Citrus Sinensis ID: 048040

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
REDEKRDCCKWRGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGWEIH
Secondary Structure (PSIPRED)
cccccccccccccEEEccccccEEEEEcccccHHHHccccccEEEcccccccccccEEEccccccccccccccccccccccEEEccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccccccccccHHHHcccccccEEEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEEcccccEEEEEEcccccEEccccccccccccHHHHccccccEEEccccccccccccHHHcccccccEEEccccccccccHHHccccccEEEEcccccccccccHHHHHHcccccEEEcccccccccccccccHcccccccEEEcccccccccccHHccccEcc
Coil and Loop (DISEMBL)
redekrdcckwrgvhcrnttghvkvlnLRTSDYEFARRKFLkgtispallklhdlrhldlsnndfggspipefIGSLSKLRYLnlscgaplevprtlrnfsgleylnlenshlfsVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLrscalppinpsficgweih
Flexible Loop (DISEMBL)
redekrdcckwrgvhcrnttghvkvlnlRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTfvlrscalppinpsficgweih
Low Complexity Region (SEG)
REDEKRDCCKWRGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPAllklhdlrhldlSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGslewlshlsslrhldlsYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGWEIH
Disordered region (IsUnstruct)
******DCCKWRGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGWE**
Disordered Region (DISOPRED)
*EDEKRDCCKWRGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGWEI*
Disordered Region (DISEMBL)
********CKWRGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGWEIH
Disordered Region (DISPRO)
*****RDCCKWRGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGWEIH
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
REDEKRDCCKWRGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGWEIH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	178	2.2.26 [Sep-21-2011]
C0LGW6	966	LRR receptor-like serine/	no	no	0.685	0.126	0.362	1e-10
Q6XAT2	967	LRR receptor-like serine/	no	no	0.685	0.126	0.355	1e-10
C0LGT6	1031	LRR receptor-like serine/	no	no	0.674	0.116	0.406	2e-09
Q42371	976	LRR receptor-like serine/	no	no	0.657	0.119	0.384	3e-09
Q00874	372	DNA-damage-repair/tolerat	no	no	0.831	0.397	0.316	3e-08
Q9LFS4	638	Protein NSP-INTERACTING K	no	no	0.685	0.191	0.365	5e-08
Q9FL28	1173	LRR receptor-like serine/	no	no	0.657	0.099	0.355	7e-08
Q9C9H7	847	Receptor-like protein 12	no	no	0.685	0.144	0.345	1e-07
C0LGH8	664	Probable LRR receptor-lik	no	no	0.617	0.165	0.320	3e-07
Q9FN93	887	Probable LRR receptor-lik	no	no	0.556	0.111	0.370	3e-07

>sp|C0LGW6|ERL1_ARATH LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 73/135 (54%), Gaps = 13/135 (9%)

Query: 7   DCCKWRGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFG 66
           D C WRGV C N +  V  LNL + +        L G ISPA+  L +L+ +DL  N   
Sbjct: 57  DLCSWRGVFCDNVSYSVVSLNLSSLN--------LGGEISPAIGDLRNLQSIDLQGNKLA 108

Query: 67  GSPIPEFIGSLSKLRYLNLSCGAPL-EVPRTLRNFSGLEYLNLENSHLFSVGSL-EWLSH 124
           G  IP+ IG+ + L YL+LS      ++P ++     LE LNL+N+ L   G +   L+ 
Sbjct: 109 GQ-IPDEIGNCASLVYLDLSENLLYGDIPFSISKLKQLETLNLKNNQL--TGPVPATLTQ 165

Query: 125 LSSLRHLDLSYINLT 139
           + +L+ LDL+  +LT
Sbjct: 166 IPNLKRLDLAGNHLT 180

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ER and ERL2.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q6XAT2|ERL2_ARATH LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 71/135 (52%), Gaps = 13/135 (9%)

Query: 7   DCCKWRGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFG 66
           D C WRGV C N + +V  LNL   +        L G IS AL  L +L+ +DL  N  G
Sbjct: 59  DFCSWRGVFCDNVSLNVVSLNLSNLN--------LGGEISSALGDLMNLQSIDLQGNKLG 110

Query: 67  GSPIPEFIGSLSKLRYLNLSCGAPL-EVPRTLRNFSGLEYLNLENSHLFSVGSL-EWLSH 124
           G  IP+ IG+   L Y++ S      ++P ++     LE+LNL+N+ L   G +   L+ 
Sbjct: 111 GQ-IPDEIGNCVSLAYVDFSTNLLFGDIPFSISKLKQLEFLNLKNNQL--TGPIPATLTQ 167

Query: 125 LSSLRHLDLSYINLT 139
           + +L+ LDL+   LT
Sbjct: 168 IPNLKTLDLARNQLT 182

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ERL1 and ER.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/133 (40%), Positives = 70/133 (52%), Gaps = 13/133 (9%)

Query: 9   CKWRGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGS 68
           C W GV C      V  LNL            L G ISP++  L  LR L+L++N F GS
Sbjct: 61  CNWIGVTCGRRRERVISLNLGGFK--------LTGVISPSIGNLSFLRLLNLADNSF-GS 111

Query: 69  PIPEFIGSLSKLRYLNLSCGAPLE--VPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLS 126
            IP+ +G L +L+YLN+S    LE  +P +L N S L  ++L ++HL   G    L  LS
Sbjct: 112 TIPQKVGRLFRLQYLNMSYNL-LEGRIPSSLSNCSRLSTVDLSSNHL-GHGVPSELGSLS 169

Query: 127 SLRHLDLSYINLT 139
            L  LDLS  NLT
Sbjct: 170 KLAILDLSKNNLT 182

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1

 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/130 (38%), Positives = 68/130 (52%), Gaps = 13/130 (10%)

Query: 7   DCCKWRGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFG 66
           D C WRGV C N T +V  LNL  SD        L G ISPA+  L  L  +DL  N   
Sbjct: 54  DYCVWRGVSCENVTFNVVALNL--SDLN------LDGEISPAIGDLKSLLSIDLRGNRLS 105

Query: 67  GSPIPEFIGSLSKLRYLNLSCGA-PLEVPRTLRNFSGLEYLNLENSHLFSVGSL-EWLSH 124
           G  IP+ IG  S L+ L+LS      ++P ++     LE L L+N+ L  +G +   LS 
Sbjct: 106 GQ-IPDEIGDCSSLQNLDLSFNELSGDIPFSISKLKQLEQLILKNNQL--IGPIPSTLSQ 162

Query: 125 LSSLRHLDLS 134
           + +L+ LDL+
Sbjct: 163 IPNLKILDLA 172

Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q00874|DR100_ARATH DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2

 Score = 58.2 bits (139), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 78/161 (48%), Gaps = 13/161 (8%)

Query: 4   EKRDCCK-WRGVHCRNTTGHVKVLNLR--TSDYEF---ARRKFLKGTISPALLKLHDLRH 57
           E  DCCK W G+ C   +G V  ++LR  + D  F    R  ++ G+I PA+  L  L  
Sbjct: 55  ENTDCCKEWYGISCDPDSGRVTDISLRGESEDAIFQKAGRSGYMSGSIDPAVCDLTALTS 114

Query: 58  LDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPL-EVPRTLRNFSGLEYLNLENSHLFSV 116
           L L++       IP  I SL+ LR L+L+      E+P  +   S L  LNL  + +   
Sbjct: 115 LVLADWKGITGEIPPCITSLASLRILDLAGNKITGEIPAEIGKLSKLAVLNLAENQM--- 171

Query: 117 GSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTF 157
            S E  + L+SL  ++L ++ LT++     + A   SLK  
Sbjct: 172 -SGEIPASLTSL--IELKHLELTENGITGVIPADFGSLKML 209

This protein is able to complement bacterial recA mutations, but its native function in the plant is not known.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFS4|NIK1_ARATH Protein NSP-INTERACTING KINASE 1 OS=Arabidopsis thaliana GN=NIK1 PE=1 SV=1

 Score = 57.4 bits (137), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 69/134 (51%), Gaps = 12/134 (8%)

Query: 7   DCCKWRGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFG 66
           D C W  V C +      V+ L T          L GT+SP++  L +LR + L NN+  
Sbjct: 68  DPCSWTMVTCSSEN---FVIGLGTPSQN------LSGTLSPSITNLTNLRIVLLQNNNIK 118

Query: 67  GSPIPEFIGSLSKLRYLNLSCG-APLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHL 125
           G  IP  IG L++L  L+LS      E+P ++     L+YL L N+ L  V  L  LS++
Sbjct: 119 GK-IPAEIGRLTRLETLDLSDNFFHGEIPFSVGYLQSLQYLRLNNNSLSGVFPLS-LSNM 176

Query: 126 SSLRHLDLSYINLT 139
           + L  LDLSY NL+
Sbjct: 177 TQLAFLDLSYNNLS 190

Involved in defense response to geminivirus infection via regulation of the nuclear trafficking of RPL10A. Phosphorylates RPL10A in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score = 57.0 bits (136), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 69/135 (51%), Gaps = 18/135 (13%)

Query: 9   CKWRGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGS 68
           C W G+ C ++TGHV  ++L          K L+G +SPA+  L  L+ LDL++N F G 
Sbjct: 61  CNWTGITC-DSTGHVVSVSLL--------EKQLEGVLSPAIANLTYLQVLDLTSNSFTGK 111

Query: 69  PIPEFIGSLSKLR----YLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSH 124
            IP  IG L++L     YLN   G+   +P  +     + YL+L N +L S    E +  
Sbjct: 112 -IPAEIGKLTELNQLILYLNYFSGS---IPSGIWELKNIFYLDLRN-NLLSGDVPEEICK 166

Query: 125 LSSLRHLDLSYINLT 139
            SSL  +   Y NLT
Sbjct: 167 TSSLVLIGFDYNNLT 181

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 72/133 (54%), Gaps = 11/133 (8%)

Query: 3   DEKRDCCKWRGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSN 62
           ++  DCC W GV C + +G V  L++  +        +LK   + +L KL  LRHLDL+N
Sbjct: 66  NKSTDCCLWNGVTCNDKSGQVISLDIPNT----FLNNYLK--TNSSLFKLQYLRHLDLTN 119

Query: 63  NDFGGSPIPEFIGSLSKLRYLNLSCGAPL-EVPRTLRNFSGLEYLNLENSHLFSVGSL-E 120
            +  G  IP  +G+LS L  +NL     + E+P ++ N + L +L L N+ L   G +  
Sbjct: 120 CNLYGE-IPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVL--TGEIPS 176

Query: 121 WLSHLSSLRHLDL 133
            L +LS L +L+L
Sbjct: 177 SLGNLSRLVNLEL 189

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|C0LGH8|Y1634_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g63430 OS=Arabidopsis thaliana GN=At1g63430 PE=1 SV=1

 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 60/128 (46%), Gaps = 18/128 (14%)

Query: 3   DEKRDCCKWRGVHCRNTTGHVKVLNLRTSDY------EFARRKFLK----------GTIS 46
           D   D C W G++C  +  HV  +N+  S        E  +  +L+          GTI 
Sbjct: 51  DPNSDPCDWTGIYCSPSKDHVIKINISASSIKGFLAPELGQITYLQELILHGNILIGTIP 110

Query: 47  PALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNL-SCGAPLEVPRTLRNFSGLEY 105
             +  L +L+ LDL NN   G PIP  IGSLS +  +NL S G   ++P  L N   L  
Sbjct: 111 KEIGNLKNLKILDLGNNHLMG-PIPAEIGSLSGIMIINLQSNGLTGKLPAELGNLKYLRE 169

Query: 106 LNLENSHL 113
           L+++ + L
Sbjct: 170 LHIDRNRL 177

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FN93|Y5596_ARATH Probable LRR receptor-like serine/threonine-protein kinase At5g59680 OS=Arabidopsis thaliana GN=At5g59680 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/116 (37%), Positives = 59/116 (50%), Gaps = 17/116 (14%)

Query: 11  WRGVHCR----NTTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFG 66
           W G++C      T   +  LNL +S         L GTI+ A+  L  L  LDLSNN+  
Sbjct: 396 WDGLNCSITDITTPPRITTLNLSSSG--------LTGTITAAIQNLTTLEKLDLSNNNLT 447

Query: 67  GSPIPEFIGSLSKLRYLNLSCGAPLE--VPRTLRNFSGLEYLNLENSHLFSVGSLE 120
           G  +PEF+ ++  L  +NLS G  L   +P++L+   GLE L   N  L S GS E
Sbjct: 448 GE-VPEFLSNMKSLLVINLS-GNDLNGTIPQSLQR-KGLELLYQGNPRLISPGSTE 500

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	178
359490572	975	PREDICTED: probable LRR receptor-like se	0.938	0.171	0.505	1e-36
225464712	1021	PREDICTED: receptor-like protein 12-like	0.932	0.162	0.505	7e-34
224105895	963	predicted protein [Populus trichocarpa]	0.943	0.174	0.529	4e-33
297720183	296	Os01g0601700 [Oryza sativa Japonica Grou	0.893	0.537	0.487	1e-32
209970603	1038	AM19-5p [Malus floribunda]	0.938	0.160	0.435	7e-32
296090228	896	unnamed protein product [Vitis vinifera]	0.915	0.181	0.508	1e-31
359488591	981	PREDICTED: probable leucine-rich repeat	0.915	0.166	0.508	1e-31
225464642	985	PREDICTED: receptor-like protein 12-like	0.915	0.165	0.475	7e-31
359488633	981	PREDICTED: LRR receptor-like serine/thre	0.915	0.166	0.497	1e-30
147822632	969	hypothetical protein VITISV_026260 [Viti	0.915	0.168	0.497	1e-30

>gi|359490572|ref|XP_003634116.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera]

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 88/174 (50%), Positives = 113/174 (64%), Gaps = 7/174 (4%)

Query: 2   EDEKRDCCKWRGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLS 61
           E  KRDCCKWRGV C + TGH+  L+L   +Y+   R  L+G ISP+LL+L  L HLDLS
Sbjct: 64  EKNKRDCCKWRGVQCSSQTGHITSLDLSAYEYKDEFRH-LRGKISPSLLELQQLNHLDLS 122

Query: 62  NNDFGGSPIPEFIGSLSKLRYLNLSC---GAPLEVPRTLRNFSGLEYLNLENSHLFSVGS 118
            NDF G  +PEFIGSL+K+RYL+LS      PL  P  L N S L +L+L  +   S  +
Sbjct: 123 GNDFEGRSMPEFIGSLTKMRYLDLSSTYLAGPL--PHQLGNLSNLNFLDLSGNSNMSSEN 180

Query: 119 LEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALP-PINPSF 171
           L+WLS LSSL HL L+++NL+K+  W   + KL SL   +L+SC LP PI PS 
Sbjct: 181 LDWLSRLSSLTHLGLNHLNLSKAIRWADAINKLPSLIDLLLKSCDLPSPITPSL 234

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464712|ref|XP_002276171.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  148 bits (374), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 85/168 (50%), Positives = 108/168 (64%), Gaps = 2/168 (1%)

Query: 2   EDEKRDCCKWRGVHCRNTTGHVKVLNLRTSDYEFARR-KFLKGTISPALLKLHDLRHLDL 60
           E+++RDCCKWRGV C N T HV +L+L     +   + + L+G IS +LL+L  L HLDL
Sbjct: 80  EEDRRDCCKWRGVQCSNRTSHVIMLDLHALPTDTVHKYQSLRGRISSSLLELQHLNHLDL 139

Query: 61  SNNDFGGSPIPEFIGSLSKLRYLNLS-CGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSL 119
           S NDF GS +PEFIG  SKLRYLNLS       +P  L N S L +L+L  ++  S  +L
Sbjct: 140 SLNDFQGSYVPEFIGLFSKLRYLNLSEARLAGMIPSHLGNLSNLHFLDLSRNYGMSSETL 199

Query: 120 EWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPI 167
           EWLS LSSLRHLDLS +NL K+  W  V+ +L SL   +L   ALP I
Sbjct: 200 EWLSRLSSLRHLDLSGLNLDKAIYWEHVINRLPSLTDLLLHDSALPQI 247

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105895|ref|XP_002333753.1| predicted protein [Populus trichocarpa] gi|222838401|gb|EEE76766.1| predicted protein [Populus trichocarpa]

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 90/170 (52%), Positives = 106/170 (62%), Gaps = 2/170 (1%)

Query: 2   EDEKRDCCKWRGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLS 61
           E+EKRDCCKWRGV C N TGHV  LNL +S         L G +S +LL+L  L +LDLS
Sbjct: 60  EEEKRDCCKWRGVGCDNITGHVTSLNLHSSPLYEHHFTPLTGKVSNSLLELQHLNYLDLS 119

Query: 62  NNDFGGSPIPEFIGSLSKLRYLNLSCGA-PLEVPRTLRNFSGLEYLNLENSHLFSVGSLE 120
            N+   S I +FIGSLS LRYLNLS     + +P  LRN S L+ L+L  S   SV +L 
Sbjct: 120 LNNLDES-IMDFIGSLSSLRYLNLSYNLFTVTIPYHLRNLSRLQSLDLSYSFDASVENLG 178

Query: 121 WLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPS 170
           WLSHLSSL HLDLS  +L+K  DW QVV  L  LK   L  C+L  I PS
Sbjct: 179 WLSHLSSLEHLDLSGSDLSKVNDWLQVVTNLPRLKDLRLNQCSLTDIIPS 228

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297720183|ref|NP_001172453.1| Os01g0601700 [Oryza sativa Japonica Group] gi|255673434|dbj|BAH91183.1| Os01g0601700 [Oryza sativa Japonica Group]

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 79/162 (48%), Positives = 102/162 (62%), Gaps = 3/162 (1%)

Query: 6   RDCCKWRGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGT--ISPALLKLHDLRHLDLSNN 63
            DCC+W+GV C NTTGHV  L+LR +D +      +  T  +SP+++ LH LR+LDLS N
Sbjct: 76  EDCCRWKGVRCDNTTGHVVRLDLRNTDEDDWSNGLILSTSEMSPSIVDLHHLRYLDLSYN 135

Query: 64  DFGGSPIPEFIGSLSKLRYLNLSCGAPL-EVPRTLRNFSGLEYLNLENSHLFSVGSLEWL 122
            F  + IP+F+GSLS LRYLNLS       +P  L N S L+YL+L NSH  SV  L WL
Sbjct: 136 HFNFTSIPDFLGSLSNLRYLNLSAANFWGTLPSQLGNLSNLQYLDLGNSHSLSVSDLSWL 195

Query: 123 SHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCAL 164
             L  L +LDLS ++L+  R+W   V KL SL+  VL SC L
Sbjct: 196 MGLPFLSYLDLSTVDLSSERNWVHAVNKLPSLQVLVLSSCGL 237

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970603|gb|ACJ03064.1| AM19-5p [Malus floribunda]

 Score =  142 bits (357), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 74/170 (43%), Positives = 103/170 (60%), Gaps = 3/170 (1%)

Query: 3   DEKRDCCKWRGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSN 62
           +E  DCC W GV C + TGH+  L+L +S++++    F  G I+P+LL L  L +LDLSN
Sbjct: 66  EEDSDCCSWTGVVCDHITGHIHELHLNSSNFDWYINSFFGGKINPSLLSLKHLNYLDLSN 125

Query: 63  NDFGGSPIPEFIGSLSKLRYLNLSCGA-PLEVPRTLRNFSGLEYLNLENSH--LFSVGSL 119
           NDF  + IP F GS++ L +LNL        +P  L N S L YLNL + +     V +L
Sbjct: 126 NDFSSTQIPSFFGSMTSLTHLNLGTSEFDGIIPHNLGNLSSLRYLNLSSLYGPRLKVENL 185

Query: 120 EWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINP 169
           +W++ LS L+HLDLSY+NL+K+ DW QV   L SL   ++  C L  I P
Sbjct: 186 QWIAGLSLLKHLDLSYVNLSKASDWLQVTNMLPSLVELIMLDCQLDQIAP 235

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090228|emb|CBI40047.3| unnamed protein product [Vitis vinifera]

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 87/171 (50%), Positives = 106/171 (61%), Gaps = 8/171 (4%)

Query: 6   RDCCKWRGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDF 65
            DCCKWRGV C N +GHV  L LR  D +    + L G ISPALL L  L +LDLS N+F
Sbjct: 110 EDCCKWRGVVCNNRSGHVIKLTLRYLDSDGTEGE-LGGKISPALLDLKYLNYLDLSMNNF 168

Query: 66  GGSPIPEFIGSLSKLRYLNLSC---GAPLEVPRTLRNFSGLEYLNL-ENSHLFSVGSLEW 121
           GG PIPEFIGSL KLRYLNLS    G P  +P  L N S L YL+L E     S   L W
Sbjct: 169 GGIPIPEFIGSLEKLRYLNLSGASFGGP--IPPQLGNLSSLHYLDLKEYFDESSQDDLHW 226

Query: 122 LSHLSSLRHLDLSYINLTKSRD-WFQVVAKLRSLKTFVLRSCALPPINPSF 171
           +S L+SLRHL+L  ++L+++   W Q V+K+ SL    L +CAL  + PS 
Sbjct: 227 ISGLTSLRHLNLGGVDLSQAAAYWLQAVSKISSLLELHLPACALADLPPSL 277

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488591|ref|XP_003633783.1| PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Vitis vinifera]

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 87/171 (50%), Positives = 106/171 (61%), Gaps = 8/171 (4%)

Query: 6   RDCCKWRGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDF 65
            DCCKWRGV C N +GHV  L LR  D +    + L G ISPALL L  L +LDLS N+F
Sbjct: 67  EDCCKWRGVVCNNRSGHVIKLTLRYLDSDGTEGE-LGGKISPALLDLKYLNYLDLSMNNF 125

Query: 66  GGSPIPEFIGSLSKLRYLNLSC---GAPLEVPRTLRNFSGLEYLNL-ENSHLFSVGSLEW 121
           GG PIPEFIGSL KLRYLNLS    G P  +P  L N S L YL+L E     S   L W
Sbjct: 126 GGIPIPEFIGSLEKLRYLNLSGASFGGP--IPPQLGNLSSLHYLDLKEYFDESSQDDLHW 183

Query: 122 LSHLSSLRHLDLSYINLTKSRD-WFQVVAKLRSLKTFVLRSCALPPINPSF 171
           +S L+SLRHL+L  ++L+++   W Q V+K+ SL    L +CAL  + PS 
Sbjct: 184 ISGLTSLRHLNLGGVDLSQAAAYWLQAVSKISSLLELHLPACALADLPPSL 234

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464642|ref|XP_002274689.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  138 bits (348), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 79/166 (47%), Positives = 101/166 (60%), Gaps = 3/166 (1%)

Query: 5   KRDCCKWRGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNND 64
             +CC W GV C NTTGHV  LNLR   Y+      L G IS +LL L  L++LDLS ND
Sbjct: 62  NEECCNWEGVCCHNTTGHVLKLNLRWDLYQ--DHGSLGGEISSSLLDLKHLQYLDLSCND 119

Query: 65  FGGSPIPEFIGSLSKLRYLNLS-CGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLS 123
           FG   IP+F+GSLS LRYLNLS  G    +P  L N S L YL++ NS   +V  LEW+S
Sbjct: 120 FGSLHIPKFLGSLSNLRYLNLSSAGFGGVIPHQLGNLSKLHYLDIGNSDSLNVEDLEWIS 179

Query: 124 HLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINP 169
            L+ L+ LD++ +NL+K+ +W QV+ K  SL    L  C L   +P
Sbjct: 180 GLTFLKFLDMANVNLSKASNWLQVMNKFHSLSVLRLSYCELDTFDP 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488633|ref|XP_002264905.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/171 (49%), Positives = 107/171 (62%), Gaps = 8/171 (4%)

Query: 6   RDCCKWRGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDF 65
            DCCKWRGV C N + HV  L LR  D +    + L G ISPALL+L  L +LDLS N+F
Sbjct: 67  EDCCKWRGVVCNNRSRHVIKLTLRYLDADGTEGE-LGGKISPALLELKYLNYLDLSMNNF 125

Query: 66  GGSPIPEFIGSLSKLRYLNLSC---GAPLEVPRTLRNFSGLEYLNL-ENSHLFSVGSLEW 121
           GG+PIP+FIGSL KLRYLNLS    G P  +P  L N S L YL+L E     +   L W
Sbjct: 126 GGTPIPKFIGSLEKLRYLNLSGASFGGP--IPPQLGNLSSLHYLDLKEYFDESNQNDLHW 183

Query: 122 LSHLSSLRHLDLSYINLTKSRD-WFQVVAKLRSLKTFVLRSCALPPINPSF 171
           +S L+SLRHL+L  ++L+++   W Q V+KL SL    L +CAL  + PS 
Sbjct: 184 ISGLTSLRHLNLGGVDLSQAAAYWLQAVSKLPSLSELHLPACALADLPPSL 234

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147822632|emb|CAN75075.1| hypothetical protein VITISV_026260 [Vitis vinifera]

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/171 (49%), Positives = 107/171 (62%), Gaps = 8/171 (4%)

Query: 6   RDCCKWRGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDF 65
            DCCKWRGV C N + HV  L LR  D +    + L G ISPALL+L  L +LDLS N+F
Sbjct: 67  EDCCKWRGVVCNNRSRHVIKLTLRYLDADGTEGE-LGGKISPALLELKYLNYLDLSMNNF 125

Query: 66  GGSPIPEFIGSLSKLRYLNLSC---GAPLEVPRTLRNFSGLEYLNL-ENSHLFSVGSLEW 121
           GG+PIP+FIGSL KLRYLNLS    G P  +P  L N S L YL+L E     +   L W
Sbjct: 126 GGTPIPKFIGSLEKLRYLNLSGASFGGP--IPPQLGNLSSLHYLDLKEYFDESNQNDLHW 183

Query: 122 LSHLSSLRHLDLSYINLTKSRD-WFQVVAKLRSLKTFVLRSCALPPINPSF 171
           +S L+SLRHL+L  ++L+++   W Q V+KL SL    L +CAL  + PS 
Sbjct: 184 ISGLTSLRHLNLGGVDLSQAAAYWLQAVSKLPSLSELHLPACALADLPPSL 234

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	178
TAIR|locus:2044767	905	AT2G34930 "AT2G34930" [Arabido	0.921	0.181	0.303	5.9e-13
TAIR|locus:2036636	632	NIK3 "NSP-interacting kinase 3	0.539	0.151	0.370	1e-07
TAIR|locus:2075631	1009	AT3G47090 [Arabidopsis thalian	0.539	0.095	0.330	7.4e-07
TAIR|locus:2167948	966	ERL1 "ERECTA-like 1" [Arabidop	0.550	0.101	0.342	2.1e-06
TAIR|locus:2005507	976	ER "ERECTA" [Arabidopsis thali	0.550	0.100	0.361	2.1e-06
TAIR|locus:2182855	967	ERL2 "ERECTA-like 2" [Arabidop	0.550	0.101	0.324	3.4e-06
TAIR|locus:2149922	1031	EFR "EF-TU receptor" [Arabidop	0.533	0.092	0.345	4.7e-06
TAIR|locus:2091260	372	DRT100 "DNA-DAMAGE REPAIR/TOLE	0.584	0.279	0.338	6.6e-06
TAIR|locus:2094613	784	RLP38 "receptor like protein 3	0.567	0.128	0.342	1.2e-05
TAIR|locus:2094603	835	RLP37 "receptor like protein 3	0.533	0.113	0.349	1.3e-05

TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 5.9e-13, P = 5.9e-13
 Identities = 54/178 (30%), Positives = 77/178 (43%)

Query:     7 DCCKWRGVHCRNTTGHVKVLNLRTSDYEFA----RRKFLKGTISPAXXXXXXXXXXXXSN 62
             DCC W GV C   T HV  ++LR    +      +R  L+G I P+            S+
Sbjct:    62 DCCNWPGVLCDARTSHVVKIDLRNPSQDVRSDEYKRGSLRGKIHPSLTQLKFLSYLDLSS 121

Query:    63 NDFGGSPIPEFIGSLSKLRYLNLSCGA-PLEVPRTLRNFSGLEYLNLENSHLFSVGXXXX 121
             NDF    IPEFIG +  LRYLNLS  +   E+P +L N S LE L+L        G    
Sbjct:   122 NDFNELEIPEFIGQIVSLRYLNLSSSSFSGEIPTSLGNLSKLESLDLYAESFGDSGTLSL 181

Query:   122 XXXXXXXXXXXXX--------YINLTKSRD-WFQVVAKLRSLKTFVLRSCALPPINPS 170
                                  Y+NL+ + + W Q  +++ +LK   L +  L  + P+
Sbjct:   182 RASNLRWLSSLSSSLKYLNMGYVNLSGAGETWLQDFSRISALKELHLFNSELKNLPPT 239

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP;IMP

TAIR|locus:2036636 NIK3 "NSP-interacting kinase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 40/108 (37%), Positives = 50/108 (46%)

Query:     7 DCCKWRGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPAXXXXXXXXXXXXSNNDFG 66
             D C WR V C  T G+V  L+L +          L GT+SP              NN   
Sbjct:    62 DPCSWRMVSC--TDGYVSSLDLPSQS--------LSGTLSPRIGNLTYLQSVVLQNNAIT 111

Query:    67 GSPIPEFIGSLSKLRYLNLSCGAPL-EVPRTLRNFSGLEYLNLENSHL 113
             G PIPE IG L KL+ L+LS  +   E+P +L     L YL L N+ L
Sbjct:   112 G-PIPETIGRLEKLQSLDLSNNSFTGEIPASLGELKNLNYLRLNNNSL 158

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
 Identities = 35/106 (33%), Positives = 52/106 (49%)

Query:     9 CKWRGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPAXXXXXXXXXXXXSNNDFGGS 68
             C W+ V C     H +V  L     +      L G ISP+            SNN FGG+
Sbjct:    54 CSWKWVRCGRK--HKRVTRLDLGGLQ------LGGVISPSIGNLSFLIYLDLSNNSFGGT 105

Query:    69 PIPEFIGSLSKLRYLNLSCG-APLEVPRTLRNFSGLEYLNLENSHL 113
              IP+ +G+L +L+YL +       E+P +L N S L YL+L +++L
Sbjct:   106 -IPQEMGNLFRLKYLAVGFNYLEGEIPASLSNCSRLLYLDLFSNNL 150

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2167948 ERL1 "ERECTA-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 37/108 (34%), Positives = 50/108 (46%)

Query:     7 DCCKWRGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPAXXXXXXXXXXXXSNNDFG 66
             D C WRGV C N +  V  LNL + +        L G ISPA              N   
Sbjct:    57 DLCSWRGVFCDNVSYSVVSLNLSSLN--------LGGEISPAIGDLRNLQSIDLQGNKLA 108

Query:    67 GSPIPEFIGSLSKLRYLNLSCGAPL-EVPRTLRNFSGLEYLNLENSHL 113
             G  IP+ IG+ + L YL+LS      ++P ++     LE LNL+N+ L
Sbjct:   109 GQ-IPDEIGNCASLVYLDLSENLLYGDIPFSISKLKQLETLNLKNNQL 155

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010103 "stomatal complex morphogenesis" evidence=IGI;RCA

GO:0009553 "embryo sac development" evidence=IGI

GO:0048481 "ovule development" evidence=IGI;RCA

GO:0016020 "membrane" evidence=IDA

GO:0001708 "cell fate specification" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

TAIR|locus:2005507 ER "ERECTA" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 39/108 (36%), Positives = 49/108 (45%)

Query:     7 DCCKWRGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPAXXXXXXXXXXXXSNNDFG 66
             D C WRGV C N T +V  LNL  SD        L G ISPA              N   
Sbjct:    54 DYCVWRGVSCENVTFNVVALNL--SDLN------LDGEISPAIGDLKSLLSIDLRGNRLS 105

Query:    67 GSPIPEFIGSLSKLRYLNLSCGAPL-EVPRTLRNFSGLEYLNLENSHL 113
             G  IP+ IG  S L+ L+LS      ++P ++     LE L L+N+ L
Sbjct:   106 GQ-IPDEIGDCSSLQNLDLSFNELSGDIPFSISKLKQLEQLILKNNQL 152

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0048281 "inflorescence morphogenesis" evidence=IMP

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IMP

GO:0010103 "stomatal complex morphogenesis" evidence=RCA;IMP

GO:0001558 "regulation of cell growth" evidence=IGI;IMP

GO:0009965 "leaf morphogenesis" evidence=RCA;IMP

GO:0010148 "transpiration" evidence=IMP

GO:0030155 "regulation of cell adhesion" evidence=IMP

GO:0051302 "regulation of cell division" evidence=IGI;IMP

GO:0009664 "plant-type cell wall organization" evidence=IMP

GO:0008356 "asymmetric cell division" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0031540 "regulation of anthocyanin biosynthetic process" evidence=RCA

GO:0019199 "transmembrane receptor protein kinase activity" evidence=ISS

GO:2000027 "regulation of organ morphogenesis" evidence=IMP

TAIR|locus:2182855 ERL2 "ERECTA-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 35/108 (32%), Positives = 49/108 (45%)

Query:     7 DCCKWRGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPAXXXXXXXXXXXXSNNDFG 66
             D C WRGV C N + +V  LNL   +        L G IS A              N  G
Sbjct:    59 DFCSWRGVFCDNVSLNVVSLNLSNLN--------LGGEISSALGDLMNLQSIDLQGNKLG 110

Query:    67 GSPIPEFIGSLSKLRYLNLSCGAPL-EVPRTLRNFSGLEYLNLENSHL 113
             G  IP+ IG+   L Y++ S      ++P ++     LE+LNL+N+ L
Sbjct:   111 GQ-IPDEIGNCVSLAYVDFSTNLLFGDIPFSISKLKQLEFLNLKNNQL 157

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010103 "stomatal complex morphogenesis" evidence=IGI;RCA

GO:0009553 "embryo sac development" evidence=IGI

GO:0048481 "ovule development" evidence=IGI;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 4.7e-06, P = 4.7e-06
 Identities = 37/107 (34%), Positives = 53/107 (49%)

Query:     9 CKWRGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPAXXXXXXXXXXXXSNNDFGGS 68
             C W GV C      V  LNL    ++      L G ISP+            ++N FG S
Sbjct:    61 CNWIGVTCGRRRERVISLNL--GGFK------LTGVISPSIGNLSFLRLLNLADNSFG-S 111

Query:    69 PIPEFIGSLSKLRYLNLSCGAPLE--VPRTLRNFSGLEYLNLENSHL 113
              IP+ +G L +L+YLN+S    LE  +P +L N S L  ++L ++HL
Sbjct:   112 TIPQKVGRLFRLQYLNMSYNL-LEGRIPSSLSNCSRLSTVDLSSNHL 157

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0002764 "immune response-regulating signaling pathway" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0019199 "transmembrane receptor protein kinase activity" evidence=TAS

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2091260 DRT100 "DNA-DAMAGE REPAIR/TOLERATION 100" [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 6.6e-06, P = 6.6e-06
 Identities = 40/118 (33%), Positives = 56/118 (47%)

Query:     4 EKRDCCK-WRGVHCRNTTGHVKVLNLR--TSDYEF---ARRKFLKGTISPAXXXXXXXXX 57
             E  DCCK W G+ C   +G V  ++LR  + D  F    R  ++ G+I PA         
Sbjct:    55 ENTDCCKEWYGISCDPDSGRVTDISLRGESEDAIFQKAGRSGYMSGSIDPAVCDLTALTS 114

Query:    58 XXXSNNDFGG--SPIPEFIGSLSKLRYLNLSCGAPL--EVPRTLRNFSGLEYLNL-EN 110
                +  D+ G    IP  I SL+ LR L+L+ G  +  E+P  +   S L  LNL EN
Sbjct:   115 LVLA--DWKGITGEIPPCITSLASLRILDLA-GNKITGEIPAEIGKLSKLAVLNLAEN 169

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

GO:0009650 "UV protection" evidence=IGI

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009411 "response to UV" evidence=IGI

GO:0009507 "chloroplast" evidence=ISS

GO:0042493 "response to drug" evidence=IGI

TAIR|locus:2094613 RLP38 "receptor like protein 38" [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 37/108 (34%), Positives = 52/108 (48%)

Query:     7 DCCKWRGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPAXXXXXXXXXXXXSNNDFG 66
             DCC W GV C    G  +V++L+      A    LK   S A            SN +  
Sbjct:    69 DCCSWGGVTCDAILG--EVISLKLYFLSTASTS-LKS--SSALFKLQHLTHLDLSNCNLQ 123

Query:    67 GSPIPEFIGSLSKLRYLNLSCGAPL-EVPRTLRNFSGLEYLNLENSHL 113
             G  IP  I +LS L +L+LS    + EVP ++ N + LEY++L  +HL
Sbjct:   124 GE-IPSSIENLSHLTHLDLSTNHLVGEVPASIGNLNQLEYIDLRGNHL 170

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2094603 RLP37 "receptor like protein 37" [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 36/103 (34%), Positives = 48/103 (46%)

Query:     7 DCCKWRGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPAXXXXXXXXXXXXSNNDFG 66
             DCC W GV C  T G V  LNL      +     LK   S +            S+ +  
Sbjct:    72 DCCSWEGVTCDATLGEVISLNL----VSYIANTSLKS--SSSLFKLRHLRHLELSHCNLQ 125

Query:    67 GSPIPEFIGSLSKLRYLNLSCGAPL-EVPRTLRNFSGLEYLNL 108
             G  IP  IG+LS L YL+LS    + E P ++ N + LEY++L
Sbjct:   126 GE-IPSSIGNLSHLTYLDLSFNQLVGEFPVSIGNLNQLEYIDL 167

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00006444001 SubName- Full=Chromosome undetermined scaffold_171, whole genome shotgun sequence; (897 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	178
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-10
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	9e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 58.7 bits (142), Expect = 1e-10
 Identities = 55/203 (27%), Positives = 81/203 (39%), Gaps = 79/203 (38%)

Query: 7   DCCKWRGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPALLKL-------------- 52
           D C W+G+ C N++  V  ++L          K + G IS A+ +L              
Sbjct: 56  DVCLWQGITCNNSS-RVVSIDLSG--------KNISGKISSAIFRLPYIQTINLSNNQLS 106

Query: 53  -----------HDLRHLDLSNNDFGGS---------------------PIPEFIGSLSKL 80
                        LR+L+LSNN+F GS                      IP  IGS S L
Sbjct: 107 GPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSL 166

Query: 81  RYLNLSCGAPL-EVPRTLRNFSGLEYLNLENSHLF--------SVGSLEW---------- 121
           + L+L     + ++P +L N + LE+L L ++ L          + SL+W          
Sbjct: 167 KVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG 226

Query: 122 -----LSHLSSLRHLDLSYINLT 139
                +  L+SL HLDL Y NLT
Sbjct: 227 EIPYEIGGLTSLNHLDLVYNNLT 249

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 46.1 bits (109), Expect = 2e-06
 Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 4/95 (4%)

Query: 45  ISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLE 104
           +   L  L +L +LDLS N    S +P  I  LS L  L+LS  + +E+  +L N   L 
Sbjct: 178 LPKLLSNLSNLNNLDLSGNKI--SDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLS 235

Query: 105 YLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLT 139
            L L  S+       E + +LS+L  LDLS   ++
Sbjct: 236 GLEL--SNNKLEDLPESIGNLSNLETLDLSNNQIS 268

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.8 bits (106), Expect = 7e-06
 Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 9/64 (14%)

Query: 22  HVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLR 81
           H++ +NL  +         ++G I P+L  +  L  LDLS N F GS IPE +G L+ LR
Sbjct: 443 HLQSINLSGN--------SIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLR 493

Query: 82  YLNL 85
            LNL
Sbjct: 494 ILNL 497

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.1 bits (99), Expect = 7e-05
 Identities = 41/114 (35%), Positives = 56/114 (49%), Gaps = 3/114 (2%)

Query: 27  NLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNL- 85
           NL+   Y F  +  L G I P++  L  L  LDLS+N   G  IPE +  L  L  L+L 
Sbjct: 258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE-IPELVIQLQNLEILHLF 316

Query: 86  SCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLT 139
           S     ++P  L +   L+ L L  S+ FS    + L   ++L  LDLS  NLT
Sbjct: 317 SNNFTGKIPVALTSLPRLQVLQLW-SNKFSGEIPKNLGKHNNLTVLDLSTNNLT 369

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 1e-04
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 102 GLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSLKTFVLR 160
            L+ L+L N+ L  +        L +L+ LDLS  NLT  S + F     L SL++  L 
Sbjct: 1   NLKSLDLSNNRLTVIPD-GAFKGLPNLKVLDLSGNNLTSISPEAFS---GLPSLRSLDLS 56

Query: 161 SCAL 164
              L
Sbjct: 57  GNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 14/108 (12%)

Query: 11  WRGVHCR--NTTGH--VKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFG 66
           W G  C+  +T G   +  L L         R F+   IS    KL  L+ ++LS N   
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQ----GLRGFIPNDIS----KLRHLQSINLSGNSIR 455

Query: 67  GSPIPEFIGSLSKLRYLNLSCGA-PLEVPRTLRNFSGLEYLNLENSHL 113
           G+ IP  +GS++ L  L+LS  +    +P +L   + L  LNL  + L
Sbjct: 456 GN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 38.5 bits (90), Expect = 9e-04
 Identities = 29/143 (20%), Positives = 51/143 (35%), Gaps = 19/143 (13%)

Query: 48  ALLKLHDLRHLDLSNNDFG--GSPIPEFIGSLSKLRYLNLS------------CGAPLEV 93
            L K   L+ LDLS+N  G  G  + E +   S L+ L L+                 ++
Sbjct: 76  GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDL 135

Query: 94  PRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKS--RDWFQVVAKL 151
           P  L     L    LE +   ++     L     L+ L+L+   +  +  R   + +   
Sbjct: 136 PPALEKL-VLGRNRLEGASCEALAKA--LRANRDLKELNLANNGIGDAGIRALAEGLKAN 192

Query: 152 RSLKTFVLRSCALPPINPSFICG 174
            +L+   L +  L     S +  
Sbjct: 193 CNLEVLDLNNNGLTDEGASALAE 215

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 34.8 bits (81), Expect = 0.002
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 55  LRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV--PRTLRNFSGLEYLNLENSH 112
           L+ LDLSNN     P       L  L+ L+LS    L    P        L  L+L  ++
Sbjct: 2   LKSLDLSNNRLTVIP-DGAFKGLPNLKVLDLSGNN-LTSISPEAFSGLPSLRSLDLSGNN 59

Query: 113 L 113
           L
Sbjct: 60  L 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	178
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.79
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.64
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.61
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.53
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.51
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.47
PLN03150	623	hypothetical protein; Provisional	99.46
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.44
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.37
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.31
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.28
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.23
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.22
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.2
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.17
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.15
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.13
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.03
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.99
PLN03150	623	hypothetical protein; Provisional	98.97
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.95
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.93
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.88
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.86
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.85
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.84
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.81
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.8
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.74
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.74
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.73
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.72
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.67
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.61
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.59
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.58
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.53
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.52
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.52
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.5
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.35
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.3
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.25
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.22
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.22
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.18
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.16
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.13
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.13
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.11
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.1
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.05
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.01
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.91
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.88
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.86
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.8
PRK15386	426	type III secretion protein GogB; Provisional	97.71
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.62
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.4
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.36
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.27
PRK15386	426	type III secretion protein GogB; Provisional	97.19
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.99
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.95
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.23
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.09
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.51
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.29
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.18
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.87
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.79
smart00370	26	LRR Leucine-rich repeats, outliers.	93.79
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.66
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	92.14
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	89.95
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	89.14
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	86.08
KOG0473	326	consensus Leucine-rich repeat protein [Function un	85.21
KOG4341	483	consensus F-box protein containing LRR [General fu	85.14
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	83.59
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	83.33
KOG4341	483	consensus F-box protein containing LRR [General fu	82.3
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	80.23

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.79  E-value=1.6e-18  Score=149.17  Aligned_cols=161  Identities=30%  Similarity=0.444  Sum_probs=101.8

Q ss_pred             CCcCCCceeeeeeeecCCCCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhc-ccC--
Q 048040            2 EDEKRDCCKWRGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIG-SLS--   78 (178)
Q Consensus         2 ~~~~~~~c~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~-~l~--   78 (178)
                      |+...++|.|.|+.|.. .++++.|+++++        .+.+.+++.+..+++|+.|++++|.+.+. +|..+. .+.  
T Consensus        51 w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~--------~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L  120 (968)
T PLN00113         51 WNSSADVCLWQGITCNN-SSRVVSIDLSGK--------NISGKISSAIFRLPYIQTINLSNNQLSGP-IPDDIFTTSSSL  120 (968)
T ss_pred             CCCCCCCCcCcceecCC-CCcEEEEEecCC--------CccccCChHHhCCCCCCEEECCCCccCCc-CChHHhccCCCC
Confidence            33567899999999974 568999999998        44555555555555555555555555443 343322 444  


Q ss_pred             --------------------CCcEEeccCCCC-CccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCC
Q 048040           79 --------------------KLRYLNLSCGAP-LEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYIN  137 (178)
Q Consensus        79 --------------------~L~~L~l~~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~  137 (178)
                                          +|++|++++|.+ +..|..++.+++|+.|++++|.+.+. .+..++++++|++|++++|.
T Consensus       121 ~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~  199 (968)
T PLN00113        121 RYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK-IPNSLTNLTSLEFLTLASNQ  199 (968)
T ss_pred             CEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccccc-CChhhhhCcCCCeeeccCCC
Confidence                                455555555522 24455666677777777777765332 23446667777777777777


Q ss_pred             CCCcccHHHHHhccCCCcEEEecCCCCCCCCCcccccc
Q 048040          138 LTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGW  175 (178)
Q Consensus       138 i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l  175 (178)
                      +++..  +..++.+++|++|++++|.+.+.+|..++.+
T Consensus       200 l~~~~--p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l  235 (968)
T PLN00113        200 LVGQI--PRELGQMKSLKWIYLGYNNLSGEIPYEIGGL  235 (968)
T ss_pred             CcCcC--ChHHcCcCCccEEECcCCccCCcCChhHhcC
Confidence            66542  3466777777777777777777777665544

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.64  E-value=1.1e-15  Score=131.72  Aligned_cols=133  Identities=29%  Similarity=0.399  Sum_probs=77.0

Q ss_pred             cccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCC-CCCccchhccCCCCCcEEEeeCCccc
Q 048040           36 ARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCG-APLEVPRTLRNFSGLEYLNLENSHLF  114 (178)
Q Consensus        36 ~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~l~~L~~L~l~~n~l~  114 (178)
                      +++|.+.+.+|..+..+.+|++|++++|.+.+. .|..+..+++|++|++++| ..+.+|..+..+++|+.|++++|++.
T Consensus       147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  225 (968)
T PLN00113        147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK-IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS  225 (968)
T ss_pred             CcCCcccccCChHHhcCCCCCEEECccCccccc-CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC
Confidence            344466666666677777777777777776654 6666666667777777666 33345566666666666666666653


Q ss_pred             cCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCccc
Q 048040          115 SVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFI  172 (178)
Q Consensus       115 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~  172 (178)
                      +. .+..++.+++|++|++++|.+++..  +..++++++|+.|++++|.+.+.+|..+
T Consensus       226 ~~-~p~~l~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~L~~n~l~~~~p~~l  280 (968)
T PLN00113        226 GE-IPYEIGGLTSLNHLDLVYNNLTGPI--PSSLGNLKNLQYLFLYQNKLSGPIPPSI  280 (968)
T ss_pred             Cc-CChhHhcCCCCCEEECcCceecccc--ChhHhCCCCCCEEECcCCeeeccCchhH
Confidence            22 2334555566666666666554432  2244555555555555555554444443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.61  E-value=1.3e-17  Score=113.87  Aligned_cols=140  Identities=26%  Similarity=0.380  Sum_probs=98.0

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNF  100 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l  100 (178)
                      ..++.|.+++|        .++ .+|+.+..+.+|+.|++.+|.+..  +|..++.++.|+.|+++.|.+..+|.+|+.+
T Consensus        33 s~ITrLtLSHN--------Kl~-~vppnia~l~nlevln~~nnqie~--lp~~issl~klr~lnvgmnrl~~lprgfgs~  101 (264)
T KOG0617|consen   33 SNITRLTLSHN--------KLT-VVPPNIAELKNLEVLNLSNNQIEE--LPTSISSLPKLRILNVGMNRLNILPRGFGSF  101 (264)
T ss_pred             hhhhhhhcccC--------cee-ecCCcHHHhhhhhhhhcccchhhh--cChhhhhchhhhheecchhhhhcCccccCCC
Confidence            56788899998        454 455556677777777777777766  6677777777777777777666667777777


Q ss_pred             CCCcEEEeeCCccccCC-----------------------chHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEE
Q 048040          101 SGLEYLNLENSHLFSVG-----------------------SLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTF  157 (178)
Q Consensus       101 ~~L~~L~l~~n~l~~~~-----------------------~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l  157 (178)
                      +.|+.|++.+|++....                       .+..++++++|++|.++.|.+...|.   .++.+..|++|
T Consensus       102 p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpk---eig~lt~lrel  178 (264)
T KOG0617|consen  102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPK---EIGDLTRLREL  178 (264)
T ss_pred             chhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcH---HHHHHHHHHHH
Confidence            77777777776662222                       23446777788888888887766653   77888888888


Q ss_pred             EecCCCCCCCCCcccccc
Q 048040          158 VLRSCALPPINPSFICGW  175 (178)
Q Consensus       158 ~l~~n~~~~~~~~~~~~l  175 (178)
                      ++++|+++ .+|+.++.+
T Consensus       179 hiqgnrl~-vlppel~~l  195 (264)
T KOG0617|consen  179 HIQGNRLT-VLPPELANL  195 (264)
T ss_pred             hcccceee-ecChhhhhh
Confidence            88888877 566666554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.53  E-value=1.2e-16  Score=109.16  Aligned_cols=149  Identities=19%  Similarity=0.213  Sum_probs=102.6

Q ss_pred             CCeeEEEecCCccc---------------ccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEec
Q 048040           21 GHVKVLNLRTSDYE---------------FARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNL   85 (178)
Q Consensus        21 ~~l~~l~l~~~~~~---------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l   85 (178)
                      ..++.|++.+|.++               ++.+|++. .+|..|+.++.|++|++.+|.+....+|.-|..|..|+.|++
T Consensus        56 ~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl  134 (264)
T KOG0617|consen   56 KNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYL  134 (264)
T ss_pred             hhhhhhhcccchhhhcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHh
Confidence            45677788887553               22333333 345556666666666666666655445666666666666666


Q ss_pred             cCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCC
Q 048040           86 SCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALP  165 (178)
Q Consensus        86 ~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~  165 (178)
                      +.|-+..+|..++++++|+.|.+..|.+.+.  +..++.++.|++|++.+|.++-.|...+.+.-..+-+++.+.+|+..
T Consensus       135 ~dndfe~lp~dvg~lt~lqil~lrdndll~l--pkeig~lt~lrelhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPwv  212 (264)
T KOG0617|consen  135 GDNDFEILPPDVGKLTNLQILSLRDNDLLSL--PKEIGDLTRLRELHIQGNRLTVLPPELANLDLVGNKQVMRMEENPWV  212 (264)
T ss_pred             cCCCcccCChhhhhhcceeEEeeccCchhhC--cHHHHHHHHHHHHhcccceeeecChhhhhhhhhhhHHHHhhhhCCCC
Confidence            6665566788888999999999999998555  47799999999999999999988653334443445567788888877


Q ss_pred             CCCCccc
Q 048040          166 PINPSFI  172 (178)
Q Consensus       166 ~~~~~~~  172 (178)
                      ..+++.|
T Consensus       213 ~pIaeQf  219 (264)
T KOG0617|consen  213 NPIAEQF  219 (264)
T ss_pred             ChHHHHH
Confidence            6666543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.51  E-value=4.6e-15  Score=117.53  Aligned_cols=154  Identities=23%  Similarity=0.217  Sum_probs=125.1

Q ss_pred             CCeeEEEecCCccc----------------ccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEe
Q 048040           21 GHVKVLNLRTSDYE----------------FARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLN   84 (178)
Q Consensus        21 ~~l~~l~l~~~~~~----------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~   84 (178)
                      ..+++|+|..|.++                ++++|.+...-++.++.-.+|++|+|+.|.++.. .++.|..+..|+.|.
T Consensus       269 ~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l-~~~sf~~L~~Le~Ln  347 (873)
T KOG4194|consen  269 EKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRL-DEGSFRVLSQLEELN  347 (873)
T ss_pred             cccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccC-ChhHHHHHHHhhhhc
Confidence            56788888888774                6677788888888888888999999999998885 567888888899999


Q ss_pred             ccCCCCCccch-hccCCCCCcEEEeeCCccccC--CchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecC
Q 048040           85 LSCGAPLEVPR-TLRNFSGLEYLNLENSHLFSV--GSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRS  161 (178)
Q Consensus        85 l~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~  161 (178)
                      ++.|.+..+.+ .|..+.+|+.|++.+|.+...  .....+..+++|+.|++.+|.+...+  -..+.+++.|++|++.+
T Consensus       348 Ls~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~--krAfsgl~~LE~LdL~~  425 (873)
T KOG4194|consen  348 LSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP--KRAFSGLEALEHLDLGD  425 (873)
T ss_pred             ccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecc--hhhhccCcccceecCCC
Confidence            98887776654 677888999999999986211  12344777999999999999998886  36888999999999999


Q ss_pred             CCCCCCCCcccccccc
Q 048040          162 CALPPINPSFICGWEI  177 (178)
Q Consensus       162 n~~~~~~~~~~~~l~~  177 (178)
                      |.+..+.|.+|..+.+
T Consensus       426 NaiaSIq~nAFe~m~L  441 (873)
T KOG4194|consen  426 NAIASIQPNAFEPMEL  441 (873)
T ss_pred             Ccceeecccccccchh
Confidence            9999999999887754

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.47  E-value=1.9e-14  Score=114.07  Aligned_cols=156  Identities=23%  Similarity=0.251  Sum_probs=97.5

Q ss_pred             ecCCCCCeeEEEecCCccc----------------ccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCC
Q 048040           16 CRNTTGHVKVLNLRTSDYE----------------FARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSK   79 (178)
Q Consensus        16 ~~~~~~~l~~l~l~~~~~~----------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~   79 (178)
                      |......+..|+|++|.|.                .++.|.++...+..|.++++|+.|+|..|.|... -.-.|.++++
T Consensus       168 sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv-e~ltFqgL~S  246 (873)
T KOG4194|consen  168 SFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV-EGLTFQGLPS  246 (873)
T ss_pred             CCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee-hhhhhcCchh
Confidence            4445567888888888653                2233344433333444455555555555555442 2334455555


Q ss_pred             CcEEeccCCCCCccch-hccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEE
Q 048040           80 LRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFV  158 (178)
Q Consensus        80 L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~  158 (178)
                      |+.|.+..|.+..+.. .|..+.++++|++..|++.... ..++..+++|++|++++|.|....  .+.+...++|.+|+
T Consensus       247 l~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn-~g~lfgLt~L~~L~lS~NaI~rih--~d~WsftqkL~~Ld  323 (873)
T KOG4194|consen  247 LQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVN-EGWLFGLTSLEQLDLSYNAIQRIH--IDSWSFTQKLKELD  323 (873)
T ss_pred             hhhhhhhhcCcccccCcceeeecccceeecccchhhhhh-cccccccchhhhhccchhhhheee--cchhhhcccceeEe
Confidence            5555555554444322 4556677777777777764443 244677788888888888887774  35778888888899


Q ss_pred             ecCCCCCCCCCcccccc
Q 048040          159 LRSCALPPINPSFICGW  175 (178)
Q Consensus       159 l~~n~~~~~~~~~~~~l  175 (178)
                      +++|+++...++.|..|
T Consensus       324 Ls~N~i~~l~~~sf~~L  340 (873)
T KOG4194|consen  324 LSSNRITRLDEGSFRVL  340 (873)
T ss_pred             ccccccccCChhHHHHH
Confidence            98888888777766544

>PLN03150 hypothetical protein; Provisional

Probab=99.46  E-value=8.4e-13  Score=108.95  Aligned_cols=126  Identities=26%  Similarity=0.391  Sum_probs=102.9

Q ss_pred             CCcCCCce-----eeeeeeecCCC----CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchh
Q 048040            2 EDEKRDCC-----KWRGVHCRNTT----GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPE   72 (178)
Q Consensus         2 ~~~~~~~c-----~~~~~~~~~~~----~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~   72 (178)
                      +|.+. +|     .|.|+.|....    ..++.|+|+++        .+.+.+|..+..+.+|+.|+|++|.+.+. +|.
T Consensus       391 ~W~g~-~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n--------~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~  460 (623)
T PLN03150        391 GWNGD-PCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQ--------GLRGFIPNDISKLRHLQSINLSGNSIRGN-IPP  460 (623)
T ss_pred             CCCCC-CCCCcccccccceeeccCCCCceEEEEEECCCC--------CccccCCHHHhCCCCCCEEECCCCcccCc-CCh
Confidence            57664 55     69999995321    24889999999        88999999999999999999999999986 899


Q ss_pred             hhcccCCCcEEeccCC-CCCccchhccCCCCCcEEEeeCCccccCCchHHHhc-cCCCCEEeccCCCC
Q 048040           73 FIGSLSKLRYLNLSCG-APLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSH-LSSLRHLDLSYINL  138 (178)
Q Consensus        73 ~l~~l~~L~~L~l~~~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~l~~n~i  138 (178)
                      .+..+++|+.|++++| ..+.+|..+..+++|+.|++++|++.+. .+..++. ..++..+++.+|..
T Consensus       461 ~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~-iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        461 SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGR-VPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             HHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccccc-CChHHhhccccCceEEecCCcc
Confidence            9999999999999999 4557888999999999999999997544 3344544 34667888888763

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.44  E-value=6.4e-14  Score=106.79  Aligned_cols=143  Identities=26%  Similarity=0.308  Sum_probs=121.6

Q ss_pred             CCeeEEEecCCccc---------------ccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEec
Q 048040           21 GHVKVLNLRTSDYE---------------FARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNL   85 (178)
Q Consensus        21 ~~l~~l~l~~~~~~---------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l   85 (178)
                      .-|+.++++.|.++               ....+...+.+|..+..+++|..|++++|.+.+  +|..+..+..||.+++
T Consensus       388 ~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~--LP~e~~~lv~Lq~Lnl  465 (565)
T KOG0472|consen  388 EIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLND--LPEEMGSLVRLQTLNL  465 (565)
T ss_pred             cceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhh--cchhhhhhhhhheecc
Confidence            44788999999884               223444455778888999999999999999998  8999999999999999


Q ss_pred             cCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCC
Q 048040           86 SCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALP  165 (178)
Q Consensus        86 ~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~  165 (178)
                      +.|.+..+|.....+..++++-.+.|++...+ +..+++|.+|.+||+.+|.+...|.   .+++|.+|++|.+.+|+|.
T Consensus       466 S~NrFr~lP~~~y~lq~lEtllas~nqi~~vd-~~~l~nm~nL~tLDL~nNdlq~IPp---~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  466 SFNRFRMLPECLYELQTLETLLASNNQIGSVD-PSGLKNMRNLTTLDLQNNDLQQIPP---ILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             cccccccchHHHhhHHHHHHHHhccccccccC-hHHhhhhhhcceeccCCCchhhCCh---hhccccceeEEEecCCccC
Confidence            99988899998888888999888889985554 4558999999999999999988875   8999999999999999998


Q ss_pred             CCCCc
Q 048040          166 PINPS  170 (178)
Q Consensus       166 ~~~~~  170 (178)
                       .++.
T Consensus       542 -~Pr~  545 (565)
T KOG0472|consen  542 -QPRH  545 (565)
T ss_pred             -CCHH
Confidence             3443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.37  E-value=8.8e-13  Score=91.81  Aligned_cols=126  Identities=32%  Similarity=0.370  Sum_probs=58.2

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhh-CCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhc-c
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALL-KLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTL-R   98 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~   98 (178)
                      ..+++|+|++|.|..+.          .+. .+.+|+.|++++|.++..   ..+..++.|+.|++++|.+..+++.+ .
T Consensus        19 ~~~~~L~L~~n~I~~Ie----------~L~~~l~~L~~L~Ls~N~I~~l---~~l~~L~~L~~L~L~~N~I~~i~~~l~~   85 (175)
T PF14580_consen   19 VKLRELNLRGNQISTIE----------NLGATLDKLEVLDLSNNQITKL---EGLPGLPRLKTLDLSNNRISSISEGLDK   85 (175)
T ss_dssp             ---------------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS---S-CHHHHH
T ss_pred             ccccccccccccccccc----------chhhhhcCCCEEECCCCCCccc---cCccChhhhhhcccCCCCCCccccchHH
Confidence            45688999999443221          133 467899999999999973   35778899999999999888876555 4


Q ss_pred             CCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccH-HHHHhccCCCcEEEe
Q 048040           99 NFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDW-FQVVAKLRSLKTFVL  159 (178)
Q Consensus        99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~-~~~~~~l~~L~~l~l  159 (178)
                      .+++|+.|++++|++........+..+++|+.|++.+|+++..+.+ ...+..+|+|+.||-
T Consensus        86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            6899999999999998877777788999999999999999877542 446678899998874

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.31  E-value=5.2e-13  Score=107.21  Aligned_cols=83  Identities=25%  Similarity=0.338  Sum_probs=47.2

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNF  100 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l  100 (178)
                      ..++.|||++|.        +. +.|..+.+.+++.+|+|++|.|..+ .-+-+-+++.|-+|++++|.+..+|+.+..+
T Consensus       103 ~dLt~lDLShNq--------L~-EvP~~LE~AKn~iVLNLS~N~IetI-Pn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL  172 (1255)
T KOG0444|consen  103 KDLTILDLSHNQ--------LR-EVPTNLEYAKNSIVLNLSYNNIETI-PNSLFINLTDLLFLDLSNNRLEMLPPQIRRL  172 (1255)
T ss_pred             ccceeeecchhh--------hh-hcchhhhhhcCcEEEEcccCccccC-CchHHHhhHhHhhhccccchhhhcCHHHHHH
Confidence            457888898884        44 4555555666666666666666553 2223345555555555555555555555555


Q ss_pred             CCCcEEEeeCCcc
Q 048040          101 SGLEYLNLENSHL  113 (178)
Q Consensus       101 ~~L~~L~l~~n~l  113 (178)
                      ..|++|.+++|.+
T Consensus       173 ~~LqtL~Ls~NPL  185 (1255)
T KOG0444|consen  173 SMLQTLKLSNNPL  185 (1255)
T ss_pred             hhhhhhhcCCChh
Confidence            5555555555554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.28  E-value=4.1e-13  Score=99.32  Aligned_cols=131  Identities=23%  Similarity=0.270  Sum_probs=109.2

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNF  100 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l  100 (178)
                      ..++++|+++|        .++ .+..++.-.++++.|+++.|.+...   +.+..+++|+.||+++|.+..+-..-.++
T Consensus       284 q~LtelDLS~N--------~I~-~iDESvKL~Pkir~L~lS~N~i~~v---~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KL  351 (490)
T KOG1259|consen  284 QELTELDLSGN--------LIT-QIDESVKLAPKLRRLILSQNRIRTV---QNLAELPQLQLLDLSGNLLAECVGWHLKL  351 (490)
T ss_pred             hhhhhcccccc--------chh-hhhhhhhhccceeEEeccccceeee---hhhhhcccceEeecccchhHhhhhhHhhh
Confidence            56899999999        443 4555666788999999999999873   33889999999999999776665555678


Q ss_pred             CCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCC
Q 048040          101 SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPI  167 (178)
Q Consensus       101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~  167 (178)
                      .++++|.+++|.+.+..   -++.+.+|..||+++|+|....+ ...++++|-|+++.+.+|++.++
T Consensus       352 GNIKtL~La~N~iE~LS---GL~KLYSLvnLDl~~N~Ie~lde-V~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  352 GNIKTLKLAQNKIETLS---GLRKLYSLVNLDLSSNQIEELDE-VNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             cCEeeeehhhhhHhhhh---hhHhhhhheeccccccchhhHHH-hcccccccHHHHHhhcCCCcccc
Confidence            89999999999986553   37888899999999999988865 67899999999999999999854

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.23  E-value=2e-12  Score=103.96  Aligned_cols=132  Identities=17%  Similarity=0.239  Sum_probs=69.6

Q ss_pred             CCeeEEEecCCccccccccccc-ccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLK-GTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRN   99 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~   99 (178)
                      +.|..+|+++|+        |. +..|..+..|+++++|.|...++..  +|..++.+..|++|.+..|.+..+-..++.
T Consensus         7 pFVrGvDfsgND--------Fsg~~FP~~v~qMt~~~WLkLnrt~L~~--vPeEL~~lqkLEHLs~~HN~L~~vhGELs~   76 (1255)
T KOG0444|consen    7 PFVRGVDFSGND--------FSGDRFPHDVEQMTQMTWLKLNRTKLEQ--VPEELSRLQKLEHLSMAHNQLISVHGELSD   76 (1255)
T ss_pred             ceeecccccCCc--------CCCCcCchhHHHhhheeEEEechhhhhh--ChHHHHHHhhhhhhhhhhhhhHhhhhhhcc
Confidence            567889999994        44 3455555566666666665555554  455555555555555555544333334444


Q ss_pred             CCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCC
Q 048040          100 FSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALP  165 (178)
Q Consensus       100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~  165 (178)
                      ++.|+.+.+..|++...+.+..+-.+.-|++||++.|.+...|.   .+..-+++.+|++++|.|.
T Consensus        77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~---~LE~AKn~iVLNLS~N~Ie  139 (1255)
T KOG0444|consen   77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPT---NLEYAKNSIVLNLSYNNIE  139 (1255)
T ss_pred             chhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcch---hhhhhcCcEEEEcccCccc
Confidence            45555555555554444444444444444555555544444432   3444444444444444444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.22  E-value=1.2e-11  Score=86.13  Aligned_cols=112  Identities=23%  Similarity=0.323  Sum_probs=45.5

Q ss_pred             hhCCCCCCEEEccCCCCCCCCchhhhc-ccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCC
Q 048040           49 LLKLHDLRHLDLSNNDFGGSPIPEFIG-SLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSS  127 (178)
Q Consensus        49 l~~l~~L~~L~l~~n~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  127 (178)
                      +-+..+++.|+|++|.|+..  . .+. .+.+|+.|++++|.+..+ +.+..++.|++|++++|++..... .....+++
T Consensus        15 ~~n~~~~~~L~L~~n~I~~I--e-~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~i~~-~l~~~lp~   89 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTI--E-NLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISSISE-GLDKNLPN   89 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CH-HHHHH-TT
T ss_pred             cccccccccccccccccccc--c-chhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCcccc-chHHhCCc
Confidence            34556789999999999873  2 343 578999999999988776 367789999999999999976642 22356899


Q ss_pred             CCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCC
Q 048040          128 LRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPP  166 (178)
Q Consensus       128 L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~  166 (178)
                      |++|++++|.|.+..+ ...++.+++|++|++.+|++..
T Consensus        90 L~~L~L~~N~I~~l~~-l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   90 LQELYLSNNKISDLNE-LEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             --EEE-TTS---SCCC-CGGGGG-TT--EEE-TT-GGGG
T ss_pred             CCEEECcCCcCCChHH-hHHHHcCCCcceeeccCCcccc
Confidence            9999999999988854 4678899999999999999874

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.20  E-value=7e-12  Score=103.91  Aligned_cols=123  Identities=27%  Similarity=0.316  Sum_probs=100.1

Q ss_pred             ccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccc
Q 048040           35 FARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLF  114 (178)
Q Consensus        35 ~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~  114 (178)
                      .+.+|.++...-+.+.++++|++|+|++|.+..- ....+.++..|+.|++++|.+..+|..+..+..|++|...+|++.
T Consensus       365 ylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f-pas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~  443 (1081)
T KOG0618|consen  365 YLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF-PASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLL  443 (1081)
T ss_pred             HHhcCcccccchhhhccccceeeeeecccccccC-CHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCcee
Confidence            5577788877778888999999999999999873 345678899999999999999999998889999999999999984


Q ss_pred             cCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCC
Q 048040          115 SVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCA  163 (178)
Q Consensus       115 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~  163 (178)
                      ..+   .+..++.|+.+|++.|.++..--  ......++|++|++++|.
T Consensus       444 ~fP---e~~~l~qL~~lDlS~N~L~~~~l--~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  444 SFP---ELAQLPQLKVLDLSCNNLSEVTL--PEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             ech---hhhhcCcceEEecccchhhhhhh--hhhCCCcccceeeccCCc
Confidence            443   48888999999999999877631  122333789999999986

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.17  E-value=7.9e-11  Score=89.63  Aligned_cols=11  Identities=18%  Similarity=0.271  Sum_probs=6.3

Q ss_pred             CCeeEEEecCC
Q 048040           21 GHVKVLNLRTS   31 (178)
Q Consensus        21 ~~l~~l~l~~~   31 (178)
                      ..++.|++++|
T Consensus        81 ~~L~~L~l~~~   91 (319)
T cd00116          81 CGLQELDLSDN   91 (319)
T ss_pred             CceeEEEccCC
Confidence            35556666555

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.15  E-value=1.7e-10  Score=87.75  Aligned_cols=121  Identities=30%  Similarity=0.362  Sum_probs=70.6

Q ss_pred             hhhhCCCCCCEEEccCCCCCCCC---chhhhcccCCCcEEeccCCCCCc-----cchhccCCCCCcEEEeeCCccccCCc
Q 048040           47 PALLKLHDLRHLDLSNNDFGGSP---IPEFIGSLSKLRYLNLSCGAPLE-----VPRTLRNFSGLEYLNLENSHLFSVGS  118 (178)
Q Consensus        47 ~~l~~l~~L~~L~l~~n~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~  118 (178)
                      ..+..+.+|+.|++++|.+++..   ++..+..++.|++|++++|.+..     ++..+..+++|+.|++++|.+.....
T Consensus       159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~  238 (319)
T cd00116         159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA  238 (319)
T ss_pred             HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence            34555666777777777776421   22334445577777777764432     22344556777777777777643222


Q ss_pred             hHHHhc----cCCCCEEeccCCCCCCc--ccHHHHHhccCCCcEEEecCCCCCCC
Q 048040          119 LEWLSH----LSSLRHLDLSYINLTKS--RDWFQVVAKLRSLKTFVLRSCALPPI  167 (178)
Q Consensus       119 ~~~~~~----l~~L~~L~l~~n~i~~~--~~~~~~~~~l~~L~~l~l~~n~~~~~  167 (178)
                      ......    .+.|++|++++|.+++.  ..+...+..+++|+++++++|.+...
T Consensus       239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence            221222    25777777777777633  22344556667777777777777643

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.13  E-value=2.1e-12  Score=98.66  Aligned_cols=118  Identities=27%  Similarity=0.336  Sum_probs=71.2

Q ss_pred             CCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEE
Q 048040           52 LHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHL  131 (178)
Q Consensus        52 l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  131 (178)
                      |+.|+.++.-.|.++.  +|+.++.|..|.-|++..|.+.++| .|..+..|..+.++.|++...+ ......+.++.+|
T Consensus       182 m~~L~~ld~~~N~L~t--lP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lp-ae~~~~L~~l~vL  257 (565)
T KOG0472|consen  182 MKRLKHLDCNSNLLET--LPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLP-AEHLKHLNSLLVL  257 (565)
T ss_pred             HHHHHhcccchhhhhc--CChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhH-HHHhcccccceee
Confidence            4444444444444443  4444444444444444444444444 3444444444445555443322 1224477888999


Q ss_pred             eccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCcccccccc
Q 048040          132 DLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGWEI  177 (178)
Q Consensus       132 ~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~  177 (178)
                      |++.|+++..|+   .+-.+++|..||+++|.++ ..|..++.+++
T Consensus       258 DLRdNklke~Pd---e~clLrsL~rLDlSNN~is-~Lp~sLgnlhL  299 (565)
T KOG0472|consen  258 DLRDNKLKEVPD---EICLLRSLERLDLSNNDIS-SLPYSLGNLHL  299 (565)
T ss_pred             eccccccccCch---HHHHhhhhhhhcccCCccc-cCCccccccee
Confidence            999999888875   7777888899999999988 46777777654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.03  E-value=1.5e-10  Score=88.30  Aligned_cols=65  Identities=26%  Similarity=0.306  Sum_probs=47.1

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccC-CCCCccc
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSC-GAPLEVP   94 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~   94 (178)
                      ...+.|+|.-|        .++...+.+|..+.+|+.|+|+.|.|+.+ -|+.|.++.++..|.+.+ |.+..+|
T Consensus        67 ~~tveirLdqN--------~I~~iP~~aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~~l~  132 (498)
T KOG4237|consen   67 PETVEIRLDQN--------QISSIPPGAFKTLHRLRRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKITDLP  132 (498)
T ss_pred             CcceEEEeccC--------CcccCChhhccchhhhceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchhhhh
Confidence            44566666666        77766667888888888888888888887 677777777776666555 5665554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.99  E-value=8.8e-10  Score=92.34  Aligned_cols=43  Identities=21%  Similarity=0.145  Sum_probs=32.3

Q ss_pred             CCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCccc
Q 048040          127 SLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFI  172 (178)
Q Consensus       127 ~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~  172 (178)
                      +|+.|++++|.++..|   ..+..++.|+.|++++|++++..|..+
T Consensus       423 ~L~~L~Ls~NqLt~LP---~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        423 GLLSLSVYRNQLTRLP---ESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             hhhhhhhccCcccccC---hHHhhccCCCeEECCCCCCCchHHHHH
Confidence            4556666666666554   367788899999999999998777765

>PLN03150 hypothetical protein; Provisional

Probab=98.97  E-value=5.4e-09  Score=86.61  Aligned_cols=108  Identities=28%  Similarity=0.302  Sum_probs=79.7

Q ss_pred             CCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCC-CccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEec
Q 048040           55 LRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAP-LEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDL  133 (178)
Q Consensus        55 L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  133 (178)
                      ++.|+|++|.+.+. +|..+..+++|+.|++++|.+ +.+|..+..+++|+.|++++|++.+. .+..++.+++|++|++
T Consensus       420 v~~L~L~~n~L~g~-ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        420 IDGLGLDNQGLRGF-IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEECCCCCcccc-CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEEC
Confidence            67778888888876 788888888888888888844 46777888888888888888887433 3456788888888888


Q ss_pred             cCCCCCCcccHHHHHhc-cCCCcEEEecCCCCCC
Q 048040          134 SYINLTKSRDWFQVVAK-LRSLKTFVLRSCALPP  166 (178)
Q Consensus       134 ~~n~i~~~~~~~~~~~~-l~~L~~l~l~~n~~~~  166 (178)
                      ++|.+++..  +..+.. ..++..+++.+|....
T Consensus       498 s~N~l~g~i--P~~l~~~~~~~~~l~~~~N~~lc  529 (623)
T PLN03150        498 NGNSLSGRV--PAALGGRLLHRASFNFTDNAGLC  529 (623)
T ss_pred             cCCcccccC--ChHHhhccccCceEEecCCcccc
Confidence            888887662  234443 3456678887776543

>PLN03210 Resistant to P

Probab=98.95  E-value=4.3e-09  Score=92.68  Aligned_cols=62  Identities=29%  Similarity=0.287  Sum_probs=38.6

Q ss_pred             hhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCC-CCCccchhccCCCCCcEEEeeCCc
Q 048040           49 LLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCG-APLEVPRTLRNFSGLEYLNLENSH  112 (178)
Q Consensus        49 l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~l~~L~~L~l~~n~  112 (178)
                      +..+++|+.|++++|..... +|..+..+++|+.|++++| .+..+|..+ ++++|+.|++++|.
T Consensus       653 ls~l~~Le~L~L~~c~~L~~-lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~  715 (1153)
T PLN03210        653 LSMATNLETLKLSDCSSLVE-LPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCS  715 (1153)
T ss_pred             cccCCcccEEEecCCCCccc-cchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCC
Confidence            55666777777777654443 6666777777777777766 555555543 45555555555553

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=98.93  E-value=1.2e-08  Score=89.94  Aligned_cols=113  Identities=20%  Similarity=0.189  Sum_probs=82.6

Q ss_pred             CCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCC-CCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCE
Q 048040           52 LHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCG-APLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRH  130 (178)
Q Consensus        52 l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  130 (178)
                      .++|+.|++++|..... +|..+..+++|+.|++++| .+..+|..+ .+++|+.|++++|..... .   .....+|+.
T Consensus       777 ~~sL~~L~Ls~n~~l~~-lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~-~---p~~~~nL~~  850 (1153)
T PLN03210        777 SPSLTRLFLSDIPSLVE-LPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRT-F---PDISTNISD  850 (1153)
T ss_pred             cccchheeCCCCCCccc-cChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccc-c---cccccccCE
Confidence            45788888888876654 7888899999999999887 677777765 688899999988763221 1   122357889


Q ss_pred             EeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCcccc
Q 048040          131 LDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFIC  173 (178)
Q Consensus       131 L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~  173 (178)
                      |++++|.++..|.   .+..+++|+.|++.+|.-...+|..+.
T Consensus       851 L~Ls~n~i~~iP~---si~~l~~L~~L~L~~C~~L~~l~~~~~  890 (1153)
T PLN03210        851 LNLSRTGIEEVPW---WIEKFSNLSFLDMNGCNNLQRVSLNIS  890 (1153)
T ss_pred             eECCCCCCccChH---HHhcCCCCCEEECCCCCCcCccCcccc
Confidence            9999998887764   678888899998888533334554433

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.88  E-value=4.7e-09  Score=88.15  Aligned_cols=101  Identities=27%  Similarity=0.325  Sum_probs=51.9

Q ss_pred             CCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhcc-------------------CCCCCcEEEeeCCccc
Q 048040           54 DLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLR-------------------NFSGLEYLNLENSHLF  114 (178)
Q Consensus        54 ~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-------------------~l~~L~~L~l~~n~l~  114 (178)
                      +|+.|++++|.++.  +|..+.  .+|+.|++++|.+..+|..+.                   ..++|+.|++++|.+.
T Consensus       263 ~L~~L~Ls~N~L~~--LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt  338 (754)
T PRK15370        263 ALQSLDLFHNKISC--LPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALT  338 (754)
T ss_pred             CCCEEECcCCccCc--cccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccc
Confidence            55666666666654  444332  356666666654444433211                   0123455555555443


Q ss_pred             cCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCC
Q 048040          115 SVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPI  167 (178)
Q Consensus       115 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~  167 (178)
                      ..+  ..+  .++|+.|++++|.++..|.   .+  .++|+.|++++|.++..
T Consensus       339 ~LP--~~l--~~sL~~L~Ls~N~L~~LP~---~l--p~~L~~LdLs~N~Lt~L  382 (754)
T PRK15370        339 SLP--ASL--PPELQVLDVSKNQITVLPE---TL--PPTITTLDVSRNALTNL  382 (754)
T ss_pred             cCC--hhh--cCcccEEECCCCCCCcCCh---hh--cCCcCEEECCCCcCCCC
Confidence            322  111  2466777777776665542   22  25677777777777643

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.86  E-value=9.3e-09  Score=86.38  Aligned_cols=99  Identities=22%  Similarity=0.302  Sum_probs=48.7

Q ss_pred             CeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCC
Q 048040           22 HVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFS  101 (178)
Q Consensus        22 ~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~  101 (178)
                      .++.|++++|        .+. .+|..+.  .+|+.|++++|.++.  +|..+.  ..|+.|++++|.+..+|..+.  .
T Consensus       200 ~L~~L~Ls~N--------~Lt-sLP~~l~--~nL~~L~Ls~N~Lts--LP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s  262 (754)
T PRK15370        200 QITTLILDNN--------ELK-SLPENLQ--GNIKTLYANSNQLTS--IPATLP--DTIQEMELSINRITELPERLP--S  262 (754)
T ss_pred             CCcEEEecCC--------CCC-cCChhhc--cCCCEEECCCCcccc--CChhhh--ccccEEECcCCccCcCChhHh--C
Confidence            4555666665        444 2333322  356666666666654  444332  245556665555445544332  3


Q ss_pred             CCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCc
Q 048040          102 GLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKS  141 (178)
Q Consensus       102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~  141 (178)
                      +|+.|++++|++...+.  .+  .++|+.|++++|.++..
T Consensus       263 ~L~~L~Ls~N~L~~LP~--~l--~~sL~~L~Ls~N~Lt~L  298 (754)
T PRK15370        263 ALQSLDLFHNKISCLPE--NL--PEELRYLSVYDNSIRTL  298 (754)
T ss_pred             CCCEEECcCCccCcccc--cc--CCCCcEEECCCCccccC
Confidence            45555555555543221  11  13455555555555544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.85  E-value=1.3e-09  Score=90.81  Aligned_cols=128  Identities=27%  Similarity=0.328  Sum_probs=103.9

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNF  100 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l  100 (178)
                      .++..|+|++|        .++......+.++..|+.|+|+||.++.  +|..+..+..|++|...+|.+..+| .+..+
T Consensus       383 ~hLKVLhLsyN--------rL~~fpas~~~kle~LeeL~LSGNkL~~--Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l  451 (1081)
T KOG0618|consen  383 KHLKVLHLSYN--------RLNSFPASKLRKLEELEELNLSGNKLTT--LPDTVANLGRLHTLRAHSNQLLSFP-ELAQL  451 (1081)
T ss_pred             cceeeeeeccc--------ccccCCHHHHhchHHhHHHhcccchhhh--hhHHHHhhhhhHHHhhcCCceeech-hhhhc
Confidence            67899999999        6775445578889999999999999998  8899999999999999999888888 78899


Q ss_pred             CCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCC
Q 048040          101 SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSC  162 (178)
Q Consensus       101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n  162 (178)
                      +.|++++++.|.+.....+. ...-++|++||++||.-..+.  -..+..+..+..+++.-+
T Consensus       452 ~qL~~lDlS~N~L~~~~l~~-~~p~p~LkyLdlSGN~~l~~d--~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  452 PQLKVLDLSCNNLSEVTLPE-ALPSPNLKYLDLSGNTRLVFD--HKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             CcceEEecccchhhhhhhhh-hCCCcccceeeccCCcccccc--hhhhHHhhhhhheecccC
Confidence            99999999999986554432 222279999999999865553  246777777777777655

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.84  E-value=2.6e-10  Score=90.60  Aligned_cols=132  Identities=30%  Similarity=0.388  Sum_probs=98.1

Q ss_pred             eeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCC
Q 048040           23 VKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSG  102 (178)
Q Consensus        23 l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~  102 (178)
                      ++.+||+-|        .+. .+|..+..+ -|+.|.+++|+++.  +|..++.+..|..|+.+.|.+..+|..+..+.+
T Consensus       123 lt~l~ls~N--------qlS-~lp~~lC~l-pLkvli~sNNkl~~--lp~~ig~~~tl~~ld~s~nei~slpsql~~l~s  190 (722)
T KOG0532|consen  123 LTFLDLSSN--------QLS-HLPDGLCDL-PLKVLIVSNNKLTS--LPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTS  190 (722)
T ss_pred             HHHhhhccc--------hhh-cCChhhhcC-cceeEEEecCcccc--CCcccccchhHHHhhhhhhhhhhchHHhhhHHH
Confidence            444555555        444 345444333 47888888888887  677777778888888888877778888888888


Q ss_pred             CcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCcccc
Q 048040          103 LEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFIC  173 (178)
Q Consensus       103 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~  173 (178)
                      |+.|++.+|++...  +..+. .-.|..||++.|++...|-   .+.+|+.|++|-|.+|++. .+|..++
T Consensus       191 lr~l~vrRn~l~~l--p~El~-~LpLi~lDfScNkis~iPv---~fr~m~~Lq~l~LenNPLq-SPPAqIC  254 (722)
T KOG0532|consen  191 LRDLNVRRNHLEDL--PEELC-SLPLIRLDFSCNKISYLPV---DFRKMRHLQVLQLENNPLQ-SPPAQIC  254 (722)
T ss_pred             HHHHHHhhhhhhhC--CHHHh-CCceeeeecccCceeecch---hhhhhhhheeeeeccCCCC-CChHHHH
Confidence            88888888887444  34455 3458899999999998874   8889999999999999988 4555544

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=9e-10  Score=85.03  Aligned_cols=115  Identities=17%  Similarity=0.198  Sum_probs=81.6

Q ss_pred             CCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCC-CCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCC
Q 048040           51 KLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGA-PLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLR  129 (178)
Q Consensus        51 ~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  129 (178)
                      .+.+|+.|.++.|+++..++...+..+++|+.|++..|. +..-......+..|+.|++++|++.+.......+.++.|+
T Consensus       195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~  274 (505)
T KOG3207|consen  195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN  274 (505)
T ss_pred             hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence            567788888888888876566667778888888888772 2221122334567888999999887776556678888888


Q ss_pred             EEeccCCCCCCcccH----HHHHhccCCCcEEEecCCCCC
Q 048040          130 HLDLSYINLTKSRDW----FQVVAKLRSLKTFVLRSCALP  165 (178)
Q Consensus       130 ~L~l~~n~i~~~~~~----~~~~~~l~~L~~l~l~~n~~~  165 (178)
                      .|.++.+++......    .......++|+.|++..|++.
T Consensus       275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             hhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence            888888888766210    112356678888888888875

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.80  E-value=1e-10  Score=95.32  Aligned_cols=127  Identities=29%  Similarity=0.380  Sum_probs=101.2

Q ss_pred             CeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch-hccCC
Q 048040           22 HVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRNF  100 (178)
Q Consensus        22 ~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l  100 (178)
                      .+...++++|        .+. .+..++.-++.|+.|+|+.|+++..   +.+..++.|++||+++|.++.+|. ....+
T Consensus       165 ~L~~a~fsyN--------~L~-~mD~SLqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc  232 (1096)
T KOG1859|consen  165 KLATASFSYN--------RLV-LMDESLQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC  232 (1096)
T ss_pred             hHhhhhcchh--------hHH-hHHHHHHHHHHhhhhccchhhhhhh---HHHHhcccccccccccchhccccccchhhh
Confidence            3455666666        555 4556777888999999999999873   378899999999999998888876 33344


Q ss_pred             CCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCC
Q 048040          101 SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALP  165 (178)
Q Consensus       101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~  165 (178)
                      . |+.|++.+|.+++...   +.++.+|+.||+++|-+.++.+ ...+..+..|+.|.+.+|++-
T Consensus       233 ~-L~~L~lrnN~l~tL~g---ie~LksL~~LDlsyNll~~hse-L~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  233 K-LQLLNLRNNALTTLRG---IENLKSLYGLDLSYNLLSEHSE-LEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             h-heeeeecccHHHhhhh---HHhhhhhhccchhHhhhhcchh-hhHHHHHHHHHHHhhcCCccc
Confidence            4 9999999999876643   7888999999999999998865 456777888999999999864

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.74  E-value=1.9e-09  Score=82.43  Aligned_cols=153  Identities=20%  Similarity=0.275  Sum_probs=111.9

Q ss_pred             CceeeeeeeecCCC--CCe--eEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcE
Q 048040            7 DCCKWRGVHCRNTT--GHV--KVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRY   82 (178)
Q Consensus         7 ~~c~~~~~~~~~~~--~~l--~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~   82 (178)
                      ..|...+.+|...+  +.+  ...+.++.++.     .+...+|+      ....++|..|.|+.. .+..|..++.|+.
T Consensus        28 ~~C~~~~~~CP~pC~Cs~~~g~~VdCr~~GL~-----eVP~~LP~------~tveirLdqN~I~~i-P~~aF~~l~~LRr   95 (498)
T KOG4237|consen   28 PTCAHSASACPAPCTCSDVEGGIVDCRGKGLT-----EVPANLPP------ETVEIRLDQNQISSI-PPGAFKTLHRLRR   95 (498)
T ss_pred             hhhhhccccCCCCcccCCCCCceEEccCCCcc-----cCcccCCC------cceEEEeccCCcccC-Chhhccchhhhce
Confidence            34555555665422  222  34566666332     23333443      557889999999997 6789999999999


Q ss_pred             EeccCCCCCcc-chhccCCCCCcEEEeeC-CccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEec
Q 048040           83 LNLSCGAPLEV-PRTLRNFSGLEYLNLEN-SHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLR  160 (178)
Q Consensus        83 L~l~~~~~~~~-~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~  160 (178)
                      |+++.|.+..+ |.+|..+..+..|-+-+ |+++..+ ...++.+.+++.|.+.-|.+....  .+.+..++++..|.+-
T Consensus        96 LdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~-k~~F~gL~slqrLllNan~i~Cir--~~al~dL~~l~lLsly  172 (498)
T KOG4237|consen   96 LDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLP-KGAFGGLSSLQRLLLNANHINCIR--QDALRDLPSLSLLSLY  172 (498)
T ss_pred             ecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhh-hhHhhhHHHHHHHhcChhhhcchh--HHHHHHhhhcchhccc
Confidence            99999988877 67899998877776655 8887665 355899999999999999988875  4688999999999999


Q ss_pred             CCCCCCCCCccccc
Q 048040          161 SCALPPINPSFICG  174 (178)
Q Consensus       161 ~n~~~~~~~~~~~~  174 (178)
                      +|.+..+.-..+.+
T Consensus       173 Dn~~q~i~~~tf~~  186 (498)
T KOG4237|consen  173 DNKIQSICKGTFQG  186 (498)
T ss_pred             chhhhhhccccccc
Confidence            99887544435444

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.74  E-value=8.8e-09  Score=59.42  Aligned_cols=56  Identities=36%  Similarity=0.559  Sum_probs=22.0

Q ss_pred             CCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch-hccCCCCCcEEEeeCC
Q 048040           55 LRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENS  111 (178)
Q Consensus        55 L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~n  111 (178)
                      |++|++++|.++.. .+..|..+++|++|++++|.+..++. .|..+++|+.|++++|
T Consensus         3 L~~L~l~~n~l~~i-~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    3 LESLDLSNNKLTEI-PPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             ESEEEETSSTESEE-CTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             CcEEECCCCCCCcc-CHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            34444444444432 22333444444444444443333322 3334444444444443

...

