:00:00
  Start:  Fri May 10 04:48:08 2013   End:  Fri May 10 04:48:08 2013

GO:0005739 "mitochondrion" evidence=ISM