Citrus Sinensis ID: 048027

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-----
Protein Sequence
NPSICGLPQDWLFKMHGILRTKSGDKGCSDVKVQQCCGHVYGGSSSGVQLQMPYGQCTIAIDSKYTSDQPRGVHISDTEVINDLKDVDESDNVEHSVIAIIDSAINFLAKDTMAGEPPWPFFNHNRDVGELSNDGSVFLSDSTENDGSALENSWEGYEDYLIQNFVNKKNERSSIDGFLFRKGGANGITMELGQRFKDEFHFRRAVEIQAMRDGIKLCVMENTSTLISCECSNLMCDWKVSAAKVRKGNVFVLKEIIPNHTCKRHNNNFALGTMWNAAKFLHLWVENPNIDLDRLGDEIERCSGIKYPTWKVEAIDKVAKFWLRTDHSYGYEHLLHYKNEMLKVNKDNIIKIQTKTYDDLVAPIFDRMFVLFADCSHAFKTTSRRLVIVDGWEIDSPYKSVMLVAVCRDGNNAVLPIAFCEVQEENLDSWSFFLKNLYEGLRMDYMDYGKGICIMCDGDNGVDEAVSEFLPYAQYRQCCFSIYNKLMKQFPHALVYSLFWSACRSTNKAAFQHQMMLLQCHNRDCYQWLIDRGCHTWALYCMPEWAKSTDITISATEQLRIWLLKYLDMNVANRFTAITKETAKIFQKRYLAGWDWVHDSITPTTRQQITQNVIEGDGWNIHSGADPKILTVTMNGLSFVVNKELAICSCGLWQLSGIPCPHACRCIIHWAASYADFVHDFMTVEVYRSTYGPGMKELPEICKWTPQLIDIVQPPLKRLIDPMNGDDETQVNLSN
Secondary Structure (PSIPRED)
ccccccccccHHEEEcccccccccccccccccccccccccccccccccEEEcccccEEEcccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccEEccHHHHHHHHHHHHHHccEEEEEEEEcccEEEEEEEccccccEEEEEEEccccEEEEEEEcccccccccccccccccccHHHHHccEEcccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccEEEEEEccccccccccHHHHHHHccccHHHHHHcccEEEEEccEEEEcccccEEEEEEEEcccccEEEEEEEEEcccccccHHHHHHHcccccccccccccccEEEEccccccccHHHHcccccccccHHHHHHHHHHHHccccccHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHcccccccccccccccEEEEccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHccccccEEEEEEccccEEEEEEEccEEEEEEEEccEEEEccccccccccHHHHHHHHHHHccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHcccccEEEEEccHHHHHcccccccccEEEEEEcccccHccccccccccccccccEEEEcccccccccccccccccEEEEcEccccccccccccccccccccccccccccccccccHHccccccHcccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccEEEcEEcccHHHHHHHHHHHHHHccccEEEEEccccEEEEEEccccccEEEEEEEcccccEEEEEEEccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHcccEEcHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHEEHHHHHHHHHHccccEEEEEcEEEccccccEEEEEEEEcccccEEEEEEEEEEccccHHHHHHHHHHHHHHccccccccccEEEEEcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHcHHHHHHHHHccHHHHHHHHccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccEEEEEccccEEEEEEEccEEEEEEEcccEccccccccccccHHHHHHHHHHccccHHHHHHHHccHHHHHHHHcccccccccccccccccccEccccccccccccccccEEEEcccc
Coil and Loop (DISEMBL)
npsicglpqdwlfkmhgilrtksgdkgcsdvkvqqccghvyggsssgvqlqmpygqctiaidskytsdqprgvhisdtevindlkdvdesdnveHSVIAIIDSAINFLakdtmageppwpffnhnrdvgelsndgsvflsdstendgsalenSWEGYEDYLIQNFVnkknerssidgflfrkggangitmelgqrfkdeFHFRRAVEIQAMRDGIKLCVMENTSTLISCECSNLMCDWKVSAAKVRKGNVFVLKeiipnhtckrhnnnfaLGTMWNAAKFLHLWvenpnidldrlgdeiercsgikyptwkVEAIDKVAKFWLrtdhsygyeHLLHYKNEMLKVNKDNIIKIQTKTYDDLVAPIFDRMFVLFADCSHAFKTTSRRLVIVdgweidspyKSVMLVAVCrdgnnavlpiAFCEVQEENLDSWSFFLKNLYEGLRMDymdygkgicimcdgdngvDEAVSEFLPYAQYRQCCFSIYNKLMKQFPHALVYSLFWSACRSTNKAAFQHQMMLLQCHNRDCYQWLIdrgchtwalycmpewakstdiTISATEQLRIWLLKYLDMNVANRFTAITKETAKIFQKRYLagwdwvhdsitpttrQQITQNViegdgwnihsgadpkILTVTMNGLSFVVNKELAICScglwqlsgipcphacrCIIHWAASYADFVHDFMTVEVYrstygpgmkelpeickwtpqlidivqpplkrlidpmngddetqvnlsn
Flexible Loop (DISEMBL)
npsicglpqdWLFKMHGILRTKSGDKGCSDVKVQQCCGHVYGGSSSGVQLQMPYGQCTIAIDSKYTSDQPRGVHISDTEVINDLKDVDESDNVEHSVIAIIDSAINFLAKDTMAGEPPWPFFNHNRDVGELSNDGSVFLSDSTENDGSALENSWEGYEDYLIQNFVNKKNERSSIDGFLFRKGGANGITMELGQRFKDEFHFRRAVEIQAMRDGIKLCVMENTSTLISCECSNLMCDWKVSAAKVRKGNVFVLKeiipnhtckrhNNNFALGTMWNAAKFLHLWVENPNIDLDRLGDEIERCSgikyptwkveAIDKVAKFWLRTDHSYGYEHLLHYKNEMLKVNKDNIIKIQTKTYDDLVAPIFDRMFVLFADCSHAFKTTSRRLVIVDGWEIDSPYKSVMLVAVCRDGNNAVLPIAFCEVQEENLDSWSFFLKNLYEGLRMDYMDYGKGICIMCDGDNGVDEAVSEFLPYAQYRQCCFSIYNKLMKQFPHALVYSLFWSACRSTNKAAFQHQMMLLQCHNRDCYQWLIDRGCHTWALYCMPEWAKSTDITISATEQLRIWLLKYLDMNVANRFTAITKETAKIFQKRYLAGWDWVHDSITPTTRQQITQNVIEGDGWNIHSGADPKILTVTMNGLSFVVNKELAICSCGLWQLSGIPCPHACRCIIHWAASYADFVHDFMTVEVYRSTYGPGMKELPEICKWTPQLIDIVQPPLKRLidpmngddetqvnlsn
Low Complexity Region (SEG)
NPSICGLPQDWLFKMHGILRTKSGDKGCSDVKVQQCCGHVYGGSSSGVQLQMPYGQCTIAIDSKYTSDQPRGVHISDTEVINDLKDVDESDNVEHSVIAIIDSAINFLAKDTMAGEPPWPFFNHNRDVGELSNDGSVFLSDSTENDGSALENSWEGYEDYLIQNFVNKKNERSSIDGFLFRKGGANGITMELGQRFKDEFHFRRAVEIQAMRDGIKLCVMENTSTLISCECSNLMCDWKVSAAKVRKGNVFVLKEIIPNHTCKRHNNNFALGTMWNAAKFLHLWVENPNIDLDRLGDEIERCSGIKYPTWKVEAIDKVAKFWLRTDHSYGYEHLLHYKNEMLKVNKDNIIKIQTKTYDDLVAPIFDRMFVLFADCSHAFKTTSRRLVIVDGWEIDSPYKSVMLVAVCRDGNNAVLPIAFCEVQEENLDSWSFFLKNLYEGLRMDYMDYGKGICIMCDGDNGVDEAVSEFLPYAQYRQCCFSIYNKLMKQFPHALVYSLFWSACRSTNKAAFQHQMMLLQCHNRDCYQWLIDRGCHTWALYCMPEWAKSTDITISATEQLRIWLLKYLDMNVANRFTAITKETAKIFQKRYLAGWDWVHDSITPTTRQQITQNVIEGDGWNIHSGADPKILTVTMNGLSFVVNKELAICSCGLWQLSGIPCPHACRCIIHWAASYADFVHDFMTVEVYRSTYGPGMKELPEICKWTPQLIDIVQPPLKRLIDPMNGDDETQVNLSN
Disordered region (IsUnstruct)
***ICGLPQDWLFKMHGILRTKSGDKGCSDVKVQQCCGHVYGGSSSGVQLQMPYGQCTIAIDSKYTSDQPRGVHISDTEVINDLKDVDESDNVEHSVIAIIDSAINFLAKDTMAGEPPWPFFNHNRDVG**********************NSWEGYEDYLIQNFVNKKNERSSIDGFLFRKGGANGITMELGQRFKDEFHFRRAVEIQAMRDGIKLCVMENTSTLISCECSNLMCDWKVSAAKVRKGNVFVLKEIIPNHTCKRHNNNFALGTMWNAAKFLHLWVENPNIDLDRLGDEIERCSGIKYPTWKVEAIDKVAKFWLRTDHSYGYEHLLHYKNEMLKVNKDNIIKIQTKTYDDLVAPIFDRMFVLFADCSHAFKTTSRRLVIVDGWEIDSPYKSVMLVAVCRDGNNAVLPIAFCEVQEENLDSWSFFLKNLYEGLRMDYMDYGKGICIMCDGDNGVDEAVSEFLPYAQYRQCCFSIYNKLMKQFPHALVYSLFWSACRSTNKAAFQHQMMLLQCHNRDCYQWLIDRGCHTWALYCMPEWAKSTDITISATEQLRIWLLKYLDMNVANRFTAITKETAKIFQKRYLAGWDWVHDSITPTTRQQITQNVIEGDGWNIHSGADPKILTVTMNGLSFVVNKELAICSCGLWQLSGIPCPHACRCIIHWAASYADFVHDFMTVEVYRSTYGPGMKELPEICKWTPQLIDIVQPPLKRL****************
Disordered Region (DISOPRED)
**SICGLPQDWLFKMHGILRTKSG*KGCSDVKVQQ*****************************************************************************************NR****************************************************LFRKGGANGITMELGQRFKDEFHFRRAVEIQAMRDGIKLCVMENTSTLISCECSNLMCDWKVSAAKVRKGNVFVLKEIIPNHTCKRHNNNFALGTMWNAAKFLHLWVENPNIDLDRLGDEIERCSGIKYPTWKVEAIDKVAKFWLRTDHSYGYEHLLHYKNEMLKVNKDNIIKIQTKTYDDLVAPIFDRMFVLFADCSHAFKTTSRRLVIVDGWEIDSPYKSVMLVAVCRDGNNAVLPIAFCEVQEENLDSWSFFLKNLYEGLRMDYMDYGKGICIMCDGDNGVDEAVSEFLPYAQYRQCCFSIYNKLMKQFPHALVYSLFWSACRSTNKAAFQHQMMLLQCHNRDCYQWLIDRGCHTWALYCMPEWAKSTDITISATEQLRIWLLKYLDMNVANRFTAITKETAKIFQKRYLAGWDWVHDSITPTTRQQITQNVIEGDGWNIHSGADPKILTVTMNGLSFVVNKELAICSCGLWQLSGIPCPHACRCIIHWAASYADFVHDFMTVEVYRSTYGPGMKELPEICKWTPQLIDIV***********************
Disordered Region (DISEMBL)
NPSICGLPQDWLFKMHGILRTKSGDKGCSDVKVQQCCGHVYGGSSSGVQLQMPYGQCTIAIDSKYTSDQPRGVHISDTEVINDLKDVDESDNVEHSVIAIIDSAINFLAKDTMAGEPPWPFFNHNRDVGELSNDGSVFLSD*********ENSWEGYEDYLIQNFVNKKNERSSIDGFLFRKGGANGITMELGQRFKDEFHFRRAVEIQAMRDGIKLCVMENTSTLISCECSNLMCDWKVSAAKVRKGNVFVLKEIIPNHTCKRHNNNFALGTMWNAAKFLHLWVENPNIDLDRLGDEIERCSGIKYPTWKVEAIDKVAKFWLRTDHSYGYEHLLHYKNEMLKVNKDNIIKIQTKTYDDLVAPIFDRMFVLFADCSHAFKTTSRRLVIVDGWEIDSPYKSVMLVAVCRDGNNAVLPIAFCEVQEENLDSWSFFLKNLYEGLRMDYMDYGKGICIMCDGDNGVDEAVSEFLPYAQYRQCCFSIYNKLMKQFPHALVYSLFWSACRSTNKAAFQHQMMLLQCHNRDCYQWLIDRGCHTWALYCMPEWAKSTDITISATEQLRIWLLKYLDMNVANRFTAITKETAKIFQKRYLAGWDWVHDSITPTTRQQITQNVIEGDGWNIHSGADPKILTVTMNGLSFVVNKELAICSCGLWQLSGIPCPHACRCIIHWAASYADFVHDFMTVEVYRSTYGPGMKELPEICKWTPQLIDIVQPPLKRLIDPMNGDDETQVNLSN
Disordered Region (DISPRO)
NPSICGLPQDWLFKMHGILRTKSGDKGCSDVKVQQCCGHVYGGSSSGVQLQMPYGQCTIAIDSKYTSDQPR*******EVIND*******************************************************************************************IDGFLFRKGGANGITMELGQRFKDEFHFRRAVEIQAMRDGIKLCVMENTSTLISCECSNLMCDWKVSAAKVRKGNVFVLKEIIPNHTCKRHNNNFALGTMWNAAKFLHLWVENPNIDLDRLGDEIERCSGIKYPTWKVEAIDKVAKFWLRTDHSYGYEHLLHYKNEMLKVNKDNIIKIQTKTYDDLVAPIFDRMFVLFADCSHAFKTTSRRLVIVDGWEIDSPYKSVMLVAVCRDGNNAVLPIAFCEVQEENLDSWSFFLKNLYEGLRMDYMDYGKGICIMCDGDNGVDEAVSEFLPYAQYRQCCFSIYNKLMKQFPHALVYSLFWSACRSTNKAAFQHQMMLLQCHNRDCYQWLIDRGCHTWALYCMPEWAKSTDITISATEQLRIWLLKYLDMNVANRFTAITKETAKIFQKRYLAGWDWVHDSITPTTRQQITQNVIEGDGWNIHSGADPKILTVTMNGLSFVVNKELAICSCGLWQLSGIPCPHACRCIIHWAASYADFVHDFMTVEVYRSTYGPGMKELPEICKWTPQLIDIVQPPLKRL*******DETQ*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
NPSICGLPQDWLFKMHGILRTKSGDKGCSDVKVQQCCGHVYGGSSSGVQLQMPYGQCTIAIDSKYTSDQPRGVHISDTEVINDLKDVDESDNVEHSVIAIIDSAINFLAKDTMAGEPPWPFFNHNRDVGELSNDGSVFLSDSTENDGSALENSWEGYEDYLIQNFVNKKNERSSIDGFLFRKGGANGITMELGQRFKDEFHFRRAVEIQAMRDGIKLCVMENTSTLISCECSNLMCDWKVSAAKVRKGNVFVLKEIIPNHTCKRHNNNFALGTMWNAAKFLHLWVENPNIDLDRLGDEIERCSGIKYPTWKVEAIDKVAKFWLRTDHSYGYEHLLHYKNEMLKVNKDNIIKIQTKTYDDLVAPIFDRMFVLFADCSHAFKTTSRRLVIVDGWEIDSPYKSVMLVAVCRDGNNAVLPIAFCEVQEENLDSWSFFLKNLYEGLRMDYMDYGKGICIMCDGDNGVDEAVSEFLPYAQYRQCCFSIYNKLMKQFPHALVYSLFWSACRSTNKAAFQHQMMLLQCHNRDCYQWLIDRGCHTWALYCMPEWAKSTDITISATEQLRIWLLKYLDMNVANRFTAITKETAKIFQKRYLAGWDWVHDSITPTTRQQITQNVIEGDGWNIHSGADPKILTVTMNGLSFVVNKELAICSCGLWQLSGIPCPHACRCIIHWAASYADFVHDFMTVEVYRSTYGPGMKELPEICKWTPQLIDIVQPPLKRLIDPMNGDDETQVNLSN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	735
356576716	750	PREDICTED: uncharacterized protein LOC10	0.782	0.766	0.230	4e-41
357132996	748	PREDICTED: uncharacterized protein LOC10	0.711	0.699	0.220	2e-40
224115958	572	predicted protein [Populus trichocarpa]	0.714	0.917	0.226	3e-40
356535187	752	PREDICTED: uncharacterized protein LOC10	0.786	0.768	0.228	5e-40
356505949	758	PREDICTED: uncharacterized protein LOC10	0.689	0.668	0.226	7e-39
224125676	581	predicted protein [Populus trichocarpa]	0.696	0.881	0.222	1e-38
6175165	757	Mutator-like transposase [Arabidopsis th	0.689	0.669	0.228	3e-38
225452988	749	PREDICTED: uncharacterized protein LOC10	0.687	0.674	0.225	3e-38
115489412	749	Os12g0597300 [Oryza sativa Japonica Grou	0.712	0.699	0.217	2e-37
125537276	747	hypothetical protein OsI_38982 [Oryza sa	0.712	0.701	0.217	3e-37