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.73  E-value=7.5e-08  Score=80.99  Aligned_cols=101  Identities=23%  Similarity=0.249  Sum_probs=54.0

Q ss_pred             CCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEe
Q 048040           53 HDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLD  132 (178)
Q Consensus        53 ~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  132 (178)
                      ++|+.|++++|.++.  +|..   .++|+.|++.+|.+..+|..   ..+|+.|++++|++...+.     .+++|+.|+
T Consensus       242 ~~Lk~LdLs~N~Lts--LP~l---p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~-----~p~~L~~Ld  308 (788)
T PRK15387        242 PELRTLEVSGNQLTS--LPVL---PPGLLELSIFSNPLTHLPAL---PSGLCKLWIFGNQLTSLPV-----LPPGLQELS  308 (788)
T ss_pred             CCCcEEEecCCccCc--ccCc---ccccceeeccCCchhhhhhc---hhhcCEEECcCCccccccc-----cccccceeE
Confidence            445555555555554  2321   23445555555544333331   1345566666666644331     235788888


Q ss_pred             ccCCCCCCcccHHHHHhc-------------c-CCCcEEEecCCCCCC
Q 048040          133 LSYINLTKSRDWFQVVAK-------------L-RSLKTFVLRSCALPP  166 (178)
Q Consensus       133 l~~n~i~~~~~~~~~~~~-------------l-~~L~~l~l~~n~~~~  166 (178)
                      +++|.++..+..+..+..             + .+|++|++++|++++
T Consensus       309 LS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~  356 (788)
T PRK15387        309 VSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS  356 (788)
T ss_pred             CCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCC
Confidence            888887776432222211             1 257778888888775

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.72  E-value=2e-10  Score=91.23  Aligned_cols=122  Identities=23%  Similarity=0.286  Sum_probs=72.5

Q ss_pred             cchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHh
Q 048040           44 TISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLS  123 (178)
Q Consensus        44 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  123 (178)
                      .+|..+..+..|..++++.|.++.  +|..++.++ |+.|-+++|.+..+|+.++.++.|..|+.+.|.+.+.+  ..++
T Consensus       112 ~ip~~i~~L~~lt~l~ls~NqlS~--lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slp--sql~  186 (722)
T KOG0532|consen  112 TIPEAICNLEALTFLDLSSNQLSH--LPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLP--SQLG  186 (722)
T ss_pred             ecchhhhhhhHHHHhhhccchhhc--CChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhch--HHhh
Confidence            344555566666666666666665  455554333 45555666666666666665566666666666654433  3356


Q ss_pred             ccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCcccccc
Q 048040          124 HLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGW  175 (178)
Q Consensus       124 ~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l  175 (178)
                      .+.+|+.|.++.|.+..+|+   .+. .-.|..||++.|++. .+|-.|..|
T Consensus       187 ~l~slr~l~vrRn~l~~lp~---El~-~LpLi~lDfScNkis-~iPv~fr~m  233 (722)
T KOG0532|consen  187 YLTSLRDLNVRRNHLEDLPE---ELC-SLPLIRLDFSCNKIS-YLPVDFRKM  233 (722)
T ss_pred             hHHHHHHHHHhhhhhhhCCH---HHh-CCceeeeecccCcee-ecchhhhhh
Confidence            66666666666666666653   444 335667777777777 466555554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.67  E-value=2e-08  Score=57.94  Aligned_cols=60  Identities=32%  Similarity=0.472  Sum_probs=52.3

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGA   89 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~   89 (178)
                      ++++.|++++|        .+....+..|.++++|++|++++|.+... .+..|..+++|++|++++|.
T Consensus         1 p~L~~L~l~~n--------~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNN--------KLTEIPPDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSS--------TESEECTTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCC--------CCCccCHHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCCc
Confidence            36889999999        77765566888999999999999999985 57789999999999999984

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.61  E-value=3.4e-08  Score=77.61  Aligned_cols=134  Identities=30%  Similarity=0.450  Sum_probs=81.0

Q ss_pred             CeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCC
Q 048040           22 HVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFS  101 (178)
Q Consensus        22 ~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~  101 (178)
                      .++.|++++|.+        . .+|..+..+++|+.|+++.|.+..  ++.....++.|+.|++++|.+..+|.......
T Consensus       141 nL~~L~l~~N~i--------~-~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~  209 (394)
T COG4886         141 NLKELDLSDNKI--------E-SLPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNNLDLSGNKISDLPPEIELLS  209 (394)
T ss_pred             hcccccccccch--------h-hhhhhhhccccccccccCCchhhh--hhhhhhhhhhhhheeccCCccccCchhhhhhh
Confidence            677888888843        3 222345566666666666666665  44444455666666666665555554433333


Q ss_pred             CCcEEEeeCC-----------------------ccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEE
Q 048040          102 GLEYLNLENS-----------------------HLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFV  158 (178)
Q Consensus       102 ~L~~L~l~~n-----------------------~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~  158 (178)
                      .|+.+.+++|                       ++...  +..++.+++++.|++++|.++..+    .++....++.++
T Consensus       210 ~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~--~~~~~~l~~l~~L~~s~n~i~~i~----~~~~~~~l~~L~  283 (394)
T COG4886         210 ALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDL--PESIGNLSNLETLDLSNNQISSIS----SLGSLTNLRELD  283 (394)
T ss_pred             hhhhhhhcCCcceecchhhhhcccccccccCCceeeec--cchhccccccceeccccccccccc----cccccCccCEEe
Confidence            3444444444                       43221  233566677888888888877765    267778888888


Q ss_pred             ecCCCCCCCCCccc
Q 048040          159 LRSCALPPINPSFI  172 (178)
Q Consensus       159 l~~n~~~~~~~~~~  172 (178)
                      +++|.+...+|...
T Consensus       284 ~s~n~~~~~~~~~~  297 (394)
T COG4886         284 LSGNSLSNALPLIA  297 (394)
T ss_pred             ccCccccccchhhh
Confidence            88887776655543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.59  E-value=1.5e-08  Score=75.45  Aligned_cols=105  Identities=29%  Similarity=0.315  Sum_probs=79.9

Q ss_pred             CCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEe
Q 048040           53 HDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLD  132 (178)
Q Consensus        53 ~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  132 (178)
                      .-|+.++|++|.|+.  +..++.-++.++.|+++.|.+..+. .++.+++|+.|++++|.+....  .+-..+.+++.|.
T Consensus       284 q~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~--Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  284 QELTELDLSGNLITQ--IDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNLLAECV--GWHLKLGNIKTLK  358 (490)
T ss_pred             hhhhhccccccchhh--hhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecccchhHhhh--hhHhhhcCEeeee
Confidence            457788888888887  5677777788888888888766553 3777888888888888875443  3345677888888


Q ss_pred             ccCCCCCCcccHHHHHhccCCCcEEEecCCCCCC
Q 048040          133 LSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPP  166 (178)
Q Consensus       133 l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~  166 (178)
                      +++|.|....    .+.++=+|..|++.+|++..
T Consensus       359 La~N~iE~LS----GL~KLYSLvnLDl~~N~Ie~  388 (490)
T KOG1259|consen  359 LAQNKIETLS----GLRKLYSLVNLDLSSNQIEE  388 (490)
T ss_pred             hhhhhHhhhh----hhHhhhhheeccccccchhh
Confidence            8888887765    56778889999999998764

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.58  E-value=3.7e-08  Score=77.43  Aligned_cols=134  Identities=27%  Similarity=0.421  Sum_probs=97.0

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCC-CCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLH-DLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRN   99 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~   99 (178)
                      ..++.+++.++        .+. .+++....+. +|+.|++++|.+..  ++..+..++.|+.|++++|.+..+|.....
T Consensus       116 ~~l~~L~l~~n--------~i~-~i~~~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~  184 (394)
T COG4886         116 TNLTSLDLDNN--------NIT-DIPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLSDLPKLLSN  184 (394)
T ss_pred             cceeEEecCCc--------ccc-cCccccccchhhcccccccccchhh--hhhhhhccccccccccCCchhhhhhhhhhh
Confidence            45888999988        555 4555555564 99999999999998  677889999999999999998888887778


Q ss_pred             CCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCccc--------------------HHHHHhccCCCcEEEe
Q 048040          100 FSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRD--------------------WFQVVAKLRSLKTFVL  159 (178)
Q Consensus       100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~--------------------~~~~~~~l~~L~~l~l  159 (178)
                      .+.|+.|++++|++...+..  .+....|+++.+++|.+...+.                    +...++.++.++.|++
T Consensus       185 ~~~L~~L~ls~N~i~~l~~~--~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~  262 (394)
T COG4886         185 LSNLNNLDLSGNKISDLPPE--IELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDL  262 (394)
T ss_pred             hhhhhheeccCCccccCchh--hhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecc
Confidence            89999999999998666532  2344557777777774222211                    0234555566666777


Q ss_pred             cCCCCCCC
Q 048040          160 RSCALPPI  167 (178)
Q Consensus       160 ~~n~~~~~  167 (178)
                      ++|.++..
T Consensus       263 s~n~i~~i  270 (394)
T COG4886         263 SNNQISSI  270 (394)
T ss_pred             cccccccc
Confidence            66666643

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.53  E-value=1.6e-07  Score=80.36  Aligned_cols=112  Identities=33%  Similarity=0.386  Sum_probs=83.3

Q ss_pred             hhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhcc
Q 048040           46 SPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHL  125 (178)
Q Consensus        46 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l  125 (178)
                      ...|..++.|++|+|++|.-... +|..++.+.+|++|++++..+..+|..+.++.+|.+|++..+...... +.....+
T Consensus       564 ~~ff~~m~~LrVLDLs~~~~l~~-LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L  641 (889)
T KOG4658|consen  564 GEFFRSLPLLRVLDLSGNSSLSK-LPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLEL  641 (889)
T ss_pred             HHHHhhCcceEEEECCCCCccCc-CChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccc-cchhhhc
Confidence            33477799999999998776555 899999999999999999988899999999999999999877642222 3445668


Q ss_pred             CCCCEEeccCCCCCCcccHHHHHhccCCCcEEEe
Q 048040          126 SSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVL  159 (178)
Q Consensus       126 ~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l  159 (178)
                      .+|++|.+..............+..++.|+.+.+
T Consensus       642 ~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  642 QSLRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             ccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            8999999988774443322344555556655555

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.52  E-value=1.5e-07  Score=78.51  Aligned_cols=138  Identities=20%  Similarity=0.259  Sum_probs=95.5

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhC-CCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLK-LHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRN   99 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~-l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~   99 (178)
                      ..+++||++|..       .+....|..++. ++.|+.|.+.+-.+...+...-..++++|..||+++..+..+ .+++.
T Consensus       122 ~nL~~LdI~G~~-------~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~  193 (699)
T KOG3665|consen  122 QNLQHLDISGSE-------LFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISR  193 (699)
T ss_pred             HhhhhcCccccc-------hhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhc
Confidence            456777777763       344445554443 688888888887775533445566888888888888766655 67778


Q ss_pred             CCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcc----cHHHHHhccCCCcEEEecCCCCCC
Q 048040          100 FSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSR----DWFQVVAKLRSLKTFVLRSCALPP  166 (178)
Q Consensus       100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~----~~~~~~~~l~~L~~l~l~~n~~~~  166 (178)
                      +++|+.|.+.+-.+........+-++++|++||+|.......+    .+.+.-..+|.|+.||++++.+..
T Consensus       194 LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  194 LKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             cccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            8888888888777766555566778888888888887655443    123333467788888888776654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.52  E-value=4.3e-07  Score=68.67  Aligned_cols=145  Identities=22%  Similarity=0.225  Sum_probs=88.5

Q ss_pred             CCeeEEEecCCccc-----------------------ccccccccccchh-------hhhCCCCCCEEEccCCCCCCCCc
Q 048040           21 GHVKVLNLRTSDYE-----------------------FARRKFLKGTISP-------ALLKLHDLRHLDLSNNDFGGSPI   70 (178)
Q Consensus        21 ~~l~~l~l~~~~~~-----------------------~~~~~~l~~~~~~-------~l~~l~~L~~L~l~~n~~~~~~~   70 (178)
                      ..++.++|++|.+.                       ++-..+...++|.       .+...++|+.++|+.|-+....+
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~  109 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI  109 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence            56788888888872                       1122223334444       34455689999999998875412


Q ss_pred             ---hhhhcccCCCcEEeccCCCCCccc--------------hhccCCCCCcEEEeeCCccccCCch---HHHhccCCCCE
Q 048040           71 ---PEFIGSLSKLRYLNLSCGAPLEVP--------------RTLRNFSGLEYLNLENSHLFSVGSL---EWLSHLSSLRH  130 (178)
Q Consensus        71 ---~~~l~~l~~L~~L~l~~~~~~~~~--------------~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~  130 (178)
                         -..+.+.+.|++|.+.+|.++...              .....-++|+++..++|++...+..   ..+...+.|+.
T Consensus       110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~lee  189 (382)
T KOG1909|consen  110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEE  189 (382)
T ss_pred             HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccce
Confidence               234567788999999888555321              1123446788888888887444322   22445566677


Q ss_pred             EeccCCCCCCcc--cHHHHHhccCCCcEEEecCCCCC
Q 048040          131 LDLSYINLTKSR--DWFQVVAKLRSLKTFVLRSCALP  165 (178)
Q Consensus       131 L~l~~n~i~~~~--~~~~~~~~l~~L~~l~l~~n~~~  165 (178)
                      +.+..|.|....  .....+..++.|++|++++|.++
T Consensus       190 vr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft  226 (382)
T KOG1909|consen  190 VRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT  226 (382)
T ss_pred             EEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence            777776664331  23445566666777777666655

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.50  E-value=2.6e-07  Score=69.81  Aligned_cols=142  Identities=20%  Similarity=0.172  Sum_probs=98.2

Q ss_pred             CCCeeEEEecCCcccccccccccccchh----hhhCCCCCCEEEccCCCCCCCCchhh-------------hcccCCCcE
Q 048040           20 TGHVKVLNLRTSDYEFARRKFLKGTISP----ALLKLHDLRHLDLSNNDFGGSPIPEF-------------IGSLSKLRY   82 (178)
Q Consensus        20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~----~l~~l~~L~~L~l~~n~~~~~~~~~~-------------l~~l~~L~~   82 (178)
                      +++++.+|||.|        .|...-++    .+.....|+.|+|.+|++... -...             ..+-+.|++
T Consensus        91 ~~~L~~ldLSDN--------A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~-ag~~l~~al~~l~~~kk~~~~~~Lrv  161 (382)
T KOG1909|consen   91 CPKLQKLDLSDN--------AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPE-AGGRLGRALFELAVNKKAASKPKLRV  161 (382)
T ss_pred             CCceeEeecccc--------ccCccchHHHHHHHHhccCHHHHhhhcCCCChh-HHHHHHHHHHHHHHHhccCCCcceEE
Confidence            358999999999        55543333    345577888889999988742 1122             234567888


Q ss_pred             EeccCCCCCccc-----hhccCCCCCcEEEeeCCccccCCc---hHHHhccCCCCEEeccCCCCCCc--ccHHHHHhccC
Q 048040           83 LNLSCGAPLEVP-----RTLRNFSGLEYLNLENSHLFSVGS---LEWLSHLSSLRHLDLSYINLTKS--RDWFQVVAKLR  152 (178)
Q Consensus        83 L~l~~~~~~~~~-----~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~i~~~--~~~~~~~~~l~  152 (178)
                      +....|.+...+     ..+...+.|+.+.+..|.+-....   ...+..+++|+.||++.|.|+..  ..++..+..++
T Consensus       162 ~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~  241 (382)
T KOG1909|consen  162 FICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP  241 (382)
T ss_pred             EEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc
Confidence            888888655433     356677888888888888744432   23367788889999998888766  23456667778


Q ss_pred             CCcEEEecCCCCCCCCCc
Q 048040          153 SLKTFVLRSCALPPINPS  170 (178)
Q Consensus       153 ~L~~l~l~~n~~~~~~~~  170 (178)
                      .|+++++++|.+......
T Consensus       242 ~L~El~l~dcll~~~Ga~  259 (382)
T KOG1909|consen  242 HLRELNLGDCLLENEGAI  259 (382)
T ss_pred             hheeecccccccccccHH
Confidence            888888888887754443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=1.4e-07  Score=73.23  Aligned_cols=119  Identities=22%  Similarity=0.226  Sum_probs=87.0

Q ss_pred             hhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccc--hhccCCCCCcEEEeeCCccccCCchHH--
Q 048040           46 SPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVP--RTLRNFSGLEYLNLENSHLFSVGSLEW--  121 (178)
Q Consensus        46 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~--  121 (178)
                      -..+..++.|..|+|++|....+ ......-+..|+.|+|++|.+-..+  .....++.|..|+++.+.+.+...+..  
T Consensus       215 ~~~~~~fPsl~~L~L~~N~~~~~-~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s  293 (505)
T KOG3207|consen  215 QWILLTFPSLEVLYLEANEIILI-KATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVES  293 (505)
T ss_pred             HHHHHhCCcHHHhhhhcccccce-ecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccc
Confidence            34456789999999999953221 2222334567889999998544444  466788999999999999866654432  


Q ss_pred             ---HhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCC
Q 048040          122 ---LSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPP  166 (178)
Q Consensus       122 ---~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~  166 (178)
                         ...+++|+.|++..|+|.+.+. ...+..+++|+++.+..|.+..
T Consensus       294 ~~kt~~f~kL~~L~i~~N~I~~w~s-l~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  294 LDKTHTFPKLEYLNISENNIRDWRS-LNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             hhhhcccccceeeecccCccccccc-cchhhccchhhhhhcccccccc
Confidence               3567899999999999987764 5567777888888888887764

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.30  E-value=1.1e-06  Score=47.02  Aligned_cols=36  Identities=28%  Similarity=0.361  Sum_probs=22.9

Q ss_pred             CCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCC
Q 048040          127 SLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALP  165 (178)
Q Consensus       127 ~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~  165 (178)
                      +|++|++++|.|++.+.   .++++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~~l~~---~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPP---ELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SSHGG---HGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcccCc---hHhCCCCCCEEEecCCCCC
Confidence            56677777777766653   4667777777777777666

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.25  E-value=1.6e-07  Score=62.33  Aligned_cols=90  Identities=26%  Similarity=0.266  Sum_probs=58.7

Q ss_pred             hhCCCCCCEEEccCCCCCCCCchhhhc-ccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCC
Q 048040           49 LLKLHDLRHLDLSNNDFGGSPIPEFIG-SLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSS  127 (178)
Q Consensus        49 l~~l~~L~~L~l~~n~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  127 (178)
                      +.....|...++++|.+..  .|+.|. ..+.++.+++.+|.+..+|+.+..++.|+.++++.|.+...  ++.+..+.+
T Consensus        49 l~~~~el~~i~ls~N~fk~--fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~--p~vi~~L~~  124 (177)
T KOG4579|consen   49 LSKGYELTKISLSDNGFKK--FPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAE--PRVIAPLIK  124 (177)
T ss_pred             HhCCceEEEEecccchhhh--CCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccc--hHHHHHHHh
Confidence            3344455556777777776  444443 34467777777777777777777777777777777776333  344555777


Q ss_pred             CCEEeccCCCCCCcc
Q 048040          128 LRHLDLSYINLTKSR  142 (178)
Q Consensus       128 L~~L~l~~n~i~~~~  142 (178)
                      +..|+..+|.+...+
T Consensus       125 l~~Lds~~na~~eid  139 (177)
T KOG4579|consen  125 LDMLDSPENARAEID  139 (177)
T ss_pred             HHHhcCCCCccccCc
Confidence            777777777766654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=2.4e-07  Score=69.01  Aligned_cols=148  Identities=26%  Similarity=0.267  Sum_probs=94.2

Q ss_pred             CCeeEEEecCCccc-----------------ccccccccccchhhhhCCCCCCEEEccCCC-CCCCCchhhhcccCCCcE
Q 048040           21 GHVKVLNLRTSDYE-----------------FARRKFLKGTISPALLKLHDLRHLDLSNND-FGGSPIPEFIGSLSKLRY   82 (178)
Q Consensus        21 ~~l~~l~l~~~~~~-----------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~l~~l~~L~~   82 (178)
                      .+++.+||+...++                 .+.++.+...+-..+....+|+.++++++. ++.....-.+.+++.|..
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            45788888888763                 344555666666667777888888888854 554324455677788888


Q ss_pred             EeccCCCCCc--cchhccCC-CCCcEEEeeCCcc--ccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEE
Q 048040           83 LNLSCGAPLE--VPRTLRNF-SGLEYLNLENSHL--FSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTF  157 (178)
Q Consensus        83 L~l~~~~~~~--~~~~~~~l-~~L~~L~l~~n~l--~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l  157 (178)
                      |++++|.+..  +...+... ++|..|++++++-  ..........+++.|.+||++.+.--.. .....+.+++.|+++
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~l  343 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHL  343 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc-hHHHHHHhcchheee
Confidence            8888884332  12222222 4677777777762  1122233357788899999988763222 346778888899988


Q ss_pred             EecCCCCCCCCCcc
Q 048040          158 VLRSCALPPINPSF  171 (178)
Q Consensus       158 ~l~~n~~~~~~~~~  171 (178)
                      .++.|.  +++|..
T Consensus       344 SlsRCY--~i~p~~  355 (419)
T KOG2120|consen  344 SLSRCY--DIIPET  355 (419)
T ss_pred             ehhhhc--CCChHH
Confidence            887664  345554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.22  E-value=2.6e-06  Score=73.07  Aligned_cols=137  Identities=26%  Similarity=0.372  Sum_probs=94.6

Q ss_pred             CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCC-CCCccchhcc
Q 048040           20 TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCG-APLEVPRTLR   98 (178)
Q Consensus        20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~   98 (178)
                      -+.+..||+++|        .--+.+|..++++.+|+.|++++..++.  +|..+..+..|.+|++..+ ....+|....
T Consensus       570 m~~LrVLDLs~~--------~~l~~LP~~I~~Li~LryL~L~~t~I~~--LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~  639 (889)
T KOG4658|consen  570 LPLLRVLDLSGN--------SSLSKLPSSIGELVHLRYLDLSDTGISH--LPSGLGNLKKLIYLNLEVTGRLESIPGILL  639 (889)
T ss_pred             CcceEEEECCCC--------CccCcCChHHhhhhhhhcccccCCCccc--cchHHHHHHhhheeccccccccccccchhh
Confidence            356777888876        6667899999999999999999999997  8999999999999999987 4555555666


Q ss_pred             CCCCCcEEEeeCCcc-ccCCchHHHhccCCCCEEeccCCCC-----------------------CCcccHHHHHhccCCC
Q 048040           99 NFSGLEYLNLENSHL-FSVGSLEWLSHLSSLRHLDLSYINL-----------------------TKSRDWFQVVAKLRSL  154 (178)
Q Consensus        99 ~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~i-----------------------~~~~~~~~~~~~l~~L  154 (178)
                      .+++|++|.+..... .+......+..+..|+.+.......                       ...+.....+..+.+|
T Consensus       640 ~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L  719 (889)
T KOG4658|consen  640 ELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNL  719 (889)
T ss_pred             hcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCc
Confidence            799999999987652 1112223344444444444433222                       0111113345566677


Q ss_pred             cEEEecCCCCCC
Q 048040          155 KTFVLRSCALPP  166 (178)
Q Consensus       155 ~~l~l~~n~~~~  166 (178)
                      +.|.+.++.++.
T Consensus       720 ~~L~i~~~~~~e  731 (889)
T KOG4658|consen  720 EELSILDCGISE  731 (889)
T ss_pred             ceEEEEcCCCch
Confidence            777777777654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.18  E-value=2.3e-06  Score=60.36  Aligned_cols=87  Identities=30%  Similarity=0.317  Sum_probs=56.6

Q ss_pred             hhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccc--hhccCCCCCcEEEeeCCccccCCchH--HHhc
Q 048040           49 LLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVP--RTLRNFSGLEYLNLENSHLFSVGSLE--WLSH  124 (178)
Q Consensus        49 l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~~  124 (178)
                      |..+..|.+|.+..|.|+.+ -|.--..+++|..|.+.+|.+..+.  ..+..+++|+.|.+-+|++....-..  .+..
T Consensus        60 lp~l~rL~tLll~nNrIt~I-~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~k  138 (233)
T KOG1644|consen   60 LPHLPRLHTLLLNNNRITRI-DPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYK  138 (233)
T ss_pred             CCCccccceEEecCCcceee-ccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEe
Confidence            55677788888888888774 3444445566777887777655543  24566777888888777764443221  1466


Q ss_pred             cCCCCEEeccCC
Q 048040          125 LSSLRHLDLSYI  136 (178)
Q Consensus       125 l~~L~~L~l~~n  136 (178)
                      +++|++||+..-
T Consensus       139 lp~l~~LDF~kV  150 (233)
T KOG1644|consen  139 LPSLRTLDFQKV  150 (233)
T ss_pred             cCcceEeehhhh
Confidence            777888877654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.16  E-value=6.2e-07  Score=71.11  Aligned_cols=109  Identities=30%  Similarity=0.412  Sum_probs=65.6

Q ss_pred             hhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCC
Q 048040           49 LLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSL  128 (178)
Q Consensus        49 l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  128 (178)
                      +..+.+|..+++..|.+..  +...+..+++|++|++++|.++.+ ..+..++.|+.|++.+|.+.....   +..++.|
T Consensus        91 l~~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~i~~~~~---~~~l~~L  164 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNLISDISG---LESLKSL  164 (414)
T ss_pred             cccccceeeeeccccchhh--cccchhhhhcchheeccccccccc-cchhhccchhhheeccCcchhccC---Cccchhh
Confidence            4556677777777777765  333355666777777777765544 234455557777777777654432   3446667


Q ss_pred             CEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCC
Q 048040          129 RHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALP  165 (178)
Q Consensus       129 ~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~  165 (178)
                      +.+++++|.+...... . ...+.+++.+.+.+|.+.
T Consensus       165 ~~l~l~~n~i~~ie~~-~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  165 KLLDLSYNRIVDIEND-E-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             hcccCCcchhhhhhhh-h-hhhccchHHHhccCCchh
Confidence            7777777776665420 1 355666666666666555

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.13  E-value=1.6e-06  Score=64.72  Aligned_cols=150  Identities=18%  Similarity=0.183  Sum_probs=97.7

Q ss_pred             eeeeeeecCC-CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCC
Q 048040           10 KWRGVHCRNT-TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCG   88 (178)
Q Consensus        10 ~~~~~~~~~~-~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~   88 (178)
                      .|..+.|.-. -++++.|++++|        .+...+-..=....+|++|-|.+..+........+..++.++.+.++.|
T Consensus        85 dWseI~~ile~lP~l~~LNls~N--------~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen   85 DWSEIGAILEQLPALTTLNLSCN--------SLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             cHHHHHHHHhcCccceEeeccCC--------cCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence            4666665532 267777777777        4443332111356677888888877776434455667777777766665


Q ss_pred             CCCcc----------chh-------------c-------cCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCC
Q 048040           89 APLEV----------PRT-------------L-------RNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINL  138 (178)
Q Consensus        89 ~~~~~----------~~~-------------~-------~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i  138 (178)
                      ..+++          ...             +       .-++++..+.+..|++++...-.....++.+--|.++.|.|
T Consensus       157 ~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~i  236 (418)
T KOG2982|consen  157 SLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNI  236 (418)
T ss_pred             hhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhccccc
Confidence            32211          000             0       11577888888888776665444456677777888888888


Q ss_pred             CCcccHHHHHhccCCCcEEEecCCCCCCCC
Q 048040          139 TKSRDWFQVVAKLRSLKTFVLRSCALPPIN  168 (178)
Q Consensus       139 ~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  168 (178)
                      ..... .+.+.+++.|+.|.+.++++....
T Consensus       237 dswas-vD~Ln~f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  237 DSWAS-VDALNGFPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             ccHHH-HHHHcCCchhheeeccCCcccccc
Confidence            77754 678899999999999999887543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.13  E-value=2.2e-06  Score=60.45  Aligned_cols=107  Identities=24%  Similarity=0.333  Sum_probs=84.8

Q ss_pred             CCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhc-cCCCCCcEEEeeCCccccCCchHHHhccCCCCE
Q 048040           52 LHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTL-RNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRH  130 (178)
Q Consensus        52 l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  130 (178)
                      ..+...++|+.|.+..   .+.|+.++.|.+|.+++|.+..+.+.+ ..+++|..|.+.+|++........+..+++|+.
T Consensus        41 ~d~~d~iDLtdNdl~~---l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRK---LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY  117 (233)
T ss_pred             ccccceecccccchhh---cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence            4567888999999975   345778899999999999777764444 456889999999999877776666889999999


Q ss_pred             EeccCCCCCCcccH-HHHHhccCCCcEEEecC
Q 048040          131 LDLSYINLTKSRDW-FQVVAKLRSLKTFVLRS  161 (178)
Q Consensus       131 L~l~~n~i~~~~~~-~~~~~~l~~L~~l~l~~  161 (178)
                      |.+-+|.++....+ ...+..+++|+.||.+.
T Consensus       118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             eeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            99999998876431 23567889999998765

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.11  E-value=6.9e-06  Score=43.92  Aligned_cols=32  Identities=44%  Similarity=0.611  Sum_probs=12.4

Q ss_pred             CCEEEccCCCCCCCCchhhhcccCCCcEEeccCC
Q 048040           55 LRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCG   88 (178)
Q Consensus        55 L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~   88 (178)
                      |++|++++|.++.  +|..+..+++|+.|++++|
T Consensus         3 L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    3 LEELDLSNNQITD--LPPELSNLPNLETLNLSNN   34 (44)
T ss_dssp             -SEEEETSSS-SS--HGGHGTTCTTSSEEEETSS
T ss_pred             ceEEEccCCCCcc--cCchHhCCCCCCEEEecCC
Confidence            3444444444443  3333444444444444444

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.10  E-value=1.4e-07  Score=77.64  Aligned_cols=109  Identities=32%  Similarity=0.273  Sum_probs=87.6

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNF  100 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l  100 (178)
                      +.++.|||++|        +++..-  .+..+.+|++|++++|.+..  +|..-..-..|+.|.+++|.++.+ .++.++
T Consensus       187 ~ale~LnLshN--------k~~~v~--~Lr~l~~LkhLDlsyN~L~~--vp~l~~~gc~L~~L~lrnN~l~tL-~gie~L  253 (1096)
T KOG1859|consen  187 PALESLNLSHN--------KFTKVD--NLRRLPKLKHLDLSYNCLRH--VPQLSMVGCKLQLLNLRNNALTTL-RGIENL  253 (1096)
T ss_pred             HHhhhhccchh--------hhhhhH--HHHhcccccccccccchhcc--ccccchhhhhheeeeecccHHHhh-hhHHhh
Confidence            66789999999        676543  68899999999999999998  444332233499999999966654 466788


Q ss_pred             CCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcc
Q 048040          101 SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSR  142 (178)
Q Consensus       101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~  142 (178)
                      .+|+.|++++|-+.+..-...+..+..|+.|+|.||.+...|
T Consensus       254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            999999999999877666666888889999999999998775

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.05  E-value=7.5e-07  Score=70.65  Aligned_cols=111  Identities=24%  Similarity=0.284  Sum_probs=90.3

Q ss_pred             hCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCC
Q 048040           50 LKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLR  129 (178)
Q Consensus        50 ~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  129 (178)
                      ..+..+..+.+..|.+..  .-..+..+.+|..+++.+|.+..+...+..+++|++|++++|.+.....   +..++.|+
T Consensus        69 ~~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~---l~~l~~L~  143 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG---LSTLTLLK  143 (414)
T ss_pred             HHhHhHHhhccchhhhhh--hhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc---hhhccchh
Confidence            355667777788888876  3455788899999999999887775557789999999999999866643   67777899


Q ss_pred             EEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCC
Q 048040          130 HLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINP  169 (178)
Q Consensus       130 ~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  169 (178)
                      .|++.+|.|+...    .+..++.|+.+++++|.+..+-+
T Consensus       144 ~L~l~~N~i~~~~----~~~~l~~L~~l~l~~n~i~~ie~  179 (414)
T KOG0531|consen  144 ELNLSGNLISDIS----GLESLKSLKLLDLSYNRIVDIEN  179 (414)
T ss_pred             hheeccCcchhcc----CCccchhhhcccCCcchhhhhhh
Confidence            9999999999986    44558999999999999986555

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.01  E-value=7.3e-07  Score=59.29  Aligned_cols=88  Identities=20%  Similarity=0.280  Sum_probs=73.7

Q ss_pred             CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccC
Q 048040           20 TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRN   99 (178)
Q Consensus        20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~   99 (178)
                      .-+++.+++++|        .|....+..-..++.+++++|+.|.+++  +|..+..++.|+.+++++|.+...|+.+..
T Consensus        52 ~~el~~i~ls~N--------~fk~fp~kft~kf~t~t~lNl~~neisd--vPeE~Aam~aLr~lNl~~N~l~~~p~vi~~  121 (177)
T KOG4579|consen   52 GYELTKISLSDN--------GFKKFPKKFTIKFPTATTLNLANNEISD--VPEELAAMPALRSLNLRFNPLNAEPRVIAP  121 (177)
T ss_pred             CceEEEEecccc--------hhhhCCHHHhhccchhhhhhcchhhhhh--chHHHhhhHHhhhcccccCccccchHHHHH
Confidence            456777888888        7775555555567789999999999998  788899999999999999988888888888


Q ss_pred             CCCCcEEEeeCCccccCC
Q 048040          100 FSGLEYLNLENSHLFSVG  117 (178)
Q Consensus       100 l~~L~~L~l~~n~l~~~~  117 (178)
                      +.++..|+..+|....++
T Consensus       122 L~~l~~Lds~~na~~eid  139 (177)
T KOG4579|consen  122 LIKLDMLDSPENARAEID  139 (177)
T ss_pred             HHhHHHhcCCCCccccCc
Confidence            999999999999876554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.91  E-value=0.00014  Score=53.94  Aligned_cols=118  Identities=22%  Similarity=0.249  Sum_probs=77.9

Q ss_pred             hhhhCCCCCCEEEccCCCCCCCCch----hhhcccCCCcEEeccCCCCCccc-----h---------hccCCCCCcEEEe
Q 048040           47 PALLKLHDLRHLDLSNNDFGGSPIP----EFIGSLSKLRYLNLSCGAPLEVP-----R---------TLRNFSGLEYLNL  108 (178)
Q Consensus        47 ~~l~~l~~L~~L~l~~n~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~-----~---------~~~~l~~L~~L~l  108 (178)
                      +.+...++|+..+|+.|-+... .|    ..+.+.+.|.+|.+++|..+.+.     .         ....-|.|+++.+
T Consensus        86 ~aLlkcp~l~~v~LSDNAfg~~-~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vic  164 (388)
T COG5238          86 KALLKCPRLQKVDLSDNAFGSE-FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC  164 (388)
T ss_pred             HHHhcCCcceeeeccccccCcc-cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence            3456778999999999998764 33    45677788999999998665431     1         1234578999999


Q ss_pred             eCCccccCCchHH---HhccCCCCEEeccCCCCCCcc-c--HHHHHhccCCCcEEEecCCCCC
Q 048040          109 ENSHLFSVGSLEW---LSHLSSLRHLDLSYINLTKSR-D--WFQVVAKLRSLKTFVLRSCALP  165 (178)
Q Consensus       109 ~~n~l~~~~~~~~---~~~l~~L~~L~l~~n~i~~~~-~--~~~~~~~l~~L~~l~l~~n~~~  165 (178)
                      ++|++...+....   +..-..|+++.+..|.|.... .  ....+..+.+|++|++++|-++
T Consensus       165 grNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft  227 (388)
T COG5238         165 GRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             ccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence            9999855543211   222246777778888775441 1  1123345667788888887766

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.88  E-value=7.2e-05  Score=55.45  Aligned_cols=141  Identities=18%  Similarity=0.188  Sum_probs=99.8

Q ss_pred             CCCeeEEEecCCcccccccccccccchh----hhhCCCCCCEEEccCCCCCCCCchhh-------------hcccCCCcE
Q 048040           20 TGHVKVLNLRTSDYEFARRKFLKGTISP----ALLKLHDLRHLDLSNNDFGGSPIPEF-------------IGSLSKLRY   82 (178)
Q Consensus        20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~----~l~~l~~L~~L~l~~n~~~~~~~~~~-------------l~~l~~L~~   82 (178)
                      +++++.++||.|        .|....|.    .++.-..|.+|.|++|++... -...             ..+-+.|+.
T Consensus        91 cp~l~~v~LSDN--------Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~-aG~rigkal~~la~nKKaa~kp~Le~  161 (388)
T COG5238          91 CPRLQKVDLSDN--------AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPI-AGGRIGKALFHLAYNKKAADKPKLEV  161 (388)
T ss_pred             CCcceeeecccc--------ccCcccchHHHHHHhcCCCceeEEeecCCCCcc-chhHHHHHHHHHHHHhhhccCCCceE
Confidence            478899999999        66665554    456678899999999998753 2222             234577888


Q ss_pred             EeccCCCCCccch-----hccCCCCCcEEEeeCCccccCCch--HH--HhccCCCCEEeccCCCCCCcc--cHHHHHhcc
Q 048040           83 LNLSCGAPLEVPR-----TLRNFSGLEYLNLENSHLFSVGSL--EW--LSHLSSLRHLDLSYINLTKSR--DWFQVVAKL  151 (178)
Q Consensus        83 L~l~~~~~~~~~~-----~~~~l~~L~~L~l~~n~l~~~~~~--~~--~~~l~~L~~L~l~~n~i~~~~--~~~~~~~~l  151 (178)
                      +....|.+...+.     .+..-..|+.+.+..|.+...+..  .+  ..-+.+|++||+..|-++...  .++..+..+
T Consensus       162 vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W  241 (388)
T COG5238         162 VICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEW  241 (388)
T ss_pred             EEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhccc
Confidence            8888886554443     233446899999999988444321  11  344578999999999998773  235566677


Q ss_pred             CCCcEEEecCCCCCCCCC
Q 048040          152 RSLKTFVLRSCALPPINP  169 (178)
Q Consensus       152 ~~L~~l~l~~n~~~~~~~  169 (178)
                      +.|++|.+.+|.++....
T Consensus       242 ~~lrEL~lnDClls~~G~  259 (388)
T COG5238         242 NLLRELRLNDCLLSNEGV  259 (388)
T ss_pred             chhhhccccchhhccccH
Confidence            788999999988875443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.86  E-value=1.4e-05  Score=67.04  Aligned_cols=109  Identities=19%  Similarity=0.283  Sum_probs=82.3

Q ss_pred             CCCCEEEccCCCCCCCCchhh-hcccCCCcEEeccCC-C-CCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCC
Q 048040           53 HDLRHLDLSNNDFGGSPIPEF-IGSLSKLRYLNLSCG-A-PLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLR  129 (178)
Q Consensus        53 ~~L~~L~l~~n~~~~~~~~~~-l~~l~~L~~L~l~~~-~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  129 (178)
                      .+|+.|+++|...-....+.. -..+|+|+.|.+.+- . ...+.+...++++|..||+++.++...   .-++.+++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHH
Confidence            578999999876543224544 457899999999875 2 223344556889999999999998655   3488899999


Q ss_pred             EEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCC
Q 048040          130 HLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALP  165 (178)
Q Consensus       130 ~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~  165 (178)
                      +|.+++-.+..... ...+-.+++|++||++..+..
T Consensus       199 ~L~mrnLe~e~~~~-l~~LF~L~~L~vLDIS~~~~~  233 (699)
T KOG3665|consen  199 VLSMRNLEFESYQD-LIDLFNLKKLRVLDISRDKNN  233 (699)
T ss_pred             HHhccCCCCCchhh-HHHHhcccCCCeeeccccccc
Confidence            99999988877654 456778999999999986654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.80  E-value=1.2e-05  Score=58.80  Aligned_cols=112  Identities=24%  Similarity=0.231  Sum_probs=74.2

Q ss_pred             cchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCC---ccchhccCCCCCcEEEeeCCccccCCchH
Q 048040           44 TISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPL---EVPRTLRNFSGLEYLNLENSHLFSVGSLE  120 (178)
Q Consensus        44 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  120 (178)
                      .+......+..|+.+.+.+..++.   ...+..|++|+.|.++.|..+   .++...-.+++|+++++++|+++......
T Consensus        34 ~~~gl~d~~~~le~ls~~n~gltt---~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~  110 (260)
T KOG2739|consen   34 KLGGLTDEFVELELLSVINVGLTT---LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR  110 (260)
T ss_pred             Ccccccccccchhhhhhhccceee---cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc
Confidence            344444556667777777777764   234667888999999888222   23334445689999999999986554444


Q ss_pred             HHhccCCCCEEeccCCCCCCcccH-HHHHhccCCCcEEE
Q 048040          121 WLSHLSSLRHLDLSYINLTKSRDW-FQVVAKLRSLKTFV  158 (178)
Q Consensus       121 ~~~~l~~L~~L~l~~n~i~~~~~~-~~~~~~l~~L~~l~  158 (178)
                      ....+.+|..|++..+..+...+. -..+.-+++|.+++
T Consensus       111 pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  111 PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            567777888999999887776322 33444556666655

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.71  E-value=0.00014  Score=57.23  Aligned_cols=60  Identities=13%  Similarity=0.179  Sum_probs=32.3

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCC-CCCccch
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCG-APLEVPR   95 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~   95 (178)
                      ..++.|++++|        .+.. +|   .-..+|+.|.+++|.--.. +|..+.  .+|+.|.+++| .+..+|.
T Consensus        52 ~~l~~L~Is~c--------~L~s-LP---~LP~sLtsL~Lsnc~nLts-LP~~LP--~nLe~L~Ls~Cs~L~sLP~  112 (426)
T PRK15386         52 RASGRLYIKDC--------DIES-LP---VLPNELTEITIENCNNLTT-LPGSIP--EGLEKLTVCHCPEISGLPE  112 (426)
T ss_pred             cCCCEEEeCCC--------CCcc-cC---CCCCCCcEEEccCCCCccc-CCchhh--hhhhheEccCccccccccc
Confidence            45667777777        3331 22   1123577777766443222 454442  46777777776 5554543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.62  E-value=9.2e-06  Score=60.77  Aligned_cols=139  Identities=19%  Similarity=0.139  Sum_probs=82.2

Q ss_pred             ecCCCCCeeEEEecCCcccccccccccccc-hhhhhCCCCCCEEEccCCCCCCCCchhhhccc-CCCcEEeccCC--CCC
Q 048040           16 CRNTTGHVKVLNLRTSDYEFARRKFLKGTI-SPALLKLHDLRHLDLSNNDFGGSPIPEFIGSL-SKLRYLNLSCG--APL   91 (178)
Q Consensus        16 ~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l-~~L~~L~l~~~--~~~   91 (178)
                      |......+++++++.+.       +++..- .-.++..+.|..|+++.|.+....+...+... +.|..|+++|+  .++
T Consensus       229 ~iAkN~~L~~lnlsm~s-------G~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~  301 (419)
T KOG2120|consen  229 TIAKNSNLVRLNLSMCS-------GFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQ  301 (419)
T ss_pred             HHhccccceeecccccc-------ccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhh
Confidence            44556788889998873       555432 33567788888888888887642122222111 34666777765  111


Q ss_pred             --ccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCC
Q 048040           92 --EVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSC  162 (178)
Q Consensus        92 --~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n  162 (178)
                        ++..-...++++.+|+++.|..........+.+++.|++|+++.+..-. |...-.+...+.|.+|++.++
T Consensus       302 ~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~-p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  302 KSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII-PETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC-hHHeeeeccCcceEEEEeccc
Confidence              2222334667777777777775444555566777777777777665322 211224456667777776553

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.40  E-value=0.00014  Score=53.21  Aligned_cols=117  Identities=25%  Similarity=0.291  Sum_probs=74.9

Q ss_pred             ecCCCCCeeEEEecCCcccccccc--cccccchhhhhCCCCCCEEEccCC--CCCCCCchhhhcccCCCcEEeccCCCCC
Q 048040           16 CRNTTGHVKVLNLRTSDYEFARRK--FLKGTISPALLKLHDLRHLDLSNN--DFGGSPIPEFIGSLSKLRYLNLSCGAPL   91 (178)
Q Consensus        16 ~~~~~~~l~~l~l~~~~~~~~~~~--~l~~~~~~~l~~l~~L~~L~l~~n--~~~~~~~~~~l~~l~~L~~L~l~~~~~~   91 (178)
                      |....+.+..+.-.+..++.++..  .++.  -..+..+++|+.|.++.|  .++.. +......+++|+++.+++|.++
T Consensus        28 ~~s~~g~~~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~-l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   28 ARSGAGKLGGLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGG-LEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             hhhcCCCcccccccccchhhhhhhccceee--cccCCCcchhhhhcccCCccccccc-ceehhhhCCceeEEeecCCccc
Confidence            333334455555555444332211  2221  123567889999999999  55554 6666667799999999999766


Q ss_pred             cc--chhccCCCCCcEEEeeCCccccCCchH--HHhccCCCCEEeccC
Q 048040           92 EV--PRTLRNFSGLEYLNLENSHLFSVGSLE--WLSHLSSLRHLDLSY  135 (178)
Q Consensus        92 ~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~~l~~L~~L~l~~  135 (178)
                      .+  -..+..+.+|..|++..|..+.....+  .+.-+++|++|+-..
T Consensus       105 ~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  105 DLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             cccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            53  234566778889999998876554432  356678888877554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.36  E-value=0.00012  Score=54.93  Aligned_cols=87  Identities=26%  Similarity=0.312  Sum_probs=56.1

Q ss_pred             CCCCCCEEEccCCCCCCC-CchhhhcccCCCcEEeccCCCCCccchhc-cCCCCCcEEEeeCCccccCCchHHHhccCCC
Q 048040           51 KLHDLRHLDLSNNDFGGS-PIPEFIGSLSKLRYLNLSCGAPLEVPRTL-RNFSGLEYLNLENSHLFSVGSLEWLSHLSSL  128 (178)
Q Consensus        51 ~l~~L~~L~l~~n~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  128 (178)
                      ....++.++|.+|.|++. ++...+.+|+.|++|+++.|.+....... ..+.+|++|.+.+..+.-.........+|++
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            345678888888888762 24456678888888888887544322222 3556778877777665222233446667778


Q ss_pred             CEEeccCCC
Q 048040          129 RHLDLSYIN  137 (178)
Q Consensus       129 ~~L~l~~n~  137 (178)
                      ++|+++.|.
T Consensus       149 telHmS~N~  157 (418)
T KOG2982|consen  149 TELHMSDNS  157 (418)
T ss_pred             hhhhhccch
Confidence            888888774

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.27  E-value=3e-05  Score=57.61  Aligned_cols=84  Identities=24%  Similarity=0.281  Sum_probs=48.4

Q ss_pred             CCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCE
Q 048040           51 KLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRH  130 (178)
Q Consensus        51 ~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  130 (178)
                      .+.+.+.|+.=||++.++   .....|+.|+.|.|+-|.+..+ ..+..+++|+.|++..|.+.+..-...+.++++|+.
T Consensus        17 dl~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            345556666666666653   2334566666666666655443 234455666666666666655544455666666666


Q ss_pred             EeccCCCC
Q 048040          131 LDLSYINL  138 (178)
Q Consensus       131 L~l~~n~i  138 (178)
                      |.+..|.=
T Consensus        93 LWL~ENPC  100 (388)
T KOG2123|consen   93 LWLDENPC  100 (388)
T ss_pred             HhhccCCc
Confidence            66666653

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.19  E-value=0.0042  Score=49.12  Aligned_cols=55  Identities=16%  Similarity=0.264  Sum_probs=24.7

Q ss_pred             hCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCC-CCCccchhccCCCCCcEEEeeCC
Q 048040           50 LKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCG-APLEVPRTLRNFSGLEYLNLENS  111 (178)
Q Consensus        50 ~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~l~~L~~L~l~~n  111 (178)
                      ....++..|++++|.++.  +| .+  ..+|+.|.+++| .+..+|..+  ..+|+.|.+.+|
T Consensus        49 ~~~~~l~~L~Is~c~L~s--LP-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         49 EEARASGRLYIKDCDIES--LP-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             HHhcCCCEEEeCCCCCcc--cC-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            334555555555555544  33 11  123555555554 333333322  124555555544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.99  E-value=5.6e-05  Score=56.16  Aligned_cols=81  Identities=23%  Similarity=0.231  Sum_probs=54.6

Q ss_pred             hhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch--hccCCCCCcEEEeeCCccccCCch----HHH
Q 048040           49 LLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR--TLRNFSGLEYLNLENSHLFSVGSL----EWL  122 (178)
Q Consensus        49 l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~----~~~  122 (178)
                      ...|+.|++|.|+.|+|+..   ..+..++.|+.|+|..|.+..+-+  -+.++++|+.|.+..|...+....    ..+
T Consensus        37 c~kMp~lEVLsLSvNkIssL---~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VL  113 (388)
T KOG2123|consen   37 CEKMPLLEVLSLSVNKISSL---APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVL  113 (388)
T ss_pred             HHhcccceeEEeeccccccc---hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHH
Confidence            35677788888888888752   455677788888888776665533  456788888888888876433321    225


Q ss_pred             hccCCCCEEe
Q 048040          123 SHLSSLRHLD  132 (178)
Q Consensus       123 ~~l~~L~~L~  132 (178)
                      ..+++|+.||
T Consensus       114 R~LPnLkKLD  123 (388)
T KOG2123|consen  114 RVLPNLKKLD  123 (388)
T ss_pred             HHcccchhcc
Confidence            6677777665

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.95  E-value=0.0022  Score=28.64  Aligned_cols=20  Identities=25%  Similarity=0.210  Sum_probs=9.9

Q ss_pred             CcEEEecCCCCCCCCCccccc
Q 048040          154 LKTFVLRSCALPPINPSFICG  174 (178)
Q Consensus       154 L~~l~l~~n~~~~~~~~~~~~  174 (178)
                      |++|++++|.++ .+|+.|++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTTT
T ss_pred             ccEEECCCCcCE-eCChhhcC
Confidence            455555555555 34444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.23  E-value=0.016  Score=24.05  Aligned_cols=13  Identities=62%  Similarity=0.687  Sum_probs=4.5

Q ss_pred             CCCEEeccCCCCC
Q 048040          127 SLRHLDLSYINLT  139 (178)
Q Consensus       127 ~L~~L~l~~n~i~  139 (178)
                      +|+.|++++|.++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3444444444443

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.09  E-value=0.051  Score=35.45  Aligned_cols=104  Identities=17%  Similarity=0.279  Sum_probs=36.6

Q ss_pred             hhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch-hccCCCCCcEEEeeCCccccCCchHHHhccCC
Q 048040           49 LLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSS  127 (178)
Q Consensus        49 l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  127 (178)
                      |.+..+|+.+.+.. .+... ....|..+..++.+.+..+ +..++. .+..++.++.+.+.. .+...+. ..+..+++
T Consensus         8 F~~~~~l~~i~~~~-~~~~I-~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~-~~F~~~~~   82 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKI-GENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGD-NAFSNCTN   82 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE--TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-T-TTTTT-TT
T ss_pred             HhCCCCCCEEEECC-CeeEe-Chhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccc-cccccccc
Confidence            33444555555543 23332 2334444545555555443 222322 344444555555543 2211111 12444555


Q ss_pred             CCEEeccCCCCCCcccHHHHHhccCCCcEEEecC
Q 048040          128 LRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRS  161 (178)
Q Consensus       128 L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~  161 (178)
                      |+.+++..+ +...+.  ..+.+. .++.+.+..
T Consensus        83 l~~i~~~~~-~~~i~~--~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGS--SSFSNC-NLKEINIPS  112 (129)
T ss_dssp             ECEEEETTT--BEEHT--TTTTT--T--EEE-TT
T ss_pred             ccccccCcc-ccEEch--hhhcCC-CceEEEECC
Confidence            666665543 333321  234444 555555543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.51  E-value=0.058  Score=43.26  Aligned_cols=112  Identities=22%  Similarity=0.210  Sum_probs=60.7

Q ss_pred             CCCCCEEEccCCCC-CCCCchhhhcccCCCcEEeccCC--CCCccc----hhccCCCCCcEEEeeCCc-cccCCchHHHh
Q 048040           52 LHDLRHLDLSNNDF-GGSPIPEFIGSLSKLRYLNLSCG--APLEVP----RTLRNFSGLEYLNLENSH-LFSVGSLEWLS  123 (178)
Q Consensus        52 l~~L~~L~l~~n~~-~~~~~~~~l~~l~~L~~L~l~~~--~~~~~~----~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~  123 (178)
                      .+.|+.+.+.++.- ............+.|+.|+++++  .....+    .....+.+|+.++++++. +..........
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            56666666666543 32112344556677777777652  222211    123345667777777776 43333222223


Q ss_pred             ccCCCCEEeccCCC-CCCcccHHHHHhccCCCcEEEecCCCC
Q 048040          124 HLSSLRHLDLSYIN-LTKSRDWFQVVAKLRSLKTFVLRSCAL  164 (178)
Q Consensus       124 ~l~~L~~L~l~~n~-i~~~~~~~~~~~~l~~L~~l~l~~n~~  164 (178)
                      .+++|++|.+.++. +++.. +......++.|++|+++.+..
T Consensus       267 ~c~~L~~L~l~~c~~lt~~g-l~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEG-LVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hCCCcceEccCCCCccchhH-HHHHHHhcCcccEEeeecCcc
Confidence            36677777766555 44443 244555667777777776543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.29  E-value=0.19  Score=32.67  Aligned_cols=116  Identities=14%  Similarity=0.258  Sum_probs=57.7

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccc-hhccC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVP-RTLRN   99 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~   99 (178)
                      ..++.+.+...         +...-...|.+..+|+.+.+..+ +... ....+.....++.+.+..+ ...++ ..+..
T Consensus        12 ~~l~~i~~~~~---------~~~I~~~~F~~~~~l~~i~~~~~-~~~i-~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~   79 (129)
T PF13306_consen   12 SNLESITFPNT---------IKKIGENAFSNCTSLKSINFPNN-LTSI-GDNAFSNCKSLESITFPNN-LKSIGDNAFSN   79 (129)
T ss_dssp             TT--EEEETST-----------EE-TTTTTT-TT-SEEEESST-TSCE--TTTTTT-TT-EEEEETST-T-EE-TTTTTT
T ss_pred             CCCCEEEECCC---------eeEeChhhccccccccccccccc-cccc-ceeeeeccccccccccccc-ccccccccccc
Confidence            46777777642         33333345777888999999885 6553 3456778878999999663 33343 36677


Q ss_pred             CCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCC
Q 048040          100 FSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSL  154 (178)
Q Consensus       100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L  154 (178)
                      +++++.+.+..+ +..... ..+..+ +|+.+.+.. .+...+  ...+.++++|
T Consensus        80 ~~~l~~i~~~~~-~~~i~~-~~f~~~-~l~~i~~~~-~~~~i~--~~~F~~~~~l  128 (129)
T PF13306_consen   80 CTNLKNIDIPSN-ITEIGS-SSFSNC-NLKEINIPS-NITKIE--ENAFKNCTKL  128 (129)
T ss_dssp             -TTECEEEETTT--BEEHT-TTTTT--T--EEE-TT-B-SS------GGG-----
T ss_pred             cccccccccCcc-ccEEch-hhhcCC-CceEEEECC-CccEEC--CccccccccC
Confidence            899999999765 322221 235666 888888775 444443  2355555554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.18  E-value=0.06  Score=43.18  Aligned_cols=115  Identities=27%  Similarity=0.284  Sum_probs=72.6

Q ss_pred             chhhhhCCCCCCEEEccCC-CC-CCCC--chhhhcccCCCcEEeccCCC-CCcc-chhc-cCCCCCcEEEeeCCc-cccC
Q 048040           45 ISPALLKLHDLRHLDLSNN-DF-GGSP--IPEFIGSLSKLRYLNLSCGA-PLEV-PRTL-RNFSGLEYLNLENSH-LFSV  116 (178)
Q Consensus        45 ~~~~l~~l~~L~~L~l~~n-~~-~~~~--~~~~l~~l~~L~~L~l~~~~-~~~~-~~~~-~~l~~L~~L~l~~n~-l~~~  116 (178)
                      +-+.....+.|+.|+++++ .. ....  .......+..|+.++++++. +... -..+ ..+++|+.|.+.+|. +++.
T Consensus       206 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~  285 (482)
T KOG1947|consen  206 LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDE  285 (482)
T ss_pred             HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchh
Confidence            3455677888999999873 22 2110  12334456778888888874 4432 1222 347889999988887 5666


Q ss_pred             CchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEe
Q 048040          117 GSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVL  159 (178)
Q Consensus       117 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l  159 (178)
                      ........++.|++|+++++.......+.....++++++.+.+
T Consensus       286 gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~  328 (482)
T KOG1947|consen  286 GLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL  328 (482)
T ss_pred             HHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence            6656567788899999998875433223344555666666554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.87  E-value=0.017  Score=41.17  Aligned_cols=87  Identities=21%  Similarity=0.193  Sum_probs=56.3

Q ss_pred             CCCEEEccCCCCCCCCchhhhcccCCCcEEeccCC-CCCcc-chhcc-CCCCCcEEEeeCCccccCCchHHHhccCCCCE
Q 048040           54 DLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCG-APLEV-PRTLR-NFSGLEYLNLENSHLFSVGSLEWLSHLSSLRH  130 (178)
Q Consensus        54 ~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~-~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  130 (178)
                      .++.++-+++.|... -...+..+..++.|.+.+| .++.. -+.++ ..++|+.|++++|.-.+......+..+++|+.
T Consensus       102 ~IeaVDAsds~I~~e-Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYE-GLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             eEEEEecCCchHHHH-HHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            456667777777654 4556677777777777777 33332 12222 44788888888888555555666788888888


Q ss_pred             EeccCCCCCCc
Q 048040          131 LDLSYINLTKS  141 (178)
Q Consensus       131 L~l~~n~i~~~  141 (178)
                      |.+++-.....
T Consensus       181 L~l~~l~~v~~  191 (221)
T KOG3864|consen  181 LHLYDLPYVAN  191 (221)
T ss_pred             HHhcCchhhhc
Confidence            88777554333

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.79  E-value=0.056  Score=24.91  Aligned_cols=20  Identities=20%  Similarity=0.348  Sum_probs=9.6

Q ss_pred             CCCcEEEecCCCCCCCCCcc
Q 048040          152 RSLKTFVLRSCALPPINPSF  171 (178)
Q Consensus       152 ~~L~~l~l~~n~~~~~~~~~  171 (178)
                      ++|+.|++++|.+...++..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHH
Confidence            34555555555555443333

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.79  E-value=0.056  Score=24.91  Aligned_cols=20  Identities=20%  Similarity=0.348  Sum_probs=9.6

Q ss_pred             CCCcEEEecCCCCCCCCCcc
Q 048040          152 RSLKTFVLRSCALPPINPSF  171 (178)
Q Consensus       152 ~~L~~l~l~~n~~~~~~~~~  171 (178)
                      ++|+.|++++|.+...++..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHH
Confidence            34555555555555443333

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.66  E-value=0.018  Score=41.03  Aligned_cols=78  Identities=27%  Similarity=0.348  Sum_probs=34.0

Q ss_pred             CcEEeccCCCCCcc-chhccCCCCCcEEEeeCCccccCCchHHHhc-cCCCCEEeccCCC-CCCcccHHHHHhccCCCcE
Q 048040           80 LRYLNLSCGAPLEV-PRTLRNFSGLEYLNLENSHLFSVGSLEWLSH-LSSLRHLDLSYIN-LTKSRDWFQVVAKLRSLKT  156 (178)
Q Consensus        80 L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~l~~n~-i~~~~~~~~~~~~l~~L~~  156 (178)
                      ++.++.+++.+... -+.+..++.++.|.+..|.-.+.-....++. .++|+.|++++|. |++..  ...+.++++|+.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G--L~~L~~lknLr~  180 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG--LACLLKLKNLRR  180 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH--HHHHHHhhhhHH
Confidence            44444444422211 2344455555555555555322222222222 3455555555553 44432  234445555554


Q ss_pred             EEe
Q 048040          157 FVL  159 (178)
Q Consensus       157 l~l  159 (178)
                      |.+
T Consensus       181 L~l  183 (221)
T KOG3864|consen  181 LHL  183 (221)
T ss_pred             HHh
Confidence            444

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=92.14  E-value=0.072  Score=27.96  Aligned_cols=12  Identities=50%  Similarity=1.328  Sum_probs=9.5

Q ss_pred             CCceeeeeeeec
Q 048040            6 RDCCKWRGVHCR   17 (178)
Q Consensus         6 ~~~c~~~~~~~~   17 (178)
                      .++|.|.||.|.
T Consensus        32 ~~~C~W~GV~Cd   43 (43)
T PF08263_consen   32 SDPCSWSGVTCD   43 (43)
T ss_dssp             S-CCCSTTEEE-
T ss_pred             CCCeeeccEEeC
Confidence            699999999994

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=89.95  E-value=0.14  Score=23.01  Aligned_cols=16  Identities=38%  Similarity=0.476  Sum_probs=7.5

Q ss_pred             CCCCEEeccCCCCCCc
Q 048040          126 SSLRHLDLSYINLTKS  141 (178)
Q Consensus       126 ~~L~~L~l~~n~i~~~  141 (178)
                      ++|++|++++|.|++.
T Consensus         2 ~~L~~L~l~~n~i~~~   17 (24)
T PF13516_consen    2 PNLETLDLSNNQITDE   17 (24)
T ss_dssp             TT-SEEE-TSSBEHHH
T ss_pred             CCCCEEEccCCcCCHH
Confidence            4555666666655443

...

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=89.14  E-value=0.37  Score=22.41  Aligned_cols=17  Identities=35%  Similarity=0.454  Sum_probs=11.6

Q ss_pred             CCCCEEeccCCCCCCcc
Q 048040          126 SSLRHLDLSYINLTKSR  142 (178)
Q Consensus       126 ~~L~~L~l~~n~i~~~~  142 (178)
                      .+|++|+++.|+|+...
T Consensus         2 ~~L~~L~L~~NkI~~IE   18 (26)
T smart00365        2 TNLEELDLSQNKIKKIE   18 (26)
T ss_pred             CccCEEECCCCccceec
Confidence            46777777777776553

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=86.08  E-value=0.6  Score=38.35  Aligned_cols=62  Identities=21%  Similarity=0.167  Sum_probs=28.5

Q ss_pred             ccCCCcEEeccCCCCCcc---chhccCCCCCcEEEeeCC--ccccCCchHHHhcc--CCCCEEeccCCCCCC
Q 048040           76 SLSKLRYLNLSCGAPLEV---PRTLRNFSGLEYLNLENS--HLFSVGSLEWLSHL--SSLRHLDLSYINLTK  140 (178)
Q Consensus        76 ~l~~L~~L~l~~~~~~~~---~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~~l--~~L~~L~l~~n~i~~  140 (178)
                      +.+.+..+.+++|.+..+   ..-.+..++|..|+|++|  .+...   ..+.+.  ..|++|-+.+|++..
T Consensus       216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~---~el~K~k~l~Leel~l~GNPlc~  284 (585)
T KOG3763|consen  216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE---SELDKLKGLPLEELVLEGNPLCT  284 (585)
T ss_pred             CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch---hhhhhhcCCCHHHeeecCCcccc
Confidence            344555555666544333   112233456666666666  22111   112221  245666666666543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=85.21  E-value=0.018  Score=42.19  Aligned_cols=83  Identities=16%  Similarity=0.105  Sum_probs=48.7

Q ss_pred             CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccC
Q 048040           20 TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRN   99 (178)
Q Consensus        20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~   99 (178)
                      ..+++.||++.|.+..+.         ..|+-+..+..++++-|.+..  +|.++..+..+..+++..|..++.|.++..
T Consensus        41 ~kr~tvld~~s~r~vn~~---------~n~s~~t~~~rl~~sknq~~~--~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k  109 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLVNLG---------KNFSILTRLVRLDLSKNQIKF--LPKDAKQQRETVNAASHKNNHSQQPKSQKK  109 (326)
T ss_pred             cceeeeehhhhhHHHhhc---------cchHHHHHHHHHhccHhhHhh--ChhhHHHHHHHHHHHhhccchhhCCccccc
Confidence            356777777777432211         112333444555666666665  566666666666666666666666666666


Q ss_pred             CCCCcEEEeeCCcc
Q 048040          100 FSGLEYLNLENSHL  113 (178)
Q Consensus       100 l~~L~~L~l~~n~l  113 (178)
                      .+.++.++.-.+.+
T Consensus       110 ~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen  110 EPHPKKNEQKKTEF  123 (326)
T ss_pred             cCCcchhhhccCcc
Confidence            66666666666554

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=85.14  E-value=1.2  Score=35.52  Aligned_cols=13  Identities=38%  Similarity=0.580  Sum_probs=7.3

Q ss_pred             CCCCCEEEccCCC
Q 048040           52 LHDLRHLDLSNND   64 (178)
Q Consensus        52 l~~L~~L~l~~n~   64 (178)
                      -.+|+++.++++.
T Consensus       319 ~~~L~~l~l~~c~  331 (483)
T KOG4341|consen  319 CHNLQVLELSGCQ  331 (483)
T ss_pred             CCceEEEeccccc
Confidence            3556666665554

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=83.59  E-value=0.9  Score=21.31  Aligned_cols=16  Identities=50%  Similarity=0.559  Sum_probs=12.6

Q ss_pred             CCCCEEeccCCCCCCc
Q 048040          126 SSLRHLDLSYINLTKS  141 (178)
Q Consensus       126 ~~L~~L~l~~n~i~~~  141 (178)
                      ++|++|++++|.|...
T Consensus         2 ~~L~~LdL~~N~i~~~   17 (28)
T smart00368        2 PSLRELDLSNNKLGDE   17 (28)
T ss_pred             CccCEEECCCCCCCHH
Confidence            4688888888888665

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=83.33  E-value=0.81  Score=37.62  Aligned_cols=38  Identities=34%  Similarity=0.468  Sum_probs=18.7

Q ss_pred             CCCCCcEEEeeCCccccCCchHHH-hccCCCCEEeccCC
Q 048040           99 NFSGLEYLNLENSHLFSVGSLEWL-SHLSSLRHLDLSYI  136 (178)
Q Consensus        99 ~l~~L~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~l~~n  136 (178)
                      +.+.+..+++++|++..+.....+ ...|+|..|+|++|
T Consensus       216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N  254 (585)
T KOG3763|consen  216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN  254 (585)
T ss_pred             CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence            345555555666655444322222 33455666666665

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=82.30  E-value=2.9  Score=33.46  Aligned_cols=145  Identities=23%  Similarity=0.277  Sum_probs=89.3

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCC-CchhhhcccCCCcEEeccCC-CCCcc-----
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGS-PIPEFIGSLSKLRYLNLSCG-APLEV-----   93 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~l~~l~~L~~L~l~~~-~~~~~-----   93 (178)
                      +.++.+-+.++..  .++..++.    .-++-..|+.+++..+..... .+...-...+.|+.+.++.| .+..-     
T Consensus       320 ~~L~~l~l~~c~~--fsd~~ft~----l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l  393 (483)
T KOG4341|consen  320 HNLQVLELSGCQQ--FSDRGFTM----LGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHL  393 (483)
T ss_pred             CceEEEeccccch--hhhhhhhh----hhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhh
Confidence            5677777777731  22222221    113456788888888876531 12333346778999999877 33322     


Q ss_pred             chhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCC-CCCcccHHHHHhccCCCcEEEecCCCCCCCCCccc
Q 048040           94 PRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYIN-LTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFI  172 (178)
Q Consensus        94 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~  172 (178)
                      ......+..+..+.+.+++.++......+..+++|+.+++.... ++..+ ...+..+++++++..+..   .+.+|..-
T Consensus       394 ~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~-i~~~~~~lp~i~v~a~~a---~~t~p~~v  469 (483)
T KOG4341|consen  394 SSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEA-ISRFATHLPNIKVHAYFA---PVTPPGFV  469 (483)
T ss_pred             hhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhh-hHHHHhhCccceehhhcc---CCCCcccc
Confidence            22234567899999999998777777778888999999988875 33332 244566777777655432   23445544


Q ss_pred             ccc
Q 048040          173 CGW  175 (178)
Q Consensus       173 ~~l  175 (178)
                      +++
T Consensus       470 ~~~  472 (483)
T KOG4341|consen  470 KGL  472 (483)
T ss_pred             ccc
Confidence            443

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=80.23  E-value=1.3  Score=20.59  Aligned_cols=17  Identities=35%  Similarity=0.438  Sum_probs=10.7

Q ss_pred             CCCEEeccCCCCCCccc
Q 048040          127 SLRHLDLSYINLTKSRD  143 (178)
Q Consensus       127 ~L~~L~l~~n~i~~~~~  143 (178)
                      +|+.|++++|.++..|+
T Consensus         3 ~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLTSLPE   19 (26)
T ss_pred             ccceeecCCCccccCcc
Confidence            46666666666666653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	178
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-31
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-07
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-05
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	5e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  118 bits (297), Expect = 2e-31
 Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 13/162 (8%)

Query: 7   DCCKWRGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFG 66
           + C + GV CR+    V  ++L +              +S +LL L  L  L LSN+   
Sbjct: 38  NPCTFDGVTCRD--DKVTSIDLSSKPLNVGF-----SAVSSSLLSLTGLESLFLSNSHIN 90

Query: 67  GSPIPEFIGSLSKLRYLNLSC---GAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLS 123
           GS +  F    + L  L+LS      P+    +L + SGL++LN+ ++ L   G +    
Sbjct: 91  GS-VSGF-KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 148

Query: 124 HLSSLRHLDLSYINLTKSR-DWFQVVAKLRSLKTFVLRSCAL 164
            L+SL  LDLS  +++ +    + +      LK   +    +
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI 190

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 72.2 bits (178), Expect = 2e-15
 Identities = 42/130 (32%), Positives = 57/130 (43%), Gaps = 15/130 (11%)

Query: 41  LKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSC----GAPLEVPRT 96
             G I P L    +L  L LS N   G  IP  +GSLSKLR L L      G   E+P+ 
Sbjct: 406 FTGKIPPTLSNCSELVSLHLSFNYLSG-TIPSSLGSLSKLRDLKLWLNMLEG---EIPQE 461

Query: 97  LRNFSGLEYLNLENSHLFSVGSL-EWLSHLSSLRHLDLSYINLTKS-RDWFQVVAKLRSL 154
           L     LE L L+ + L   G +   LS+ ++L  + LS   LT     W     +L +L
Sbjct: 462 LMYVKTLETLILDFNDL--TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG---RLENL 516

Query: 155 KTFVLRSCAL 164
               L + + 
Sbjct: 517 AILKLSNNSF 526

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 71.5 bits (176), Expect = 3e-15
 Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 11/105 (10%)

Query: 40  FLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLS----CGAPLEVPR 95
           +L GTI  +L  L  LR L L  N   G  IP+ +  +  L  L L      G   E+P 
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGE-IPQELMYVKTLETLILDFNDLTG---EIPS 484

Query: 96  TLRNFSGLEYLNLENSHLFSVGSL-EWLSHLSSLRHLDLSYINLT 139
            L N + L +++L N+ L   G + +W+  L +L  L LS  + +
Sbjct: 485 GLSNCTNLNWISLSNNRLT--GEIPKWIGRLENLAILKLSNNSFS 527

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 70.3 bits (173), Expect = 8e-15
 Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 11/105 (10%)

Query: 40  FLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSC----GAPLEVPR 95
              G  SP       +  LD+S N   G  IP+ IGS+  L  LNL      G    +P 
Sbjct: 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGY-IPKEIGSMPYLFILNLGHNDISG---SIPD 674

Query: 96  TLRNFSGLEYLNLENSHLFSVGSL-EWLSHLSSLRHLDLSYINLT 139
            + +  GL  L+L ++ L   G + + +S L+ L  +DLS  NL+
Sbjct: 675 EVGDLRGLNILDLSSNKLD--GRIPQAMSALTMLTEIDLSNNNLS 717

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 68.8 bits (169), Expect = 3e-14
 Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 16/132 (12%)

Query: 40  FLKGTIS-PALLKLHDLRHLDLSNNDFGGSPIPEF--IGSLSKLRYLNLSCGAPLEVPRT 96
            L         LKL+ L  LDLS N   G+ +  +       +L++L +S G  +     
Sbjct: 137 TLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAIS-GNKISGDVD 195

Query: 97  LRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLT----KSRDWFQVVAKLR 152
           +     LE+L++ +++      + +L   S+L+HLD+S   L+    ++      ++   
Sbjct: 196 VSRCVNLEFLDVSSNNF--STGIPFLGDCSALQHLDISGNKLSGDFSRA------ISTCT 247

Query: 153 SLKTFVLRSCAL 164
            LK   + S   
Sbjct: 248 ELKLLNISSNQF 259

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 68.8 bits (169), Expect = 3e-14
 Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 11/104 (10%)

Query: 41  LKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFI-GSLSKLRYLNLSC----GAPLEVPR 95
             G I P  LK   L++L L+ N F G  IP+F+ G+   L  L+LS     G    VP 
Sbjct: 259 FVGPIPPLPLK--SLQYLSLAENKFTGE-IPDFLSGACDTLTGLDLSGNHFYG---AVPP 312

Query: 96  TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLT 139
              + S LE L L +++      ++ L  +  L+ LDLS+   +
Sbjct: 313 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.1 bits (162), Expect = 2e-13
 Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 13/106 (12%)

Query: 41  LKGTISPAL--LKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLS----CGAPLEVP 94
             G I P L     + L+ L L NN F G  IP  + + S+L  L+LS     G    +P
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGK-IPPTLSNCSELVSLHLSFNYLSG---TIP 435

Query: 95  RTLRNFSGLEYLNLENSHLFSVGSL-EWLSHLSSLRHLDLSYINLT 139
            +L + S L  L L  + L   G + + L ++ +L  L L + +LT
Sbjct: 436 SSLGSLSKLRDLKLWLNML--EGEIPQELMYVKTLETLILDFNDLT 479

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.1 bits (162), Expect = 2e-13
 Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 11/104 (10%)

Query: 41  LKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSC----GAPLEVPRT 96
            +G  S  L +L      ++++  +GG        +   + +L++S     G    +P+ 
Sbjct: 596 FQGIRSEQLNRLSTRNPCNITSRVYGG-HTSPTFDNNGSMMFLDMSYNMLSG---YIPKE 651

Query: 97  LRNFSGLEYLNLENSHLFSVGSL-EWLSHLSSLRHLDLSYINLT 139
           + +   L  LNL ++ +   GS+ + +  L  L  LDLS   L 
Sbjct: 652 IGSMPYLFILNLGHNDI--SGSIPDEVGDLRGLNILDLSSNKLD 693

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 62.6 bits (153), Expect = 3e-12
 Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 5/100 (5%)

Query: 41  LKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNF 100
             G I   L     L  LDL+ N F G+ IP  +   S     N   G   +    ++N 
Sbjct: 526 FSGNIPAELGDCRSLIWLDLNTNLFNGT-IPAAMFKQSGKIAANFIAG---KRYVYIKND 581

Query: 101 SGLEYLNLENSHLFSVGSL-EWLSHLSSLRHLDLSYINLT 139
              +  +   + L   G   E L+ LS+    +++     
Sbjct: 582 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 57.2 bits (139), Expect = 3e-10
 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 13/108 (12%)

Query: 40  FLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLS----CGAPLEVPR 95
              G + P       L  L LS+N+F G    + +  +  L+ L+LS     G   E+P 
Sbjct: 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG---ELPE 361

Query: 96  TLRNFSG-LEYLNLENSHLFSVGSLE---WLSHLSSLRHLDLSYINLT 139
           +L N S  L  L+L +++    G +      +  ++L+ L L     T
Sbjct: 362 SLTNLSASLLTLDLSSNNF--SGPILPNLCQNPKNTLQELYLQNNGFT 407

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 75.3 bits (186), Expect = 6e-17
 Identities = 37/162 (22%), Positives = 61/162 (37%), Gaps = 35/162 (21%)

Query: 7   DCC--KWRGVHCRNTTGHVKVLNLRTSDY---------------------EFARRKFLKG 43
           DCC   W GV C   T   +V NL  S                              L G
Sbjct: 32  DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG 91

Query: 44  TISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSC----GAPLEVPRTLRN 99
            I PA+ KL  L +L +++ +  G  IP+F+  +  L  L+ S     G    +P ++ +
Sbjct: 92  PIPPAIAKLTQLHYLYITHTNVSG-AIPDFLSQIKTLVTLDFSYNALSG---TLPPSISS 147

Query: 100 FSGLEYLNLENSHLFSVGSL-EWLSHLSSL-RHLDLSYINLT 139
              L  +  + + +   G++ +     S L   + +S   LT
Sbjct: 148 LPNLVGITFDGNRI--SGAIPDSYGSFSKLFTSMTISRNRLT 187

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 60.2 bits (147), Expect = 2e-11
 Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 13/105 (12%)

Query: 40  FLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSC----GAPLEVPR 95
            L G I P    L +L  +DLS N   G       GS    + ++L+         ++ +
Sbjct: 185 RLTGKIPPTFANL-NLAFVDLSRNMLEGD-ASVLFGSDKNTQKIHLAKNSLAF---DLGK 239

Query: 96  TLRNFSGLEYLNLENSHLFSVGSL-EWLSHLSSLRHLDLSYINLT 139
            +     L  L+L N+ ++  G+L + L+ L  L  L++S+ NL 
Sbjct: 240 -VGLSKNLNGLDLRNNRIY--GTLPQGLTQLKFLHSLNVSFNNLC 281

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 59.9 bits (146), Expect = 2e-11
 Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 12/104 (11%)

Query: 41  LKGTISPALLKLHDL-RHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSC----GAPLEVPR 95
           + G I  +      L   + +S N   G  IP    +L+ L +++LS     G   +   
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTG-KIPPTFANLN-LAFVDLSRNMLEG---DASV 215

Query: 96  TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLT 139
              +    + ++L  + L     L  +    +L  LDL    + 
Sbjct: 216 LFGSDKNTQKIHLAKNSL--AFDLGKVGLSKNLNGLDLRNNRIY 257

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 52.9 bits (128), Expect = 6e-09
 Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 11/79 (13%)

Query: 40  FLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLS----CGAPLEVPR 95
            L   +   +    +L  LDL NN   G+ +P+ +  L  L  LN+S    CG   E+P 
Sbjct: 232 SLAFDL-GKVGLSKNLNGLDLRNNRIYGT-LPQGLTQLKFLHSLNVSFNNLCG---EIP- 285

Query: 96  TLRNFSGLEYLNLE-NSHL 113
              N    +      N  L
Sbjct: 286 QGGNLQRFDVSAYANNKCL 304

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 70.7 bits (173), Expect = 6e-15
 Identities = 19/134 (14%), Positives = 41/134 (30%), Gaps = 15/134 (11%)

Query: 41  LKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSC----------GAP 90
                  +   L DL  ++L N       +P+F+  L +L+ LN++C             
Sbjct: 479 QYENEELSWSNLKDLTDVELYNCPNMTQ-LPDFLYDLPELQSLNIACNRGISAAQLKADW 537

Query: 91  LEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAK 150
             +         ++   +  ++L    +   L  +  L  LD  +  +       +    
Sbjct: 538 TRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH----LEAFGT 593

Query: 151 LRSLKTFVLRSCAL 164
              L    L    +
Sbjct: 594 NVKLTDLKLDYNQI 607

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 67.6 bits (165), Expect = 7e-14
 Identities = 12/117 (10%), Positives = 35/117 (29%), Gaps = 3/117 (2%)

Query: 43  GTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSG 102
             ++        ++   +  N+    P    +  + KL  L+      +           
Sbjct: 538 TRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCV-HNKVRHLEAFGTNVK 596

Query: 103 LEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVL 159
           L  L L+ + +  +   ++ +    +  L  S+  L    + F     +  + +   
Sbjct: 597 LTDLKLDYNQIEEIPE-DFCAFTDQVEGLGFSHNKLKYIPNIFN-AKSVYVMGSVDF 651

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.4 bits (149), Expect = 1e-11
 Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 9/103 (8%)

Query: 45  ISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSC--------GAPLEVPRT 96
            S    K  +   + LS N+    P  E   + S +  + LS          +       
Sbjct: 665 CSMDDYKGINASTVTLSYNEIQKFP-TELFATGSPISTIILSNNLMTSIPENSLKPKDGN 723

Query: 97  LRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLT 139
            +N   L  ++L  + L S+      + L  L ++D+SY   +
Sbjct: 724 YKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS 766

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 60.3 bits (146), Expect = 3e-11
 Identities = 24/172 (13%), Positives = 51/172 (29%), Gaps = 12/172 (6%)

Query: 3   DEKRDCCKWRGVHC--RNTTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDL 60
           +  ++   W        +  G V  L+L             KG +  A+ +L +L+ L  
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFG--------AKGRVPDAIGQLTELKVLSF 354

Query: 61  SNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENSHLFSVGSL 119
             +    S        L+            +   +  L     L   +L    +     +
Sbjct: 355 GTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEM 414

Query: 120 EWLSHLSSLRHLDLSYINLT-KSRDWFQVVAKLRSLKTFVLRSCALPPINPS 170
           + +   S +   D    NLT +     + + +L  L+     +      N +
Sbjct: 415 KPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIA 466

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.0 bits (140), Expect = 2e-10
 Identities = 19/134 (14%), Positives = 40/134 (29%), Gaps = 12/134 (8%)

Query: 52  LHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLS----CGAPLEVPRTLRNFSG--LEY 105
              +  L  S+N     P      S+  +  ++ S          +  ++ ++ G     
Sbjct: 618 TDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST 677

Query: 106 LNLENSHLFSVGSLEWLSHLSSLRHLDLSY-----INLTKSRDWFQVVAKLRSLKTFVLR 160
           + L  + +    + E  +  S +  + LS      I     +           L T  LR
Sbjct: 678 VTLSYNEIQKFPT-ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLR 736

Query: 161 SCALPPINPSFICG 174
              L  ++  F   
Sbjct: 737 FNKLTSLSDDFRAT 750

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.6 bits (139), Expect = 2e-10
 Identities = 19/130 (14%), Positives = 39/130 (30%), Gaps = 15/130 (11%)

Query: 43  GTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSG 102
             IS A+ +L  L+ +  +N+ F            +   Y             +  N   
Sbjct: 438 TFISKAIQRLTKLQIIYFANSPFTYDN-IAVDWEDANSDYAKQYE----NEELSWSNLKD 492

Query: 103 LEYLNLENSHLFSVGSL-EWLSHLSSLRHLDLSYINLTKSRDWF-------QVVAKLRSL 154
           L  + L N     +  L ++L  L  L+ L+++      +                   +
Sbjct: 493 LTDVELYNCPN--MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550

Query: 155 KTFVLRSCAL 164
           + F +    L
Sbjct: 551 QIFYMGYNNL 560

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.4 bits (136), Expect = 5e-10
 Identities = 15/103 (14%), Positives = 30/103 (29%), Gaps = 5/103 (4%)

Query: 43  GTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSG 102
                     + L  +DL  N            +L  L  +++S       P    N S 
Sbjct: 718 KPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQ 777

Query: 103 LEYLNLENSHLFSVGSL-----EWLSHLSSLRHLDLSYINLTK 140
           L+   + +        +       ++   SL  L +   ++ K
Sbjct: 778 LKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK 820

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.7 bits (129), Expect = 4e-09
 Identities = 16/144 (11%), Positives = 37/144 (25%), Gaps = 16/144 (11%)

Query: 41  LKGTISPALLKLHDLRHLDLSNNDFG------GSPIPEFIGSLSKLRYLNLSCGAPL-EV 93
           ++   +        +  + LSNN           P      +   L  ++L     L  +
Sbjct: 685 IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLR-FNKLTSL 743

Query: 94  PRTLR--NFSGLEYLNLENSHL----FSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQV 147
               R      L  +++  +          +   L         D     + +   W   
Sbjct: 744 SDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQ--WPTG 801

Query: 148 VAKLRSLKTFVLRSCALPPINPSF 171
           +    SL    + S  +  ++   
Sbjct: 802 ITTCPSLIQLQIGSNDIRKVDEKL 825

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 12/104 (11%), Positives = 29/104 (27%), Gaps = 8/104 (7%)

Query: 44  TISPALLKLHDLRHLDLSNNDFGGS-----PIPEFIGSLSKLRYLNLSCGAPLEVPRTLR 98
           +     L    L+   + +             P  I +   L  L +      +V   L 
Sbjct: 767 SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL- 825

Query: 99  NFSGLEYLNLENSHLFSVGSLEWLSHLSS-LRHLDLSYINLTKS 141
               L  L++ ++   S+       ++ + +  L        + 
Sbjct: 826 -TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRG 868

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 10/88 (11%), Positives = 25/88 (28%), Gaps = 11/88 (12%)

Query: 41  LKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLS-----CGAPLEVPR 95
           +       +     L  L + +ND     + E +    +L  L+++           V  
Sbjct: 794 ILRQWPTGITTCPSLIQLQIGSNDIRK--VDEKL--TPQLYILDIADNPNISIDVTSVCP 849

Query: 96  TLRNFSGLEYLNLENSHLFSVGSLEWLS 123
            +    G+  L  + +          + 
Sbjct: 850 YIEA--GMYVLLYDKTQDIRGCDALGIE 875

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.8 bits (166), Expect = 6e-14
 Identities = 21/139 (15%), Positives = 46/139 (33%), Gaps = 13/139 (9%)

Query: 43  GTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSC---------GAPLEV 93
            T       L DL  +++ N       +P F+ +L +++ +N++C             + 
Sbjct: 239 KTEDLKWDNLKDLTDVEVYNCPNLTK-LPTFLKALPEMQLINVACNRGISGEQLKDDWQA 297

Query: 94  PRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRS 153
                    ++ + +  ++L +      L  +  L  L+  Y  L      F        
Sbjct: 298 LADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAF---GSEIK 354

Query: 154 LKTFVLRSCALPPINPSFI 172
           L +  L    +  I  +F 
Sbjct: 355 LASLNLAYNQITEIPANFC 373

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.8 bits (166), Expect = 6e-14
 Identities = 27/179 (15%), Positives = 50/179 (27%), Gaps = 22/179 (12%)

Query: 3   DEKRDCCKWR---GVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLD 59
           +  ++   W    GV   N+ G V  L+L              G +  A+ +L +L  L 
Sbjct: 61  NFNKELDMWGAQPGVSL-NSNGRVTGLSLEGFG--------ASGRVPDAIGQLTELEVLA 111

Query: 60  LSNNDFGGSP---IPEFIGSLSKLRYLNLS-CGAPLEVPRTL--RNFSGLEYLNLENSHL 113
           L ++    +     P+ I +                         +FS L    + NS  
Sbjct: 112 LGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCI-NSDP 170

Query: 114 FSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFI 172
                 +          +     N+T          +L  L+ F + +      N    
Sbjct: 171 QQKSIKKSSRITLKDTQIGQLSNNITFVSKAV---MRLTKLRQFYMGNSPFVAENICEA 226

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.9 bits (156), Expect = 1e-12
 Identities = 21/139 (15%), Positives = 44/139 (31%), Gaps = 12/139 (8%)

Query: 43  GTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPL-EVPRTLRNFS 101
              +      + L  +DL  N            +L  L  ++LS      + P    N S
Sbjct: 478 KDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLS-YNSFSKFPTQPLNSS 536

Query: 102 GLEYLNLENSHLFSVGSL-----EWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKT 156
            L+   + N              E ++   SL  L +   ++ K  +         ++  
Sbjct: 537 TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI-----TPNISV 591

Query: 157 FVLRSCALPPINPSFICGW 175
             ++      I+ S++C +
Sbjct: 592 LDIKDNPNISIDLSYVCPY 610

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.8 bits (153), Expect = 3e-12
 Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 9/106 (8%)

Query: 43  GTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLS--------CGAPLEVP 94
             + P   K  ++  ++LSNN     P  E   + S L  +NL           +  +  
Sbjct: 423 DPLDPTPFKGINVSSINLSNNQISKFP-KELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481

Query: 95  RTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK 140
              +N   L  ++L  + L  +      + L  L  +DLSY + +K
Sbjct: 482 ENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK 527

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.7 bits (145), Expect = 4e-11
 Identities = 12/117 (10%), Positives = 33/117 (28%), Gaps = 2/117 (1%)

Query: 43  GTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSG 102
                       ++ + +  N+    P+   +  + KL  L               +   
Sbjct: 295 WQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIK 354

Query: 103 LEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVL 159
           L  LNL  + +  + +  +      + +L  ++  L    + F     +  +     
Sbjct: 355 LASLNLAYNQITEIPA-NFCGFTEQVENLSFAHNKLKYIPNIFD-AKSVSVMSAIDF 409

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.3 bits (144), Expect = 5e-11
 Identities = 23/135 (17%), Positives = 41/135 (30%), Gaps = 15/135 (11%)

Query: 44  TISPALL-KLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLS--------CGAPLEVP 94
            I          + +L  ++N     P      S+S +  ++ S              + 
Sbjct: 367 EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426

Query: 95  RTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLT-----KSRDWFQVVA 149
            T      +  +NL N+ +      E  S  S L  ++L    LT       +D  +   
Sbjct: 427 PTPFKGINVSSINLSNNQISKF-PKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFK 485

Query: 150 KLRSLKTFVLRSCAL 164
               L +  LR   L
Sbjct: 486 NTYLLTSIDLRFNKL 500

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 9/105 (8%)

Query: 39  KFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSC----GAPLEVP 94
                 +  +L K+  L  L+   N   G   P F GS  KL  LNL+       P    
Sbjct: 316 NLKTFPVETSLQKMKKLGMLECLYNQLEGKL-PAF-GSEIKLASLNLAYNQITEIP---A 370

Query: 95  RTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLT 139
                   +E L+  ++ L  + ++     +S +  +D SY  + 
Sbjct: 371 NFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG 415

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 17/131 (12%), Positives = 38/131 (29%), Gaps = 13/131 (9%)

Query: 43  GTISPALLKLHDLRHLDLSNNDFGGSP-------IPEFIGSLSKLRYLNLSCG--APLEV 93
             +   L  L +++ ++++ N                      K++ + +         V
Sbjct: 263 TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPV 322

Query: 94  PRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRS 153
             +L+    L  L    + L   G L        L  L+L+Y  +T+             
Sbjct: 323 ETSLQKMKKLGMLECLYNQL--EGKLPAFGSEIKLASLNLAYNQITEIPA--NFCGFTEQ 378

Query: 154 LKTFVLRSCAL 164
           ++        L
Sbjct: 379 VENLSFAHNKL 389

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 16/159 (10%), Positives = 41/159 (25%), Gaps = 29/159 (18%)

Query: 40  FLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLS-CGAPLEVPRTLR 98
             + +I  +         +   +N+     + + +  L+KLR   +       E      
Sbjct: 170 PQQKSIKKSSRITLKDTQIGQLSNNITF--VSKAVMRLTKLRQFYMGNSPFVAENICEAW 227

Query: 99  NFSGLEYLNLENSHLFSVGSLE------------------WLSHLSSLRHLDLSY----- 135
                EY     +      +L+                  +L  L  ++ ++++      
Sbjct: 228 ENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287

Query: 136 -INLTKSRDWFQVVAKLRSLKTFVLRSCALP--PINPSF 171
              L               ++   +    L   P+  S 
Sbjct: 288 GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL 326

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.8 bits (122), Expect = 5e-08
 Identities = 13/97 (13%), Positives = 26/97 (26%), Gaps = 6/97 (6%)

Query: 49  LLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNL 108
                DL    ++++      I +      K   +         V + +   + L    +
Sbjct: 155 REDFSDLIKDCINSD-PQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYM 213

Query: 109 ENSHL-----FSVGSLEWLSHLSSLRHLDLSYINLTK 140
            NS             E   +    +  DL + NL  
Sbjct: 214 GNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKD 250

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.7 bits (166), Expect = 6e-14
 Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 3/117 (2%)

Query: 41  LKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLS-CGAPLEVPRTLRN 99
           ++     A   L  L  L L+ N             LS L+ L              + +
Sbjct: 64  IQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKLVAVETNLASLENFPIGH 122

Query: 100 FSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSLK 155
              L+ LN+ ++ + S    E+ S+L++L HLDLS   +        +V+ ++  L 
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 66.6 bits (163), Expect = 1e-13
 Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 8/116 (6%)

Query: 44  TISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSC----GAPLEVPRTLRN 99
           T+S   L L  L HLD  +++           SL  L YL++S      A          
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF---NGIFNG 443

Query: 100 FSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSL 154
            S LE L +  +        +  + L +L  LDLS   L + S   F  ++ L+ L
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 66.2 bits (162), Expect = 2e-13
 Identities = 29/136 (21%), Positives = 58/136 (42%), Gaps = 6/136 (4%)

Query: 41  LKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV--PRTLR 98
           L+   S +     +L+ LDLS  +           SLS L  L L+ G P++        
Sbjct: 40  LRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILT-GNPIQSLALGAFS 97

Query: 99  NFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFV 158
             S L+ L    ++L S+ +   + HL +L+ L++++  +   +   +  + L +L+   
Sbjct: 98  GLSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLD 155

Query: 159 LRSCALPPINPSFICG 174
           L S  +  I  + +  
Sbjct: 156 LSSNKIQSIYCTDLRV 171

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.0 bits (159), Expect = 5e-13
 Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 11/126 (8%)

Query: 41  LKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSC----GAPLEVPRT 96
            +   +     L  L  L ++ N F  + +P+    L  L +L+LS           P  
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS---PTA 489

Query: 97  LRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKS-RDWFQVVAKLRSLK 155
             + S L+ LN+ +++ FS+        L+SL+ LD S  ++  S +   Q      SL 
Sbjct: 490 FNSLSSLQVLNMSHNNFFSL-DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF--PSSLA 546

Query: 156 TFVLRS 161
              L  
Sbjct: 547 FLNLTQ 552

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 61.6 bits (150), Expect = 9e-12
 Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 5/118 (4%)

Query: 54  DLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLS-CGAPLEVPRTLRNFSGLEYLNLENSH 112
             ++LDLS N         F  S  +L+ L+LS C          ++ S L  L L  + 
Sbjct: 29  STKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 113 LFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPS 170
           + S+ +L   S LSSL+ L     NL    +    +  L++LK   +    +      
Sbjct: 88  IQSL-ALGAFSGLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFKLP 142

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.2 bits (136), Expect = 6e-10
 Identities = 27/133 (20%), Positives = 46/133 (34%), Gaps = 10/133 (7%)

Query: 44  TISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGL 103
                       +HL+L N  FG  P    + SL +L + +           +  +   L
Sbjct: 295 ERVKDFSYNFGWQHLELVNCKFGQFP-TLKLKSLKRLTFTSNK----GGNAFSEVDLPSL 349

Query: 104 EYLNLENSHLFSVGSL-EWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSC 162
           E+L+L  + L   G   +     +SL++LDLS+  +      F     L  L+    +  
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF---LGLEQLEHLDFQHS 406

Query: 163 AL-PPINPSFICG 174
            L      S    
Sbjct: 407 NLKQMSEFSVFLS 419

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.2 bits (136), Expect = 6e-10
 Identities = 27/146 (18%), Positives = 47/146 (32%), Gaps = 8/146 (5%)

Query: 27  NLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLS 86
           NL   ++  A   +    I      L ++    L +          +      L  +N  
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCK 315

Query: 87  CGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQ 146
            G        L++   L + + +  + FS         L SL  LDLS   L+      Q
Sbjct: 316 FGQFP--TLKLKSLKRLTFTSNKGGNAFS------EVDLPSLEFLDLSRNGLSFKGCCSQ 367

Query: 147 VVAKLRSLKTFVLRSCALPPINPSFI 172
                 SLK   L    +  ++ +F+
Sbjct: 368 SDFGTTSLKYLDLSFNGVITMSSNFL 393

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.8 bits (135), Expect = 9e-10
 Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 7/121 (5%)

Query: 40  FLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLE--VPRTL 97
            L    +  +  L  L+ L++++N      +PE+  +L+ L +L+LS    ++      L
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS-SNKIQSIYCTDL 169

Query: 98  RNFSGLEYLN--LENSHLFSVGSLEWLSHLSSLRHLDLSY--INLTKSRDWFQVVAKLRS 153
           R    +  LN  L+ S                L  L L     +L   +   Q +A L  
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV 229

Query: 154 L 154
            
Sbjct: 230 H 230

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 28/141 (19%), Positives = 47/141 (33%), Gaps = 25/141 (17%)

Query: 41  LKGTISPALLK-LHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLS----CGAPLEVPR 95
            +    P +   L +L  LDLS         P    SLS L+ LN+S             
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLS-PTAFNSLSSLQVLNMSHNNFFSLD---TF 512

Query: 96  TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSY------INLTKSRDWFQVVA 149
             +  + L+ L+   +H+ +    E     SSL  L+L+               W     
Sbjct: 513 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQW----- 567

Query: 150 KLRSLKTFVLR----SCALPP 166
            ++  +  ++      CA P 
Sbjct: 568 -IKDQRQLLVEVERMECATPS 587

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.7 bits (114), Expect = 5e-07
 Identities = 29/143 (20%), Positives = 47/143 (32%), Gaps = 16/143 (11%)

Query: 40  FLKGTISPALLKLHDLR----HLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV-- 93
            ++      L  LH +      LDLS N      I        +L  L L       +  
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF--IQPGAFKEIRLHKLTLR-NNFDSLNV 216

Query: 94  -PRTLRNFSGLEYLNLENSHLFSVGSLEWL--SHLSSLRHLDLSYINLTK----SRDWFQ 146
               ++  +GLE   L      + G+LE    S L  L +L +    L        D   
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID 276

Query: 147 VVAKLRSLKTFVLRSCALPPINP 169
           +   L ++ +F L S  +  +  
Sbjct: 277 LFNCLTNVSSFSLVSVTIERVKD 299

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 19/105 (18%), Positives = 30/105 (28%), Gaps = 5/105 (4%)

Query: 39  KFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRY----LNLSCGAPLEVP 94
                 +      L +L HLDLS+N          +  L ++      L+LS      + 
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-YCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193

Query: 95  RTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLT 139
                   L  L L N+          +  L+ L    L      
Sbjct: 194 PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 67.0 bits (164), Expect = 8e-14
 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 2/110 (1%)

Query: 48  ALLKLHDLRHLDLSNNDFGGSPIPEFIGS-LSKLRYLNLSCGAPLEVPRTLRNFSGLEYL 106
              KL  L  L LS+N               + L+YL+LS    + +         LE+L
Sbjct: 47  VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 106

Query: 107 NLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSLK 155
           + ++S+L  +        L +L +LD+S+ +        F  ++ L  LK
Sbjct: 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 156

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 53.1 bits (128), Expect = 6e-09
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 6/111 (5%)

Query: 48  ALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV--PRTLRNFSGLEY 105
               L  L  L ++ N F  + +P+    L  L +L+LS    LE   P    + S L+ 
Sbjct: 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS-QCQLEQLSPTAFNSLSSLQV 203

Query: 106 LNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQ-VVAKLRSL 154
           LN+ +++ FS+        L+SL+ LD S  ++    +   Q   + L  L
Sbjct: 204 LNMSHNNFFSL-DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 253

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 6/99 (6%)

Query: 39  KFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPE--FIGSLSKLRYLNLSCGAPLEVPR- 95
            F +  +     +L +L  LDLS        +    F   LS L+ LN+S      +   
Sbjct: 161 SFQENFLPDIFTELRNLTFLDLSQCQL--EQLSPTAFNS-LSSLQVLNMSHNNFFSLDTF 217

Query: 96  TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLS 134
             +  + L+ L+   +H+ +    E     SSL  L+L+
Sbjct: 218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.6 bits (163), Expect = 2e-13
 Identities = 26/132 (19%), Positives = 51/132 (38%), Gaps = 7/132 (5%)

Query: 41  LKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV--PRTLR 98
           L+   +    +   L  LD+  N       PE    L  L+ LNL     L     +T  
Sbjct: 37  LRRLPAANFTRYSQLTSLDVGFNTISKLE-PELCQKLPMLKVLNLQ-HNELSQLSDKTFA 94

Query: 99  NFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFV 158
             + L  L+L ++ +  + +        +L  LDLS+  L+ ++       +L +L+  +
Sbjct: 95  FCTNLTELHLMSNSIQKIKN-NPFVKQKNLITLDLSHNGLSSTKL--GTQVQLENLQELL 151

Query: 159 LRSCALPPINPS 170
           L +  +  +   
Sbjct: 152 LSNNKIQALKSE 163

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.5 bits (155), Expect = 2e-12
 Identities = 23/128 (17%), Positives = 42/128 (32%), Gaps = 6/128 (4%)

Query: 50  LKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV---PRTLRNFSGLEYL 106
           L    L  L+L+ N        +    L  L  L+L     +      +  R    +  +
Sbjct: 378 LAHSPLHILNLTKNKISKIE-SDAFSWLGHLEVLDLG-LNEIGQELTGQEWRGLENIFEI 435

Query: 107 NLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPP 166
            L  +    + +    + + SL+ L L  + L            LR+L    L +  +  
Sbjct: 436 YLSYNKYLQL-TRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494

Query: 167 INPSFICG 174
           IN   + G
Sbjct: 495 INDDMLEG 502

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.1 bits (154), Expect = 3e-12
 Identities = 29/117 (24%), Positives = 42/117 (35%), Gaps = 3/117 (2%)

Query: 41  LKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLS-CGAPLEVPRTLRN 99
           +    S A   L  L  LDL  N+ G     +    L  +  + LS          +   
Sbjct: 393 ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL 452

Query: 100 FSGLEYLNLENSHLFSVG-SLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSL 154
              L+ L L    L +V  S      L +L  LDLS  N+   + D  + + KL  L
Sbjct: 453 VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL 509

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.9 bits (151), Expect = 6e-12
 Identities = 25/140 (17%), Positives = 46/140 (32%), Gaps = 12/140 (8%)

Query: 41  LKGTISP-ALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLS---CGAPLEVPRT 96
           +   ++      L ++  + LS N +           +  L+ L L           P  
Sbjct: 417 IGQELTGQEWRGLENIFEIYLSYNKYLQLT-RNSFALVPSLQRLMLRRVALKNVDSSPSP 475

Query: 97  LRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK------SRDWFQVVAK 150
            +    L  L+L N+++ ++ + + L  L  L  LDL + NL +             +  
Sbjct: 476 FQPLRNLTILDLSNNNIANI-NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG 534

Query: 151 LRSLKTFVLRSCALPPINPS 170
           L  L    L S     I   
Sbjct: 535 LSHLHILNLESNGFDEIPVE 554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.9 bits (151), Expect = 7e-12
 Identities = 32/142 (22%), Positives = 56/142 (39%), Gaps = 10/142 (7%)

Query: 40  FLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGS---LSKLRYLNLSCGAPLEV-PR 95
            + G  S     L +L++L LSN+      +          S L  LNL+     ++   
Sbjct: 340 DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD 399

Query: 96  TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSL 154
                  LE L+L  + +    + +    L ++  + LSY    + +R+ F   A + SL
Sbjct: 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF---ALVPSL 456

Query: 155 KTFVLRSCAL--PPINPSFICG 174
           +  +LR  AL     +PS    
Sbjct: 457 QRLMLRRVALKNVDSSPSPFQP 478

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.0 bits (146), Expect = 3e-11
 Identities = 35/140 (25%), Positives = 50/140 (35%), Gaps = 8/140 (5%)

Query: 41  LKGTISPALLKLHDLRHLDLSNNDFGGSPIPEF-IGSLSKLRYLNLSCGAPLEV--PRTL 97
           L  T     ++L +L+ L LSNN        E  I + S L+ L LS    ++   P   
Sbjct: 133 LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS-SNQIKEFSPGCF 191

Query: 98  RNFSGLEYLNLENSHLFSV--GSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSL 154
                L  L L N  L       L      +S+R+L LS   L+  S   F  + K  +L
Sbjct: 192 HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL-KWTNL 250

Query: 155 KTFVLRSCALPPINPSFICG 174
               L    L  +       
Sbjct: 251 TMLDLSYNNLNVVGNDSFAW 270

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.6 bits (145), Expect = 4e-11
 Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 5/124 (4%)

Query: 52  LHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV-PRTLRNFSGLEYLNLEN 110
             ++  L+L++N     P   F    S+L  L++      ++ P   +    L+ LNL++
Sbjct: 24  PTNITVLNLTHNQLRRLPAANF-TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82

Query: 111 SHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPS 170
           + L  + S +  +  ++L  L L   ++ K ++      K ++L T  L    L      
Sbjct: 83  NELSQL-SDKTFAFCTNLTELHLMSNSIQKIKN--NPFVKQKNLITLDLSHNGLSSTKLG 139

Query: 171 FICG 174
               
Sbjct: 140 TQVQ 143

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 34/155 (21%), Positives = 57/155 (36%), Gaps = 14/155 (9%)

Query: 22  HVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLR 81
            +++L+L+ ++     +    G     L  L  L  L+L +N F   P  E    L +L+
Sbjct: 505 KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP-VEVFKDLFELK 563

Query: 82  YLNLS----CGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYIN 137
            ++L        P        N   L+ LNL+ + + SV    +     +L  LD+ +  
Sbjct: 564 IIDLGLNNLNTLP---ASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNP 620

Query: 138 LT---KSRDWFQVVAKLRSLKTFVLRS---CALPP 166
                +S  WF             L S   C  PP
Sbjct: 621 FDCTCESIAWFVNWINETHTNIPELSSHYLCNTPP 655

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 12/106 (11%)

Query: 40  FLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLS----------CGA 89
            L    + +   L  L +  L  N+         +  L  +RYLNL              
Sbjct: 259 NLNVVGNDSFAWLPQLEYFFLEYNNIQHLF-SHSLHGLFNVRYLNLKRSFTKQSISLASL 317

Query: 90  PLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSY 135
           P     + +    LE+LN+E++ +  + S    + L +L++L LS 
Sbjct: 318 PKIDDFSFQWLKCLEHLNMEDNDIPGIKS-NMFTGLINLKYLSLSN 362

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.1 bits (159), Expect = 6e-13
 Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 2/113 (1%)

Query: 44  TISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLS-CGAPLEVPRTLRNFSG 102
            +S   + L +L+HLD  ++            SL KL YL++S     ++        + 
Sbjct: 390 IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449

Query: 103 LEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSL 154
           L  L +  +           ++ ++L  LDLS   L + S   F  + +L+ L
Sbjct: 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL 502

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 64.3 bits (157), Expect = 9e-13
 Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 3/116 (2%)

Query: 42  KGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIG-SLSKLRYLNLSCGAPLEVPRTLRNF 100
           KG+IS   + L  L +LDLS N    S    +     + LR+L+LS    + +       
Sbjct: 339 KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGL 398

Query: 101 SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKT 156
             L++L+ ++S L  V        L  L +LD+SY N     D   +   L SL T
Sbjct: 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD--GIFLGLTSLNT 452

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.9 bits (156), Expect = 1e-12
 Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 6/123 (4%)

Query: 41  LKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV--PRTLR 98
            K       L L  L  L ++ N F  + +     + + L +L+LS    LE        
Sbjct: 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS-KCQLEQISWGVFD 494

Query: 99  NFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFV 158
               L+ LN+ +++L  +      + L SL  LD S+  +  S+   Q     +SL  F 
Sbjct: 495 TLHRLQLLNMSHNNLLFL-DSSHYNQLYSLSTLDCSFNRIETSKGILQ--HFPKSLAFFN 551

Query: 159 LRS 161
           L +
Sbjct: 552 LTN 554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.5 bits (142), Expect = 9e-11
 Identities = 29/136 (21%), Positives = 54/136 (39%), Gaps = 6/136 (4%)

Query: 41  LKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV--PRTLR 98
           LK   S +     +L+ LDLS  +       +    L  L  L L+ G P++   P +  
Sbjct: 44  LKILKSYSFSNFSELQWLDLSRCEIETIE-DKAWHGLHHLSNLILT-GNPIQSFSPGSFS 101

Query: 99  NFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFV 158
             + LE L    + L S+ S   +  L +L+ L++++  +  S       + L +L    
Sbjct: 102 GLTSLENLVAVETKLASLES-FPIGQLITLKKLNVAHNFIH-SCKLPAYFSNLTNLVHVD 159

Query: 159 LRSCALPPINPSFICG 174
           L    +  I  + +  
Sbjct: 160 LSYNYIQTITVNDLQF 175

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 5/118 (4%)

Query: 54  DLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENSH 112
             +++DLS N         F  + S+L++L+LS      +          L  L L  + 
Sbjct: 33  STKNIDLSFNPLKILKSYSF-SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 113 LFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPS 170
           + S  S    S L+SL +L      L         + +L +LK   +    +      
Sbjct: 92  IQSF-SPGSFSGLTSLENLVAVETKLASLES--FPIGQLITLKKLNVAHNFIHSCKLP 146

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 25/110 (22%), Positives = 38/110 (34%), Gaps = 8/110 (7%)

Query: 47  PALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYL 106
             + K    + L +        P       L  L+ L L+      +         L YL
Sbjct: 301 EDVPKHFKWQSLSIIRCQLKQFPT----LDLPFLKSLTLT-MNKGSISFKKVALPSLSYL 355

Query: 107 NLENSHL--FSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSL 154
           +L  + L      S   L   +SLRHLDLS+         F  + +L+ L
Sbjct: 356 DLSRNALSFSGCCSYSDLG-TNSLRHLDLSFNGAIIMSANFMGLEELQHL 404

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.6 bits (119), Expect = 9e-08
 Identities = 18/100 (18%), Positives = 30/100 (30%), Gaps = 9/100 (9%)

Query: 39  KFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLS----CGAPLEVP 94
            F   T+S       +L  LDLS              +L +L+ LN+S            
Sbjct: 459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQIS-WGVFDTLHRLQLLNMSHNNLLFLD---S 514

Query: 95  RTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLS 134
                   L  L+   + + +           SL   +L+
Sbjct: 515 SHYNQLYSLSTLDCSFNRIETSKG-ILQHFPKSLAFFNLT 553

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 20/137 (14%), Positives = 43/137 (31%), Gaps = 12/137 (8%)

Query: 40  FLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLS-------CGAPLE 92
            L    S  + +L  L+ L++++N      +P +  +L+ L +++LS           L+
Sbjct: 115 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174

Query: 93  VPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLR 152
             R          L++  + +  +           L  L L     + +      +  L 
Sbjct: 175 FLRENPQV--NLSLDMSLNPIDFIQD--QAFQGIKLHELTLRGNFNSSNIMK-TCLQNLA 229

Query: 153 SLKTFVLRSCALPPINP 169
            L    L          
Sbjct: 230 GLHVHRLILGEFKDERN 246

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 21/126 (16%), Positives = 40/126 (31%), Gaps = 8/126 (6%)

Query: 46  SPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEY 105
                 L ++  + L+        + +      K + L++      + P    +   L+ 
Sbjct: 278 IVKFHCLANVSAMSLAGVSI--KYLEDVPK-HFKWQSLSIIRCQLKQFP--TLDLPFLKS 332

Query: 106 LNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALP 165
           L L  +             L SL +LDLS   L+ S           SL+   L      
Sbjct: 333 LTLTMNKGSISFKK---VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389

Query: 166 PINPSF 171
            ++ +F
Sbjct: 390 IMSANF 395

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 11/109 (10%), Positives = 25/109 (22%), Gaps = 11/109 (10%)

Query: 39  KFLKGTISPALLKLHDLRHLDLSNNDFGG-----SPIPEFIGSLSKLRY--LNLSCGAPL 91
                 +   L  L  L    L   +F          P  +  L  +      L+     
Sbjct: 215 FNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDF 274

Query: 92  EV-PRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLT 139
                     + +  ++L    +  +     +      + L +    L 
Sbjct: 275 SDDIVKFHCLANVSAMSLAGVSIKYLED---VPKHFKWQSLSIIRCQLK 320

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.1 bits (154), Expect = 3e-12
 Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 5/126 (3%)

Query: 41  LKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV--PRTLR 98
                S        L+ LDL+      S +P  +  LS L+ L LS     E     +  
Sbjct: 266 FFNISSNTFHCFSGLQELDLTATHL--SELPSGLVGLSTLKKLVLS-ANKFENLCQISAS 322

Query: 99  NFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFV 158
           NF  L +L+++ +          L +L +LR LDLS+ ++  S      +  L  L++  
Sbjct: 323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLN 382

Query: 159 LRSCAL 164
           L     
Sbjct: 383 LSYNEP 388

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.8 bits (148), Expect = 2e-11
 Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 6/119 (5%)

Query: 41  LKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV--PRTLR 98
                + A  +   L  LDL+              +L  L+ LNLS  + L++   +   
Sbjct: 388 PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS-HSLLDISSEQLFD 446

Query: 99  NFSGLEYLNLENSHL--FSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSL 154
               L++LNL+ +H    ++     L  L  L  L LS+ +L+   +  F  +  +  +
Sbjct: 447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV 505

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.3 bits (144), Expect = 5e-11
 Identities = 23/132 (17%), Positives = 46/132 (34%), Gaps = 7/132 (5%)

Query: 41  LKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV--PRTLR 98
           L    +    +L +L  LDL+          +   S  +L  L L+   PL       L 
Sbjct: 45  LPTIQNTTFSRLINLTFLDLTRCQIYWIH-EDTFQSQHRLDTLVLT-ANPLIFMAETALS 102

Query: 99  NFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFV 158
               L++L    + + S+     L +  +L  L L   +++  +           LK   
Sbjct: 103 GPKALKHLFFIQTGISSIDF-IPLHNQKTLESLYLGSNHISSIKL--PKGFPTEKLKVLD 159

Query: 159 LRSCALPPINPS 170
            ++ A+  ++  
Sbjct: 160 FQNNAIHYLSKE 171

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.5 bits (142), Expect = 8e-11
 Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 5/135 (3%)

Query: 43  GTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLS--CGAPLEVPRTLRNF 100
              +  L  L  L+ L+LS N+       E      +L  L+L+       +     +N 
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYNEPLSLK-TEAFKECPQLELLDLAFTRLKVKDAQSPFQNL 424

Query: 101 SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSLKTFVL 159
             L+ LNL +S L  + S +    L +L+HL+L   +  K +      +  L  L+  VL
Sbjct: 425 HLLKVLNLSHSLL-DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483

Query: 160 RSCALPPINPSFICG 174
             C L  I+      
Sbjct: 484 SFCDLSSIDQHAFTS 498

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 22/120 (18%), Positives = 43/120 (35%), Gaps = 5/120 (4%)

Query: 52  LHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV-PRTLRNFSGLEYLNLEN 110
            +    L+ S N         F   L  L +L+L+      +   T ++   L+ L L  
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTF-SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 111 SHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPS 170
           + L  +     LS   +L+HL      ++        +   ++L++  L S  +  I   
Sbjct: 91  NPLIFMAE-TALSGPKALKHLFFIQTGISSIDF--IPLHNQKTLESLYLGSNHISSIKLP 147

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 21/120 (17%), Positives = 37/120 (30%), Gaps = 10/120 (8%)

Query: 41  LKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLS----CGAPLEVPRT 96
           +           H L  L L+ N          +     L++L                 
Sbjct: 69  IYWIHEDTFQSQHRLDTLVLTANPLIFMA-ETALSGPKALKHLFFIQTGISSID---FIP 124

Query: 97  LRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSLK 155
           L N   LE L L ++H+ S+  L        L+ LD     +   S++    + +  +L 
Sbjct: 125 LHNQKTLESLYLGSNHISSI-KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS 183

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 7/124 (5%)

Query: 41  LKGTISPALLKLHDLRHLDLSNNDFGGSPI--PEFIGSLSKLRYLNLS-CGAPLEVPRTL 97
           L  +       L  L+HL+L  N F    I     + +L +L  L LS C          
Sbjct: 437 LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF 496

Query: 98  RNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTF 157
            +   + +++L ++ L S  S+E LSHL  + +L+L+  +++       ++  L   +T 
Sbjct: 497 TSLKMMNHVDLSHNRLTSS-SIEALSHLKGI-YLNLASNHISIILP--SLLPILSQQRTI 552

Query: 158 VLRS 161
            LR 
Sbjct: 553 NLRQ 556

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 18/137 (13%), Positives = 37/137 (27%), Gaps = 4/137 (2%)

Query: 40  FLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV--PRTL 97
            +       L     L  L L +N      +P+      KL+ L+      +       +
Sbjct: 116 GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP-TEKLKVLDFQ-NNAIHYLSKEDM 173

Query: 98  RNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTF 157
            +      L+L  +     G        +  + L+                + ++SL   
Sbjct: 174 SSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLG 233

Query: 158 VLRSCALPPINPSFICG 174
                    I+P+   G
Sbjct: 234 TFEDMDDEDISPAVFEG 250

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 47.7 bits (114), Expect = 4e-07
 Identities = 21/134 (15%), Positives = 42/134 (31%), Gaps = 6/134 (4%)

Query: 41  LKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLR--YLNLSCGAPLEVPRTLR 98
           +     P       L+ LD  NN        E + SL +     LNL+      +     
Sbjct: 141 ISSIKLPKGFPTEKLKVLDFQNNAIHYLS-KEDMSSLQQATNLSLNLNGNDIAGIEPGAF 199

Query: 99  NFSGLEYLNLENSHLFSVGSLEWLSH--LSSLRHLDLSYINLTKSRDWFQVVAKLRSLKT 156
           + +  + LN   +    V   + L +  + SL       ++               S+++
Sbjct: 200 DSAVFQSLNFGGTQNLLV-IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES 258

Query: 157 FVLRSCALPPINPS 170
             L+      I+ +
Sbjct: 259 INLQKHYFFNISSN 272

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 27/120 (22%), Positives = 42/120 (35%), Gaps = 24/120 (20%)

Query: 41  LKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV--PRTLR 98
           L      A   L  + H+DLS+N    S   E +  L  + YLNL+    + +  P  L 
Sbjct: 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSS-IEALSHLKGI-YLNLA-SNHISIILPSLLP 544

Query: 99  NFSGLEYLNLENSHLFSVGSLEWL-------------------SHLSSLRHLDLSYINLT 139
             S    +NL  + L    S  +                     +   LR + LS + L+
Sbjct: 545 ILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 60.3 bits (146), Expect = 2e-11
 Identities = 25/101 (24%), Positives = 36/101 (35%), Gaps = 5/101 (4%)

Query: 41  LKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNF 100
             G  S        L+ LDLS+N    +         S+L  LNLS     +VP+ L   
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL--P 273

Query: 101 SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKS 141
           + L  L+L  + L           L  + +L L       S
Sbjct: 274 AKLSVLDLSYNRL---DRNPSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.5 bits (118), Expect = 8e-08
 Identities = 20/101 (19%), Positives = 31/101 (30%), Gaps = 7/101 (6%)

Query: 46  SPALLKLHDLRHLDLSNNDF-GGSPIPEFI--GSLSKLRYLNLSC----GAPLEVPRTLR 98
              +     L  LDLS+N   G   +   +       L+ L L                 
Sbjct: 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA 225

Query: 99  NFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLT 139
               L+ L+L ++ L            S L  L+LS+  L 
Sbjct: 226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.4 bits (115), Expect = 3e-07
 Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 9/132 (6%)

Query: 48  ALLKLHDLRHLDLSNNDFGGS-PIPEFIGSLSKLRYL---NLSCGAPLEVPRTLRNFS-- 101
            +L +  L+ L L N +  G+ P P    +   L  L   N+S          L+ +   
Sbjct: 90  RVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKP 149

Query: 102 GLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSR--DWFQVVAKLRSLKTFVL 159
           GL+ L++  +H  +  S E +    +L  LDLS       R         K  +L+   L
Sbjct: 150 GLKVLSIAQAHSLNF-SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 160 RSCALPPINPSF 171
           R+  +   +   
Sbjct: 209 RNAGMETPSGVC 220

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.5 bits (147), Expect = 2e-11
 Identities = 32/121 (26%), Positives = 46/121 (38%), Gaps = 7/121 (5%)

Query: 44  TISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV--PRTLRNFS 101
           T+S   L L  L HLD  +++           SL  L YL++S      V         S
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS-HTHTRVAFNGIFNGLS 445

Query: 102 GLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSLKTFVLR 160
            LE L +  +        +  + L +L  LDLS   L + S   F     L SL+   + 
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN---SLSSLQVLNMA 502

Query: 161 S 161
           S
Sbjct: 503 S 503

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.9 bits (135), Expect = 7e-10
 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 8/91 (8%)

Query: 48  ALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLS----CGAPLEVPRTLRNFSGL 103
               L  L  L ++ N F  + +P+    L  L +L+LS           P    + S L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS---PTAFNSLSSL 496

Query: 104 EYLNLENSHLFSVGSLEWLSHLSSLRHLDLS 134
           + LN+ ++ L SV        L+SL+ + L 
Sbjct: 497 QVLNMASNQLKSV-PDGIFDRLTSLQKIWLH 526

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.9 bits (135), Expect = 7e-10
 Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 6/127 (4%)

Query: 46  SPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV--PRTLRNFSGL 103
           S +     +L+ LDLS  +           SLS L  L L+ G P++          S L
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILT-GNPIQSLALGAFSGLSSL 102

Query: 104 EYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCA 163
           + L    ++L S+ +   + HL +L+ L++++ NL +S    +  + L +L+   L S  
Sbjct: 103 QKLVAVETNLASLEN-FPIGHLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSNK 160

Query: 164 LPPINPS 170
           +  I  +
Sbjct: 161 IQSIYCT 167

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.3 bits (131), Expect = 3e-09
 Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 3/109 (2%)

Query: 48  ALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLS-CGAPLEVPRTLRNFSGLEYL 106
           A   L  L  L L+ N             LS L+ L              + +   L+ L
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 107 NLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSL 154
           N+ ++ + S    E+ S+L++L HLDLS   +        +V+ ++  L
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.8 bits (127), Expect = 9e-09
 Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 4/103 (3%)

Query: 54  DLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENSH 112
             ++LDLS N         F  S  +L+ L+LS      +     ++ S L  L L  + 
Sbjct: 29  STKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 113 LFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSL 154
           + S+ +L   S LSSL+ L     NL          +  L+ L
Sbjct: 88  IQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 10/118 (8%)

Query: 48  ALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLE---VPRTLRNFSGLE 104
             L L +L +LD+S+     +        LS L  L ++ G   +   +P        L 
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAF-NGIFNGLSSLEVLKMA-GNSFQENFLPDIFTELRNLT 473

Query: 105 YLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSLKTFVLRS 161
           +L+L    L  +      + LSSL+ L+++   L       F    +L SL+   L +
Sbjct: 474 FLDLSQCQLEQLSP-TAFNSLSSLQVLNMASNQLKSVPDGIFD---RLTSLQKIWLHT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 26/145 (17%), Positives = 43/145 (29%), Gaps = 8/145 (5%)

Query: 27  NLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLS 86
           NL   ++  A   +    I      L ++    L +          +      L  +N  
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCK 315

Query: 87  CGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQ 146
            G              L+ L   ++   +  S      L SL  LDLS   L+      Q
Sbjct: 316 FGQF-----PTLKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQ 367

Query: 147 VVAKLRSLKTFVLRSCALPPINPSF 171
                 SLK   L    +  ++ +F
Sbjct: 368 SDFGTTSLKYLDLSFNGVITMSSNF 392

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.3 bits (105), Expect = 7e-06
 Identities = 23/135 (17%), Positives = 46/135 (34%), Gaps = 10/135 (7%)

Query: 40  FLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV--PRTL 97
            L    +  +  L  L+ L++++N      +PE+  +L+ L +L+LS    ++      L
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS-SNKIQSIYCTDL 169

Query: 98  RNFSGLEY----LNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRS 153
           R    +      L+L  + +  +        +  L  L L   N          +  L  
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFI-QPGAFKEI-RLHKLTLRN-NFDSLNVMKTCIQGLAG 226

Query: 154 LKTFVLRSCALPPIN 168
           L+   L         
Sbjct: 227 LEVHRLVLGEFRNEG 241

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.3 bits (105), Expect = 7e-06
 Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 6/109 (5%)

Query: 47  PALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYL 106
                    +HL+L N  FG  P       L  L+ L  +         +  +   LE+L
Sbjct: 298 KDFSYNFGWQHLELVNCKFGQFPT----LKLKSLKRLTFTSNKGGNAF-SEVDLPSLEFL 352

Query: 107 NLENSHLFSVGSL-EWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSL 154
           +L  + L   G   +     +SL++LDLS+  +      F  + +L  L
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 401

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 60.6 bits (147), Expect = 2e-11
 Identities = 33/160 (20%), Positives = 54/160 (33%), Gaps = 11/160 (6%)

Query: 18  NTTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSL 77
           N    +  +NL  +    +  +     I   LL++  L+ L L+ N F      +     
Sbjct: 391 NKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN 450

Query: 78  SKLRYLNLSC------GAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHL 131
             L  L L                     S L+ L L +++L S+      SHL++LR L
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL-PPGVFSHLTALRGL 509

Query: 132 DLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSF 171
            L+   LT             +L+   +    L   NP  
Sbjct: 510 SLNSNRLT----VLSHNDLPANLEILDISRNQLLAPNPDV 545

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.7 bits (137), Expect = 4e-10
 Identities = 24/121 (19%), Positives = 40/121 (33%), Gaps = 4/121 (3%)

Query: 52  LHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLS--CGAPLEVPRTLRNFSGLEYLNLE 109
           L+    L LS N         F   L +L+ L L              RN   L  L+L 
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPF-LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 110 NSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINP 169
           +S ++ +   +    L  L  L L +  L+ +         L++L    L    +  +  
Sbjct: 82  SSKIYFL-HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL 140

Query: 170 S 170
            
Sbjct: 141 H 141

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.7 bits (137), Expect = 4e-10
 Identities = 29/126 (23%), Positives = 46/126 (36%), Gaps = 5/126 (3%)

Query: 48  ALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV--PRTLRNFSGLEY 105
           +   L  L+ L+L +     +   E   +L  LR L+L   + +    P   +    L  
Sbjct: 43  SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG-SSKIYFLHPDAFQGLFHLFE 101

Query: 106 LNLENSHLFSVG-SLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCAL 164
           L L    L        +  +L +L  LDLS  N  +S        KL SLK+    S  +
Sbjct: 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSK-NQIRSLYLHPSFGKLNSLKSIDFSSNQI 160

Query: 165 PPINPS 170
             +   
Sbjct: 161 FLVCEH 166

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 53.3 bits (128), Expect = 7e-09
 Identities = 30/134 (22%), Positives = 49/134 (36%), Gaps = 7/134 (5%)

Query: 41  LKGTISP-ALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLS---CGAPLEVPRT 96
              TI   A   L +LR LDL ++         F G L  L  L L        +     
Sbjct: 60  TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG-LFHLFELRLYFCGLSDAVLKDGY 118

Query: 97  LRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSLK 155
            RN   L  L+L  + + S+        L+SL+ +D S   +        + + + ++L 
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL-QGKTLS 177

Query: 156 TFVLRSCALPPINP 169
            F L + +L     
Sbjct: 178 FFSLAANSLYSRVS 191

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.1 bits (125), Expect = 2e-08
 Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 5/99 (5%)

Query: 48  ALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV--PRTLRNFSG--L 103
               L  L  LDLS N      +    G L+ L+ ++ S    + +     L    G  L
Sbjct: 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS-SNQIFLVCEHELEPLQGKTL 176

Query: 104 EYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSR 142
            + +L  + L+S  S++W   ++  R++ L  ++++ + 
Sbjct: 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG 215

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.3 bits (123), Expect = 3e-08
 Identities = 30/148 (20%), Positives = 54/148 (36%), Gaps = 7/148 (4%)

Query: 27  NLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIG-SLSKLRYLNL 85
           N  T D        +  + + +L+  H +       ++        F G + S +R+L+L
Sbjct: 214 NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDL 273

Query: 86  SCGAPLEV-PRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK-SRD 143
           S G    +  R       L+ LNL  + +  +   E    L +L+ L+LSY  L +    
Sbjct: 274 SHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD-EAFYGLDNLQVLNLSYNLLGELYSS 332

Query: 144 WFQVVAKLRSLKTFVLRSCALPPINPSF 171
            F     L  +    L+   +  I    
Sbjct: 333 NFY---GLPKVAYIDLQKNHIAIIQDQT 357

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 50.2 bits (120), Expect = 7e-08
 Identities = 25/143 (17%), Positives = 53/143 (37%), Gaps = 17/143 (11%)

Query: 48  ALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLS-CGAPLEVPRTLRNFSGLEYL 106
           A   L +L+ L+LS N  G      F G L K+ Y++L      +   +T +    L+ L
Sbjct: 309 AFYGLDNLQVLNLSYNLLGELYSSNFYG-LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTL 367

Query: 107 NLENSHLFSVGSLEWLSHLS--------------SLRHLDLSYINLTKSRDWFQVVAKLR 152
           +L ++ L ++  +  +  +               +   + LS   L ++ D    + ++ 
Sbjct: 368 DLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRL-ENLDILYFLLRVP 426

Query: 153 SLKTFVLRSCALPPINPSFICGW 175
            L+  +L        +       
Sbjct: 427 HLQILILNQNRFSSCSGDQTPSE 449

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.5 bits (113), Expect = 5e-07
 Identities = 28/140 (20%), Positives = 51/140 (36%), Gaps = 19/140 (13%)

Query: 46  SPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV------------ 93
                +   L  LD+S N +       F  ++SK +  +L     +              
Sbjct: 197 CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD 256

Query: 94  PRTLRNF--SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAK 150
             T      S + +L+L +  +FS+ S      L  L+ L+L+Y  + K + + F     
Sbjct: 257 QNTFAGLARSSVRHLDLSHGFVFSLNS-RVFETLKDLKVLNLAYNKINKIADEAFY---G 312

Query: 151 LRSLKTFVLRSCALPPINPS 170
           L +L+   L    L  +  S
Sbjct: 313 LDNLQVLNLSYNLLGELYSS 332

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 58.6 bits (142), Expect = 8e-11
 Identities = 21/125 (16%), Positives = 40/125 (32%), Gaps = 5/125 (4%)

Query: 48  ALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV--PRTLRNFSGLEY 105
               L  L++L+L  N +    +     +L+ L+ L +                 + L  
Sbjct: 93  WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE 152

Query: 106 LNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALP 165
           L ++   L +    + L  +  + HL L         +       L S++   LR   L 
Sbjct: 153 LEIKALSLRNY-QSQSLKSIRDIHHLTLHLSESAFLLE--IFADILSSVRYLELRDTNLA 209

Query: 166 PINPS 170
               S
Sbjct: 210 RFQFS 214

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.5 bits (134), Expect = 9e-10
 Identities = 33/127 (25%), Positives = 49/127 (38%), Gaps = 7/127 (5%)

Query: 48  ALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCG--APLEVPRTLRNFSGLEY 105
           A   L  L HLDLS+N         + G LS L+YLNL       L V     N + L+ 
Sbjct: 69  AFYSLGSLEHLDLSDNHLSSLS-SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127

Query: 106 LNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSLKTFVLRSCAL 164
           L + N   FS       + L+SL  L++  ++L        +    +R +    L     
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK---SIRDIHHLTLHLSES 184

Query: 165 PPINPSF 171
             +   F
Sbjct: 185 AFLLEIF 191

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.5 bits (134), Expect = 9e-10
 Identities = 18/126 (14%), Positives = 47/126 (37%), Gaps = 6/126 (4%)

Query: 50  LKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV--PRTLRNFSGLEYLN 107
           ++   +R L +                L K++ + +   + + +      ++   LE+L+
Sbjct: 283 VETVTIRRLHIPQFYLFYDL-STVYSLLEKVKRITVE-NSKVFLVPCSFSQHLKSLEFLD 340

Query: 108 LENSHLFSV--GSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALP 165
           L  + +      +        SL+ L LS  +L   +   +++  L++L +  +      
Sbjct: 341 LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400

Query: 166 PINPSF 171
           P+  S 
Sbjct: 401 PMPDSC 406

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 31/125 (24%), Positives = 48/125 (38%), Gaps = 15/125 (12%)

Query: 48  ALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPL-EVPRTLRNFSGLEYL 106
            LL L +L  LD+S N F   P+P+      K+R+LNLS    +  V   +     LE L
Sbjct: 382 ILLTLKNLTSLDISRNTF--HPMPDSCQWPEKMRFLNLS-STGIRVVKTCI--PQTLEVL 436

Query: 107 NLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPP 166
           ++ N++L S         L  L+ L +S   L          +    L    +    L  
Sbjct: 437 DVSNNNLDSFS-----LFLPRLQELYISRNKLKT----LPDASLFPVLLVMKISRNQLKS 487

Query: 167 INPSF 171
           +    
Sbjct: 488 VPDGI 492

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 53.2 bits (128), Expect = 6e-09
 Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 6/120 (5%)

Query: 40  FLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSC----GAPLEVPR 95
           +L   +S     L  ++ + + N+     P       L  L +L+LS        L+   
Sbjct: 297 YLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQH-LKSLEFLDLSENLMVEEYLKNSA 355

Query: 96  TLRNFSGLEYLNLENSHLFSVGSL-EWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSL 154
               +  L+ L L  +HL S+    E L  L +L  LD+S        D  Q   K+R L
Sbjct: 356 CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFL 415

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 53.2 bits (128), Expect = 7e-09
 Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 6/111 (5%)

Query: 48  ALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV--PRTLRNFSGLEY 105
            L    +L+ L L ++        +   SL  L +L+LS    L           S L+Y
Sbjct: 45  DLRACANLQVLILKSSRINTIE-GDAFYSLGSLEHLDLS-DNHLSSLSSSWFGPLSSLKY 102

Query: 106 LNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKS--RDWFQVVAKLRSL 154
           LNL  +   ++G      +L++L+ L +  +       R  F  +  L  L
Sbjct: 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL 153

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 5/104 (4%)

Query: 54  DLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENSH 112
            ++ LDLS N          + + + L+ L L       +      +   LE+L+L ++H
Sbjct: 27  AMKSLDLSFNKITYIG-HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85

Query: 113 LFSVGSLEWLSHLSSLRHLDLSYINLTK--SRDWFQVVAKLRSL 154
           L S+ S  W   LSSL++L+L             F  +  L++L
Sbjct: 86  LSSL-SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 18/113 (15%), Positives = 35/113 (30%), Gaps = 11/113 (9%)

Query: 44  TISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGL 103
            +  +      +R L+LS+       +         L  L++S          L     L
Sbjct: 401 PMPDSCQWPEKMRFLNLSSTGI--RVVKT--CIPQTLEVLDVSNNNLDSFSLFLPR---L 453

Query: 104 EYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSLK 155
           + L +  + L    +L   S    L  + +S   L       F  +  L+ + 
Sbjct: 454 QELYISRNKL---KTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIW 503

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.5 bits (137), Expect = 1e-10
 Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 4/89 (4%)

Query: 47  PALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYL 106
           P L  L  L  LD+S++    S +   I +L K+  ++LS    +     L+    L+ L
Sbjct: 106 PNLSGLTSLTLLDISHSAHDDSIL-TKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSL 164

Query: 107 NLENSHLFSVGSLEWLSHLSSLRHLDLSY 135
           N++      V     +     L  L    
Sbjct: 165 NIQFDG---VHDYRGIEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.6 bits (132), Expect = 8e-10
 Identities = 18/118 (15%), Positives = 42/118 (35%), Gaps = 9/118 (7%)

Query: 45  ISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLS-CGAPLEVPRTLRNFSGL 103
            +P +  L +L  L +   D     IP  +  L+ L  L++S       +   +     +
Sbjct: 81  YNP-ISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDISHSAHDDSILTKINTLPKV 138

Query: 104 EYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRS 161
             ++L  +    +  +  L  L  L+ L++ +  +      ++ +     L      S
Sbjct: 139 NSIDLSYNGA--ITDIMPLKTLPELKSLNIQFDGVHD----YRGIEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.6 bits (119), Expect = 4e-08
 Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 8/115 (6%)

Query: 51  KLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLS-CGAPLEVPRTLRNFSGLEYLNLE 109
             H+++ L ++N           I  LS L  L +       +    L   + L  L++ 
Sbjct: 64  YAHNIKDLTINNIHATNY---NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120

Query: 110 NSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCAL 164
           +S       L  ++ L  +  +DLSY            +  L  LK+  ++   +
Sbjct: 121 HSAH-DDSILTKINTLPKVNSIDLSYNGAITD---IMPLKTLPELKSLNIQFDGV 171

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 23/118 (19%), Positives = 47/118 (39%), Gaps = 9/118 (7%)

Query: 45  ISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLE 104
           I+ A  +++ L ++ L+N +   + +   I     ++ L ++          +   S LE
Sbjct: 38  ITEA--QMNSLTYITLANINV--TDL-TGIEYAHNIKDLTIN-NIHATNYNPISGLSNLE 91

Query: 105 YLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSC 162
            L +    + S   +  LS L+SL  LD+S+     S      +  L  + +  L   
Sbjct: 92  RLRIMGKDVTSDK-IPNLSGLTSLTLLDISHSAHDDSI--LTKINTLPKVNSIDLSYN 146

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.2 bits (139), Expect = 2e-10
 Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 10/126 (7%)

Query: 44  TISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGL 103
           T   AL  L +LR L L+ ++         + +L+K+  LNL     L     L N +GL
Sbjct: 101 TDISALQNLTNLRELYLNEDNISDIS---PLANLTKMYSLNLGANHNLSDLSPLSNMTGL 157

Query: 104 EYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCA 163
            YL +  S +     +  +++L+ L  L L+Y  +         +A L SL  F      
Sbjct: 158 NYLTVTESKV---KDVTPIANLTDLYSLSLNYNQIED----ISPLASLTSLHYFTAYVNQ 210

Query: 164 LPPINP 169
           +  I P
Sbjct: 211 ITDITP 216

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 53.7 bits (130), Expect = 3e-09
 Identities = 21/130 (16%), Positives = 45/130 (34%), Gaps = 11/130 (8%)

Query: 47  PALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYL 106
             L  L  L +     N          + ++++L  L +     +     L N S L +L
Sbjct: 193 SPLASLTSLHYFTAYVNQITDIT---PVANMTRLNSLKIG-NNKITDLSPLANLSQLTWL 248

Query: 107 NLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPP 166
            +  + +     +  +  L+ L+ L++    ++       V+  L  L +  L +  L  
Sbjct: 249 EIGTNQI---SDINAVKDLTKLKMLNVGSNQISD----ISVLNNLSQLNSLFLNNNQLGN 301

Query: 167 INPSFICGWE 176
            +   I G  
Sbjct: 302 EDMEVIGGLT 311

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 53.3 bits (129), Expect = 5e-09
 Identities = 20/123 (16%), Positives = 45/123 (36%), Gaps = 10/123 (8%)

Query: 47  PALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYL 106
             +  L +L +L+L+ N          + +L KL  L +     +     L+N + L  L
Sbjct: 60  QGIEYLTNLEYLNLNGNQITDIS---PLSNLVKLTNLYIG-TNKITDISALQNLTNLREL 115

Query: 107 NLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPP 166
            L   ++     +  L++L+ +  L+L   +           + +  L    +    +  
Sbjct: 116 YLNEDNI---SDISPLANLTKMYSLNLGANHNLSDLSPL---SNMTGLNYLTVTESKVKD 169

Query: 167 INP 169
           + P
Sbjct: 170 VTP 172

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.4 bits (124), Expect = 2e-08
 Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 7/95 (7%)

Query: 47  PALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLS-CGAPLEVPRTLRNFSGLEY 105
            A+  L  L+ L++ +N          + +LS+L  L L+      E    +   + L  
Sbjct: 259 NAVKDLTKLKMLNVGSNQISD---ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315

Query: 106 LNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK 140
           L L  +H+     +  L+ LS +   D +   + K
Sbjct: 316 LFLSQNHI---TDIRPLASLSKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 50.6 bits (122), Expect = 4e-08
 Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 11/121 (9%)

Query: 49  LLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNL 108
              L +     L                L  +  L ++ G  +   + +   + LEYLNL
Sbjct: 18  DADLAEGIRAVLQKASVTD---VVTQEELESITKLVVA-GEKVASIQGIEYLTNLEYLNL 73

Query: 109 ENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPIN 168
             + +     +  LS+L  L +L +    +T        +  L +L+   L    +  I+
Sbjct: 74  NGNQI---TDISPLSNLVKLTNLYIGTNKITD----ISALQNLTNLRELYLNEDNISDIS 126

Query: 169 P 169
           P
Sbjct: 127 P 127

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 50.6 bits (122), Expect = 4e-08
 Identities = 25/121 (20%), Positives = 47/121 (38%), Gaps = 11/121 (9%)

Query: 44  TISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGL 103
           T      +L  +  L ++          + I  L+ L YLNL+ G  +     L N   L
Sbjct: 35  TDVVTQEELESITKLVVAGEKVAS---IQGIEYLTNLEYLNLN-GNQITDISPLSNLVKL 90

Query: 104 EYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCA 163
             L +  + +     +  L +L++LR L L+  N++        +A L  + +  L +  
Sbjct: 91  TNLYIGTNKIT---DISALQNLTNLRELYLNEDNISDISP----LANLTKMYSLNLGANH 143

Query: 164 L 164
            
Sbjct: 144 N 144

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 50.2 bits (121), Expect = 6e-08
 Identities = 20/126 (15%), Positives = 47/126 (37%), Gaps = 11/126 (8%)

Query: 44  TISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGL 103
           +    L  +  L +L ++ +          I +L+ L  L+L+    +E    L + + L
Sbjct: 146 SDLSPLSNMTGLNYLTVTESKVKDVT---PIANLTDLYSLSLN-YNQIEDISPLASLTSL 201

Query: 104 EYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCA 163
            Y     + +     +  +++++ L  L +    +T        +A L  L    + +  
Sbjct: 202 HYFTAYVNQI---TDITPVANMTRLNSLKIGNNKITD----LSPLANLSQLTWLEIGTNQ 254

Query: 164 LPPINP 169
           +  IN 
Sbjct: 255 ISDINA 260

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 57.1 bits (138), Expect = 3e-10
 Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 7/110 (6%)

Query: 48  ALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV--PRTLRNFSGLEY 105
           A   L  LR L L NN     P   F   +  L  L+L     LE            L+Y
Sbjct: 142 AFEYLSKLRELWLRNNPIESIPSYAFNR-VPSLMRLDLGELKKLEYISEGAFEGLFNLKY 200

Query: 106 LNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSL 154
           LNL   ++  + +L   + L  L  L++S  +  +     F  ++ L+ L
Sbjct: 201 LNLGMCNIKDMPNL---TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKL 247

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 8/110 (7%)

Query: 48  ALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV--PRTLRNFSGLEY 105
           A   L +L++L+L   +     +P     L  L  L +S G       P +    S L+ 
Sbjct: 191 AFEGLFNLKYLNLGMCNI--KDMPNLTP-LVGLEELEMS-GNHFPEIRPGSFHGLSSLKK 246

Query: 106 LNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSL 154
           L + NS +  +        L+SL  L+L++ NL+    D F  +  L  L
Sbjct: 247 LWVMNSQVSLI-ERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVEL 295

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 24/103 (23%), Positives = 37/103 (35%), Gaps = 4/103 (3%)

Query: 54  DLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV-PRTLRNFSGLEYLNLENSH 112
           + R+L+L  N+        F   L  L  L L   +  ++        + L  L L ++ 
Sbjct: 76  NTRYLNLMENNIQMIQADTFRH-LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 113 LFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSL 154
           L  + S     +LS LR L L    +       F  V  L  L
Sbjct: 135 LTVIPS-GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL 176

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 32/113 (28%), Positives = 42/113 (37%), Gaps = 11/113 (9%)

Query: 48  ALLKLHDLRHLDLSNNDFGGSPIPE--FIGSLSKLRYLNLSCGAPLEV--PRTLRNFSGL 103
               LH L  L L  N      I    F G L+ L  L L     L V         S L
Sbjct: 94  TFRHLHHLEVLQLGRNSI--RQIEVGAFNG-LASLNTLELF-DNWLTVIPSGAFEYLSKL 149

Query: 104 EYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYIN-LTK-SRDWFQVVAKLRSL 154
             L L N+ + S+ S    + + SL  LDL  +  L   S   F+ +  L+ L
Sbjct: 150 RELWLRNNPIESIPS-YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL 201

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 30/116 (25%), Positives = 41/116 (35%), Gaps = 10/116 (8%)

Query: 44  TISP-ALLKLHDLRHLDLSNNDFGGSPIPE--FIGSLSKLRYLNLSCGAPLEV--PRTLR 98
            I   A   L  L  L+L +N    + IP   F   LSKLR L L    P+E        
Sbjct: 113 QIEVGAFNGLASLNTLELFDNWL--TVIPSGAFEY-LSKLRELWLR-NNPIESIPSYAFN 168

Query: 99  NFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSL 154
               L  L+L         S      L +L++L+L   N+         +  L  L
Sbjct: 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTPLVGLEEL 223

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.5 bits (137), Expect = 4e-10
 Identities = 24/139 (17%), Positives = 53/139 (38%), Gaps = 19/139 (13%)

Query: 44  TISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGL 103
                  +L  L+H+ +         +P+ +   + L  L L+      +P ++ + + L
Sbjct: 95  QFPDQAFRLSHLQHMTIDAAGL--MELPDTMQQFAGLETLTLARNPLRALPASIASLNRL 152

Query: 104 EYLNLEN--------SHLFSVGSLEWLSHLSSLRHLDLSYINLT---KSRDWFQVVAKLR 152
             L++            L S  +      L +L+ L L +  +     S      +A L+
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS------IANLQ 206

Query: 153 SLKTFVLRSCALPPINPSF 171
           +LK+  +R+  L  + P+ 
Sbjct: 207 NLKSLKIRNSPLSALGPAI 225

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.8 bits (130), Expect = 3e-09
 Identities = 25/131 (19%), Positives = 42/131 (32%), Gaps = 20/131 (15%)

Query: 44  TISPALLKLHDLRHLDLSNN--------DFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR 95
            +  ++  L+ LR L +               +        L  L+ L L       +P 
Sbjct: 141 ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA 200

Query: 96  TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYIN----LTKSRDWFQVVAKL 151
           ++ N   L+ L + NS L ++     + HL  L  LDL                      
Sbjct: 201 SIANLQNLKSLKIRNSPLSAL--GPAIHHLPKLEELDLRGCTALRNYPPI------FGGR 252