>gi|356576716|ref|XP_003556476.1| PREDICTED: uncharacterized protein LOC100811471 isoform 1 [Glycine max] gi|356576718|ref|XP_003556477.1| PREDICTED: uncharacterized protein LOC100811471 isoform 2 [Glycine max]

 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 136/591 (23%), Positives = 252/591 (42%), Gaps = 16/591 (2%)

Query: 118 PWPFFNHNRDVGELSNDGSVFLSDST-ENDG-SALENSWEGYEDYLIQNFVNKKNERSSI 175
           P P  NH   + E +ND +V  +    EN G +A++NS  G +     N ++ +  +  +
Sbjct: 106 PLPGQNHELVLSE-NNDLTVSENQELDENMGLAAVQNSEMGIDS---ANDMDVQQSQLVV 161

Query: 176 DGFLFRKGGANGITMELGQRFKDEFHFRRAVEIQAMRDGIKLCVMENTSTLISCECSNLM 235
              +  +  +    + +GQ F D    RRA+   A+    ++  +++  T  + +C++  
Sbjct: 162 PPIIQARTASPSYELSVGQEFPDVKSCRRALRDTAIALHFEMQTIKSDKTRFTAKCASEG 221

Query: 236 CDWKVSAAKVRKGNVFVLKEIIPNHTCK--RHNNNFALGTMWNAAKFLHLWVENPNIDLD 293
           C W++ AAK+     F ++ I  NHTC    H  +      W A        ENPN    
Sbjct: 222 CPWRIHAAKLPGVPTFTIRTIHENHTCGGISHLGHQQASVQWVANSVEQRLKENPNCKPK 281

Query: 294 RLGDEIERCSGIKYPTWKVEAIDKVAKFWLRTDHSYGYEHLLHYKNEMLKVNKDNIIKIQ 353
            + +EI R  GI     +     +     +R     GY  L  Y  ++ + N  +I  + 
Sbjct: 282 EILEEIHRVHGITLSYKQAWRGKERIMAAMRGSFEEGYRLLPQYCEQVKRTNPGSIASV- 340

Query: 354 TKTYDDLVAPIFDRMFVLFADCSHAFKTTSRRLVIVDGWEIDSPYKSVMLVAVCRDGNNA 413
              Y +     F R+F+ F    + F    R L+ +D   + S Y   +L+A   DG+ A
Sbjct: 341 ---YGNPADGCFQRLFISFQASIYGFLNPCRPLLGLDRTYLKSKYLGTLLLATGFDGDGA 397

Query: 414 VLPIAFCEVQEENLDSWSFFLKNLYEGLRMDYMDYGKGICIMCDGDNGVDEAVSEFLPYA 473
           + P+AF  V EEN D+W +FL  L+  L +   +  + + I+ D   G+ + V    P A
Sbjct: 398 LFPLAFGVVDEENDDNWMWFLSELHNLLEIHTENMPR-LTILSDRQKGIVDGVEANFPTA 456

Query: 474 QYRQCCFSIYNKLMKQFPHALVYSLFWSACRSTNKAAFQHQMMLLQCHNRDCYQWLIDRG 533
            +  C   + +   K+F + ++ +L W A  +     F+ +++ ++  ++D   W+    
Sbjct: 457 FHGFCMRHLSDSFRKEFNNTMLVNLLWEAANALTVIEFEAKILEIEEISQDAAYWIRRIP 516

Query: 534 CHTWALYCMPEWAKSTDITISATEQLRIWLLKYLDMNVANRFTAITKETAKIFQKRYLAG 593
              WA     E  +   +T +  E L  W+L+   + +      I ++    F +R    
Sbjct: 517 PRLWATAYF-EGHRFGHLTANIVESLNTWILEASGLPIIQMMECIRRQLMTWFNERRETS 575

Query: 594 WDWVHDSITPTTRQQITQNVIEGDGWNIHSGADPKILTVTMNGLSFVVNKELAICSCGLW 653
             W    + P+  +++ + +     + +    D +   +T  G + +V+     C C  W
Sbjct: 576 MQWT-SILVPSAERRVAEALDRARTYQVLRANDAEFEVITHEGTN-IVDIRNRCCLCRGW 633

Query: 654 QLSGIPCPHACRCIIHWAASYADFVHDFMTVEVYRSTYGPGMKELPEICKW 704
           QL G+PC HA   ++    +   F     TV  YR TY   +  +P+   W
Sbjct: 634 QLYGLPCAHAVAALLSCRQNVHRFTESCFTVATYRKTYSQTIHPIPDKSLW 684

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357132996|ref|XP_003568114.1| PREDICTED: uncharacterized protein LOC100835098 isoform 1 [Brachypodium distachyon] gi|357132998|ref|XP_003568115.1| PREDICTED: uncharacterized protein LOC100835098 isoform 2 [Brachypodium distachyon]

 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 121/548 (22%), Positives = 239/548 (43%), Gaps = 25/548 (4%)

Query: 190 MELGQRFKDEFHFRRAVEIQAMRDGIKLCVMENTSTLISCECSNLMCDWKVSAAKVRKGN 249
           + +GQ F D    RRA+   A+    ++  +++  T  + +C+   C W++ AAK+    
Sbjct: 172 LAVGQEFPDVMSCRRAIRDTAIACHFEIQTVKSDKTRFTAKCAAEGCPWRIHAAKLPGVP 231

Query: 250 VFVLKEIIPNHTCK--RHNNNFALGTMWNAAKFLHLWVENPNIDLDRLGDEIERCSGIKY 307
            F ++ I+ NH+C    H  +      W A+       ENP+     + +EI +  GI  
Sbjct: 232 TFSIRTILDNHSCVGINHLGHQQASVQWVASTVEERLRENPHCKPKEILEEIHKSHGITL 291

Query: 308 PTWKVEAIDKVAKFWLRTDHSYGYEHLLHYKNEMLKVNKDNIIKIQTKTYDDLVAPIFDR 367
              +     +     +R     GY  L  Y  ++ + N  +I +I     D+     F R
Sbjct: 292 SYKQAWRGKERIMATVRGSFEEGYRLLPEYCRQIERTNPGSIARIYGNPDDN----CFRR 347

Query: 368 MFVLFADCSHAFKTTSRRLVIVDGWEIDSPYKSVMLVAVCRDGNNAVLPIAFCEVQEENL 427
           +F+ F    + F    R L+ +D   + + Y   + +A   DG+ A+ P+AF  V +EN 
Sbjct: 348 LFISFYASIYGFVNACRPLIGLDKTTLKNKYLGTLFLATAFDGDGALFPLAFGVVDDEND 407

Query: 428 DSWSFFLKNLYEGLRMDYMDYGKGICIMCDGDNGVDEAVSEFLPYAQYRQCCFSIYNKLM 487
           ++W +FL  L+E L  +  +  + + I+ D   G+ + V    P A +  C   +     
Sbjct: 408 ENWIWFLSELHELLEKNTENMPR-LTILSDRRKGIVDGVDINFPTAFHGYCMRHLSETFR 466

Query: 488 KQFPHALVYSLFWSACRSTNKAAFQHQMMLLQCHNRDCYQWLIDRGCHTWA--LYCMPEW 545
           K+F ++++ +L W A        F+ +++ ++  +++   W+ +     WA   +  P +
Sbjct: 467 KEFNNSVLVNLLWEAASVLTATDFETKLLEIEDTSQEAVAWIREIPPRLWATAFFDGPRY 526

Query: 546 AKSTDITISATEQLRIWLLKYLDMNVANRFTAITKETAKIFQKRYLAGWDWVHDSITPTT 605
            +   +T + TE L  W+L    + +      + ++    F +R  A   W    + PT 
Sbjct: 527 GQ---LTANITESLNSWILDASSLPINQMMECLRRQLMTWFNERREASMQWT-TILVPTA 582

Query: 606 RQQITQNVIEGDGWNIHSGADPKILTVTMNGLSFVVNKELAICSCGLWQLSGIPCPHACR 665
            +++ + +     + +   ++ +   ++ +  + VV+    +C C  WQL G+PC H   
Sbjct: 583 ERRVQEAIERAQNYRVARASEAEFEVISPHEGTNVVDIRNRVCLCRGWQLYGMPCAHGVA 642

Query: 666 CIIHWAASYADFVHDFMTVEVYRSTYGPGMKELPEICKW--TPQ---------LIDIVQP 714
            ++    +   +   F T+ +YR TY   +  +P+   W  TP+         L  I+ P
Sbjct: 643 ALLSCRQNVHRYTESFFTIAMYRKTYSQTIHPIPDKTHWNETPEDQGEAEQGRLEVIINP 702

Query: 715 PLKRLIDP 722
           P K L  P
Sbjct: 703 P-KSLRPP 709

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115958|ref|XP_002332013.1| predicted protein [Populus trichocarpa] gi|222875238|gb|EEF12369.1| predicted protein [Populus trichocarpa]

 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 123/544 (22%), Positives = 230/544 (42%), Gaps = 19/544 (3%)

Query: 190 MELGQRFKDEFHFRRAVEIQAMRDGIKLCVMENTSTLISCECSNLMCDWKVSAAKVRKGN 249
           M +GQ F D F  RRA+   A+    ++  +++  T  + +C++  C W++ AAK+    
Sbjct: 1   MAVGQEFPDVFSCRRALRDTAIALHFEMQTIKSDKTRFTAKCASEGCPWRIHAAKLPGVP 60

Query: 250 VFVLKEIIPNHTCK--RHNNNFALGTMWNAAKFLHLWVENPNIDLDRLGDEIERCSGIKY 307
            F ++ I  +HTC    H  +      W A        ENPN     + +EI R  GI  
Sbjct: 61  TFTIRTIHESHTCGGISHLGHQQASVQWVANSVEQRLKENPNYKPKEILEEIHRVHGITL 120

Query: 308 PTWKVEAIDKVAKFWLRTDHSYGYEHLLHYKNEMLKVNKDNIIKIQTKTYDDLVAPIFDR 367
              +     +     +R     GY  L  Y +++ + N  +I  +     D+     F R
Sbjct: 121 SYKQAWRGKERIMAAMRGSFEEGYRLLPQYCDQVKRTNPGSIASVYGNPTDN----CFQR 176

Query: 368 MFVLFADCSHAFKTTSRRLVIVDGWEIDSPYKSVMLVAVCRDGNNAVLPIAFCEVQEENL 427
           +F+ F    + F    R L+ +D   + S Y   + +A   DG+ A+ P+AF  V EE  
Sbjct: 177 LFISFQASIYGFLNACRPLLGLDRTFLKSKYLGTLFLATGFDGDGALFPLAFGVVDEETE 236

Query: 428 DSWSFFLKNLYEGLRMDYMDYGKGICIMCDGDNGVDEAVSEFLPYAQYRQCCFSIYNKLM 487
           ++W +FL  L+  L ++  +  + + I+ D   G+ + V    P A +  C   +     
Sbjct: 237 ENWMWFLSELHSLLEINTENMPR-LTILSDRQKGIVDGVEANFPTAFHGFCMRHLSESFR 295

Query: 488 KQFPHALVYSLFWSACRSTNKAAFQHQMMLLQCHNRDCYQWLIDRGCHTWALYCMPEWAK 547
           K+F + ++ +L W A  +     F+ +++ ++  ++D   W+       WA     E  +
Sbjct: 296 KEFNNTMLVNLLWEAAHALTVIEFEAKILEIEEISQDAAYWIRRIPPRLWATAYF-EGTR 354

Query: 548 STDITISATEQLRIWLLKYLDMNVANRFTAITKETAKIFQKRYLAGWDWVHDSITPTTRQ 607
              +T +  E L  W+L+   + +      I ++    F +R      W    + P+  +
Sbjct: 355 FGHLTANIVESLNTWILEASGLPIIQMMECIRRQLMTWFNERRETSMQWT-SILVPSAER 413

Query: 608 QITQNVIEGDGWNIHSGADPKILTVTMNGLSFVVNKELAICSCGLWQLSGIPCPHACRCI 667
           ++ + +     + +    + +   ++  G + +V+     C C  WQL G+PC HA   +
Sbjct: 414 RVAEALERARTYQVLRANEAEFEVISHEGTN-IVDIRNRCCLCRGWQLYGLPCAHAVAAL 472

Query: 668 IHWAASYADFVHDFMTVEVYRSTYGPGMKELPEICKWTP---------QLIDIVQPPLKR 718
           +    +   F     TV  YR TY   +  +P+   WT          + I++V  P K 
Sbjct: 473 LSCRQNVHRFTESCFTVATYRKTYSQTIHPIPDKSLWTELSDGDPNSNKAIEVVINPPKS 532

Query: 719 LIDP 722
           L  P
Sbjct: 533 LRPP 536

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535187|ref|XP_003536130.1| PREDICTED: uncharacterized protein LOC100786116 [Glycine max]

 Score =  172 bits (437), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 135/591 (22%), Positives = 250/591 (42%), Gaps = 13/591 (2%)

Query: 118 PWPFFNHNRDVGELSNDGSVFLS-DSTENDG-SALENSWEGYEDYLIQNFVNKKNERSSI 175
           P P  NH+  + E +ND +V  + D  EN   S ++NS  G +     +  + +    S 
Sbjct: 105 PLPGQNHDLVLSE-NNDLTVSENQDLDENTALSVVQNSDMGIDSANDMDVQHPQLVAVST 163

Query: 176 DGFLFRKGGANGITMELGQRFKDEFHFRRAVEIQAMRDGIKLCVMENTSTLISCECSNLM 235
              +  +  +    + +GQ F D    RRA+   A+    ++  +++  T  + +C++  
Sbjct: 164 PPIIQARTASPSYELSVGQEFPDVKSCRRALRDTAIALHFEMQTIKSDKTRFTAKCASEG 223

Query: 236 CDWKVSAAKVRKGNVFVLKEIIPNHTCK--RHNNNFALGTMWNAAKFLHLWVENPNIDLD 293
           C W++ AAK+     F ++ I  NHTC    H  +      W A        ENPN    
Sbjct: 224 CPWRIHAAKLPGVPTFTIRTIHENHTCGGISHLGHQQASVQWVANSVEQRLKENPNCKPK 283

Query: 294 RLGDEIERCSGIKYPTWKVEAIDKVAKFWLRTDHSYGYEHLLHYKNEMLKVNKDNIIKIQ 353
            + +EI R  GI     +     +     +R     GY  L  Y  ++ + N  +I  + 
Sbjct: 284 EILEEIHRVHGITLSYKQAWRGKERIMAAMRGSFEEGYRLLPQYCEQVKRTNPGSIASV- 342

Query: 354 TKTYDDLVAPIFDRMFVLFADCSHAFKTTSRRLVIVDGWEIDSPYKSVMLVAVCRDGNNA 413
              Y +     F R+F+ F    + F    R L+ +D   + S Y   +L+A   DG+ A
Sbjct: 343 ---YGNQADGCFQRLFISFQASIYGFLNAFRPLLGLDRTYLKSKYLGTLLLATGFDGDGA 399

Query: 414 VLPIAFCEVQEENLDSWSFFLKNLYEGLRMDYMDYGKGICIMCDGDNGVDEAVSEFLPYA 473
           + P+AF  V EEN D+W +FL  L+  L +   +  + + I+ D   G+ + V    P A
Sbjct: 400 LFPLAFGVVDEENDDNWMWFLSELHNLLEIHTENMLR-LTILSDRQKGIVDGVEASFPTA 458

Query: 474 QYRQCCFSIYNKLMKQFPHALVYSLFWSACRSTNKAAFQHQMMLLQCHNRDCYQWLIDRG 533
            +  C   + +   K+F + ++ +L W A  +     F+ +++ ++  ++D   W+    
Sbjct: 459 FHGFCMQHLSDSFRKEFNNTMLVNLLWEAANALTVIEFEAKILEIEEISQDAAYWIRRIP 518

Query: 534 CHTWALYCMPEWAKSTDITISATEQLRIWLLKYLDMNVANRFTAITKETAKIFQKRYLAG 593
              WA     E  +   +T +  E L  W+L+   + +      I ++    F +R    
Sbjct: 519 PRLWATAYF-EGHRFGHLTANIVESLNTWILEASGLPIIQMMECIRRQLMTWFNERRETS 577

Query: 594 WDWVHDSITPTTRQQITQNVIEGDGWNIHSGADPKILTVTMNGLSFVVNKELAICSCGLW 653
             W    + P+  +++ + +     + +    D +   ++  G + +V+     C C  W
Sbjct: 578 MQWT-SILVPSAERRVAEALDRARTYQVLRANDAEFEVISHEGTN-IVDIRNRCCLCRGW 635