Query: 152 RSLKTFVLRSC 162
             LK  +L+ C
Sbjct: 253 APLKRLILKDC 263

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 47.2 bits (113), Expect = 6e-07
 Identities = 15/114 (13%), Positives = 36/114 (31%), Gaps = 5/114 (4%)

Query: 49  LLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNL 108
               ++ +    +      +       +      L L      + P      S L+++ +
Sbjct: 52  QANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTI 111

Query: 109 ENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSC 162
           + + L  +   + +   + L  L L+   L          A L  L+   +R+C
Sbjct: 112 DAAGLMEL--PDTMQQFAGLETLTLARNPLRALPASI---ASLNRLRELSIRAC 160

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 47.2 bits (113), Expect = 6e-07
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 51  KLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLE-VPRTLRNFSGLEYLNLE 109
            L +L+ L + N+    S +   I  L KL  L+L     L   P      + L+ L L+
Sbjct: 204 NLQNLKSLKIRNSPL--SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK 261

Query: 110 NSHLFSVGSL-EWLSHLSSLRHLDLSY 135
           +       +L   +  L+ L  LDL  
Sbjct: 262 DCSNLL--TLPLDIHRLTQLEKLDLRG 286

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 13/111 (11%), Positives = 32/111 (28%), Gaps = 9/111 (8%)

Query: 55  LRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLF 114
             +L    +    + +  +   LS+ +    +            N +  +        L 
Sbjct: 14  RENLYFQGS----TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALK 69

Query: 115 SVGSLEWLSHLSSLRHLDLSYINLTKSRDWF-QVVAKLRSLKTFVLRSCAL 164
           +   L   +       L+L  + L +    F     +L  L+   + +  L
Sbjct: 70  ATADLLEDATQPGRVALELRSVPLPQ----FPDQAFRLSHLQHMTIDAAGL 116

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 55.6 bits (134), Expect = 8e-10
 Identities = 22/151 (14%), Positives = 48/151 (31%), Gaps = 26/151 (17%)

Query: 41  LKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLS--------CGAPL- 91
           +             +++LDL  N+       E   S   L +LNL               
Sbjct: 132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFA 191

Query: 92  -------------EVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSY--I 136
                         +    ++ +G+ +++L N+ L  +     L    +L H DL     
Sbjct: 192 KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA--LRFSQNLEHFDLRGNGF 249

Query: 137 NLTKSRDWFQVVAKLRSLKTFVLRSCALPPI 167
           +    RD+F    +++++    ++       
Sbjct: 250 HCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.8 bits (124), Expect = 2e-08
 Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 8/100 (8%)

Query: 41  LKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNF 100
           LK  ++       +++ LDLS N          +   +KL  LNLS    L     L + 
Sbjct: 22  LKQALASLRQSAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLS-SNVLYETLDLESL 79

Query: 101 SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK 140
           S L  L+L N+++        L    S+  L  +  N+++
Sbjct: 80  STLRTLDLNNNYVQE------LLVGPSIETLHAANNNISR 113

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 50.6 bits (121), Expect = 4e-08
 Identities = 22/124 (17%), Positives = 47/124 (37%), Gaps = 10/124 (8%)

Query: 47  PALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYL 106
             L  L  LR LDL+NN        + +     +  L+ +      V        G + +
Sbjct: 74  LDLESLSTLRTLDLNNNYV------QELLVGPSIETLHAANNNISRVS--CSRGQGKKNI 125

Query: 107 NLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPP 166
            L N+ +  +  L+     S +++LDL    +    ++ ++ A   +L+   L+   +  
Sbjct: 126 YLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDTV-NFAELAASSDTLEHLNLQYNFIYD 183

Query: 167 INPS 170
           +   
Sbjct: 184 VKGQ 187

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 50.2 bits (120), Expect = 7e-08
 Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 14/121 (11%)

Query: 52  LHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV--PRTLRNFSGLEYLNLE 109
            +  +   ++++    +       S   ++ L+LS G PL       L  F+ LE LNL 
Sbjct: 9   GNRYKIEKVTDSSLKQAL-ASLRQSAWNVKELDLS-GNPLSQISAADLAPFTKLELLNLS 66

Query: 110 NSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINP 169
           ++ L+       L  LS+LR LDL+   + +       +    S++T    +  +  ++ 
Sbjct: 67  SNVLYETLD---LESLSTLRTLDLNNNYVQE-------LLVGPSIETLHAANNNISRVSC 116

Query: 170 S 170
           S
Sbjct: 117 S 117

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.5 bits (105), Expect = 6e-06
 Identities = 16/115 (13%), Positives = 31/115 (26%), Gaps = 5/115 (4%)

Query: 44  TISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGL 103
            I  AL    +L H DL  N F    + +F     +++ +       L   +     +  
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT-GQNEEECTVP 286

Query: 104 EYLNLENSHL--FSVGSLEWLSHL--SSLRHLDLSYINLTKSRDWFQVVAKLRSL 154
              +              + L  L       L        +     +  A+ R +
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREI 341

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 15/86 (17%), Positives = 40/86 (46%), Gaps = 3/86 (3%)

Query: 70  IPEFIGSLSKLRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSL 128
           I E   + ++ +   ++  +  +      ++   ++ L+L  + L  + +   L+  + L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISA-ADLAPFTKL 60

Query: 129 RHLDLSYINLTKSRDWFQVVAKLRSL 154
             L+LS   L ++ D  + ++ LR+L
Sbjct: 61  ELLNLSSNVLYETLD-LESLSTLRTL 85

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 23/113 (20%), Positives = 43/113 (38%), Gaps = 5/113 (4%)

Query: 44  TISPALLK-LHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSG 102
            +   +   L ++  +++  N    S          KL YL +S      +P+ L     
Sbjct: 137 KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL--PET 194

Query: 103 LEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSL 154
           L  L+L+++ + ++  LE L   S L  L L +  +          +  LR L
Sbjct: 195 LNELHLDHNKIQAI-ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLREL 246

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 22/117 (18%), Positives = 39/117 (33%), Gaps = 13/117 (11%)

Query: 48  ALLKLHDLRHLDLSNNDFGGSPIPE--FIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEY 105
            LL+   L  L L +N      I        L  LR L+L       VP  L +   L+ 
Sbjct: 212 DLLRYSKLYRLGLGHNQI--RMIENGSLSF-LPTLRELHLDNNKLSRVPAGLPDLKLLQV 268

Query: 106 LNLENSHLFSVGS-----LEWLSHLSSLRHLDLSYINLTK---SRDWFQVVAKLRSL 154
           + L  +++  VG      + +    +    + L    +         F+ V    ++
Sbjct: 269 VYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAI 325

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 8/96 (8%)

Query: 48  ALLKLHDLRHLDLSNNDFGGSPIPE--FIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEY 105
               L  L  L L NN    S I E  F   L KL+ L +S    +E+P  L   S L  
Sbjct: 73  DFKGLQHLYALVLVNNKI--SKIHEKAFSP-LRKLQKLYISKNHLVEIPPNL--PSSLVE 127

Query: 106 LNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKS 141
           L + ++ +  V      S L ++  +++    L  S
Sbjct: 128 LRIHDNRIRKVPK-GVFSGLRNMNCIEMGGNPLENS 162

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 7/103 (6%)

Query: 54  DLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV-PRTLRNFSGLEYLNLENSH 112
           D   LDL NND       +F G L  L  L L      ++  +       L+ L +  +H
Sbjct: 55  DTTLLDLQNNDISELRKDDFKG-LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 113 LFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSL 154
           L  +      +  SSL  L +    + K  +  F  +  +  +
Sbjct: 114 LVEIPP----NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCI 152

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 37.7 bits (88), Expect = 9e-04
 Identities = 20/101 (19%), Positives = 31/101 (30%), Gaps = 10/101 (9%)

Query: 44  TISP-ALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV--PRTLRNF 100
            I   A   L  L+ L +S N      IP      S L  L +     +           
Sbjct: 92  KIHEKAFSPLRKLQKLYISKNHL--VEIPP--NLPSSLVELRIH-DNRIRKVPKGVFSGL 146

Query: 101 SGLEYLNLENSHLFSVG-SLEWLSHLSSLRHLDLSYINLTK 140
             +  + +  + L + G        L  L +L +S   LT 
Sbjct: 147 RNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 55.1 bits (132), Expect = 2e-09
 Identities = 30/127 (23%), Positives = 46/127 (36%), Gaps = 16/127 (12%)

Query: 45  ISPALLKLHDLRHLDLSNNDFGGSPIP--EFIGSLSKLRYLNLSCGAPLEVPRTLRNFSG 102
           I P L  L +L  L L  N      I     +  L KL+ L+L     +     L +   
Sbjct: 80  IKP-LTNLKNLGWLFLDEN-----KIKDLSSLKDLKKLKSLSLE-HNGISDINGLVHLPQ 132

Query: 103 LEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSC 162
           LE L L N+ +     +  LS L+ L  L L    ++        +A L  L+   L   
Sbjct: 133 LESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQISD----IVPLAGLTKLQNLYLSKN 185

Query: 163 ALPPINP 169
            +  +  
Sbjct: 186 HISDLRA 192

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 51.6 bits (123), Expect = 2e-08
 Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 13/115 (11%)

Query: 44  TISPALLKLHDLRHLDLSNNDFGGSPI--PEFIGSLSKLRYLNLSCGAPLEVPRTLRNFS 101
            I+  L+ L  L  L L NN      I     +  L+KL  L+L     +     L   +
Sbjct: 123 DING-LVHLPQLESLYLGNN-----KITDITVLSRLTKLDTLSLE-DNQISDIVPLAGLT 175

Query: 102 GLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLT-KSRDWFQVVAKLRSLK 155
            L+ L L  +H+     L  L+ L +L  L+L       K  +    +    ++K
Sbjct: 176 KLQNLYLSKNHI---SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 227

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 50.9 bits (121), Expect = 4e-08
 Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 15/118 (12%)

Query: 49  LLKLHDLRHLDLSNNDFGGSPIPEF--IGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYL 106
           +  L ++  L L+ N      + +   + +L  L +L L     ++   +L++   L+ L
Sbjct: 61  IQYLPNVTKLFLNGNK-----LTDIKPLTNLKNLGWLFLD-ENKIKDLSSLKDLKKLKSL 114

Query: 107 NLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCAL 164
           +LE++ +     +  L HL  L  L L    +T       V+++L  L T  L    +
Sbjct: 115 SLEHNGI---SDINGLVHLPQLESLYLGNNKITD----ITVLSRLTKLDTLSLEDNQI 165

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.0 bits (98), Expect = 5e-05
 Identities = 16/117 (13%), Positives = 42/117 (35%), Gaps = 15/117 (12%)

Query: 55  LRHLDLSNNDFGGSPIPEFIG--SLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSH 112
           +      +      PI +     + ++    NL     +    T    + ++ +   NS 
Sbjct: 1   MGETITVST-----PIKQIFPDDAFAETIKDNLK-KKSVTDAVTQNELNSIDQIIANNSD 54

Query: 113 LFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINP 169
           +    S++ + +L ++  L L+   LT      + +  L++L    L    +  ++ 
Sbjct: 55  I---KSVQGIQYLPNVTKLFLNGNKLTD----IKPLTNLKNLGWLFLDENKIKDLSS 104

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 22/131 (16%), Positives = 46/131 (35%), Gaps = 26/131 (19%)

Query: 48  ALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLS--------CGAPL-------- 91
                  +++LDL  N+       E   S   L +LNL                      
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDL 198

Query: 92  ------EVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSY--INLTKSRD 143
                  +    ++ +G+ +++L N+ L  +   + L    +L H DL     +    RD
Sbjct: 199 SSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE--KALRFSQNLEHFDLRGNGFHCGTLRD 256

Query: 144 WFQVVAKLRSL 154
           +F    +++++
Sbjct: 257 FFSKNQRVQTV 267

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 18/116 (15%), Positives = 42/116 (36%), Gaps = 3/116 (2%)

Query: 47  PALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYL 106
              +    L+ LDLS+N    + +     S + + +++L     + + + LR    LE+ 
Sbjct: 185 KGQVVFAKLKTLDLSSNKL--AFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHF 242

Query: 107 NLENSHLFSVGSLEWLSHLSSLRHLDLSYI-NLTKSRDWFQVVAKLRSLKTFVLRS 161
           +L  +        ++ S    ++ +    +  LT   +    V  L     +    
Sbjct: 243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCED 298

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.8 bits (122), Expect = 3e-08
 Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 8/100 (8%)

Query: 41  LKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNF 100
           LK  ++       +++ LDLS N          +   +KL  LNLS    L     L + 
Sbjct: 22  LKQALASLRQSAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLS-SNVLYETLDLESL 79

Query: 101 SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK 140
           S L  L+L N+++        L    S+  L  +  N+++
Sbjct: 80  STLRTLDLNNNYVQE------LLVGPSIETLHAANNNISR 113

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.0 bits (120), Expect = 6e-08
 Identities = 27/128 (21%), Positives = 52/128 (40%), Gaps = 14/128 (10%)

Query: 45  ISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV--PRTLRNFSG 102
           I       +  +   ++++    +       S   ++ L+LS G PL       L  F+ 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQAL-ASLRQSAWNVKELDLS-GNPLSQISAADLAPFTK 59

Query: 103 LEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSC 162
           LE LNL ++ L+       L  LS+LR LDL+   + +       +    S++T    + 
Sbjct: 60  LELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQE-------LLVGPSIETLHAANN 109

Query: 163 ALPPINPS 170
            +  ++ S
Sbjct: 110 NISRVSCS 117

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 47.7 bits (114), Expect = 4e-07
 Identities = 25/125 (20%), Positives = 45/125 (36%), Gaps = 9/125 (7%)

Query: 48  ALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRNFSGLEYL 106
            LL    +  L  +NN+                + + L+      +        S ++YL
Sbjct: 94  ELLVGPSIETLHAANNNISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL 149

Query: 107 NLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPP 166
           +L+ + + +V   E  +   +L HL+L Y  +       +       LKT  L S  L  
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD----VKGQVVFAKLKTLDLSSNKLAF 205

Query: 167 INPSF 171
           + P F
Sbjct: 206 MGPEF 210

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 54.4 bits (131), Expect = 3e-09
 Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 9/111 (8%)

Query: 48  ALLKLHDLRHLDLSNNDFGGSPIPEFI-GSLSKLRYLNLSCGAPLEV--PRTLRNFSGLE 104
           A + L  L+ L L NN      IP +    +  LR L+L     L           S L 
Sbjct: 131 AFVYLSKLKELWLRNNPI--ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR 188

Query: 105 YLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSL 154
           YLNL   +L  + +   L+ L  L  LDLS  +L+      FQ +  L+ L
Sbjct: 189 YLNLAMCNLREIPN---LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKL 236

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 8/110 (7%)

Query: 48  ALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV--PRTLRNFSGLEY 105
           A   L +LR+L+L+  +     IP     L KL  L+LS G  L    P + +    L+ 
Sbjct: 180 AFEGLSNLRYLNLAMCNL--REIPNLTP-LIKLDELDLS-GNHLSAIRPGSFQGLMHLQK 235

Query: 106 LNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSL 154
           L +  S +  +       +L SL  ++L++ NLT    D F  +  L  +
Sbjct: 236 LWMIQSQIQVI-ERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERI 284

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.8 bits (114), Expect = 4e-07
 Identities = 33/110 (30%), Positives = 47/110 (42%), Gaps = 5/110 (4%)

Query: 48  ALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRNFSGLEYL 106
           +   L  L  L LS N      I  F G L+ L  L L       +P       S L+ L
Sbjct: 83  SFKHLRHLEILQLSRNHIRTIEIGAFNG-LANLNTLELFDNRLTTIPNGAFVYLSKLKEL 141

Query: 107 NLENSHLFSVGSLEWLSHLSSLRHLDLSYIN-LTK-SRDWFQVVAKLRSL 154
            L N+ + S+ S    + + SLR LDL  +  L+  S   F+ ++ LR L
Sbjct: 142 WLRNNPIESIPS-YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL 190

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.1 bits (112), Expect = 7e-07
 Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 4/103 (3%)

Query: 54  DLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENSH 112
           + R L+L  N      +  F   L  L  L LS      +        + L  L L ++ 
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKH-LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 113 LFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSL 154
           L ++ +     +LS L+ L L    +       F  +  LR L
Sbjct: 124 LTTIPN-GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL 165

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 5/90 (5%)

Query: 47  PALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV--PRTLRNFSGLE 104
           P L  L  L  LDLS N         F G L  L+ L +   + ++V       N   L 
Sbjct: 201 PNLTPLIKLDELDLSGNHLSAIRPGSFQG-LMHLQKLWMI-QSQIQVIERNAFDNLQSLV 258

Query: 105 YLNLENSHLFSVGSLEWLSHLSSLRHLDLS 134
            +NL +++L  +   +  + L  L  + L 
Sbjct: 259 EINLAHNNLTLL-PHDLFTPLHHLERIHLH 287

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 54.2 bits (131), Expect = 3e-09
 Identities = 24/121 (19%), Positives = 48/121 (39%), Gaps = 12/121 (9%)

Query: 44  TISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGL 103
           T    L  L +L  L+LS+N          +  L+ L+ L+      +   + L N + L
Sbjct: 125 TDIDPLKNLTNLNRLELSSNTISD---ISALSGLTSLQQLSFGNQ--VTDLKPLANLTTL 179

Query: 104 EYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCA 163
           E L++ ++ +     +  L+ L++L  L  +   ++        +  L +L    L    
Sbjct: 180 ERLDISSNKV---SDISVLAKLTNLESLIATNNQISD----ITPLGILTNLDELSLNGNQ 232

Query: 164 L 164
           L
Sbjct: 233 L 233

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.8 bits (130), Expect = 3e-09
 Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 11/113 (9%)

Query: 47  PALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYL 106
             +  L++L  ++ SNN          + +L+KL  + ++    +     L N + L  L
Sbjct: 62  DGVEYLNNLTQINFSNNQLTDIT---PLKNLTKLVDILMN-NNQIADITPLANLTNLTGL 117

Query: 107 NLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVL 159
            L N+ +     ++ L +L++L  L+LS   ++        ++ L SL+    
Sbjct: 118 TLFNNQI---TDIDPLKNLTNLNRLELSSNTISD----ISALSGLTSLQQLSF 163

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.1 bits (123), Expect = 3e-08
 Identities = 22/121 (18%), Positives = 44/121 (36%), Gaps = 11/121 (9%)

Query: 44  TISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGL 103
           T + +   L  +  L             + +  L+ L  +N S    L     L+N + L
Sbjct: 37  TDTVSQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFS-NNQLTDITPLKNLTKL 92

Query: 104 EYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCA 163
             + + N+ +     +  L++L++L  L L    +T        +  L +L    L S  
Sbjct: 93  VDILMNNNQI---ADITPLANLTNLTGLTLFNNQITDI----DPLKNLTNLNRLELSSNT 145

Query: 164 L 164
           +
Sbjct: 146 I 146

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.7 bits (122), Expect = 4e-08
 Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 11/123 (8%)

Query: 47  PALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYL 106
             L  L +L  L L+ N          + SL+ L  L+L+    +     L   + L  L
Sbjct: 215 TPLGILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLA-NNQISNLAPLSGLTKLTEL 270

Query: 107 NLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPP 166
            L  + +    ++  L+ L++L +L+L+   L         ++ L++L    L    +  
Sbjct: 271 KLGANQI---SNISPLAGLTALTNLELNENQLED----ISPISNLKNLTYLTLYFNNISD 323

Query: 167 INP 169
           I+P
Sbjct: 324 ISP 326

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.6 bits (119), Expect = 9e-08
 Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 7/94 (7%)

Query: 47  PALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYL 106
             +  L +L +L L  N+         + SL+KL+ L       +    +L N + + +L
Sbjct: 303 SPISNLKNLTYLTLYFNNISDI---SPVSSLTKLQRLFFY-NNKVSDVSSLANLTNINWL 358

Query: 107 NLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK 140
           +  ++ +     L  L++L+ +  L L+    T 
Sbjct: 359 SAGHNQI---SDLTPLANLTRITQLGLNDQAWTN 389

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 17/123 (13%), Positives = 40/123 (32%), Gaps = 11/123 (8%)

Query: 47  PALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYL 106
                L +     L   +   +        L ++  L       ++    +   + L  +
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTV---SQTDLDQVTTLQAD-RLGIKSIDGVEYLNNLTQI 73

Query: 107 NLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPP 166
           N  N+ L     +  L +L+ L  + ++   +         +A L +L    L +  +  
Sbjct: 74  NFSNNQL---TDITPLKNLTKLVDILMNNNQIAD----ITPLANLTNLTGLTLFNNQITD 126

Query: 167 INP 169
           I+P
Sbjct: 127 IDP 129

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.4 bits (116), Expect = 2e-07
 Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 11/121 (9%)

Query: 44  TISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGL 103
           T    L  L  L  LD+S+N          +  L+ L  L  +    +     L   + L
Sbjct: 168 TDLKPLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIAT-NNQISDITPLGILTNL 223

Query: 104 EYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCA 163
           + L+L  + L  +G+   L+ L++L  LDL+   ++        ++ L  L    L +  
Sbjct: 224 DELSLNGNQLKDIGT---LASLTNLTDLDLANNQISNLAP----LSGLTKLTELKLGANQ 276

Query: 164 L 164
           +
Sbjct: 277 I 277

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.1 bits (97), Expect = 7e-05
 Identities = 13/97 (13%), Positives = 35/97 (36%), Gaps = 13/97 (13%)

Query: 47  PALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSC----GAPLEVPRTLRNFSG 102
            +L  L ++  L   +N          + +L+++  L L+      AP+         + 
Sbjct: 347 SSLANLTNINWLSAGHNQISDLT---PLANLTRITQLGLNDQAWTNAPVNY------KAN 397

Query: 103 LEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLT 139
           +   N   +   ++ +   +S   S    D+++   +
Sbjct: 398 VSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPS 434

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 53.2 bits (127), Expect = 7e-09
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 3/105 (2%)

Query: 47  PALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYL 106
             L +L  + HLDLS+N      +P  + +L  L  L  S    LE    + N   L+ L
Sbjct: 457 CHLEQLLLVTHLDLSHNRL--RALPPALAALRCLEVLQAS-DNALENVDGVANLPRLQEL 513

Query: 107 NLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKL 151
            L N+ L    +++ L     L  L+L   +L +     + +A++
Sbjct: 514 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 8/115 (6%)

Query: 44  TISPALLKLHDLRHLDLSNNDFGGSPIPEF-IGSLSKLRYLNLSCGAPLEV--PRTLRNF 100
           T++P  L   +L  L +++ +   + +P   +  L  LR+LNLS   P+       L   
Sbjct: 215 TMTPNCLYGLNLTSLSITHCNL--TAVPYLAVRHLVYLRFLNLS-YNPISTIEGSMLHEL 271

Query: 101 SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSL 154
             L+ + L    L  V        L+ LR L++S   LT      F  V  L +L
Sbjct: 272 LRLQEIQLVGGQLAVV-EPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL 325

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 6/110 (5%)

Query: 48  ALLKLHDLRHLDLSNNDFGGSPIPEFI-GSLSKLRYLNLSCGAPLEVP-RTLRNFSGLEY 105
               L +L  LD+S N      + +++   L  L+ L +     + +  R     + LE 
Sbjct: 99  VFTGLSNLTKLDISENKI--VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQ 156

Query: 106 LNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSL 154
           L LE  +L S+ + E LSHL  L  L L ++N+       F+ + +L+ L
Sbjct: 157 LTLEKCNLTSIPT-EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL 205

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 50.5 bits (121), Expect = 6e-08
 Identities = 27/129 (20%), Positives = 43/129 (33%), Gaps = 7/129 (5%)

Query: 48  ALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRNFSGLEYL 106
                  L  L+L+ N         F   L  LR L L       +P       S L  L
Sbjct: 51  EFASFPHLEELELNENIVSAVEPGAFNN-LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109

Query: 107 NLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSLKTFVLRSCALP 165
           ++  + +  +        L +L+ L++   +L   S   F   + L SL+   L  C L 
Sbjct: 110 DISENKIVILLD-YMFQDLYNLKSLEVGDNDLVYISHRAF---SGLNSLEQLTLEKCNLT 165

Query: 166 PINPSFICG 174
            I    +  
Sbjct: 166 SIPTEALSH 174

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 22/102 (21%), Positives = 44/102 (43%), Gaps = 8/102 (7%)

Query: 44  TISPALLK-LHDLRHLDLSNNDFGGSPIPE--FIGSLSKLRYLNLSCGAPLEVPR-TLRN 99
            +   + + L++L+ L++ +ND     I    F G L+ L  L L       +P   L +
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDL--VYISHRAFSG-LNSLEQLTLEKCNLTSIPTEALSH 174

Query: 100 FSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKS 141
             GL  L L + ++ ++        L  L+ L++S+     +
Sbjct: 175 LHGLIVLRLRHLNINAIRD-YSFKRLYRLKVLEISHWPYLDT 215

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.4 bits (113), Expect = 6e-07
 Identities = 28/103 (27%), Positives = 39/103 (37%), Gaps = 4/103 (3%)

Query: 54  DLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV-PRTLRNFSGLEYLNLENSH 112
           + R LDL  N        EF      L  L L+      V P    N   L  L L ++ 
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFAS-FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 113 LFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSL 154
           L  +      + LS+L  LD+S   +       FQ +  L+SL
Sbjct: 92  LKLIPL-GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL 133

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.9 bits (125), Expect = 1e-08
 Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 9/111 (8%)

Query: 48  ALLKLHDLRHLDLSNNDFGGSPIPE--FIGSLSKLRYLNLSCGAPL-EVPRTLRNFSGLE 104
               L+ +  ++L  N    S I    F G + KL Y+ ++    +  +P+ L     L 
Sbjct: 140 VFNGLNQMIVVELGTNPLKSSGIENGAFQG-MKKLSYIRIA-DTNITTIPQGL--PPSLT 195

Query: 105 YLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSL 154
            L+L+ + +  V +   L  L++L  L LS+ +++            LR L
Sbjct: 196 ELHLDGNKITKVDA-ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL 245

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.9 bits (125), Expect = 1e-08
 Identities = 22/115 (19%), Positives = 46/115 (40%), Gaps = 9/115 (7%)

Query: 48  ALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLN 107
           +L  L++L  L LS N                LR L+L+    ++VP  L +   ++ + 
Sbjct: 211 SLKGLNNLAKLGLSFNSISAVDNGSLAN-TPHLRELHLNNNKLVKVPGGLADHKYIQVVY 269

Query: 108 LENSHLFSVGS-----LEWLSHLSSLRHLDLSYINLTKS---RDWFQVVAKLRSL 154
           L N+++ ++GS       + +  +S   + L    +         F+ V    ++
Sbjct: 270 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV 324

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 47.3 bits (113), Expect = 6e-07
 Identities = 28/112 (25%), Positives = 42/112 (37%), Gaps = 11/112 (9%)

Query: 48  ALLKLHDLRHLDLSNNDFGGSPIPE--FIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEY 105
               L +L  L L NN    S I    F   L KL  L LS     E+P  +     L+ 
Sbjct: 71  DFKNLKNLHTLILINNKI--SKISPGAFAP-LVKLERLYLSKNQLKELPEKM--PKTLQE 125

Query: 106 LNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSR---DWFQVVAKLRSL 154
           L +  + +  V      + L+ +  ++L    L  S      FQ + KL  +
Sbjct: 126 LRVHENEITKVRK-SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 7/100 (7%)

Query: 44  TISP-ALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRNFS 101
            ISP A   L  L  L LS N      +PE       L+ L +      +V +      +
Sbjct: 90  KISPGAFAPLVKLERLYLSKNQL--KELPE--KMPKTLQELRVHENEITKVRKSVFNGLN 145

Query: 102 GLEYLNLENSHLFSVG-SLEWLSHLSSLRHLDLSYINLTK 140
            +  + L  + L S G        +  L ++ ++  N+T 
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.8 bits (96), Expect = 9e-05
 Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 7/103 (6%)

Query: 54  DLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV-PRTLRNFSGLEYLNLENSH 112
           D   LDL NN        +F   L  L  L L      ++ P        LE L L  + 
Sbjct: 53  DTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 113 LFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSL 154
           L  +          +L+ L +    +TK  +  F  + ++  +
Sbjct: 112 LKELPE----KMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 150

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 10/128 (7%)

Query: 48  ALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLN 107
             +K+  L  L +SNN      +  +   +  L+ L+LS    L V R    F  LE L 
Sbjct: 267 PFVKMQRLERLYISNNRL--VALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLY 324

Query: 108 LENSHLFSVGSLEWLSHLSSLRHLDLSY--INLTKSRDWFQVVAKLRSLKTFVLRSCALP 165
           L+++ + ++     LS   +L++L LS+   +    R  F+ VA+         + C + 
Sbjct: 325 LDHNSIVTLK----LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDA--DQHCKID 378

Query: 166 PINPSFIC 173
                 +C
Sbjct: 379 YQLEHGLC 386

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 3/94 (3%)

Query: 48  ALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRNFSGLEYL 106
           A    H ++ L +  N     P P    ++  L  L L       +PR    N   L  L
Sbjct: 88  AFAYAHTIQKLYMGFNAIRYLP-PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 146

Query: 107 NLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK 140
           ++ N++L  +   +     +SL++L LS   LT 
Sbjct: 147 SMSNNNLERIED-DTFQATTSLQNLQLSSNRLTH 179

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 6/106 (5%)

Query: 49  LLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNL 108
           L     +  LD S+N    + +        +L  L L     L     L N+ GL  ++L
Sbjct: 201 LAIPIAVEELDASHNSI--NVVRG--PVNVELTILKLQ-HNNLTDTAWLLNYPGLVEVDL 255

Query: 109 ENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSL 154
             + L  +        +  L  L +S   L     + Q +  L+ L
Sbjct: 256 SYNELEKI-MYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 300

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 18/113 (15%), Positives = 40/113 (35%), Gaps = 4/113 (3%)

Query: 44  TISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRNFSG 102
                 + L++ + +   N+     P    + S  ++  LNL+     E+          
Sbjct: 36  YFGFEDITLNNQKIVTFKNSTMRKLP-AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHT 94

Query: 103 LEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSL 154
           ++ L +  + +  +       ++  L  L L   +L+   R  F    KL +L
Sbjct: 95  IQKLYMGFNAIRYLPP-HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 146

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 12/104 (11%)

Query: 52  LHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENS 111
           +  L H ++S N          +     +  L+ S  +   V   +     L  L L+++
Sbjct: 185 IPSLFHANVSYNLL------STLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHN 236

Query: 112 HLFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSL 154
           +L       WL +   L  +DLSY  L K     F  + +L  L
Sbjct: 237 NLTDTA---WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 277

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 4/90 (4%)

Query: 44  TISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGL 103
            ++     +  L+ LDLS+N      +        +L  L L   + + +   L     L
Sbjct: 286 ALNLYGQPIPTLKVLDLSHNHL--LHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTL 341

Query: 104 EYLNLENSHLFSVGSLEWLSHLSSLRHLDL 133
           + L L ++            +++     D 
Sbjct: 342 KNLTLSHNDWDCNSLRALFRNVARPAVDDA 371

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 51.1 bits (123), Expect = 2e-08
 Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 5/110 (4%)

Query: 48  ALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV--PRTLRNFSGLEY 105
           +     +L  L L +N         F G L+ L  L+LS  A L    P T      L  
Sbjct: 51  SFRACRNLTILWLHSNVLARIDAAAFTG-LALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109

Query: 106 LNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSL 154
           L+L+   L  +G       L++L++L L    L     D F+ +  L  L
Sbjct: 110 LHLDRCGLQELGP-GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 158

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 9/130 (6%)

Query: 44  TISP-ALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV--PRTLRNF 100
            I   A   L  L  LDLS+N    S  P     L +L  L+L     L+   P   R  
Sbjct: 70  RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD-RCGLQELGPGLFRGL 128

Query: 101 SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSLKTFVL 159
           + L+YL L+++ L ++   +    L +L HL L    ++      F+    L SL   +L
Sbjct: 129 AALQYLYLQDNALQAL-PDDTFRDLGNLTHLFLHGNRISSVPERAFR---GLHSLDRLLL 184

Query: 160 RSCALPPINP 169
               +  ++P
Sbjct: 185 HQNRVAHVHP 194

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.8 bits (104), Expect = 7e-06
 Identities = 26/110 (23%), Positives = 38/110 (34%), Gaps = 6/110 (5%)

Query: 48  ALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV--PRTLRNFSGLEY 105
               L  L++L L +N     P   F   L  L +L L  G  +     R  R    L+ 
Sbjct: 124 LFRGLAALQYLYLQDNALQALPDDTFRD-LGNLTHLFLH-GNRISSVPERAFRGLHSLDR 181

Query: 106 LNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSL 154
           L L  + +  V        L  L  L L   NL+    +    +  L+ L
Sbjct: 182 LLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL 230

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 7/90 (7%)

Query: 48  ALLKLHDLRHLDLSNNDFGGSPIPEFI-GSLSKLRYLNLSCGAPLEV--PRTLRNFSGLE 104
               L +L HL L  N    S +PE     L  L  L L     +    P   R+   L 
Sbjct: 148 TFRDLGNLTHLFLHGNRI--SSVPERAFRGLHSLDRLLLH-QNRVAHVHPHAFRDLGRLM 204

Query: 105 YLNLENSHLFSVGSLEWLSHLSSLRHLDLS 134
            L L  ++L ++   E L+ L +L++L L+
Sbjct: 205 TLYLFANNLSAL-PTEALAPLRALQYLRLN 233

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.5 bits (123), Expect = 3e-08
 Identities = 32/151 (21%), Positives = 56/151 (37%), Gaps = 30/151 (19%)

Query: 47  PALLKLHDLRHLDLSNND--------FGGSP--------------IPEFIGSLSKLRYLN 84
             LL    L  +DLS N+        F                  +  +   +  L+ L+
Sbjct: 248 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLD 307

Query: 85  LSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKS--R 142
           LS    L V R    F  LE L L+++ + ++     LS   +L++L LS+ +   +  R
Sbjct: 308 LSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK----LSTHHTLKNLTLSHNDWDCNSLR 363

Query: 143 DWFQVVAKLRSLKTFVLRSCALPPINPSFIC 173
             F+ VA+         + C +       +C
Sbjct: 364 ALFRNVARPAVDDA--DQHCKIDYQLEHGLC 392

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.1 bits (109), Expect = 2e-06
 Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 5/95 (5%)

Query: 48  ALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV--PRTLRNFSGLEY 105
           A    H ++ L +  N     P P    ++  L  L L     L         N   L  
Sbjct: 94  AFAYAHTIQKLYMGFNAIRYLP-PHVFQNVPLLTVLVLE-RNDLSSLPRGIFHNTPKLTT 151

Query: 106 LNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK 140
           L++ N++L  +   +     +SL++L LS   LT 
Sbjct: 152 LSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTH 185

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 45.3 bits (107), Expect = 4e-06
 Identities = 28/126 (22%), Positives = 46/126 (36%), Gaps = 9/126 (7%)

Query: 48  ALLKLHDLRHLDLSNNDFGGSPIPEFI-GSLSKLRYLNLSCGAPLEVP-RTLRNFSGLEY 105
            L     +  L+L++       I  +       ++ L +   A   +P    +N   L  
Sbjct: 70  LLDSFRQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127

Query: 106 LNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSLKTFVLRSCAL 164
           L LE + L S+       +   L  L +S  NL +   D FQ      SL+   L S  L
Sbjct: 128 LVLERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIEDDTFQ---ATTSLQNLQLSSNRL 183

Query: 165 PPINPS 170
             ++ S
Sbjct: 184 THVDLS 189

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.9 bits (106), Expect = 4e-06
 Identities = 17/126 (13%), Positives = 38/126 (30%), Gaps = 6/126 (4%)

Query: 44  TISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGL 103
            ++     +  L+ LDLS+N      +        +L  L L   + + +   L     L
Sbjct: 292 ALNLYGQPIPTLKVLDLSHNHL--LHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTL 347

Query: 104 EYLNLENSHLFSVGSLEWLSHLSSLR--HLDLSYINLTKSRDWFQVVAKLRSLKTFVLRS 161
           + L L ++            +++       D       +           +     +L+ 
Sbjct: 348 KNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQY 407

Query: 162 CALPPI 167
            AL  +
Sbjct: 408 IALTSV 413

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.9 bits (106), Expect = 5e-06
 Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 15/121 (12%)

Query: 52  LHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENS 111
           +  L H ++S N          +     +  L+ S  +   V   +     L  L L+++
Sbjct: 191 IPSLFHANVSYNLL------STLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHN 242

Query: 112 HLFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSLKTFVLRSCALPPINPS 170
           +L       WL +   L  +DLSY  L K     F    K++ L+   + +  L  +N  
Sbjct: 243 NLTDTA---WLLNYPGLVEVDLSYNELEKIMYHPF---VKMQRLERLYISNNRLVALNLY 296

Query: 171 F 171
            
Sbjct: 297 G 297

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.8 bits (103), Expect = 1e-05
 Identities = 18/113 (15%), Positives = 40/113 (35%), Gaps = 4/113 (3%)

Query: 44  TISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRNFSG 102
                 + L++ + +   N+     P    + S  ++  LNL+     E+          
Sbjct: 42  YFGFEDITLNNQKIVTFKNSTMRKLP-AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHT 100

Query: 103 LEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSL 154
           ++ L +  + +  +       ++  L  L L   +L+   R  F    KL +L
Sbjct: 101 IQKLYMGFNAIRYLPP-HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 152

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.2 bits (120), Expect = 7e-08
 Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 9/122 (7%)

Query: 44  TISP-ALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV--PRTLRNF 100
            IS  A + + +LR+LDLS+N         F   L  L  L L     + V       + 
Sbjct: 78  FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSD-LQALEVLLLY-NNHIVVVDRNAFEDM 135

Query: 101 SGLEYLNLENSHLFSV--GSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFV 158
           + L+ L L  + +       ++  + L  L  LDLS   L K       + KL +     
Sbjct: 136 AQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL--TDLQKLPAWVKNG 193

Query: 159 LR 160
           L 
Sbjct: 194 LY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.5 bits (113), Expect = 5e-07
 Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 10/128 (7%)

Query: 48  ALLKLHDLRHLDLSNNDFGGSPIPE--FIGSLSKLRYLNLSCGAPLEV--PRTLRNFSGL 103
              +L +L  L LS+N    + I    F+  +  LRYL+LS    L         +   L
Sbjct: 59  TPTRLTNLHSLLLSHNHL--NFISSEAFVP-VPNLRYLDLS-SNHLHTLDEFLFSDLQAL 114

Query: 104 EYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSLKTFVLRSC 162
           E L L N+H+  V        ++ L+ L LS   +++   +  +   KL  L    L S 
Sbjct: 115 EVLLLYNNHIVVVDR-NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN 173

Query: 163 ALPPINPS 170
            L  +  +
Sbjct: 174 KLKKLPLT 181

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.3 bits (118), Expect = 7e-08
 Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 7/115 (6%)

Query: 45  ISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLE 104
           +   L  L   +HL LS N+     I   +  +  LR L+L      ++         LE
Sbjct: 40  MDATLSTLKACKHLALSTNNI--EKI-SSLSGMENLRILSLGRNLIKKIENLDAVADTLE 96

Query: 105 YLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVL 159
            L +  + +    SL  +  L +LR L +S  N   +      +A L  L+  +L
Sbjct: 97  ELWISYNQI---ASLSGIEKLVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLL 147

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 3/86 (3%)

Query: 49  LLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNL 108
           L  + +LR L L  N      I         L  L +S    +     +     L  L +
Sbjct: 66  LSGMENLRILSLGRNLI--KKIENLDAVADTLEELWISYNQ-IASLSGIEKLVNLRVLYM 122

Query: 109 ENSHLFSVGSLEWLSHLSSLRHLDLS 134
            N+ + + G ++ L+ L  L  L L+
Sbjct: 123 SNNKITNWGEIDKLAALDKLEDLLLA 148

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 4/110 (3%)

Query: 48  ALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV--PRTLRNFSGLEY 105
               L  L  L+L  N +           L+KL+ L +           +     + LE 
Sbjct: 119 WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE 178

Query: 106 LNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSL 154
           L ++ S L S    + L  + ++ HL L           +  V + +  L
Sbjct: 179 LEIDASDLQSYEP-KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 47.0 bits (112), Expect = 7e-07
 Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 8/91 (8%)

Query: 51  KLHDLRHLDLSNNDFGGSPIPEF-------IGSLSKLRYLNLSCGAPLEVPRTLRNFSGL 103
               +  L+L + D       E        +      R + ++  +  +V + L   SGL
Sbjct: 220 VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGL 279

Query: 104 EYLNLENSHLFSVGSLEWLSHLSSLRHLDLS 134
             L    + L SV        L+SL+ + L 
Sbjct: 280 LELEFSRNQLKSVPD-GIFDRLTSLQKIWLH 309

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 32/128 (25%), Positives = 53/128 (41%), Gaps = 13/128 (10%)

Query: 48  ALLKLHDLRHLDLSNNDFGGSPIPE--FIGSLSKLRYLNLSCGAPLEV--PRTLRNFSGL 103
            L +  +L+ L L++N    + I E  F   L  L +L+LS    L        +  S L
Sbjct: 71  DLQRCVNLQALVLTSNGI--NTIEEDSFSS-LGSLEHLDLS-YNYLSNLSSSWFKPLSSL 126

Query: 104 EYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKS--RDWFQVVAKLRSLKTFVLRS 161
            +LNL  +   ++G     SHL+ L+ L +  ++      R  F   A L  L+   + +
Sbjct: 127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF---AGLTFLEELEIDA 183

Query: 162 CALPPINP 169
             L    P
Sbjct: 184 SDLQSYEP 191

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 15/118 (12%)

Query: 48  ALLKLHDLRHLDLSNNDFGGSPIPE-FIGSLSKLRYLNLSC---------GAPLEVPRTL 97
           +L  + ++ HL L         + E F+   S +  L L                   +L
Sbjct: 193 SLKSIQNVSHLILHMKQH--ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL 250

Query: 98  RNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSL 154
                   + + +  LF V  L  L+ +S L  L+ S   L       F  +  L+ +
Sbjct: 251 IKKFTFRNVKITDESLFQVMKL--LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKI 306

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 5/104 (4%)

Query: 54  DLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVP-RTLRNFSGLEYLNLENSH 112
            ++ LDLSNN        +       L+ L L+      +   +  +   LE+L+L  ++
Sbjct: 53  AVKSLDLSNNRITYISNSDLQR-CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 113 LFSVGSLEWLSHLSSLRHLDLSYINLT--KSRDWFQVVAKLRSL 154
           L ++ S  W   LSSL  L+L             F  + KL+ L
Sbjct: 112 LSNL-SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL 154

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 29/127 (22%), Positives = 46/127 (36%), Gaps = 16/127 (12%)

Query: 45  ISPALLKLHDLRHLDLSNNDFGGSPIP--EFIGSLSKLRYLNLSCGAPLEVPRTLRNFSG 102
           I P L  L +L  L L  N      +     +  L KL+ L+L     +     L +   
Sbjct: 83  IKP-LANLKNLGWLFLDEN-----KVKDLSSLKDLKKLKSLSLE-HNGISDINGLVHLPQ 135

Query: 103 LEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSC 162
           LE L L N+ +     +  LS L+ L  L L    ++        +A L  L+   L   
Sbjct: 136 LESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQISD----IVPLAGLTKLQNLYLSKN 188

Query: 163 ALPPINP 169
            +  +  
Sbjct: 189 HISDLRA 195

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 8/110 (7%)

Query: 47  PALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYL 106
             L+ L  L  L L NN    + I   +  L+KL  L+L     +     L   + L+ L
Sbjct: 128 NGLVHLPQLESLYLGNN--KITDI-TVLSRLTKLDTLSLE-DNQISDIVPLAGLTKLQNL 183

Query: 107 NLENSHLFSVGSLEWLSHLSSLRHLDLSYINLT-KSRDWFQVVAKLRSLK 155
            L  +H+     L  L+ L +L  L+L       K  +    +    ++K
Sbjct: 184 YLSKNHI---SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 230

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 15/120 (12%), Positives = 39/120 (32%), Gaps = 12/120 (10%)

Query: 45  ISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLE 104
           I        +    +L                L+ +  +  +  + ++  + ++    + 
Sbjct: 17  IFS-DDAFAETIKDNLKKKSVTD---AVTQNELNSIDQIIAN-NSDIKSVQGIQYLPNVT 71

Query: 105 YLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCAL 164
            L L  + L     ++ L++L +L  L L    +         +  L+ LK+  L    +
Sbjct: 72  KLFLNGNKL---TDIKPLANLKNLGWLFLDENKVKD----LSSLKDLKKLKSLSLEHNGI 124

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 33/152 (21%), Positives = 54/152 (35%), Gaps = 17/152 (11%)

Query: 19  TTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIG--S 76
              H  +L L +   +     +L         K   +  LDLS N F  S    F    +
Sbjct: 178 QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIA 237

Query: 77  LSKLRYLNLSCGAPLEVPRTLRNF-------------SGLEYLNLENSHLFSVGSLEWLS 123
            +K++ L LS    +       NF             SG++  +L  S +F++      S
Sbjct: 238 GTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK-SVFS 296

Query: 124 HLSSLRHLDLSYINLTK-SRDWFQVVAKLRSL 154
           H + L  L L+   + K   + F  +  L  L
Sbjct: 297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL 328

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 25/113 (22%), Positives = 39/113 (34%), Gaps = 7/113 (6%)

Query: 48  ALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVP-RTLRNFSGLEYL 106
           +  +L DL+ L +     G          LS L  L L     L++        + LE L
Sbjct: 49  SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108

Query: 107 NLENSHLFSVG-SLEWLSHLSSLRHLDLSYINLT--KSRDWFQVVAKLRSLKT 156
            L   +L     S  +   L+SL  L L   N+   +   +F     +R    
Sbjct: 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL---NMRRFHV 158

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 7/104 (6%)

Query: 41  LKGTISP-ALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSC----GAPLEVPR 95
               I       L  L  L L  N F       F G L+ L  L L+     GA L    
Sbjct: 66  PGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNG-LANLEVLTLTQCNLDGAVLS-GN 123

Query: 96  TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLT 139
             +  + LE L L ++++  +    +  ++     LDL++  + 
Sbjct: 124 FFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 18/130 (13%)

Query: 48  ALLKLHDLRHLDLSNNDFGGSPIPE--FIGSLSKLRYLNLSCGAPLEVP-RTLRNFSGLE 104
                 DL  L L+ N+   + I +  F G L+ L  LNLS      +  R   N   LE
Sbjct: 294 VFSHFTDLEQLTLAQNEI--NKIDDNAFWG-LTHLLKLNLSQNFLGSIDSRMFENLDKLE 350

Query: 105 YLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSLKTFVLRSCA 163
            L+L  +H+ ++G  +    L +L+ L L    L       F    +L SL+   L +  
Sbjct: 351 VLDLSYNHIRALGD-QSFLGLPNLKELALDTNQLKSVPDGIF---DRLTSLQKIWLHT-- 404

Query: 164 LPPINPSFIC 173
               NP + C
Sbjct: 405 ----NP-WDC 409

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 22/111 (19%), Positives = 37/111 (33%), Gaps = 20/111 (18%)

Query: 45  ISPALLKLHDLRHLDLSNNDF---GGSPIPEFIGSLSKLRYLNLSC------GA------ 89
           +  ALLK   L  + LS+N F      P+ +F+   + L +L L                
Sbjct: 86  LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA 145

Query: 90  --PLEVPRTLRNFSGLEYLNLENSHLFSVGSLEW---LSHLSSLRHLDLSY 135
              L V +  +N   L  +    + L +    EW         L  + +  
Sbjct: 146 LQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQ 196

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 18/111 (16%)

Query: 45  ISPALLKLHDLRHLDLSNNDFG----GSPIPEFIGSLSKLRYLNLSC------GAPLEVP 94
            +        L  + +  N          + E +    +L+ L+L        G+   + 
Sbjct: 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS-ALA 237

Query: 95  RTLRNFSGLEYLNLENSHLFSVG------SLEWLSHLSSLRHLDLSYINLT 139
             L+++  L  L L +  L + G      +   L +   L+ L L Y  + 
Sbjct: 238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLEN-IGLQTLRLQYNEIE 287

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 44.3 bits (105), Expect = 6e-06
 Identities = 25/148 (16%), Positives = 44/148 (29%), Gaps = 28/148 (18%)

Query: 45  ISPALLKLHDLRHLDLSNNDFG---GSPIPEFIGSLSKLRYLNLSC----GAPLEVP--- 94
           +   LL+   ++ + LS N  G      + E I S   L     S         E+P   
Sbjct: 24  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 83

Query: 95  ----RTLRNFSGLEYLNLENSHLFSVGSL---EWLSHLSSLRHLDLSYINLT-------- 139
               + L     L  + L ++           ++LS  + L HL L    L         
Sbjct: 84  RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA 143

Query: 140 ---KSRDWFQVVAKLRSLKTFVLRSCAL 164
              +     +       L++ +     L
Sbjct: 144 RALQELAVNKKAKNAPPLRSIICGRNRL 171

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 20/127 (15%)

Query: 42  KGTISPALLKLHDLRHLDLSNNDF---GGSPIPEFIGSLSKLRYLNLSC------GAPL- 91
           +  +   L    +L+ LDL +N F   G S +   + S   LR L L+       GA   
Sbjct: 205 EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 264

Query: 92  -EVPRTLRNFSGLEYLNLENSHLFSVG------SLEWLSHLSSLRHLDLSYINLTKSRDW 144
            +    L N   L+ L L+ + +           ++    +  L  L+L+    ++  D 
Sbjct: 265 VDAFSKLENIG-LQTLRLQYNEIELDAVRTLKTVID--EKMPDLLFLELNGNRFSEEDDV 321

Query: 145 FQVVAKL 151
              + ++
Sbjct: 322 VDEIREV 328

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 48.0 bits (114), Expect = 3e-07
 Identities = 39/162 (24%), Positives = 58/162 (35%), Gaps = 5/162 (3%)

Query: 6   RDCCKWRGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHD--LRHLDLSNN 63
            D   W+ +       H  V     S    A R        P         ++H+DLSN+
Sbjct: 44  SDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNS 103

Query: 64  DFGGSPIPEFIGSLSKLRYLNLS-CGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWL 122
               S +   +   SKL+ L+L        +  TL   S L  LNL     FS  +L+ L
Sbjct: 104 VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL 163

Query: 123 -SHLSSLRHLDLSYINLTKSRDWFQVVAKL-RSLKTFVLRSC 162
            S  S L  L+LS+      +     VA +  ++    L   
Sbjct: 164 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 7/118 (5%)

Query: 51  KLHDLRHLDLSN-NDFGGSPIPEFIGSLSK-LRYLNLS-CGAPLE---VPRTLRNFSGLE 104
               L  L+LS   DF    +   +  +S+ +  LNLS     L+   +   +R    L 
Sbjct: 166 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 225

Query: 105 YLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSC 162
           +L+L +S +      +    L+ L+HL LS             + ++ +LKT  +   
Sbjct: 226 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET-LLELGEIPTLKTLQVFGI 282

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.3 bits (113), Expect = 5e-07
 Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 15/118 (12%)

Query: 47  PALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYL 106
           P L     L+ +D+ NN      + +       L ++       LE    L+N   L  +
Sbjct: 147 PELQNSSFLKIIDVDNN-----SLKKLPDLPPSLEFIAAG-NNQLEELPELQNLPFLTAI 200

Query: 107 NLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCAL 164
             +N+ L  +  L       SL  +      L +       +  L  L T    +  L
Sbjct: 201 YADNNSLKKLPDL-----PLSLESIVAGNNILEE----LPELQNLPFLTTIYADNNLL 249

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 25/132 (18%), Positives = 43/132 (32%), Gaps = 27/132 (20%)

Query: 55  LRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLR---------------- 98
           L  L  S N    + +PE   SL  L   N +  A  ++P  L                 
Sbjct: 93  LESLVASCNSL--TELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQ 150

Query: 99  NFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFV 158
           N S L+ ++++N+ L  +  L       SL  +      L +       +  L  L    
Sbjct: 151 NSSFLKIIDVDNNSLKKLPDL-----PPSLEFIAAGNNQLEE----LPELQNLPFLTAIY 201

Query: 159 LRSCALPPINPS 170
             + +L  +   
Sbjct: 202 ADNNSLKKLPDL 213

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 23/110 (20%), Positives = 37/110 (33%), Gaps = 17/110 (15%)

Query: 55  LRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLF 114
              L+L+N     S +PE    L     L  SC +  E+P   ++   L   N     L 
Sbjct: 73  AHELELNNLGL--SSLPELPPHL---ESLVASCNSLTELPELPQSLKSLLVDNNNLKALS 127

Query: 115 SVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCAL 164
            +           L +L +S   L K       +     LK   + + +L
Sbjct: 128 DL--------PPLLEYLGVSNNQLEK----LPELQNSSFLKIIDVDNNSL 165

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 17/106 (16%)

Query: 47  PALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYL 106
           P L  L  L  +   NN      +P+   SL  L   +       ++P   ++ + L+  
Sbjct: 231 PELQNLPFLTTIYADNNLL--KTLPDLPPSLEALNVRDNYLT---DLPELPQSLTFLDVS 285

Query: 107 NLENSHLFSV-GSLEWL-----------SHLSSLRHLDLSYINLTK 140
               S L  +  +L +L               SL  L++S   L +
Sbjct: 286 ENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE 331

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 13/86 (15%)

Query: 55  LRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLF 114
           L +L+ S+N+     I         L  LN+S    +E+P        LE L    +HL 
Sbjct: 299 LYYLNASSNE-----IRSLCDLPPSLEELNVSNNKLIELPALPPR---LERLIASFNHLA 350

Query: 115 SVGSLEWLSHLSSLRHLDLSYINLTK 140
            V  L       +L+ L + Y  L +
Sbjct: 351 EVPEL-----PQNLKQLHVEYNPLRE 371

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.2 bits (110), Expect = 6e-07
 Identities = 23/106 (21%), Positives = 46/106 (43%), Gaps = 5/106 (4%)

Query: 52  LHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTL-RNFSGLEYLNLEN 110
           L     +D S+N+     + +    L +L+ L ++      +   L +    L  L L N
Sbjct: 41  LDQFDAIDFSDNEI--RKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN 97

Query: 111 SHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRD-WFQVVAKLRSLK 155
           + L  +G L+ L+ L SL +L +    +T  +     V+ K+  ++
Sbjct: 98  NSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVR 143

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.1 bits (102), Expect = 8e-06
 Identities = 20/114 (17%), Positives = 35/114 (30%), Gaps = 5/114 (4%)

Query: 46  SPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEY 105
           +         R LDL         I     +L +   ++ S    +           L+ 
Sbjct: 12  AAQYTNAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFS-DNEIRKLDGFPLLRRLKT 68

Query: 106 LNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVL 159
           L + N+ +  +G       L  L  L L+  N          +A L+SL    +
Sbjct: 69  LLVNNNRICRIGEGL-DQALPDLTELILTN-NSLVELGDLDPLASLKSLTYLCI 120

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.4 bits (110), Expect = 1e-06
 Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 4/104 (3%)

Query: 41  LKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNF 100
            +        K+    HLD SNN    +      G L++L  L L      E+ +     
Sbjct: 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENC-GHLTELETLILQMNQLKELSKIAEMT 370

Query: 101 SG---LEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKS 141
           +    L+ L++  + +         S   SL  L++S   LT +
Sbjct: 371 TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT 414

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 21/112 (18%), Positives = 45/112 (40%), Gaps = 6/112 (5%)

Query: 45  ISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLS-CGAPLEVPRTLRNFSGL 103
           I+    ++  L+ LD+S N                L  LN+S       + R L     +
Sbjct: 366 IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRI 423

Query: 104 EYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSL 154
           + L+L ++ + S+   + +  L +L+ L+++   L       F  +  L+ +
Sbjct: 424 KVLDLHSNKIKSIP--KQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKI 473

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 6/132 (4%)

Query: 48  ALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLN 107
            +L L  LR L +S+N      I  F     +L YL+LS    +++         L++L+
Sbjct: 40  DILSLSKLRILIISHNRIQYLDISVF-KFNQELEYLDLSHNKLVKIS--CHPTVNLKHLD 96

Query: 108 LENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTF-VLRSCALPP 166
           L  +   ++   +   ++S L+ L LS  +L KS      +A L   K   VL       
Sbjct: 97  LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS--VLPIAHLNISKVLLVLGETYGEK 154

Query: 167 INPSFICGWEIH 178
            +P  +  +   
Sbjct: 155 EDPEGLQDFNTE 166

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.8 bits (98), Expect = 5e-05
 Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 7/120 (5%)

Query: 54  DLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENSH 112
               L++S N        +   SLSKLR L +S      +     +    LEYL+L ++ 
Sbjct: 22  KTTILNISQNYISELWTSDI-LSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 113 LFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFI 172
           L  +          +L+HLDLS+ N   +    +    +  LK   L +  L   +   I
Sbjct: 81  LVKISC----HPTVNLKHLDLSF-NAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPI 135

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.4 bits (97), Expect = 7e-05
 Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 2/110 (1%)

Query: 51  KLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLEN 110
              +L+HLDLS N F   PI +  G++S+L++L LS     +    +   + L    +  
Sbjct: 88  PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS--VLPIAHLNISKVLL 145

Query: 111 SHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLR 160
               + G  E    L       L  +  T     F +   ++++    L 
Sbjct: 146 VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 11/123 (8%)

Query: 47  PALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYL 106
            A+  L  ++ LDL++           +  LS L+ L L     +     L   + L+YL
Sbjct: 101 SAIAGLQSIKTLDLTSTQITD---VTPLAGLSNLQVLYLD-LNQITNISPLAGLTNLQYL 156

Query: 107 NLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPP 166
           ++ N+ +     L  L++LS L  L      ++        +A L +L    L++  +  
Sbjct: 157 SIGNAQV---SDLTPLANLSKLTTLKADDNKISD----ISPLASLPNLIEVHLKNNQISD 209

Query: 167 INP 169
           ++P
Sbjct: 210 VSP 212

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 44.3 bits (105), Expect = 5e-06
 Identities = 20/103 (19%), Positives = 42/103 (40%), Gaps = 13/103 (12%)

Query: 47  PALLKLHDLRHLDLSNN---DFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGL 103
             L  L +L++L + N    D         + +LSKL  L       +     L +   L
Sbjct: 145 SPLAGLTNLQYLSIGNAQVSDL------TPLANLSKLTTLKAD-DNKISDISPLASLPNL 197

Query: 104 EYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQ 146
             ++L+N+ +     +  L++ S+L  + L+   +T    ++ 
Sbjct: 198 IEVHLKNNQI---SDVSPLANTSNLFIVTLTNQTITNQPVFYN 237

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.9 bits (104), Expect = 9e-06
 Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 11/123 (8%)

Query: 47  PALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYL 106
                L  +  L             E +  L+ L  L L     +     L+N + +  L
Sbjct: 35  VTQADLDGITTLSAFGTGVTTI---EGVQYLNNLIGLELK-DNQITDLAPLKNLTKITEL 90

Query: 107 NLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPP 166
            L  + L    ++  ++ L S++ LDL+   +T        +A L +L+   L    +  
Sbjct: 91  ELSGNPL---KNVSAIAGLQSIKTLDLTSTQITD----VTPLAGLSNLQVLYLDLNQITN 143

Query: 167 INP 169
           I+P
Sbjct: 144 ISP 146

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 13/94 (13%), Positives = 35/94 (37%), Gaps = 8/94 (8%)

Query: 76  SLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSY 135
           +L+    +     + +    T  +  G+  L+   + +    ++E + +L++L  L+L  
Sbjct: 17  ALANAIKIAAG-KSNVTDTVTQADLDGITTLSAFGTGV---TTIEGVQYLNNLIGLELKD 72

Query: 136 INLTKSRDWFQVVAKLRSLKTFVLRSCALPPINP 169
             +T        +  L  +    L    L  ++ 
Sbjct: 73  NQITD----LAPLKNLTKITELELSGNPLKNVSA 102

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 26/134 (19%), Positives = 41/134 (30%), Gaps = 26/134 (19%)

Query: 55  LRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLF 114
           L+ L +S+N    + +P     L KL   N        +P        L+ L +  + L 
Sbjct: 183 LQELSVSDNQL--ASLPTLPSELYKLWAYNNRLT---SLPALPSG---LKELIVSGNRLT 234

Query: 115 SV----GSLEWLS-----------HLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVL 159
           S+      L+ L              S L  L +    LT+  +       L S  T  L
Sbjct: 235 SLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESL---IHLSSETTVNL 291

Query: 160 RSCALPPINPSFIC 173
               L       + 
Sbjct: 292 EGNPLSERTLQALR 305

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.5 bits (105), Expect = 6e-06
 Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 16/101 (15%)

Query: 55  LRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLF 114
           LR L++S N    + +P     L +L   +        +P      SGL  L +  + L 
Sbjct: 83  LRTLEVSGNQL--TSLPVLPPGLLELSIFSNPLTHLPALP------SGLCKLWIFGNQLT 134

Query: 115 SVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLK 155
           S+  L        L+ L +S   L          ++L  L 
Sbjct: 135 SLPVL-----PPGLQELSVSDNQLASLPALP---SELCKLW 167

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 12/85 (14%), Positives = 27/85 (31%), Gaps = 9/85 (10%)

Query: 55  LRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLF 114
              L++  +    + +P+ +   + +  L +       +P        L  L +  + L 
Sbjct: 42  NAVLNVGESGL--TTLPDCLP--AHITTLVIPDNNLTSLPALPPE---LRTLEVSGNQLT 94

Query: 115 SVGSLEWLSHLSSLRHLDLSYINLT 139
           S+  L     L  L        +L 
Sbjct: 95  SLPVL--PPGLLELSIFSNPLTHLP 117

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 23/138 (16%), Positives = 40/138 (28%), Gaps = 29/138 (21%)

Query: 44  TISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGL 103
           ++      L +L             P        S L  L +       +P        L
Sbjct: 95  SLPVLPPGLLELSIFSNPLTHLPALP--------SGLCKLWIFGNQLTSLPVLPPG---L 143

Query: 104 EYLNLENSHLFSV----GSLEWL-----------SHLSSLRHLDLSYINLTKSRDWFQVV 148
           + L++ ++ L S+      L  L              S L+ L +S   L          
Sbjct: 144 QELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLP--- 200

Query: 149 AKLRSLKTFVLRSCALPP 166
           ++L  L  +  R  +LP 
Sbjct: 201 SELYKLWAYNNRLTSLPA 218

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.9 bits (104), Expect = 3e-06
 Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 5/120 (4%)

Query: 38  RKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTL 97
            +  +G +     +  +L  L   N     + I   +  L+KL+ L LS          L
Sbjct: 27  SRSNEGKLEGLTDEFEELEFLSTINVGL--TSI-ANLPKLNKLKKLELSDNRVSGGLEVL 83

Query: 98  -RNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRD-WFQVVAKLRSLK 155
                 L +LNL  + +  + ++E L  L +L+ LDL    +T   D    V   L  L 
Sbjct: 84  AEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT 143

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 3/109 (2%)

Query: 54  DLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHL 113
           D++ L L N+      +        +L +L+      L     L   + L+ L L ++ +
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTI-NVGLTSIANLPKLNKLKKLELSDNRV 76

Query: 114 FSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSC 162
                +       +L HL+LS  N  K     + + KL +LK+  L +C
Sbjct: 77  SGGLEVL-AEKCPNLTHLNLSG-NKIKDLSTIEPLKKLENLKSLDLFNC 123

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 7/97 (7%)

Query: 50  LKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLE 109
           +    L  L L NN+       + +  L  L  L++     L+    L   S LE L+L 
Sbjct: 103 IPSACLSRLFLDNNEL---RDTDSLIHLKNLEILSIR-NNKLKSIVMLGFLSKLEVLDLH 158

Query: 110 NSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQ 146
            + +    +   L+ L  +  +DL+          +Q
Sbjct: 159 GNEI---TNTGGLTRLKKVNWIDLTGQKCVNEPVKYQ 192

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 19/116 (16%), Positives = 47/116 (40%), Gaps = 12/116 (10%)

Query: 49  LLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNL 108
             +L  +++ +  N++     +   +   + L+ L+LS    +     L++ + LE L++
Sbjct: 37  QKELSGVQNFNGDNSNI--QSL-AGMQFFTNLKELHLS-HNQISDLSPLKDLTKLEELSV 92

Query: 109 ENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCAL 164
             + L ++  +        L  L L    L         +  L++L+   +R+  L
Sbjct: 93  NRNRLKNLNGIPSA----CLSRLFLDNNELRD----TDSLIHLKNLEILSIRNNKL 140

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 16/96 (16%), Positives = 35/96 (36%), Gaps = 8/96 (8%)

Query: 45  ISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLE 104
           + P    L +    +L                LS ++  N    + ++    ++ F+ L+
Sbjct: 12  VFP-DPGLANAVKQNLGKQSVTD---LVSQKELSGVQNFNGDN-SNIQSLAGMQFFTNLK 66

Query: 105 YLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK 140
            L+L ++ +     L  L  L+ L  L ++   L  
Sbjct: 67  ELHLSHNQI---SDLSPLKDLTKLEELSVNRNRLKN 99

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 24/122 (19%), Positives = 40/122 (32%), Gaps = 14/122 (11%)

Query: 49  LLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNL 108
           +     L  LD   N          +   ++L  L+ S     E+   +     L  LN 
Sbjct: 144 VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNC 198

Query: 109 ENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPIN 168
           + +++  +     L+    L  LD S   LT+       V  L  L  F      L  ++
Sbjct: 199 DTNNITKLD----LNQNIQLTFLDCSSNKLTEID-----VTPLTQLTYFDCSVNPLTELD 249

Query: 169 PS 170
            S
Sbjct: 250 VS 251

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 14/120 (11%)

Query: 51  KLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLEN 110
           +L  L  LD  N+          I  L+ L  L  +      +   L   + L YL  ++
Sbjct: 40  QLATLTSLDCHNSSITDMT---GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDS 94

Query: 111 SHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPS 170
           + L    +L+ ++ L+ L +L+     LTK       V++   L         L  I+ S
Sbjct: 95  NKL---TNLD-VTPLTKLTYLNCDTNKLTKL-----DVSQNPLLTYLNCARNTLTEIDVS 145

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 10/97 (10%)

Query: 44  TISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGL 103
                +     L  LD S N    + +   +     L  LN      +     L     L
Sbjct: 161 ITKLDVTPQTQLTTLDCSFNKI--TELD--VSQNKLLNRLNCD-TNNITKL-DLNQNIQL 214

Query: 104 EYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK 140
            +L+  ++ L  +     ++ L+ L + D S   LT+
Sbjct: 215 TFLDCSSNKLTEID----VTPLTQLTYFDCSVNPLTE 247

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 18/116 (15%), Positives = 41/116 (35%), Gaps = 14/116 (12%)

Query: 49  LLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNL 108
           +  L  L +L+   N          +     L YLN +     E+   + + + L  L+ 
Sbjct: 102 VTPLTKLTYLNCDTNKLTKLD----VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDC 155

Query: 109 ENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCAL 164
             +   +      ++  + L  LD S+  +T+       V++ + L      +  +
Sbjct: 156 HLNKKITKLD---VTPQTQLTTLDCSFNKITEL-----DVSQNKLLNRLNCDTNNI 203

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 14/92 (15%), Positives = 34/92 (36%), Gaps = 9/92 (9%)

Query: 49  LLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNL 108
           + +   L +L+ + N    + I   +   ++L  L+      +     +   + L  L+ 
Sbjct: 123 VSQNPLLTYLNCARNTL--TEID--VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDC 177

Query: 109 ENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK 140
             + +  +     +S    L  L+    N+TK
Sbjct: 178 SFNKITELD----VSQNKLLNRLNCDTNNITK 205

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 10/94 (10%)

Query: 47  PALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYL 106
             + KL  L  L  ++N+   + +   +   + L YL         +   +   + L YL
Sbjct: 58  TGIEKLTGLTKLICTSNNI--TTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYL 111

Query: 107 NLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK 140
           N + + L  +     +S    L +L+ +   LT+
Sbjct: 112 NCDTNKLTKLD----VSQNPLLTYLNCARNTLTE 141

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.8 bits (96), Expect = 9e-05
 Identities = 14/94 (14%), Positives = 32/94 (34%), Gaps = 9/94 (9%)

Query: 46  SPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEY 105
              +     L  LD        + +   +    KL YL L+     E+   + + + L+ 
Sbjct: 290 ELDVTHNTQLYLLDCQAAGI--TELD--LSQNPKLVYLYLNNTELTELD--VSHNTKLKS 343

Query: 106 LNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLT 139
           L+  N+H+        +  + +L +   +     
Sbjct: 344 LSCVNAHI---QDFSSVGKIPALNNNFEAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 9/92 (9%)

Query: 49  LLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNL 108
           +  L  L + D S N    + +   + +LSKL  L+      LE+   L + + L Y   
Sbjct: 229 VTPLTQLTYFDCSVNPL--TELD--VSTLSKLTTLHCIQTDLLEID--LTHNTQLIYFQA 282

Query: 109 ENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK 140
           E         +   +H + L  LD     +T+
Sbjct: 283 EGCRKIKELDV---THNTQLYLLDCQAAGITE 311

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 6e-06
 Identities = 32/122 (26%), Positives = 43/122 (35%), Gaps = 9/122 (7%)

Query: 38  RKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIP--EFIGSLSKLRYLNLSCGAPLEVPR 95
            K   G I     +  +L  L L N       +     +  L KL+ L LS         
Sbjct: 34  CKSNDGKIEGLTAEFVNLEFLSLINVG-----LISVSNLPKLPKLKKLELSENRIFGGLD 88

Query: 96  TL-RNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRD-WFQVVAKLRS 153
            L      L +LNL  + L  + +LE L  L  L+ LDL    +T   D    V   L  
Sbjct: 89  MLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQ 148

Query: 154 LK 155
           L 
Sbjct: 149 LT 150

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.1 bits (94), Expect = 7e-05
 Identities = 28/109 (25%), Positives = 41/109 (37%), Gaps = 3/109 (2%)

Query: 54  DLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHL 113
            +R L L N       I         L +L+L     L     L     L+ L L  + +
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLI-NVGLISVSNLPKLPKLKKLELSENRI 83

Query: 114 FSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSC 162
           F    +     L +L HL+LS  N  K     + + KL  LK+  L +C
Sbjct: 84  FGGLDML-AEKLPNLTHLNLSG-NKLKDISTLEPLKKLECLKSLDLFNC 130

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.4 bits (105), Expect = 6e-06
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 3/90 (3%)

Query: 48  ALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV--PRTLRNFSGLEY 105
           A     DL  +++S ND       +   +L KL  + +     L    P   +N   L+Y
Sbjct: 49  AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108

Query: 106 LNLENSHLFSVGSLEWLSHLSSLRHLDLSY 135
           L + N+ +  +  +    H      LD+  
Sbjct: 109 LLISNTGIKHLPDV-HKIHSLQKVLLDIQD 137

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.2 bits (103), Expect = 7e-06
 Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 15/132 (11%)

Query: 48  ALLKLHDLRHLDLSNNDFGGSPIPEFIGS-LSKLRYLNLSCGAPLEVPRT---------- 96
                 +L+ L++ +     S + + +GS L  L  L L  G                  
Sbjct: 188 GKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS 247

Query: 97  LRNFSGLEYLNLENSHLFSVGSLEWLS--HLSSLRHLDLSYINLTKS--RDWFQVVAKLR 152
              F  L++L + ++   +V    +L    L  L  +D+S   LT    R     V K++
Sbjct: 248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIK 307

Query: 153 SLKTFVLRSCAL 164
            LK   ++   L
Sbjct: 308 HLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 39.9 bits (92), Expect = 2e-04
 Identities = 17/107 (15%), Positives = 35/107 (32%), Gaps = 15/107 (14%)

Query: 48  ALLKLHDLRHLDL---SNNDFGGSPIPEFIGSLS-----KLRYLNL-SCGAPLEVPRTL- 97
               L +L  L L     +      +  F    S      L++L +        V     
Sbjct: 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFL 273

Query: 98  --RNFSGLEYLNLENSHLFSVGS---LEWLSHLSSLRHLDLSYINLT 139
                  LE +++    L   G+   L+ +  +  L+ +++ Y  L+
Sbjct: 274 ESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.0 bits (103), Expect = 8e-06
 Identities = 18/80 (22%), Positives = 26/80 (32%), Gaps = 4/80 (5%)

Query: 70  IPEFIGSLSKLRYLNLSCGAPLEV--PRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSS 127
               +     L  L +     L+    R LR    L  L +  S L  V + +       
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-APDAFHFTPR 81

Query: 128 LRHLDLSYINLTK-SRDWFQ 146
           L  L+LS+  L   S    Q
Sbjct: 82  LSRLNLSFNALESLSWKTVQ 101

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.4 bits (102), Expect = 1e-05
 Identities = 23/125 (18%), Positives = 46/125 (36%), Gaps = 29/125 (23%)

Query: 55  LRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLF 114
           +  L+++ N      +PE   SL    YL+        +P    +   L++L+++N+ L 
Sbjct: 82  ITVLEITQNAL--ISLPELPASL---EYLDACDNRLSTLPELPAS---LKHLDVDNNQLT 133

Query: 115 S----VGSLEWLS-----------HLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVL 159
                   LE+++             +SL  L +    LT       +     SL+   +
Sbjct: 134 MLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLT------FLPELPESLEALDV 187

Query: 160 RSCAL 164
            +  L
Sbjct: 188 STNLL 192

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 12/93 (12%)

Query: 47  PALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYL 106
                ++    L L+  +   S +P+ +    ++  L ++  A + +P    +   LEYL
Sbjct: 53  LKECLINQFSELQLNRLNL--SSLPDNLP--PQITVLEITQNALISLPELPAS---LEYL 105

Query: 107 NLENSHLFSVGSLEWLSHLSSLRHLDLSYINLT 139
           +  ++ L ++  L      +SL+HLD+    LT
Sbjct: 106 DACDNRLSTLPEL-----PASLKHLDVDNNQLT 133

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 7/114 (6%)

Query: 51  KLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLE----YL 106
            +  LRHLDLS NDF   P+ +  G+L+KL +L LS     ++   L   + L      L
Sbjct: 119 PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD--LLPVAHLHLSCILL 176

Query: 107 NLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLR 160
           +L + H+    +       +++ HL     +L  S      V  L  L+   ++
Sbjct: 177 DLVSYHIKGGETESLQIPNTTVLHLVFHPNSL-FSVQVNMSVNALGHLQLSNIK 229

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 38.7 bits (90), Expect = 5e-04
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 3/91 (3%)

Query: 51  KLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLEN 110
            L +LR L LS+N         F+     L YL++S      +       + L +L+L  
Sbjct: 74  FLSELRVLRLSHNRIRSLDFHVFL-FNQDLEYLDVSHNRLQNISC--CPMASLRHLDLSF 130

Query: 111 SHLFSVGSLEWLSHLSSLRHLDLSYINLTKS 141
           +    +   +   +L+ L  L LS     + 
Sbjct: 131 NDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL 161

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 38.7 bits (90), Expect = 6e-04
 Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 13/110 (11%)

Query: 54  DLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSC----GAPLEVPRTLRNFSGLEYLNLE 109
             + L LS N      +P+    LS+LR L LS          V    ++   LEYL++ 
Sbjct: 53  RTKALSLSQNSISELRMPDI-SFLSELRVLRLSHNRIRSLDFHVFLFNQD---LEYLDVS 108

Query: 110 NSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVL 159
           ++ L ++        ++SLRHLDLS+ N        +    L  L    L
Sbjct: 109 HNRLQNISC----CPMASLRHLDLSF-NDFDVLPVCKEFGNLTKLTFLGL 153

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 38.7 bits (90), Expect = 6e-04
 Identities = 23/128 (17%), Positives = 38/128 (29%), Gaps = 3/128 (2%)

Query: 49  LLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSC-GAPLEVPRTLRNFSGLEYLN 107
              L  L    + N  F  S    +    +++    LS    P        + S   +LN
Sbjct: 301 ETALKSLMIEHVKNQVFLFSKEALY-SVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLN 359

Query: 108 LENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPI 167
              +        +  S L  L+ L L    L        +   + SL+T  +   +L   
Sbjct: 360 FTQNVFTDS-VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH 418

Query: 168 NPSFICGW 175
                C W
Sbjct: 419 AYDRTCAW 426

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 38.7 bits (90), Expect = 6e-04
 Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 6/109 (5%)

Query: 49  LLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSC-GAPLEVPRTLRNFSGLEYLN 107
              +  L  LD+S N                +  LNLS       V R L     ++ L+
Sbjct: 399 TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLD 456

Query: 108 LENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSLK 155
           L N+ + S+   + ++HL +L+ L+++   L       F  +  L+ + 
Sbjct: 457 LHNNRIMSIP--KDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIW 503

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 42.6 bits (100), Expect = 3e-05
 Identities = 23/119 (19%), Positives = 39/119 (32%), Gaps = 4/119 (3%)

Query: 53  HDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGA--PLEVPRTLRNFSGLEYLNLEN 110
            DLR L LS                 K+  L+++      L +   L     L  L + +
Sbjct: 432 KDLRRLSLSGL-LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRD 490

Query: 111 SHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINP 169
                   L   S L ++R L +S  +++       +  K+  L   V+     P   P
Sbjct: 491 CPFGDKALLANASKLETMRSLWMSSCSVSFG-ACKLLGQKMPKLNVEVIDERGAPDSRP 548

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 25/108 (23%), Positives = 41/108 (37%), Gaps = 13/108 (12%)

Query: 45  ISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLS----KLRYLNLS-CGAPLE----VPR 95
           ++  L    D + L +SNND   + +      L     +L  L L  CG   +    +  
Sbjct: 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 221

Query: 96  TLRNFSGLEYLNLENSHLFSVG----SLEWLSHLSSLRHLDLSYINLT 139
            + + + L  L L ++ L  VG        L   S LR L +    +T
Sbjct: 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT 269

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 13/123 (10%)

Query: 54  DLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSC------GAPLEVPRTLRNFSGLEYLN 107
           D++ LD+   +   +   E +  L + + + L            ++   LR    L  LN
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARC-KDISSALRVNPALAELN 62

Query: 108 LENSHLFSVGSLEWLSHLSS----LRHLDLSYINLTKS--RDWFQVVAKLRSLKTFVLRS 161
           L ++ L  VG    L  L +    ++ L L    LT +        +  L +L+   L  
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 162 CAL 164
             L
Sbjct: 123 NLL 125

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.1 bits (97), Expect = 9e-05
 Identities = 20/97 (20%), Positives = 30/97 (30%), Gaps = 22/97 (22%)

Query: 45  ISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLE 104
           +S  L  L  L+ L LS+N  G + +      L                   L     LE
Sbjct: 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGL-------------------LDPQCRLE 145