Query: 654 QLSGIPCPHACRCIIHWAASYADFVHDFMTVEVYRSTYGPGMKELPEICKW 704
           QL G+PC HA   ++    +   F     TV  YR TY   +  +P+   W
Sbjct: 636 QLYGLPCAHAVAALLSCRQNVHRFTESCFTVATYRKTYSQTIHPIPDKSLW 686

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505949|ref|XP_003521751.1| PREDICTED: uncharacterized protein LOC100795835 [Glycine max]

 Score =  169 bits (427), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 117/517 (22%), Positives = 217/517 (41%), Gaps = 10/517 (1%)

Query: 190 MELGQRFKDEFHFRRAVEIQAMRDGIKLCVMENTSTLISCECSNLMCDWKVSAAKVRKGN 249
           + +GQ F D    RRA+   A+    ++  +++  T  + +C +  C W++ AAK+    
Sbjct: 178 LAVGQEFPDVKSCRRALRDTAIALHFEMQTIKSDKTRFTAKCRSEGCPWRIHAAKLPGVP 237

Query: 250 VFVLKEIIPNHTCK--RHNNNFALGTMWNAAKFLHLWVENPNIDLDRLGDEIERCSGIKY 307
            F ++ +  +HTC    H  +      W A        ENP+     + +EI R  GI  
Sbjct: 238 TFTIRTVHESHTCGGISHLGHQQASVQWVATSVEQRLKENPDCKPKEILEEIHRVHGITL 297

Query: 308 PTWKVEAIDKVAKFWLRTDHSYGYEHLLHYKNEMLKVNKDNIIKIQTKTYDDLVAPIFDR 367
              +     +     +R     GY  L  Y  ++ + N  +I  +     D+     F R
Sbjct: 298 SYKQAWRGKERIMAAMRGSFEEGYRLLPQYCEQVKRTNPGSIASVYANPTDN----CFRR 353

Query: 368 MFVLFADCSHAFKTTSRRLVIVDGWEIDSPYKSVMLVAVCRDGNNAVLPIAFCEVQEENL 427
           +F+ F    + F    R L+ +D   + S Y   +L+A   DG+ A+ P+AF  V EEN 
Sbjct: 354 LFISFQASIYGFLNACRPLLELDRIYLKSKYLGTLLLATGFDGDGALFPLAFGVVDEEND 413

Query: 428 DSWSFFLKNLYEGLRMDYMDYGKGICIMCDGDNGVDEAVSEFLPYAQYRQCCFSIYNKLM 487
           D+W +FL  L+  L ++  +  + + I+ D   G+ + V    P A +  C   + +   
Sbjct: 414 DNWMWFLSELHNLLEINTENMPR-LTILSDRQKGIVDGVEANFPTAFHGFCMRHLIDSFR 472

Query: 488 KQFPHALVYSLFWSACRSTNKAAFQHQMMLLQCHNRDCYQWLIDRGCHTWALYCMPEWAK 547
           K+F + ++ +L W+A +      F+ +++ ++  ++D   W+     H WA     E   
Sbjct: 473 KEFNNTMLVNLLWNAAQVLTILEFESKVLEIEEISQDAAYWIRRVPPHLWATAYF-EGQS 531

Query: 548 STDITISATEQLRIWLLKYLDMNVANRFTAITKETAKIFQKRYLAGWDWVHDSITPTTRQ 607
              +T +  E L  W+L    + +      I ++    F +R      W    + P+  +
Sbjct: 532 FFHLTANIVESLNTWILDASGLPIIQMMECIRRQLMIWFNERRETSMQWP-SILVPSAER 590

Query: 608 QITQNVIEGDGWNIHSGADPKILTVTMNGLSFVVNKELAICSCGLWQLSGIPCPHACRCI 667
            + + +       +    D +   ++  G +  V+     C C  WQL G+PC HA   +
Sbjct: 591 HVAEALDRARTHQVLRATDAEFEVISHEGTN-TVDIRTRCCQCRGWQLYGLPCAHAVAAL 649

Query: 668 IHWAASYADFVHDFMTVEVYRSTYGPGMKELPEICKW 704
           +    +   F     TV  YR TY   +  +P+   W
Sbjct: 650 LSIRQNVHRFTESCFTVATYRKTYSQTIHPIPDKSLW 686

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125676|ref|XP_002319648.1| predicted protein [Populus trichocarpa] gi|222858024|gb|EEE95571.1| predicted protein [Populus trichocarpa]

 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 116/522 (22%), Positives = 220/522 (42%), Gaps = 10/522 (1%)

Query: 185 ANGITMELGQRFKDEFHFRRAVEIQAMRDGIKLCVMENTSTLISCECSNLMCDWKVSAAK 244
           A    + +GQ F D F  RRA+   A+    ++  +++  T  + +C+   C W++ AAK
Sbjct: 2   APNFELAVGQEFPDVFSCRRALRDTAIALHFEMQTIKSDKTRFTAKCATEGCPWRIHAAK 61

Query: 245 VRKGNVFVLKEIIPNHTCK--RHNNNFALGTMWNAAKFLHLWVENPNIDLDRLGDEIERC 302
           +     F ++ I  +HTC    H  +      W A        ENPN     + +EI R 
Sbjct: 62  LPGVPTFTIRTIHESHTCGGISHLGHQQASVQWVANSVEQRLKENPNYRPKEILEEIHRV 121

Query: 303 SGIKYPTWKVEAIDKVAKFWLRTDHSYGYEHLLHYKNEMLKVNKDNIIKIQTKTYDDLVA 362
            GI     +     +     +R     GY  L  Y +++ + N  +I  +     D+   
Sbjct: 122 HGITLSYKQAWRGKERIMAAMRGSFEEGYRLLPQYCDQVKRTNPGSIASVYGNPTDN--- 178

Query: 363 PIFDRMFVLFADCSHAFKTTSRRLVIVDGWEIDSPYKSVMLVAVCRDGNNAVLPIAFCEV 422
             F  +F+ F    + F    R L+ +D   + S Y   + +A   DG+ A+ P+AF  V
Sbjct: 179 -CFQHLFISFQASIYGFLNACRPLLGLDRTFLKSKYLGTLFLATGFDGDGALFPLAFGVV 237

Query: 423 QEENLDSWSFFLKNLYEGLRMDYMDYGKGICIMCDGDNGVDEAVSEFLPYAQYRQCCFSI 482
            EEN ++W +FL  L+  L ++  +  + + I+ D   G+ + V    P A +  C   +
Sbjct: 238 DEENDENWMWFLSELHNLLEINTENMPR-LTILSDRQKGIVDGVEANFPTAFHGFCMRHL 296

Query: 483 YNKLMKQFPHALVYSLFWSACRSTNKAAFQHQMMLLQCHNRDCYQWLIDRGCHTWALYCM 542
                K+F + ++ +L W A  +     F+ +++ ++  ++D   W+       WA    
Sbjct: 297 SESFRKEFNNTMLVNLLWEAAHALTVIEFEAKILEIEEVSQDAAYWIRRIPPRLWATAYF 356

Query: 543 PEWAKSTDITISATEQLRIWLLKYLDMNVANRFTAITKETAKIFQKRYLAGWDWVHDSIT 602
            E  +   +T +  E L  W+L+   + +      I ++    F +R      W    + 
Sbjct: 357 -EGTRFGHLTANIVESLNTWILEASGLPIIQMVECIRRQLMTWFNERRETSMQWT-SILV 414

Query: 603 PTTRQQITQNVIEGDGWNIHSGADPKILTVTMNGLSFVVNKELAICSCGLWQLSGIPCPH 662
           P+  +++ + +     + +    + +   ++  G + +V+     C C  WQL G+PC H
Sbjct: 415 PSAERRVAEALERARTYQVLRANEAEFEVISHEGTN-IVDIRNRCCLCRGWQLYGLPCAH 473

Query: 663 ACRCIIHWAASYADFVHDFMTVEVYRSTYGPGMKELPEICKW 704
           A   ++    +   F     TV  YR TY   +  +P+   W
Sbjct: 474 AVAALLSCRQNVHRFTESCFTVATYRKTYSQTIHPIPDKSLW 515

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6175165|gb|AAF04891.1|AC011437_6 Mutator-like transposase [Arabidopsis thaliana] gi|18389286|gb|AAL67086.1| putative Mutator transposase [Arabidopsis thaliana] gi|20465953|gb|AAM20162.1| putative mutator transposase [Arabidopsis thaliana]

 Score =  167 bits (422), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 118/517 (22%), Positives = 220/517 (42%), Gaps = 10/517 (1%)

Query: 190 MELGQRFKDEFHFRRAVEIQAMRDGIKLCVMENTSTLISCECSNLMCDWKVSAAKVRKGN 249
           + +GQ F D    RRA+   A+    ++  +++  T  + +CS+  C W+V AAK+    
Sbjct: 182 LTVGQEFPDVKSCRRALRDMAIALHFEMQTIKSDKTRFTAKCSSDGCPWRVHAAKLPGVP 241

Query: 250 VFVLKEIIPNHTCK--RHNNNFALGTMWNAAKFLHLWVENPNIDLDRLGDEIERCSGIKY 307
            F ++ I  +H+C    H  +      W A+       ENPN     + +EI R  GI  
Sbjct: 242 TFTIRTIHESHSCGGINHLGHQQASVQWVASSVEQRLRENPNCKPKEILEEIHRVHGITL 301

Query: 308 PTWKVEAIDKVAKFWLRTDHSYGYEHLLHYKNEMLKVNKDNIIKIQTKTYDDLVAPIFDR 367
              +     +     +R     GY  L  Y  ++ + N  +I  +     D+     F R
Sbjct: 302 SYKQAWRGKERIMATMRGSFEEGYRLLPQYCEQVKRTNPGSIASVYGSPADN----CFQR 357

Query: 368 MFVLFADCSHAFKTTSRRLVIVDGWEIDSPYKSVMLVAVCRDGNNAVLPIAFCEVQEENL 427
           +F+ F    + F    R L+ +D   + S Y   +L+A   DG+ A+ P+AF  V EEN 
Sbjct: 358 LFISFQASIYGFLNACRPLLGLDRTYLKSKYLGTLLLATGFDGDGALFPLAFGIVDEEND 417

Query: 428 DSWSFFLKNLYEGLRMDYMDYGKGICIMCDGDNGVDEAVSEFLPYAQYRQCCFSIYNKLM 487
           ++W +FL  L+  L  +  +  + + I+ D   G+ E V +  P A +  C   +     
Sbjct: 418 ENWMWFLCELHNLLETNTENMPR-LTILSDRQKGIVEGVEQNFPTAFHGFCMRHLSESFR 476

Query: 488 KQFPHALVYSLFWSACRSTNKAAFQHQMMLLQCHNRDCYQWLIDRGCHTWALYCMPEWAK 547
           K+F + L+ +  W A ++     F+ +++ ++  ++D   W+       WA     E  +
Sbjct: 477 KEFNNTLLVNYLWEAAQALTVIEFEAKILEIEEISQDAAYWIRRIPPRLWATAYF-EGQR 535

Query: 548 STDITISATEQLRIWLLKYLDMNVANRFTAITKETAKIFQKRYLAGWDWVHDSITPTTRQ 607
              +T +  E L  W+ +   + +      I ++    F +R      W    + PT  +
Sbjct: 536 FGHLTANIVESLNSWIAEASGLPIIQMMECIRRQLMTWFNERRETSMQWT-SILVPTAER 594

Query: 608 QITQNVIEGDGWNIHSGADPKILTVTMNGLSFVVNKELAICSCGLWQLSGIPCPHACRCI 667
           ++ + +     + +    + +   ++  G + +V+     C C  WQL G+PC HA   +
Sbjct: 595 RVAEALELARTYQVLRANEAEFEVISHEG-NNIVDIRNRCCLCRGWQLYGLPCAHAVAAL 653

Query: 668 IHWAASYADFVHDFMTVEVYRSTYGPGMKELPEICKW 704
           +    +   F     TV  YR TY   +  +P+   W
Sbjct: 654 LSCRQNVHRFTESCFTVATYRKTYSQTIHPIPDKSHW 690

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452988|ref|XP_002262784.1| PREDICTED: uncharacterized protein LOC100258751 [Vitis vinifera] gi|147858253|emb|CAN83921.1| hypothetical protein VITISV_011842 [Vitis vinifera]

 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 116/515 (22%), Positives = 219/515 (42%), Gaps = 10/515 (1%)

Query: 192 LGQRFKDEFHFRRAVEIQAMRDGIKLCVMENTSTLISCECSNLMCDWKVSAAKVRKGNVF 251
           +GQ F D    RRA+   A+    ++  +++  T  + +C++  C W++ AAK+     F
Sbjct: 177 VGQEFPDVKSCRRALRDTAIALHFEMQTIKSDKTRFTAKCASDGCPWRIHAAKLPGVPTF 236

Query: 252 VLKEIIPNHTCK--RHNNNFALGTMWNAAKFLHLWVENPNIDLDRLGDEIERCSGIKYPT 309
            ++ I   HTC    H  +      W A        ENPN     + +EI R  GI    
Sbjct: 237 TIRTIHEAHTCGGIAHLGHQQASVQWVANSVEQRLRENPNYKPKEILEEIHRVHGITLSY 296

Query: 310 WKVEAIDKVAKFWLRTDHSYGYEHLLHYKNEMLKVNKDNIIKIQTKTYDDLVAPIFDRMF 369
            +     +     +R     GY  L  Y +++ + N  +I  +     D+     F R+F
Sbjct: 297 KQAWRGKERIMAAMRGSFEEGYRLLPQYCDQVKRTNPGSIASVYGNPTDN----CFQRLF 352

Query: 370 VLFADCSHAFKTTSRRLVIVDGWEIDSPYKSVMLVAVCRDGNNAVLPIAFCEVQEENLDS 429
           + F    + F    R L+ +D   + S Y   +L A   DG+ A+ P+AF  V EEN ++
Sbjct: 353 ISFQASIYGFLNACRPLLGLDRTFLKSKYLGTLLFATGFDGDGALFPLAFGVVDEENDEN 412

Query: 430 WSFFLKNLYEGLRMDYMDYGKGICIMCDGDNGVDEAVSEFLPYAQYRQCCFSIYNKLMKQ 489
           W +FL  L+  L ++  +  + + I+ D   G+ + V    P A +  C   + +   K+
Sbjct: 413 WMWFLSELHNLLEVNTENMPR-LTILSDRQKGIVDGVEANFPTAFHGFCMRHLSDSFRKE 471

Query: 490 FPHALVYSLFWSACRSTNKAAFQHQMMLLQCHNRDCYQWLIDRGCHTWALYCMPEWAKST 549
           F + ++ +L W A  +     F+ +++ ++  ++D   W+       WA     E  +  
Sbjct: 472 FNNTMLVNLLWEAAHALTVIEFEAKILEIEEISQDAAYWIRRIPPRLWATAYF-EGTRFG 530

Query: 550 DITISATEQLRIWLLKYLDMNVANRFTAITKETAKIFQKRYLAGWDWVHDSITPTTRQQI 609
            +T +  E L  W+L+   + +      I ++    F +R      W    + P+  +++
Sbjct: 531 HLTANIVESLNTWILEASGLPIIQMMECIRRQLMTWFNERRETSMQWT-SILVPSAERRV 589

Query: 610 TQNVIEGDGWNIHSGADPKILTVTMNGLSFVVNKELAICSCGLWQLSGIPCPHACRCIIH 669
            + +     + +    + +   ++  G + +V+     C C  WQL G+PC HA   ++ 
Sbjct: 590 AEALERARTYQVLRANEAEFEVISHEGTN-IVDIRNRCCLCRGWQLYGLPCAHAVAALLS 648

Query: 670 WAASYADFVHDFMTVEVYRSTYGPGMKELPEICKW 704
              +   F     TV  YR TY   +  +P+   W
Sbjct: 649 CRQNVHRFTESCFTVATYRKTYSQTIHPIPDKTLW 683

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115489412|ref|NP_001067193.1| Os12g0597300 [Oryza sativa Japonica Group] gi|77556405|gb|ABA99201.1| transposon protein, putative, Mutator sub-class, expressed [Oryza sativa Japonica Group] gi|113649700|dbj|BAF30212.1| Os12g0597300 [Oryza sativa Japonica Group] gi|125579958|gb|EAZ21104.1| hypothetical protein OsJ_36747 [Oryza sativa Japonica Group]

 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 118/542 (21%), Positives = 227/542 (41%), Gaps = 18/542 (3%)

Query: 192 LGQRFKDEFHFRRAVEIQAMRDGIKLCVMENTSTLISCECSNLMCDWKVSAAKVRKGNVF 251
           +GQ F D    RRA+   A+    ++  +++  T  + +CS   C W++ AAK+     F
Sbjct: 176 VGQEFPDVMSCRRAIRNTAIACHFEIQTVKSDKTRFTAKCSADGCPWRIHAAKLPGVPTF 235

Query: 252 VLKEIIPNHTCK--RHNNNFALGTMWNAAKFLHLWVENPNIDLDRLGDEIERCSGIKYPT 309
            ++ I  NH+C    H  +      W A        ENP+     + +EI +  GI    
Sbjct: 236 SIRTIHDNHSCVGINHLGHQQASVQWVANTVEERLRENPHCKPKEILEEIHKSHGITLSY 295

Query: 310 WKVEAIDKVAKFWLRTDHSYGYEHLLHYKNEMLKVNKDNIIKIQTKTYDDLVAPIFDRMF 369
            +     +     +R     GY  L  Y  ++ + N  +I ++     D+     F R+F
Sbjct: 296 KQAWRGKERIMAAVRGSFEEGYRLLPEYCRQVERTNPGSIARVYGNPDDN----CFRRLF 351

Query: 370 VLFADCSHAFKTTSRRLVIVDGWEIDSPYKSVMLVAVCRDGNNAVLPIAFCEVQEENLDS 429
           + F    + F    R L+ +D   + + Y   + +A   DG+ A+ P+AF  V EE+ ++
Sbjct: 352 ISFHASIYGFVNACRPLIGLDRTILKNKYLGTLFLATGFDGDGALFPLAFGVVDEESDEN 411

Query: 430 WSFFLKNLYEGLRMDYMDYGKGICIMCDGDNGVDEAVSEFLPYAQYRQCCFSIYNKLMKQ 489
           W +FL  L+E L  +  +  + + I+ D   G+ + V    P A +  C  S+     K+
Sbjct: 412 WIWFLSELHELLEKNTENMPR-LTILSDRRKGIIDGVDFNFPTAFHGHCMRSLSETFRKE 470

Query: 490 FPHALVYSLFWSACRSTNKAAFQHQMMLLQCHNRDCYQWLIDRGCHTWALYCMPEWAKST 549
           F ++++ +L W A  +     F+ +++ ++  + +   W+       WA     E  +  
Sbjct: 471 FNNSVLVNLLWEAANALTVIEFETKLLEIEDTSPEAVCWIRRLPPRLWATAYF-EGTRYG 529

Query: 550 DITISATEQLRIWLLKYLDMNVANRFTAITKETAKIFQKRYLAGWDWVHDSITPTTRQQI 609
            +T + TE L  W+L    + +      I ++    F +R  A   W    + P   +++
Sbjct: 530 HLTANITESLNSWILDASGLPIIQMMECIRRQLMTWFNERREASMQWT-TILVPAAERRV 588

Query: 610 TQNVIEGDGWNIHSGADPKILTVTMNGLSFVVNKELAICSCGLWQLSGIPCPHACRCIIH 669
            + +    G+ +    + +   ++ +  + +V+     C C  WQL G+PC H    ++ 
Sbjct: 589 QEAIERARGYQVARANEAEFEVISPHEGTNIVDIRNRCCLCRGWQLYGVPCAHGVAALLS 648

Query: 670 WAASYADFVHDFMTVEVYRSTYGPGMKELPEICKWT---------PQLIDIVQPPLKRLI 720
              +   +     TV  YR TY   +  +P+   W             +D++  P K L 
Sbjct: 649 CRQNVHRYTESCFTVATYRKTYSQTIHPIPDKTLWNETSDQGQEEENKVDVIINPPKSLR 708

Query: 721 DP 722
            P
Sbjct: 709 PP 710

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125537276|gb|EAY83764.1| hypothetical protein OsI_38982 [Oryza sativa Indica Group]

 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 118/542 (21%), Positives = 227/542 (41%), Gaps = 18/542 (3%)

Query: 192 LGQRFKDEFHFRRAVEIQAMRDGIKLCVMENTSTLISCECSNLMCDWKVSAAKVRKGNVF 251
           +GQ F D    RRA+   A+    ++  +++  T  + +CS   C W++ AAK+     F
Sbjct: 174 VGQEFPDVMSCRRAIRNTAIACHFEIQTVKSDKTRFTAKCSADGCPWRIHAAKLPGVPTF 233

Query: 252 VLKEIIPNHTCK--RHNNNFALGTMWNAAKFLHLWVENPNIDLDRLGDEIERCSGIKYPT 309
            ++ I  NH+C    H  +      W A        ENP+     + +EI +  GI    
Sbjct: 234 SIRTIHDNHSCVGINHLGHQQASVQWVANTVEERLRENPHCKPKEILEEIHKSHGITLSY 293

Query: 310 WKVEAIDKVAKFWLRTDHSYGYEHLLHYKNEMLKVNKDNIIKIQTKTYDDLVAPIFDRMF 369
            +     +     +R     GY  L  Y  ++ + N  +I ++     D+     F R+F
Sbjct: 294 KQAWRGKERIMAAVRGSFEEGYRLLPEYCRQVERTNPGSIARVYGNPDDN----CFRRLF 349

Query: 370 VLFADCSHAFKTTSRRLVIVDGWEIDSPYKSVMLVAVCRDGNNAVLPIAFCEVQEENLDS 429
           + F    + F    R L+ +D   + + Y   + +A   DG+ A+ P+AF  V EE+ ++
Sbjct: 350 ISFHASIYGFVNACRPLIGLDRTILKNKYLGTLFLATGFDGDGALFPLAFGVVDEESDEN 409

Query: 430 WSFFLKNLYEGLRMDYMDYGKGICIMCDGDNGVDEAVSEFLPYAQYRQCCFSIYNKLMKQ 489
           W +FL  L+E L  +  +  + + I+ D   G+ + V    P A +  C  S+     K+
Sbjct: 410 WIWFLSELHELLEKNTENMPR-LTILSDRRKGIIDGVDFNFPTAFHGHCMRSLSETFRKE 468

Query: 490 FPHALVYSLFWSACRSTNKAAFQHQMMLLQCHNRDCYQWLIDRGCHTWALYCMPEWAKST 549
           F ++++ +L W A  +     F+ +++ ++  + +   W+       WA     E  +  
Sbjct: 469 FNNSVLVNLLWEAANALTVIEFETKLLEIEDTSPEAVCWIRRLPPRLWATAYF-EGTRYG 527

Query: 550 DITISATEQLRIWLLKYLDMNVANRFTAITKETAKIFQKRYLAGWDWVHDSITPTTRQQI 609
            +T + TE L  W+L    + +      I ++    F +R  A   W    + P   +++
Sbjct: 528 HLTANITESLNSWILDASGLPIIQMMECIRRQLMTWFNERREASMQWT-TILVPAAERRV 586

Query: 610 TQNVIEGDGWNIHSGADPKILTVTMNGLSFVVNKELAICSCGLWQLSGIPCPHACRCIIH 669
            + +    G+ +    + +   ++ +  + +V+     C C  WQL G+PC H    ++ 
Sbjct: 587 QEAIERARGYQVARANEAEFEVISPHEGTNIVDIRNRCCLCRGWQLYGVPCAHGVAALLS 646

Query: 670 WAASYADFVHDFMTVEVYRSTYGPGMKELPEICKWT---------PQLIDIVQPPLKRLI 720
              +   +     TV  YR TY   +  +P+   W             +D++  P K L 
Sbjct: 647 CRQNVHRYTESCFTVATYRKTYSQTIHPIPDKTLWNETSDQGQEEENKVDVIINPPKSLR 706

Query: 721 DP 722
            P
Sbjct: 707 PP 708

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	735
TAIR|locus:2197122	785	AT1G49920 "AT1G49920" [Arabido	0.703	0.658	0.233	5.7e-23
TAIR|locus:2014230	719	AT1G64260 "AT1G64260" [Arabido	0.678	0.694	0.204	9.3e-15
TAIR|locus:1006230722	750	AT1G64255 [Arabidopsis thalian	0.450	0.441	0.237	4.9e-14

TAIR|locus:2197122 AT1G49920 "AT1G49920" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 5.7e-23, P = 5.7e-23
 Identities = 134/574 (23%), Positives = 234/574 (40%)

Query:   187 GITMELGQRFKDEFHFRRAVEIQAMRDGIKLCVMENTSTLISCECSNLMCDWKVSAAKVR 246
             G TM +G  FKD    ++AV+  +++   K  + E    +   EC    C W + A++  
Sbjct:   177 GDTMRVGLCFKDLAEMKKAVDWCSIKRRQKCLLRETEKDVYVVECERWHCKWSICASRRE 236

Query:   247 KGNVFVLKEIIPNHTC-KRHNNNFALGTM-WNAAKFLHLWVENPNIDLDR---------L 295
             +  +F + E    H C   H N+F    + +   + + +       +LD+         L
Sbjct:   237 EDGLFEITECSGPHDCYPEHLNDFDAECIPFQIERVVRVQPTLSTAELDKWWEKKFGFAL 296

Query:   296 GDEIERCSGIKYPTWKVEAIDKVAKFWLRTDHSYGYEHLLHYKNEMLKVNKDNIIKIQ-- 353
                +E CS       KV+AI +    W   D S+    L+     +L  +   ++  Q  
Sbjct:   297 DQVVEHCSEGLVEDAKVKAIKRFFGDW---DQSF---RLIPKLMSVLHSSNGLLVDWQYD 350

Query:   354 TKTYDDLVAPIFDRMFVLFADCSHAFKTTSRRLVIVDGWEIDSPYKSVMLVAVCRDGNNA 413
             + T+D   A  F  +F  F+     F+   R L++VD   +   YK  +++A   D  N 
Sbjct:   351 SLTHDPEHAS-FRGLFWAFSQSIQGFQHC-RPLIVVDTKNLGGKYKMKLMIASAFDATNQ 408

Query:   414 VLPIAFCEVQEENLDSWSFFLKNLYEGLRMDYMDYGKGICIMCDGDNGV----DEAVSEF 469
               P+AF   +E ++DSW +FL  + E +        +GIC++   D  +    +E  S++
Sbjct:   409 YFPLAFAVTKEVSVDSWRWFLTRIREKVTQR-----QGICLISSPDPDILAVINEPGSQW 463

Query:   470 L-PYAQYRQCCFSIYNKLMKQFPHALVYSLFW---SACRSTNKAAFQHQMMLLQCHNRDC 525
               P+A +R C + + +KL    P    Y++ +    A  S+ K  F   M  ++  N + 
Sbjct:   464 KEPWAYHRFCLYHLCSKLCSVSP-GFDYNMHFLVDEAGSSSQKEEFDSYMKEIKERNPEA 522

Query:   526 YQWLIDRGCHTWALYCMPEWAKSTDITISATEQLRIWLLKYLDMNVANRFTAITKETAKI 585
             ++WL     H WAL    +  +   I    TE L     ++  + +A     +  +    
Sbjct:   523 WKWLDQFPPHQWAL--AHDDGRRYGIMRIDTEALFAVCKRFRKVAMAGGVMLLFGQLKDA 580

Query:   586 FQKRY-LAGWDWVH-DSITPTTRQQITQNVIEGDGWNI----------HSGADPKILTVT 633
             F + + L+     H D  T    +++ +   + D W I               PK  T  
Sbjct:   581 FAESFKLSRGSLKHGDVYTEHVMEKLEEFETDSDTWVITITPLERDAYQVSMAPKKKTRL 640

Query:   634 M----NGLSFVVNKELAICSCGLWQLSGIPCPHACRCIIHWAASYADFVHDFMTVEVYRS 689
             M    +  S +V      C+CG +Q +  PC HA         +   +V D  TVE Y  
Sbjct:   641 MGQSNDSTSGIVQLNDTTCTCGEFQKNKFPCLHALAVCDELKINPLQYVDDCYTVERYHK 700

Query:   690 TYGPGMKELPEICKWTPQLIDIVQPPL-KRLIDP 722
             TY      +PE+  W P+   +  P L   +I+P
Sbjct:   701 TYSAKFSPVPELSAW-PEAYGV--PTLIPPVIEP 731

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2014230 AT1G64260 "AT1G64260" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 9.3e-15, P = 9.3e-15
 Identities = 115/562 (20%), Positives = 231/562 (41%)

Query:   190 MELGQRFKDEFHFRRAVEIQAMRDGIKLCVMENTSTLISCECSNLMCDWKVSAAKVRK-G 248
             M LG  FKD    ++AV+   +R      V E    + + EC    C W + AA++ + G
Sbjct:   185 MHLGLCFKDRDELKKAVDWWCIRRRRNCIVRETEKEMYTFECVRWKCKWSLRAARMEEHG 244

Query:   249 NVFVLKEIIPNHTCKR-HNNNFALGTMWNAAKFLHLWVENPNIDLDRLGDEIERCSGIKY 307
              V + K   P HTC   + N+F   + + A +   +    P + +  L    +  +G + 
Sbjct:   245 LVEITKYTGP-HTCSHEYPNDFE--SEFAADEIERVVRIQPTLSIAELKKWWKEKTGYEL 301

Query:   308 PTWKVE--AIDKVAKFWLRTDHSYGYEHLLHYKNEMLKVNKDNIIKIQTKTYDDLVAPIF 365
              T K+    ++ + + +   D S+     L     +   +  N + +  + YD    P F
Sbjct:   302 QTSKMRDGKLEVIKRVFGDEDQSFRVMPKL-----ISAFHSSNGLLVDWQ-YDLFPNPDF 355

Query:   366 DR---MFVLFADCSHAFKTTSRRLVIVDGWEIDSPYKSVMLVAVCRDGNNAVLPIAFCEV 422
                  +F  F+     F+   R L++VD   ++  Y+  +++A   D  N   P+AF   
Sbjct:   356 ASFRGVFWSFSQSIEGFQHC-RPLIVVDTKSLNGKYQLKLMIASGVDAANKFFPLAFAVT 414

Query:   423 QEENLDSWSFFLKNLYEGLRMDYMDYGKGICIMCDGDNGVDEAVSE--FL---PYAQYRQ 477
             +E + DSW +F   + E +        K +C++      +   V+E   L   P+A ++ 
Sbjct:   415 KEVSTDSWRWFFTKIREKVTQR-----KDLCLISSPLRDIVAVVNEPGSLWQEPWAHHKF 469

Query:   478 CCFSIYNKLMKQFPHALVYSLFWSACRSTNKAAFQHQMMLLQCHNRDCYQWLIDRGCHTW 537
             C   + ++ +  F    + SL   A  +  K  F   M  ++  N + ++WL     H W
Sbjct:   470 CLNHLRSQFLGVFRDYNLESLVEQAGSTNQKEEFDSYMNDIKEKNPEAWKWLDQIPRHKW 529

Query:   538 AL-------YCMPEWAKSTDI---------TISATEQLRIW---LLKYLDMNVANRFTAI 578
             AL       Y + E  +             T++ T  + +    L    D ++++ ++++
Sbjct:   530 ALAHDSGLRYGIIEIDREALFAVCRGFPYCTVAMTGGVMLMFDELRSSFDKSLSSIYSSL 589

Query:   579 TKETAKIFQKRYLAGWDWVHDSITPTTRQQITQNVIEGDGWNIHSGADPKILTVTMNGLS 638
              +    ++ + ++   D + + +T +    ITQ  +E D + +   ++ +          
Sbjct:   590 NRGV--VYTEPFM---DKLEEFMTDSIPYVITQ--LERDSFKVSESSEKE---------E 633

Query:   639 FVVNKELAICSCGLWQLSGIPCPHACRCIIHWAASYADFVHDFMTVEVYRSTYGPGMKEL 698
             ++V   ++ C+C  +Q    PC HA         +   +V +  TVE Y  TY      +
Sbjct:   634 WIVQLNVSTCTCRKFQSYKFPCLHALAVFEKLKINPLQYVDECYTVEQYCKTYAATFSPV 693

Query:   699 PEICKWTPQL-IDIVQPPLKRL 719
             P++  W     +  + PP ++L
Sbjct:   694 PDVAAWPEDCRVPTLFPPSQQL 715

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:1006230722 AT1G64255 [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 4.9e-14, Sum P(2) = 4.9e-14
 Identities = 87/366 (23%), Positives = 157/366 (42%)

Query:   190 MELGQRFKDEFHFRRAVEIQAMRDGIKLCVMENTSTLISCECSNLMCDWKVSAAKVRK-G 248
             + +G  FKD    ++AV+  +++   K  V E        EC    C W + AA+++K G
Sbjct:   192 LRVGLCFKDGDELKKAVDWCSLKAQQKCVVRETAKDEYIFECIRWKCKWSLGAARMKKHG 251

Query:   249 NVFVLKEIIPNHTC-----KRHNNNFALGTMWNAAKFLHLWV--ENPNIDLDRLGDEIER 301
              V ++K   P HTC     +   + F    +  A +++      E       ++G E+E 
Sbjct:   252 LVEIIKYTGP-HTCHPIVPEDFKSEFETDEIERAVRYMPTQTISELKKWWKKKIGYELET 310