Query: 105 YLNLENSHLFSVGSL---EWLSHLSSLRHLDLSYINL 138
            L LE   L +         L      + L +S  ++
Sbjct: 146 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 28/109 (25%), Positives = 43/109 (39%), Gaps = 15/109 (13%)

Query: 45  ISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLS----KLRYLNLSC------GAPLEVP 94
           IS AL     L  L+L +N+ G   +   +  L     K++ L+L        G    + 
Sbjct: 48  ISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC-GVLS 106

Query: 95  RTLRNFSGLEYLNLENSHLFSVG----SLEWLSHLSSLRHLDLSYINLT 139
            TLR    L+ L+L ++ L   G        L     L  L L Y +L+
Sbjct: 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS 155

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 6/92 (6%)

Query: 48  ALLKLHDLRHLDLSNNDFGGSPIPE--FIGSLSKLRYLNLSCGAPLEV--PRTLRNFSGL 103
           A   L ++  + +S +      +    F   LSK+ ++ +     L    P  L+    L
Sbjct: 50  AFSNLPNISRIYVSIDVTLQQ-LESHSFYN-LSKVTHIEIRNTRNLTYIDPDALKELPLL 107

Query: 104 EYLNLENSHLFSVGSLEWLSHLSSLRHLDLSY 135
           ++L + N+ L     L  +        L+++ 
Sbjct: 108 KFLGIFNTGLKMFPDLTKVYSTDIFFILEITD 139

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 3/88 (3%)

Query: 54  DLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV--PRTLRNFSGLEYLNLENS 111
             + L L        P   F   L  +  + +S    L+     +  N S + ++ + N+
Sbjct: 32  STQTLKLIETHLRTIPSHAFSN-LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 112 HLFSVGSLEWLSHLSSLRHLDLSYINLT 139
              +    + L  L  L+ L +    L 
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLK 118

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 41.2 bits (97), Expect = 6e-05
 Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 8/117 (6%)

Query: 47  PALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRNFSGLEY 105
                L  L  LDLS+N      +P    +L  L  L++S      +P   LR    L+ 
Sbjct: 71  QVDGTLPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128

Query: 106 LNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTK-SRDWFQVVAKLRSLKTFVLRS 161
           L L+ + L ++     L+    L  L L+  NLT+           L +L T +L+ 
Sbjct: 129 LYLKGNELKTLPP-GLLTPTPKLEKLSLANNNLTELPAGLL---NGLENLDTLLLQE 181

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 5/97 (5%)

Query: 44  TISP-ALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSG 102
           T S   L+    L  L+L   +   + +    G+L  L  L+LS      +P   +    
Sbjct: 45  TFSLATLMPYTRLTQLNLDRAEL--TKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPA 101

Query: 103 LEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLT 139
           L  L++  + L S+  L  L  L  L+ L L    L 
Sbjct: 102 LTVLDVSFNRLTSL-PLGALRGLGELQELYLKGNELK 137

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.5 bits (97), Expect = 7e-05
 Identities = 23/128 (17%), Positives = 43/128 (33%), Gaps = 10/128 (7%)

Query: 44  TISPALLKLHDLRHLDLSNND-FGGSPIPEFIGSL----SKLRYLNLSCGAPL----EVP 94
           +I   L  L D R + L   +     P+   + SL     KLR               + 
Sbjct: 397 SIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456

Query: 95  RTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSL 154
              +    + ++ L        G +E+     +L+ L++     +  R     V KL SL
Sbjct: 457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS-ERAIAAAVTKLPSL 515

Query: 155 KTFVLRSC 162
           +   ++  
Sbjct: 516 RYLWVQGY 523

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 37.9 bits (88), Expect = 5e-04
 Identities = 18/110 (16%), Positives = 45/110 (40%), Gaps = 9/110 (8%)

Query: 50  LKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLS-CG----APLEVPRTLRNFSG-L 103
           L  + ++ +D +++    S   + +  L  +  + L  C       LE    L N    +
Sbjct: 58  LDKYKIQAIDATDSCIM-SIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSM 116

Query: 104 EYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRS 153
             + + +    +   +  L H  +L++L LS  +L   ++  ++V   ++
Sbjct: 117 LEMEIISCGNVTDKGIIALHHFRNLKYLFLS--DLPGVKEKEKIVQAFKT 164

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 38.1 bits (89), Expect = 8e-04
 Identities = 14/103 (13%), Positives = 31/103 (30%), Gaps = 17/103 (16%)

Query: 55  LRHLDLSNNDFGGSPIPEFIGSL----SKLRYLNLSC------GAPLEVPRTLRNFSGLE 104
           +  LDLS N  G     E         + +  LNL             +     +   L+
Sbjct: 198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL-ENLKLLKDSLKHLQ 256

Query: 105 YLNLENSHLFSVGS------LEWLSHLSSLRHLDLSYINLTKS 141
            + L+   + ++             ++  +  +D +   +  S
Sbjct: 257 TVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	178
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.89
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.86
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.85
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.84
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.83
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.8
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.8
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.78
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.78
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.78
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.77
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.76
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.76
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.75
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.75
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.75
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.75
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.74
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.74
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.74
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.74
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.74
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.74
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.73
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.73
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.73
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.72
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.72
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.72
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.72
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.71
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.7
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.7
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.7
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.69
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.69
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.69
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.69
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.69
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.69
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.68
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.68
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.67
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.67
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.67
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.67
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.67
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.66
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.66
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.66
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.66
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.66
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.66
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.66
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.66
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.66
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.65
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.65
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.65
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.65
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.65
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.65
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.64
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.64
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.64
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.63
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.63
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.63
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.63
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.63
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.63
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.63
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.63
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.63
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.62
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.62
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.62
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.62
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.62
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.61
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.61
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.61
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.61
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.61
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.6
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.6
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.6
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.59
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.59
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.59
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.59
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.59
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.59
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.59
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.59
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.59
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.58
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.57
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.57
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.57
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.56
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.53
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.52
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.51
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.51
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.49
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.49
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.49
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.48
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.47
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.46
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.44
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.44
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.44
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.43
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.43
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.41
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.41
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.4
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.4
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.39
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.38
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.36
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.28
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.27
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.25
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.23
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.17
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.15
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.15
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.93
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.93
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.91
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.85
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.83
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.73
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.64
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.64
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.61
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.47
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.36
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.36
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.23
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.23
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.2
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.7
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.18
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.07
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.95
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.58
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.52
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.38
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.99
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.96
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.91

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.89  E-value=2.7e-23  Score=157.07  Aligned_cols=162  Identities=22%  Similarity=0.325  Sum_probs=120.8

Q ss_pred             CcCCCcee--eeeeeecCCC--CCeeEEEecCCcccccccccccc--cchhhhhCCCCCCEEEccC-CCCCCCCchhhhc
Q 048040            3 DEKRDCCK--WRGVHCRNTT--GHVKVLNLRTSDYEFARRKFLKG--TISPALLKLHDLRHLDLSN-NDFGGSPIPEFIG   75 (178)
Q Consensus         3 ~~~~~~c~--~~~~~~~~~~--~~l~~l~l~~~~~~~~~~~~l~~--~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~l~   75 (178)
                      +.+.++|.  |.||.|....  ++|+.|+++++        .+.+  .+|+.+..+++|++|++++ |.+.+. .|..+.
T Consensus        28 ~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~--------~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~   98 (313)
T 1ogq_A           28 LPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL--------NLPKPYPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIA   98 (313)
T ss_dssp             CTTSCTTTTCSTTEEECCSSSCCCEEEEEEECC--------CCSSCEECCGGGGGCTTCSEEEEEEETTEESC-CCGGGG
T ss_pred             CCCCCCCcCCCcceEeCCCCCCceEEEEECCCC--------CccCCcccChhHhCCCCCCeeeCCCCCccccc-CChhHh
Confidence            35678998  9999997654  78999999999        6777  7777888888888888884 777765 777788


Q ss_pred             ccCCCcEEeccCCCCC-ccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccC-C
Q 048040           76 SLSKLRYLNLSCGAPL-EVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLR-S  153 (178)
Q Consensus        76 ~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~-~  153 (178)
                      .+++|++|++++|.+. .+|..+..+++|++|++++|.+.+. .+..++.+++|++|++++|.+++..  +..+..++ .
T Consensus        99 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~~  175 (313)
T 1ogq_A           99 KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVGITFDGNRISGAI--PDSYGSFSKL  175 (313)
T ss_dssp             GCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEEECCSSCCEEEC--CGGGGCCCTT
T ss_pred             cCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc-CChHHhcCCCCCeEECcCCcccCcC--CHHHhhhhhc
Confidence            8888888888887554 5677777888888888888887533 2344777788888888888876432  22566666 7


Q ss_pred             CcEEEecCCCCCCCCCccccccc
Q 048040          154 LKTFVLRSCALPPINPSFICGWE  176 (178)
Q Consensus       154 L~~l~l~~n~~~~~~~~~~~~l~  176 (178)
                      |++|++++|.+.+.+|..++.++
T Consensus       176 L~~L~L~~N~l~~~~~~~~~~l~  198 (313)
T 1ogq_A          176 FTSMTISRNRLTGKIPPTFANLN  198 (313)
T ss_dssp             CCEEECCSSEEEEECCGGGGGCC
T ss_pred             CcEEECcCCeeeccCChHHhCCc
Confidence            77788877777777777666543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.86  E-value=1e-20  Score=137.01  Aligned_cols=156  Identities=20%  Similarity=0.224  Sum_probs=135.0

Q ss_pred             CCCcCCCceeeeeeeecCC---------CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCch
Q 048040            1 REDEKRDCCKWRGVHCRNT---------TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIP   71 (178)
Q Consensus         1 ~~~~~~~~c~~~~~~~~~~---------~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~   71 (178)
                      ++|.+...|.|.++.|...         ...++.|++++|        .+.+..|..+..+.+|+.|++++|.++.. .+
T Consensus        11 ~~~~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n--------~i~~~~~~~~~~l~~L~~L~L~~N~l~~i-~~   81 (229)
T 3e6j_A           11 AACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDN--------QITKLEPGVFDSLINLKELYLGSNQLGAL-PV   81 (229)
T ss_dssp             CCCCTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSS--------CCCCCCTTTTTTCTTCCEEECCSSCCCCC-CT
T ss_pred             ccCCCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCC--------ccCccCHHHhhCccCCcEEECCCCCCCCc-Ch
Confidence            4688999999999999753         256899999999        78888888899999999999999999885 45


Q ss_pred             hhhcccCCCcEEeccCCCCCccch-hccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhc
Q 048040           72 EFIGSLSKLRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAK  150 (178)
Q Consensus        72 ~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~  150 (178)
                      ..+..+++|++|++++|.+..++. .+..+++|+.|++++|++...+  ..+..+++|++|++++|.++..+.  ..+..
T Consensus        82 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~  157 (229)
T 3e6j_A           82 GVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELP--RGIERLTHLTHLALDQNQLKSIPH--GAFDR  157 (229)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCC--TTGGGCTTCSEEECCSSCCCCCCT--TTTTT
T ss_pred             hhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccC--cccccCCCCCEEECCCCcCCccCH--HHHhC
Confidence            667899999999999998777765 5789999999999999987554  447899999999999999998863  46889


Q ss_pred             cCCCcEEEecCCCCCCCCC
Q 048040          151 LRSLKTFVLRSCALPPINP  169 (178)
Q Consensus       151 l~~L~~l~l~~n~~~~~~~  169 (178)
                      +++|+.|++++|++...++
T Consensus       158 l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          158 LSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CTTCCEEECTTSCBCTTBG
T ss_pred             CCCCCEEEeeCCCccCCcc
Confidence            9999999999999987654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.85  E-value=3.3e-21  Score=146.48  Aligned_cols=164  Identities=22%  Similarity=0.295  Sum_probs=118.4

Q ss_pred             cCCCceeeeeeeecC--------CCCCeeEEEecCCccc---------------ccccccccccchhhhhCCCCCCEEEc
Q 048040            4 EKRDCCKWRGVHCRN--------TTGHVKVLNLRTSDYE---------------FARRKFLKGTISPALLKLHDLRHLDL   60 (178)
Q Consensus         4 ~~~~~c~~~~~~~~~--------~~~~l~~l~l~~~~~~---------------~~~~~~l~~~~~~~l~~l~~L~~L~l   60 (178)
                      ...++|.|.|+.|..        ...+++.|+++++.+.               .+++|.+. .+|..+..+.+|++|++
T Consensus        56 ~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~L  134 (328)
T 4fcg_A           56 NNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTL  134 (328)
T ss_dssp             TCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEE
T ss_pred             ccccccccCCcchhhhHHHHhcccccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEEC
Confidence            367889999999842        3478899999998763               44556666 67777777888888888


Q ss_pred             cCCCCCCCCchhhhcccCCCcEEeccCC-CCCccchhccC---------CCCCcEEEeeCCccccCCchHHHhccCCCCE
Q 048040           61 SNNDFGGSPIPEFIGSLSKLRYLNLSCG-APLEVPRTLRN---------FSGLEYLNLENSHLFSVGSLEWLSHLSSLRH  130 (178)
Q Consensus        61 ~~n~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~---------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  130 (178)
                      ++|.++.  +|..+..+++|++|++++| ..+.+|..+..         +++|+.|++++|++...  +..++.+++|++
T Consensus       135 s~n~l~~--lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l--p~~l~~l~~L~~  210 (328)
T 4fcg_A          135 ARNPLRA--LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL--PASIANLQNLKS  210 (328)
T ss_dssp             ESCCCCC--CCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCC--CGGGGGCTTCCE
T ss_pred             CCCcccc--CcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcc--hHhhcCCCCCCE
Confidence            8888874  6777778888888888775 55666655433         77777777777776533  344777778888


Q ss_pred             EeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCcccccc
Q 048040          131 LDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGW  175 (178)
Q Consensus       131 L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l  175 (178)
                      |++++|.+++.+.   .+..+++|++|++++|.+.+.+|..++.+
T Consensus       211 L~L~~N~l~~l~~---~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l  252 (328)
T 4fcg_A          211 LKIRNSPLSALGP---AIHHLPKLEELDLRGCTALRNYPPIFGGR  252 (328)
T ss_dssp             EEEESSCCCCCCG---GGGGCTTCCEEECTTCTTCCBCCCCTTCC
T ss_pred             EEccCCCCCcCch---hhccCCCCCEEECcCCcchhhhHHHhcCC
Confidence            8888888777654   56777777777777777777777766554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.84  E-value=8.7e-21  Score=155.59  Aligned_cols=54  Identities=24%  Similarity=0.338  Sum_probs=40.8

Q ss_pred             CCcCCCceee---eeeeecCCCCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCC
Q 048040            2 EDEKRDCCKW---RGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNND   64 (178)
Q Consensus         2 ~~~~~~~c~~---~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~   64 (178)
                      |+.++++|.|   .||.|.. .++|+.|+|+++        .+.|.+|+.+..+++|+.|++++|.
T Consensus        60 W~~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~--------~l~g~lp~~l~~L~~L~~L~Ls~N~  116 (636)
T 4eco_A           60 WNFNKELDMWGAQPGVSLNS-NGRVTGLSLEGF--------GASGRVPDAIGQLTELEVLALGSHG  116 (636)
T ss_dssp             CCCSSCGGGTTCCTTEEECT-TCCEEEEECTTS--------CCEEEECGGGGGCTTCCEEESCCGG
T ss_pred             CCCCCCcccccCCCCeEEcC-CCCEEEEEecCc--------ccCCcCChHHhcCccceEEECcCCc
Confidence            4567899999   9999965 389999999999        5666666666666666666666653

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.83  E-value=4.5e-20  Score=135.13  Aligned_cols=143  Identities=21%  Similarity=0.253  Sum_probs=110.2

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch-hccC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRN   99 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~   99 (178)
                      ..++.|++++|        .+.+..+..+..+++|++|++++|.++.. .+..+..+++|++|++++|.+..++. .+..
T Consensus        35 ~~l~~L~L~~n--------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  105 (251)
T 3m19_A           35 ADTEKLDLQST--------GLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQLASLPLGVFDH  105 (251)
T ss_dssp             TTCCEEECTTS--------CCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred             CCCCEEEccCC--------CcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCcccccChhHhcc
Confidence            44667777777        77777777788888889999988888885 56677888888888888887666654 5678


Q ss_pred             CCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCcccccc
Q 048040          100 FSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGW  175 (178)
Q Consensus       100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l  175 (178)
                      +++|+.|++++|++...+. ..+..+++|++|++++|.++..+.  ..+..+++|++|++++|++.+..+..+..+
T Consensus       106 l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  178 (251)
T 3m19_A          106 LTQLDKLYLGGNQLKSLPS-GVFDRLTKLKELRLNTNQLQSIPA--GAFDKLTNLQTLSLSTNQLQSVPHGAFDRL  178 (251)
T ss_dssp             CTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             cCCCCEEEcCCCcCCCcCh-hHhccCCcccEEECcCCcCCccCH--HHcCcCcCCCEEECCCCcCCccCHHHHhCC
Confidence            8888888888888765542 336778888888888888887752  357788888888888888887777666654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.83  E-value=5.2e-20  Score=136.19  Aligned_cols=164  Identities=22%  Similarity=0.262  Sum_probs=79.2

Q ss_pred             CCceeeeeeeecCCCCCeeEEEecCCccc-------------ccccccccccchhhhhCCCCCCEEEccCCCCCCCCchh
Q 048040            6 RDCCKWRGVHCRNTTGHVKVLNLRTSDYE-------------FARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPE   72 (178)
Q Consensus         6 ~~~c~~~~~~~~~~~~~l~~l~l~~~~~~-------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~   72 (178)
                      .++|.|.|+.|... ...+.++++++.+.             .++.|.+.+..+..+..+++|++|++++|.++.. .+.
T Consensus         2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i-~~~   79 (270)
T 2o6q_A            2 EALCKKDGGVCSCN-NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL-PAG   79 (270)
T ss_dssp             CCCBGGGTCSBEEE-TTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCC-CTT
T ss_pred             CccCCCCCCCCEeC-CCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCee-Chh
Confidence            47888888877531 22333444444332             1222244433333455555555555555555542 223


Q ss_pred             hhcccCCCcEEeccCCCCCccch-------------------------hccCCCCCcEEEeeCCccccCCchHHHhccCC
Q 048040           73 FIGSLSKLRYLNLSCGAPLEVPR-------------------------TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSS  127 (178)
Q Consensus        73 ~l~~l~~L~~L~l~~~~~~~~~~-------------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  127 (178)
                      .+..+++|++|++++|.+..+|.                         .+..+++|+.|++++|.+...+. ..+..+++
T Consensus        80 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~  158 (270)
T 2o6q_A           80 IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK-GVFDKLTS  158 (270)
T ss_dssp             TTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTT
T ss_pred             hhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH-hHccCCcc
Confidence            33445555555555554433332                         23444455555555554433321 22444555


Q ss_pred             CCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCccccc
Q 048040          128 LRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICG  174 (178)
Q Consensus       128 L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~  174 (178)
                      |++|++++|.++..+.  ..+..+++|++|++++|.+++..+..+..
T Consensus       159 L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  203 (270)
T 2o6q_A          159 LKELRLYNNQLKRVPE--GAFDKLTELKTLKLDNNQLKRVPEGAFDS  203 (270)
T ss_dssp             CCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             cceeEecCCcCcEeCh--hHhccCCCcCEEECCCCcCCcCCHHHhcc
Confidence            5555555555555431  23455556666666666665544444433

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=7.1e-19  Score=125.24  Aligned_cols=150  Identities=25%  Similarity=0.332  Sum_probs=124.8

Q ss_pred             ceeeeeeeecCCC---------CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccC
Q 048040            8 CCKWRGVHCRNTT---------GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLS   78 (178)
Q Consensus         8 ~c~~~~~~~~~~~---------~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~   78 (178)
                      .|.|.++.|....         ..++.|++++|        .+.+..+..+..+++|+.|++++|.++.. .+..+..++
T Consensus         6 ~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n--------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~   76 (208)
T 2o6s_A            6 SCSGTTVECYSQGRTSVPTGIPAQTTYLDLETN--------SLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLT   76 (208)
T ss_dssp             EEETTEEECCSSCCSSCCSCCCTTCSEEECCSS--------CCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCT
T ss_pred             EECCCEEEecCCCccCCCCCCCCCCcEEEcCCC--------ccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCC
Confidence            5789999997532         56899999999        67766666788999999999999999985 556678999


Q ss_pred             CCcEEeccCCCCCccch-hccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEE
Q 048040           79 KLRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTF  157 (178)
Q Consensus        79 ~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l  157 (178)
                      +|++|++++|.+..++. .+..+++|+.|++++|++...+. ..+..+++|++|++++|.+++.+.  ..+..+++|++|
T Consensus        77 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~--~~~~~l~~L~~L  153 (208)
T 2o6s_A           77 SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPD-GVFDKLTQLKDLRLYQNQLKSVPD--GVFDRLTSLQYI  153 (208)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEE
T ss_pred             CcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCH-hHhccCCcCCEEECCCCccceeCH--HHhccCCCccEE
Confidence            99999999997777765 57899999999999999865542 346889999999999999998863  457889999999


Q ss_pred             EecCCCCCCCCC
Q 048040          158 VLRSCALPPINP  169 (178)
Q Consensus       158 ~l~~n~~~~~~~  169 (178)
                      ++++|++.+.+|
T Consensus       154 ~l~~N~~~~~~~  165 (208)
T 2o6s_A          154 WLHDNPWDCTCP  165 (208)
T ss_dssp             ECCSCCBCCCTT
T ss_pred             EecCCCeecCCC
Confidence            999998876555

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.80  E-value=1.4e-19  Score=152.44  Aligned_cols=46  Identities=30%  Similarity=0.453  Sum_probs=34.0

Q ss_pred             CCc--eee------------eeeeecCCCCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEc
Q 048040            6 RDC--CKW------------RGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDL   60 (178)
Q Consensus         6 ~~~--c~~------------~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l   60 (178)
                      .++  |.|            .||.|.. .++|+.|+|+++        .+.|.+|+.+..+++|+.|+|
T Consensus       295 ~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~--------~L~G~ip~~l~~L~~L~~LdL  354 (876)
T 4ecn_A          295 NTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGF--------GAKGRVPDAIGQLTELKVLSF  354 (876)
T ss_dssp             SCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTT--------CCEEEECGGGGGCTTCCEEES
T ss_pred             ccCCccccccccccccccCcCceEecC-CCCEEEEECccC--------CCCCcCchHHhccccceEeee
Confidence            456  999            9999975 689999999999        555555555555555555555

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.80  E-value=1e-19  Score=152.09  Aligned_cols=168  Identities=21%  Similarity=0.292  Sum_probs=96.8

Q ss_pred             CC-cCCCceeeeeeeecCCCCCeeEEEecCCccccc----------------ccccccccc--hhhhhCCCCCCEEEccC
Q 048040            2 ED-EKRDCCKWRGVHCRNTTGHVKVLNLRTSDYEFA----------------RRKFLKGTI--SPALLKLHDLRHLDLSN   62 (178)
Q Consensus         2 ~~-~~~~~c~~~~~~~~~~~~~l~~l~l~~~~~~~~----------------~~~~l~~~~--~~~l~~l~~L~~L~l~~   62 (178)
                      +| .+.+||.|.||.|.  .++|+.|+++++.+...                .++.+.+..  |..+..+++|++|++++
T Consensus        32 ~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~  109 (768)
T 3rgz_A           32 DWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSR  109 (768)
T ss_dssp             TCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCS
T ss_pred             CCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCC
Confidence            45 57899999999997  58999999999854210                111122222  24556667777777777


Q ss_pred             CCCCCCCchh--hhcccCCCcEEeccCCC-CCccchhc-cCCCCCcEEEeeCCccccCCchHH--H--------------
Q 048040           63 NDFGGSPIPE--FIGSLSKLRYLNLSCGA-PLEVPRTL-RNFSGLEYLNLENSHLFSVGSLEW--L--------------  122 (178)
Q Consensus        63 n~~~~~~~~~--~l~~l~~L~~L~l~~~~-~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~--~--------------  122 (178)
                      |.+.+. +|.  .+..+++|++|++++|. .+..|..+ ..+++|++|++++|++.+......  +              
T Consensus       110 n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n  188 (768)
T 3rgz_A          110 NSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN  188 (768)
T ss_dssp             SEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSS
T ss_pred             CcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCC
Confidence            777654 555  66677777777777663 22333332 455666666666665533321111  2              


Q ss_pred             --------hccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCcccccc
Q 048040          123 --------SHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGW  175 (178)
Q Consensus       123 --------~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l  175 (178)
                              ..+++|++|++++|.+++...   .++.+++|++|++++|.+.+.+|..++.+
T Consensus       189 ~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l  246 (768)
T 3rgz_A          189 KISGDVDVSRCVNLEFLDVSSNNFSTGIP---FLGDCSALQHLDISGNKLSGDFSRAISTC  246 (768)
T ss_dssp             EEESCCBCTTCTTCCEEECCSSCCCSCCC---BCTTCCSCCEEECCSSCCCSCHHHHTTTC
T ss_pred             cccccCCcccCCcCCEEECcCCcCCCCCc---ccccCCCCCEEECcCCcCCCcccHHHhcC
Confidence                    344455555555555554432   25555666666666666665555554443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.78  E-value=1.3e-18  Score=125.20  Aligned_cols=147  Identities=22%  Similarity=0.301  Sum_probs=124.0

Q ss_pred             ceeeeeeeecCC---------CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccC
Q 048040            8 CCKWRGVHCRNT---------TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLS   78 (178)
Q Consensus         8 ~c~~~~~~~~~~---------~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~   78 (178)
                      .|.|..+.|...         ...++.|++++|        .+.+..+..|..+++|+.|++++|.++.. .+..|..++
T Consensus        10 ~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n--------~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~   80 (220)
T 2v9t_B           10 TCSNNIVDCRGKGLTEIPTNLPETITEIRLEQN--------TIKVIPPGAFSPYKKLRRIDLSNNQISEL-APDAFQGLR   80 (220)
T ss_dssp             EEETTEEECTTSCCSSCCSSCCTTCCEEECCSS--------CCCEECTTSSTTCTTCCEEECCSSCCCEE-CTTTTTTCS
T ss_pred             EECCCEEEcCCCCcCcCCCccCcCCCEEECCCC--------cCCCcCHhHhhCCCCCCEEECCCCcCCCc-CHHHhhCCc
Confidence            367888888642         246899999999        67766666788999999999999999985 688999999


Q ss_pred             CCcEEeccCCCCCccch-hccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEE
Q 048040           79 KLRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTF  157 (178)
Q Consensus        79 ~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l  157 (178)
                      +|++|++++|.+..+|. .+..+++|+.|++++|++.... +..+..+++|++|++++|.++..+.  ..+..+++|+.|
T Consensus        81 ~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L  157 (220)
T 2v9t_B           81 SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLR-VDAFQDLHNLNLLSLYDNKLQTIAK--GTFSPLRAIQTM  157 (220)
T ss_dssp             SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEE
T ss_pred             CCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeC-HHHcCCCCCCCEEECCCCcCCEECH--HHHhCCCCCCEE
Confidence            99999999998888876 4688999999999999986654 3458889999999999999998863  467889999999


Q ss_pred             EecCCCCCC
Q 048040          158 VLRSCALPP  166 (178)
Q Consensus       158 ~l~~n~~~~  166 (178)
                      ++++|++..
T Consensus       158 ~L~~N~~~c  166 (220)
T 2v9t_B          158 HLAQNPFIC  166 (220)
T ss_dssp             ECCSSCEEC
T ss_pred             EeCCCCcCC
Confidence            999998864

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.78  E-value=7.5e-18  Score=124.55  Aligned_cols=127  Identities=24%  Similarity=0.308  Sum_probs=98.5

Q ss_pred             ccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch-hccCCCCCcEEEeeCCccccCC
Q 048040           39 KFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENSHLFSVG  117 (178)
Q Consensus        39 ~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~  117 (178)
                      |.+.+..+..+..+.+|+.|++++|.++.. .+..+..+++|++|++++|.+..+|. .+..+++|+.|++++|++...+
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  173 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQLKSL-PPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP  173 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCccCee-CHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence            344443444556667777777777777664 45567788889999998887777765 4788999999999999986654


Q ss_pred             chHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCC
Q 048040          118 SLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINP  169 (178)
Q Consensus       118 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  169 (178)
                      . ..+..+++|++|++++|.++..+.  ..+..+++|+.|++++|++....+
T Consensus       174 ~-~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          174 E-GAFDKLTELKTLKLDNNQLKRVPE--GAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             T-TTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             h-hHhccCCCcCEEECCCCcCCcCCH--HHhccccCCCEEEecCCCeeCCCc
Confidence            3 347889999999999999998863  467889999999999999886554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.78  E-value=1.1e-18  Score=141.97  Aligned_cols=144  Identities=21%  Similarity=0.159  Sum_probs=123.0

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch-hccC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRN   99 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~   99 (178)
                      ..+++|||++|        .+++..+..|.++++|++|+|++|.++.. .+..|..+++|++|++++|.+..+|. .|..
T Consensus        52 ~~~~~LdLs~N--------~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~  122 (635)
T 4g8a_A           52 FSTKNLDLSFN--------PLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSG  122 (635)
T ss_dssp             TTCCEEECTTS--------CCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred             cCCCEEEeeCC--------CCCCCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence            56899999999        77776677899999999999999999985 56679999999999999998888865 6899


Q ss_pred             CCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCcccccc
Q 048040          100 FSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGW  175 (178)
Q Consensus       100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l  175 (178)
                      +++|++|++++|++.+.+. ..++.+++|++|++++|.++..+. +..++.+++|++|++++|++.+..|..+..+
T Consensus       123 L~~L~~L~Ls~N~l~~l~~-~~~~~L~~L~~L~Ls~N~l~~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L  196 (635)
T 4g8a_A          123 LSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKL-PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL  196 (635)
T ss_dssp             CTTCCEEECTTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCCC-CGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred             CCCCCEEECCCCcCCCCCh-hhhhcCcccCeeccccCccccCCC-chhhccchhhhhhcccCccccccccccccch
Confidence            9999999999999866542 337889999999999999987532 3478899999999999999998888877654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.77  E-value=7.5e-19  Score=134.49  Aligned_cols=161  Identities=23%  Similarity=0.343  Sum_probs=102.3

Q ss_pred             CcCCCceeeeeeeecCC-----------CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCch
Q 048040            3 DEKRDCCKWRGVHCRNT-----------TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIP   71 (178)
Q Consensus         3 ~~~~~~c~~~~~~~~~~-----------~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~   71 (178)
                      +.....|.|.++ |...           ...+++|++++|        .+.+..+..+..+++|+.|++++|.++.. .+
T Consensus        24 ~~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n--------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~   93 (353)
T 2z80_A           24 NQASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNN--------RITYISNSDLQRCVNLQALVLTSNGINTI-EE   93 (353)
T ss_dssp             ---CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTS--------CCCEECTTTTTTCTTCCEEECTTSCCCEE-CT
T ss_pred             CccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCC--------cCcccCHHHhccCCCCCEEECCCCccCcc-CH
Confidence            446678888887 5422           247899999999        55544444566777777777777777664 45


Q ss_pred             hhhcccCCCcEEeccCCCCCccchh-ccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCC-CCCcccHHHHHh
Q 048040           72 EFIGSLSKLRYLNLSCGAPLEVPRT-LRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYIN-LTKSRDWFQVVA  149 (178)
Q Consensus        72 ~~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~  149 (178)
                      ..+..+++|++|++++|.+..++.. +..+++|+.|++++|++...+....+..+++|++|++++|. ++..+  +..+.
T Consensus        94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~  171 (353)
T 2z80_A           94 DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ--RKDFA  171 (353)
T ss_dssp             TTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC--TTTTT
T ss_pred             hhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccC--HHHcc
Confidence            5666777777777777766656543 66677777777777776544321235666777777777763 44443  23556


Q ss_pred             ccCCCcEEEecCCCCCCCCCcccccc
Q 048040          150 KLRSLKTFVLRSCALPPINPSFICGW  175 (178)
Q Consensus       150 ~l~~L~~l~l~~n~~~~~~~~~~~~l  175 (178)
                      ++++|++|++++|.+.+..|..++.+
T Consensus       172 ~l~~L~~L~l~~n~l~~~~~~~l~~l  197 (353)
T 2z80_A          172 GLTFLEELEIDASDLQSYEPKSLKSI  197 (353)
T ss_dssp             TCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred             CCCCCCEEECCCCCcCccCHHHHhcc
Confidence            66677777777777666666655543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.76  E-value=7.2e-18  Score=125.40  Aligned_cols=150  Identities=22%  Similarity=0.302  Sum_probs=85.9

Q ss_pred             CCeeEEEecCCccc----------------ccccccccccchhhhhCCCCCCEEEccCCC-CCCCCchhhhcccCCCcEE
Q 048040           21 GHVKVLNLRTSDYE----------------FARRKFLKGTISPALLKLHDLRHLDLSNND-FGGSPIPEFIGSLSKLRYL   83 (178)
Q Consensus        21 ~~l~~l~l~~~~~~----------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~l~~l~~L~~L   83 (178)
                      ..++.|++++|.+.                .++.|.+.+..+..+..+++|++|++++|. +... .+..+..+++|++|
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~-~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLGRLHTL  110 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC-CTTTTTTCTTCCEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc-CHHHhcCCcCCCEE
Confidence            45777777777653                233445555455566666666676766665 5553 35556666666666


Q ss_pred             eccCCCCCcc-chhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCC
Q 048040           84 NLSCGAPLEV-PRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSC  162 (178)
Q Consensus        84 ~l~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n  162 (178)
                      ++++|.+..+ +..+..+++|+.|++++|++...+ ...++.+++|++|++++|.++..+.  ..+..+++|++|++++|
T Consensus       111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n  187 (285)
T 1ozn_A          111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP-DDTFRDLGNLTHLFLHGNRISSVPE--RAFRGLHSLDRLLLHQN  187 (285)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCEECT--TTTTTCTTCCEEECCSS
T ss_pred             ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccC-HhHhccCCCccEEECCCCcccccCH--HHhcCccccCEEECCCC
Confidence            6666644444 345556666666666666654333 1224556666666666666655541  23455555566666655


Q ss_pred             CCCCCCCccccc
Q 048040          163 ALPPINPSFICG  174 (178)
Q Consensus       163 ~~~~~~~~~~~~  174 (178)
                      .+.+..|..+..
T Consensus       188 ~l~~~~~~~~~~  199 (285)
T 1ozn_A          188 RVAHVHPHAFRD  199 (285)
T ss_dssp             CCCEECTTTTTT
T ss_pred             cccccCHhHccC
Confidence            555555554443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.76  E-value=9.5e-19  Score=140.72  Aligned_cols=156  Identities=22%  Similarity=0.259  Sum_probs=127.5

Q ss_pred             ceeeeeeeecCC-----------CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcc
Q 048040            8 CCKWRGVHCRNT-----------TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGS   76 (178)
Q Consensus         8 ~c~~~~~~~~~~-----------~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~   76 (178)
                      .|.|.++ |...           ...+++|++++|        .+.+..|..+..+++|++|++++|.++.. .+..+..
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n--------~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~   72 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFN--------KITYIGHGDLRACANLQVLILKSSRINTI-EGDAFYS   72 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSS--------CCCEECSSTTSSCTTCCEEECTTSCCCEE-CTTTTTT
T ss_pred             cCCCCce-EECCCCccccccccCCCCccEEECcCC--------ccCccChhhhhcCCcccEEECCCCCcCcc-Chhhccc
Confidence            5888887 6532           247999999999        77777777889999999999999999885 5678899


Q ss_pred             cCCCcEEeccCCCCCccch-hccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCC-CCCcccHHHHHhccCCC
Q 048040           77 LSKLRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYIN-LTKSRDWFQVVAKLRSL  154 (178)
Q Consensus        77 l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~~l~~L  154 (178)
                      +++|++|++++|.+...+. .+..+++|++|++++|++.+...+..++.+++|++|++++|. +...+  +..+.++++|
T Consensus        73 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~--~~~~~~l~~L  150 (549)
T 2z81_A           73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR--RIDFAGLTSL  150 (549)
T ss_dssp             CTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC--TTTTTTCCEE
T ss_pred             cccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccC--Hhhhhccccc
Confidence            9999999999997766655 589999999999999998765444557889999999999998 44444  2467889999


Q ss_pred             cEEEecCCCCCCCCCcccccc
Q 048040          155 KTFVLRSCALPPINPSFICGW  175 (178)
Q Consensus       155 ~~l~l~~n~~~~~~~~~~~~l  175 (178)
                      ++|++++|.+.+..|..++.+
T Consensus       151 ~~L~L~~n~l~~~~~~~l~~l  171 (549)
T 2z81_A          151 NELEIKALSLRNYQSQSLKSI  171 (549)
T ss_dssp             EEEEEEETTCCEECTTTTTTC
T ss_pred             CeeeccCCcccccChhhhhcc
Confidence            999999999998888877654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.75  E-value=4.4e-18  Score=117.24  Aligned_cols=140  Identities=24%  Similarity=0.242  Sum_probs=118.8

Q ss_pred             CCCeeEEEecCCccccccccccc-ccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCc-cchhc
Q 048040           20 TGHVKVLNLRTSDYEFARRKFLK-GTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLE-VPRTL   97 (178)
Q Consensus        20 ~~~l~~l~l~~~~~~~~~~~~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~   97 (178)
                      ...++.|++++|        .+. +.+|..+..+++|+.|++++|.++.  . ..+..+++|++|++++|.+.. +|..+
T Consensus        23 ~~~L~~L~l~~n--------~l~~~~i~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~   91 (168)
T 2ell_A           23 PAAVRELVLDNC--------KSNDGKIEGLTAEFVNLEFLSLINVGLIS--V-SNLPKLPKLKKLELSENRIFGGLDMLA   91 (168)
T ss_dssp             TTSCSEEECCSC--------BCBTTBCSSCCGGGGGCCEEEEESSCCCC--C-SSCCCCSSCCEEEEESCCCCSCCCHHH
T ss_pred             cccCCEEECCCC--------CCChhhHHHHHHhCCCCCEEeCcCCCCCC--h-hhhccCCCCCEEECcCCcCchHHHHHH
Confidence            477999999999        666 6778778899999999999999987  4 778899999999999997666 67777


Q ss_pred             cCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccH-HHHHhccCCCcEEEecCCCCCCCCCcc
Q 048040           98 RNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDW-FQVVAKLRSLKTFVLRSCALPPINPSF  171 (178)
Q Consensus        98 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~  171 (178)
                      ..+++|+.|++++|++.+.+....+..+++|++|++++|.+++.+.+ ...+..+++|++|++++|.+.. +|+.
T Consensus        92 ~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~  165 (168)
T 2ell_A           92 EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE-APDS  165 (168)
T ss_dssp             HHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB-CCSS
T ss_pred             hhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh-cccc
Confidence            77999999999999997765546688999999999999999988632 2478899999999999999875 4443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.75  E-value=6e-18  Score=121.69  Aligned_cols=149  Identities=22%  Similarity=0.212  Sum_probs=118.2

Q ss_pred             eeeeeeeecCC---------CCCeeEEEecCCcccccccccccccch-hhhhCCCCCCEEEccCCCCCCCCchhhhcccC
Q 048040            9 CKWRGVHCRNT---------TGHVKVLNLRTSDYEFARRKFLKGTIS-PALLKLHDLRHLDLSNNDFGGSPIPEFIGSLS   78 (178)
Q Consensus         9 c~~~~~~~~~~---------~~~l~~l~l~~~~~~~~~~~~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~   78 (178)
                      |.|..+.|...         ...++.|++++|        .+.+..+ ..+..+++|+.|++++|.++.. .+..|..++
T Consensus        11 C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N--------~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~   81 (220)
T 2v70_A           11 CEGTTVDCSNQKLNKIPEHIPQYTAELRLNNN--------EFTVLEATGIFKKLPQLRKINFSNNKITDI-EEGAFEGAS   81 (220)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCSEEECCSS--------CCCEECCCCCGGGCTTCCEEECCSSCCCEE-CTTTTTTCT
T ss_pred             ECCCEeEeCCCCcccCccCCCCCCCEEEcCCC--------cCCccCchhhhccCCCCCEEECCCCcCCEE-CHHHhCCCC
Confidence            56777777532         245678888888        6665544 3578899999999999999985 566889999


Q ss_pred             CCcEEeccCCCCCccch-hccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEE
Q 048040           79 KLRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTF  157 (178)
Q Consensus        79 ~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l  157 (178)
                      +|++|++++|.+..++. .+..+++|+.|++++|++.... +..+..+++|++|++++|.+++.+  +..+..+++|+.|
T Consensus        82 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L  158 (220)
T 2v70_A           82 GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVG-NDSFIGLSSVRLLSLYDNQITTVA--PGAFDTLHSLSTL  158 (220)
T ss_dssp             TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBC-TTSSTTCTTCSEEECTTSCCCCBC--TTTTTTCTTCCEE
T ss_pred             CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeEC-HhHcCCCccCCEEECCCCcCCEEC--HHHhcCCCCCCEE
Confidence            99999999997776654 6889999999999999986553 344788899999999999998884  2478889999999


Q ss_pred             EecCCCCCCCCC
Q 048040          158 VLRSCALPPINP  169 (178)
Q Consensus       158 ~l~~n~~~~~~~  169 (178)
                      ++++|++...++
T Consensus       159 ~L~~N~l~c~c~  170 (220)
T 2v70_A          159 NLLANPFNCNCY  170 (220)
T ss_dssp             ECCSCCEECSGG
T ss_pred             EecCcCCcCCCc
Confidence            999999875443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.75  E-value=2.2e-17  Score=122.24  Aligned_cols=138  Identities=27%  Similarity=0.347  Sum_probs=65.2

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch-hccC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRN   99 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~   99 (178)
                      ..++.|++++|.+        .+.  +.+..+++|++|++++|.++.. .+..+..+++|++|++++|.+..++. .+..
T Consensus        63 ~~L~~L~l~~n~l--------~~~--~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  131 (272)
T 3rfs_A           63 PNVRYLALGGNKL--------HDI--SALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELVLVENQLQSLPDGVFDK  131 (272)
T ss_dssp             TTCCEEECTTSCC--------CCC--GGGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred             CCCcEEECCCCCC--------CCc--hhhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCEEECCCCcCCccCHHHhcc
Confidence            5566777777633        321  2344455555555555555543 33334455555555555554433332 2444


Q ss_pred             CCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCccc
Q 048040          100 FSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFI  172 (178)
Q Consensus       100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~  172 (178)
                      +++|+.|++++|++.+.+ +..++.+++|++|++++|.+++.+.  ..+..+++|++|++++|.+.+.++..+
T Consensus       132 l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~  201 (272)
T 3rfs_A          132 LTNLTYLNLAHNQLQSLP-KGVFDKLTNLTELDLSYNQLQSLPE--GVFDKLTQLKDLRLYQNQLKSVPDGVF  201 (272)
T ss_dssp             CTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             CCCCCEEECCCCccCccC-HHHhccCccCCEEECCCCCcCccCH--HHhcCCccCCEEECCCCcCCccCHHHH
Confidence            555555555555543322 1223444555555555555544431  233444555555555555554444433

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.75  E-value=4.1e-18  Score=129.44  Aligned_cols=151  Identities=19%  Similarity=0.197  Sum_probs=98.5

Q ss_pred             CCeeEEEecCCccc---------------ccccccccccchhhhhC---------CCCCCEEEccCCCCCCCCchhhhcc
Q 048040           21 GHVKVLNLRTSDYE---------------FARRKFLKGTISPALLK---------LHDLRHLDLSNNDFGGSPIPEFIGS   76 (178)
Q Consensus        21 ~~l~~l~l~~~~~~---------------~~~~~~l~~~~~~~l~~---------l~~L~~L~l~~n~~~~~~~~~~l~~   76 (178)
                      ..++.|++++|.+.               .+++|.+.+.+|..+..         +++|++|++++|.++.  +|..+..
T Consensus       127 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--lp~~l~~  204 (328)
T 4fcg_A          127 AGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS--LPASIAN  204 (328)
T ss_dssp             TTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC--CCGGGGG
T ss_pred             CCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc--chHhhcC
Confidence            56788888887542               22333444455544332         6666666666666663  5666677


Q ss_pred             cCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcE
Q 048040           77 LSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKT  156 (178)
Q Consensus        77 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~  156 (178)
                      +++|++|++++|.+..+|..+..+++|+.|++++|++.+. .+..++.+++|++|++++|.+.+..  +..+..+++|++
T Consensus       205 l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~~--p~~~~~l~~L~~  281 (328)
T 4fcg_A          205 LQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRN-YPPIFGGRAPLKRLILKDCSNLLTL--PLDIHRLTQLEK  281 (328)
T ss_dssp             CTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCB-CCCCTTCCCCCCEEECTTCTTCCBC--CTTGGGCTTCCE
T ss_pred             CCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhh-hHHHhcCCCCCCEEECCCCCchhhc--chhhhcCCCCCE
Confidence            7777777777776666666666777777777777665333 2334666777777777777665542  235777888888


Q ss_pred             EEecCCCCCCCCCccccccc
Q 048040          157 FVLRSCALPPINPSFICGWE  176 (178)
Q Consensus       157 l~l~~n~~~~~~~~~~~~l~  176 (178)
                      |++++|.+.+.+|+.++.++
T Consensus       282 L~L~~n~~~~~iP~~l~~L~  301 (328)
T 4fcg_A          282 LDLRGCVNLSRLPSLIAQLP  301 (328)
T ss_dssp             EECTTCTTCCCCCGGGGGSC
T ss_pred             EeCCCCCchhhccHHHhhcc
Confidence            88888888888888777664

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.74  E-value=6.8e-18  Score=129.72  Aligned_cols=155  Identities=23%  Similarity=0.262  Sum_probs=123.1

Q ss_pred             eeeeeeeecCC---------CCCeeEEEecCCcccccccccccccchhhhh-CCCCCCEEEccCCCCCCCCchhhhcccC
Q 048040            9 CKWRGVHCRNT---------TGHVKVLNLRTSDYEFARRKFLKGTISPALL-KLHDLRHLDLSNNDFGGSPIPEFIGSLS   78 (178)
Q Consensus         9 c~~~~~~~~~~---------~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~l~~l~   78 (178)
                      |.+..+.|...         ...++.|++++|        .+.+..+..+. .+.+|+.|++++|.++.. .+..|..++
T Consensus        18 C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N--------~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~   88 (361)
T 2xot_A           18 CASNILSCSKQQLPNVPQSLPSYTALLDLSHN--------NLSRLRAEWTPTRLTNLHSLLLSHNHLNFI-SSEAFVPVP   88 (361)
T ss_dssp             EETTEEECCSSCCSSCCSSCCTTCSEEECCSS--------CCCEECTTSSSSCCTTCCEEECCSSCCCEE-CTTTTTTCT
T ss_pred             ECCCEEEeCCCCcCccCccCCCCCCEEECCCC--------CCCccChhhhhhcccccCEEECCCCcCCcc-ChhhccCCC
Confidence            45666666542         245788999998        67766666666 899999999999999985 567799999


Q ss_pred             CCcEEeccCCCCCccch-hccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHH---hccCCC
Q 048040           79 KLRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVV---AKLRSL  154 (178)
Q Consensus        79 ~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~---~~l~~L  154 (178)
                      +|++|++++|.+..++. .+..+++|+.|++++|++.... +..+..+++|++|++++|.++..+.  ..+   ..+++|
T Consensus        89 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N~l~~l~~--~~~~~~~~l~~L  165 (361)
T 2xot_A           89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVD-RNAFEDMAQLQKLYLSQNQISRFPV--ELIKDGNKLPKL  165 (361)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCSCCG--GGTC----CTTC
T ss_pred             CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEEC-HHHhCCcccCCEEECCCCcCCeeCH--HHhcCcccCCcC
Confidence            99999999998777755 6889999999999999986553 3447889999999999999999863  233   578999


Q ss_pred             cEEEecCCCCCCCCCcccccc
Q 048040          155 KTFVLRSCALPPINPSFICGW  175 (178)
Q Consensus       155 ~~l~l~~n~~~~~~~~~~~~l  175 (178)
                      +.|++++|++.+..+..+..+
T Consensus       166 ~~L~L~~N~l~~l~~~~~~~l  186 (361)
T 2xot_A          166 MLLDLSSNKLKKLPLTDLQKL  186 (361)
T ss_dssp             CEEECCSSCCCCCCHHHHHHS
T ss_pred             CEEECCCCCCCccCHHHhhhc
Confidence            999999999998776655544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.74  E-value=1.6e-17  Score=130.74  Aligned_cols=164  Identities=21%  Similarity=0.254  Sum_probs=129.1

Q ss_pred             CcCCCceeeee--eeecCCC--------CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchh
Q 048040            3 DEKRDCCKWRG--VHCRNTT--------GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPE   72 (178)
Q Consensus         3 ~~~~~~c~~~~--~~~~~~~--------~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~   72 (178)
                      |+....|.+.+  +.|....        .++++|++++|        .+.+..|..+..+++|++|++++|.+...-.+.
T Consensus         2 ~p~~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n--------~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~   73 (455)
T 3v47_A            2 DPGTSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLN--------SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNN   73 (455)
T ss_dssp             -----CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSS--------CCCEECTTTTSSCTTCCEEECCCCSTTCEECTT
T ss_pred             CCccceeEEEccccCcCCCCcccCCCCCCccCEEEecCC--------ccCcCChhHhccCccccEEECcCCcccceECcc
Confidence            34556777776  6776432        56899999999        778777888999999999999999997531356


Q ss_pred             hhcccCCCcEEeccCCCCCcc-chhccCCCCCcEEEeeCCccccCC-chHHHhccCCCCEEeccCCCCCCcccHHHHHhc
Q 048040           73 FIGSLSKLRYLNLSCGAPLEV-PRTLRNFSGLEYLNLENSHLFSVG-SLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAK  150 (178)
Q Consensus        73 ~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~  150 (178)
                      .+..+++|++|++++|.+... |..+..+++|++|++++|++.+.. ....++.+++|++|++++|.+++... ...+.+
T Consensus        74 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~  152 (455)
T 3v47_A           74 TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP-ASFFLN  152 (455)
T ss_dssp             TTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCC-CGGGGG
T ss_pred             cccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCc-ccccCC
Confidence            789999999999999966655 678999999999999999985421 11227788999999999999988732 224789


Q ss_pred             cCCCcEEEecCCCCCCCCCcccccc
Q 048040          151 LRSLKTFVLRSCALPPINPSFICGW  175 (178)
Q Consensus       151 l~~L~~l~l~~n~~~~~~~~~~~~l  175 (178)
                      +++|++|++++|.+.+..|..+..+
T Consensus       153 l~~L~~L~L~~n~l~~~~~~~l~~l  177 (455)
T 3v47_A          153 MRRFHVLDLTFNKVKSICEEDLLNF  177 (455)
T ss_dssp             CTTCCEEECTTCCBSCCCTTTSGGG
T ss_pred             CCcccEEeCCCCcccccChhhhhcc
Confidence            9999999999999999888877654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.74  E-value=3.1e-17  Score=121.39  Aligned_cols=141  Identities=23%  Similarity=0.288  Sum_probs=120.1

Q ss_pred             CCCCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch-h
Q 048040           18 NTTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-T   96 (178)
Q Consensus        18 ~~~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~   96 (178)
                      .....++.|++++|        .+.+..+..+..+++|++|++++|.++.. .+..+..+++|++|++++|.+..++. .
T Consensus        82 ~~l~~L~~L~L~~n--------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~  152 (272)
T 3rfs_A           82 KELTNLTYLILTGN--------QLQSLPNGVFDKLTNLKELVLVENQLQSL-PDGVFDKLTNLTYLNLAHNQLQSLPKGV  152 (272)
T ss_dssp             TTCTTCCEEECTTS--------CCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             cCCCCCCEEECCCC--------ccCccChhHhcCCcCCCEEECCCCcCCcc-CHHHhccCCCCCEEECCCCccCccCHHH
Confidence            34578999999999        77777777789999999999999999985 56678999999999999997777755 5


Q ss_pred             ccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCc
Q 048040           97 LRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPS  170 (178)
Q Consensus        97 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~  170 (178)
                      +..+++|+.|++++|++.+.+ ...++.+++|++|++++|.+++.+.  ..+..+++|+.|++++|++.+.+|.
T Consensus       153 ~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~~~~~~~~  223 (272)
T 3rfs_A          153 FDKLTNLTELDLSYNQLQSLP-EGVFDKLTQLKDLRLYQNQLKSVPD--GVFDRLTSLQYIWLHDNPWDCTCPG  223 (272)
T ss_dssp             TTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             hccCccCCEEECCCCCcCccC-HHHhcCCccCCEEECCCCcCCccCH--HHHhCCcCCCEEEccCCCccccCcH
Confidence            689999999999999986554 3446889999999999999998863  4678999999999999999877663

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.74  E-value=1.5e-17  Score=124.25  Aligned_cols=134  Identities=23%  Similarity=0.314  Sum_probs=69.2

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCC--------------------chhhhcccCCC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSP--------------------IPEFIGSLSKL   80 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~--------------------~~~~l~~l~~L   80 (178)
                      ..++.|++++|        .+.+..+..+..+++|+.|++++|.++..+                    +|..+..+++|
T Consensus        31 ~~l~~L~L~~N--------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L  102 (290)
T 1p9a_G           31 KDTTILHLSEN--------LLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPAL  102 (290)
T ss_dssp             TTCCEEECTTS--------CCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTC
T ss_pred             CCCCEEEcCCC--------cCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCC
Confidence            56788888888        455444555555555555555555555410                    33344444455


Q ss_pred             cEEeccCCCCCccc-hhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEe
Q 048040           81 RYLNLSCGAPLEVP-RTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVL  159 (178)
Q Consensus        81 ~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l  159 (178)
                      ++|++++|.+..+| ..+..+++|+.|++++|++...+ ...+..+++|++|++++|.++..+.  ..+..+++|++|++
T Consensus       103 ~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~l~~--~~~~~l~~L~~L~L  179 (290)
T 1p9a_G          103 TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP-PGLLTPTPKLEKLSLANNNLTELPA--GLLNGLENLDTLLL  179 (290)
T ss_dssp             CEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCSCCCT--TTTTTCTTCCEEEC
T ss_pred             CEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccC-hhhcccccCCCEEECCCCcCCccCH--HHhcCcCCCCEEEC
Confidence            55555555444443 23445555555555555543332 1223445555555555555555431  23445555555555


Q ss_pred             cCCCCC
Q 048040          160 RSCALP  165 (178)
Q Consensus       160 ~~n~~~  165 (178)
                      ++|++.
T Consensus       180 ~~N~l~  185 (290)
T 1p9a_G          180 QENSLY  185 (290)
T ss_dssp             CSSCCC
T ss_pred             CCCcCC
Confidence            555555

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.74  E-value=4.1e-18  Score=127.87  Aligned_cols=158  Identities=21%  Similarity=0.305  Sum_probs=88.0

Q ss_pred             ceeeeeeeecCCC---------CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCC-chhhhccc
Q 048040            8 CCKWRGVHCRNTT---------GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSP-IPEFIGSL   77 (178)
Q Consensus         8 ~c~~~~~~~~~~~---------~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~l~~l   77 (178)
                      .|.|.++.|....         ..++.|++++|.        +....+..+..+++|+.|++++|.++... .+..+..+
T Consensus         6 ~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~--------l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~   77 (306)
T 2z66_A            6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNK--------LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT   77 (306)
T ss_dssp             EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSC--------CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSC
T ss_pred             eeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCc--------cCccCHhHhhccccCCEEECCCCccCcccCcccccccc
Confidence            4789999997532         578999999994        44322233455555666666555554310 13334444


Q ss_pred             CCCcEEeccCCCCCccchh-------------------------ccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEe
Q 048040           78 SKLRYLNLSCGAPLEVPRT-------------------------LRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLD  132 (178)
Q Consensus        78 ~~L~~L~l~~~~~~~~~~~-------------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  132 (178)
                      ++|++|++++|.+..+|..                         +..+++|+.|++++|.+.... +..+..+++|++|+
T Consensus        78 ~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~  156 (306)
T 2z66_A           78 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF-NGIFNGLSSLEVLK  156 (306)
T ss_dssp             SCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS-TTTTTTCTTCCEEE
T ss_pred             cccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc-hhhcccCcCCCEEE
Confidence            5555555554443334433                         444555555555555543222 22245556666666


Q ss_pred             ccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCcccccc
Q 048040          133 LSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGW  175 (178)
Q Consensus       133 l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l  175 (178)
                      +++|.+++.. .+..+..+++|++|++++|.+.+..|..+..+
T Consensus       157 l~~n~l~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  198 (306)
T 2z66_A          157 MAGNSFQENF-LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL  198 (306)
T ss_dssp             CTTCEEGGGE-ECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             CCCCcccccc-chhHHhhCcCCCEEECCCCCcCCcCHHHhcCC
Confidence            6666665410 02255667777777777777776666666544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.74  E-value=3.5e-17  Score=119.70  Aligned_cols=135  Identities=22%  Similarity=0.251  Sum_probs=118.1

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch-hccC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRN   99 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~   99 (178)
                      ..++.|++++|        .+.+..+..+..+++|++|++++|.++.. .+..+..+++|++|++++|.+..++. .+..
T Consensus        59 ~~L~~L~L~~n--------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  129 (251)
T 3m19_A           59 TKLTWLNLDYN--------QLQTLSAGVFDDLTELGTLGLANNQLASL-PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR  129 (251)
T ss_dssp             TTCCEEECTTS--------CCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             ccCCEEECCCC--------cCCccCHhHhccCCcCCEEECCCCccccc-ChhHhcccCCCCEEEcCCCcCCCcChhHhcc
Confidence            67999999999        78877777889999999999999999986 56778999999999999998777765 4688


Q ss_pred             CCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCC
Q 048040          100 FSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPI  167 (178)
Q Consensus       100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~  167 (178)
                      +++|+.|++++|++...+. ..++.+++|++|++++|.++..+  +..+..+++|+.|++++|++...
T Consensus       130 l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          130 LTKLKELRLNTNQLQSIPA-GAFDKLTNLQTLSLSTNQLQSVP--HGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CCcccEEECcCCcCCccCH-HHcCcCcCCCEEECCCCcCCccC--HHHHhCCCCCCEEEeeCCceeCC
Confidence            9999999999999866543 34788999999999999999886  34678899999999999999875

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.73  E-value=2.9e-17  Score=121.61  Aligned_cols=141  Identities=21%  Similarity=0.195  Sum_probs=72.4

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccc-hhccC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVP-RTLRN   99 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~   99 (178)
                      ..++.|++++|.        +.+..+..+..+++|+.|++++|.++.. .+..+..+++|++|++++|.+..++ ..+..
T Consensus        28 ~~l~~L~ls~n~--------l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~   98 (276)
T 2z62_A           28 FSTKNLDLSFNP--------LRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSG   98 (276)
T ss_dssp             TTCCEEECTTCC--------CCEECTTTTTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred             CCccEEECCCCc--------ccccCHhHhccccCCcEEECCCCcCCcc-CHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence            458899999984        4443334455555555555555555543 3334555555555555555444332 34455


Q ss_pred             CCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCccc
Q 048040          100 FSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFI  172 (178)
Q Consensus       100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~  172 (178)
                      +++|+.|++++|++..... ..++.+++|++|++++|.++... ++..+..+++|++|++++|++.+..+..+
T Consensus        99 l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~-l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  169 (276)
T 2z62_A           99 LSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFK-LPEYFSNLTNLEHLDLSSNKIQSIYCTDL  169 (276)
T ss_dssp             CTTCCEEECTTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCC-CCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred             CccccEEECCCCCccccCc-hhcccCCCCCEEECcCCccceec-CchhhccCCCCCEEECCCCCCCcCCHHHh
Confidence            5555555555555433321 11444555555555555554421 01244455555555555555554444433

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.73  E-value=2.8e-17  Score=122.21  Aligned_cols=151  Identities=21%  Similarity=0.224  Sum_probs=102.4

Q ss_pred             CCeeEEEecCCccc----------------cccccc-ccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEE
Q 048040           21 GHVKVLNLRTSDYE----------------FARRKF-LKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYL   83 (178)
Q Consensus        21 ~~l~~l~l~~~~~~----------------~~~~~~-l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L   83 (178)
                      ..++.|++++|.+.                .+++|. +....+..+..+++|++|++++|.++.. .+..+..+++|++|
T Consensus        56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L  134 (285)
T 1ozn_A           56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL-GPGLFRGLAALQYL  134 (285)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEE-CHhHhhCCcCCCEE
Confidence            45666666666552                233344 5544466777788888888888888775 56677778888888


Q ss_pred             eccCCCCCccch-hccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCC
Q 048040           84 NLSCGAPLEVPR-TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSC  162 (178)
Q Consensus        84 ~l~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n  162 (178)
                      ++++|.+..++. .+..+++|+.|++++|++...+. ..+..+++|++|++++|.+++..  +..+..+++|+.|++++|
T Consensus       135 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n  211 (285)
T 1ozn_A          135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE-RAFRGLHSLDRLLLHQNRVAHVH--PHAFRDLGRLMTLYLFAN  211 (285)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSS
T ss_pred             ECCCCcccccCHhHhccCCCccEEECCCCcccccCH-HHhcCccccCEEECCCCcccccC--HhHccCcccccEeeCCCC
Confidence            888886666654 46777888888888887754432 23566777888888888777663  236667777777777777


Q ss_pred             CCCCCCCcccccc
Q 048040          163 ALPPINPSFICGW  175 (178)
Q Consensus       163 ~~~~~~~~~~~~l  175 (178)
                      .+.+..+..+..+
T Consensus       212 ~l~~~~~~~~~~l  224 (285)
T 1ozn_A          212 NLSALPTEALAPL  224 (285)
T ss_dssp             CCSCCCHHHHTTC
T ss_pred             cCCcCCHHHcccC
Confidence            7776665545443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.73  E-value=1.1e-17  Score=113.10  Aligned_cols=130  Identities=25%  Similarity=0.247  Sum_probs=107.3

Q ss_pred             CCeeEEEecCCccccccccccc-ccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCc-cchhcc
Q 048040           21 GHVKVLNLRTSDYEFARRKFLK-GTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLE-VPRTLR   98 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~   98 (178)
                      ..++.|++++|        .+. +.+|..+..+++|+.|++++|.++.  . ..+..+++|++|++++|.+.. +|..+.
T Consensus        17 ~~l~~L~l~~n--------~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~   85 (149)
T 2je0_A           17 SDVKELVLDNS--------RSNEGKLEGLTDEFEELEFLSTINVGLTS--I-ANLPKLNKLKKLELSDNRVSGGLEVLAE   85 (149)
T ss_dssp             GGCSEEECTTC--------BCBTTBCCSCCTTCTTCCEEECTTSCCCC--C-TTCCCCTTCCEEECCSSCCCSCTHHHHH
T ss_pred             ccCeEEEccCC--------cCChhHHHHHHhhcCCCcEEECcCCCCCC--c-hhhhcCCCCCEEECCCCcccchHHHHhh
Confidence            67899999999        676 6778778889999999999999987  4 678889999999999997666 677777


Q ss_pred             CCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccH-HHHHhccCCCcEEEecC
Q 048040           99 NFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDW-FQVVAKLRSLKTFVLRS  161 (178)
Q Consensus        99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~-~~~~~~l~~L~~l~l~~  161 (178)
                      .+++|+.|++++|++.+.+.+..++.+++|++|++++|.+++.+.+ ...+..+++|+.|++++
T Consensus        86 ~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           86 KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             HCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             hCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            7999999999999986654445688899999999999999887632 24688899999998763

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.72  E-value=2.3e-17  Score=134.17  Aligned_cols=144  Identities=19%  Similarity=0.153  Sum_probs=103.2

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCcc-chhccC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV-PRTLRN   99 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~   99 (178)
                      ..++.|++++|        .+.+..+..|.++++|++|++++|.++.. .|..|..+++|++|++++|.+..+ |..+..
T Consensus        32 ~~l~~L~Ls~n--------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~  102 (606)
T 3vq2_A           32 SSTKNIDLSFN--------PLKILKSYSFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFSG  102 (606)
T ss_dssp             TTCCEEECTTS--------CCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTSSTT
T ss_pred             CCcCEEECCCC--------CcCEeChhhccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChhhcCC
Confidence            67899999999        66666666777788888888888877764 466777788888888877755555 667777


Q ss_pred             CCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCcccccc
Q 048040          100 FSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGW  175 (178)
Q Consensus       100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l  175 (178)
                      +++|++|++++|.+...+. ..++.+++|++|++++|.+++.. ++..++++++|++|++++|.+.+..|..++.+
T Consensus       103 l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~-lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  176 (606)
T 3vq2_A          103 LTSLENLVAVETKLASLES-FPIGQLITLKKLNVAHNFIHSCK-LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL  176 (606)
T ss_dssp             CTTCCEEECTTSCCCCSSS-SCCTTCTTCCEEECCSSCCCCCC-CCGGGGTCTTCCEEECCSSCCCEECTTTTHHH
T ss_pred             cccCCEEEccCCccccccc-cccCCCCCCCEEeCCCCccccee-chHhHhhcCCCCEEEccCCcceecChhhhhhh
Confidence            7888888888887755442 22677777888888888776521 02367777788888888887777666655543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.72  E-value=5e-17  Score=127.81  Aligned_cols=158  Identities=24%  Similarity=0.262  Sum_probs=83.8

Q ss_pred             eeeeeecCC---------CCCeeEEEecCCccc----------------ccccccccccchhhhhCCCCCCEEEccCCCC
Q 048040           11 WRGVHCRNT---------TGHVKVLNLRTSDYE----------------FARRKFLKGTISPALLKLHDLRHLDLSNNDF   65 (178)
Q Consensus        11 ~~~~~~~~~---------~~~l~~l~l~~~~~~----------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~   65 (178)
                      +..+.|...         ...++.|++++|.+.                .+++|.+.+..+..|.++.+|+.|++++|.+
T Consensus        45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l  124 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL  124 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence            446666542         255788888888663                3344555555555666667777777777766


Q ss_pred             CCCCchhhhcccCCCcEEeccCCCCCccch-hccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccH
Q 048040           66 GGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDW  144 (178)
Q Consensus        66 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~  144 (178)
                      +.. .+..+..+++|++|++++|.+..++. .+..+++|+.|++++|+.........+..+++|++|++++|.++..+  
T Consensus       125 ~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--  201 (440)
T 3zyj_A          125 TTI-PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--  201 (440)
T ss_dssp             SSC-CTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--
T ss_pred             Cee-CHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc--
Confidence            653 34456666666666666665544433 34444555555554433211111122444555555555555555444  


Q ss_pred             HHHHhccCCCcEEEecCCCCCCCCCcccc
Q 048040          145 FQVVAKLRSLKTFVLRSCALPPINPSFIC  173 (178)
Q Consensus       145 ~~~~~~l~~L~~l~l~~n~~~~~~~~~~~  173 (178)
                        .+..+++|+.|++++|.+++..|..|.
T Consensus       202 --~~~~l~~L~~L~Ls~N~l~~~~~~~~~  228 (440)
T 3zyj_A          202 --NLTPLIKLDELDLSGNHLSAIRPGSFQ  228 (440)
T ss_dssp             --CCTTCSSCCEEECTTSCCCEECTTTTT
T ss_pred             --ccCCCcccCEEECCCCccCccChhhhc
Confidence              234444445555555444444444433

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.72  E-value=1.8e-17  Score=125.09  Aligned_cols=130  Identities=21%  Similarity=0.303  Sum_probs=63.8

Q ss_pred             cccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccC-CCcEEeccCCCCC-ccchhccCCCCCcEEEeeCCccccCC
Q 048040           40 FLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLS-KLRYLNLSCGAPL-EVPRTLRNFSGLEYLNLENSHLFSVG  117 (178)
Q Consensus        40 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~-~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~  117 (178)
                      .+.+.+|..+..+++|++|++++|.+++. .|..+..++ .|++|++++|.+. ..|..+..+. |+.|++++|++.+. 
T Consensus       136 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~-  212 (313)
T 1ogq_A          136 ALSGTLPPSISSLPNLVGITFDGNRISGA-IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGD-  212 (313)
T ss_dssp             EEESCCCGGGGGCTTCCEEECCSSCCEEE-CCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEEC-
T ss_pred             ccCCcCChHHhcCCCCCeEECcCCcccCc-CCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCc-
Confidence            44444444455555555555555555432 444444444 4455555444222 2333333333 44444444444322 


Q ss_pred             chHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCcccccc
Q 048040          118 SLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGW  175 (178)
Q Consensus       118 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l  175 (178)
                      .+..+..+++|++|++++|.+++...   .+..+++|++|++++|.+++.+|..+..+
T Consensus       213 ~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  267 (313)
T 1ogq_A          213 ASVLFGSDKNTQKIHLAKNSLAFDLG---KVGLSKNLNGLDLRNNRIYGTLPQGLTQL  267 (313)
T ss_dssp             CGGGCCTTSCCSEEECCSSEECCBGG---GCCCCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred             CCHHHhcCCCCCEEECCCCceeeecC---cccccCCCCEEECcCCcccCcCChHHhcC
Confidence            22334555566666666666654432   24555666666666666666666655544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.72  E-value=2.9e-17  Score=129.60  Aligned_cols=148  Identities=22%  Similarity=0.212  Sum_probs=73.6

Q ss_pred             CCeeEEEecCCccc----------------ccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEe
Q 048040           21 GHVKVLNLRTSDYE----------------FARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLN   84 (178)
Q Consensus        21 ~~l~~l~l~~~~~~----------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~   84 (178)
                      ..++.|++++|.+.                .+++|.+.+..+..|.++.+|+.|++++|.++.. .+..+..+++|++|+
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI-PSGAFEYLSKLRELW  153 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC-CTTTSSSCTTCCEEE
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc-ChhhhcccCCCCEEE
Confidence            56889999998653                3344445444445555566666666666665553 333455555566665


Q ss_pred             ccCCCCCccch-hccCCCCCcEEEeeC-------------------------CccccCCchHHHhccCCCCEEeccCCCC
Q 048040           85 LSCGAPLEVPR-TLRNFSGLEYLNLEN-------------------------SHLFSVGSLEWLSHLSSLRHLDLSYINL  138 (178)
Q Consensus        85 l~~~~~~~~~~-~~~~l~~L~~L~l~~-------------------------n~l~~~~~~~~~~~l~~L~~L~l~~n~i  138 (178)
                      +++|.+..++. .+..+++|+.|++++                         |++...+   .+..+++|++|++++|.+
T Consensus       154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~L~Ls~N~l  230 (452)
T 3zyi_A          154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP---NLTPLVGLEELEMSGNHF  230 (452)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC---CCTTCTTCCEEECTTSCC
T ss_pred             CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc---cccccccccEEECcCCcC
Confidence            55554443332 233333333333333                         3332221   123334444444444444


Q ss_pred             CCcccHHHHHhccCCCcEEEecCCCCCCCCCccccc
Q 048040          139 TKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICG  174 (178)
Q Consensus       139 ~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~  174 (178)
                      ++.+  +..+.++++|+.|++++|.+.+..|..|..
T Consensus       231 ~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  264 (452)
T 3zyi_A          231 PEIR--PGSFHGLSSLKKLWVMNSQVSLIERNAFDG  264 (452)
T ss_dssp             SEEC--GGGGTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             cccC--cccccCccCCCEEEeCCCcCceECHHHhcC
Confidence            4442  224455555555555555555555544443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.71  E-value=2.1e-16  Score=114.19  Aligned_cols=138  Identities=18%  Similarity=0.207  Sum_probs=114.7

Q ss_pred             eeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch-hccCCC
Q 048040           23 VKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRNFS  101 (178)
Q Consensus        23 l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~  101 (178)
                      .+.++++++        .+. .+|..+  ..+|+.|++++|.++.. .+..+..+++|++|++++|.+..+|. .+..++
T Consensus        21 ~~~v~c~~~--------~l~-~ip~~~--~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~   88 (229)
T 3e6j_A           21 GTTVDCRSK--------RHA-SVPAGI--PTNAQILYLHDNQITKL-EPGVFDSLINLKELYLGSNQLGALPVGVFDSLT   88 (229)
T ss_dssp             TTEEECTTS--------CCS-SCCSCC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             CCEeEccCC--------CcC-ccCCCC--CCCCCEEEcCCCccCcc-CHHHhhCccCCcEEECCCCCCCCcChhhcccCC
Confidence            467999888        443 334322  37899999999999996 68889999999999999998888865 578999


Q ss_pred             CCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCccccccc
Q 048040          102 GLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGWE  176 (178)
Q Consensus       102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~  176 (178)
                      +|+.|++++|++...+ ...+..+++|++|++++|.++..+.   .+..+++|++|++++|++.+..+..+..++
T Consensus        89 ~L~~L~Ls~N~l~~l~-~~~~~~l~~L~~L~Ls~N~l~~lp~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  159 (229)
T 3e6j_A           89 QLTVLDLGTNQLTVLP-SAVFDRLVHLKELFMCCNKLTELPR---GIERLTHLTHLALDQNQLKSIPHGAFDRLS  159 (229)
T ss_dssp             TCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCSCCT---TGGGCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred             CcCEEECCCCcCCccC-hhHhCcchhhCeEeccCCcccccCc---ccccCCCCCEEECCCCcCCccCHHHHhCCC
Confidence            9999999999986654 3446889999999999999998864   678999999999999999988777776553

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.70  E-value=6.6e-17  Score=119.68  Aligned_cols=113  Identities=23%  Similarity=0.233  Sum_probs=78.7

Q ss_pred             CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch-hcc
Q 048040           20 TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLR   98 (178)
Q Consensus        20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~   98 (178)
                      ...++.|++++|        .+.+..+..+..+++|++|++++|.++.. .+..+..+++|++|++++|.+..++. .+.
T Consensus        51 l~~L~~L~l~~n--------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  121 (276)
T 2z62_A           51 FPELQVLDLSRC--------EIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIG  121 (276)
T ss_dssp             CTTCSEEECTTC--------CCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTSCCCCSTTCCCT
T ss_pred             ccCCcEEECCCC--------cCCccCHHHccCCcCCCEEECCCCccCcc-ChhhhcCCccccEEECCCCCccccCchhcc
Confidence            367889999998        55555555667777777777777777764 45667777777777777775555543 566


Q ss_pred             CCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCc
Q 048040           99 NFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKS  141 (178)
Q Consensus        99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~  141 (178)
                      .+++|+.|++++|++.....+..++.+++|++|++++|.+++.
T Consensus       122 ~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~  164 (276)
T 2z62_A          122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  164 (276)
T ss_dssp             TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence            7777777777777765544445567777777777777777665

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.70  E-value=6.3e-17  Score=121.39  Aligned_cols=152  Identities=20%  Similarity=0.207  Sum_probs=115.6

Q ss_pred             CCeeEEEecCCccc---------------ccccccccccch-hhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEe
Q 048040           21 GHVKVLNLRTSDYE---------------FARRKFLKGTIS-PALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLN   84 (178)
Q Consensus        21 ~~l~~l~l~~~~~~---------------~~~~~~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~   84 (178)
                      ..++.|++++|.+.               .++.|.+.+..+ ..+..+++|+.|++++|.+... .+..+..+++|++|+
T Consensus        78 ~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~  156 (306)
T 2z66_A           78 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNGIFNGLSSLEVLK  156 (306)
T ss_dssp             SCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC-STTTTTTCTTCCEEE
T ss_pred             cccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc-chhhcccCcCCCEEE
Confidence            45666666666553               223345655444 4678888999999999988875 677788889999999


Q ss_pred             ccCCCCCc--cchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCC
Q 048040           85 LSCGAPLE--VPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSC  162 (178)
Q Consensus        85 l~~~~~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n  162 (178)
                      +++|.+..  .|..+..+++|+.|++++|++.+.. +..+..+++|++|++++|.+++.+.  ..+..+++|++|++++|
T Consensus       157 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N  233 (306)
T 2z66_A          157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS-PTAFNSLSSLQVLNMSHNNFFSLDT--FPYKCLNSLQVLDYSLN  233 (306)
T ss_dssp             CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTSCCSBCCS--GGGTTCTTCCEEECTTS
T ss_pred             CCCCccccccchhHHhhCcCCCEEECCCCCcCCcC-HHHhcCCCCCCEEECCCCccCccCh--hhccCcccCCEeECCCC
Confidence            99885543  5778888899999999999875543 3447788899999999999988753  35678899999999999


Q ss_pred             CCCCCCCccccccc
Q 048040          163 ALPPINPSFICGWE  176 (178)
Q Consensus       163 ~~~~~~~~~~~~l~  176 (178)
                      ++.+..|..+..++
T Consensus       234 ~l~~~~~~~~~~~~  247 (306)
T 2z66_A          234 HIMTSKKQELQHFP  247 (306)
T ss_dssp             CCCBCSSSSCCCCC
T ss_pred             CCcccCHHHHHhhh
Confidence            99988888777653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.70  E-value=1.1e-16  Score=115.09  Aligned_cols=138  Identities=20%  Similarity=0.241  Sum_probs=114.3

Q ss_pred             eEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCcc-chhccCCCC
Q 048040           24 KVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV-PRTLRNFSG  102 (178)
Q Consensus        24 ~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~  102 (178)
                      ..++++++        .+. .+|..+.  .+++.|++++|.++.. .+..+..+++|++|++++|.+..+ |..+..+++
T Consensus        14 ~~v~c~~~--------~l~-~iP~~l~--~~l~~L~l~~n~i~~i-~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~   81 (220)
T 2v9t_B           14 NIVDCRGK--------GLT-EIPTNLP--ETITEIRLEQNTIKVI-PPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS   81 (220)
T ss_dssp             TEEECTTS--------CCS-SCCSSCC--TTCCEEECCSSCCCEE-CTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSS
T ss_pred             CEEEcCCC--------CcC-cCCCccC--cCCCEEECCCCcCCCc-CHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcC
Confidence            56888888        444 3444332  6899999999999985 556889999999999999977766 678999999


Q ss_pred             CcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCccccccc
Q 048040          103 LEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGWE  176 (178)
Q Consensus       103 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~  176 (178)
                      |+.|++++|++...+. ..+..+++|++|++++|.++..+  +..+..+++|++|++++|.+++..+..+..++
T Consensus        82 L~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  152 (220)
T 2v9t_B           82 LNSLVLYGNKITELPK-SLFEGLFSLQLLLLNANKINCLR--VDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR  152 (220)
T ss_dssp             CCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             CCEEECCCCcCCccCH-hHccCCCCCCEEECCCCCCCEeC--HHHcCCCCCCCEEECCCCcCCEECHHHHhCCC
Confidence            9999999999876542 34688999999999999999885  34788999999999999999998888777653