Query:   302 CSGIKYPTWKVEAIDKVAKFWLRTDHSYGYEHLLHYKNEMLKVNKDNIIKIQTKTYDDLV 361
              S ++    K +AI +V   W   D S+       +   M  +   N + +  K YD   
Sbjct:   311 -SDVRLA--KEKAIKRVFGDW---DQSFE-----DFPKLMSALCSSNGLLVDWK-YDLFP 358

Query:   362 APIFDR---MFVLFADCSHAFKTTSRRLVIVDGWEIDSPYKSVMLVAVCRDGNNAVLPIA 418
              P F     +F  F      F+   R L++VD   ++  Y+  +++A   D  N   P+A
Sbjct:   359 NPNFASFCGVFWAFPQSIEGFQHC-RPLIVVDTKNLNCEYQLKLMIASGVDAANKYFPLA 417

Query:   419 FCEVQEENLDSWSFFLKNLYEGLRMDYMDYGKGICIMCDGDNG----VDEAVSEFL-PYA 473
             F   +E + D W +FL     G+R + +   KG+C++          V+E+ S++  P+A
Sbjct:   418 FAVTKEVSTDIWRWFLT----GIR-EKVTQRKGLCLISSPHPDIIAVVNESGSQWQEPWA 472

Query:   474 QYRQCCFSIYNKLMKQFPHALVYSLFWSACRSTNKAAFQHQMMLLQCHNRDCYQWLIDRG 533
              +R      Y++  + FP   + +    A  ++ K  F   M  ++  N +  +WL    
Sbjct:   473 YHRFSLNHFYSQFSRVFPSFCLGARIRRAGSTSQKDEFVSYMNDIKEKNPEARKWLDQFP 532

Query:   534 CHTWAL 539
              + WAL
Sbjct:   533 QNRWAL 538

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: BRADI2G19940.1 annotation not avaliable (748 aa) (Brachypodium distachyon)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	735
pfam10551	88	pfam10551, MULE, MULE transposase domain	2e-11
pfam03108	67	pfam03108, DBD_Tnp_Mut, MuDR family transposase	4e-06
smart00575	28	smart00575, ZnF_PMZ, plant mutator transposase zin	2e-04

>gnl|CDD|220806 pfam10551, MULE, MULE transposase domain

 Score = 60.5 bits (147), Expect = 2e-11
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 5/89 (5%)

Query: 399 KSVMLVAVCRDGNNAVLPIAFCEVQEENLDSWSFFLKNLYEGLRMDYMDYGKGICIMCDG 458
            +    AV  D +    P+AF  V +E+ +SW++FL+ L        +     + I+ DG
Sbjct: 5   TNKYKGAVGVDHHGQGFPLAFALVSDESEESWTWFLEGL-----KKALGGRPPLTIISDG 59

Query: 459 DNGVDEAVSEFLPYAQYRQCCFSIYNKLM 487
           D G+ +A+ E  P A++R C + I   L 
Sbjct: 60  DKGLKKAIKEVFPNARHRLCLWHILRNLK 88

This domain was identified by Babu and colleagues. Length = 88

>gnl|CDD|190526 pfam03108, DBD_Tnp_Mut, MuDR family transposase

 Score = 44.5 bits (106), Expect = 4e-06
 Identities = 19/66 (28%), Positives = 37/66 (56%)

Query: 187 GITMELGQRFKDEFHFRRAVEIQAMRDGIKLCVMENTSTLISCECSNLMCDWKVSAAKVR 246
           G  +E+GQ FK +  F++AV   A+++  +  V ++  T    +C +  C W+V A+K++
Sbjct: 1   GPELEVGQVFKSKEEFKKAVRKYAIKNRFEFKVKKSDKTRYRAKCKDEGCPWRVRASKLK 60

Query: 247 KGNVFV 252
             + F 
Sbjct: 61  DSDTFQ 66

This region is found in plant proteins that are presumed to be the transposases for Mutator transposable elements. These transposons contain two ORFs. The molecular function of this region is unknown. Length = 67

>gnl|CDD|128845 smart00575, ZnF_PMZ, plant mutator transposase zinc finger

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 12/16 (75%), Positives = 13/16 (81%)

Query: 648 CSCGLWQLSGIPCPHA 663
           CSC  +QLSGIPC HA
Sbjct: 3   CSCRKFQLSGIPCRHA 18

Length = 28

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	735
PLN03097	846	FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis	100.0
PF10551	93	MULE: MULE transposase domain; InterPro: IPR018289	99.84
PF00872	381	Transposase_mut: Transposase, Mutator family; Inte	99.78
PF03108	67	DBD_Tnp_Mut: MuDR family transposase; InterPro: IP	99.65
COG3328	379	Transposase and inactivated derivatives [DNA repli	99.39
smart00575	28	ZnF_PMZ plant mutator transposase zinc finger.	98.77
PF08731	111	AFT: Transcription factor AFT; InterPro: IPR014842	98.52
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	98.22
PF04434	40	SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc f	98.01
cd06410	97	PB1_UP2 Uncharacterized protein 2. The PB1 domain	96.71
PF13610	140	DDE_Tnp_IS240: DDE domain	96.55
PF06782	470	UPF0236: Uncharacterised protein family (UPF0236);	94.89
PF01610	249	DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Aut	94.42
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	89.6
PF04684	496	BAF1_ABF1: BAF1 / ABF1 chromatin reorganising fact	88.5
PRK14702	262	insertion element IS2 transposase InsD; Provisiona	87.52
PHA02517	277	putative transposase OrfB; Reviewed	86.93
PRK09409	301	IS2 transposase TnpB; Reviewed	86.13
PF03050	271	DDE_Tnp_IS66: Transposase IS66 family ; InterPro:	85.03

>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional

Probab=100.00  E-value=4.1e-69  Score=625.69  Aligned_cols=468  Identities=14%  Similarity=0.164  Sum_probs=371.8

Q ss_pred             CCCCCCCCeeCCHHHHHHHHHHHHHHcCcEEEEeeecCc-------eEEEEeec--------------------------
Q 048027          187 GITMELGQRFKDEFHFRRAVEIQAMRDGIKLCVMENTST-------LISCECSN--------------------------  233 (735)
Q Consensus       187 ~~~l~vG~~F~s~ee~k~ai~~yAi~~~f~~~~~ks~~~-------r~~~~C~~--------------------------  233 (735)
                      ...+.+||+|.|.+|++++|..||...||++|+.++.++       ..+++|++                          
T Consensus        71 ~~~P~vGMeF~S~eeA~~FYn~YA~~~GFsVRi~~srrsk~~~~ii~r~fvCsreG~~~~~~~~~~~~~~~~~k~~~~~~  150 (846)
T PLN03097         71 NLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQTKQDPENG  150 (846)
T ss_pred             CccCcCCCeECCHHHHHHHHHHHHhhcCceEEeeceeccCCCCcEEEEEEEEcCCCCCcccccccccccccccccCcccc
Confidence            468999999999999999999999999999998755432       23466654                          


Q ss_pred             --------CCCceEEEEEEecCCceEEEeeecCCCccCCCCCcc-ccchhhHHHHHhhhhhhCCCCChhhHHHHHHHhcC
Q 048027          234 --------LMCDWKVSAAKVRKGNVFVLKEIIPNHTCKRHNNNF-ALGTMWNAAKFLHLWVENPNIDLDRLGDEIERCSG  304 (735)
Q Consensus       234 --------~gCpwrv~as~~~~~~~~~V~~~~~~HnC~~~~~~~-~~s~~~ia~~~~~~l~~~~~~~~~~I~~~l~~~~g  304 (735)
                              +||+++|.+.+. ..+.|+|+.+..+|||++..... ....+.+-..+...+....++.            +
T Consensus       151 ~~rR~~tRtGC~A~m~Vk~~-~~gkW~V~~fv~eHNH~L~p~~~~~~~~r~~~~~~~~~~~~~~~v~------------~  217 (846)
T PLN03097        151 TGRRSCAKTDCKASMHVKRR-PDGKWVIHSFVKEHNHELLPAQAVSEQTRKMYAAMARQFAEYKNVV------------G  217 (846)
T ss_pred             cccccccCCCCceEEEEEEc-CCCeEEEEEEecCCCCCCCCccccchhhhhhHHHHHhhhhcccccc------------c
Confidence                    379999999874 55789999999999999953222 1111111000000000000000            0


Q ss_pred             Cc--c-chhh-hHHHHHHhhhhhccCchhhHHHHHHHHHHHHhhCCCcEEEEEeeccccCCccceeeEEEechHhHHHHH
Q 048027          305 IK--Y-PTWK-VEAIDKVAKFWLRTDHSYGYEHLLHYKNEMLKVNKDNIIKIQTKTYDDLVAPIFDRMFVLFADCSHAFK  380 (735)
Q Consensus       305 ~~--y-~~~r-ak~~a~~~~~~~~g~~~~~y~~L~~y~~~l~~~NPg~~~~i~~~~~~~~~~~~f~~~F~~~~~s~~~f~  380 (735)
                      +.  . ...+ .|++.+         ...+...|..|+++++..||+++|+|++     |++++++++||+++.|+.+|.
T Consensus       218 ~~~d~~~~~~~~r~~~~---------~~gD~~~ll~yf~~~q~~nP~Ffy~~ql-----De~~~l~niFWaD~~sr~~Y~  283 (846)
T PLN03097        218 LKNDSKSSFDKGRNLGL---------EAGDTKILLDFFTQMQNMNSNFFYAVDL-----GEDQRLKNLFWVDAKSRHDYG  283 (846)
T ss_pred             cchhhcchhhHHHhhhc---------ccchHHHHHHHHHHHHhhCCCceEEEEE-----ccCCCeeeEEeccHHHHHHHH
Confidence            00  0 0111 122111         1235678999999999999999999988     789999999999999999999


Q ss_pred             hhCCcEEEEcCeEeecCCCCceEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHhhccCcCCCCCcEEEEecCch
Q 048027          381 TTSRRLVIVDGWEIDSPYKSVMLVAVCRDGNNAVLPIAFCEVQEENLDSWSFFLKNLYEGLRMDYMDYGKGICIMCDGDN  460 (735)
Q Consensus       381 ~~~~~vi~iD~T~~~~~y~~~ll~avg~d~~~~~~plafalv~~Et~esw~WfL~~l~~~~~~~~~~~~~p~~iisD~~~  460 (735)
                      + |++||++|+||++|+|++||+.++|+|+|+|++++||||+.+|+.++|.|||++|+++|++     ..|.+||||++.
T Consensus       284 ~-FGDvV~fDTTY~tN~y~~Pfa~FvGvNhH~qtvlfGcaLl~dEt~eSf~WLf~tfl~aM~g-----k~P~tIiTDqd~  357 (846)
T PLN03097        284 N-FSDVVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGG-----QAPKVIITDQDK  357 (846)
T ss_pred             h-cCCEEEEeceeeccccCcEEEEEEEecCCCCeEEEEEEEcccCchhhHHHHHHHHHHHhCC-----CCCceEEecCCH
Confidence            7 9999999999999999999999999999999999999999999999999999999999998     789999999999


Q ss_pred             hHHHHHHhhCCCCeeecccchHHHHHHhhCCc-----HHHHHHHHHHHc-cchHHHHHHHHHHHH-hhCchhhhHHHhc-
Q 048027          461 GVDEAVSEFLPYAQYRQCCFSIYNKLMKQFPH-----ALVYSLFWSACR-STNKAAFQHQMMLLQ-CHNRDCYQWLIDR-  532 (735)
Q Consensus       461 ~l~~Ai~~vfP~a~h~~C~~Hi~~N~~~~~~~-----~~~~~~f~~~~~-~~t~~eFe~~~~~l~-~~~~~~~~~L~~~-  532 (735)
                      +|.+||++|||++.||+|.|||++|+.+++..     +.+...|..+++ +.+++||+..|..|. +++.+.++||..+ 
T Consensus       358 am~~AI~~VfP~t~Hr~C~wHI~~~~~e~L~~~~~~~~~f~~~f~~cv~~s~t~eEFE~~W~~mi~ky~L~~n~WL~~LY  437 (846)
T PLN03097        358 AMKSVISEVFPNAHHCFFLWHILGKVSENLGQVIKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLY  437 (846)
T ss_pred             HHHHHHHHHCCCceehhhHHHHHHHHHHHhhHHhhhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence            99999999999999999999999999998863     589999999887 679999999999974 6789999999998 


Q ss_pred             -CcccceecccCCCcccccCCCCchHHHhHHHhh--hccCchhhHHHHHHHHHHHHHHHhhhh----------------c
Q 048027          533 -GCHTWALYCMPEWAKSTDITISATEQLRIWLLK--YLDMNVANRFTAITKETAKIFQKRYLA----------------G  593 (735)
Q Consensus       533 -~~~~Wa~a~~~~~~~~g~~TtN~~Es~N~~lk~--~r~~pi~~~le~i~~~l~~~~~~r~~~----------------~  593 (735)
                       .|++||++|+++.+..|+.||+++||+|++|++  .+..+|..|++.+...+..+..+..+.                .
T Consensus       438 ~~RekWapaY~k~~F~agm~sTqRSES~Ns~fk~yv~~~tsL~~Fv~qye~~l~~~~ekE~~aD~~s~~~~P~l~t~~pi  517 (846)
T PLN03097        438 EDRKQWVPTYMRDAFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPL  517 (846)
T ss_pred             HhHhhhhHHHhcccccCCcccccccccHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcccccccHH
Confidence             899999999999999999999999999999998  567888888888777666554432211                0


Q ss_pred             cccccCCCChHHHHHHHHHhhhcccceeee---CCCC--eEEEEEe--CCeEEEEEe----cCceEeecCccccccCcch
Q 048027          594 WDWVHDSITPTTRQQITQNVIEGDGWNIHS---GADP--KILTVTM--NGLSFVVNK----ELAICSCGLWQLSGIPCPH  662 (735)
Q Consensus       594 ~~~~~~~~tp~i~~~l~~~~~~~s~~~~~~---~~~~--~V~~v~~--~~~~~~V~l----~~~tCsC~~~~~~GiPC~H  662 (735)
                      ++..+.+|||.||++||++ +..+. .++.   ..++  ..|.|..  ....|.|..    ...+|+|++|+..||||+|
T Consensus       518 EkQAs~iYT~~iF~kFQ~E-l~~~~-~~~~~~~~~dg~~~~y~V~~~~~~~~~~V~~d~~~~~v~CsC~kFE~~GILCrH  595 (846)
T PLN03097        518 EKSVSGVYTHAVFKKFQVE-VLGAV-ACHPKMESQDETSITFRVQDFEKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRH  595 (846)
T ss_pred             HHHHHHHhHHHHHHHHHHH-HHHhh-heEEeeeccCCceEEEEEEEecCCCcEEEEEecCCCeEEeeccCeecCccchhh
Confidence            0111388999999999999 55444 1221   1122  2355543  234677754    3679999999999999999


Q ss_pred             hhHHHHHhcc--cccccccccccHHHHhh
Q 048027          663 ACRCIIHWAA--SYADFVHDFMTVEVYRS  689 (735)
Q Consensus       663 alav~~~~~~--~~~~yv~~~yt~~~~~~  689 (735)
                      ||+|+.+.++  .|..||.++||+.+-..
T Consensus       596 aLkVL~~~~v~~IP~~YILkRWTKdAK~~  624 (846)
T PLN03097        596 ALVVLQMCQLSAIPSQYILKRWTKDAKSR  624 (846)
T ss_pred             HHHHHhhcCcccCchhhhhhhchhhhhhc
Confidence            9999999997  79999999999998643

>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]

Probab=99.84  E-value=5.9e-21  Score=167.99  Aligned_cols=90  Identities=31%  Similarity=0.478  Sum_probs=86.3

Q ss_pred             CeEeecCCCCceEE---EEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHhhccCcCCCCCcEEEEecCchhHHHHHH
Q 048027          391 GWEIDSPYKSVMLV---AVCRDGNNAVLPIAFCEVQEENLDSWSFFLKNLYEGLRMDYMDYGKGICIMCDGDNGVDEAVS  467 (735)
Q Consensus       391 ~T~~~~~y~~~ll~---avg~d~~~~~~plafalv~~Et~esw~WfL~~l~~~~~~~~~~~~~p~~iisD~~~~l~~Ai~  467 (735)
                      |||++|+| ++++.   ++|+|++|+.+|+||+++++|+.++|.|||+.+++.++.     . |.+||||+++|+.+||+
T Consensus         1 ~T~~tn~~-~~l~~~~~~~~~d~~~~~~~v~~~l~~~e~~~~~~~~l~~~~~~~~~-----~-p~~ii~D~~~~~~~Ai~   73 (93)
T PF10551_consen    1 GTYKTNKY-GPLLYLMIAVGIDGNGRGFPVAFALVSSESEESYEWFLEKLKEAMPQ-----K-PKVIISDFDKALINAIK   73 (93)
T ss_pred             Cccccccc-cccceeceEEEEcCCCCEEEEEEEEEcCCChhhhHHHHHHhhhcccc-----C-ceeeeccccHHHHHHHH
Confidence            79999999 98886   999999999999999999999999999999999999985     5 99999999999999999


Q ss_pred             hhCCCCeeecccchHHHHHH
Q 048027          468 EFLPYAQYRQCCFSIYNKLM  487 (735)
Q Consensus       468 ~vfP~a~h~~C~~Hi~~N~~  487 (735)
                      ++||++.|++|.||+.+|++
T Consensus        74 ~vfP~~~~~~C~~H~~~n~k   93 (93)
T PF10551_consen   74 EVFPDARHQLCLFHILRNIK   93 (93)
T ss_pred             HHCCCceEehhHHHHHHhhC
Confidence            99999999999999999974

This domain is also found in a transposase for the insertion sequence element IS256 in transposon Tn4001 [].