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.69  E-value=1.5e-16  Score=127.22  Aligned_cols=140  Identities=21%  Similarity=0.239  Sum_probs=123.2

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNF  100 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l  100 (178)
                      ..++.|++++|        .+.+..|..+..+++|++|++++|.+++. .|..+..+++|++|++++|.+..+|..  .+
T Consensus        21 ~~L~~L~Ls~n--------~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l   89 (520)
T 2z7x_B           21 QKTTILNISQN--------YISELWTSDILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNKLVKISCH--PT   89 (520)
T ss_dssp             TTCSEEECCSS--------CCCCCCHHHHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSCCCEEECC--CC
T ss_pred             ccccEEECCCC--------cccccChhhccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCceeecCcc--cc
Confidence            68999999999        78888888999999999999999999985 688999999999999999988888776  89


Q ss_pred             CCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCC--cEEEecCCCC--CCCCCccccccc
Q 048040          101 SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSL--KTFVLRSCAL--PPINPSFICGWE  176 (178)
Q Consensus       101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L--~~l~l~~n~~--~~~~~~~~~~l~  176 (178)
                      ++|++|++++|++.+...+..++.+++|++|++++|.+++.     .+..+++|  ++|++++|.+  .+..|..+..+.
T Consensus        90 ~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~  164 (520)
T 2z7x_B           90 VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS-----SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN  164 (520)
T ss_dssp             CCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG-----GGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred             CCccEEeccCCccccccchhhhccCCcceEEEecCcccchh-----hccccccceeeEEEeecccccccccccccccccc
Confidence            99999999999997766666799999999999999999773     45677888  9999999999  778888777643

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.69  E-value=8.9e-17  Score=134.35  Aligned_cols=132  Identities=27%  Similarity=0.358  Sum_probs=76.7

Q ss_pred             ccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCC-ccchhccCCCCCcEEEeeCCccccCC
Q 048040           39 KFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPL-EVPRTLRNFSGLEYLNLENSHLFSVG  117 (178)
Q Consensus        39 ~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~  117 (178)
                      |.+.+.+|..+..+++|+.|++++|.+.+. .|..+..+++|++|++++|.+. .+|..+..+++|+.|++++|++.+. 
T Consensus       428 N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-  505 (768)
T 3rgz_A          428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGE-IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE-  505 (768)
T ss_dssp             SEEESCCCGGGGGCTTCCEEECCSSCCCSC-CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC-
T ss_pred             CcccCcccHHHhcCCCCCEEECCCCcccCc-CCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCc-
Confidence            355555555666666666666666666554 5556666666666666666332 4455566666666666666665322 


Q ss_pred             chHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCccccc
Q 048040          118 SLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICG  174 (178)
Q Consensus       118 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~  174 (178)
                      .+..++.+++|++|++++|.+++..  +..+..+++|+.|++++|++.+.+|..+..
T Consensus       506 ~p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~  560 (768)
T 3rgz_A          506 IPKWIGRLENLAILKLSNNSFSGNI--PAELGDCRSLIWLDLNTNLFNGTIPAAMFK  560 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCEEEC--CGGGGGCTTCCEEECCSSEEESBCCGGGGT
T ss_pred             CChHHhcCCCCCEEECCCCcccCcC--CHHHcCCCCCCEEECCCCccCCcCChHHhc
Confidence            2344566666666666666665442  235566666666666666666666655443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.69  E-value=2.7e-16  Score=124.65  Aligned_cols=151  Identities=21%  Similarity=0.228  Sum_probs=94.4

Q ss_pred             CCeeEEEecCCccc----------------ccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEe
Q 048040           21 GHVKVLNLRTSDYE----------------FARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLN   84 (178)
Q Consensus        21 ~~l~~l~l~~~~~~----------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~   84 (178)
                      ..++.|++++|.+.                .++.|.+.+..|..|.++.+|+.|++++|.++.. .+..+..+++|++|+
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~  110 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI-PLGVFTGLSNLTKLD  110 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC-CTTSSTTCTTCCEEE
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc-CcccccCCCCCCEEE
Confidence            56889999998653                2334455555555666666666666666666653 333455666666666


Q ss_pred             ccCCCCCcc-chhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCC
Q 048040           85 LSCGAPLEV-PRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCA  163 (178)
Q Consensus        85 l~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~  163 (178)
                      +++|.+..+ +..+..+++|+.|++++|.+.... +..+..+++|++|++++|.++..+  ...+..+++|+.|++++|.
T Consensus       111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~l~~n~  187 (477)
T 2id5_A          111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYIS-HRAFSGLNSLEQLTLEKCNLTSIP--TEALSHLHGLIVLRLRHLN  187 (477)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEEC-TTSSTTCTTCCEEEEESCCCSSCC--HHHHTTCTTCCEEEEESCC
T ss_pred             CCCCccccCChhHccccccCCEEECCCCccceeC-hhhccCCCCCCEEECCCCcCcccC--hhHhcccCCCcEEeCCCCc
Confidence            666644433 345566666666666666654332 223566677777777777777665  3466777777777777777


Q ss_pred             CCCCCCcccccc
Q 048040          164 LPPINPSFICGW  175 (178)
Q Consensus       164 ~~~~~~~~~~~l  175 (178)
                      +.+..+..+..+
T Consensus       188 i~~~~~~~~~~l  199 (477)
T 2id5_A          188 INAIRDYSFKRL  199 (477)
T ss_dssp             CCEECTTCSCSC
T ss_pred             CcEeChhhcccC
Confidence            776665555443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.69  E-value=1.1e-15  Score=115.71  Aligned_cols=147  Identities=20%  Similarity=0.247  Sum_probs=100.7

Q ss_pred             ceeeeeeeecCC---------CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccC
Q 048040            8 CCKWRGVHCRNT---------TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLS   78 (178)
Q Consensus         8 ~c~~~~~~~~~~---------~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~   78 (178)
                      .|.+..+.|...         ...++.|++++|        .+.+..+..+..+++|++|++++|.++.. .|..+..++
T Consensus        30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n--------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~  100 (330)
T 1xku_A           30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNN--------KITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFAPLV  100 (330)
T ss_dssp             EEETTEEECTTSCCCSCCCSCCTTCCEEECCSS--------CCCCBCTTTTTTCTTCCEEECCSSCCCCB-CTTTTTTCT
T ss_pred             cCCCeEEEecCCCccccCccCCCCCeEEECCCC--------cCCEeChhhhccCCCCCEEECCCCcCCee-CHHHhcCCC
Confidence            467777777632         256888999998        67766666788888899999999988875 577888888


Q ss_pred             CCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEE
Q 048040           79 KLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFV  158 (178)
Q Consensus        79 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~  158 (178)
                      +|++|++++|.+..+|..+.  ++|+.|++++|++.... ...+..+++|++|++++|.+......+..+.++++|++|+
T Consensus       101 ~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~  177 (330)
T 1xku_A          101 KLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVR-KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR  177 (330)
T ss_dssp             TCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBC-HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEE
T ss_pred             CCCEEECCCCcCCccChhhc--ccccEEECCCCcccccC-HhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEE
Confidence            89999888887766665443  56777777777764433 3345666677777777776653211123455666666666


Q ss_pred             ecCCCCCC
Q 048040          159 LRSCALPP  166 (178)
Q Consensus       159 l~~n~~~~  166 (178)
                      +++|.+..
T Consensus       178 l~~n~l~~  185 (330)
T 1xku_A          178 IADTNITT  185 (330)
T ss_dssp             CCSSCCCS
T ss_pred             CCCCcccc
Confidence            66665553

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.69  E-value=1.3e-16  Score=125.51  Aligned_cols=138  Identities=25%  Similarity=0.293  Sum_probs=117.5

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCcc-chhccC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV-PRTLRN   99 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~   99 (178)
                      ..++.|++++|        .+.+..|..+..+++|+.|++++|.+++. .+..+..+++|++|++++|.+..+ |..+..
T Consensus       275 ~~L~~L~l~~n--------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  345 (455)
T 3v47_A          275 SGVKTCDLSKS--------KIFALLKSVFSHFTDLEQLTLAQNEINKI-DDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN  345 (455)
T ss_dssp             SCCCEEECCSS--------CCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECGGGGTT
T ss_pred             cCceEEEecCc--------cccccchhhcccCCCCCEEECCCCccccc-ChhHhcCcccCCEEECCCCccCCcChhHhcC
Confidence            35666666666        78888888899999999999999999985 677899999999999999977666 567889


Q ss_pred             CCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCc
Q 048040          100 FSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPS  170 (178)
Q Consensus       100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~  170 (178)
                      +++|+.|++++|++.+.. +..+..+++|++|++++|.+++.+.  ..+..+++|++|++++|++.+.+|.
T Consensus       346 l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          346 LDKLEVLDLSYNHIRALG-DQSFLGLPNLKELALDTNQLKSVPD--GIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             cccCCEEECCCCcccccC-hhhccccccccEEECCCCccccCCH--hHhccCCcccEEEccCCCcccCCCc
Confidence            999999999999985553 3457889999999999999998863  4678899999999999999998874

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.69  E-value=2.5e-16  Score=128.08  Aligned_cols=149  Identities=16%  Similarity=0.077  Sum_probs=87.4

Q ss_pred             CCeeEEEecCCccc----------------ccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEe
Q 048040           21 GHVKVLNLRTSDYE----------------FARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLN   84 (178)
Q Consensus        21 ~~l~~l~l~~~~~~----------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~   84 (178)
                      ..++.|++++|.+.                .+++|.+.+..|..|.++.+|++|++++|.++.. .|..+..+++|++|+
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~  111 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFM-AETALSGPKALKHLF  111 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEE-CTTTTSSCTTCCEEE
T ss_pred             CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCccccc-ChhhhcccccccEee
Confidence            56899999999553                3334444444455555555666666666655553 455555566666666


Q ss_pred             ccCCCCCcc-chhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCc--EEEecC
Q 048040           85 LSCGAPLEV-PRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLK--TFVLRS  161 (178)
Q Consensus        85 l~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~--~l~l~~  161 (178)
                      +++|.+..+ +..+..+++|++|++++|++.+...+. +..+++|++|++++|.+++.+  +..++.+++|+  .+++++
T Consensus       112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~l~L~l~~  188 (606)
T 3t6q_A          112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAIHYLS--KEDMSSLQQATNLSLNLNG  188 (606)
T ss_dssp             CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT-TCCCTTCCEEECCSSCCCEEC--HHHHHTTTTCCSEEEECTT
T ss_pred             ccccCcccCCcchhccCCcccEEECCCCcccccCccc-ccCCcccCEEEcccCcccccC--hhhhhhhcccceeEEecCC
Confidence            666544444 345556666666666666654433222 223666666666666666553  34566666666  667777


Q ss_pred             CCCCCCCCcccc
Q 048040          162 CALPPINPSFIC  173 (178)
Q Consensus       162 n~~~~~~~~~~~  173 (178)
                      |.+.+..|..+.
T Consensus       189 n~l~~~~~~~~~  200 (606)
T 3t6q_A          189 NDIAGIEPGAFD  200 (606)
T ss_dssp             CCCCEECTTTTT
T ss_pred             CccCccChhHhh
Confidence            777666665544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.68  E-value=1.6e-16  Score=119.67  Aligned_cols=138  Identities=21%  Similarity=0.287  Sum_probs=82.9

Q ss_pred             CCeeEEEecCCcccccccccccccchhhh--hCCCCCCEEEccCCCCCCCCchhhhccc-----CCCcEEeccCCCCCcc
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPAL--LKLHDLRHLDLSNNDFGGSPIPEFIGSL-----SKLRYLNLSCGAPLEV   93 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l--~~l~~L~~L~l~~n~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~   93 (178)
                      ..+++|++++|        .+.+.+|..+  ..+++|++|++++|.+++  .|..+..+     ++|++|++++|.+..+
T Consensus        95 ~~L~~L~L~~n--------~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~~~~~~L~~L~L~~N~l~~~  164 (312)
T 1wwl_A           95 SGLQELTLENL--------EVTGTAPPPLLEATGPDLNILNLRNVSWAT--RDAWLAELQQWLKPGLKVLSIAQAHSLNF  164 (312)
T ss_dssp             SCCCEEEEEEE--------BCBSCCCCCSSSCCSCCCSEEEEESCBCSS--SSSHHHHHHTTCCTTCCEEEEESCSCCCC
T ss_pred             CCccEEEccCC--------cccchhHHHHHHhcCCCccEEEccCCCCcc--hhHHHHHHHHhhcCCCcEEEeeCCCCccc
Confidence            45666666666        6666666654  667777777777777766  34555555     6677777777655554


Q ss_pred             c-hhccCCCCCcEEEeeCCccccC-CchHHH--hccCCCCEEeccCCCCCCcccHH-HHHhccCCCcEEEecCCCCCCCC
Q 048040           94 P-RTLRNFSGLEYLNLENSHLFSV-GSLEWL--SHLSSLRHLDLSYINLTKSRDWF-QVVAKLRSLKTFVLRSCALPPIN  168 (178)
Q Consensus        94 ~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~~--~~l~~L~~L~l~~n~i~~~~~~~-~~~~~l~~L~~l~l~~n~~~~~~  168 (178)
                      + ..+..+++|+.|++++|++.+. +.+..+  +.+++|++|++++|.++..+..+ ..+..+++|++|++++|.+.+.+
T Consensus       165 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  244 (312)
T 1wwl_A          165 SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA  244 (312)
T ss_dssp             CTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred             hHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence            3 4666677777777777764321 111222  55666777777777666543222 23345566666777666666654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=1.1e-15  Score=107.82  Aligned_cols=129  Identities=18%  Similarity=0.225  Sum_probs=91.0

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCc-cchhccC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLE-VPRTLRN   99 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~   99 (178)
                      ..++.|++++|        .+. .+| .+..+++|+.|++++|.++.   +..+..+++|++|++++|.+.. .+..+..
T Consensus        44 ~~L~~L~l~~n--------~i~-~l~-~l~~l~~L~~L~l~~n~~~~---~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~  110 (197)
T 4ezg_A           44 NSLTYITLANI--------NVT-DLT-GIEYAHNIKDLTINNIHATN---YNPISGLSNLERLRIMGKDVTSDKIPNLSG  110 (197)
T ss_dssp             HTCCEEEEESS--------CCS-CCT-TGGGCTTCSEEEEESCCCSC---CGGGTTCTTCCEEEEECTTCBGGGSCCCTT
T ss_pred             CCccEEeccCC--------Ccc-ChH-HHhcCCCCCEEEccCCCCCc---chhhhcCCCCCEEEeECCccCcccChhhcC
Confidence            46788888888        444 334 46777788888888886654   2366777888888888775553 4566777


Q ss_pred             CCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCC-CCCcccHHHHHhccCCCcEEEecCCCCCCC
Q 048040          100 FSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYIN-LTKSRDWFQVVAKLRSLKTFVLRSCALPPI  167 (178)
Q Consensus       100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~  167 (178)
                      +++|+.|++++|++.+. .+..++.+++|++|++++|. ++..+    .+..+++|++|++++|.+.+.
T Consensus       111 l~~L~~L~Ls~n~i~~~-~~~~l~~l~~L~~L~L~~n~~i~~~~----~l~~l~~L~~L~l~~n~i~~~  174 (197)
T 4ezg_A          111 LTSLTLLDISHSAHDDS-ILTKINTLPKVNSIDLSYNGAITDIM----PLKTLPELKSLNIQFDGVHDY  174 (197)
T ss_dssp             CTTCCEEECCSSBCBGG-GHHHHTTCSSCCEEECCSCTBCCCCG----GGGGCSSCCEEECTTBCCCCC
T ss_pred             CCCCCEEEecCCccCcH-hHHHHhhCCCCCEEEccCCCCccccH----hhcCCCCCCEEECCCCCCcCh
Confidence            78888888888876442 23557777888888888887 66654    467777888888888877753

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.68  E-value=8.3e-17  Score=135.75  Aligned_cols=153  Identities=20%  Similarity=0.173  Sum_probs=88.5

Q ss_pred             eeeeeeecCCCCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCc-hhhhcccCCCcEEeccCC
Q 048040           10 KWRGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPI-PEFIGSLSKLRYLNLSCG   88 (178)
Q Consensus        10 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~l~~l~~L~~L~l~~~   88 (178)
                      .|..|.+  ....+++|++++|        .+.+..+..+..+.+|++|++++|..... + |..|..+++|++|++++|
T Consensus        15 ~L~~vP~--lp~~l~~LdLs~N--------~i~~i~~~~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L~~L~~L~Ls~N   83 (844)
T 3j0a_A           15 NLTQVPQ--VLNTTERLLLSFN--------YIRTVTASSFPFLEQLQLLELGSQYTPLT-IDKEAFRNLPNLRILDLGSS   83 (844)
T ss_dssp             CSSCCCS--SCTTCCEEEEESC--------CCCEECSSSCSSCCSCSEEEECTTCCCCE-ECTTTTSSCTTCCEEECTTC
T ss_pred             CCCCCCC--CCCCcCEEECCCC--------cCCccChhHCcccccCeEEeCCCCCCccc-cCHHHhcCCCCCCEEECCCC
Confidence            4555555  4578999999999        55555555566666666666666644332 3 455666666666666666


Q ss_pred             CCCcc-chhccCCCCCcEEEeeCCccccCC-chHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCC
Q 048040           89 APLEV-PRTLRNFSGLEYLNLENSHLFSVG-SLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPP  166 (178)
Q Consensus        89 ~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~  166 (178)
                      .+..+ |..+..+++|++|++++|.+.+.. ....++.+++|++|++++|.+++... ...++++++|++|++++|.+.+
T Consensus        84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~-~~~~~~L~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A           84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL-HPSFGKLNSLKSIDFSSNQIFL  162 (844)
T ss_dssp             CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC-CGGGGTCSSCCEEEEESSCCCC
T ss_pred             cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc-chhHhhCCCCCEEECCCCcCCe
Confidence            44433 455666666666666666653321 11124556666666666666655421 1245566666666666666665


Q ss_pred             CCCccccc
Q 048040          167 INPSFICG  174 (178)
Q Consensus       167 ~~~~~~~~  174 (178)
                      ..+..+..
T Consensus       163 ~~~~~l~~  170 (844)
T 3j0a_A          163 VCEHELEP  170 (844)
T ss_dssp             CCSGGGHH
T ss_pred             eCHHHccc
Confidence            55555443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.68  E-value=2.8e-16  Score=112.92  Aligned_cols=140  Identities=19%  Similarity=0.212  Sum_probs=114.3

Q ss_pred             eeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch-hccCCC
Q 048040           23 VKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRNFS  101 (178)
Q Consensus        23 l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~  101 (178)
                      .+.++++++        .+.. +|..+  ...++.|++++|.++....+..+..+++|++|++++|.+..++. .+..++
T Consensus        13 ~~~l~~s~n--------~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~   81 (220)
T 2v70_A           13 GTTVDCSNQ--------KLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS   81 (220)
T ss_dssp             TTEEECCSS--------CCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             CCEeEeCCC--------Cccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC
Confidence            358999999        5543 44433  34578999999999984123458899999999999998777755 789999


Q ss_pred             CCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCccccccc
Q 048040          102 GLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGWE  176 (178)
Q Consensus       102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~  176 (178)
                      +|+.|++++|++.+.. +..+..+++|++|++++|.+++.+  +..+..+++|++|++++|.+++..|..|..++
T Consensus        82 ~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  153 (220)
T 2v70_A           82 GVNEILLTSNRLENVQ-HKMFKGLESLKTLMLRSNRITCVG--NDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH  153 (220)
T ss_dssp             TCCEEECCSSCCCCCC-GGGGTTCSSCCEEECTTSCCCCBC--TTSSTTCTTCSEEECTTSCCCCBCTTTTTTCT
T ss_pred             CCCEEECCCCccCccC-HhHhcCCcCCCEEECCCCcCCeEC--HhHcCCCccCCEEECCCCcCCEECHHHhcCCC
Confidence            9999999999986654 345788999999999999999884  24788999999999999999998898887654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.67  E-value=4e-16  Score=128.52  Aligned_cols=151  Identities=20%  Similarity=0.185  Sum_probs=89.0

Q ss_pred             CCeeEEEecCCccc----------------ccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEe
Q 048040           21 GHVKVLNLRTSDYE----------------FARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLN   84 (178)
Q Consensus        21 ~~l~~l~l~~~~~~----------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~   84 (178)
                      ..+++|++++|.+.                .++.|.+.+..|..+..+++|++|++++|.++.. .+..|..+++|++|+
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL-SDKTFAFCTNLTELH  103 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEE
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCcc-ChhhhccCCCCCEEE
Confidence            57899999998553                2233445555555566666666666666666553 233456666666666


Q ss_pred             ccCCCCCccc-hhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHh--ccCCCcEEEecC
Q 048040           85 LSCGAPLEVP-RTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVA--KLRSLKTFVLRS  161 (178)
Q Consensus        85 l~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~--~l~~L~~l~l~~  161 (178)
                      +++|.+..++ ..+..+++|++|++++|.+.+.. +..++.+++|++|++++|.+++.+.  ..++  .+++|++|++++
T Consensus       104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~~~~~L~~L~L~~  180 (680)
T 1ziw_A          104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK-LGTQVQLENLQELLLSNNKIQALKS--EELDIFANSSLKKLELSS  180 (680)
T ss_dssp             CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCC-CCSSSCCTTCCEEECCSSCCCCBCH--HHHGGGTTCEESEEECTT
T ss_pred             CCCCccCccChhHccccCCCCEEECCCCcccccC-chhhcccccCCEEEccCCcccccCH--HHhhccccccccEEECCC
Confidence            6666444443 35566666666666666654332 2224556666666666666666542  2332  346677777777


Q ss_pred             CCCCCCCCcccccc
Q 048040          162 CALPPINPSFICGW  175 (178)
Q Consensus       162 n~~~~~~~~~~~~l  175 (178)
                      |.+.+..|..+..+
T Consensus       181 n~l~~~~~~~~~~l  194 (680)
T 1ziw_A          181 NQIKEFSPGCFHAI  194 (680)
T ss_dssp             CCCCCBCTTGGGGS
T ss_pred             CcccccChhhhhhh
Confidence            77776666655443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.67  E-value=3.8e-16  Score=126.22  Aligned_cols=140  Identities=18%  Similarity=0.138  Sum_probs=113.5

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNF  100 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l  100 (178)
                      ..++.|++++|        .+.+..+..+..+++|++|++++|.++.. .|..|..+++|++|++++|.+..+|..  .+
T Consensus        52 ~~L~~L~Ls~N--------~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l  120 (562)
T 3a79_B           52 PRTKALSLSQN--------SISELRMPDISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNRLQNISCC--PM  120 (562)
T ss_dssp             TTCCEEECCSS--------CCCCCCGGGTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECTTSCCCEECSC--CC
T ss_pred             CCcCEEECCCC--------CccccChhhhccCCCccEEECCCCCCCcC-CHHHhCCCCCCCEEECCCCcCCccCcc--cc
Confidence            45666666666        77777778889999999999999999885 577889999999999999987778766  78


Q ss_pred             CCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCC--cEEEecCCCC--CCCCCccccccc
Q 048040          101 SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSL--KTFVLRSCAL--PPINPSFICGWE  176 (178)
Q Consensus       101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L--~~l~l~~n~~--~~~~~~~~~~l~  176 (178)
                      ++|++|++++|++...+.+..++.+++|++|++++|.++..     .+..+++|  ++|++++|.+  .+..|..+..+.
T Consensus       121 ~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~  195 (562)
T 3a79_B          121 ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-----DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPN  195 (562)
T ss_dssp             TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT-----TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECC
T ss_pred             ccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC-----chhhhhhceeeEEEeecccccccccCcccccccC
Confidence            99999999999987766556688999999999999998764     23455555  9999999988  777887776643

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.67  E-value=3.6e-16  Score=123.36  Aligned_cols=151  Identities=25%  Similarity=0.245  Sum_probs=110.4

Q ss_pred             CCeeEEEecCCccc----------------ccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhh-----------
Q 048040           21 GHVKVLNLRTSDYE----------------FARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEF-----------   73 (178)
Q Consensus        21 ~~l~~l~l~~~~~~----------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~-----------   73 (178)
                      ..++.|++++|.+.                .+++|.+.+..+..+..+++|+.|++++|.++.. .+..           
T Consensus        99 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~  177 (452)
T 3zyi_A           99 HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESI-PSYAFNRVPSLMRLD  177 (452)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCccee-CHhHHhcCCcccEEe
Confidence            45666777766653                3345566655555677788888888888877653 2223           


Q ss_pred             --------------hcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCC
Q 048040           74 --------------IGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLT  139 (178)
Q Consensus        74 --------------l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~  139 (178)
                                    +..+++|++|++++|.+..+| .+..+++|+.|++++|++.+.. +..+..+++|+.|++++|.++
T Consensus       178 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~n~l~  255 (452)
T 3zyi_A          178 LGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIR-PGSFHGLSSLKKLWVMNSQVS  255 (452)
T ss_dssp             CCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEEC-GGGGTTCTTCCEEECTTSCCC
T ss_pred             CCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccC-cccccCccCCCEEEeCCCcCc
Confidence                          445566666666666555554 4667889999999999986654 455889999999999999998


Q ss_pred             CcccHHHHHhccCCCcEEEecCCCCCCCCCccccccc
Q 048040          140 KSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGWE  176 (178)
Q Consensus       140 ~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~  176 (178)
                      ..+  +..+.++++|+.|++++|++++..+..+..++
T Consensus       256 ~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  290 (452)
T 3zyi_A          256 LIE--RNAFDGLASLVELNLAHNNLSSLPHDLFTPLR  290 (452)
T ss_dssp             EEC--TTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred             eEC--HHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence            885  34788999999999999999988887776553

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.67  E-value=1.9e-16  Score=112.59  Aligned_cols=139  Identities=18%  Similarity=0.128  Sum_probs=116.7

Q ss_pred             CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch-hcc
Q 048040           20 TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLR   98 (178)
Q Consensus        20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~   98 (178)
                      ...++.|++++|        .+.+..+..+..+.+|++|++++|.++.. .+..+..+++|++|++++|.+..++. .+.
T Consensus        51 l~~L~~L~l~~n--------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  121 (208)
T 2o6s_A           51 LTSLTQLYLGGN--------KLQSLPNGVFNKLTSLTYLNLSTNQLQSL-PNGVFDKLTQLKELALNTNQLQSLPDGVFD  121 (208)
T ss_dssp             CTTCSEEECCSS--------CCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             cccCcEEECCCC--------ccCccChhhcCCCCCcCEEECCCCcCCcc-CHhHhcCccCCCEEEcCCCcCcccCHhHhc
Confidence            367999999999        67766566778999999999999999985 55667899999999999997777765 578


Q ss_pred             CCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCcccccccc
Q 048040           99 NFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGWEI  177 (178)
Q Consensus        99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~  177 (178)
                      .+++|+.|++++|++.+.+. ..+..+++|++|++++|.+..         .++.|+.|+++.|.+++.+|+.++.++-
T Consensus       122 ~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~---------~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          122 KLTQLKDLRLYQNQLKSVPD-GVFDRLTSLQYIWLHDNPWDC---------TCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             TCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSCCBCC---------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             cCCcCCEEECCCCccceeCH-HHhccCCCccEEEecCCCeec---------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence            89999999999999865543 447889999999999998764         3567888899999999999998887763

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.67  E-value=1.8e-16  Score=127.86  Aligned_cols=142  Identities=21%  Similarity=0.188  Sum_probs=83.2

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccc-hhccC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVP-RTLRN   99 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~   99 (178)
                      ..++.|++++|        .+.+..+..|.++++|++|++++|.++.. .+..|..+++|++|++++|.+..++ ..+..
T Consensus        28 ~~l~~L~Ls~n--------~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~   98 (570)
T 2z63_A           28 FSTKNLDLSFN--------PLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSG   98 (570)
T ss_dssp             SSCCEEECCSC--------CCCEECTTTTTTCSSCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred             ccccEEEccCC--------ccCccChhHhhCCCCceEEECCCCcCCcc-CcccccCchhCCEEeCcCCcCCccCHhhhcC
Confidence            56889999999        45544455566666666666666666653 3455666666666666666544443 35566


Q ss_pred             CCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCcccc
Q 048040          100 FSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFIC  173 (178)
Q Consensus       100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~  173 (178)
                      +++|++|++++|++...+.. .++.+++|++|++++|.++.... +..++++++|++|++++|.+.+..|..++
T Consensus        99 l~~L~~L~L~~n~l~~l~~~-~~~~l~~L~~L~L~~n~l~~~~l-p~~~~~l~~L~~L~l~~n~l~~~~~~~~~  170 (570)
T 2z63_A           99 LSSLQKLVAVETNLASLENF-PIGHLKTLKELNVAHNLIQSFKL-PEYFSNLTNLEHLDLSSNKIQSIYCTDLR  170 (570)
T ss_dssp             CTTCCEEECTTSCCCCSTTC-SCTTCTTCCEEECCSSCCCCCCC-CGGGGGCTTCCEEECTTSCCCEECGGGGH
T ss_pred             ccccccccccccccccCCCc-cccccccccEEecCCCccceecC-hhhhcccCCCCEEeCcCCccceecHHHcc
Confidence            66666666666665443321 15556666666666666554210 12455666666666666666555444443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.66  E-value=3.3e-16  Score=123.19  Aligned_cols=152  Identities=20%  Similarity=0.180  Sum_probs=88.7

Q ss_pred             CCeeEEEecCCccc----------------ccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEe
Q 048040           21 GHVKVLNLRTSDYE----------------FARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLN   84 (178)
Q Consensus        21 ~~l~~l~l~~~~~~----------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~   84 (178)
                      ..++.|++++|.+.                .+++|.+.+..+..+..+++|+.|++++|.++.. .+..+..+++|++|+
T Consensus        88 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L~  166 (440)
T 3zyj_A           88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESI-PSYAFNRIPSLRRLD  166 (440)
T ss_dssp             SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEE-CTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccccc-CHHHhhhCcccCEeC
Confidence            45666666666553                3344566655555778888888888888888764 344566666666666


Q ss_pred             ccCC-CCCccch-hccCCCCCcEEEeeCCccccCCc---------------------hHHHhccCCCCEEeccCCCCCCc
Q 048040           85 LSCG-APLEVPR-TLRNFSGLEYLNLENSHLFSVGS---------------------LEWLSHLSSLRHLDLSYINLTKS  141 (178)
Q Consensus        85 l~~~-~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~---------------------~~~~~~l~~L~~L~l~~n~i~~~  141 (178)
                      +++| .+..++. .+..+++|+.|++++|++...+.                     +..+..+++|+.|++++|.++..
T Consensus       167 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  246 (440)
T 3zyj_A          167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI  246 (440)
T ss_dssp             CCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred             CCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEE
Confidence            6664 4444433 45555555555555555433321                     12244455555555555555544


Q ss_pred             ccHHHHHhccCCCcEEEecCCCCCCCCCcccccc
Q 048040          142 RDWFQVVAKLRSLKTFVLRSCALPPINPSFICGW  175 (178)
Q Consensus       142 ~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l  175 (178)
                      +  +..+.++++|+.|++++|++++..+..+..+
T Consensus       247 ~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  278 (440)
T 3zyj_A          247 E--RNAFDNLQSLVEINLAHNNLTLLPHDLFTPL  278 (440)
T ss_dssp             C--TTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred             C--hhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence            3  2345566666777777777666655555443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.66  E-value=8e-16  Score=114.94  Aligned_cols=124  Identities=22%  Similarity=0.120  Sum_probs=105.0

Q ss_pred             cccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch-hccCCCCCcEEEeeCCccccC
Q 048040           38 RKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENSHLFSV  116 (178)
Q Consensus        38 ~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~  116 (178)
                      +|.+. .+|..+..+++|++|++++|.++.. .+..|..+++|++|++++|.+..+|. .+..+++|+.|++++|++...
T Consensus        86 ~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  163 (290)
T 1p9a_G           86 HNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL-PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (290)
T ss_dssp             SSCCS-SCCCCTTTCTTCCEEECCSSCCCCC-CSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             CCcCC-cCchhhccCCCCCEEECCCCcCccc-CHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence            33665 5677788999999999999999985 56789999999999999998777765 568899999999999998765


Q ss_pred             CchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCC
Q 048040          117 GSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPI  167 (178)
Q Consensus       117 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~  167 (178)
                      +. ..+..+++|++|++++|.++..+.   .+..+..|+.+++++|++...
T Consensus       164 ~~-~~~~~l~~L~~L~L~~N~l~~ip~---~~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          164 PA-GLLNGLENLDTLLLQENSLYTIPK---GFFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             CT-TTTTTCTTCCEEECCSSCCCCCCT---TTTTTCCCSEEECCSCCBCCS
T ss_pred             CH-HHhcCcCCCCEEECCCCcCCccCh---hhcccccCCeEEeCCCCccCc
Confidence            53 446789999999999999998875   667788999999999998753

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.66  E-value=2.2e-16  Score=128.36  Aligned_cols=146  Identities=19%  Similarity=0.197  Sum_probs=121.1

Q ss_pred             CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccc-hhcc
Q 048040           20 TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVP-RTLR   98 (178)
Q Consensus        20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~   98 (178)
                      ...+++|++++|        .+.+..|..|.++++|++|++++|.++.. .|..+..+++|++|++++|.+..++ ..+.
T Consensus        55 l~~L~~L~Ls~n--------~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~  125 (606)
T 3vq2_A           55 FSELQWLDLSRC--------EIETIEDKAWHGLHHLSNLILTGNPIQSF-SPGSFSGLTSLENLVAVETKLASLESFPIG  125 (606)
T ss_dssp             CTTCCEEECTTC--------CCCEECTTTTTTCTTCCEEECTTCCCCCC-CTTSSTTCTTCCEEECTTSCCCCSSSSCCT
T ss_pred             CccCcEEeCCCC--------cccccCHHHhhchhhcCEeECCCCccccc-ChhhcCCcccCCEEEccCCccccccccccC
Confidence            367999999999        77877788899999999999999999986 6889999999999999999777665 5789


Q ss_pred             CCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcc-cHHHHHhccCC-CcEEEecCCCCCCCCCccccc
Q 048040           99 NFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSR-DWFQVVAKLRS-LKTFVLRSCALPPINPSFICG  174 (178)
Q Consensus        99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~~~~~~l~~-L~~l~l~~n~~~~~~~~~~~~  174 (178)
                      .+++|++|++++|.+.+...+..++.+++|++|++++|.+++.+ .....+.+++. +.++++++|.+.+..+..+..
T Consensus       126 ~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~  203 (606)
T 3vq2_A          126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG  203 (606)
T ss_dssp             TCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTT
T ss_pred             CCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccC
Confidence            99999999999999876555677999999999999999998874 21233344433 558999999999777766553

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.66  E-value=6.6e-16  Score=117.16  Aligned_cols=94  Identities=24%  Similarity=0.355  Sum_probs=54.9

Q ss_pred             eeeeeeeecCC---------CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCC
Q 048040            9 CKWRGVHCRNT---------TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSK   79 (178)
Q Consensus         9 c~~~~~~~~~~---------~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~   79 (178)
                      |.+..+.|...         ...++.|++++|        .+.+..+..+..+++|+.|++++|.++.. .|..+..+++
T Consensus        33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n--------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~  103 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNN--------DISELRKDDFKGLQHLYALVLVNNKISKI-HEKAFSPLRK  103 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCCEEECCSS--------CCCEECTTTTTTCTTCCEEECCSSCCCEE-CGGGSTTCTT
T ss_pred             ccCCEEECCCCCccccCCCCCCCCeEEECCCC--------cCCccCHhHhhCCCCCcEEECCCCccCcc-CHhHhhCcCC
Confidence            67777777532         246888999988        44444444556666666666666666653 4555666666


Q ss_pred             CcEEeccCCCCCccchhccCCCCCcEEEeeCCcc
Q 048040           80 LRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHL  113 (178)
Q Consensus        80 L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l  113 (178)
                      |++|++++|.+..+|..+.  ++|++|++++|++
T Consensus       104 L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i  135 (332)
T 2ft3_A          104 LQKLYISKNHLVEIPPNLP--SSLVELRIHDNRI  135 (332)
T ss_dssp             CCEEECCSSCCCSCCSSCC--TTCCEEECCSSCC
T ss_pred             CCEEECCCCcCCccCcccc--ccCCEEECCCCcc
Confidence            6666666665444443322  3444444444444

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.66  E-value=5.5e-17  Score=134.89  Aligned_cols=123  Identities=20%  Similarity=0.113  Sum_probs=99.1

Q ss_pred             chhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhc
Q 048040           45 ISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSH  124 (178)
Q Consensus        45 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  124 (178)
                      .+..+..+..|+.|+|++|.+..  +|..+..+++|++|+|++|.+..+|..+..+++|+.|++++|++...  +..++.
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l--p~~~~~  291 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSL--PAELGS  291 (727)
T ss_dssp             ------CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSC--CSSGGG
T ss_pred             ChhhhccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCcc--ChhhcC
Confidence            45678888999999999999986  67777789999999999997778888888999999999999998644  455788


Q ss_pred             cCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCccccc
Q 048040          125 LSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICG  174 (178)
Q Consensus       125 l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~  174 (178)
                      +++|++|++++|.|+..|.   .++.+++|++|++++|++.+.+|..+..
T Consensus       292 l~~L~~L~L~~N~l~~lp~---~~~~l~~L~~L~L~~N~l~~~~p~~~~~  338 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVTTLPW---EFGNLCNLQFLGVEGNPLEKQFLKILTE  338 (727)
T ss_dssp             GTTCSEEECCSSCCCCCCS---STTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred             CCCCCEEECCCCCCCccCh---hhhcCCCccEEeCCCCccCCCChHHHhh
Confidence            8999999999999987764   5888999999999999998877776644

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.66  E-value=4.3e-16  Score=113.01  Aligned_cols=133  Identities=17%  Similarity=0.149  Sum_probs=82.7

Q ss_pred             CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCC-CCCCCchhhhcccCCCcEEeccC-CCCCccc-hh
Q 048040           20 TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNND-FGGSPIPEFIGSLSKLRYLNLSC-GAPLEVP-RT   96 (178)
Q Consensus        20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~-~~   96 (178)
                      ...++.|++++|        .+.+..+..+..+++|+.|++++|. ++.. .+..+..+++|++|++++ |.+..++ ..
T Consensus        30 ~~~l~~L~l~~n--------~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~~~  100 (239)
T 2xwt_C           30 PPSTQTLKLIET--------HLRTIPSHAFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDPDA  100 (239)
T ss_dssp             CTTCCEEEEESC--------CCSEECTTTTTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred             CCcccEEEEeCC--------cceEECHHHccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence            357899999999        5555445566677777777777775 6653 344667777777777776 6665554 35


Q ss_pred             ccCCCCCcEEEeeCCccccCCchHHHhccCCCC---EEeccCC-CCCCcccHHHHHhccCCCc-EEEecCCCCCC
Q 048040           97 LRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLR---HLDLSYI-NLTKSRDWFQVVAKLRSLK-TFVLRSCALPP  166 (178)
Q Consensus        97 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~---~L~l~~n-~i~~~~~~~~~~~~l~~L~-~l~l~~n~~~~  166 (178)
                      +..+++|+.|++++|++.+.+.   +..+++|+   +|++++| .++..+.  ..+.++++|+ +|++++|.+..
T Consensus       101 f~~l~~L~~L~l~~n~l~~lp~---~~~l~~L~~L~~L~l~~N~~l~~i~~--~~~~~l~~L~~~L~l~~n~l~~  170 (239)
T 2xwt_C          101 LKELPLLKFLGIFNTGLKMFPD---LTKVYSTDIFFILEITDNPYMTSIPV--NAFQGLCNETLTLKLYNNGFTS  170 (239)
T ss_dssp             EECCTTCCEEEEEEECCCSCCC---CTTCCBCCSEEEEEEESCTTCCEECT--TTTTTTBSSEEEEECCSCCCCE
T ss_pred             hCCCCCCCEEeCCCCCCccccc---cccccccccccEEECCCCcchhhcCc--ccccchhcceeEEEcCCCCCcc
Confidence            6667777777777776654432   44445554   6666666 5555431  2345555555 55555555553

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.66  E-value=4.9e-16  Score=120.26  Aligned_cols=139  Identities=19%  Similarity=0.204  Sum_probs=92.0

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccc-hhccC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVP-RTLRN   99 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~   99 (178)
                      ..++.++++++        .+....+..+..+++|++|++++|.++.. .+..+..+++|++|++++|.+..++ ..+..
T Consensus        45 ~~l~~l~l~~~--------~l~~l~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  115 (390)
T 3o6n_A           45 NNQKIVTFKNS--------TMRKLPAALLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN  115 (390)
T ss_dssp             CCCSEEEEESC--------EESEECTHHHHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCceEEEecCC--------chhhCChhHhcccccCcEEECCCCccccc-ChhhccCCCCcCEEECCCCCCCcCCHHHhcC
Confidence            55677888777        55544344566777777777777777764 4456777777777777777555553 35677


Q ss_pred             CCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCcc
Q 048040          100 FSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSF  171 (178)
Q Consensus       100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~  171 (178)
                      +++|+.|++++|++...+. ..++.+++|++|++++|.++..+  +..+..+++|++|++++|.+++.....
T Consensus       116 l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~  184 (390)
T 3o6n_A          116 VPLLTVLVLERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIE--DDTFQATTSLQNLQLSSNRLTHVDLSL  184 (390)
T ss_dssp             CTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCC--TTTTSSCTTCCEEECCSSCCSBCCGGG
T ss_pred             CCCCCEEECCCCccCcCCH-HHhcCCCCCcEEECCCCccCccC--hhhccCCCCCCEEECCCCcCCcccccc
Confidence            7777777777777654432 22466777777777777776664  235667777777777777776554333

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.66  E-value=1.7e-15  Score=121.24  Aligned_cols=142  Identities=19%  Similarity=0.187  Sum_probs=106.9

Q ss_pred             CCCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCC-CchhhhcccCCCcEEeccCCCCCc-cch-
Q 048040           19 TTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGS-PIPEFIGSLSKLRYLNLSCGAPLE-VPR-   95 (178)
Q Consensus        19 ~~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~-~~~-   95 (178)
                      ....++.|++++|        .+.+..|..+..+++|+.|++++|.+++. .+|..+..+++|++|++++|.+.. +|. 
T Consensus       322 ~l~~L~~L~Ls~n--------~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~  393 (520)
T 2z7x_B          322 KISPFLHLDFSNN--------LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG  393 (520)
T ss_dssp             SCCCCCEEECCSS--------CCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC
T ss_pred             hCCcccEEEeECC--------ccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc
Confidence            3456778888887        78887888888999999999999999862 145678899999999999996665 666 


Q ss_pred             hccCCCCCcEEEeeCCccccCCchHHHhcc-CCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCccccc
Q 048040           96 TLRNFSGLEYLNLENSHLFSVGSLEWLSHL-SSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICG  174 (178)
Q Consensus        96 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~  174 (178)
                      .+..+++|+.|++++|++.+..    ...+ ++|++|++++|.++..+.   .+..+++|++|++++|+++..++..+..
T Consensus       394 ~~~~l~~L~~L~Ls~N~l~~~~----~~~l~~~L~~L~Ls~N~l~~ip~---~~~~l~~L~~L~L~~N~l~~l~~~~~~~  466 (520)
T 2z7x_B          394 DCSWTKSLLSLNMSSNILTDTI----FRCLPPRIKVLDLHSNKIKSIPK---QVVKLEALQELNVASNQLKSVPDGIFDR  466 (520)
T ss_dssp             SCCCCTTCCEEECCSSCCCGGG----GGSCCTTCCEEECCSSCCCCCCG---GGGGCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             hhccCccCCEEECcCCCCCcch----hhhhcccCCEEECCCCcccccch---hhhcCCCCCEEECCCCcCCccCHHHhcc
Confidence            3677888899999888874332    2222 588888888888887664   4558888888888888888544443554


Q ss_pred             c
Q 048040          175 W  175 (178)
Q Consensus       175 l  175 (178)
                      +
T Consensus       467 l  467 (520)
T 2z7x_B          467 L  467 (520)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.66  E-value=3.2e-15  Score=112.53  Aligned_cols=108  Identities=21%  Similarity=0.379  Sum_probs=54.1

Q ss_pred             hhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCC
Q 048040           49 LLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSL  128 (178)
Q Consensus        49 l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  128 (178)
                      +..+++|+.|++++|.++.  ++. +..+++|++|++++|.+..++. +..+++|+.|++++|++.....   +..+++|
T Consensus       103 ~~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L  175 (308)
T 1h6u_A          103 IAGLQSIKTLDLTSTQITD--VTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP---LANLSKL  175 (308)
T ss_dssp             GTTCTTCCEEECTTSCCCC--CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG---GTTCTTC
T ss_pred             hcCCCCCCEEECCCCCCCC--chh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh---hcCCCCC
Confidence            4444444444444444444  221 4445555555555554433332 4445555555555555433221   4555555


Q ss_pred             CEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCC
Q 048040          129 RHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPI  167 (178)
Q Consensus       129 ~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~  167 (178)
                      ++|++++|.+++.+.    +..+++|++|++++|++.+.
T Consensus       176 ~~L~l~~n~l~~~~~----l~~l~~L~~L~L~~N~l~~~  210 (308)
T 1h6u_A          176 TTLKADDNKISDISP----LASLPNLIEVHLKNNQISDV  210 (308)
T ss_dssp             CEEECCSSCCCCCGG----GGGCTTCCEEECTTSCCCBC
T ss_pred             CEEECCCCccCcChh----hcCCCCCCEEEccCCccCcc
Confidence            566666555555441    45556666666666666543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.65  E-value=4e-16  Score=125.80  Aligned_cols=145  Identities=21%  Similarity=0.192  Sum_probs=123.7

Q ss_pred             CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch-hcc
Q 048040           20 TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLR   98 (178)
Q Consensus        20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~   98 (178)
                      ...+++|++++|        .+.+..+..|..+++|++|++++|.++.. .+..|..+++|++|++++|.+..++. .+.
T Consensus        51 l~~L~~L~Ls~n--------~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~  121 (570)
T 2z63_A           51 FPELQVLDLSRC--------EIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIG  121 (570)
T ss_dssp             CSSCCEEECTTC--------CCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTSCCCCSTTCSCT
T ss_pred             CCCceEEECCCC--------cCCccCcccccCchhCCEEeCcCCcCCcc-CHhhhcCccccccccccccccccCCCcccc
Confidence            367999999999        77776677899999999999999999985 56789999999999999998777765 688


Q ss_pred             CCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCC----cEEEecCCCCCCCCCccccc
Q 048040           99 NFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSL----KTFVLRSCALPPINPSFICG  174 (178)
Q Consensus        99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L----~~l~l~~n~~~~~~~~~~~~  174 (178)
                      .+++|++|++++|.+.....+..++.+++|++|++++|.++..+  +..++.+++|    +.+++++|.+.+..|..+..
T Consensus       122 ~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~  199 (570)
T 2z63_A          122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY--CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE  199 (570)
T ss_dssp             TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC--GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT
T ss_pred             ccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec--HHHccchhccchhhhhcccCCCCceecCHHHhcc
Confidence            99999999999999876555677899999999999999998874  2356666666    89999999999888877765


Q ss_pred             c
Q 048040          175 W  175 (178)
Q Consensus       175 l  175 (178)
                      +
T Consensus       200 ~  200 (570)
T 2z63_A          200 I  200 (570)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.65  E-value=2.9e-16  Score=118.21  Aligned_cols=144  Identities=15%  Similarity=0.118  Sum_probs=93.1

Q ss_pred             eeEEEecCCcccccccccccccchhhh--hCCCCCCEEEccCCCCCCCCch----hhhcccCCCcEEeccCCCCCccc-h
Q 048040           23 VKVLNLRTSDYEFARRKFLKGTISPAL--LKLHDLRHLDLSNNDFGGSPIP----EFIGSLSKLRYLNLSCGAPLEVP-R   95 (178)
Q Consensus        23 l~~l~l~~~~~~~~~~~~l~~~~~~~l--~~l~~L~~L~l~~n~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~-~   95 (178)
                      +++|++++|        .+.+..|..+  ..+.+|++|++++|.++.. .+    ..+..+++|++|++++|.+..++ .
T Consensus        93 L~~L~l~~n--------~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~-~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~  163 (310)
T 4glp_A           93 LKELTLEDL--------KITGTMPPLPLEATGLALSSLRLRNVSWATG-RSWLAELQQWLKPGLKVLSIAQAHSPAFSCE  163 (310)
T ss_dssp             CCEEEEESC--------CCBSCCCCCSSSCCCBCCSSCEEESCCCSST-TSSHHHHHTTBCSCCCEEEEECCSSCCCCTT
T ss_pred             eeEEEeeCC--------EeccchhhhhhhccCCCCCEEEeecccccch-hhhhHHHHhhhccCCCEEEeeCCCcchhhHH
Confidence            555555555        6777777666  7777888888888887753 22    33446777888888877555543 4


Q ss_pred             hccCCCCCcEEEeeCCccccCC---chHHHhccCCCCEEeccCCCCCCcccHHH-HHhccCCCcEEEecCCCCCCCCCcc
Q 048040           96 TLRNFSGLEYLNLENSHLFSVG---SLEWLSHLSSLRHLDLSYINLTKSRDWFQ-VVAKLRSLKTFVLRSCALPPINPSF  171 (178)
Q Consensus        96 ~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~n~i~~~~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~  171 (178)
                      .+..+++|++|++++|++.+..   .....+.+++|++|++++|.++..+.... .+..+++|++|++++|.+.+..|+.
T Consensus       164 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~  243 (310)
T 4glp_A          164 QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS  243 (310)
T ss_dssp             SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC
T ss_pred             HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh
Confidence            6777788888888888753311   11113566777777777777766543222 2466777777777777777766655


Q ss_pred             cccc
Q 048040          172 ICGW  175 (178)
Q Consensus       172 ~~~l  175 (178)
                      +..+
T Consensus       244 ~~~~  247 (310)
T 4glp_A          244 APRC  247 (310)
T ss_dssp             CSSC
T ss_pred             HHhc
Confidence            5443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.65  E-value=4.4e-15  Score=111.78  Aligned_cols=125  Identities=21%  Similarity=0.335  Sum_probs=61.6

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNF  100 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l  100 (178)
                      ..++.|++++|        .+.+..+  +..+++|+.|++++|.++.  ++ .+..+++|++|++++|.+..++. +..+
T Consensus        63 ~~L~~L~L~~n--------~i~~~~~--~~~l~~L~~L~L~~n~l~~--~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l  128 (308)
T 1h6u_A           63 NNLIGLELKDN--------QITDLAP--LKNLTKITELELSGNPLKN--VS-AIAGLQSIKTLDLTSTQITDVTP-LAGL  128 (308)
T ss_dssp             TTCCEEECCSS--------CCCCCGG--GTTCCSCCEEECCSCCCSC--CG-GGTTCTTCCEEECTTSCCCCCGG-GTTC
T ss_pred             CCCCEEEccCC--------cCCCChh--HccCCCCCEEEccCCcCCC--ch-hhcCCCCCCEEECCCCCCCCchh-hcCC
Confidence            44555555555        3332222  4455555555555555544  22 34455555555555554444332 4455


Q ss_pred             CCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCC
Q 048040          101 SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPP  166 (178)
Q Consensus       101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~  166 (178)
                      ++|+.|++++|.+.....   +..+++|++|++++|.+++.+.    +..+++|+.|++++|.+.+
T Consensus       129 ~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n~l~~  187 (308)
T 1h6u_A          129 SNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDLTP----LANLSKLTTLKADDNKISD  187 (308)
T ss_dssp             TTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCC
T ss_pred             CCCCEEECCCCccCcCcc---ccCCCCccEEEccCCcCCCChh----hcCCCCCCEEECCCCccCc
Confidence            555555555555433321   4455555555555555554431    4455555555555555554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.65  E-value=1.2e-15  Score=107.73  Aligned_cols=129  Identities=15%  Similarity=0.224  Sum_probs=107.1

Q ss_pred             CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCc-cchhcc
Q 048040           20 TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLE-VPRTLR   98 (178)
Q Consensus        20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~   98 (178)
                      ...++.|++++|        .+..  ++.+..+++|++|++++|.+++. .+..+..+++|++|++++|.+.. .+..+.
T Consensus        65 l~~L~~L~l~~n--------~~~~--~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~  133 (197)
T 4ezg_A           65 AHNIKDLTINNI--------HATN--YNPISGLSNLERLRIMGKDVTSD-KIPNLSGLTSLTLLDISHSAHDDSILTKIN  133 (197)
T ss_dssp             CTTCSEEEEESC--------CCSC--CGGGTTCTTCCEEEEECTTCBGG-GSCCCTTCTTCCEEECCSSBCBGGGHHHHT
T ss_pred             CCCCCEEEccCC--------CCCc--chhhhcCCCCCEEEeECCccCcc-cChhhcCCCCCCEEEecCCccCcHhHHHHh
Confidence            367999999999        4432  23678899999999999999875 67788999999999999996654 577899


Q ss_pred             CCCCCcEEEeeCCc-cccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCC
Q 048040           99 NFSGLEYLNLENSH-LFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPP  166 (178)
Q Consensus        99 ~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~  166 (178)
                      .+++|+.|++++|+ +...+   .+..+++|++|++++|.+++.+    .+..+++|++|++++|++.+
T Consensus       134 ~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~~~----~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          134 TLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHDYR----GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             TCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCCCT----TGGGCSSCCEEEECBC----
T ss_pred             hCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCcChH----HhccCCCCCEEEeeCcccCC
Confidence            99999999999998 65443   4889999999999999999875    67889999999999999764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.65  E-value=5.2e-16  Score=109.24  Aligned_cols=91  Identities=24%  Similarity=0.293  Sum_probs=43.4

Q ss_pred             hhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch-hccCCCCCcEEEeeCCccccCCchHHHhccCC
Q 048040           49 LLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSS  127 (178)
Q Consensus        49 l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  127 (178)
                      +..+++|+.|++++|.+++. .|..+..+++|++|++++|.+..++. .+..+++|+.|++++|++.+.. +..+..+++
T Consensus        50 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~  127 (192)
T 1w8a_A           50 FGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM-PGSFEHLNS  127 (192)
T ss_dssp             GGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEEC-TTSSTTCTT
T ss_pred             cccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeC-HHHhhcCCC
Confidence            44455555555555555543 34445555555555555554443322 3444555555555555543321 122444455


Q ss_pred             CCEEeccCCCCCCc
Q 048040          128 LRHLDLSYINLTKS  141 (178)
Q Consensus       128 L~~L~l~~n~i~~~  141 (178)
                      |++|++++|.+...
T Consensus       128 L~~L~L~~N~l~c~  141 (192)
T 1w8a_A          128 LTSLNLASNPFNCN  141 (192)
T ss_dssp             CCEEECTTCCBCCS
T ss_pred             CCEEEeCCCCccCc
Confidence            55555555555443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.65  E-value=8.3e-16  Score=125.21  Aligned_cols=140  Identities=19%  Similarity=0.200  Sum_probs=95.3

Q ss_pred             CeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch-hccCC
Q 048040           22 HVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRNF  100 (178)
Q Consensus        22 ~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l  100 (178)
                      .++.++++++        .+....+..+..+++|+.|++++|.+++. .+..+..+++|++|++++|.+..++. .+..+
T Consensus        52 ~l~~l~l~~~--------~l~~lp~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  122 (597)
T 3oja_B           52 NQKIVTFKNS--------TMRKLPAALLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV  122 (597)
T ss_dssp             CCSEEEESSC--------EESEECTHHHHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CceEEEeeCC--------CCCCcCHHHHccCCCCcEEECCCCCCCCC-ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence            3466666666        56655555667777888888888877764 45577777788888887776555543 56777


Q ss_pred             CCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCcccc
Q 048040          101 SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFIC  173 (178)
Q Consensus       101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~  173 (178)
                      ++|+.|++++|.+...+. ..++.+++|++|++++|.+++.+  +..+..+++|++|++++|.+.+..+..+.
T Consensus       123 ~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~l~  192 (597)
T 3oja_B          123 PLLTVLVLERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIE--DDTFQATTSLQNLQLSSNRLTHVDLSLIP  192 (597)
T ss_dssp             TTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCC--TTTTTTCTTCCEEECTTSCCSBCCGGGCT
T ss_pred             CCCCEEEeeCCCCCCCCH-HHhccCCCCCEEEeeCCcCCCCC--hhhhhcCCcCcEEECcCCCCCCcChhhhh
Confidence            778888888877754432 33567777888888888777764  23567777788888877777765444433

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.64  E-value=5.2e-15  Score=110.53  Aligned_cols=125  Identities=25%  Similarity=0.295  Sum_probs=76.4

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNF  100 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l  100 (178)
                      ..++.|++++|        .+.+..+  +..+++|+.|++++|.++.  ++ .+..+++|++|++++|.+..+ ..+..+
T Consensus        68 ~~L~~L~L~~n--------~l~~~~~--l~~l~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~L~~n~i~~~-~~l~~l  133 (291)
T 1h6t_A           68 PNVTKLFLNGN--------KLTDIKP--LANLKNLGWLFLDENKVKD--LS-SLKDLKKLKSLSLEHNGISDI-NGLVHL  133 (291)
T ss_dssp             TTCCEEECCSS--------CCCCCGG--GTTCTTCCEEECCSSCCCC--GG-GGTTCTTCCEEECTTSCCCCC-GGGGGC
T ss_pred             CCCCEEEccCC--------ccCCCcc--cccCCCCCEEECCCCcCCC--Ch-hhccCCCCCEEECCCCcCCCC-hhhcCC
Confidence            45666666666        4444332  6666677777777776665  33 256666677777766655544 345566


Q ss_pred             CCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCC
Q 048040          101 SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPP  166 (178)
Q Consensus       101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~  166 (178)
                      ++|+.|++++|++...   ..+..+++|++|++++|.+++.+.    +..+++|++|++++|.+++
T Consensus       134 ~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N~l~~~~~----l~~l~~L~~L~L~~N~i~~  192 (291)
T 1h6t_A          134 PQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNHISD  192 (291)
T ss_dssp             TTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCB
T ss_pred             CCCCEEEccCCcCCcc---hhhccCCCCCEEEccCCccccchh----hcCCCccCEEECCCCcCCC
Confidence            6666666666666443   235666666666666666666541    5566666666666666664

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.64  E-value=5.9e-15  Score=110.25  Aligned_cols=128  Identities=23%  Similarity=0.334  Sum_probs=109.4

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNF  100 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l  100 (178)
                      ..++.|++++|        .+... + .+..+++|+.|++++|.+++.  +. +..+++|++|++++|.+..++ .+..+
T Consensus        46 ~~L~~L~l~~~--------~i~~~-~-~~~~l~~L~~L~L~~n~l~~~--~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l  111 (291)
T 1h6t_A           46 NSIDQIIANNS--------DIKSV-Q-GIQYLPNVTKLFLNGNKLTDI--KP-LANLKNLGWLFLDENKVKDLS-SLKDL  111 (291)
T ss_dssp             HTCCEEECTTS--------CCCCC-T-TGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCGG-GGTTC
T ss_pred             CcccEEEccCC--------CcccC-h-hHhcCCCCCEEEccCCccCCC--cc-cccCCCCCEEECCCCcCCCCh-hhccC
Confidence            56899999999        45433 2 378899999999999999984  44 899999999999999777665 48899


Q ss_pred             CCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCC
Q 048040          101 SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINP  169 (178)
Q Consensus       101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  169 (178)
                      ++|+.|++++|++...   ..+..+++|++|++++|.+++.+    .+..+++|++|++++|.+.+..|
T Consensus       112 ~~L~~L~L~~n~i~~~---~~l~~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~L~~N~l~~~~~  173 (291)
T 1h6t_A          112 KKLKSLSLEHNGISDI---NGLVHLPQLESLYLGNNKITDIT----VLSRLTKLDTLSLEDNQISDIVP  173 (291)
T ss_dssp             TTCCEEECTTSCCCCC---GGGGGCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCCCCGG
T ss_pred             CCCCEEECCCCcCCCC---hhhcCCCCCCEEEccCCcCCcch----hhccCCCCCEEEccCCccccchh
Confidence            9999999999998665   34788999999999999999874    67899999999999999997654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.64  E-value=5.5e-15  Score=108.89  Aligned_cols=125  Identities=21%  Similarity=0.278  Sum_probs=71.0

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNF  100 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l  100 (178)
                      ..++.|++++|.        +.. ++ .+..+++|+.|++++|.+++  ++. +..+++|++|++++|.+..+|... . 
T Consensus        41 ~~L~~L~l~~n~--------i~~-l~-~l~~l~~L~~L~L~~N~i~~--~~~-l~~l~~L~~L~L~~N~l~~l~~~~-~-  105 (263)
T 1xeu_A           41 SGVQNFNGDNSN--------IQS-LA-GMQFFTNLKELHLSHNQISD--LSP-LKDLTKLEELSVNRNRLKNLNGIP-S-  105 (263)
T ss_dssp             TTCSEEECTTSC--------CCC-CT-TGGGCTTCCEEECCSSCCCC--CGG-GTTCSSCCEEECCSSCCSCCTTCC-C-
T ss_pred             CcCcEEECcCCC--------ccc-ch-HHhhCCCCCEEECCCCccCC--Chh-hccCCCCCEEECCCCccCCcCccc-c-
Confidence            567777777773        332 22 35566666666666666665  333 666666666666666555444322 2 


Q ss_pred             CCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCC
Q 048040          101 SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPI  167 (178)
Q Consensus       101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~  167 (178)
                      ++|+.|++++|++.+.+   .+..+++|++|++++|.+++.+    .+..+++|++|++++|++.+.
T Consensus       106 ~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~Ls~N~i~~~~----~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A          106 ACLSRLFLDNNELRDTD---SLIHLKNLEILSIRNNKLKSIV----MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             SSCCEEECCSSCCSBSG---GGTTCTTCCEEECTTSCCCBCG----GGGGCTTCCEEECTTSCCCBC
T ss_pred             CcccEEEccCCccCCCh---hhcCcccccEEECCCCcCCCCh----HHccCCCCCEEECCCCcCcch
Confidence            55666666666654432   2555566666666666665543    345555666666666655543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.63  E-value=1.7e-15  Score=106.79  Aligned_cols=107  Identities=21%  Similarity=0.277  Sum_probs=56.1

Q ss_pred             CCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccc-hhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEe
Q 048040           54 DLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVP-RTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLD  132 (178)
Q Consensus        54 ~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  132 (178)
                      +|+.|++++|.++.  +|..+..+++|+.|++++|.+..++ ..+..+++|+.|++++|++.... +..+..+++|++|+
T Consensus        32 ~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L~  108 (193)
T 2wfh_A           32 DVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP-PRTFDGLKSLRLLS  108 (193)
T ss_dssp             TCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEEE
T ss_pred             CCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeC-HHHhCCCCCCCEEE
Confidence            45555555555554  4455555555555555555444443 24555555555555555554333 12245555555555


Q ss_pred             ccCCCCCCcccHHHHHhccCCCcEEEecCCCCC
Q 048040          133 LSYINLTKSRDWFQVVAKLRSLKTFVLRSCALP  165 (178)
Q Consensus       133 l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~  165 (178)
                      +++|.++..+.  ..+..+++|+.|++++|++.
T Consensus       109 L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          109 LHGNDISVVPE--GAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCSSCCCBCCT--TTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCCCeeCh--hhhhcCccccEEEeCCCCee
Confidence            55555555431  23445555555555555543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.63  E-value=3.1e-15  Score=115.76  Aligned_cols=94  Identities=20%  Similarity=0.215  Sum_probs=56.8

Q ss_pred             CCeeEEEecCCccc----------------ccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEe
Q 048040           21 GHVKVLNLRTSDYE----------------FARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLN   84 (178)
Q Consensus        21 ~~l~~l~l~~~~~~----------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~   84 (178)
                      ..++.|++++|.+.                .+++|.+.+..|..+..+++|++|++++|.++.. .+..+..+++|++|+
T Consensus        69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~  147 (390)
T 3o6n_A           69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLS  147 (390)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEE
T ss_pred             ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcC-CHHHhcCCCCCcEEE
Confidence            56788888887542                2233455555555566666666666666666652 223346666667777


Q ss_pred             ccCCCCCcc-chhccCCCCCcEEEeeCCcccc
Q 048040           85 LSCGAPLEV-PRTLRNFSGLEYLNLENSHLFS  115 (178)
Q Consensus        85 l~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~  115 (178)
                      +++|.+..+ +..+..+++|+.|++++|++..
T Consensus       148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  179 (390)
T 3o6n_A          148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  179 (390)
T ss_dssp             CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred             CCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence            666654444 3346666677777777666543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.63  E-value=2e-15  Score=122.96  Aligned_cols=94  Identities=20%  Similarity=0.215  Sum_probs=53.4

Q ss_pred             CCeeEEEecCCccc----------------ccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEe
Q 048040           21 GHVKVLNLRTSDYE----------------FARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLN   84 (178)
Q Consensus        21 ~~l~~l~l~~~~~~----------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~   84 (178)
                      ..++.|++++|.+.                .+++|.+.+..|..|..+++|++|++++|.++.. .+..|..+++|++|+
T Consensus        75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~  153 (597)
T 3oja_B           75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLS  153 (597)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEE
T ss_pred             CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCC-CHHHhccCCCCCEEE
Confidence            56888999888552                3344455554455555566666666666666552 233345566666666


Q ss_pred             ccCCCCCcc-chhccCCCCCcEEEeeCCcccc
Q 048040           85 LSCGAPLEV-PRTLRNFSGLEYLNLENSHLFS  115 (178)
Q Consensus        85 l~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~  115 (178)
                      +++|.+..+ |..+..+++|+.|++++|.+.+
T Consensus       154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  185 (597)
T 3oja_B          154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  185 (597)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred             eeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence            666644433 3345556666666666665533

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.63  E-value=2.5e-16  Score=120.49  Aligned_cols=140  Identities=22%  Similarity=0.203  Sum_probs=74.4

Q ss_pred             CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch--hc
Q 048040           20 TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR--TL   97 (178)
Q Consensus        20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~   97 (178)
                      ...++.|++++|        .+.+..+..+..+++|++|++++|.++.. .+..+..+++|++|++++|.+..+|.  .+
T Consensus        75 l~~L~~L~L~~n--------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~  145 (353)
T 2z80_A           75 CVNLQALVLTSN--------GINTIEEDSFSSLGSLEHLDLSYNYLSNL-SSSWFKPLSSLTFLNLLGNPYKTLGETSLF  145 (353)
T ss_dssp             CTTCCEEECTTS--------CCCEECTTTTTTCTTCCEEECCSSCCSSC-CHHHHTTCTTCSEEECTTCCCSSSCSSCSC
T ss_pred             CCCCCEEECCCC--------ccCccCHhhcCCCCCCCEEECCCCcCCcC-CHhHhCCCccCCEEECCCCCCcccCchhhh
Confidence            366788888888        44444444455555555555555555542 22334555555555555554444433  34


Q ss_pred             cCCCCCcEEEeeCC-------------------------ccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccC
Q 048040           98 RNFSGLEYLNLENS-------------------------HLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLR  152 (178)
Q Consensus        98 ~~l~~L~~L~l~~n-------------------------~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~  152 (178)
                      ..+++|+.|++++|                         ++.+.. +..++.+++|++|++++|.++..+  ...+..++
T Consensus       146 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~~  222 (353)
T 2z80_A          146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE-PKSLKSIQNVSHLILHMKQHILLL--EIFVDVTS  222 (353)
T ss_dssp             TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC-TTTTTTCSEEEEEEEECSCSTTHH--HHHHHHTT
T ss_pred             ccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC-HHHHhccccCCeecCCCCccccch--hhhhhhcc
Confidence            44555555555544                         432221 223455555666666666655444  23344567


Q ss_pred             CCcEEEecCCCCCCCCCcc
Q 048040          153 SLKTFVLRSCALPPINPSF  171 (178)
Q Consensus       153 ~L~~l~l~~n~~~~~~~~~  171 (178)
                      +|+.|++++|.+.+..+..
T Consensus       223 ~L~~L~L~~n~l~~~~~~~  241 (353)
T 2z80_A          223 SVECLELRDTDLDTFHFSE  241 (353)
T ss_dssp             TEEEEEEESCBCTTCCCC-
T ss_pred             cccEEECCCCccccccccc
Confidence            7777777777777655443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.63  E-value=3.3e-15  Score=123.04  Aligned_cols=135  Identities=19%  Similarity=0.230  Sum_probs=114.3

Q ss_pred             ccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch-hccCCCCCcEEEeeCCcc
Q 048040           35 FARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENSHL  113 (178)
Q Consensus        35 ~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~n~l  113 (178)
                      .++.|.+.+..+..+..+++|++|++++|.++.. .|..+..+++|++|++++|.+..+|. .+..+++|++|++++|++
T Consensus        31 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l  109 (680)
T 1ziw_A           31 NLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI  109 (680)
T ss_dssp             ECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC
T ss_pred             ECCCCCCCCcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCcc
Confidence            6678888887777899999999999999999986 78889999999999999998777776 688999999999999998


Q ss_pred             ccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCcccc
Q 048040          114 FSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFIC  173 (178)
Q Consensus       114 ~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~  173 (178)
                      ...+ +..++.+++|++|++++|.+++.+  +..+.++++|++|++++|.+++..+..+.
T Consensus       110 ~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  166 (680)
T 1ziw_A          110 QKIK-NNPFVKQKNLITLDLSHNGLSSTK--LGTQVQLENLQELLLSNNKIQALKSEELD  166 (680)
T ss_dssp             CCCC-SCTTTTCTTCCEEECCSSCCSCCC--CCSSSCCTTCCEEECCSSCCCCBCHHHHG
T ss_pred             CccC-hhHccccCCCCEEECCCCcccccC--chhhcccccCCEEEccCCcccccCHHHhh
Confidence            6554 234788999999999999998874  23667899999999999999987776543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.63  E-value=4.3e-16  Score=127.77  Aligned_cols=138  Identities=13%  Similarity=0.182  Sum_probs=96.8

Q ss_pred             CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCC-CCC-CCchhhhccc------CCCcEEeccCCCCC
Q 048040           20 TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNND-FGG-SPIPEFIGSL------SKLRYLNLSCGAPL   91 (178)
Q Consensus        20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~~l~~l------~~L~~L~l~~~~~~   91 (178)
                      ...++.|++++|        .+.+.+|..+..+++|++|++++|. +++ . +|..+..+      ++|++|++++|.+.
T Consensus       248 l~~L~~L~L~~n--------~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~-lp~~~~~L~~~~~l~~L~~L~L~~n~l~  318 (636)
T 4eco_A          248 LKDLTDVEVYNC--------PNLTKLPTFLKALPEMQLINVACNRGISGEQ-LKDDWQALADAPVGEKIQIIYIGYNNLK  318 (636)
T ss_dssp             CTTCCEEEEECC--------TTCSSCCTTTTTCSSCCEEECTTCTTSCHHH-HHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred             cCCCCEEEecCC--------cCCccChHHHhcCCCCCEEECcCCCCCcccc-chHHHHhhhccccCCCCCEEECCCCcCC
Confidence            357889999998        7777888888888888888888887 775 4 67777665      78888888888666


Q ss_pred             ccch--hccCCCCCcEEEeeCCccc-cCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCC-CcEEEecCCCCCCC
Q 048040           92 EVPR--TLRNFSGLEYLNLENSHLF-SVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRS-LKTFVLRSCALPPI  167 (178)
Q Consensus        92 ~~~~--~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~-L~~l~l~~n~~~~~  167 (178)
                      .+|.  .+..+++|+.|++++|++. ..+   .++.+++|++|++++|.++..+.   .+..+++ |++|++++|.+. .
T Consensus       319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip---~~~~l~~L~~L~L~~N~l~~lp~---~l~~l~~~L~~L~Ls~N~l~-~  391 (636)
T 4eco_A          319 TFPVETSLQKMKKLGMLECLYNQLEGKLP---AFGSEIKLASLNLAYNQITEIPA---NFCGFTEQVENLSFAHNKLK-Y  391 (636)
T ss_dssp             SCCCHHHHTTCTTCCEEECCSCCCEEECC---CCEEEEEESEEECCSSEEEECCT---TSEEECTTCCEEECCSSCCS-S
T ss_pred             ccCchhhhccCCCCCEEeCcCCcCccchh---hhCCCCCCCEEECCCCccccccH---hhhhhcccCcEEEccCCcCc-c
Confidence            7777  7778888888888888775 332   35666666666666666664443   4556665 666666666665 4


Q ss_pred             CCcccc
Q 048040          168 NPSFIC  173 (178)
Q Consensus       168 ~~~~~~  173 (178)
                      +|..+.
T Consensus       392 lp~~~~  397 (636)
T 4eco_A          392 IPNIFD  397 (636)
T ss_dssp             CCSCCC
T ss_pred             cchhhh
Confidence            444443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.63  E-value=1.8e-15  Score=106.51  Aligned_cols=131  Identities=19%  Similarity=0.219  Sum_probs=106.9

Q ss_pred             eEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchh-hhcccCCCcEEeccCCCCCcc-chhccCCC
Q 048040           24 KVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPE-FIGSLSKLRYLNLSCGAPLEV-PRTLRNFS  101 (178)
Q Consensus        24 ~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~  101 (178)
                      +.++++++        .+. .+|..+.  .+++.|++++|.++.. .+. .+..+++|++|++++|.+..+ |..+..++
T Consensus        11 ~~l~~s~~--------~l~-~ip~~~~--~~l~~L~l~~n~i~~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~   78 (192)
T 1w8a_A           11 TTVDCTGR--------GLK-EIPRDIP--LHTTELLLNDNELGRI-SSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS   78 (192)
T ss_dssp             TEEECTTS--------CCS-SCCSCCC--TTCSEEECCSCCCCSB-CCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT
T ss_pred             CEEEcCCC--------CcC-cCccCCC--CCCCEEECCCCcCCcc-CCccccccCCCCCEEECCCCCCCCcCHhHcCCcc
Confidence            67888888        453 4454332  3899999999999884 332 489999999999999977666 67899999


Q ss_pred             CCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCC
Q 048040          102 GLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINP  169 (178)
Q Consensus       102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  169 (178)
                      +|+.|++++|++.+... ..+..+++|++|++++|.+++.+  +..+..+++|++|++++|++.+.++
T Consensus        79 ~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           79 HIQELQLGENKIKEISN-KMFLGLHQLKTLNLYDNQISCVM--PGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             TCCEEECCSCCCCEECS-SSSTTCTTCCEEECCSSCCCEEC--TTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             cCCEEECCCCcCCccCH-HHhcCCCCCCEEECCCCcCCeeC--HHHhhcCCCCCEEEeCCCCccCcCc
Confidence            99999999999866543 34788999999999999999884  3478899999999999999987654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.63  E-value=9.2e-16  Score=129.43  Aligned_cols=140  Identities=14%  Similarity=0.183  Sum_probs=110.4

Q ss_pred             CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCC-CCC-CCchhhhcccC-------CCcEEeccCCCC
Q 048040           20 TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNND-FGG-SPIPEFIGSLS-------KLRYLNLSCGAP   90 (178)
Q Consensus        20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~~l~~l~-------~L~~L~l~~~~~   90 (178)
                      ...++.|++++|        .+.+.+|..+..+++|+.|++++|. +++ . +|..+..+.       +|+.|++++|.+
T Consensus       490 L~~L~~L~Ls~N--------~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~-iP~~i~~L~~~~~~l~~L~~L~Ls~N~L  560 (876)
T 4ecn_A          490 LKDLTDVELYNC--------PNMTQLPDFLYDLPELQSLNIACNRGISAAQ-LKADWTRLADDEDTGPKIQIFYMGYNNL  560 (876)
T ss_dssp             CTTCCEEEEESC--------TTCCSCCGGGGGCSSCCEEECTTCTTSCHHH-HHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred             CCCCCEEECcCC--------CCCccChHHHhCCCCCCEEECcCCCCccccc-chHHHHhhhhcccccCCccEEEeeCCcC
Confidence            357899999999        7788888888888999999999987 775 4 777776665       888888888876


Q ss_pred             Cccch--hccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCC-CcEEEecCCCCCCC
Q 048040           91 LEVPR--TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRS-LKTFVLRSCALPPI  167 (178)
Q Consensus        91 ~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~-L~~l~l~~n~~~~~  167 (178)
                      ..+|.  .+..+++|+.|++++|++...+   .++.+++|++|++++|.++..+.   .+..+++ |+.|++++|.+. .
T Consensus       561 ~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp---~~~~L~~L~~L~Ls~N~l~~lp~---~l~~l~~~L~~L~Ls~N~L~-~  633 (876)
T 4ecn_A          561 EEFPASASLQKMVKLGLLDCVHNKVRHLE---AFGTNVKLTDLKLDYNQIEEIPE---DFCAFTDQVEGLGFSHNKLK-Y  633 (876)
T ss_dssp             CBCCCHHHHTTCTTCCEEECTTSCCCBCC---CCCTTSEESEEECCSSCCSCCCT---TSCEECTTCCEEECCSSCCC-S
T ss_pred             CccCChhhhhcCCCCCEEECCCCCcccch---hhcCCCcceEEECcCCccccchH---HHhhccccCCEEECcCCCCC-c
Confidence            67887  7888888888888888876443   47788888888888888886553   5777777 888888888877 5


Q ss_pred             CCcccccc
Q 048040          168 NPSFICGW  175 (178)
Q Consensus       168 ~~~~~~~l  175 (178)
                      +|..+..+
T Consensus       634 lp~~~~~~  641 (876)
T 4ecn_A          634 IPNIFNAK  641 (876)
T ss_dssp             CCSCCCTT
T ss_pred             Cchhhhcc
Confidence            66655543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.63  E-value=1.4e-14  Score=110.26  Aligned_cols=139  Identities=21%  Similarity=0.338  Sum_probs=108.7

Q ss_pred             CCCeeEEEecCCcccc--------------cccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEec
Q 048040           20 TGHVKVLNLRTSDYEF--------------ARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNL   85 (178)
Q Consensus        20 ~~~l~~l~l~~~~~~~--------------~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l   85 (178)
                      ...++.|++++|.+..              +..|.+.+..+  +..+++|+.|++++|.++..  +. +..+++|++|++
T Consensus       176 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~l  250 (347)
T 4fmz_A          176 LTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL--SP-LANLSQLTWLEI  250 (347)
T ss_dssp             CTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEEC
T ss_pred             CCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCC--cc-hhcCCCCCEEEC
Confidence            3567777887776532              22334443333  77888999999999999873  44 788899999999