>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=99.78  E-value=1.2e-19  Score=199.87  Aligned_cols=175  Identities=18%  Similarity=0.242  Sum_probs=152.5

Q ss_pred             cEEEEcCeEeecCCC-----CceEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHhhccCcCCCCCcEEEEecCc
Q 048027          385 RLVIVDGWEIDSPYK-----SVMLVAVCRDGNNAVLPIAFCEVQEENLDSWSFFLKNLYEGLRMDYMDYGKGICIMCDGD  459 (735)
Q Consensus       385 ~vi~iD~T~~~~~y~-----~~ll~avg~d~~~~~~plafalv~~Et~esw~WfL~~l~~~~~~~~~~~~~p~~iisD~~  459 (735)
                      ++|++||+|.+.+.+     ..+++++|+|.+|+..+||+.+...|+.++|.-||+.|++..-      ..|..||+|++
T Consensus       163 ~~l~iD~~~~kvr~~~~~~~~~~~v~iGi~~dG~r~vLg~~~~~~Es~~~W~~~l~~L~~RGl------~~~~lvv~Dg~  236 (381)
T PF00872_consen  163 PYLWIDGTYFKVREDGRVVKKAVYVAIGIDEDGRREVLGFWVGDRESAASWREFLQDLKERGL------KDILLVVSDGH  236 (381)
T ss_pred             cceeeeeeecccccccccccchhhhhhhhhcccccceeeeecccCCccCEeeecchhhhhccc------cccceeecccc
Confidence            789999999987744     4689999999999999999999999999999999999998765      46899999999


Q ss_pred             hhHHHHHHhhCCCCeeecccchHHHHHHhhCCcH---HHHHHHHHHHccchHHHHHHHHHHHHh----hCchhhhHHHhc
Q 048027          460 NGVDEAVSEFLPYAQYRQCCFSIYNKLMKQFPHA---LVYSLFWSACRSTNKAAFQHQMMLLQC----HNRDCYQWLIDR  532 (735)
Q Consensus       460 ~~l~~Ai~~vfP~a~h~~C~~Hi~~N~~~~~~~~---~~~~~f~~~~~~~t~~eFe~~~~~l~~----~~~~~~~~L~~~  532 (735)
                      +||..||.++||++.++.|.+|+++|+.++++.+   .+...++.+..+.+.++....++.+.+    ..|.+.++|++.
T Consensus       237 ~gl~~ai~~~fp~a~~QrC~vH~~RNv~~~v~~k~~~~v~~~Lk~I~~a~~~e~a~~~l~~f~~~~~~kyp~~~~~l~~~  316 (381)
T PF00872_consen  237 KGLKEAIREVFPGAKWQRCVVHLMRNVLRKVPKKDRKEVKADLKAIYQAPDKEEAREALEEFAEKWEKKYPKAAKSLEEN  316 (381)
T ss_pred             ccccccccccccchhhhhheechhhhhccccccccchhhhhhccccccccccchhhhhhhhcccccccccchhhhhhhhc
Confidence            9999999999999999999999999999999754   677777888778888877777777643    478999999988


Q ss_pred             CcccceecccCCCcccccCCCCchHHHhHHHhh
Q 048027          533 GCHTWALYCMPEWAKSTDITISATEQLRIWLLK  565 (735)
Q Consensus       533 ~~~~Wa~a~~~~~~~~g~~TtN~~Es~N~~lk~  565 (735)
                      ..+.|+..-|+...+--+.|||.+|++|+.||+
T Consensus       317 ~~~~~tf~~fP~~~~~~i~TTN~iEsln~~irr  349 (381)
T PF00872_consen  317 WDELLTFLDFPPEHRRSIRTTNAIESLNKEIRR  349 (381)
T ss_pred             cccccceeeecchhccccchhhhccccccchhh
Confidence            777887766665546677899999999999998

Transposases have been grouped into various families [, , ]. The mutator family of transposases consists of a number of elements that include, mutator from maize, IsT2 from Thiobacillus ferrooxidans, Is256 from Staphylococcus aureus, Is1201 from Lactobacillus helveticus, Is1081 from Mycobacterium bovis, IsRm3 from Rhizobium meliloti and others. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ]

Probab=99.65  E-value=6e-16  Score=127.43  Aligned_cols=67  Identities=25%  Similarity=0.559  Sum_probs=64.8

Q ss_pred             CCCCCCCCeeCCHHHHHHHHHHHHHHcCcEEEEeeecCceEEEEeecCCCceEEEEEEecCCceEEE
Q 048027          187 GITMELGQRFKDEFHFRRAVEIQAMRDGIKLCVMENTSTLISCECSNLMCDWKVSAAKVRKGNVFVL  253 (735)
Q Consensus       187 ~~~l~vG~~F~s~ee~k~ai~~yAi~~~f~~~~~ks~~~r~~~~C~~~gCpwrv~as~~~~~~~~~V  253 (735)
                      ||.|.+||+|+|++||+.||+.||++++|++++.+|+++|++++|...||||+|+|++.++++.|+|
T Consensus         1 n~~l~~G~~F~~~~e~k~av~~yai~~~~~~~v~ksd~~r~~~~C~~~~C~Wrv~as~~~~~~~~~I   67 (67)
T PF03108_consen    1 NPELEVGQTFPSKEEFKEAVREYAIKNGFEFKVKKSDKKRYRAKCKDKGCPWRVRASKRKRSDTFQI   67 (67)
T ss_pred             CCccccCCEECCHHHHHHHHHHHHHhcCcEEEEeccCCEEEEEEEcCCCCCEEEEEEEcCCCCEEEC
Confidence            4789999999999999999999999999999999999999999999999999999999999999986

The function of these proteins is unknown. More information about these proteins can be found at Protein of the Month: Transposase [].

>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=99.39  E-value=1.3e-12  Score=141.59  Aligned_cols=184  Identities=15%  Similarity=0.155  Sum_probs=140.9

Q ss_pred             CCcEEEEcCeEeecC--CCCceEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHhhccCcCCCCCcEEEEecCch
Q 048027          383 SRRLVIVDGWEIDSP--YKSVMLVAVCRDGNNAVLPIAFCEVQEENLDSWSFFLKNLYEGLRMDYMDYGKGICIMCDGDN  460 (735)
Q Consensus       383 ~~~vi~iD~T~~~~~--y~~~ll~avg~d~~~~~~plafalv~~Et~esw~WfL~~l~~~~~~~~~~~~~p~~iisD~~~  460 (735)
                      ..+++++||+|++.+  -+.++++|+|++.+|+-..+++.+-..|+ ..|.-||..|+...-      .....+++|+.+
T Consensus       144 ~~~~v~~D~~~~k~r~v~~~~~~ia~Gv~~eG~reilg~~~~~~e~-~~w~~~l~~l~~rgl------~~v~l~v~Dg~~  216 (379)
T COG3328         144 DYPYVYLDAKYVKVRSVRNKAVYIAIGVTEEGRREILGIWVGVRES-KFWLSFLLDLKNRGL------SDVLLVVVDGLK  216 (379)
T ss_pred             CceEEEEecceeehhhhhhheeeeeeccCcccchhhhceeeecccc-hhHHHHHHHHHhccc------cceeEEecchhh
Confidence            567899999999988  46689999999999999999999999999 999988888888644      335777889999


Q ss_pred             hHHHHHHhhCCCCeeecccchHHHHHHhhCCcHH---HHHHHHHHHccchHHHHHHHHHH----HHhhCchhhhHHHhcC
Q 048027          461 GVDEAVSEFLPYAQYRQCCFSIYNKLMKQFPHAL---VYSLFWSACRSTNKAAFQHQMML----LQCHNRDCYQWLIDRG  533 (735)
Q Consensus       461 ~l~~Ai~~vfP~a~h~~C~~Hi~~N~~~~~~~~~---~~~~f~~~~~~~t~~eFe~~~~~----l~~~~~~~~~~L~~~~  533 (735)
                      |+.+||.++||.+.+++|..|+.+|+..+...++   ....+..+..+.+.++-...|..    +....|...+|+.+..
T Consensus       217 gl~~aI~~v~p~a~~Q~C~vH~~Rnll~~v~~k~~d~i~~~~~~I~~a~~~e~~~~~~~~~~~~w~~~yP~i~~~~~~~~  296 (379)
T COG3328         217 GLPEAISAVFPQAAVQRCIVHLVRNLLDKVPRKDQDAVLSDLRSIYIAPDAEEALLALLAFSELWGKRYPAILKSWRNAL  296 (379)
T ss_pred             hhHHHHHHhccHhhhhhhhhHHHhhhhhhhhhhhhHHHHhhhhhhhccCCcHHHHHHHHHHHHhhhhhcchHHHHHHHHH
Confidence            9999999999999999999999999999887663   33333333444555544444444    4445788888888876


Q ss_pred             cccceecccCCCcccccCCCCchHHHhHHHhh-hccCchhh
Q 048027          534 CHTWALYCMPEWAKSTDITISATEQLRIWLLK-YLDMNVAN  573 (735)
Q Consensus       534 ~~~Wa~a~~~~~~~~g~~TtN~~Es~N~~lk~-~r~~pi~~  573 (735)
                      -+.|...-|+...+--+.|||.+|++|+.++. .+..+++.
T Consensus       297 ~~~~~F~~fp~~~r~~i~ttN~IE~~n~~ir~~~~~~~~fp  337 (379)
T COG3328         297 EELLPFFAFPSEIRKIIYTTNAIESLNKLIRRRTKVVGIFP  337 (379)
T ss_pred             HHhcccccCcHHHHhHhhcchHHHHHHHHHHHHHhhhccCC
Confidence            66665444433224567899999999998875 33334443

>smart00575 ZnF_PMZ plant mutator transposase zinc finger

Probab=98.77  E-value=2.2e-09  Score=71.90  Aligned_cols=27  Identities=52%  Similarity=0.936  Sum_probs=25.1

Q ss_pred             ceEeecCccccccCcchhhHHHHHhcc
Q 048027          646 AICSCGLWQLSGIPCPHACRCIIHWAA  672 (735)
Q Consensus       646 ~tCsC~~~~~~GiPC~Halav~~~~~~  672 (735)
                      .+|||++||..||||+|+|+|+...++
T Consensus         1 ~~CsC~~~~~~gipC~H~i~v~~~~~~   27 (28)
T smart00575        1 KTCSCRKFQLSGIPCRHALAAAIHIGL   27 (28)
T ss_pred             CcccCCCcccCCccHHHHHHHHHHhCC
Confidence            479999999999999999999998875

>PF08731 AFT: Transcription factor AFT; InterPro: IPR014842 AFT (activator of iron transcription) is an iron regulated transcriptional activator that regulates the expression of genes involved in iron homeostasis

Probab=98.52  E-value=5.1e-07  Score=79.61  Aligned_cols=69  Identities=17%  Similarity=0.314  Sum_probs=65.2

Q ss_pred             eCCHHHHHHHHHHHHHHcCcEEEEeeecCceEEEEeec------------------------------------------
Q 048027          196 FKDEFHFRRAVEIQAMRDGIKLCVMENTSTLISCECSN------------------------------------------  233 (735)
Q Consensus       196 F~s~ee~k~ai~~yAi~~~f~~~~~ks~~~r~~~~C~~------------------------------------------  233 (735)
                      |.+++|++.+|+.++...|+++.+.+|+.+.+.++|..                                          
T Consensus         1 F~~k~~ikpwlq~~~~~~Gi~iVIerSd~~ki~FkCk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~t~srk   80 (111)
T PF08731_consen    1 FDDKDEIKPWLQKIFYPQGIGIVIERSDKKKIVFKCKNGKRYRHKKKKKGQAQAQQKESTSGNKNKSSKKKKKKRTKSRK   80 (111)
T ss_pred             CCchHHHHHHHHHHhhhcCceEEEEecCCceEEEEEecCCCcccccccccccccccccccccccccccccccCCcccccc
Confidence            78999999999999999999999999999999999983                                          


Q ss_pred             CCCceEEEEEEecCCceEEEeeecCCCccCC
Q 048027          234 LMCDWKVSAAKVRKGNVFVLKEIIPNHTCKR  264 (735)
Q Consensus       234 ~gCpwrv~as~~~~~~~~~V~~~~~~HnC~~  264 (735)
                      .+|||+|+|........|.|..++..|+|++
T Consensus        81 ~~CPFriRA~yS~k~k~W~lvvvnn~HnH~l  111 (111)
T PF08731_consen   81 NTCPFRIRANYSKKNKKWTLVVVNNEHNHPL  111 (111)
T ss_pred             cCCCeEEEEEEEecCCeEEEEEecCCcCCCC
Confidence            1699999999999999999999999999974

This entry includes the paralogous pair of transcription factors AFT1 and AFT2.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=98.22  E-value=2.5e-06  Score=74.52  Aligned_cols=61  Identities=11%  Similarity=0.218  Sum_probs=53.8

Q ss_pred             HHHHHHHHHcCcEEEEeeecCc-------eEEEEeec----------------------CCCceEEEEEEecCCceEEEe
Q 048027          204 RAVEIQAMRDGIKLCVMENTST-------LISCECSN----------------------LMCDWKVSAAKVRKGNVFVLK  254 (735)
Q Consensus       204 ~ai~~yAi~~~f~~~~~ks~~~-------r~~~~C~~----------------------~gCpwrv~as~~~~~~~~~V~  254 (735)
                      ++|..||...||.++..++.+.       ++.++|.+                      .||||+|.+.+.+ ++.|.|+
T Consensus         1 ~fy~~yA~~~GF~vr~~~s~~~~~~~~~~~~~~~C~r~G~~~~~~~~~~~~~r~~~s~ktgC~a~i~v~~~~-~~~w~v~   79 (91)
T PF03101_consen    1 DFYNSYARRHGFSVRKSSSRKSKKNGEIKRVTFVCSRGGKYKSKKKNEEKRRRNRPSKKTGCKARINVKRRK-DGKWRVT   79 (91)
T ss_pred             CHHHHhcCcCCeEEEEeeeEeCCCCceEEEEEEEECCcccccccccccccccccccccccCCCEEEEEEEcc-CCEEEEE
Confidence            3789999999999999877654       78999985                      3899999999877 8999999


Q ss_pred             eecCCCccCCC
Q 048027          255 EIIPNHTCKRH  265 (735)
Q Consensus       255 ~~~~~HnC~~~  265 (735)
                      .+..+|||++.
T Consensus        80 ~~~~~HNH~L~   90 (91)
T PF03101_consen   80 SFVLEHNHPLC   90 (91)
T ss_pred             ECcCCcCCCCC
Confidence            99999999873

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.01  E-value=3.9e-06  Score=61.48  Aligned_cols=31  Identities=35%  Similarity=0.704  Sum_probs=27.6

Q ss_pred             EEecCceEeecCccccccCcchhhHHHHHhc
Q 048027          641 VNKELAICSCGLWQLSGIPCPHACRCIIHWA  671 (735)
Q Consensus       641 V~l~~~tCsC~~~~~~GiPC~Halav~~~~~  671 (735)
                      +++...+|||..|+..|.||+|++|++...+
T Consensus        10 ~~~~~~~CsC~~~~~~~~~CkHi~av~~~~~   40 (40)
T PF04434_consen   10 VSIEQASCSCPYFQFRGGPCKHIVAVLLALN   40 (40)
T ss_pred             ccccccEeeCCCccccCCcchhHHHHHHhhC
Confidence            5667899999999999999999999997653

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the SWIM (SWI2/SNF2 and MuDR) zinc-binding domain, which is found in a variety of prokaryotic and eukaryotic proteins, such as mitogen-activated protein kinase kinase kinase 1 (or MEKK1). It is also found in the related protein MEX (MEKK1-related protein X), a testis-expressed protein that acts as an E3 ubiquitin ligase through the action of E2 ubiquitin-conjugating enzymes in the proteasome degradation pathway; the SWIM domain is critical for MEX ubiquitination []. SWIM domains are also found in the homologous recombination protein Sws1 [], as well as in several hypothetical proteins. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding

>cd06410 PB1_UP2 Uncharacterized protein 2

Probab=96.71  E-value=0.00041  Score=61.05  Aligned_cols=55  Identities=9%  Similarity=0.236  Sum_probs=48.9

Q ss_pred             ccccccccceee--ccccchhHHHhhhccCCCCCccccc---c-CchhccccccccccCCc
Q 048027           39 HVYGGSSSGVQL--QMPYGQCTIAIDSKYTSDQPRGVHI---S-DTEVINDLKDVDESDNV   93 (735)
Q Consensus        39 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~   93 (735)
                      -|+||....|.|  +|++.++++|+++.++++...+++|   + |...+..+.+|+|..||
T Consensus        18 ~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~~~lky~Lp~edld~Lisv~~DeDl~~M   78 (97)
T cd06410          18 RYVGGETRIVSVDRSISFKELVSKLSELFGAGVVVTLKYQLPDEDLDALISVSNDEDLKNM   78 (97)
T ss_pred             EEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCceEEEEEcCCCCcceeEEecCcHHHHHH
Confidence            489999999999  8999999999999999985588999   3 44568999999999999

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>PF13610 DDE_Tnp_IS240: DDE domain

Probab=96.55  E-value=0.0011  Score=62.88  Aligned_cols=81  Identities=20%  Similarity=0.113  Sum_probs=68.7

Q ss_pred             CcEEEEcCeEeecCCCCceEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHhhccCcCCCCCcEEEEecCchhHH
Q 048027          384 RRLVIVDGWEIDSPYKSVMLVAVCRDGNNAVLPIAFCEVQEENLDSWSFFLKNLYEGLRMDYMDYGKGICIMCDGDNGVD  463 (735)
Q Consensus       384 ~~vi~iD~T~~~~~y~~~ll~avg~d~~~~~~plafalv~~Et~esw~WfL~~l~~~~~~~~~~~~~p~~iisD~~~~l~  463 (735)
                      ++.+.+|-||.+.+-+ ..++..++|.+++  +|.+-|.+.-+...=..||..+.+...      ..|..|+||+..+..
T Consensus         1 ~~~w~~DEt~iki~G~-~~yl~~aiD~~~~--~l~~~ls~~Rd~~aA~~Fl~~~l~~~~------~~p~~ivtDk~~aY~   71 (140)
T PF13610_consen    1 GDSWHVDETYIKIKGK-WHYLWRAIDAEGN--ILDFYLSKRRDTAAAKRFLKRALKRHR------GEPRVIVTDKLPAYP   71 (140)
T ss_pred             CCEEEEeeEEEEECCE-EEEEEEeeccccc--chhhhhhhhcccccceeeccccceeec------cccceeecccCCccc
Confidence            4678999999876533 4555788999999  899999999999999999999888775      469999999999999


Q ss_pred             HHHHhhCCCC
Q 048027          464 EAVSEFLPYA  473 (735)
Q Consensus       464 ~Ai~~vfP~a  473 (735)
                      .|++++.|..
T Consensus        72 ~A~~~l~~~~   81 (140)
T PF13610_consen   72 AAIKELNPEG   81 (140)
T ss_pred             hhhhhccccc
Confidence            9999998874

>PF06782 UPF0236: Uncharacterised protein family (UPF0236); InterPro: IPR009620 This is a group of proteins of unknown function

Probab=94.89  E-value=0.43  Score=54.53  Aligned_cols=133  Identities=17%  Similarity=0.204  Sum_probs=92.5

Q ss_pred             cCCHHHHHHHHHHHHHhhccCcCCCCCcEEEEecCchhHHHHHHhhCCCCeeecccchHHHHHHhhCC-cHHHHHHHHHH
Q 048027          424 EENLDSWSFFLKNLYEGLRMDYMDYGKGICIMCDGDNGVDEAVSEFLPYAQYRQCCFSIYNKLMKQFP-HALVYSLFWSA  502 (735)
Q Consensus       424 ~Et~esw~WfL~~l~~~~~~~~~~~~~p~~iisD~~~~l~~Ai~~vfP~a~h~~C~~Hi~~N~~~~~~-~~~~~~~f~~~  502 (735)
                      ..+.+-|.-+.+.+.+......   ..-+++.+|+...|.+++. .+|.+.|.+..+|+.+.+.+.++ .+.+.+.++++
T Consensus       235 ~~~~~~~~~v~~~i~~~Y~~~~---~~~iiingDGa~WIk~~~~-~~~~~~~~LD~FHl~k~i~~~~~~~~~~~~~~~~a  310 (470)
T PF06782_consen  235 ESAEEFWEEVLDYIYNHYDLDK---TTKIIINGDGASWIKEGAE-FFPKAEYFLDRFHLNKKIKQALSHDPELKEKIRKA  310 (470)
T ss_pred             cchHHHHHHHHHHHHHhcCccc---ceEEEEeCCCcHHHHHHHH-hhcCceEEecHHHHHHHHHHHhhhChHHHHHHHHH
Confidence            5567889999998888776542   3357888999999988776 99999999999999999999886 45677777777


Q ss_pred             HccchHHHHHHHHHHHHhh--Cc-------hhhhHHHhcCcccceecccCCCcccccCCCCchHHHhHHHhh
Q 048027          503 CRSTNKAAFQHQMMLLQCH--NR-------DCYQWLIDRGCHTWALYCMPEWAKSTDITISATEQLRIWLLK  565 (735)
Q Consensus       503 ~~~~t~~eFe~~~~~l~~~--~~-------~~~~~L~~~~~~~Wa~a~~~~~~~~g~~TtN~~Es~N~~lk~  565 (735)
                      .+.....++...++.+...  .+       ++..||..+....  .+|-.   +-|.......|+.++.+..
T Consensus       311 l~~~d~~~l~~~L~~~~~~~~~~~~~~~i~~~~~Yl~~n~~~i--~~y~~---~~~~~g~g~ee~~~~~~s~  377 (470)
T PF06782_consen  311 LKKGDKKKLETVLDTAESCAKDEEERKKIRKLRKYLLNNWDGI--KPYRE---REGLRGIGAEESVSHVLSY  377 (470)
T ss_pred             HHhcCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHCHHHh--hhhhh---ccCCCccchhhhhhhHHHH
Confidence            7777888888888877643  21       3455555541111  12211   1233444457777776643

>PF01610 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=94.42  E-value=0.088  Score=54.70  Aligned_cols=93  Identities=17%  Similarity=0.179  Sum_probs=69.5

Q ss_pred             EEEcCeEeecCCCCceEEEEEEcC--CCCEEEEEEEecccCCHHHHHHHHHHH-HHhhccCcCCCCCcEEEEecCchhHH
Q 048027          387 VIVDGWEIDSPYKSVMLVAVCRDG--NNAVLPIAFCEVQEENLDSWSFFLKNL-YEGLRMDYMDYGKGICIMCDGDNGVD  463 (735)
Q Consensus       387 i~iD~T~~~~~y~~~ll~avg~d~--~~~~~plafalv~~Et~esw~WfL~~l-~~~~~~~~~~~~~p~~iisD~~~~l~  463 (735)
                      |+||-+.....+..  +..+-+|.  +++. +  +.++++-+.++..-||..+ -....      ....+|++|...+..
T Consensus         1 lgiDE~~~~~g~~~--y~t~~~d~~~~~~~-i--l~i~~~r~~~~l~~~~~~~~~~~~~------~~v~~V~~Dm~~~y~   69 (249)
T PF01610_consen    1 LGIDEFAFRKGHRS--YVTVVVDLDTDTGR-I--LDILPGRDKETLKDFFRSLYPEEER------KNVKVVSMDMSPPYR   69 (249)
T ss_pred             CeEeeeeeecCCcc--eeEEEEECccCCce-E--EEEcCCccHHHHHHHHHHhCccccc------cceEEEEcCCCcccc
Confidence            46777776554443  44455555  3333 2  3478888888888888876 33333      567999999999999


Q ss_pred             HHHHhhCCCCeeecccchHHHHHHhhC
Q 048027          464 EAVSEFLPYAQYRQCCFSIYNKLMKQF  490 (735)
Q Consensus       464 ~Ai~~vfP~a~h~~C~~Hi~~N~~~~~  490 (735)
                      .|+++.||+|.+..-.||+++++.+.+
T Consensus        70 ~~~~~~~P~A~iv~DrFHvvk~~~~al   96 (249)
T PF01610_consen   70 SAIREYFPNAQIVADRFHVVKLANRAL   96 (249)
T ss_pred             ccccccccccccccccchhhhhhhhcc
Confidence            999999999999999999999887643

Transposases have been grouped into various families [, , ]. This family includes the IS204 [], IS1001 [], IS1096 [] and IS1165 [] transposases. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=89.60  E-value=0.76  Score=36.77  Aligned_cols=39  Identities=13%  Similarity=0.137  Sum_probs=32.2

Q ss_pred             ceEEEEeecCCCceEEEEEEecCCceEEEeeecCCCccC
Q 048027          225 TLISCECSNLMCDWKVSAAKVRKGNVFVLKEIIPNHTCK  263 (735)
Q Consensus       225 ~r~~~~C~~~gCpwrv~as~~~~~~~~~V~~~~~~HnC~  263 (735)
                      .|.-++|+..+||++-.+.+..++....++++.++|||+
T Consensus        21 pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~   59 (60)
T PF03106_consen   21 PRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHP   59 (60)
T ss_dssp             EEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred             eeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence            466799999999999999988878888999999999996

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>PF04684 BAF1_ABF1: BAF1 / ABF1 chromatin reorganising factor; InterPro: IPR006774 ABF1 is a sequence-specific DNA binding protein involved in transcription activation, gene silencing and initiation of DNA replication

Probab=88.50  E-value=0.9  Score=50.17  Aligned_cols=59  Identities=7%  Similarity=0.134  Sum_probs=51.6

Q ss_pred             CCCCCCCeeCCHHHHHHHHHHHHHHcCcEEEEeeec-CceEEEEeecCCCceEEEEEEec
Q 048027          188 ITMELGQRFKDEFHFRRAVEIQAMRDGIKLCVMENT-STLISCECSNLMCDWKVSAAKVR  246 (735)
Q Consensus       188 ~~l~vG~~F~s~ee~k~ai~~yAi~~~f~~~~~ks~-~~r~~~~C~~~gCpwrv~as~~~  246 (735)
                      +.-..+..|++.++-..+|..|-...++.|..+.|- .++|+|-|....|||+|..+...
T Consensus        20 ~~~~~~~~f~tl~~wy~v~ndyefq~rcpiilknsh~nkhftfachlk~c~fkillsy~g   79 (496)
T PF04684_consen   20 PQSAQARKFPTLEAWYNVINDYEFQSRCPIILKNSHRNKHFTFACHLKNCPFKILLSYCG   79 (496)
T ss_pred             cccccccCCCcHHHHHHHHhhhhhhhcCceeecccccccceEEEeeccCCCceeeeeecc
Confidence            344567889999999999999999999999998886 47899999999999999998543

ABF1 is known to remodel chromatin, and it is proposed that it mediates its effects on transcription and gene expression by modifying local chromatin architecture []. These functions require a conserved stretch of 20 amino acids in the C-terminal region of ABF1 (amino acids 639 to 662 Saccharomyces cerevisiae (P14164 from SWISSPROT)) []. The N-terminal two thirds of the protein are necessary for DNA binding, and the N terminus (amino acids 9 to 91 in S. cerevisiae) is thought to contain a novel zinc-finger motif which may stabilise the protein structure [].; GO: 0003677 DNA binding, 0006338 chromatin remodeling, 0005634 nucleus

>PRK14702 insertion element IS2 transposase InsD; Provisional

Probab=87.52  E-value=12  Score=39.39  Aligned_cols=75  Identities=11%  Similarity=0.019  Sum_probs=50.9

Q ss_pred             CCcEEEEcCeEeecCCCCceEEEEEEcCCCCEEEEEEEeccc-CCHHHHHHHHHHHH-Hhhcc-CcCCCCCcEEEEecCc
Q 048027          383 SRRLVIVDGWEIDSPYKSVMLVAVCRDGNNAVLPIAFCEVQE-ENLDSWSFFLKNLY-EGLRM-DYMDYGKGICIMCDGD  459 (735)
Q Consensus       383 ~~~vi~iD~T~~~~~y~~~ll~avg~d~~~~~~plafalv~~-Et~esw~WfL~~l~-~~~~~-~~~~~~~p~~iisD~~  459 (735)
                      -..+++.|-||.....++.++.++-+|...+ .++||++... .+.+.-.-+|+... ...+. ..   ..|..|.||+.
T Consensus        86 pn~~W~~DiT~~~~~~g~~~Yl~~viD~~sR-~ivg~~is~~~~~~~~v~~~l~~A~~~~~~~~~~---~~~~iihSD~G  161 (262)
T PRK14702         86 SNQRWCSDGFEFCCDNGERLRVTFALDCCDR-EALHWAVTTGGFNSETVQDVMLGAVERRFGNDLP---SSPVEWLTDNG  161 (262)
T ss_pred             CCCEEEeeeEEEEecCCcEEEEEEEEecccc-eeeeEEeccCcCCHHHHHHHHHHHHHHHhcccCC---CCCeEEEcCCC
Confidence            3478999999987654556888888888776 6889999874 56666555555433 32221 00   45789999987


Q ss_pred             hh
Q 048027          460 NG  461 (735)
Q Consensus       460 ~~  461 (735)
                      ..
T Consensus       162 sq  163 (262)
T PRK14702        162 SC  163 (262)
T ss_pred             cc
Confidence            64

>PHA02517 putative transposase OrfB; Reviewed

Probab=86.93  E-value=6.6  Score=41.40  Aligned_cols=73  Identities=12%  Similarity=-0.064  Sum_probs=46.8

Q ss_pred             CCcEEEEcCeEeecCCCCceEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHhhccCcCCCCCcEEEEecCchhH
Q 048027          383 SRRLVIVDGWEIDSPYKSVMLVAVCRDGNNAVLPIAFCEVQEENLDSWSFFLKNLYEGLRMDYMDYGKGICIMCDGDNGV  462 (735)
Q Consensus       383 ~~~vi~iD~T~~~~~y~~~ll~avg~d~~~~~~plafalv~~Et~esw~WfL~~l~~~~~~~~~~~~~p~~iisD~~~~l  462 (735)
                      -..+++.|-||....- +..++++.+|...+ +++|+.+...++.+...-+|+......+.     ..+..|.||+....
T Consensus       109 pn~~w~~D~t~~~~~~-g~~yl~~iiD~~sr-~i~~~~~~~~~~~~~~~~~l~~a~~~~~~-----~~~~i~~sD~G~~y  181 (277)
T PHA02517        109 PNQLWVADFTYVSTWQ-GWVYVAFIIDVFAR-RIVGWRVSSSMDTDFVLDALEQALWARGR-----PGGLIHHSDKGSQY  181 (277)
T ss_pred             CCCeEEeceeEEEeCC-CCEEEEEecccCCC-eeeecccCCCCChHHHHHHHHHHHHhcCC-----CcCcEeeccccccc
Confidence            3578999999986543 56677777776555 46778888888887654444443333331     22356778877643

>PRK09409 IS2 transposase TnpB; Reviewed

Probab=86.13  E-value=17  Score=39.02  Aligned_cols=77  Identities=12%  Similarity=0.060  Sum_probs=52.4

Q ss_pred             CCcEEEEcCeEeecCCCCceEEEEEEcCCCCEEEEEEEeccc-CCHHHHHHHHHH-HHHhhccCcCCCCCcEEEEecCch
Q 048027          383 SRRLVIVDGWEIDSPYKSVMLVAVCRDGNNAVLPIAFCEVQE-ENLDSWSFFLKN-LYEGLRMDYMDYGKGICIMCDGDN  460 (735)
Q Consensus       383 ~~~vi~iD~T~~~~~y~~~ll~avg~d~~~~~~plafalv~~-Et~esw~WfL~~-l~~~~~~~~~~~~~p~~iisD~~~  460 (735)
                      -..+++.|-||....-++.++.++-+|...+ .++||++... .+.+.-.-+|+. +....+....  ..|..|.||+..
T Consensus       125 pN~~W~tDiT~~~~~~g~~~Yl~~ViD~~sR-~ivg~~~s~~~~~~~~v~~~l~~a~~~~~~~~~~--~~~~iihSDrGs  201 (301)
T PRK09409        125 SNQRWCSDGFEFCCDNGERLRVTFALDCCDR-EALHWAVTTGGFNSETVQDVMLGAVERRFGNDLP--SSPVEWLTDNGS  201 (301)
T ss_pred             CCCEEEeeeEEEEeCCCCEEEEEEEeecccc-eEEEEEeccCCCCHHHHHHHHHHHHHHHhccCCC--CCCcEEecCCCc
Confidence            4579999999986654556888888888777 6889999876 566665555554 4333221000  357889999876