Q ss_pred             cCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCC
Q 048040           86 SCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALP  165 (178)
Q Consensus        86 ~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~  165 (178)
                      ++|.+..+ ..+..+++|+.|++++|++...   ..+..+++|++|++++|.+++.+  +..+..+++|++|++++|+++
T Consensus       251 ~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~L~~n~l~  324 (347)
T 4fmz_A          251 GTNQISDI-NAVKDLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGNED--MEVIGGLTNLTTLFLSQNHIT  324 (347)
T ss_dssp             CSSCCCCC-GGGTTCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCGGG--HHHHHTCTTCSEEECCSSSCC
T ss_pred             CCCccCCC-hhHhcCCCcCEEEccCCccCCC---hhhcCCCCCCEEECcCCcCCCcC--hhHhhccccCCEEEccCCccc
Confidence            99876665 4677889999999999998665   33788899999999999998775  467889999999999999999


Q ss_pred             CCCC
Q 048040          166 PINP  169 (178)
Q Consensus       166 ~~~~  169 (178)
                      +..|
T Consensus       325 ~~~~  328 (347)
T 4fmz_A          325 DIRP  328 (347)
T ss_dssp             CCGG
T ss_pred             cccC
Confidence            8766

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.62  E-value=1.6e-15  Score=123.35  Aligned_cols=145  Identities=21%  Similarity=0.196  Sum_probs=118.7

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch-hccC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRN   99 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~   99 (178)
                      ..++.|+|++|        .+.+..+.+|.++++|++|+|++|.++.. .+..|..+++|++|++++|.+..++. .++.
T Consensus        76 ~~L~~L~Ls~N--------~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~  146 (635)
T 4g8a_A           76 PELQVLDLSRC--------EIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGH  146 (635)
T ss_dssp             TTCCEEECTTC--------CCCEECTTTTTTCTTCCEEECTTCCCCEE-CGGGGTTCTTCCEEECTTSCCCCSTTCCCTT
T ss_pred             CCCCEEECCCC--------cCCCcChhHhcCCCCCCEEEccCCcCCCC-CHHHhcCCCCCCEEECCCCcCCCCChhhhhc
Confidence            67899999999        77776677899999999999999999984 45678999999999999998877765 6899


Q ss_pred             CCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcc-cHHHHHhccC-CCcEEEecCCCCCCCCCccccc
Q 048040          100 FSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSR-DWFQVVAKLR-SLKTFVLRSCALPPINPSFICG  174 (178)
Q Consensus       100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~~~~~~l~-~L~~l~l~~n~~~~~~~~~~~~  174 (178)
                      +++|+.|++++|.+.....+..++.+++|++|++++|.+++.+ .....+.+++ ....++++.|.+....+..+..
T Consensus       147 L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~  223 (635)
T 4g8a_A          147 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE  223 (635)
T ss_dssp             CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT
T ss_pred             CcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccc
Confidence            9999999999999877766677899999999999999998874 2123333443 3457889999988766665544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.62  E-value=3.8e-15  Score=120.36  Aligned_cols=142  Identities=18%  Similarity=0.177  Sum_probs=110.9

Q ss_pred             CCCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCC-chhhhcccCCCcEEeccCCCCCc-cch-
Q 048040           19 TTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSP-IPEFIGSLSKLRYLNLSCGAPLE-VPR-   95 (178)
Q Consensus        19 ~~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~-~~~-   95 (178)
                      ....++.|++++|        .+.+..|..+..+++|+.|++++|.++..+ .|..+..+++|++|++++|.+.. +|. 
T Consensus       351 ~l~~L~~L~l~~n--------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  422 (562)
T 3a79_B          351 SPSSFTFLNFTQN--------VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR  422 (562)
T ss_dssp             SCCCCCEEECCSS--------CCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC
T ss_pred             CCCCceEEECCCC--------ccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChh
Confidence            3467888888888        788888888999999999999999998731 35668899999999999996665 665 


Q ss_pred             hccCCCCCcEEEeeCCccccCCchHHHhcc-CCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCccccc
Q 048040           96 TLRNFSGLEYLNLENSHLFSVGSLEWLSHL-SSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICG  174 (178)
Q Consensus        96 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~  174 (178)
                      .+..+++|+.|++++|++.+..    ...+ ++|++|++++|.++..+.   .+..+++|++|++++|++++.++..+..
T Consensus       423 ~~~~l~~L~~L~l~~n~l~~~~----~~~l~~~L~~L~L~~N~l~~ip~---~~~~l~~L~~L~L~~N~l~~l~~~~~~~  495 (562)
T 3a79_B          423 TCAWAESILVLNLSSNMLTGSV----FRCLPPKVKVLDLHNNRIMSIPK---DVTHLQALQELNVASNQLKSVPDGVFDR  495 (562)
T ss_dssp             CCCCCTTCCEEECCSSCCCGGG----GSSCCTTCSEEECCSSCCCCCCT---TTTSSCCCSEEECCSSCCCCCCTTSTTT
T ss_pred             hhcCcccCCEEECCCCCCCcch----hhhhcCcCCEEECCCCcCcccCh---hhcCCCCCCEEECCCCCCCCCCHHHHhc
Confidence            4778889999999999875432    2334 589999999999887764   4558889999999999988655443554


Q ss_pred             c
Q 048040          175 W  175 (178)
Q Consensus       175 l  175 (178)
                      +
T Consensus       496 l  496 (562)
T 3a79_B          496 L  496 (562)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.62  E-value=1.6e-15  Score=105.26  Aligned_cols=133  Identities=20%  Similarity=0.251  Sum_probs=107.6

Q ss_pred             CCCeeEEEecCCcccccccccccccchhhhhCC-CCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchh-c
Q 048040           20 TGHVKVLNLRTSDYEFARRKFLKGTISPALLKL-HDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRT-L   97 (178)
Q Consensus        20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~   97 (178)
                      ...++.|++++|        .+.. ++. +..+ ++|+.|++++|.+++  + ..+..+++|++|++++|.+..+|.. +
T Consensus        18 ~~~L~~L~l~~n--------~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~--~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~   84 (176)
T 1a9n_A           18 AVRDRELDLRGY--------KIPV-IEN-LGATLDQFDAIDFSDNEIRK--L-DGFPLLRRLKTLLVNNNRICRIGEGLD   84 (176)
T ss_dssp             TTSCEEEECTTS--------CCCS-CCC-GGGGTTCCSEEECCSSCCCE--E-CCCCCCSSCCEEECCSSCCCEECSCHH
T ss_pred             cCCceEEEeeCC--------CCch-hHH-hhhcCCCCCEEECCCCCCCc--c-cccccCCCCCEEECCCCcccccCcchh
Confidence            467899999999        5553 343 3444 499999999999987  4 6788999999999999988877754 4


Q ss_pred             cCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccH-HHHHhccCCCcEEEecCCCCC
Q 048040           98 RNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDW-FQVVAKLRSLKTFVLRSCALP  165 (178)
Q Consensus        98 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~-~~~~~~l~~L~~l~l~~n~~~  165 (178)
                      ..+++|+.|++++|++...+....+..+++|++|++++|.++..+.. ...+..+++|+.|++++|...
T Consensus        85 ~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           85 QALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             HHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             hcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            88999999999999986655434688999999999999999877641 224789999999999988754

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.62  E-value=1.1e-15  Score=124.21  Aligned_cols=133  Identities=20%  Similarity=0.155  Sum_probs=67.3

Q ss_pred             cccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCcc-chhccCCCCCcEEEeeCCccccC--
Q 048040           40 FLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV-PRTLRNFSGLEYLNLENSHLFSV--  116 (178)
Q Consensus        40 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~--  116 (178)
                      .+.+..|..+..+++|+.|++++|.+.....+..+..+++|++|++++|.+... |..+..+++|+.|++++|++.+.  
T Consensus       387 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  466 (606)
T 3t6q_A          387 EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI  466 (606)
T ss_dssp             SCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEE
T ss_pred             cCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccc
Confidence            444444555555666666666666655431122355555666666655543332 33455555566666665555331  


Q ss_pred             CchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCccccc
Q 048040          117 GSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICG  174 (178)
Q Consensus       117 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~  174 (178)
                      +....+..+++|++|++++|.+++.+  +..+..+++|++|++++|++++.+|+.+..
T Consensus       467 ~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~  522 (606)
T 3t6q_A          467 QKTNSLQTLGRLEILVLSFCDLSSID--QHAFTSLKMMNHVDLSHNRLTSSSIEALSH  522 (606)
T ss_dssp             CSSCGGGGCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCCGGGGGGGTT
T ss_pred             ccchhhccCCCccEEECCCCccCccC--hhhhccccCCCEEECCCCccCcCChhHhCc
Confidence            11122455555555555555555442  124455555555555555555555544443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.62  E-value=5.9e-15  Score=111.80  Aligned_cols=149  Identities=17%  Similarity=0.218  Sum_probs=97.5

Q ss_pred             CCeeEEEecCCccc-------------ccccccccccchhhhhCCCCCCEEEccCCCCCC--CCchhhhcccCCCcEEec
Q 048040           21 GHVKVLNLRTSDYE-------------FARRKFLKGTISPALLKLHDLRHLDLSNNDFGG--SPIPEFIGSLSKLRYLNL   85 (178)
Q Consensus        21 ~~l~~l~l~~~~~~-------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~~l~~l~~L~~L~l   85 (178)
                      ..++.|++++|.+.             .++.|.+.+..+..+..+.+|+.|++++|.+..  . .+..+..+++|++|++
T Consensus       100 ~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~l~~L~~L~l  178 (330)
T 1xku_A          100 VKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI-ENGAFQGMKKLSYIRI  178 (330)
T ss_dssp             TTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGB-CTTGGGGCTTCCEEEC
T ss_pred             CCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCc-ChhhccCCCCcCEEEC
Confidence            45666666666553             223445665555566677777777777776653  2 3445555555555555


Q ss_pred             cCC---------------------CCCcc-chhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCccc
Q 048040           86 SCG---------------------APLEV-PRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRD  143 (178)
Q Consensus        86 ~~~---------------------~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~  143 (178)
                      ++|                     .+..+ +..+..+++|+.|++++|++.+.. ...+..+++|++|++++|.++..+.
T Consensus       179 ~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~lp~  257 (330)
T 1xku_A          179 ADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD-NGSLANTPHLRELHLNNNKLVKVPG  257 (330)
T ss_dssp             CSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC-TTTGGGSTTCCEEECCSSCCSSCCT
T ss_pred             CCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC-hhhccCCCCCCEEECCCCcCccCCh
Confidence            544                     33333 345667778888888888775443 2346777888888888888887654


Q ss_pred             HHHHHhccCCCcEEEecCCCCCCCCCccccc
Q 048040          144 WFQVVAKLRSLKTFVLRSCALPPINPSFICG  174 (178)
Q Consensus       144 ~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~  174 (178)
                         .+..+++|++|++++|++++..+..|+.
T Consensus       258 ---~l~~l~~L~~L~l~~N~i~~~~~~~f~~  285 (330)
T 1xku_A          258 ---GLADHKYIQVVYLHNNNISAIGSNDFCP  285 (330)
T ss_dssp             ---TTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred             ---hhccCCCcCEEECCCCcCCccChhhcCC
Confidence               5677888888888888888877777654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.62  E-value=4e-15  Score=103.19  Aligned_cols=123  Identities=24%  Similarity=0.290  Sum_probs=65.8

Q ss_pred             eeeeeeeecCCC---------CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCC
Q 048040            9 CKWRGVHCRNTT---------GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSK   79 (178)
Q Consensus         9 c~~~~~~~~~~~---------~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~   79 (178)
                      |.|.++.|....         ..++.|++++|        .+.+..+..+..+.+|++|++++|.++.. .+..+..+++
T Consensus         7 C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n--------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~   77 (177)
T 2o6r_A            7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESN--------KLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTK   77 (177)
T ss_dssp             EETTEEECCSSCCSSCCTTCCTTCSEEECCSS--------CCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTT
T ss_pred             eCCCEEEecCCCCccCCCCCCCCCcEEEeCCC--------cccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCCCc
Confidence            566666664311         34555666655        44443344455556666666666666553 3334455666


Q ss_pred             CcEEeccCCCCCccch-hccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCc
Q 048040           80 LRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKS  141 (178)
Q Consensus        80 L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~  141 (178)
                      |++|++++|.+..++. .+..+++|+.|++++|++...+. ..+..+++|++|++++|.+...
T Consensus        78 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           78 LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCC
T ss_pred             cCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCH-HHhcCCcccCEEEecCCCeecc
Confidence            6666666664444433 34555666666666665543331 2234555666666666665544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.62  E-value=1.4e-15  Score=102.67  Aligned_cols=116  Identities=19%  Similarity=0.267  Sum_probs=98.6

Q ss_pred             CCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCE
Q 048040           51 KLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRH  130 (178)
Q Consensus        51 ~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  130 (178)
                      ...+|+.|++++|.++...+|..+..+++|++|++++|.+..+ ..+..+++|+.|++++|.+.+. .+..++.+++|++
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~   92 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTH   92 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCE
Confidence            3468999999999998222788889999999999999977766 7788999999999999998653 4566778999999


Q ss_pred             EeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCC
Q 048040          131 LDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINP  169 (178)
Q Consensus       131 L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  169 (178)
                      |++++|.+++.+. +..+..+++|++|++++|.+++..+
T Consensus        93 L~ls~N~i~~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~  130 (149)
T 2je0_A           93 LNLSGNKIKDLST-IEPLKKLENLKSLDLFNCEVTNLND  130 (149)
T ss_dssp             EECTTSCCCSHHH-HGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred             EECCCCcCCChHH-HHHHhhCCCCCEEeCcCCcccchHH
Confidence            9999999998752 3578899999999999999997665

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.61  E-value=1.1e-14  Score=100.91  Aligned_cols=133  Identities=20%  Similarity=0.233  Sum_probs=108.3

Q ss_pred             CeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch-hccCC
Q 048040           22 HVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRNF  100 (178)
Q Consensus        22 ~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l  100 (178)
                      ..++++++++        .+.. +|..  -.++|+.|++++|.++.. .+..+..+++|++|++++|.+..++. .+..+
T Consensus         8 ~~~~l~~~~~--------~l~~-~p~~--~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l   75 (177)
T 2o6r_A            8 SGTEIRCNSK--------GLTS-VPTG--IPSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKL   75 (177)
T ss_dssp             ETTEEECCSS--------CCSS-CCTT--CCTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred             CCCEEEecCC--------CCcc-CCCC--CCCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcceEeChhHccCC
Confidence            3577899888        4442 3332  236899999999999985 55677899999999999998777765 56899


Q ss_pred             CCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCC
Q 048040          101 SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINP  169 (178)
Q Consensus       101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  169 (178)
                      ++|+.|++++|++.+.+ ...+..+++|++|++++|.++..+.  ..+..+++|++|++++|++.+.+|
T Consensus        76 ~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~--~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           76 TKLTILYLHENKLQSLP-NGVFDKLTQLKELALDTNQLKSVPD--GIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             TTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CccCEEECCCCCccccC-HHHhhCCcccCEEECcCCcceEeCH--HHhcCCcccCEEEecCCCeeccCc
Confidence            99999999999986654 2346889999999999999998863  456889999999999999997665

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.61  E-value=1.1e-15  Score=121.89  Aligned_cols=119  Identities=18%  Similarity=0.127  Sum_probs=77.8

Q ss_pred             cccccchhhhhCCCCCCEEEccCCCCCCCCchhhhc-ccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCc
Q 048040           40 FLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIG-SLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGS  118 (178)
Q Consensus        40 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  118 (178)
                      .+.+..|..+..+++|+.|++++|.+++. .|..+. .+++|++|++++|.+..++. ...+++|+.|++++|.+.+.+ 
T Consensus       131 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~-  207 (487)
T 3oja_A          131 KITMLRDLDEGCRSRVQYLDLKLNEIDTV-NFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMG-  207 (487)
T ss_dssp             CCCSGGGBCGGGGSSEEEEECTTSCCCEE-EGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEEC-
T ss_pred             CCCCCCchhhcCCCCCCEEECCCCCCCCc-ChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCCCCCC-
Confidence            66666666666677777777777777764 455544 56777777777775555533 234677777777777765443 


Q ss_pred             hHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCC
Q 048040          119 LEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALP  165 (178)
Q Consensus       119 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~  165 (178)
                       ..+..+++|+.|++++|.+++.|.   .+..+++|+.|++++|++.
T Consensus       208 -~~~~~l~~L~~L~Ls~N~l~~lp~---~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          208 -PEFQSAAGVTWISLRNNKLVLIEK---ALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             -GGGGGGTTCSEEECTTSCCCEECT---TCCCCTTCCEEECTTCCBC
T ss_pred             -HhHcCCCCccEEEecCCcCcccch---hhccCCCCCEEEcCCCCCc
Confidence             226667777777777777776553   4566677777777777766

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.61  E-value=2.5e-15  Score=103.33  Aligned_cols=124  Identities=23%  Similarity=0.285  Sum_probs=102.4

Q ss_pred             hCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCC
Q 048040           50 LKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLR  129 (178)
Q Consensus        50 ~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  129 (178)
                      ...++|+.|++++|.++...+|..+..+++|++|++++|.+..+ ..+..+++|+.|++++|++.+. .+..+..+++|+
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~   98 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLT   98 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCC
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCC
Confidence            34578999999999998222788889999999999999977766 7788999999999999998664 345577899999


Q ss_pred             EEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCC---ccccccc
Q 048040          130 HLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINP---SFICGWE  176 (178)
Q Consensus       130 ~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~---~~~~~l~  176 (178)
                      +|++++|.+++.+. ...+..+++|++|++++|++.+..+   ..+..++
T Consensus        99 ~L~Ls~N~l~~~~~-~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~  147 (168)
T 2ell_A           99 HLNLSGNKLKDIST-LEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLP  147 (168)
T ss_dssp             EEECBSSSCCSSGG-GGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCS
T ss_pred             EEeccCCccCcchh-HHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCc
Confidence            99999999999753 3478899999999999999997665   3555443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.61  E-value=1.8e-15  Score=113.95  Aligned_cols=140  Identities=21%  Similarity=0.166  Sum_probs=93.6

Q ss_pred             CCCeeEEEecCCcccccccccccccchhhhhCC-----CCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCC-Cc-
Q 048040           20 TGHVKVLNLRTSDYEFARRKFLKGTISPALLKL-----HDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAP-LE-   92 (178)
Q Consensus        20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l-----~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~-   92 (178)
                      ...++.|++++|        .+.+. |..+..+     ++|++|++++|.+... .+..+..+++|++|++++|.+ +. 
T Consensus       120 l~~L~~L~Ls~N--------~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~  189 (312)
T 1wwl_A          120 GPDLNILNLRNV--------SWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNF-SCEQVRVFPALSTLDLSDNPELGER  189 (312)
T ss_dssp             SCCCSEEEEESC--------BCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCC-CTTTCCCCSSCCEEECCSCTTCHHH
T ss_pred             CCCccEEEccCC--------CCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccc-hHHHhccCCCCCEEECCCCCcCcch
Confidence            467899999999        66655 5555555     7888888888888775 557777888888888888743 32 


Q ss_pred             -cchhc--cCCCCCcEEEeeCCccccCCc--hHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCC
Q 048040           93 -VPRTL--RNFSGLEYLNLENSHLFSVGS--LEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPI  167 (178)
Q Consensus        93 -~~~~~--~~l~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~  167 (178)
                       .+..+  ..+++|+.|++++|++...+.  ...+..+++|++|++++|.+++.+. ...+..+++|++|++++|.++ .
T Consensus       190 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~l~~L~~L~Ls~N~l~-~  267 (312)
T 1wwl_A          190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG-APSCDWPSQLNSLNLSFTGLK-Q  267 (312)
T ss_dssp             HHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC-CSCCCCCTTCCEEECTTSCCS-S
T ss_pred             HHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc-hhhhhhcCCCCEEECCCCccC-h
Confidence             23333  677788888888887753221  1223566778888888887776531 123445677777777777777 4


Q ss_pred             CCcc
Q 048040          168 NPSF  171 (178)
Q Consensus       168 ~~~~  171 (178)
                      +|..
T Consensus       268 ip~~  271 (312)
T 1wwl_A          268 VPKG  271 (312)
T ss_dssp             CCSS
T ss_pred             hhhh
Confidence            4443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.61  E-value=4.3e-15  Score=109.51  Aligned_cols=130  Identities=22%  Similarity=0.243  Sum_probs=109.3

Q ss_pred             CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccC
Q 048040           20 TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRN   99 (178)
Q Consensus        20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~   99 (178)
                      ...++.|++++|        .+.+..+  +..+++|+.|++++|.++.  ++.. .. ++|++|++++|.+..++ .+..
T Consensus        62 l~~L~~L~L~~N--------~i~~~~~--l~~l~~L~~L~L~~N~l~~--l~~~-~~-~~L~~L~L~~N~l~~~~-~l~~  126 (263)
T 1xeu_A           62 FTNLKELHLSHN--------QISDLSP--LKDLTKLEELSVNRNRLKN--LNGI-PS-ACLSRLFLDNNELRDTD-SLIH  126 (263)
T ss_dssp             CTTCCEEECCSS--------CCCCCGG--GTTCSSCCEEECCSSCCSC--CTTC-CC-SSCCEEECCSSCCSBSG-GGTT
T ss_pred             CCCCCEEECCCC--------ccCCChh--hccCCCCCEEECCCCccCC--cCcc-cc-CcccEEEccCCccCCCh-hhcC
Confidence            468999999999        6665444  8899999999999999988  4433 23 89999999999877765 5889


Q ss_pred             CCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCcc
Q 048040          100 FSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSF  171 (178)
Q Consensus       100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~  171 (178)
                      +++|+.|++++|++.+.+   .+..+++|++|++++|.+++..    .+..+++|+.|++++|++.......
T Consensus       127 l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~~~----~l~~l~~L~~L~l~~N~~~~~~~~~  191 (263)
T 1xeu_A          127 LKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITNTG----GLTRLKKVNWIDLTGQKCVNEPVKY  191 (263)
T ss_dssp             CTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTTSCCCBCT----TSTTCCCCCEEEEEEEEEECCCEEC
T ss_pred             cccccEEECCCCcCCCCh---HHccCCCCCEEECCCCcCcchH----HhccCCCCCEEeCCCCcccCCcccc
Confidence            999999999999987663   4888999999999999998873    6789999999999999988764443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.61  E-value=8.2e-16  Score=116.09  Aligned_cols=119  Identities=18%  Similarity=0.131  Sum_probs=62.0

Q ss_pred             cccccchhhhhCCCCCCEEEccCCCCCCCCchhhh-cccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCc
Q 048040           40 FLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFI-GSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGS  118 (178)
Q Consensus        40 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  118 (178)
                      .+.+..+..+..+++|+.|++++|.++.. .+..+ ..+++|++|++++|.+..++.. ..+++|+.|++++|++.+.+ 
T Consensus       131 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~-  207 (317)
T 3o53_A          131 KITMLRDLDEGCRSRVQYLDLKLNEIDTV-NFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMG-  207 (317)
T ss_dssp             CCCSGGGBCTGGGSSEEEEECTTSCCCEE-EGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEEC-
T ss_pred             CCCCccchhhhccCCCCEEECCCCCCCcc-cHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcch-
Confidence            44444444455555555555555555553 23333 2455555566555544444322 23555666666666554332 


Q ss_pred             hHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCC
Q 048040          119 LEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALP  165 (178)
Q Consensus       119 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~  165 (178)
                       ..+..+++|++|++++|.++..+.   .+..+++|+.|++++|++.
T Consensus       208 -~~~~~l~~L~~L~L~~N~l~~l~~---~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          208 -PEFQSAAGVTWISLRNNKLVLIEK---ALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             -GGGGGGTTCSEEECTTSCCCEECT---TCCCCTTCCEEECTTCCCB
T ss_pred             -hhhcccCcccEEECcCCcccchhh---HhhcCCCCCEEEccCCCcc
Confidence             125555566666666666655443   3455556666666666555

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.60  E-value=1.1e-15  Score=110.91  Aligned_cols=148  Identities=14%  Similarity=0.110  Sum_probs=92.9

Q ss_pred             CCeeEEEecCCc-cc----------------cccc-ccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCc-
Q 048040           21 GHVKVLNLRTSD-YE----------------FARR-KFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLR-   81 (178)
Q Consensus        21 ~~l~~l~l~~~~-~~----------------~~~~-~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~-   81 (178)
                      ..++.|++++|. +.                .+++ |.+.+..+..|..+++|+.|++++|.++.  +|. +..+++|+ 
T Consensus        55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~--lp~-~~~l~~L~~  131 (239)
T 2xwt_C           55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM--FPD-LTKVYSTDI  131 (239)
T ss_dssp             TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS--CCC-CTTCCBCCS
T ss_pred             CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc--ccc-ccccccccc
Confidence            668888888885 42                2233 45554444556666666666666666665  343 55555665 


Q ss_pred             --EEeccCC-CCCccch-hccCCCCCc-EEEeeCCccccCCchHHHhccCCCCEEeccCCC-CCCcccHHHHHhcc-CCC
Q 048040           82 --YLNLSCG-APLEVPR-TLRNFSGLE-YLNLENSHLFSVGSLEWLSHLSSLRHLDLSYIN-LTKSRDWFQVVAKL-RSL  154 (178)
Q Consensus        82 --~L~l~~~-~~~~~~~-~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~~l-~~L  154 (178)
                        +|++++| .+..++. .+..+++|+ .|++++|++...+. ..+.. ++|++|++++|. ++..+  ...+..+ ++|
T Consensus       132 L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~-~~~~~-~~L~~L~L~~n~~l~~i~--~~~~~~l~~~L  207 (239)
T 2xwt_C          132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG-YAFNG-TKLDAVYLNKNKYLTVID--KDAFGGVYSGP  207 (239)
T ss_dssp             EEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT-TTTTT-CEEEEEECTTCTTCCEEC--TTTTTTCSBCC
T ss_pred             ccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH-hhcCC-CCCCEEEcCCCCCcccCC--HHHhhccccCC
Confidence              6777666 6666554 466677777 77777777654432 11233 677778888774 77664  2356677 788


Q ss_pred             cEEEecCCCCCCCCCcccccc
Q 048040          155 KTFVLRSCALPPINPSFICGW  175 (178)
Q Consensus       155 ~~l~l~~n~~~~~~~~~~~~l  175 (178)
                      +.|++++|++++..+..+..+
T Consensus       208 ~~L~l~~N~l~~l~~~~~~~L  228 (239)
T 2xwt_C          208 SLLDVSQTSVTALPSKGLEHL  228 (239)
T ss_dssp             SEEECTTCCCCCCCCTTCTTC
T ss_pred             cEEECCCCccccCChhHhccC
Confidence            888888888876655545444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.60  E-value=4.1e-15  Score=118.52  Aligned_cols=145  Identities=19%  Similarity=0.137  Sum_probs=107.4

Q ss_pred             CCCeeEEEecCCccc-----------ccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCC
Q 048040           20 TGHVKVLNLRTSDYE-----------FARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCG   88 (178)
Q Consensus        20 ~~~l~~l~l~~~~~~-----------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~   88 (178)
                      ...++.|++++|.+.           .+++|.+.+..+.   .+++|+.|++++|.+++. .|..+..+++|++|++++|
T Consensus        79 l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N  154 (487)
T 3oja_A           79 LSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITML-RDLDEGCRSRVQYLDLKLN  154 (487)
T ss_dssp             CTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSG-GGBCGGGGSSEEEEECTTS
T ss_pred             CCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCC-CchhhcCCCCCCEEECCCC
Confidence            345666666666553           2344455544432   457788889999998885 5777888999999999999


Q ss_pred             CCCc-cchhcc-CCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCC
Q 048040           89 APLE-VPRTLR-NFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPP  166 (178)
Q Consensus        89 ~~~~-~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~  166 (178)
                      .+.. .|..+. .+++|+.|++++|.+.+.+.   ...+++|++|++++|.+++.+.   .+..+++|+.|++++|.+++
T Consensus       155 ~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~---~~~l~~L~~L~Ls~N~l~~~~~---~~~~l~~L~~L~Ls~N~l~~  228 (487)
T 3oja_A          155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVKG---QVVFAKLKTLDLSSNKLAFMGP---EFQSAAGVTWISLRNNKLVL  228 (487)
T ss_dssp             CCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC---CCCCTTCCEEECCSSCCCEECG---GGGGGTTCSEEECTTSCCCE
T ss_pred             CCCCcChHHHhhhCCcccEEecCCCccccccc---cccCCCCCEEECCCCCCCCCCH---hHcCCCCccEEEecCCcCcc
Confidence            6655 455664 78999999999999866532   4458899999999999998864   47889999999999999996


Q ss_pred             CCCcccccc
Q 048040          167 INPSFICGW  175 (178)
Q Consensus       167 ~~~~~~~~l  175 (178)
                       +|..+..+
T Consensus       229 -lp~~l~~l  236 (487)
T 3oja_A          229 -IEKALRFS  236 (487)
T ss_dssp             -ECTTCCCC
T ss_pred             -cchhhccC
Confidence             55555543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.60  E-value=8.6e-15  Score=118.63  Aligned_cols=108  Identities=23%  Similarity=0.239  Sum_probs=59.4

Q ss_pred             CCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEecc
Q 048040           55 LRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLS  134 (178)
Q Consensus        55 L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  134 (178)
                      |+.|++++|.++.  +|. +..+++|+.|++++|.+..+|..+..+++|+.|++++|++.+.+   .++.+++|++|+++
T Consensus       443 L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp---~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          443 VRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD---GVANLPRLQELLLC  516 (567)
T ss_dssp             CSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG---GGTTCSSCCEEECC
T ss_pred             ceEEEecCCCCCC--CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc---ccCCCCCCcEEECC
Confidence            5556666665555  343 55555666666665555555555555666666666666554432   35555566666666


Q ss_pred             CCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCC
Q 048040          135 YINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINP  169 (178)
Q Consensus       135 ~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  169 (178)
                      +|.+++.+. +..++.+++|+.|++++|++++.+|
T Consensus       517 ~N~l~~~~~-p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          517 NNRLQQSAA-IQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             SSCCCSSST-TGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             CCCCCCCCC-cHHHhcCCCCCEEEecCCcCCCCcc
Confidence            666555510 1245555666666666665554433

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.59  E-value=1.5e-15  Score=115.04  Aligned_cols=143  Identities=24%  Similarity=0.213  Sum_probs=79.6

Q ss_pred             CCeeEEEecCCccccccccccccc-chhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCC-CCCc--cchh
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGT-ISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCG-APLE--VPRT   96 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~--~~~~   96 (178)
                      ..++.|++++|        .+.+. ++..+..+++|+.|++++|.+++. .+..+..+++|++|++++| .+..  ++..
T Consensus        93 ~~L~~L~L~~~--------~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~-~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~  163 (336)
T 2ast_B           93 FRVQHMDLSNS--------VIEVSTLHGILSQCSKLQNLSLEGLRLSDP-IVNTLAKNSNLVRLNLSGCSGFSEFALQTL  163 (336)
T ss_dssp             BCCCEEECTTC--------EECHHHHHHHHTTBCCCSEEECTTCBCCHH-HHHHHTTCTTCSEEECTTCBSCCHHHHHHH
T ss_pred             CCCCEEEccCC--------CcCHHHHHHHHhhCCCCCEEeCcCcccCHH-HHHHHhcCCCCCEEECCCCCCCCHHHHHHH
Confidence            34555555555        45444 555566666666666666666653 5556666666666666666 4442  3444


Q ss_pred             ccCCCCCcEEEeeCC-ccccCCchHHHhccC-CCCEEeccCC--CCCCcccHHHHHhccCCCcEEEecCCC-CCCCCCcc
Q 048040           97 LRNFSGLEYLNLENS-HLFSVGSLEWLSHLS-SLRHLDLSYI--NLTKSRDWFQVVAKLRSLKTFVLRSCA-LPPINPSF  171 (178)
Q Consensus        97 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~-~L~~L~l~~n--~i~~~~~~~~~~~~l~~L~~l~l~~n~-~~~~~~~~  171 (178)
                      +..+++|+.|++++| .+.....+..+..++ +|++|++++|  .+++. .++..+..+++|++|++++|. +++..+..
T Consensus       164 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~  242 (336)
T 2ast_B          164 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS-DLSTLVRRCPNLVHLDLSDSVMLKNDCFQE  242 (336)
T ss_dssp             HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH-HHHHHHHHCTTCSEEECTTCTTCCGGGGGG
T ss_pred             HhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHH-HHHHHHhhCCCCCEEeCCCCCcCCHHHHHH
Confidence            555666666666666 553332334455566 6666666666  33322 123345556666666666665 44444444


Q ss_pred             cc
Q 048040          172 IC  173 (178)
Q Consensus       172 ~~  173 (178)
                      ++
T Consensus       243 l~  244 (336)
T 2ast_B          243 FF  244 (336)
T ss_dssp             GG
T ss_pred             Hh
Confidence            43

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.59  E-value=2e-14  Score=117.27  Aligned_cols=126  Identities=25%  Similarity=0.291  Sum_probs=62.0

Q ss_pred             CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccC
Q 048040           20 TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRN   99 (178)
Q Consensus        20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~   99 (178)
                      ...|+.|+|++|        .+.+..+  +..+++|+.|+|++|.+..  ++ .+..+++|+.|++++|.+..+ ..+..
T Consensus        64 l~~L~~L~Ls~N--------~l~~~~~--l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~  129 (605)
T 1m9s_A           64 LPNVTKLFLNGN--------KLTDIKP--LTNLKNLGWLFLDENKIKD--LS-SLKDLKKLKSLSLEHNGISDI-NGLVH  129 (605)
T ss_dssp             CTTCCEEECTTS--------CCCCCGG--GGGCTTCCEEECCSSCCCC--CT-TSTTCTTCCEEECTTSCCCCC-GGGGG
T ss_pred             CCCCCEEEeeCC--------CCCCChh--hccCCCCCEEECcCCCCCC--Ch-hhccCCCCCEEEecCCCCCCC-ccccC
Confidence            356777777777        3443222  4555555555555555554  22 344555555555555544333 23444


Q ss_pred             CCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCC
Q 048040          100 FSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPP  166 (178)
Q Consensus       100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~  166 (178)
                      +++|+.|++++|++...   ..+..+++|++|++++|.+++.+.    +..+++|+.|++++|.+.+
T Consensus       130 l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          130 LPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNHISD  189 (605)
T ss_dssp             CTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCB
T ss_pred             CCccCEEECCCCccCCc---hhhcccCCCCEEECcCCcCCCchh----hccCCCCCEEECcCCCCCC
Confidence            45555555555554332   224444555555555555544431    4444455555555544443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.59  E-value=4e-15  Score=125.53  Aligned_cols=142  Identities=23%  Similarity=0.245  Sum_probs=109.9

Q ss_pred             CCCeeEEEecCCcccccccccccccc-hhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCc-cchh-
Q 048040           20 TGHVKVLNLRTSDYEFARRKFLKGTI-SPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLE-VPRT-   96 (178)
Q Consensus        20 ~~~l~~l~l~~~~~~~~~~~~l~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~-   96 (178)
                      -..++.|++++|        ...+.+ |..|.++++|++|++++|.+... .|..+..+++|++|++++|.+.. .|.. 
T Consensus        47 l~~L~~LdLs~n--------~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~  117 (844)
T 3j0a_A           47 LEQLQLLELGSQ--------YTPLTIDKEAFRNLPNLRILDLGSSKIYFL-HPDAFQGLFHLFELRLYFCGLSDAVLKDG  117 (844)
T ss_dssp             CCSCSEEEECTT--------CCCCEECTTTTSSCTTCCEEECTTCCCCEE-CTTSSCSCSSCCCEECTTCCCSSCCSTTC
T ss_pred             cccCeEEeCCCC--------CCccccCHHHhcCCCCCCEEECCCCcCccc-CHhHccCCcccCEeeCcCCCCCcccccCc
Confidence            477999999998        555566 66889999999999999999885 68889999999999999996553 4543 


Q ss_pred             -ccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhcc--CCCcEEEecCCCCCCCCCccc
Q 048040           97 -LRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKL--RSLKTFVLRSCALPPINPSFI  172 (178)
Q Consensus        97 -~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l--~~L~~l~l~~n~~~~~~~~~~  172 (178)
                       +..+++|++|++++|.+.+......++.+++|++|++++|.+++...  ..+..+  ++|+.|+++.|.+.+..|..+
T Consensus       118 ~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~--~~l~~l~~~~L~~L~L~~n~l~~~~~~~~  194 (844)
T 3j0a_A          118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE--HELEPLQGKTLSFFSLAANSLYSRVSVDW  194 (844)
T ss_dssp             CCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS--GGGHHHHHCSSCCCEECCSBSCCCCCCCC
T ss_pred             cccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH--HHcccccCCccceEECCCCccccccccch
Confidence             88899999999999998776554568899999999999999877631  233333  666677777666666555543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.59  E-value=8.8e-16  Score=127.66  Aligned_cols=141  Identities=23%  Similarity=0.212  Sum_probs=111.8

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNF  100 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l  100 (178)
                      ..++.|+|++|        .+. .+|..+..+.+|+.|+|++|.++.  +|..+..+++|++|+|++|.+..+|..+..+
T Consensus       224 ~~L~~L~Ls~n--------~l~-~l~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l  292 (727)
T 4b8c_D          224 QLWHALDLSNL--------QIF-NISANIFKYDFLTRLYLNGNSLTE--LPAEIKNLSNLRVLDLSHNRLTSLPAELGSC  292 (727)
T ss_dssp             CCCCEEECTTS--------CCS-CCCGGGGGCCSCSCCBCTTSCCSC--CCGGGGGGTTCCEEECTTSCCSSCCSSGGGG
T ss_pred             CCCcEEECCCC--------CCC-CCChhhcCCCCCCEEEeeCCcCcc--cChhhhCCCCCCEEeCcCCcCCccChhhcCC
Confidence            56777888887        666 677777799999999999999995  8899999999999999999888899999999


Q ss_pred             CCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccC-CCcEEEecCCCCCCCCCccccccc
Q 048040          101 SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLR-SLKTFVLRSCALPPINPSFICGWE  176 (178)
Q Consensus       101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~-~L~~l~l~~n~~~~~~~~~~~~l~  176 (178)
                      ++|+.|++++|.+..++  ..++.+++|++|++++|.+++.+  +..+..+. .+..+++.+|.+++.+|..+..+.
T Consensus       293 ~~L~~L~L~~N~l~~lp--~~~~~l~~L~~L~L~~N~l~~~~--p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~l~  365 (727)
T 4b8c_D          293 FQLKYFYFFDNMVTTLP--WEFGNLCNLQFLGVEGNPLEKQF--LKILTEKSVTGLIFYLRDNRPEIPLPHERRFIE  365 (727)
T ss_dssp             TTCSEEECCSSCCCCCC--SSTTSCTTCCCEECTTSCCCSHH--HHHHHHHHHHHHHHHHHHCCCCCCCCCC-----
T ss_pred             CCCCEEECCCCCCCccC--hhhhcCCCccEEeCCCCccCCCC--hHHHhhcchhhhHHhhccCcccCcCccccceeE
Confidence            99999999999986554  34899999999999999999874  23443332 223467778888888887776554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.59  E-value=6.1e-15  Score=116.83  Aligned_cols=150  Identities=19%  Similarity=0.171  Sum_probs=70.8

Q ss_pred             CCeeEEEecCCccc----------------ccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEe
Q 048040           21 GHVKVLNLRTSDYE----------------FARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLN   84 (178)
Q Consensus        21 ~~l~~l~l~~~~~~----------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~   84 (178)
                      ..++.|++++|.+.                .+..|.+.+..+..+..+++|+.|++++|.+... .+..+..+++|+.|+
T Consensus       128 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~  206 (477)
T 2id5_A          128 YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI-RDYSFKRLYRLKVLE  206 (477)
T ss_dssp             TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE-CTTCSCSCTTCCEEE
T ss_pred             ccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe-ChhhcccCcccceee
Confidence            56777777777432                1222344444444455555555555555555543 233444444444444


Q ss_pred             ccCC-CCCccch------------------------hccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCC
Q 048040           85 LSCG-APLEVPR------------------------TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLT  139 (178)
Q Consensus        85 l~~~-~~~~~~~------------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~  139 (178)
                      +++| ....+|.                        .+..+++|+.|++++|++.... ...+..+++|+.|++++|.++
T Consensus       207 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~  285 (477)
T 2id5_A          207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE-GSMLHELLRLQEIQLVGGQLA  285 (477)
T ss_dssp             EECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEEC-TTSCTTCTTCCEEECCSSCCS
T ss_pred             CCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccC-hhhccccccCCEEECCCCccc
Confidence            4443 2222222                        2334444444444444433222 112344444555555555544


Q ss_pred             CcccHHHHHhccCCCcEEEecCCCCCCCCCccccc
Q 048040          140 KSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICG  174 (178)
Q Consensus       140 ~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~  174 (178)
                      +..  +..+..+++|+.|++++|.+++..+..|..
T Consensus       286 ~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  318 (477)
T 2id5_A          286 VVE--PYAFRGLNYLRVLNVSGNQLTTLEESVFHS  318 (477)
T ss_dssp             EEC--TTTBTTCTTCCEEECCSSCCSCCCGGGBSC
T ss_pred             eEC--HHHhcCcccCCEEECCCCcCceeCHhHcCC
Confidence            442  224555666666666666666555554443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.59  E-value=1.8e-14  Score=109.70  Aligned_cols=144  Identities=17%  Similarity=0.270  Sum_probs=102.7

Q ss_pred             CCCCeeEEEecCCccc--------------ccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEe
Q 048040           19 TTGHVKVLNLRTSDYE--------------FARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLN   84 (178)
Q Consensus        19 ~~~~l~~l~l~~~~~~--------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~   84 (178)
                      ....++.|++++|.+.              .+++|.+.+.. . +..+++|+.+++++|.+...  +. +..+++|++|+
T Consensus       153 ~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~--~~-~~~~~~L~~L~  227 (347)
T 4fmz_A          153 NMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDIS-P-LASLTSLHYFTAYVNQITDI--TP-VANMTRLNSLK  227 (347)
T ss_dssp             TCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCG-G-GGGCTTCCEEECCSSCCCCC--GG-GGGCTTCCEEE
T ss_pred             hCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccc-c-ccCCCccceeecccCCCCCC--ch-hhcCCcCCEEE
Confidence            4468999999999653              22334444322 2 55666666666666666653  22 66778888888


Q ss_pred             ccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCC
Q 048040           85 LSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCAL  164 (178)
Q Consensus        85 l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~  164 (178)
                      +++|.+..++. +..+++|+.|++++|.+...   ..+..+++|++|++++|.+++.+    .+..+++|+.|++++|.+
T Consensus       228 l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~L~~n~l  299 (347)
T 4fmz_A          228 IGNNKITDLSP-LANLSQLTWLEIGTNQISDI---NAVKDLTKLKMLNVGSNQISDIS----VLNNLSQLNSLFLNNNQL  299 (347)
T ss_dssp             CCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCC
T ss_pred             ccCCccCCCcc-hhcCCCCCEEECCCCccCCC---hhHhcCCCcCEEEccCCccCCCh----hhcCCCCCCEEECcCCcC
Confidence            88886666655 77888888888888887554   33777888888888888888775    467888899999999988


Q ss_pred             CCCCCcccccc
Q 048040          165 PPINPSFICGW  175 (178)
Q Consensus       165 ~~~~~~~~~~l  175 (178)
                      .+..|..++.+
T Consensus       300 ~~~~~~~l~~l  310 (347)
T 4fmz_A          300 GNEDMEVIGGL  310 (347)
T ss_dssp             CGGGHHHHHTC
T ss_pred             CCcChhHhhcc
Confidence            87777666554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.59  E-value=2.7e-14  Score=112.99  Aligned_cols=110  Identities=20%  Similarity=0.316  Sum_probs=62.6

Q ss_pred             hhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCC
Q 048040           49 LLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSL  128 (178)
Q Consensus        49 l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  128 (178)
                      +..+++|+.|++++|.++..  +. +..+++|+.|++++|.+..++. +..+++|+.|++++|++.+...   +..+++|
T Consensus       261 ~~~l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L  333 (466)
T 1o6v_A          261 LSGLTKLTELKLGANQISNI--SP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP---VSSLTKL  333 (466)
T ss_dssp             GTTCTTCSEEECCSSCCCCC--GG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG---GGGCTTC
T ss_pred             hhcCCCCCEEECCCCccCcc--cc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh---hccCccC
Confidence            55566666666666666552  22 5556666666666665444433 4555666666666666543321   4555666


Q ss_pred             CEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCC
Q 048040          129 RHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINP  169 (178)
Q Consensus       129 ~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  169 (178)
                      ++|++++|.+++.+    .+..+++|+.|++++|++.+..|
T Consensus       334 ~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~~~~  370 (466)
T 1o6v_A          334 QRLFFYNNKVSDVS----SLANLTNINWLSAGHNQISDLTP  370 (466)
T ss_dssp             CEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCCBCGG
T ss_pred             CEeECCCCccCCch----hhccCCCCCEEeCCCCccCccch
Confidence            66666666665553    34556666666666666655444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.59  E-value=1.9e-14  Score=115.69  Aligned_cols=143  Identities=17%  Similarity=0.198  Sum_probs=88.5

Q ss_pred             CCCeeEEEecCCcccccccccccccchhh---hhCCCCCCEEEccCCCCCCCCch---hhhcccCCCcEEeccCCCCCcc
Q 048040           20 TGHVKVLNLRTSDYEFARRKFLKGTISPA---LLKLHDLRHLDLSNNDFGGSPIP---EFIGSLSKLRYLNLSCGAPLEV   93 (178)
Q Consensus        20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~~---l~~l~~L~~L~l~~n~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~~   93 (178)
                      ...++.|++++|        .+.+.+|..   +..+++|+.|++++|.++.  ++   ..+..+++|++|++++|.+..+
T Consensus       333 l~~L~~L~Ls~N--------~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~~~l~~L~~L~Ls~N~l~~l  402 (549)
T 2z81_A          333 LKSLEFLDLSEN--------LMVEEYLKNSACKGAWPSLQTLVLSQNHLRS--MQKTGEILLTLKNLTSLDISRNTFHPM  402 (549)
T ss_dssp             CTTCCEEECCSS--------CCCHHHHHHHTCTTSSTTCCEEECTTSCCCC--HHHHHHHGGGCTTCCEEECTTCCCCCC
T ss_pred             CccccEEEccCC--------ccccccccchhhhhccccCcEEEccCCcccc--cccchhhhhcCCCCCEEECCCCCCccC
Confidence            357888888888        555544332   4556666666666666665  22   3456666666666666655555


Q ss_pred             chhccCCCCCcEEEeeCCccccCCch----------------HHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEE
Q 048040           94 PRTLRNFSGLEYLNLENSHLFSVGSL----------------EWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTF  157 (178)
Q Consensus        94 ~~~~~~l~~L~~L~l~~n~l~~~~~~----------------~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l  157 (178)
                      |..+..+++|+.|++++|++...+..                .....+++|++|++++|.++..+.    ...+++|++|
T Consensus       403 p~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~----~~~l~~L~~L  478 (549)
T 2z81_A          403 PDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD----ASLFPVLLVM  478 (549)
T ss_dssp             CSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC----GGGCTTCCEE
T ss_pred             ChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC----cccCccCCEE
Confidence            55555555555555555554322110                001356778888888888876663    3567788888


Q ss_pred             EecCCCCCCCCCccccccc
Q 048040          158 VLRSCALPPINPSFICGWE  176 (178)
Q Consensus       158 ~l~~n~~~~~~~~~~~~l~  176 (178)
                      ++++|++++.+|..+..++
T Consensus       479 ~Ls~N~l~~~~~~~~~~l~  497 (549)
T 2z81_A          479 KISRNQLKSVPDGIFDRLT  497 (549)
T ss_dssp             ECCSSCCCCCCTTGGGGCT
T ss_pred             ecCCCccCCcCHHHHhcCc
Confidence            8888888877777665543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.59  E-value=5.7e-15  Score=113.43  Aligned_cols=135  Identities=24%  Similarity=0.240  Sum_probs=113.0

Q ss_pred             CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCcc-chhcc
Q 048040           20 TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV-PRTLR   98 (178)
Q Consensus        20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~   98 (178)
                      ...++.|++++|        .+.+..+..|..+.+|+.|+|++|.++.. .+..|..+++|+.|++++|.+..+ +..+.
T Consensus        63 l~~L~~L~L~~N--------~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~  133 (361)
T 2xot_A           63 LTNLHSLLLSHN--------HLNFISSEAFVPVPNLRYLDLSSNHLHTL-DEFLFSDLQALEVLLLYNNHIVVVDRNAFE  133 (361)
T ss_dssp             CTTCCEEECCSS--------CCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             ccccCEEECCCC--------cCCccChhhccCCCCCCEEECCCCcCCcC-CHHHhCCCcCCCEEECCCCcccEECHHHhC
Confidence            467899999999        77776677899999999999999999985 566789999999999999977766 56889


Q ss_pred             CCCCCcEEEeeCCccccCCchHHH---hccCCCCEEeccCCCCCCcccHHHHHhccCC--CcEEEecCCCCCC
Q 048040           99 NFSGLEYLNLENSHLFSVGSLEWL---SHLSSLRHLDLSYINLTKSRDWFQVVAKLRS--LKTFVLRSCALPP  166 (178)
Q Consensus        99 ~l~~L~~L~l~~n~l~~~~~~~~~---~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~--L~~l~l~~n~~~~  166 (178)
                      .+++|+.|++++|++...+. ..+   ..+++|++|++++|.++..+  ...+..++.  ++.|++++|++..
T Consensus       134 ~l~~L~~L~L~~N~l~~l~~-~~~~~~~~l~~L~~L~L~~N~l~~l~--~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          134 DMAQLQKLYLSQNQISRFPV-ELIKDGNKLPKLMLLDLSSNKLKKLP--LTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             TCTTCCEEECCSSCCCSCCG-GGTC----CTTCCEEECCSSCCCCCC--HHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             CcccCCEEECCCCcCCeeCH-HHhcCcccCCcCCEEECCCCCCCccC--HHHhhhccHhhcceEEecCCCccC
Confidence            99999999999999976653 223   57899999999999999887  457778876  4889999998864

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.58  E-value=1.7e-14  Score=109.40  Aligned_cols=150  Identities=17%  Similarity=0.226  Sum_probs=104.4

Q ss_pred             CCeeEEEecCCccc-------------ccccccccccchhhhhCCCCCCEEEccCCCCCC--CCchhhhccc--------
Q 048040           21 GHVKVLNLRTSDYE-------------FARRKFLKGTISPALLKLHDLRHLDLSNNDFGG--SPIPEFIGSL--------   77 (178)
Q Consensus        21 ~~l~~l~l~~~~~~-------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~~l~~l--------   77 (178)
                      ..++.|++++|.+.             .+++|.+.+..+..+..+++|+.|++++|.++.  . .+..+..+        
T Consensus       102 ~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~l~L~~L~l~  180 (332)
T 2ft3_A          102 RKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF-EPGAFDGLKLNYLRIS  180 (332)
T ss_dssp             TTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGS-CTTSSCSCCCSCCBCC
T ss_pred             CCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCC-CcccccCCccCEEECc
Confidence            56777777777653             234446665555567778888888888887752  2 23333333        


Q ss_pred             ------------CCCcEEeccCCCCCccc-hhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccH
Q 048040           78 ------------SKLRYLNLSCGAPLEVP-RTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDW  144 (178)
Q Consensus        78 ------------~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~  144 (178)
                                  ++|++|++++|.+..++ ..+..+++|+.|++++|++.+.. +..+..+++|++|++++|.++..+. 
T Consensus       181 ~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~lp~-  258 (332)
T 2ft3_A          181 EAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE-NGSLSFLPTLRELHLDNNKLSRVPA-  258 (332)
T ss_dssp             SSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC-TTGGGGCTTCCEEECCSSCCCBCCT-
T ss_pred             CCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC-hhHhhCCCCCCEEECCCCcCeecCh-
Confidence                        35566666666444443 46777888888888888875554 2347788899999999999887764 


Q ss_pred             HHHHhccCCCcEEEecCCCCCCCCCcccccc
Q 048040          145 FQVVAKLRSLKTFVLRSCALPPINPSFICGW  175 (178)
Q Consensus       145 ~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l  175 (178)
                        .+..+++|++|++++|++++..+..|+..
T Consensus       259 --~l~~l~~L~~L~l~~N~l~~~~~~~~~~~  287 (332)
T 2ft3_A          259 --GLPDLKLLQVVYLHTNNITKVGVNDFCPV  287 (332)
T ss_dssp             --TGGGCTTCCEEECCSSCCCBCCTTSSSCS
T ss_pred             --hhhcCccCCEEECCCCCCCccChhHcccc
Confidence              57888999999999999988777776654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.57  E-value=2.1e-15  Score=113.80  Aligned_cols=57  Identities=32%  Similarity=0.334  Sum_probs=29.9

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCG   88 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~   88 (178)
                      ..++.|++++|        .+.+..|..+..+++|+.|++++|.+++.  +. +..+++|++|++++|
T Consensus        34 ~~L~~L~L~~n--------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~-~~~l~~L~~L~Ls~n   90 (317)
T 3o53_A           34 WNVKELDLSGN--------PLSQISAADLAPFTKLELLNLSSNVLYET--LD-LESLSTLRTLDLNNN   90 (317)
T ss_dssp             GGCSEEECTTS--------CCCCCCHHHHTTCTTCCEEECTTSCCEEE--EE-ETTCTTCCEEECCSS
T ss_pred             CCCCEEECcCC--------ccCcCCHHHhhCCCcCCEEECCCCcCCcc--hh-hhhcCCCCEEECcCC
Confidence            46777888777        44444444555555555555555555432  11 444444444444444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.57  E-value=2.1e-14  Score=117.10  Aligned_cols=134  Identities=23%  Similarity=0.285  Sum_probs=112.6

Q ss_pred             CCCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhcc
Q 048040           19 TTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLR   98 (178)
Q Consensus        19 ~~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~   98 (178)
                      ....|+.|+|++|        .+.+ + +.+..+++|+.|+|++|.+..  + ..+..+++|+.|++++|.+..+ ..+.
T Consensus        85 ~l~~L~~L~Ls~N--------~l~~-l-~~l~~l~~L~~L~Ls~N~l~~--l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~  150 (605)
T 1m9s_A           85 NLKNLGWLFLDEN--------KIKD-L-SSLKDLKKLKSLSLEHNGISD--I-NGLVHLPQLESLYLGNNKITDI-TVLS  150 (605)
T ss_dssp             GCTTCCEEECCSS--------CCCC-C-TTSTTCTTCCEEECTTSCCCC--C-GGGGGCTTCSEEECCSSCCCCC-GGGG
T ss_pred             cCCCCCEEECcCC--------CCCC-C-hhhccCCCCCEEEecCCCCCC--C-ccccCCCccCEEECCCCccCCc-hhhc
Confidence            3467999999999        5553 2 358889999999999999987  4 3588999999999999977766 6788


Q ss_pred             CCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCcccc
Q 048040           99 NFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFIC  173 (178)
Q Consensus        99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~  173 (178)
                      .+++|+.|++++|.+.+...   +..+++|++|++++|.+++.+    .+..+++|+.|++++|++.+.+...+.
T Consensus       151 ~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~l~----~l~~l~~L~~L~L~~N~l~~~p~~~~~  218 (605)
T 1m9s_A          151 RLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLR----ALAGLKNLDVLELFSQECLNKPINHQS  218 (605)
T ss_dssp             SCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBCG----GGTTCTTCSEEECCSEEEECCCCCCCS
T ss_pred             ccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCCCCh----HHccCCCCCEEEccCCcCcCCcccccc
Confidence            99999999999999866543   888999999999999999875    578899999999999998876544443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.57  E-value=1.1e-17  Score=118.22  Aligned_cols=118  Identities=23%  Similarity=0.247  Sum_probs=96.1

Q ss_pred             hhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhcc
Q 048040           46 SPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHL  125 (178)
Q Consensus        46 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l  125 (178)
                      |..+..+++|+.|++++|.++.  +| .+..+++|++|++++|.+..+|..+..+++|+.|++++|++.+.   ..+..+
T Consensus        41 ~~~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l---~~~~~l  114 (198)
T 1ds9_A           41 DATLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL---SGIEKL  114 (198)
T ss_dssp             HHHHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCH---HHHHHH
T ss_pred             hHHHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcC---CccccC
Confidence            3488889999999999999987  55 78888999999999987777777777778899999999988553   247888


Q ss_pred             CCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCc
Q 048040          126 SSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPS  170 (178)
Q Consensus       126 ~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~  170 (178)
                      ++|++|++++|.++..+. ...+..+++|++|++++|++.+.+|.
T Consensus       115 ~~L~~L~l~~N~i~~~~~-~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A          115 VNLRVLYMSNNKITNWGE-IDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             HHSSEEEESEEECCCHHH-HHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             CCCCEEECCCCcCCchhH-HHHHhcCCCCCEEEecCCcccccccc
Confidence            899999999999988753 35788899999999999988765443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.56  E-value=4.7e-14  Score=99.34  Aligned_cols=123  Identities=24%  Similarity=0.289  Sum_probs=102.2

Q ss_pred             ceeeeeeeecCC---------CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccC
Q 048040            8 CCKWRGVHCRNT---------TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLS   78 (178)
Q Consensus         8 ~c~~~~~~~~~~---------~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~   78 (178)
                      .|.+..+.|...         ...++.|++++|        .+. .+|..+..+.+|+.|++++|.++.. .+..|..++
T Consensus         9 ~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n--------~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~   78 (193)
T 2wfh_A            9 TCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGN--------QFT-LVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMT   78 (193)
T ss_dssp             EEETTEEECTTSCCSSCCSCCCTTCCEEECCSS--------CCC-SCCGGGGGCTTCCEEECCSSCCCCC-CTTTTTTCT
T ss_pred             EeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCC--------cCc-hhHHHhhcccCCCEEECCCCcCCEe-CHhHccCCC
Confidence            355666666532         256889999999        665 5678899999999999999999986 677899999


Q ss_pred             CCcEEeccCCCCCccch-hccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCc
Q 048040           79 KLRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKS  141 (178)
Q Consensus        79 ~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~  141 (178)
                      +|++|++++|.+..++. .+..+++|+.|++++|++...+. ..+..+++|+.|++++|.+...
T Consensus        79 ~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A           79 QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPE-GAFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECCSSCEECS
T ss_pred             CCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeCh-hhhhcCccccEEEeCCCCeecC
Confidence            99999999998777754 78999999999999999876553 3478899999999999998765

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.53  E-value=1.3e-14  Score=109.89  Aligned_cols=134  Identities=28%  Similarity=0.302  Sum_probs=101.1

Q ss_pred             CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCC-CCCCCCchhhhcccCCCcEEeccCC-CCCc--cch
Q 048040           20 TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNN-DFGGSPIPEFIGSLSKLRYLNLSCG-APLE--VPR   95 (178)
Q Consensus        20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~--~~~   95 (178)
                      ...++.|++++|        .+.+..+..+..+++|+.|++++| .+++..++..+..+++|++|++++| .+..  ++.
T Consensus       117 ~~~L~~L~L~~~--------~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~  188 (336)
T 2ast_B          117 CSKLQNLSLEGL--------RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV  188 (336)
T ss_dssp             BCCCSEEECTTC--------BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred             CCCCCEEeCcCc--------ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence            468999999999        677777888888889999999998 5764225666788888999999888 6664  455


Q ss_pred             hccCCC-CCcEEEeeCCc--cccCCchHHHhccCCCCEEeccCCC-CCCcccHHHHHhccCCCcEEEecCCC
Q 048040           96 TLRNFS-GLEYLNLENSH--LFSVGSLEWLSHLSSLRHLDLSYIN-LTKSRDWFQVVAKLRSLKTFVLRSCA  163 (178)
Q Consensus        96 ~~~~l~-~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~~l~~L~~l~l~~n~  163 (178)
                      .+..++ +|+.|++++|.  +.....+..+..+++|++|++++|. +++..  +..+..+++|++|++++|.
T Consensus       189 ~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~--~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          189 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC--FQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG--GGGGGGCTTCCEEECTTCT
T ss_pred             HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHH--HHHHhCCCCCCEeeCCCCC
Confidence            677788 88889888884  3323334556778888888888888 55442  2366778888888888885

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.52  E-value=1.7e-14  Score=108.52  Aligned_cols=134  Identities=18%  Similarity=0.133  Sum_probs=75.5

Q ss_pred             CCCeeEEEecCCcccccccccccccch----hhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCc---
Q 048040           20 TGHVKVLNLRTSDYEFARRKFLKGTIS----PALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLE---   92 (178)
Q Consensus        20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~----~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~---   92 (178)
                      ...++.|++++|        .+.+..+    ..+..+++|++|++++|.+... .+..+..+++|++|++++|.+..   
T Consensus       116 ~~~L~~L~Ls~n--------~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~  186 (310)
T 4glp_A          116 GLALSSLRLRNV--------SWATGRSWLAELQQWLKPGLKVLSIAQAHSPAF-SCEQVRAFPALTSLDLSDNPGLGERG  186 (310)
T ss_dssp             CBCCSSCEEESC--------CCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCC-CTTSCCCCTTCCEEECCSCTTCHHHH
T ss_pred             CCCCCEEEeecc--------cccchhhhhHHHHhhhccCCCEEEeeCCCcchh-hHHHhccCCCCCEEECCCCCCccchh
Confidence            345777778777        4444322    2334566777777777777664 45566666777777777664321   


Q ss_pred             cch--hccCCCCCcEEEeeCCccccCCch--HHHhccCCCCEEeccCCCCCCc-ccHHHHHhcc---CCCcEEEecCCCC
Q 048040           93 VPR--TLRNFSGLEYLNLENSHLFSVGSL--EWLSHLSSLRHLDLSYINLTKS-RDWFQVVAKL---RSLKTFVLRSCAL  164 (178)
Q Consensus        93 ~~~--~~~~l~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~~~l---~~L~~l~l~~n~~  164 (178)
                      ++.  .+..+++|+.|++++|++...+..  ..++.+++|++|++++|.+++. |.   .+..+   ++|++|++++|++
T Consensus       187 ~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~---~~~~~~~~~~L~~L~Ls~N~l  263 (310)
T 4glp_A          187 LMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNP---SAPRCMWSSALNSLNLSFAGL  263 (310)
T ss_dssp             HHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS---CCSSCCCCTTCCCEECCSSCC
T ss_pred             hhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchh---hHHhccCcCcCCEEECCCCCC
Confidence            211  224566666666666665332211  1235556666666666666655 32   22333   4666666666666


Q ss_pred             C
Q 048040          165 P  165 (178)
Q Consensus       165 ~  165 (178)
                      +
T Consensus       264 ~  264 (310)
T 4glp_A          264 E  264 (310)
T ss_dssp             C
T ss_pred             C
Confidence            6

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.51  E-value=3.8e-13  Score=106.39  Aligned_cols=107  Identities=25%  Similarity=0.400  Sum_probs=53.7

Q ss_pred             hhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCC
Q 048040           49 LLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSL  128 (178)
Q Consensus        49 l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  128 (178)
                      +..+++|+.|++++|.+.+.  +. +..+++|+.|++++|.+..++. +..+++|+.|++++|++.+...   +..+++|
T Consensus       239 l~~l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L  311 (466)
T 1o6v_A          239 LASLTNLTDLDLANNQISNL--AP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP---ISNLKNL  311 (466)
T ss_dssp             GGGCTTCSEEECCSSCCCCC--GG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG---GGGCTTC
T ss_pred             hhcCCCCCEEECCCCccccc--hh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh---hcCCCCC
Confidence            33444444444444444432  11 4444555555555554433333 4455555555555555433321   4555566


Q ss_pred             CEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCC
Q 048040          129 RHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPP  166 (178)
Q Consensus       129 ~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~  166 (178)
                      ++|++++|.+++.+.    +..+++|+.|++++|++.+
T Consensus       312 ~~L~L~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~  345 (466)
T 1o6v_A          312 TYLTLYFNNISDISP----VSSLTKLQRLFFYNNKVSD  345 (466)
T ss_dssp             SEEECCSSCCSCCGG----GGGCTTCCEEECCSSCCCC
T ss_pred             CEEECcCCcCCCchh----hccCccCCEeECCCCccCC
Confidence            666666666555531    4455666666666666554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.51  E-value=1e-13  Score=106.41  Aligned_cols=140  Identities=23%  Similarity=0.232  Sum_probs=68.4

Q ss_pred             CCeeEEEecCCcccccccccccccch----hhhhCCC-CCCEEEccCCCCCCCCchhhhccc-----CCCcEEeccCCCC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTIS----PALLKLH-DLRHLDLSNNDFGGSPIPEFIGSL-----SKLRYLNLSCGAP   90 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~----~~l~~l~-~L~~L~l~~n~~~~~~~~~~l~~l-----~~L~~L~l~~~~~   90 (178)
                      ..++.|++++|        .+.+..+    ..+..++ +|+.|++++|.+++. .+..+..+     ++|++|++++|.+
T Consensus        22 ~~L~~L~Ls~n--------~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~n~l   92 (362)
T 3goz_A           22 HGVTSLDLSLN--------NLYSISTVELIQAFANTPASVTSLNLSGNSLGFK-NSDELVQILAAIPANVTSLNLSGNFL   92 (362)
T ss_dssp             TTCCEEECTTS--------CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGS-CHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred             CCceEEEccCC--------CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHH-HHHHHHHHHhccCCCccEEECcCCcC
Confidence            44777777777        4444333    4455555 566666666666553 34444443     5566666666644


Q ss_pred             Cccc-h----hccCC-CCCcEEEeeCCccccCCchHH---Hhc-cCCCCEEeccCCCCCCcc--cHHHHHhccC-CCcEE
Q 048040           91 LEVP-R----TLRNF-SGLEYLNLENSHLFSVGSLEW---LSH-LSSLRHLDLSYINLTKSR--DWFQVVAKLR-SLKTF  157 (178)
Q Consensus        91 ~~~~-~----~~~~l-~~L~~L~l~~n~l~~~~~~~~---~~~-l~~L~~L~l~~n~i~~~~--~~~~~~~~l~-~L~~l  157 (178)
                      ...+ .    .+..+ ++|+.|++++|++........   +.. .++|++|++++|.+++..  .++..+..++ +|++|
T Consensus        93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L  172 (362)
T 3goz_A           93 SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL  172 (362)
T ss_dssp             GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred             ChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEe
Confidence            3221 1    13333 456666666665543332111   112 135555555555554331  1222333333 55555


Q ss_pred             EecCCCCCCCCC
Q 048040          158 VLRSCALPPINP  169 (178)
Q Consensus       158 ~l~~n~~~~~~~  169 (178)
                      ++++|.+.+..+
T Consensus       173 ~Ls~n~l~~~~~  184 (362)
T 3goz_A          173 NLRGNNLASKNC  184 (362)
T ss_dssp             ECTTSCGGGSCH
T ss_pred             eecCCCCchhhH
Confidence            555555554443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.49  E-value=1.1e-13  Score=112.19  Aligned_cols=125  Identities=26%  Similarity=0.270  Sum_probs=102.2

Q ss_pred             CeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCC
Q 048040           22 HVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFS  101 (178)
Q Consensus        22 ~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~  101 (178)
                      .++.|++++|        .+.+ +|. +..+++|+.|++++|.++.  +|..+..+++|+.|++++|.+..+| .+..++
T Consensus       442 ~L~~L~Ls~n--------~l~~-lp~-~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~  508 (567)
T 1dce_A          442 DVRVLHLAHK--------DLTV-LCH-LEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALENVD-GVANLP  508 (567)
T ss_dssp             TCSEEECTTS--------CCSS-CCC-GGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSCCCCCG-GGTTCS
T ss_pred             CceEEEecCC--------CCCC-CcC-ccccccCcEeecCcccccc--cchhhhcCCCCCEEECCCCCCCCCc-ccCCCC
Confidence            4778888888        6665 555 8889999999999999985  7889999999999999999777787 888999


Q ss_pred             CCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCccc-HHHHHhccCCCcEEEe
Q 048040          102 GLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRD-WFQVVAKLRSLKTFVL  159 (178)
Q Consensus       102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~~~l~~L~~l~l  159 (178)
                      +|+.|++++|++.+...+..++.+++|+.|++++|.+++.+. ....+..+++|+.|++
T Consensus       509 ~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          509 RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            999999999998666434568899999999999999988743 2345566888988864

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.49  E-value=3e-14  Score=110.08  Aligned_cols=40  Identities=30%  Similarity=0.472  Sum_probs=20.1

Q ss_pred             hCCCCCCEEEccCCCCCCCC---chhhhcccCCCcEEeccCCC
Q 048040           50 LKLHDLRHLDLSNNDFGGSP---IPEFIGSLSKLRYLNLSCGA   89 (178)
Q Consensus        50 ~~l~~L~~L~l~~n~~~~~~---~~~~l~~l~~L~~L~l~~~~   89 (178)
                      ..+++|+.|++++|.++...   ++..+..+++|++|++++|.
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~  133 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG  133 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence            45555555555555555410   33444455555555555553

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=6.6e-14  Score=97.00  Aligned_cols=114  Identities=18%  Similarity=0.204  Sum_probs=94.6

Q ss_pred             hhhCCCCCCEEEccCCCCCCCCchhhhcccC-CCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccC
Q 048040           48 ALLKLHDLRHLDLSNNDFGGSPIPEFIGSLS-KLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLS  126 (178)
Q Consensus        48 ~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  126 (178)
                      .+....+|+.|++++|.++.  ++. +..+. +|++|++++|.+..+ ..+..+++|+.|++++|++.+.+ +..+..++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~--i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~   88 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPV--IEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIG-EGLDQALP   88 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCS--CCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEEC-SCHHHHCT
T ss_pred             hcCCcCCceEEEeeCCCCch--hHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccC-cchhhcCC
Confidence            35678899999999999996  544 44454 999999999977766 67889999999999999986654 23358899


Q ss_pred             CCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCC
Q 048040          127 SLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPI  167 (178)
Q Consensus       127 ~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~  167 (178)
                      +|++|++++|.++..+. ...+..+++|++|++++|++...
T Consensus        89 ~L~~L~L~~N~i~~~~~-~~~l~~l~~L~~L~l~~N~i~~~  128 (176)
T 1a9n_A           89 DLTELILTNNSLVELGD-LDPLASLKSLTYLCILRNPVTNK  128 (176)
T ss_dssp             TCCEEECCSCCCCCGGG-GGGGGGCTTCCEEECCSSGGGGS
T ss_pred             CCCEEECCCCcCCcchh-hHhhhcCCCCCEEEecCCCCCCc
Confidence            99999999999988764 34678999999999999999854

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.49  E-value=9.8e-14  Score=112.37  Aligned_cols=136  Identities=20%  Similarity=0.212  Sum_probs=71.8

Q ss_pred             CCCce-----eeeee-eecCCCCCeeEEEecCCccc-------------ccccccccccchhhhhCCCCCCEEEccCCCC
Q 048040            5 KRDCC-----KWRGV-HCRNTTGHVKVLNLRTSDYE-------------FARRKFLKGTISPALLKLHDLRHLDLSNNDF   65 (178)
Q Consensus         5 ~~~~c-----~~~~~-~~~~~~~~l~~l~l~~~~~~-------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~   65 (178)
                      ..++|     .|.++ .|..  ..++.|++++|.+.             .+++|.+. .+|   ..+++|+.|++++|.+
T Consensus        39 ~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l  112 (571)
T 3cvr_A           39 QALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSSLPDNLPPQITVLEITQNALI-SLP---ELPASLEYLDACDNRL  112 (571)
T ss_dssp             TCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCC
T ss_pred             cCCccccccchhhhcccccc--CCccEEEeCCCCCCccCHhHcCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCC
Confidence            44566     67777 5643  57888888888442             11222333 223   2234455555555555


Q ss_pred             CCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHH
Q 048040           66 GGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWF  145 (178)
Q Consensus        66 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~  145 (178)
                      +.  +|. +..  +|++|++++|.+..+|.   .+++|+.|++++|++.+.+.     .+++|++|++++|.+++.+.  
T Consensus       113 ~~--ip~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~L~~lp~--  177 (571)
T 3cvr_A          113 ST--LPE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE-----LPTSLEVLSVRNNQLTFLPE--  177 (571)
T ss_dssp             SC--CCC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSCCCC--
T ss_pred             CC--cch-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCcCCC-----cCCCcCEEECCCCCCCCcch--
Confidence            44  233 322  45555555554444443   34555566666555544331     34566666666666665542  


Q ss_pred             HHHhccCCCcEEEecCCCCC
Q 048040          146 QVVAKLRSLKTFVLRSCALP  165 (178)
Q Consensus       146 ~~~~~l~~L~~l~l~~n~~~  165 (178)
                        +.  ++|+.|++++|.++
T Consensus       178 --l~--~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          178 --LP--ESLEALDVSTNLLE  193 (571)
T ss_dssp             --CC--TTCCEEECCSSCCS
T ss_pred             --hh--CCCCEEECcCCCCC
Confidence              22  56666666666666

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.48  E-value=5.4e-14  Score=113.85  Aligned_cols=109  Identities=17%  Similarity=0.141  Sum_probs=63.3

Q ss_pred             CCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCC--
Q 048040           51 KLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSL--  128 (178)
Q Consensus        51 ~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L--  128 (178)
                      .+++|+.|++++|.++.  +|.   .+++|+.|++++|.+..+|. +.  ++|+.|++++|++...+.   +..  +|  
T Consensus       138 ~l~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~---~~~--~L~~  204 (571)
T 3cvr_A          138 LPALLEYINADNNQLTM--LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA---VPV--RNHH  204 (571)
T ss_dssp             CCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC---CC-------
T ss_pred             cCccccEEeCCCCccCc--CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh---HHH--hhhc
Confidence            34455555555555554  232   34556666666665555555 33  566666666666654432   221  44  


Q ss_pred             -----CEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCcccccc
Q 048040          129 -----RHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGW  175 (178)
Q Consensus       129 -----~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l  175 (178)
                           +.|++++|.|+..|.   .+..+++|+.|++++|++++.+|..++.+
T Consensus       205 ~~~~L~~L~Ls~N~l~~lp~---~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          205 SEETEIFFRCRENRITHIPE---NILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             ---CCEEEECCSSCCCCCCG---GGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             ccccceEEecCCCcceecCH---HHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence                 777777777776653   45557777777777777777666665543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.47  E-value=7.5e-13  Score=104.70  Aligned_cols=101  Identities=20%  Similarity=0.282  Sum_probs=62.0

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNF  100 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l  100 (178)
                      ..++.|++++|        .+.+. | .+..+++|+.|++++|.+++  ++  +..+++|++|++++|.+..++  +..+
T Consensus        42 ~~L~~L~Ls~n--------~l~~~-~-~l~~l~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l  105 (457)
T 3bz5_A           42 ATLTSLDCHNS--------SITDM-T-GIEKLTGLTKLICTSNNITT--LD--LSQNTNLTYLACDSNKLTNLD--VTPL  105 (457)
T ss_dssp             TTCCEEECCSS--------CCCCC-T-TGGGCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCCC--CTTC
T ss_pred             CCCCEEEccCC--------CcccC-h-hhcccCCCCEEEccCCcCCe--Ec--cccCCCCCEEECcCCCCceee--cCCC
Confidence            56778888887        44432 3 45666677777777776666  32  556666666666666554443  5566


Q ss_pred             CCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCc
Q 048040          101 SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKS  141 (178)
Q Consensus       101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~  141 (178)
                      ++|+.|++++|++.+.+    ++.+++|++|++++|.+++.
T Consensus       106 ~~L~~L~L~~N~l~~l~----~~~l~~L~~L~l~~N~l~~l  142 (457)
T 3bz5_A          106 TKLTYLNCDTNKLTKLD----VSQNPLLTYLNCARNTLTEI  142 (457)
T ss_dssp             TTCCEEECCSSCCSCCC----CTTCTTCCEEECTTSCCSCC
T ss_pred             CcCCEEECCCCcCCeec----CCCCCcCCEEECCCCcccee
Confidence            66666666666654432    45556666666666665553

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.46  E-value=1.2e-12  Score=103.50  Aligned_cols=139  Identities=21%  Similarity=0.171  Sum_probs=84.0

Q ss_pred             CCCeeEEEecCCccc-------------ccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEecc
Q 048040           20 TGHVKVLNLRTSDYE-------------FARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLS   86 (178)
Q Consensus        20 ~~~l~~l~l~~~~~~-------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~   86 (178)
                      ...++.|++++|.+.             .++.|.+.+. +  +..+++|+.|++++|...+. +  .+..+++|+.|+++
T Consensus       105 l~~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~-~--~~~~l~~L~~L~ls  178 (457)
T 3bz5_A          105 LTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITK-L--DVTPQTQLTTLDCS  178 (457)
T ss_dssp             CTTCCEEECCSSCCSCCCCTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCC-C--CCTTCTTCCEEECC
T ss_pred             CCcCCEEECCCCcCCeecCCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCcccc-c--ccccCCcCCEEECC
Confidence            356777777777432             1122233331 1  34444455555554432221 2  24455666666666


Q ss_pred             CCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCC
Q 048040           87 CGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPP  166 (178)
Q Consensus        87 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~  166 (178)
                      +|.+..+|  +..+++|+.|++++|++.+..    ++.+++|++|++++|.+++.+     +..+++|+.|++++|++.+
T Consensus       179 ~n~l~~l~--l~~l~~L~~L~l~~N~l~~~~----l~~l~~L~~L~Ls~N~l~~ip-----~~~l~~L~~L~l~~N~l~~  247 (457)
T 3bz5_A          179 FNKITELD--VSQNKLLNRLNCDTNNITKLD----LNQNIQLTFLDCSSNKLTEID-----VTPLTQLTYFDCSVNPLTE  247 (457)
T ss_dssp             SSCCCCCC--CTTCTTCCEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCCC-----CTTCTTCSEEECCSSCCSC
T ss_pred             CCccceec--cccCCCCCEEECcCCcCCeec----cccCCCCCEEECcCCcccccC-----ccccCCCCEEEeeCCcCCC
Confidence            66555554  556677777777777765542    667778888888888887754     4677888888888888887


Q ss_pred             CCCcccccc
Q 048040          167 INPSFICGW  175 (178)
Q Consensus       167 ~~~~~~~~l  175 (178)
                      ..+..+..+
T Consensus       248 ~~~~~l~~L  256 (457)
T 3bz5_A          248 LDVSTLSKL  256 (457)
T ss_dssp             CCCTTCTTC
T ss_pred             cCHHHCCCC
Confidence            766555544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.44  E-value=5.1e-13  Score=92.16  Aligned_cols=107  Identities=19%  Similarity=0.207  Sum_probs=89.1