Q ss_pred             hH
Q 048027          461 GV  462 (735)
Q Consensus       461 ~l  462 (735)
                      ..
T Consensus       202 qy  203 (301)
T PRK09409        202 CY  203 (301)
T ss_pred             cc
Confidence            43

>PF03050 DDE_Tnp_IS66: Transposase IS66 family ; InterPro: IPR004291 Transposase proteins are necessary for efficient DNA transposition

Probab=85.03  E-value=1.1  Score=47.34  Aligned_cols=86  Identities=15%  Similarity=0.102  Sum_probs=55.7

Q ss_pred             CCcEEEEcCeEee----cCCC-CceEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHhhccCcCCCCCcEEEEec
Q 048027          383 SRRLVIVDGWEID----SPYK-SVMLVAVCRDGNNAVLPIAFCEVQEENLDSWSFFLKNLYEGLRMDYMDYGKGICIMCD  457 (735)
Q Consensus       383 ~~~vi~iD~T~~~----~~y~-~~ll~avg~d~~~~~~plafalv~~Et~esw~WfL~~l~~~~~~~~~~~~~p~~iisD  457 (735)
                      -.+++.+|-|...    ++.+ +-+.++++-+      .+.|.+.++-+.+.-.-+       +++      ..-+++||
T Consensus        66 ~~~~~~~DET~~~vl~~~~g~~~~~Wv~~~~~------~v~f~~~~sR~~~~~~~~-------L~~------~~GilvsD  126 (271)
T PF03050_consen   66 SSPVVHADETGWRVLDKGKGKKGYLWVFVSPE------VVLFFYAPSRSSKVIKEF-------LGD------FSGILVSD  126 (271)
T ss_pred             ccceeccCCceEEEeccccccceEEEeeeccc------eeeeeecccccccchhhh-------hcc------cceeeecc
Confidence            3578999988887    4433 3344444333      555666665555444333       332      13588999


Q ss_pred             CchhHHHHHHhhCCCCeeecccchHHHHHHhhCCc
Q 048027          458 GDNGVDEAVSEFLPYAQYRQCCFSIYNKLMKQFPH  492 (735)
Q Consensus       458 ~~~~l~~Ai~~vfP~a~h~~C~~Hi~~N~~~~~~~  492 (735)
                      +-.+-..     +..+.|+.|+.|+.|.+.+-...
T Consensus       127 ~y~~Y~~-----~~~~~hq~C~AH~~R~~~~~~~~  156 (271)
T PF03050_consen  127 GYSAYNK-----LAGITHQLCWAHLRRDFQDAAES  156 (271)
T ss_pred             ccccccc-----ccccccccccccccccccccccc
Confidence            9887654     33789999999999998876553

This family includes the bacterial insertion sequence (IS) element, IS66, from Agrobacterium tumefaciens []. IS66 may cause genetic and structural variations of the T region and the vir region of the octopine Ti plasmids []. More information about these proteins can be found at Protein of the Month: Transposase [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	735
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 8e-09
 Identities = 92/688 (13%), Positives = 186/688 (27%), Gaps = 195/688 (28%)

Query: 61  IDSKYTSDQPRGVHISDTEVINDLKDVDESDNVEHSVIAIIDSAINFLAKDTMAGEPPWP 120
            D K   D P+ + +S  E+      +  S +     + +  +    L+K     E    
Sbjct: 33  FDCKDVQDMPKSI-LSKEEI----DHIIMSKDAVSGTLRLFWT---LLSK----QEEMVQ 80

Query: 121 FFNHNRDVGELSNDGSVFLSDSTENDGSALENSWEGYEDYLIQNFVNKKNERSSIDGFLF 180
            F     V E+      FL    + +          Y +           +R   D  +F
Sbjct: 81  KF-----VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR---------DRLYNDNQVF 126

Query: 181 RKGGANGITMELGQRFKDEFHFRRAVEIQAMRDGIKLCV--MENT--STLISCECSNLMC 236
            K   +        R +     R+A  +  +R    + +  +  +  + +    C     
Sbjct: 127 AKYNVS--------RLQPYLKLRQA--LLELRPAKNVLIDGVLGSGKTWVALDVCL---- 172

Query: 237 DWKVSAAKVRKGNVFVLKEIIPNHTCKRHNNNFALGTMWNAAKFLHLWVENPNIDLDRLG 296
            +KV         +F L   + N  C        L  +      L+    N     D   
Sbjct: 173 SYKVQ--CKMDFKIFWLN--LKN--CNSPET--VLEMLQK---LLYQIDPNWTSRSDHSS 221

Query: 297 DEIERCSGIKYPTWKVEAIDKVAKFWLRTDHSYGYEHLLHYKNEMLKVNKDNIIKIQTKT 356
           +   R   I+          ++ +                Y+N +L +   N+       
Sbjct: 222 NIKLRIHSIQ---------AELRRLLKSKP----------YENCLLVL--LNV------- 253

Query: 357 YDDLVAPIFD---RMFVLFADCSHAFK---TTSRRLVIVDGWEIDSPYKSVMLVAVCRDG 410
            +      F+   ++ +              T+  + +       +P +   L+    D 
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313

Query: 411 NNAVLPIAFC-----------EVQEENLDSWSFFLKNLYEGLRM------------DYMD 447
               LP               E   + L +W  +     + L              +Y  
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373

Query: 448 YGKGICIMCDGDNGVDEAVSEFLPYAQYRQCCFSIYNKLMKQF-----PHALVYSL---- 498
               + +     + +   +   + +   +     + NKL K       P     S+    
Sbjct: 374 MFDRLSVFPPSAH-IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432

Query: 499 FWSACRSTNKAAFQHQMMLLQCHNRDCYQWLIDRGCHTWALYCMPEWAKSTD-------- 550
                +  N+ A  H+ ++      D Y   I +   +  L  +P +    D        
Sbjct: 433 LELKVKLENEYAL-HRSIV------DHYN--IPKTFDSDDL--IPPYL---DQYFYSHIG 478

Query: 551 ---ITISATEQLRIWLLKYLDMNVANRFTAITKETAKIFQKRYLAGWDW-VHDSITPTT- 605
                I   E++ ++ + +LD     RF        KI   R+     W    SI  T  
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDF----RFLE-----QKI---RH-DSTAWNASGSILNTLQ 525

Query: 606 -----RQQITQNVIEGDGWNIHSGADPKILTVTMNGLSFVVNKELAICSCGLWQLSGIPC 660
                +  I  N             DPK   +    L F+   E  +          I  
Sbjct: 526 QLKFYKPYICDN-------------DPKYERLVNAILDFLPKIEENL----------ICS 562

Query: 661 PHACRCIIHWAASYADFVHDFMTVEVYR 688
            +    ++  A        + +  E ++
Sbjct: 563 KY--TDLLRIALMAE---DEAIFEEAHK 585

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 3e-07
 Identities = 36/256 (14%), Positives = 77/256 (30%), Gaps = 56/256 (21%)

Query: 265 HNNNFALGTM-WNAAKFLHLWVENPNIDLD--------------RLGDEI----ERCSGI 305
           H+ +F  G   +     L ++ +    + D                 D I    +  SG 
Sbjct: 5   HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64

Query: 306 KYPTWKVEAIDK--VAKF---WLRTDHSYGYEHLLHYKNEMLKVNKDNIIKIQTKTYDDL 360
               W + +  +  V KF    LR ++ +    +   +     +     I+ + + Y+D 
Sbjct: 65  LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI-KTEQRQPSMMTRMYIEQRDRLYND- 122

Query: 361 VAPIFDRMFVLFADCSHAFKTTSRRL-----VIVDG-----WEIDSPYKSVMLVAVCRDG 410
              +F +  V         +     L     V++DG            K+ + + VC   
Sbjct: 123 -NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG-------KTWVALDVCLSY 174

Query: 411 ------NNAV--LPIAFCEVQEENLDSWSFFLKNLYEGLRMDYMDYGKGICIMCDGDNGV 462
                 +  +  L +  C   E  L+     L+ L   +  ++         +    + +
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEM----LQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 463 DEAVSEFLPYAQYRQC 478
              +   L    Y  C
Sbjct: 231 QAELRRLLKSKPYENC 246

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 2e-06
 Identities = 53/419 (12%), Positives = 108/419 (25%), Gaps = 136/419 (32%)

Query: 332 EHLLHYKNEMLKVNKDNIIK-IQTKTYDDLVAPIFDRMFVLFADCSHAFK-----TTSRR 385
           EH   YK ++L V +D  +     K   D+   I  +      +  H        + + R
Sbjct: 13  EHQYQYK-DILSVFEDAFVDNFDCKDVQDMPKSILSK-----EEIDHIIMSKDAVSGTLR 66

Query: 386 LVIVDGWEIDSPYKSVMLVAVCRDGNNAVLPIAFCEVQEENLDSWSFFLKNLYEGLRMDY 445
           L                   +       V      EV   N   +      L   ++ + 
Sbjct: 67  LFWT----------------LLSKQEEMV-QKFVEEVLRINYK-F------LMSPIKTEQ 102

Query: 446 MDYGKGICIMCDGDNGVDEAVSEFLPYAQYR-QCCFSIYNKLMKQFPHALV--------- 495
                   +  +  + +      F  Y   R Q    +   L++  P   V         
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162

Query: 496 -------------------YSLFWSACRSTNKAAFQHQMMLLQCHNRDCYQWLIDRGCHT 536
                              + +FW   ++ N      +M+    +  D       R  H+
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN--WTSRSDHS 220

Query: 537 WALYCMPEWAKSTDITISATEQLRIWLLKYLDMNVANRFTAITKETAKIF--QKRYLAGW 594
             +       ++    +  ++     LL  L  NV N       +    F    + L   
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLL-VLL-NVQN------AKAWNAFNLSCKILL-- 270

Query: 595 DWVHDSITPTTRQQITQNVIEGDGWNIHSGADPKILTVTMNGLSFVVNKELAICSCGLWQ 654
                    TTR +    V      +  S A    +++  + ++   ++  ++       
Sbjct: 271 ---------TTRFK---QVT-----DFLSAATTTHISLDHHSMTLTPDEVKSLL------ 307

Query: 655 LSGIPCPHACRCIIHWAASYADFVHDFMTVEVYRSTYGPGMKELP-EICKWTPQLIDIV 712
                              Y D        +           +LP E+    P+ + I+
Sbjct: 308 -----------------LKYLD-----CRPQ-----------DLPREVLTTNPRRLSII 333

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	735
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	86.99
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	86.62
3l3u_A	163	POL polyprotein; DNA integration, AIDS, integrase,	80.97

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=86.99  E-value=0.89  Score=37.10  Aligned_cols=39  Identities=10%  Similarity=0.125  Sum_probs=33.9

Q ss_pred             eEEEEeecCCCceEEEEEEecCCceEEEeeecCCCccCC
Q 048027          226 LISCECSNLMCDWKVSAAKVRKGNVFVLKEIIPNHTCKR  264 (735)
Q Consensus       226 r~~~~C~~~gCpwrv~as~~~~~~~~~V~~~~~~HnC~~  264 (735)
                      |--++|...||+++-.+.+...+....+++|..+|||..
T Consensus        38 RsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~   76 (78)
T 1wj2_A           38 RSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDL   76 (78)
T ss_dssp             EEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCC
T ss_pred             eEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCC
Confidence            456899999999999999877777778889999999976

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=86.62  E-value=0.83  Score=37.12  Aligned_cols=40  Identities=13%  Similarity=0.154  Sum_probs=34.6

Q ss_pred             eEEEEeecCCCceEEEEEEecCCceEEEeeecCCCccCCC
Q 048027          226 LISCECSNLMCDWKVSAAKVRKGNVFVLKEIIPNHTCKRH  265 (735)
Q Consensus       226 r~~~~C~~~gCpwrv~as~~~~~~~~~V~~~~~~HnC~~~  265 (735)
                      |--++|+..||+++=.+.+..++....+++|.++|||...
T Consensus        35 RsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p   74 (76)
T 2ayd_A           35 RSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP   74 (76)
T ss_dssp             EEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCC
T ss_pred             eeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCC
Confidence            5568999999999999998877778888999999999863

>3l3u_A POL polyprotein; DNA integration, AIDS, integrase, endonuclease, polynucleotidyl transferase, DNA binding, viral protein; 1.40A {Human immunodeficiency virus 1} PDB: 3ao1_A 3l3v_A* 3ovn_A* 3ao2_A* 3ao3_A* 3ao4_A* 3ao5_A* 2itg_A 1biz_A 1biu_A 1b9d_A 4dmn_A* 2b4j_A 1itg_A 1b92_A 1bl3_A 1bi4_A 1bis_A 1b9f_A 1bi4_B ...

Probab=80.97  E-value=8.2  Score=35.21  Aligned_cols=64  Identities=13%  Similarity=0.081  Sum_probs=44.4

Q ss_pred             CcEEEEcCeEeecCCCCceEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHhhccCcCCCCCcEEEEecCchhH
Q 048027          384 RRLVIVDGWEIDSPYKSVMLVAVCRDGNNAVLPIAFCEVQEENLDSWSFFLKNLYEGLRMDYMDYGKGICIMCDGDNGV  462 (735)
Q Consensus       384 ~~vi~iD~T~~~~~y~~~ll~avg~d~~~~~~plafalv~~Et~esw~WfL~~l~~~~~~~~~~~~~p~~iisD~~~~l  462 (735)
                      -.++.+|.|+..++     ++++.+|...+.. .++.+ .+++.+.-.-+|..+...++        +..|.||+....
T Consensus         9 ~~~w~~D~t~~~g~-----y~~~~iD~~sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~~--------~~~i~sD~G~~f   72 (163)
T 3l3u_A            9 PGIWQLDCTHLEGK-----VILVAVHVASGYI-EAEVI-PAETGQETAYFLLKLAGRWP--------VKTVHTDNGSNF   72 (163)
T ss_dssp             TTEEEEEEEEETTE-----EEEEEEETTTCCE-EEEEE-SSCCHHHHHHHHHHHHHHSC--------CCEEEECCCGGG
T ss_pred             CCEEEEEecccCCc-----EEEEEEecCCCcE-EEEEe-CCCcHHHHHHHHHHHHHHcC--------CcEEeecChHhh
Confidence            46889999998543     5677778776654 66665 56677776666666555543        468999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	735
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	91.67
d1c6va_	159	Retroviral integrase, catalytic domain {Simian imm	81.82

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.67  E-value=0.13  Score=39.24  Aligned_cols=40  Identities=10%  Similarity=0.113  Sum_probs=34.7

Q ss_pred             eEEEEeecCCCceEEEEEEecCCceEEEeeecCCCccCCC
Q 048027          226 LISCECSNLMCDWKVSAAKVRKGNVFVLKEIIPNHTCKRH  265 (735)
Q Consensus       226 r~~~~C~~~gCpwrv~as~~~~~~~~~V~~~~~~HnC~~~  265 (735)
                      |.-++|+..||+++=.+.+..++....+++|.++|||+.+
T Consensus        31 RsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~P   70 (71)
T d1wj2a_          31 RSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   70 (71)
T ss_dssp             EEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             eEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCC
Confidence            5668899999999999998877778888899999999763

>d1c6va_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Simian immunodeficiency virus [TaxId: 11723]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Retroviral integrase, catalytic domain
domain: Retroviral integrase, catalytic domain
species: Simian immunodeficiency virus [TaxId: 11723]

Probab=81.82  E-value=1.6  Score=38.25  Aligned_cols=63  Identities=14%  Similarity=0.032  Sum_probs=39.7

Q ss_pred             cEEEEcCeEeecCCCCceEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHhhccCcCCCCCcEEEEecCchhH
Q 048027          385 RLVIVDGWEIDSPYKSVMLVAVCRDGNNAVLPIAFCEVQEENLDSWSFFLKNLYEGLRMDYMDYGKGICIMCDGDNGV  462 (735)
Q Consensus       385 ~vi~iD~T~~~~~y~~~ll~avg~d~~~~~~plafalv~~Et~esw~WfL~~l~~~~~~~~~~~~~p~~iisD~~~~l  462 (735)
                      -++.+|-||+.++|     +++.+|.. .-++.|+. +.+++.+.-.-||..+...+        .|..|.||+....
T Consensus         5 g~W~~D~t~~~~k~-----il~~vD~~-Sr~~~~~~-~~~~~a~~v~~~l~~~~~~~--------~~~~I~sDnG~~F   67 (159)
T d1c6va_           5 GTWQMDCTHLEGKI-----VIVAVHVA-SGFIEAEV-IPQETGRQTALFLLKLAGRW--------PITHLHTDNGANF   67 (159)
T ss_dssp             TEEEEEEEEETTEE-----EEEEECTT-SCCEEEEE-CSSCSHHHHHHHHHHHHTTS--------CCCEEECCCCSST
T ss_pred             CceeeEEEEECCEE-----EEEEEECC-CCeEEEEE-eeccCHHHHHHHHHHHhhcc--------CCceeEecCCCcc
Confidence            36889999987653     34455654 45567764 45667776666665544332        2346889988764