Q ss_pred             eeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch-hccCCC
Q 048040           23 VKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRNFS  101 (178)
Q Consensus        23 l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~  101 (178)
                      .+.++++++        .+.. +|..+  ..+|+.|++++|.++.. .+..|..+++|++|++++|.+..+|. .+..++
T Consensus        11 ~~~l~~s~n--------~l~~-ip~~~--~~~l~~L~L~~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~   78 (170)
T 3g39_A           11 GTTVDCSGK--------SLAS-VPTGI--PTTTQVLYLYDNQITKL-EPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT   78 (170)
T ss_dssp             TTEEECTTS--------CCSS-CCSCC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred             CCEEEeCCC--------CcCc-cCccC--CCCCcEEEcCCCcCCcc-ChhhhcCcccCCEEECCCCCcCccChhhccCCC
Confidence            578999999        5553 44433  37899999999999996 68889999999999999998888766 568999


Q ss_pred             CCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcc
Q 048040          102 GLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSR  142 (178)
Q Consensus       102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~  142 (178)
                      +|+.|++++|++.+.+. ..+..+++|++|++++|.++...
T Consensus        79 ~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           79 QLTQLSLNDNQLKSIPR-GAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             TCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CCCEEECCCCccCEeCH-HHhcCCCCCCEEEeCCCCCCCCc
Confidence            99999999999876553 34788999999999999998664

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.44  E-value=7.5e-13  Score=91.28  Aligned_cols=99  Identities=23%  Similarity=0.294  Sum_probs=70.9

Q ss_pred             eeeeeeeecCC---------CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCC
Q 048040            9 CKWRGVHCRNT---------TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSK   79 (178)
Q Consensus         9 c~~~~~~~~~~---------~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~   79 (178)
                      |.|+.+.|...         ...++.|++++|        .+.+..|..|..+.+|++|++++|.++.. .+..|..+++
T Consensus         9 C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N--------~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~   79 (170)
T 3g39_A            9 CSGTTVDCSGKSLASVPTGIPTTTQVLYLYDN--------QITKLEPGVFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQ   79 (170)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSS--------CCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTT
T ss_pred             cCCCEEEeCCCCcCccCccCCCCCcEEEcCCC--------cCCccChhhhcCcccCCEEECCCCCcCcc-ChhhccCCCC
Confidence            45666666532         255777888777        67766677777888888888888888774 4455677888


Q ss_pred             CcEEeccCCCCCccch-hccCCCCCcEEEeeCCccccC
Q 048040           80 LRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENSHLFSV  116 (178)
Q Consensus        80 L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~  116 (178)
                      |++|++++|.+..++. .+..+++|+.|++++|++...
T Consensus        80 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           80 LTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            8888888887666655 477788888888888876444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.44  E-value=3e-13  Score=103.38  Aligned_cols=158  Identities=16%  Similarity=0.195  Sum_probs=96.7

Q ss_pred             eeeeeeeecCC---------CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCch-hhhcccC
Q 048040            9 CKWRGVHCRNT---------TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIP-EFIGSLS   78 (178)
Q Consensus         9 c~~~~~~~~~~---------~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~l~~l~   78 (178)
                      |.+..|.|...         ...+++|++++|        .++...+..|.++++|++|++++|.+... ++ ..|..++
T Consensus         9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N--------~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~-i~~~~f~~L~   79 (350)
T 4ay9_X            9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLT--------KLRVIQKGAFSGFGDLEKIEISQNDVLEV-IEADVFSNLP   79 (350)
T ss_dssp             EETTEEEEESTTCCSCCTTCCTTCSEEEEESC--------CCSEECTTSSTTCTTCCEEEEECCTTCCE-ECTTSBCSCT
T ss_pred             eeCCEEEecCCCCCccCcCcCCCCCEEEccCC--------cCCCcCHHHHcCCCCCCEEECcCCCCCCc-cChhHhhcch
Confidence            67888888642         256899999999        66644445678888888888888887653 33 3456666


Q ss_pred             CCcEE-eccCCCCCcc-chhccCCCCCcEEEeeCCccccCCchH------------------------HHhcc-CCCCEE
Q 048040           79 KLRYL-NLSCGAPLEV-PRTLRNFSGLEYLNLENSHLFSVGSLE------------------------WLSHL-SSLRHL  131 (178)
Q Consensus        79 ~L~~L-~l~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~------------------------~~~~l-~~L~~L  131 (178)
                      .++.+ .+.+|.+..+ |..+..+++|+.|++++|++...+...                        .+..+ ..+++|
T Consensus        80 ~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L  159 (350)
T 4ay9_X           80 KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL  159 (350)
T ss_dssp             TCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEE
T ss_pred             hhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhh
Confidence            66543 3444555555 345667777777777776653221100                        01111 235556


Q ss_pred             eccCCCCCCccc---------------------H-HHHHhccCCCcEEEecCCCCCCCCCcccccc
Q 048040          132 DLSYINLTKSRD---------------------W-FQVVAKLRSLKTFVLRSCALPPINPSFICGW  175 (178)
Q Consensus       132 ~l~~n~i~~~~~---------------------~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l  175 (178)
                      ++++|.|+..+.                     + ...+.++++|++|++++|+++..++..+.++
T Consensus       160 ~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L  225 (350)
T 4ay9_X          160 WLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENL  225 (350)
T ss_dssp             ECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTC
T ss_pred             ccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccc
Confidence            666655543321                     0 2345677788888888888887666655554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.43  E-value=3.3e-13  Score=103.52  Aligned_cols=129  Identities=22%  Similarity=0.220  Sum_probs=77.2

Q ss_pred             cccccchhh----hhCC-CCCCEEEccCCCCCCCCchhhhc----c-cCCCcEEeccCCCCC-----ccchhccCCC-CC
Q 048040           40 FLKGTISPA----LLKL-HDLRHLDLSNNDFGGSPIPEFIG----S-LSKLRYLNLSCGAPL-----EVPRTLRNFS-GL  103 (178)
Q Consensus        40 ~l~~~~~~~----l~~l-~~L~~L~l~~n~~~~~~~~~~l~----~-l~~L~~L~l~~~~~~-----~~~~~~~~l~-~L  103 (178)
                      .+.+..+..    +..+ ++|+.|++++|.+++. .+..+.    . ..+|++|++++|.++     .++..+..++ +|
T Consensus        91 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L  169 (362)
T 3goz_A           91 FLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK-SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANV  169 (362)
T ss_dssp             CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS-CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH-HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccc
Confidence            555444443    3333 6777777777777664 333332    2 247777777777544     2233444554 78


Q ss_pred             cEEEeeCCccccCCch---HHHhcc-CCCCEEeccCCCCCCcc--cHHHHHhc-cCCCcEEEecCCCCCCCCC
Q 048040          104 EYLNLENSHLFSVGSL---EWLSHL-SSLRHLDLSYINLTKSR--DWFQVVAK-LRSLKTFVLRSCALPPINP  169 (178)
Q Consensus       104 ~~L~l~~n~l~~~~~~---~~~~~l-~~L~~L~l~~n~i~~~~--~~~~~~~~-l~~L~~l~l~~n~~~~~~~  169 (178)
                      +.|++++|++......   ..+..+ ++|++|++++|.+++..  .++..+.. .++|++|++++|.+.+..+
T Consensus       170 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  242 (362)
T 3goz_A          170 NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL  242 (362)
T ss_dssp             CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred             cEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence            8888888877554421   123344 47888888888877631  12345555 3588888888888877655

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.43  E-value=3e-13  Score=104.46  Aligned_cols=123  Identities=17%  Similarity=0.212  Sum_probs=85.9

Q ss_pred             hhhhCCCCCCEEEccCCCCCCCC----chhhhcccCCCcEEeccCCCC-----CccchhccCCCCCcEEEeeCCccccCC
Q 048040           47 PALLKLHDLRHLDLSNNDFGGSP----IPEFIGSLSKLRYLNLSCGAP-----LEVPRTLRNFSGLEYLNLENSHLFSVG  117 (178)
Q Consensus        47 ~~l~~l~~L~~L~l~~n~~~~~~----~~~~l~~l~~L~~L~l~~~~~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~  117 (178)
                      ..+..+++|+.|++++|.++...    .+..+..+++|+.|++++|.+     ..+|..+..+++|+.|++++|.+....
T Consensus       181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~  260 (386)
T 2ca6_A          181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG  260 (386)
T ss_dssp             HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred             HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhh
Confidence            45667788888888888887311    233667788888888888866     445667778888888888888874432


Q ss_pred             c---hHHH--hccCCCCEEeccCCCCCCc--ccHHHHH-hccCCCcEEEecCCCCCCCCC
Q 048040          118 S---LEWL--SHLSSLRHLDLSYINLTKS--RDWFQVV-AKLRSLKTFVLRSCALPPINP  169 (178)
Q Consensus       118 ~---~~~~--~~l~~L~~L~l~~n~i~~~--~~~~~~~-~~l~~L~~l~l~~n~~~~~~~  169 (178)
                      .   +..+  +.+++|++|++++|.++..  ..++..+ .++++|+.|++++|++++..+
T Consensus       261 ~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          261 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            1   2333  2378888888888888772  1123345 567888888988888887653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.41  E-value=1e-12  Score=91.03  Aligned_cols=107  Identities=21%  Similarity=0.274  Sum_probs=89.2

Q ss_pred             eeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchh-ccCCC
Q 048040           23 VKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRT-LRNFS  101 (178)
Q Consensus        23 l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~  101 (178)
                      -+.++++++        .+. .+|..+  ..+|+.|++++|.++.. .|..+..+++|++|++++|.+..+|.. +..++
T Consensus        14 ~~~l~~~~n--------~l~-~iP~~~--~~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~   81 (174)
T 2r9u_A           14 QTLVNCQNI--------RLA-SVPAGI--PTDKQRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLT   81 (174)
T ss_dssp             SSEEECCSS--------CCS-SCCSCC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             CcEEEeCCC--------CCC-ccCCCc--CCCCcEEEeCCCCcccc-CHHHhcCCcCCCEEECCCCCCCccChhHhCCcc
Confidence            367999999        553 455444  37899999999999986 688899999999999999988888764 68999


Q ss_pred             CCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcc
Q 048040          102 GLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSR  142 (178)
Q Consensus       102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~  142 (178)
                      +|+.|++++|++...+. ..+..+++|++|++++|.+...+
T Consensus        82 ~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           82 QLTQLDLNDNHLKSIPR-GAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             TCCEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCBCTTB
T ss_pred             hhhEEECCCCccceeCH-HHhccccCCCEEEeCCCCccccc
Confidence            99999999999876543 34788999999999999998765

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.41  E-value=2e-12  Score=89.51  Aligned_cols=85  Identities=19%  Similarity=0.203  Sum_probs=49.3

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchh-ccC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRT-LRN   99 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~   99 (178)
                      ..++.|++++|        .+.+..|..|..+++|+.|+|++|.++.. .+..+..+++|++|++++|.+..+|.. +..
T Consensus        33 ~~L~~L~Ls~N--------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~  103 (174)
T 2r9u_A           33 TDKQRLWLNNN--------QITKLEPGVFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLNDNHLKSIPRGAFDN  103 (174)
T ss_dssp             TTCSEEECCSS--------CCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCCcEEEeCCC--------CccccCHHHhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCCCccceeCHHHhcc
Confidence            34556666666        55555555566666666666666666653 233345666666666666655555443 555


Q ss_pred             CCCCcEEEeeCCccc
Q 048040          100 FSGLEYLNLENSHLF  114 (178)
Q Consensus       100 l~~L~~L~l~~n~l~  114 (178)
                      +++|+.|++++|++.
T Consensus       104 l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A          104 LKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CTTCSEEECCSSCBC
T ss_pred             ccCCCEEEeCCCCcc
Confidence            666666666666653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.40  E-value=3.9e-15  Score=105.12  Aligned_cols=130  Identities=24%  Similarity=0.287  Sum_probs=106.6

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNF  100 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l  100 (178)
                      ..++.|++++|        .+.+ +| .+..+++|+.|++++|.++.  +|..+..+++|++|++++|.+..+| .+..+
T Consensus        48 ~~L~~L~ls~n--------~l~~-l~-~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l  114 (198)
T 1ds9_A           48 KACKHLALSTN--------NIEK-IS-SLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIASLS-GIEKL  114 (198)
T ss_dssp             TTCSEEECSEE--------EESC-CC-CHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEECCCHH-HHHHH
T ss_pred             CCCCEEECCCC--------CCcc-cc-ccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcCCcCC-ccccC
Confidence            57889999998        6665 55 78889999999999999996  7778888899999999999777776 67888


Q ss_pred             CCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCccc-------H-HHHHhccCCCcEEEecCCCCC
Q 048040          101 SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRD-------W-FQVVAKLRSLKTFVLRSCALP  165 (178)
Q Consensus       101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-------~-~~~~~~l~~L~~l~l~~n~~~  165 (178)
                      ++|+.|++++|++...+....+..+++|++|++++|.+.+...       + ...+..+++|+.|+  ++.++
T Consensus       115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            9999999999998665544568899999999999999866521       1 23478899999987  56655

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.40  E-value=5.8e-13  Score=108.91  Aligned_cols=86  Identities=23%  Similarity=0.127  Sum_probs=52.4

Q ss_pred             CCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEE
Q 048040           78 SKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTF  157 (178)
Q Consensus        78 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l  157 (178)
                      ++|+.|++++|.+..+|   ..+++|+.|++++|++...+.     .+++|+.|++++|.++..|.   .+.++++|+.|
T Consensus       221 ~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~-----~~~~L~~L~Ls~N~L~~lp~---~l~~l~~L~~L  289 (622)
T 3g06_A          221 SGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM-----LPSGLLSLSVYRNQLTRLPE---SLIHLSSETTV  289 (622)
T ss_dssp             TTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCCSCCG---GGGGSCTTCEE
T ss_pred             CCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc-----ccccCcEEeCCCCCCCcCCH---HHhhccccCEE
Confidence            34555555555444444   234566666666666654432     45667777777777776553   56777777777


Q ss_pred             EecCCCCCCCCCccccc
Q 048040          158 VLRSCALPPINPSFICG  174 (178)
Q Consensus       158 ~l~~n~~~~~~~~~~~~  174 (178)
                      ++++|++++.+|..+..
T Consensus       290 ~L~~N~l~~~~~~~l~~  306 (622)
T 3g06_A          290 NLEGNPLSERTLQALRE  306 (622)
T ss_dssp             ECCSCCCCHHHHHHHHH
T ss_pred             EecCCCCCCcCHHHHHh
Confidence            77777777666654443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.39  E-value=2.6e-12  Score=101.53  Aligned_cols=110  Identities=20%  Similarity=0.222  Sum_probs=60.4

Q ss_pred             cccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCch
Q 048040           40 FLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSL  119 (178)
Q Consensus        40 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  119 (178)
                      .+.+ +| .+..+++|++|++++|.++.  +|..   ..+|++|++++|.+..+| .+..+++|+.|++++|++.+.+. 
T Consensus       142 ~l~~-lp-~~~~l~~L~~L~l~~N~l~~--lp~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~-  212 (454)
T 1jl5_A          142 QLEK-LP-ELQNSSFLKIIDVDNNSLKK--LPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPD-  212 (454)
T ss_dssp             CCSS-CC-CCTTCTTCCEEECCSSCCSC--CCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCC-
T ss_pred             CCCC-Cc-ccCCCCCCCEEECCCCcCcc--cCCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCC-
Confidence            4553 44 36666677777777776665  3322   235666666666555554 45666666666666666543221 


Q ss_pred             HHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCC
Q 048040          120 EWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPP  166 (178)
Q Consensus       120 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~  166 (178)
                          ..++|++|++++|.++..+    .++.+++|++|++++|++.+
T Consensus       213 ----~~~~L~~L~l~~n~l~~lp----~~~~l~~L~~L~l~~N~l~~  251 (454)
T 1jl5_A          213 ----LPLSLESIVAGNNILEELP----ELQNLPFLTTIYADNNLLKT  251 (454)
T ss_dssp             ----CCTTCCEEECCSSCCSSCC----CCTTCTTCCEEECCSSCCSS
T ss_pred             ----CcCcccEEECcCCcCCccc----ccCCCCCCCEEECCCCcCCc
Confidence                1134555555555555443    24455566666666665554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.38  E-value=7.2e-13  Score=108.35  Aligned_cols=78  Identities=24%  Similarity=0.225  Sum_probs=39.1

Q ss_pred             CCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEE
Q 048040           52 LHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHL  131 (178)
Q Consensus        52 l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  131 (178)
                      +++|++|++++|.++.  +|.   .+++|++|++++|.+..+|.   .+++|+.|++++|++...+.     .+++|++|
T Consensus        80 l~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~-----~l~~L~~L  146 (622)
T 3g06_A           80 PPELRTLEVSGNQLTS--LPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTSLPV-----LPPGLQEL  146 (622)
T ss_dssp             CTTCCEEEECSCCCSC--CCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCSCCCC-----CCTTCCEE
T ss_pred             CCCCCEEEcCCCcCCc--CCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCCcCCC-----CCCCCCEE
Confidence            4455555555555544  232   34455555555554444433   33455555555555543321     23566666


Q ss_pred             eccCCCCCCcc
Q 048040          132 DLSYINLTKSR  142 (178)
Q Consensus       132 ~l~~n~i~~~~  142 (178)
                      ++++|.+++.+
T Consensus       147 ~Ls~N~l~~l~  157 (622)
T 3g06_A          147 SVSDNQLASLP  157 (622)
T ss_dssp             ECCSSCCSCCC
T ss_pred             ECcCCcCCCcC
Confidence            66666666554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.36  E-value=1.2e-11  Score=97.70  Aligned_cols=61  Identities=23%  Similarity=0.258  Sum_probs=28.1

Q ss_pred             hhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCcccc
Q 048040           49 LLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFS  115 (178)
Q Consensus        49 l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  115 (178)
                      +..+++|+.|++++|.+++  +|..   ..+|++|++++|.+..+| .+..+++|+.|++++|++.+
T Consensus       191 ~~~l~~L~~L~l~~N~l~~--l~~~---~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~  251 (454)
T 1jl5_A          191 LQNLPFLTAIYADNNSLKK--LPDL---PLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKT  251 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSS--CCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS
T ss_pred             ccCCCCCCEEECCCCcCCc--CCCC---cCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCc
Confidence            4444555555555554443  2211   124444555444444444 24455555555555555433

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.28  E-value=4e-12  Score=100.02  Aligned_cols=121  Identities=21%  Similarity=0.180  Sum_probs=75.9

Q ss_pred             chhhhhCCCCCCEEEccCCCCCCCCchhhhccc-----CCCcEEeccCCCCCc-----cchhccCCCCCcEEEeeCCccc
Q 048040           45 ISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSL-----SKLRYLNLSCGAPLE-----VPRTLRNFSGLEYLNLENSHLF  114 (178)
Q Consensus        45 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~n~l~  114 (178)
                      ++..+..+++|+.|++++|.+++. .+..+...     +.|++|++++|.+..     ++..+..+++|+.|++++|++.
T Consensus       276 l~~~l~~~~~L~~L~Ls~n~i~~~-~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  354 (461)
T 1z7x_W          276 LCRVLRAKESLKELSLAGNELGDE-GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE  354 (461)
T ss_dssp             HHHHHHHCTTCCEEECTTCCCHHH-HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred             HHHHHhhCCCcceEECCCCCCchH-HHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc
Confidence            455566667777777777766542 23333322     467777777774443     2445566678888888888764


Q ss_pred             cCCchHHHhc-----cCCCCEEeccCCCCCCc--ccHHHHHhccCCCcEEEecCCCCCCC
Q 048040          115 SVGSLEWLSH-----LSSLRHLDLSYINLTKS--RDWFQVVAKLRSLKTFVLRSCALPPI  167 (178)
Q Consensus       115 ~~~~~~~~~~-----l~~L~~L~l~~n~i~~~--~~~~~~~~~l~~L~~l~l~~n~~~~~  167 (178)
                      +.... .+..     .++|++|++++|.+++.  ..++..+..+++|++|++++|++.+.
T Consensus       355 ~~~~~-~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          355 DAGVR-ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             HHHHH-HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             cccHH-HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence            43322 1222     56788888888887752  12345677788888888888887753

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.27  E-value=1.1e-12  Score=101.25  Aligned_cols=143  Identities=17%  Similarity=0.136  Sum_probs=97.0

Q ss_pred             CCeeEEEecCCcccccccccccccchhh-hhCCCCCCEEEccCCCCCCCCchhhhc-----ccCCCcEEeccCCCCCc--
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPA-LLKLHDLRHLDLSNNDFGGSPIPEFIG-----SLSKLRYLNLSCGAPLE--   92 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~--   92 (178)
                      ..++.|++++|        .+....... ...+.+|+.|+|++|.+++. ....+.     ..+.|++|++++|.++.  
T Consensus       101 ~~L~~L~Ls~n--------~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~-~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~  171 (372)
T 3un9_A          101 HALDEVNLASC--------QLDPAGLRTLLPVFLRARKLGLQLNSLGPE-ACKDLRDLLLHDQCQITTLRLSNNPLTAAG  171 (372)
T ss_dssp             SCEEEEECTTC--------CCCHHHHHHTHHHHHTEEEEECCSSCCCHH-HHHHHHHHHHSTTCCCCEEECCSSCCHHHH
T ss_pred             CCceEEEecCC--------CCCHHHHHHHHHHHHhccHhhcCCCCCCHH-HHHHHHHHHHhcCCccceeeCCCCCCChHH
Confidence            46677777777        454332222 22345788899999988763 333332     35779999999986653  


Q ss_pred             ---cchhccCCCCCcEEEeeCCccccCCc---hHHHhccCCCCEEeccCCCCCCcc--cHHHHHhccCCCcEEEecCCCC
Q 048040           93 ---VPRTLRNFSGLEYLNLENSHLFSVGS---LEWLSHLSSLRHLDLSYINLTKSR--DWFQVVAKLRSLKTFVLRSCAL  164 (178)
Q Consensus        93 ---~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~i~~~~--~~~~~~~~l~~L~~l~l~~n~~  164 (178)
                         ++..+...++|++|++++|.+...+.   ...+...++|++|++++|.|++..  .++..+...+.|++|++++|.+
T Consensus       172 ~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          172 VAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL  251 (372)
T ss_dssp             HHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred             HHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence               34455678889999999998754332   233566778999999999987653  3445566778999999999988


Q ss_pred             CCCCCccc
Q 048040          165 PPINPSFI  172 (178)
Q Consensus       165 ~~~~~~~~  172 (178)
                      .......+
T Consensus       252 ~~~g~~~L  259 (372)
T 3un9_A          252 SSEGRQVL  259 (372)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            75444443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.25  E-value=1.2e-11  Score=97.32  Aligned_cols=45  Identities=18%  Similarity=0.273  Sum_probs=20.2

Q ss_pred             HhccCCCCEEeccCCCCCCccc--HHHHHh-ccCCCcEEEecCCCCCC
Q 048040          122 LSHLSSLRHLDLSYINLTKSRD--WFQVVA-KLRSLKTFVLRSCALPP  166 (178)
Q Consensus       122 ~~~l~~L~~L~l~~n~i~~~~~--~~~~~~-~l~~L~~l~l~~n~~~~  166 (178)
                      +..+++|++|++++|.+++...  +...+. ..++|++|++++|.+..
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~  213 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS  213 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence            3444555555555555543310  011111 13355666666655554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.23  E-value=3.7e-11  Score=91.41  Aligned_cols=97  Identities=25%  Similarity=0.162  Sum_probs=74.1

Q ss_pred             ccccchhhhhCCCCCCEEEccC-CCCCCCCchhhhcccCCCcEEeccCCCCCccc-hhccCCCCCcEEEeeCCccccCCc
Q 048040           41 LKGTISPALLKLHDLRHLDLSN-NDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVP-RTLRNFSGLEYLNLENSHLFSVGS  118 (178)
Q Consensus        41 l~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~  118 (178)
                      +. .+|. +..+.+|+.|+|++ |.++.. .+..|..+++|+.|+|++|.+..++ ..|..+++|+.|++++|++.+.+.
T Consensus        21 l~-~ip~-l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~   97 (347)
T 2ifg_A           21 LD-SLHH-LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW   97 (347)
T ss_dssp             CT-TTTT-SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCS
T ss_pred             CC-ccCC-CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCH
Confidence            44 3666 78888899999986 888875 5577888999999999998776664 467889999999999999866542


Q ss_pred             hHHHhccCCCCEEeccCCCCCCcc
Q 048040          119 LEWLSHLSSLRHLDLSYINLTKSR  142 (178)
Q Consensus       119 ~~~~~~l~~L~~L~l~~n~i~~~~  142 (178)
                       ..+..++ |+.|++.+|.+....
T Consensus        98 -~~~~~~~-L~~l~l~~N~~~c~c  119 (347)
T 2ifg_A           98 -KTVQGLS-LQELVLSGNPLHCSC  119 (347)
T ss_dssp             -TTTCSCC-CCEEECCSSCCCCCG
T ss_pred             -HHcccCC-ceEEEeeCCCccCCC
Confidence             2234444 899999999887654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.17  E-value=1.5e-11  Score=94.79  Aligned_cols=139  Identities=18%  Similarity=0.186  Sum_probs=101.1

Q ss_pred             CCeeEEEecCCcccccccccccccchh----hhhC-CCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccc-
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISP----ALLK-LHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVP-   94 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~----~l~~-l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-   94 (178)
                      ..++.|++++|        .+......    .+.. ..+|+.|+|++|.+++.........+.+|+.|++++|.++... 
T Consensus        72 ~~L~~L~Ls~n--------~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~  143 (372)
T 3un9_A           72 SSLRQLNLAGV--------RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEAC  143 (372)
T ss_dssp             TTCCEEECTTS--------CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHH
T ss_pred             hhCCEEEecCC--------CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHH
Confidence            56899999999        55543322    2332 3699999999999986412333445678999999999765432 


Q ss_pred             hh----c-cCCCCCcEEEeeCCccccCC---chHHHhccCCCCEEeccCCCCCCcc--cHHHHHhccCCCcEEEecCCCC
Q 048040           95 RT----L-RNFSGLEYLNLENSHLFSVG---SLEWLSHLSSLRHLDLSYINLTKSR--DWFQVVAKLRSLKTFVLRSCAL  164 (178)
Q Consensus        95 ~~----~-~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~n~i~~~~--~~~~~~~~l~~L~~l~l~~n~~  164 (178)
                      ..    + ...++|+.|++++|.+....   ....+..+++|++|++++|.+++..  .+...+...+.|++|++++|.+
T Consensus       144 ~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i  223 (372)
T 3un9_A          144 KDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA  223 (372)
T ss_dssp             HHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred             HHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence            22    2 35688999999999985533   2233567889999999999997653  3355677888999999999998


Q ss_pred             CCC
Q 048040          165 PPI  167 (178)
Q Consensus       165 ~~~  167 (178)
                      +..
T Consensus       224 ~~~  226 (372)
T 3un9_A          224 GDT  226 (372)
T ss_dssp             CHH
T ss_pred             CHH
Confidence            753

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.15  E-value=1.5e-10  Score=88.43  Aligned_cols=142  Identities=20%  Similarity=0.107  Sum_probs=91.3

Q ss_pred             CCeeEEEecCCccc------------------ccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccC----
Q 048040           21 GHVKVLNLRTSDYE------------------FARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLS----   78 (178)
Q Consensus        21 ~~l~~l~l~~~~~~------------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~----   78 (178)
                      ..++.|++++|.+.                  ....|.+....|..|..+++|+.|++++|.+... .+..+....    
T Consensus        54 ~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~l~~  132 (350)
T 4ay9_X           54 GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL-PDVHKIHSLQKVL  132 (350)
T ss_dssp             TTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSC-CCCTTCCBSSCEE
T ss_pred             CCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccC-Cchhhcccchhhh
Confidence            67999999999762                  1234556655567788899999999999988753 222222222    


Q ss_pred             ----------------------CCcEEeccCCCCCccchhccCCCCCcEEEeeC-CccccCCchHHHhccCCCCEEeccC
Q 048040           79 ----------------------KLRYLNLSCGAPLEVPRTLRNFSGLEYLNLEN-SHLFSVGSLEWLSHLSSLRHLDLSY  135 (178)
Q Consensus        79 ----------------------~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~~  135 (178)
                                            .++.|++++|.+..++.......+++.+++.+ |.+...+ ...+..+++|++|++++
T Consensus       133 l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~-~~~f~~l~~L~~LdLs~  211 (350)
T 4ay9_X          133 LDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELP-NDVFHGASGPVILDISR  211 (350)
T ss_dssp             EEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCC-TTTTTTEECCSEEECTT
T ss_pred             hhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCC-HHHhccCcccchhhcCC
Confidence                                  34455555555555555444455666666654 3343333 23468889999999999


Q ss_pred             CCCCCcccHHHHHhccCCCcEEEecCCCCCCCCC
Q 048040          136 INLTKSRDWFQVVAKLRSLKTFVLRSCALPPINP  169 (178)
Q Consensus       136 n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  169 (178)
                      |.++..|.     ..+..|+.|.+.++.--+.+|
T Consensus       212 N~l~~lp~-----~~~~~L~~L~~l~~~~l~~lP  240 (350)
T 4ay9_X          212 TRIHSLPS-----YGLENLKKLRARSTYNLKKLP  240 (350)
T ss_dssp             SCCCCCCS-----SSCTTCCEEECTTCTTCCCCC
T ss_pred             CCcCccCh-----hhhccchHhhhccCCCcCcCC
Confidence            99999874     345666777766554333455

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.15  E-value=1.1e-10  Score=88.77  Aligned_cols=106  Identities=23%  Similarity=0.302  Sum_probs=85.6

Q ss_pred             ceeeeeeeecCC-----------CCCeeEEEecC-CcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhc
Q 048040            8 CCKWRGVHCRNT-----------TGHVKVLNLRT-SDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIG   75 (178)
Q Consensus         8 ~c~~~~~~~~~~-----------~~~l~~l~l~~-~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~   75 (178)
                      .|.|..+.|...           ...++.|+|++ |        .+.+..+..|.++.+|+.|+|++|.+++. .+..|.
T Consensus         7 ~C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n--------~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~   77 (347)
T 2ifg_A            7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQ--------HLQHLELRDLRGLGELRNLTIVKSGLRFV-APDAFH   77 (347)
T ss_dssp             CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCS--------SCCEECGGGSCSCCCCSEEECCSSCCCEE-CTTGGG
T ss_pred             cccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCC--------CCCCcChhHhccccCCCEEECCCCcccee-CHHHhc
Confidence            378888888764           13488999986 8        78877778899999999999999999986 677889


Q ss_pred             ccCCCcEEeccCCCCCccchh-ccCCCCCcEEEeeCCccccCCchHHHh
Q 048040           76 SLSKLRYLNLSCGAPLEVPRT-LRNFSGLEYLNLENSHLFSVGSLEWLS  123 (178)
Q Consensus        76 ~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~  123 (178)
                      .+++|+.|+|++|.+..+|.. +..+. |+.|++.+|.+.-......+.
T Consensus        78 ~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~  125 (347)
T 2ifg_A           78 FTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQ  125 (347)
T ss_dssp             SCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHH
T ss_pred             CCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHH
Confidence            999999999999988888764 44444 999999999986555444333

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.09  E-value=1.1e-10  Score=94.43  Aligned_cols=141  Identities=13%  Similarity=0.125  Sum_probs=96.7

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhC-CCCCCEEEcc----CCCCCCCC----chhhhcccCCCcEEeccCCC--
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLK-LHDLRHLDLS----NNDFGGSP----IPEFIGSLSKLRYLNLSCGA--   89 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~-l~~L~~L~l~----~n~~~~~~----~~~~l~~l~~L~~L~l~~~~--   89 (178)
                      ..++.|+++.+        .+++..+..+.. +++|+.|+++    .|.+++.+    ++..+..+++|+.|+++.|.  
T Consensus       378 ~~L~~L~l~~~--------~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~  449 (592)
T 3ogk_B          378 QELEYMAVYVS--------DITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGG  449 (592)
T ss_dssp             TTCSEEEEEES--------CCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGG
T ss_pred             ccCeEEEeecC--------CccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCC
Confidence            34555555444        566655555554 7888888886    55666521    23346678889999886542  


Q ss_pred             CC-ccchhc-cCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCC
Q 048040           90 PL-EVPRTL-RNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPI  167 (178)
Q Consensus        90 ~~-~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~  167 (178)
                      +. ..+..+ ..+++|+.|++++|++.+......+..+++|+.|++++|.+++.. ....+..+++|++|++++|+++..
T Consensus       450 l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          450 LTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERA-IAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             CCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHH-HHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             ccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHH-HHHHHHhcCccCeeECcCCcCCHH
Confidence            22 223333 347889999999999765555555688899999999999986542 244667899999999999998876


Q ss_pred             CCc
Q 048040          168 NPS  170 (178)
Q Consensus       168 ~~~  170 (178)
                      ...
T Consensus       529 ~~~  531 (592)
T 3ogk_B          529 GQD  531 (592)
T ss_dssp             CTT
T ss_pred             HHH
Confidence            443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.93  E-value=1.8e-09  Score=87.31  Aligned_cols=17  Identities=18%  Similarity=0.264  Sum_probs=7.7

Q ss_pred             hCCCCCCEEEccCCCCC
Q 048040           50 LKLHDLRHLDLSNNDFG   66 (178)
Q Consensus        50 ~~l~~L~~L~l~~n~~~   66 (178)
                      ..+++|+.|++++|.++
T Consensus       189 ~~~~~L~~L~L~~n~~~  205 (592)
T 3ogk_B          189 QHNTSLEVLNFYMTEFA  205 (592)
T ss_dssp             HHCCCCCEEECTTCCCS
T ss_pred             hcCCCccEEEeeccCCC
Confidence            33444444444444443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.93  E-value=1.2e-09  Score=82.55  Aligned_cols=94  Identities=17%  Similarity=0.229  Sum_probs=49.6

Q ss_pred             cCCCcEEeccCCCCCccch-hccCCCCCcEEEeeCCccccCCchHHHhccCCCC-EEeccCCCCCCcccHHHHHhccCCC
Q 048040           77 LSKLRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLR-HLDLSYINLTKSRDWFQVVAKLRSL  154 (178)
Q Consensus        77 l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~-~L~l~~n~i~~~~~~~~~~~~l~~L  154 (178)
                      +++|+.+++.+|.+..+|. .|..+.+|+.+.+..| +...+. ..+..+.+|+ .+++.. .++..+  ...+.++++|
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~-~aF~~~~~L~~~l~l~~-~l~~I~--~~aF~~c~~L  299 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQ-RVFSNCGRLAGTLELPA-SVTAIE--FGAFMGCDNL  299 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECT-TTTTTCTTCCEEEEECT-TCCEEC--TTTTTTCTTE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehH-HHhhCChhccEEEEEcc-cceEEc--hhhhhCCccC
Confidence            3445555555544444433 4555555555555554 333321 2255555666 666655 444443  2355666666


Q ss_pred             cEEEecCCCCCCCCCcccccc
Q 048040          155 KTFVLRSCALPPINPSFICGW  175 (178)
Q Consensus       155 ~~l~l~~n~~~~~~~~~~~~l  175 (178)
                      +.+++.+|.+..+.+.+|.++
T Consensus       300 ~~l~l~~n~i~~I~~~aF~~~  320 (329)
T 3sb4_A          300 RYVLATGDKITTLGDELFGNG  320 (329)
T ss_dssp             EEEEECSSCCCEECTTTTCTT
T ss_pred             CEEEeCCCccCccchhhhcCC
Confidence            666666666666555565554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.91  E-value=1.4e-09  Score=75.79  Aligned_cols=124  Identities=17%  Similarity=0.162  Sum_probs=88.2

Q ss_pred             cccchhhhhCCCCCCEEEccCC-CCCCCC---chhhhcccCCCcEEeccCCCCCc-----cchhccCCCCCcEEEeeCCc
Q 048040           42 KGTISPALLKLHDLRHLDLSNN-DFGGSP---IPEFIGSLSKLRYLNLSCGAPLE-----VPRTLRNFSGLEYLNLENSH  112 (178)
Q Consensus        42 ~~~~~~~l~~l~~L~~L~l~~n-~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~n~  112 (178)
                      ...+...+...+.|+.|+|++| .+.+..   +...+...+.|++|++++|.++.     +...+...+.|++|++++|.
T Consensus        25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~  104 (185)
T 1io0_A           25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF  104 (185)
T ss_dssp             HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence            3345566777888999999998 887521   34455667889999999886653     23445556789999999998


Q ss_pred             cccCCc---hHHHhccCCCCEEec--cCCCCCCcc--cHHHHHhccCCCcEEEecCCCCC
Q 048040          113 LFSVGS---LEWLSHLSSLRHLDL--SYINLTKSR--DWFQVVAKLRSLKTFVLRSCALP  165 (178)
Q Consensus       113 l~~~~~---~~~~~~l~~L~~L~l--~~n~i~~~~--~~~~~~~~l~~L~~l~l~~n~~~  165 (178)
                      +...+.   ...+...++|++|++  ++|.|.+..  .+...+...+.|++|++++|.+.
T Consensus       105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            754432   233555678999999  889887762  34556677789999999988764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.85  E-value=2.2e-09  Score=86.84  Aligned_cols=125  Identities=17%  Similarity=0.214  Sum_probs=75.8

Q ss_pred             cccccchhhhh-CCCCCCEEEcc--C----CCCCCCC----chhhhcccCCCcEEeccCCCCCccchhccC-CCCCcEEE
Q 048040           40 FLKGTISPALL-KLHDLRHLDLS--N----NDFGGSP----IPEFIGSLSKLRYLNLSCGAPLEVPRTLRN-FSGLEYLN  107 (178)
Q Consensus        40 ~l~~~~~~~l~-~l~~L~~L~l~--~----n~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-l~~L~~L~  107 (178)
                      .+++.....+. .+++|+.|+++  +    +.++..+    ++..+..+++|+.|+++++.....+..+.. +++|+.|+
T Consensus       383 ~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~  462 (594)
T 2p1m_B          383 QMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLS  462 (594)
T ss_dssp             CCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEE
T ss_pred             CcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEee
Confidence            44444334343 46777888777  3    4455321    222355667788888866322222333333 67788888


Q ss_pred             eeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCC
Q 048040          108 LENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALP  165 (178)
Q Consensus       108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~  165 (178)
                      +++|.+.+.........+++|+.|++++|.+++.. ....+..+++|+.|++++|+++
T Consensus       463 L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~-~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          463 VAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKA-LLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             EESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHH-HHHTGGGGGGSSEEEEESSCCB
T ss_pred             ccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHH-HHHHHHhCCCCCEEeeeCCCCC
Confidence            88888644433333366788888888888884432 1234456788888888888774

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.83  E-value=7.7e-09  Score=78.17  Aligned_cols=71  Identities=15%  Similarity=0.167  Sum_probs=38.6

Q ss_pred             CCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCc-EEEecCCCCCCCCCcccccc
Q 048040          100 FSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLK-TFVLRSCALPPINPSFICGW  175 (178)
Q Consensus       100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~-~l~l~~n~~~~~~~~~~~~l  175 (178)
                      +++|+.+++.+|++...+. ..+..+.+|+.+++..| ++..+  ...+.++.+|+ .+.+.+ .+..+.+.+|.++
T Consensus       225 ~~~L~~l~L~~n~i~~I~~-~aF~~~~~L~~l~l~~n-i~~I~--~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c  296 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPD-FTFAQKKYLLKIKLPHN-LKTIG--QRVFSNCGRLAGTLELPA-SVTAIEFGAFMGC  296 (329)
T ss_dssp             CTTCCEEECTTBCCCEECT-TTTTTCTTCCEEECCTT-CCEEC--TTTTTTCTTCCEEEEECT-TCCEECTTTTTTC
T ss_pred             cCCCeEEECCCCCcceecH-hhhhCCCCCCEEECCcc-cceeh--HHHhhCChhccEEEEEcc-cceEEchhhhhCC
Confidence            4556666666665544432 22555666666666665 44443  23555666666 666655 4454555555443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.73  E-value=1.2e-08  Score=82.50  Aligned_cols=63  Identities=19%  Similarity=0.172  Sum_probs=30.9

Q ss_pred             hCCCCCCEEEccCCCCCCCCchhhhc-ccCCCcEEeccCC-CCCc--cchhccCCCCCcEEEeeCCcc
Q 048040           50 LKLHDLRHLDLSNNDFGGSPIPEFIG-SLSKLRYLNLSCG-APLE--VPRTLRNFSGLEYLNLENSHL  113 (178)
Q Consensus        50 ~~l~~L~~L~l~~n~~~~~~~~~~l~-~l~~L~~L~l~~~-~~~~--~~~~~~~l~~L~~L~l~~n~l  113 (178)
                      ..+++|+.|++++|.+++. .+..+. .+++|++|++.+| .++.  ++.....+++|+.|++++|.+
T Consensus       102 ~~~~~L~~L~L~~~~~~~~-~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i  168 (594)
T 2p1m_B          102 SSYTWLEEIRLKRMVVTDD-CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDV  168 (594)
T ss_dssp             HHCTTCCEEEEESCBCCHH-HHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEE
T ss_pred             HhCCCCCeEEeeCcEEcHH-HHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCcc
Confidence            3455566666666555543 333332 4555666655555 3322  222233455555555555554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.64  E-value=6.4e-08  Score=74.28  Aligned_cols=114  Identities=23%  Similarity=0.259  Sum_probs=72.2

Q ss_pred             CCCCCEEEccCCCCCCCCchhhhc--ccCCCcEEeccCC---CCC-----ccchhc--cCCCCCcEEEeeCCccccCCch
Q 048040           52 LHDLRHLDLSNNDFGGSPIPEFIG--SLSKLRYLNLSCG---APL-----EVPRTL--RNFSGLEYLNLENSHLFSVGSL  119 (178)
Q Consensus        52 l~~L~~L~l~~n~~~~~~~~~~l~--~l~~L~~L~l~~~---~~~-----~~~~~~--~~l~~L~~L~l~~n~l~~~~~~  119 (178)
                      +.+|+.|++..+.++.. ....+.  .+++|+.|+|+.+   ..+     .+...+  ..+++|+.|.+.+|.+.... .
T Consensus       192 ~~~L~~L~L~~~~l~~~-~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~-~  269 (362)
T 2ra8_A          192 RPNLKSLEIISGGLPDS-VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVV-V  269 (362)
T ss_dssp             CTTCSEEEEECSBCCHH-HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHH-H
T ss_pred             CCCCcEEEEecCCCChH-HHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHH-H
Confidence            56777777777766542 233343  6788888887531   111     111222  24788999999988874322 1


Q ss_pred             HHH---hccCCCCEEeccCCCCCCcc--cHHHHHhccCCCcEEEecCCCCCCC
Q 048040          120 EWL---SHLSSLRHLDLSYINLTKSR--DWFQVVAKLRSLKTFVLRSCALPPI  167 (178)
Q Consensus       120 ~~~---~~l~~L~~L~l~~n~i~~~~--~~~~~~~~l~~L~~l~l~~n~~~~~  167 (178)
                      ..+   ..+++|++|+++.|.+.+..  .+...+..+++|+.|+++.|.+...
T Consensus       270 ~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~  322 (362)
T 2ra8_A          270 EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE  322 (362)
T ss_dssp             HHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred             HHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence            222   34778999999999887752  1222335678999999998887643

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.64  E-value=3.4e-08  Score=68.78  Aligned_cols=120  Identities=13%  Similarity=0.128  Sum_probs=87.8

Q ss_pred             CCCCeeEEEecCC-cccccccccccccchhhhhCCCCCCEEEccCCCCCCCC---chhhhcccCCCcEEeccCCCCCc--
Q 048040           19 TTGHVKVLNLRTS-DYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSP---IPEFIGSLSKLRYLNLSCGAPLE--   92 (178)
Q Consensus        19 ~~~~l~~l~l~~~-~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~--   92 (178)
                      ....+++|++++| .+..-.   . ..+...+...++|++|+|++|.+.+..   +...+...+.|++|++++|.++.  
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g---~-~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPT---L-KACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHH---H-HHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             cCCCCCEEEecCCCCCCHHH---H-HHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            4578999999998 552111   1 134456777899999999999998631   34456667899999999997664  


Q ss_pred             ---cchhccCCCCCcEEEe--eCCccccCC---chHHHhccCCCCEEeccCCCCCCcc
Q 048040           93 ---VPRTLRNFSGLEYLNL--ENSHLFSVG---SLEWLSHLSSLRHLDLSYINLTKSR  142 (178)
Q Consensus        93 ---~~~~~~~l~~L~~L~l--~~n~l~~~~---~~~~~~~l~~L~~L~l~~n~i~~~~  142 (178)
                         +...+...+.|+.|++  ++|.+....   ....+...++|++|++++|.+....
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~  167 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL  167 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence               3456677789999999  889985443   2234566689999999999986553

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.61  E-value=3.8e-09  Score=77.71  Aligned_cols=83  Identities=23%  Similarity=0.239  Sum_probs=57.8

Q ss_pred             cccCCCcEEeccCCCCCcc---chhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCc-c---c-HHH
Q 048040           75 GSLSKLRYLNLSCGAPLEV---PRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKS-R---D-WFQ  146 (178)
Q Consensus        75 ~~l~~L~~L~l~~~~~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~-~---~-~~~  146 (178)
                      ..++.|+.|++++|.+..+   |..+..+++|+.|++++|++.+......+..+ +|++|++++|.+.+. +   . ...
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence            4577888888888866554   34556788888888888888665333334434 888899998888752 1   1 124


Q ss_pred             HHhccCCCcEEE
Q 048040          147 VVAKLRSLKTFV  158 (178)
Q Consensus       147 ~~~~l~~L~~l~  158 (178)
                      .+..+++|+.|+
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            567888888876

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.47  E-value=2e-07  Score=64.17  Aligned_cols=101  Identities=15%  Similarity=0.141  Sum_probs=61.1

Q ss_pred             CCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCC-CCCcc-chhccCC----CCCcEEEeeCCc-cccCCchHHHhcc
Q 048040           53 HDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCG-APLEV-PRTLRNF----SGLEYLNLENSH-LFSVGSLEWLSHL  125 (178)
Q Consensus        53 ~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~-~~~~~~l----~~L~~L~l~~n~-l~~~~~~~~~~~l  125 (178)
                      -+|+.|+++++.+++. ....+..+++|++|++++| .++.. -..+..+    ++|+.|++++|. ++..+ ...+..+
T Consensus        61 ~~L~~LDLs~~~Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G-l~~L~~~  138 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG-IIALHHF  138 (176)
T ss_dssp             CCEEEEEEESCCCCGG-GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH-HHHGGGC
T ss_pred             ceEeEEeCcCCCccHH-HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH-HHHHhcC
Confidence            3677778888777764 4455677777888887777 44432 2234443    357788888776 43333 3446677


Q ss_pred             CCCCEEeccCCC-CCCcccHHH-HHhccCCCc
Q 048040          126 SSLRHLDLSYIN-LTKSRDWFQ-VVAKLRSLK  155 (178)
Q Consensus       126 ~~L~~L~l~~n~-i~~~~~~~~-~~~~l~~L~  155 (178)
                      ++|++|+++++. +++...... .-..+|.++
T Consensus       139 ~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~  170 (176)
T 3e4g_A          139 RNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE  170 (176)
T ss_dssp             TTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred             CCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence            788888888775 555421112 223556654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.36  E-value=3.6e-07  Score=67.14  Aligned_cols=84  Identities=23%  Similarity=0.229  Sum_probs=63.9

Q ss_pred             hhCCCCCCEEEccCCCCCCCC-chhhhcccCCCcEEeccCCCCCccc--hhccCCCCCcEEEeeCCccccC-C-----ch
Q 048040           49 LLKLHDLRHLDLSNNDFGGSP-IPEFIGSLSKLRYLNLSCGAPLEVP--RTLRNFSGLEYLNLENSHLFSV-G-----SL  119 (178)
Q Consensus        49 l~~l~~L~~L~l~~n~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~-~-----~~  119 (178)
                      ...+++|+.|+|++|.+++.+ ++..+..+++|+.|+|++|.+..+.  ..+..+ +|+.|++.+|.+.+. +     ..
T Consensus       166 ~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          166 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             HhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHH
Confidence            356889999999999999831 4567789999999999999776652  234444 899999999998542 1     12


Q ss_pred             HHHhccCCCCEEec
Q 048040          120 EWLSHLSSLRHLDL  133 (178)
Q Consensus       120 ~~~~~l~~L~~L~l  133 (178)
                      ..+..+++|+.||-
T Consensus       245 ~il~~~P~L~~LDg  258 (267)
T 3rw6_A          245 AIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHCTTCCEESS
T ss_pred             HHHHHCcccCeECC
Confidence            34788999998863

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.36  E-value=6.8e-07  Score=61.55  Aligned_cols=85  Identities=19%  Similarity=0.283  Sum_probs=66.2

Q ss_pred             cCCCcEEeccCCCCCcc-chhccCCCCCcEEEeeCCccccCCchHHHhcc----CCCCEEeccCCC-CCCcccHHHHHhc
Q 048040           77 LSKLRYLNLSCGAPLEV-PRTLRNFSGLEYLNLENSHLFSVGSLEWLSHL----SSLRHLDLSYIN-LTKSRDWFQVVAK  150 (178)
Q Consensus        77 l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l----~~L~~L~l~~n~-i~~~~~~~~~~~~  150 (178)
                      -..|+.|++++|.+... -..+..+++|+.|++++|...+......+..+    ++|++|+++++. |++..  ...++.
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G--l~~L~~  137 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG--IIALHH  137 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH--HHHGGG
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH--HHHHhc
Confidence            35799999999965443 34678999999999999974344444556654    479999999985 87764  457889


Q ss_pred             cCCCcEEEecCCC
Q 048040          151 LRSLKTFVLRSCA  163 (178)
Q Consensus       151 l~~L~~l~l~~n~  163 (178)
                      +++|+.|+++++.
T Consensus       138 ~~~L~~L~L~~c~  150 (176)
T 3e4g_A          138 FRNLKYLFLSDLP  150 (176)
T ss_dssp             CTTCCEEEEESCT
T ss_pred             CCCCCEEECCCCC
Confidence            9999999999985

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.23  E-value=4.1e-06  Score=64.25  Aligned_cols=141  Identities=17%  Similarity=0.200  Sum_probs=87.5

Q ss_pred             CCeeEEEecCCcccccccccc-cccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCcc-chhc-
Q 048040           21 GHVKVLNLRTSDYEFARRKFL-KGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV-PRTL-   97 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l-~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~-   97 (178)
                      .+++.|.+...........-+ .+.+...+..+++|+.|.+++|.-..  ++. + .+++|+.|++..+.+..- ...+ 
T Consensus       139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~--l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~  214 (362)
T 2ra8_A          139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS--IGK-K-PRPNLKSLEIISGGLPDSVVEDIL  214 (362)
T ss_dssp             TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB--CCS-C-BCTTCSEEEEECSBCCHHHHHHHH
T ss_pred             chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce--ecc-c-cCCCCcEEEEecCCCChHHHHHHH
Confidence            578888876653211000001 23466677888999999998873211  333 3 378899999987754322 2233 


Q ss_pred             -cCCCCCcEEEeeCC--ccccCCch----HHH--hccCCCCEEeccCCCCCCcccHHHHH---hccCCCcEEEecCCCCC
Q 048040           98 -RNFSGLEYLNLENS--HLFSVGSL----EWL--SHLSSLRHLDLSYINLTKSRDWFQVV---AKLRSLKTFVLRSCALP  165 (178)
Q Consensus        98 -~~l~~L~~L~l~~n--~l~~~~~~----~~~--~~l~~L~~L~l~~n~i~~~~~~~~~~---~~l~~L~~l~l~~n~~~  165 (178)
                       ..+++|+.|++..+  ...+....    ..+  +.+++|++|++++|.+.+..  ...+   ..+++|++|+++.|.+.
T Consensus       215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~--~~~la~a~~~~~L~~LdLs~n~L~  292 (362)
T 2ra8_A          215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVV--VEMFLESDILPQLETMDISAGVLT  292 (362)
T ss_dssp             HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHH--HHHHHHCSSGGGCSEEECCSSCCB
T ss_pred             HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHH--HHHHHhCccCCCCCEEECCCCCCC
Confidence             37899999998632  21111101    112  35789999999999987642  1233   35789999999999887


Q ss_pred             CC
Q 048040          166 PI  167 (178)
Q Consensus       166 ~~  167 (178)
                      ..
T Consensus       293 d~  294 (362)
T 2ra8_A          293 DE  294 (362)
T ss_dssp             HH
T ss_pred             hH
Confidence            63

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.23  E-value=2.8e-06  Score=66.00  Aligned_cols=116  Identities=12%  Similarity=0.152  Sum_probs=73.4

Q ss_pred             CCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCC-----cc-chhccCCCCCcEEEeeCCccccCCchHHHhccC
Q 048040           53 HDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPL-----EV-PRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLS  126 (178)
Q Consensus        53 ~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  126 (178)
                      .+|+.+.+ .+.++.. ....|..+.+|+.+.+.++...     .+ +..|..+++|+.+.+.. .+...+. ..+..+.
T Consensus       248 ~~L~~i~l-p~~i~~I-~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~-~aF~~c~  323 (401)
T 4fdw_A          248 SGITTVKL-PNGVTNI-ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQ-GLLGGNR  323 (401)
T ss_dssp             CCCSEEEE-ETTCCEE-CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECT-TTTTTCC
T ss_pred             CCccEEEe-CCCccEE-ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhh-hhhcCCC
Confidence            45666665 2334442 3456777777888877766433     23 34677777888888773 3444432 3367778


Q ss_pred             CCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCccccccc
Q 048040          127 SLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGWE  176 (178)
Q Consensus       127 ~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~  176 (178)
                      +|+.+.+..+ ++...  ...+.++ +|+.+.+.+|.+....+..|.+++
T Consensus       324 ~L~~l~lp~~-l~~I~--~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~  369 (401)
T 4fdw_A          324 KVTQLTIPAN-VTQIN--FSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFP  369 (401)
T ss_dssp             SCCEEEECTT-CCEEC--TTSSSSS-CCCEEEECCSSCCBCCCSSCCCSC
T ss_pred             CccEEEECcc-ccEEc--HHhCCCC-CCCEEEEcCCCCcccccccccCCC
Confidence            8888888554 55443  2356677 888888888877776666666553

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.20  E-value=6.8e-06  Score=63.83  Aligned_cols=147  Identities=15%  Similarity=0.126  Sum_probs=87.7

Q ss_pred             CCCeeEEEecCCcccccccccc--------------cccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEec
Q 048040           20 TGHVKVLNLRTSDYEFARRKFL--------------KGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNL   85 (178)
Q Consensus        20 ~~~l~~l~l~~~~~~~~~~~~l--------------~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l   85 (178)
                      +..++.++++++.+..+....|              ...-...|.++.+|+.+.+..+ ++.. ....|.. ..|+.+.+
T Consensus       179 c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~-l~~I-~~~aF~~-~~L~~i~l  255 (401)
T 4fdw_A          179 CYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN-VSTI-GQEAFRE-SGITTVKL  255 (401)
T ss_dssp             CTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT-CCEE-CTTTTTT-CCCSEEEE
T ss_pred             cccCCeeecCCCcceEechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCCC-ccCc-ccccccc-CCccEEEe
Confidence            3567788887775543322221              1112234555666666666553 3332 2333444 56666666


Q ss_pred             cCCCCCcc-chhccCCCCCcEEEeeCCccc-----cCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEe
Q 048040           86 SCGAPLEV-PRTLRNFSGLEYLNLENSHLF-----SVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVL  159 (178)
Q Consensus        86 ~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l  159 (178)
                      ..+ +..+ ...|..+++|+.+.+.++.+.     ..+ ...+..+++|+.+.+. +.++..+  ...+.++.+|+.+.+
T Consensus       256 p~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~-~~aF~~c~~L~~l~l~-~~i~~I~--~~aF~~c~~L~~l~l  330 (401)
T 4fdw_A          256 PNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIH-PYCLEGCPKLARFEIP-ESIRILG--QGLLGGNRKVTQLTI  330 (401)
T ss_dssp             ETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEEC-TTTTTTCTTCCEECCC-TTCCEEC--TTTTTTCCSCCEEEE
T ss_pred             CCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEEC-HHHhhCCccCCeEEeC-CceEEEh--hhhhcCCCCccEEEE
Confidence            433 3334 346778888999888877653     122 2347788889999888 4466664  247788889999998


Q ss_pred             cCCCCCCCCCcccccc
Q 048040          160 RSCALPPINPSFICGW  175 (178)
Q Consensus       160 ~~n~~~~~~~~~~~~l  175 (178)
                      ..+ ++.+...+|.++
T Consensus       331 p~~-l~~I~~~aF~~~  345 (401)
T 4fdw_A          331 PAN-VTQINFSAFNNT  345 (401)
T ss_dssp             CTT-CCEECTTSSSSS
T ss_pred             Ccc-ccEEcHHhCCCC
Confidence            655 565666666654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.70  E-value=7.4e-05  Score=52.27  Aligned_cols=120  Identities=14%  Similarity=0.087  Sum_probs=74.3

Q ss_pred             cchhhhhCCCCCCEEEccCC-CCCCC---CchhhhcccCCCcEEeccCCCCCcc-----chhccCCCCCcEEEeeCCccc
Q 048040           44 TISPALLKLHDLRHLDLSNN-DFGGS---PIPEFIGSLSKLRYLNLSCGAPLEV-----PRTLRNFSGLEYLNLENSHLF  114 (178)
Q Consensus        44 ~~~~~l~~l~~L~~L~l~~n-~~~~~---~~~~~l~~l~~L~~L~l~~~~~~~~-----~~~~~~l~~L~~L~l~~n~l~  114 (178)
                      .+...+..-..|+.|+|++| .+.+.   .+...+..-+.|+.|+|++|.++..     .+.+..=..|++|++++|.+.
T Consensus        32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            34445566778888888875 66542   0344555667788888888866532     233334467888888888874


Q ss_pred             cCCchHH---HhccCCCCEEeccCC---CCCCc--ccHHHHHhccCCCcEEEecCCC
Q 048040          115 SVGSLEW---LSHLSSLRHLDLSYI---NLTKS--RDWFQVVAKLRSLKTFVLRSCA  163 (178)
Q Consensus       115 ~~~~~~~---~~~l~~L~~L~l~~n---~i~~~--~~~~~~~~~l~~L~~l~l~~n~  163 (178)
                      ..+....   +..-+.|++|++++|   .+...  ..+...+..-+.|+.|+++.|.
T Consensus       112 ~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          112 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            4433222   233346888888765   33332  2345566777888888887654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.18  E-value=0.0011  Score=50.60  Aligned_cols=119  Identities=16%  Similarity=0.184  Sum_probs=72.8

Q ss_pred             hhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccc-hhccCCCCCcEEEeeCCccccCCchHHHhccC
Q 048040           48 ALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVP-RTLRNFSGLEYLNLENSHLFSVGSLEWLSHLS  126 (178)
Q Consensus        48 ~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  126 (178)
                      .+.+...|+.+.+..+ ++.. ....+.....|+.+.+..+ +..++ ..+..+.+|+.+.+..+.+...+. ..+..+.
T Consensus       235 ~f~~~~~L~~i~lp~~-v~~I-~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~-~aF~~c~  310 (379)
T 4h09_A          235 AFYGMKALDEIAIPKN-VTSI-GSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEP-RVFMDCV  310 (379)
T ss_dssp             TTTTCSSCCEEEECTT-CCEE-CTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECT-TTTTTCT
T ss_pred             cccCCccceEEEcCCC-ccEe-Cccccceeehhcccccccc-ceeccccccccccccccccccccccceehh-hhhcCCC
Confidence            4556667777777654 3332 3445666777777777554 33333 366777888888887776644432 3367778


Q ss_pred             CCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCccccc
Q 048040          127 SLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICG  174 (178)
Q Consensus       127 ~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~  174 (178)
                      +|+.+.+..+ ++....  ..+.++.+|+.+.+..+ ++.+...+|.+
T Consensus       311 ~L~~i~lp~~-l~~I~~--~aF~~C~~L~~i~ip~~-v~~I~~~aF~~  354 (379)
T 4h09_A          311 KLSSVTLPTA-LKTIQV--YAFKNCKALSTISYPKS-ITLIESGAFEG  354 (379)
T ss_dssp             TCCEEECCTT-CCEECT--TTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred             CCCEEEcCcc-ccEEHH--HHhhCCCCCCEEEECCc-cCEEchhHhhC
Confidence            8888888654 444432  36677778887777544 44444455544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.07  E-value=0.0022  Score=44.74  Aligned_cols=92  Identities=16%  Similarity=0.128  Sum_probs=67.1

Q ss_pred             hhhcccCCCcEEeccCC-CCCc-----cchhccCCCCCcEEEeeCCccccCC---chHHHhccCCCCEEeccCCCCCCcc
Q 048040           72 EFIGSLSKLRYLNLSCG-APLE-----VPRTLRNFSGLEYLNLENSHLFSVG---SLEWLSHLSSLRHLDLSYINLTKSR  142 (178)
Q Consensus        72 ~~l~~l~~L~~L~l~~~-~~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~n~i~~~~  142 (178)
                      ..+..-+.|+.|+++++ .++.     +.+.+..-..|+.|++++|++....   ....+..-+.|++|+|+.|.|.+..
T Consensus        35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G  114 (197)
T 1pgv_A           35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL  114 (197)
T ss_dssp             HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred             HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence            33445678999999985 6653     2345666678999999999984332   2233555678999999999998773


Q ss_pred             --cHHHHHhccCCCcEEEecCCC
Q 048040          143 --DWFQVVAKLRSLKTFVLRSCA  163 (178)
Q Consensus       143 --~~~~~~~~l~~L~~l~l~~n~  163 (178)
                        .+...+...+.|++|++++|.
T Consensus       115 a~ala~aL~~N~tL~~L~L~n~~  137 (197)
T 1pgv_A          115 LARLLRSTLVTQSIVEFKADNQR  137 (197)
T ss_dssp             HHHHHHHTTTTCCCSEEECCCCS
T ss_pred             HHHHHHHHhhCCceeEEECCCCc
Confidence              345566677789999998653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.95  E-value=0.0012  Score=42.86  Aligned_cols=58  Identities=16%  Similarity=0.145  Sum_probs=44.7

Q ss_pred             cEEeccCCCCC--ccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCc
Q 048040           81 RYLNLSCGAPL--EVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKS  141 (178)
Q Consensus        81 ~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~  141 (178)
                      ..++.+++.+.  .+|..+.  .+++.|++++|++..++. ..+..+++|+.|+|.+|.+.-.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~NP~~Cd   70 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPP-GLLDALPALRTAHLGANPWRCD   70 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCT-TTGGGCTTCCEEECCSSCCBCS
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccCh-hhhhhccccCEEEecCCCeecc
Confidence            36777777666  7776432  469999999999977653 4478889999999999998754

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.58  E-value=0.0052  Score=47.22  Aligned_cols=61  Identities=13%  Similarity=0.221  Sum_probs=24.2

Q ss_pred             hhcccCCCcEEeccCCCCCccc-hhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCC
Q 048040           73 FIGSLSKLRYLNLSCGAPLEVP-RTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYI  136 (178)
Q Consensus        73 ~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  136 (178)
                      .|..+.+|+.+.+..+ +..+. .+|..+.+|+.+.+..+ ++..+. ..+..+.+|+.+++.++
T Consensus       306 aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~-~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          306 VFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPE-SAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCG-GGGTTCTTCCEEEESSC
T ss_pred             eecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhH-hHhhCCCCCCEEEECCc
Confidence            3444444444444332 22221 23444444554444322 222221 22444444555444443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.52  E-value=0.011  Score=45.43  Aligned_cols=109  Identities=10%  Similarity=0.122  Sum_probs=77.5

Q ss_pred             hhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch-hccCCCCCcEEEeeCCccccCCchHHHhcc
Q 048040           47 PALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENSHLFSVGSLEWLSHL  125 (178)
Q Consensus        47 ~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l  125 (178)
                      .+|.+...|+.+.+..+...-  ....|..+..|+.+.+... +..++. .|..+.+|+.+.+..+ ++..+. ..+..+
T Consensus       259 ~aF~~c~~L~~i~lp~~~~~I--~~~aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~-~aF~~C  333 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSVVSI--GTGAFMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-ITQILD-DAFAGC  333 (394)
T ss_dssp             TTTTTCSSCCEEECCTTCCEE--CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECT-TTTTTC
T ss_pred             ceeeecccccEEeccccccee--cCcccccccccccccCCCc-ccccCceeecCCCCcCEEEeCCc-ccEehH-hHhhCC
Confidence            356777888888886654432  3456778888999988643 444544 7888999999999764 333332 347888


Q ss_pred             CCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCC
Q 048040          126 SSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCA  163 (178)
Q Consensus       126 ~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~  163 (178)
                      .+|+.+.+..+ ++....  ..+.++.+|+.+.+.++.
T Consensus       334 ~~L~~i~ip~s-v~~I~~--~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          334 EQLERIAIPSS-VTKIPE--SAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             TTCCEEEECTT-CCBCCG--GGGTTCTTCCEEEESSCH
T ss_pred             CCCCEEEECcc-cCEEhH--hHhhCCCCCCEEEECCce
Confidence            99999999754 555542  478899999999998764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.38  E-value=0.0068  Score=39.29  Aligned_cols=56  Identities=20%  Similarity=0.268  Sum_probs=37.8

Q ss_pred             eEEEecCCccccccccccc-ccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCC
Q 048040           24 KVLNLRTSDYEFARRKFLK-GTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAP   90 (178)
Q Consensus        24 ~~l~l~~~~~~~~~~~~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~   90 (178)
                      ..++.+++        .++ ..+|..+  ..+|+.|+|++|.|+.. .+..|..+++|+.|+|.+|.+
T Consensus        11 ~~v~Cs~~--------~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           11 TLVDCGRR--------GLTWASLPTAF--PVDTTELVLTGNNLTAL-PPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TEEECCSS--------CCCTTTSCSCC--CTTCSEEECTTSCCSSC-CTTTGGGCTTCCEEECCSSCC
T ss_pred             CEEEeCCC--------CCccccCCCCC--CcCCCEEECCCCcCCcc-ChhhhhhccccCEEEecCCCe
Confidence            36777777        444 2344322  23678888888888875 456677788888888888744

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.99  E-value=0.017  Score=44.34  Aligned_cols=104  Identities=13%  Similarity=0.090  Sum_probs=61.5

Q ss_pred             hhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccc-hhccCCCCCcEEEeeCCccccCCchHHHhccCC
Q 048040           49 LLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVP-RTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSS  127 (178)
Q Consensus        49 l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  127 (178)
                      +.....++.+......+.    ...+..+.+|+.+.+..+ +..++ .+|..+.+|+.+.+..+ +...+. ..+..+.+
T Consensus       272 F~~~~~l~~~~~~~~~i~----~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~-~aF~~c~~  344 (394)
T 4fs7_A          272 FYNCSGLKKVIYGSVIVP----EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGK-RSFRGCTS  344 (394)
T ss_dssp             TTTCTTCCEEEECSSEEC----TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT-TTTTTCTT
T ss_pred             cccccccceeccCceeec----cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhH-HhccCCCC
Confidence            344444444444433322    224556667777777554 33333 36777788888887643 333332 33677788


Q ss_pred             CCEEeccCCCCCCcccHHHHHhccCCCcEEEecCC
Q 048040          128 LRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSC  162 (178)
Q Consensus       128 L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n  162 (178)
                      |+.+.+..+ ++..+  ...+.++.+|+.+.+..+
T Consensus       345 L~~i~lp~~-l~~I~--~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          345 LSNINFPLS-LRKIG--ANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             CCEECCCTT-CCEEC--TTTBTTCTTCCEEEEEGG
T ss_pred             CCEEEECcc-ccEeh--HHHhhCCCCCCEEEECCC
Confidence            888888765 55543  236777888888887654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.96  E-value=0.015  Score=44.56  Aligned_cols=37  Identities=11%  Similarity=0.008  Sum_probs=18.2

Q ss_pred             hhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEec
Q 048040           47 PALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNL   85 (178)
Q Consensus        47 ~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l   85 (178)
                      .+|.+..+|+.+.+..+ ++.. ....|..+..|+.+.+
T Consensus        88 ~aF~~c~~L~~i~lp~~-l~~I-~~~aF~~c~~L~~i~~  124 (394)
T 4fs7_A           88 FAFENCSKLEIINIPDS-VKMI-GRCTFSGCYALKSILL  124 (394)
T ss_dssp             TTTTTCTTCCEECCCTT-CCEE-CTTTTTTCTTCCCCCC
T ss_pred             hHhhCCCCCcEEEeCCC-ceEc-cchhhcccccchhhcc
Confidence            34566666776666543 3322 2334444445544433

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.91  E-value=0.033  Score=42.36  Aligned_cols=120  Identities=13%  Similarity=0.096  Sum_probs=79.9

Q ss_pred             hhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCcc-chhccCCCCCcEEEeeCCccccCCchHHHhccC
Q 048040           48 ALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV-PRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLS  126 (178)
Q Consensus        48 ~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  126 (178)
                      .+.....|+.+.+..+ +... ....+.....|+.+.+..+ +..+ ...+..+..|+.+.+..+ +...+. ..+..+.
T Consensus       212 ~f~~~~~l~~i~~~~~-~~~i-~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~-~aF~~c~  286 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-VTTL-GDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPY-LLCSGCS  286 (379)
T ss_dssp             TTTTCSSCSEEECCTT-CCEE-CTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECT-TTTTTCT
T ss_pred             ccccccccceeeeccc-eeEE-ccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccc-ccccccc
Confidence            3445566666666543 2222 3455667788888888665 3333 346778888999988654 333332 3378889


Q ss_pred             CCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCcccccc
Q 048040          127 SLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGW  175 (178)
Q Consensus       127 ~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l  175 (178)
                      +|+.+.+..+.++..+.  ..+.++.+|+.+.+.++ ++.+...+|.++
T Consensus       287 ~L~~i~l~~~~i~~I~~--~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C  332 (379)
T 4h09_A          287 NLTKVVMDNSAIETLEP--RVFMDCVKLSSVTLPTA-LKTIQVYAFKNC  332 (379)
T ss_dssp             TCCEEEECCTTCCEECT--TTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred             ccccccccccccceehh--hhhcCCCCCCEEEcCcc-ccEEHHHHhhCC
Confidence            99999999988877753  47888999999999755 555555666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	178
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	8e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.2 bits (121), Expect = 1e-08
 Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 7/84 (8%)

Query: 52  LHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENS 111
           L +L +L L  N+         + SL+KL+ L  +    +    +L N + + +L+  ++
Sbjct: 306 LKNLTYLTLYFNNISDIS---PVSSLTKLQRLFFA-NNKVSDVSSLANLTNINWLSAGHN 361

Query: 112 HLFSVGSLEWLSHLSSLRHLDLSY 135
            +     L  L++L+ +  L L+ 
Sbjct: 362 QI---SDLTPLANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 1e-04
 Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 27/136 (19%)

Query: 47  PALLKLHDLRHLDLSNNDFGGSP-------------------IPEFIGSLSKLRYLNLSC 87
             L  L  L  L L  N                             I +L  L YL L  
Sbjct: 257 APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF 316

Query: 88  GAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQV 147
              +     + + + L+ L   N+ +     +  L++L+++  L   +  ++        
Sbjct: 317 N-NISDISPVSSLTKLQRLFFANNKV---SDVSSLANLTNINWLSAGHNQISDLTP---- 368

Query: 148 VAKLRSLKTFVLRSCA 163
           +A L  +    L   A
Sbjct: 369 LANLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 7e-04
 Identities = 24/139 (17%), Positives = 44/139 (31%), Gaps = 31/139 (22%)

Query: 47  PALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVP------------ 94
             L  L +L  LDL+NN          +  L+KL  L L       +             
Sbjct: 235 GTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNISPLAGLTALTNLE 291

Query: 95  ---------RTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWF 145
                      + N   L YL L  +++     +  +S L+ L+ L  +   ++      
Sbjct: 292 LNENQLEDISPISNLKNLTYLTLYFNNI---SDISPVSSLTKLQRLFFANNKVSD----V 344

Query: 146 QVVAKLRSLKTFVLRSCAL 164
             +A L ++         +
Sbjct: 345 SSLANLTNINWLSAGHNQI 363

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.8 bits (113), Expect = 3e-08
 Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 4/116 (3%)

Query: 44  TISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGL 103
           T+   L +L  + HLDLS+N      +P  + +L  L  L  S  A   V   + N   L
Sbjct: 11  TVLCHLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALENVD-GVANLPRL 67

Query: 104 EYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWF-QVVAKLRSLKTFV 158
           + L L N+ L    +++ L     L  L+L   +L +      ++   L S+ + +
Sbjct: 68  QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 123

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 4e-07
 Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 9/93 (9%)

Query: 54  DLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSC-----GAPLEVPRTLRNFSGLEYLNL 108
           D++ LD+   +   +   E +  L + + + L           ++   LR    L  LNL
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 109 ENSHLFSVGSLEWLSHLSS----LRHLDLSYIN 137
            ++ L  VG    L  L +    ++ L L    
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.8 bits (99), Expect = 6e-06
 Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 7/89 (7%)

Query: 8   CCKWRGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGG 67
             K             KV   +  +    R   + GT+   L +L  L  L++S N+  G
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

Query: 68  SPIPEFIGSLSKLRYLNLS-----CGAPL 91
             IP+  G+L +      +     CG+PL
Sbjct: 283 -EIPQG-GNLQRFDVSAYANNKCLCGSPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 38.2 bits (87), Expect = 3e-04
 Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 6/83 (7%)

Query: 7   DCC--KWRGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNND 64
           DCC   W GV C   T   +V NL  S     +       I  +L  L  L  L +   +
Sbjct: 32  DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKP----YPIPSSLANLPYLNFLYIGGIN 87

Query: 65  FGGSPIPEFIGSLSKLRYLNLSC 87
               PIP  I  L++L YL ++ 
Sbjct: 88  NLVGPIPPAIAKLTQLHYLYITH 110

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.0 bits (92), Expect = 6e-05
 Identities = 22/139 (15%), Positives = 36/139 (25%), Gaps = 22/139 (15%)

Query: 54  DLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV-PRTLRNFSGLEYLNLENSH 112
           D   LDL NN            +L  L  L L      ++ P        LE L L  + 
Sbjct: 32  DTALLDLQNNKITEIK-DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 113 LFSVGS--------------------LEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLR 152
           L  +                          + L+ +  ++L    L  S         ++
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 153 SLKTFVLRSCALPPINPSF 171
            L    +    +  I    
Sbjct: 151 KLSYIRIADTNITTIPQGL 169

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 8e-05
 Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 4/96 (4%)

Query: 45  ISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLE 104
           +   + K +D     L        P    + + +    LN        +     N   L 
Sbjct: 12  LKLIMSKRYDGSQQALDLKGLRSDPD---LVAQNIDVVLNRRSSMAATLRIIEENIPELL 68

Query: 105 YLNLENSHLFSVGSLEW-LSHLSSLRHLDLSYINLT 139
            LNL N+ L+ +  +   +    +L+ L+LS   L 
Sbjct: 69  SLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 104

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 3e-04
 Identities = 22/128 (17%), Positives = 36/128 (28%), Gaps = 13/128 (10%)

Query: 7   DCCKWRGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFG 66
           D  +                 L                I         L  L++SNN   
Sbjct: 238 DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN--- 294

Query: 67  GSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLS 126
              + E      +L  L  S     EVP   +N   L+ L++E + L     +       
Sbjct: 295 --KLIELPALPPRLERLIASFNHLAEVPELPQN---LKQLHVEYNPLREFPDI-----PE 344

Query: 127 SLRHLDLS 134
           S+  L ++
Sbjct: 345 SVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.0 bits (81), Expect = 0.002
 Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 8/76 (10%)

Query: 77  LSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYI 136
              L  LN+S    +E+P        LE L    +HL  V  L       +L+ L + Y 
Sbjct: 283 PPSLEELNVSNNKLIELPALPPR---LERLIASFNHLAEVPEL-----PQNLKQLHVEYN 334

Query: 137 NLTKSRDWFQVVAKLR 152
            L +  D  + V  LR
Sbjct: 335 PLREFPDIPESVEDLR 350

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 5e-04
 Identities = 28/109 (25%), Positives = 40/109 (36%), Gaps = 2/109 (1%)

Query: 43  GTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLS-CGAPLEVPRTLRNFS 101
                       ++H+DLSN+    S +   +   SKL+ L+L        +  TL   S
Sbjct: 36  DQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS 95

Query: 102 GLEYLNL-ENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVA 149
            L  LNL   S          LS  S L  L+LS+      +     VA
Sbjct: 96  NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA 144

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 34.6 bits (78), Expect = 0.003
 Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 3/40 (7%)

Query: 47  PALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLS 86
             L  L +L  + L NN          + + S L  + L+
Sbjct: 189 SPLASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLT 225

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 34.9 bits (78), Expect = 0.004
 Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 3/46 (6%)

Query: 45 ISPALLKLHDLRHLDLSNNDFGG---SPIPEFIGSLSKLRYLNLSC 87
          +   LL+   ++ + LS N  G      + E I S   L     S 
Sbjct: 23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	178
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.86
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.68
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.66
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.66
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.65
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.63
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.61
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.61
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.6
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.59
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.58
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.56
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.56
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.55
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.55
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.52
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.44
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.44
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.43
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.42
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.36
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.35
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.34
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.3
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.3
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.24
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.24
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.15
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.13
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.11
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.8
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.76
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.74
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.72
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.64
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.49
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.49
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.34
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.07
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.94
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.86
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.68

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.86  E-value=5.5e-22  Score=147.83  Aligned_cols=110  Identities=26%  Similarity=0.517  Sum_probs=64.9

Q ss_pred             CCcCCCce--eeeeeeecCCC--CCeeEEEecCCccc------------------cccc-ccccccchhhhhCCCCCCEE
Q 048040            2 EDEKRDCC--KWRGVHCRNTT--GHVKVLNLRTSDYE------------------FARR-KFLKGTISPALLKLHDLRHL   58 (178)
Q Consensus         2 ~~~~~~~c--~~~~~~~~~~~--~~l~~l~l~~~~~~------------------~~~~-~~l~~~~~~~l~~l~~L~~L   58 (178)
                      |+.++|+|  .|.||.|....  .+|+.|+|+++.+.                  +++. |.+.|.+|+.+.++.+|++|
T Consensus        27 W~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L  106 (313)
T d1ogqa_          27 WLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL  106 (313)
T ss_dssp             CCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEE
T ss_pred             CCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchh
Confidence            45688999  59999998643  47999999998652                  2332 56666677777777777777


Q ss_pred             EccCCCCCCCCchhhhcccCCCcEEeccCC-CCCccchhccCCCCCcEEEeeCCc
Q 048040           59 DLSNNDFGGSPIPEFIGSLSKLRYLNLSCG-APLEVPRTLRNFSGLEYLNLENSH  112 (178)
Q Consensus        59 ~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~l~~L~~L~l~~n~  112 (178)
                      ++++|.+.+. .+..+..+..|+.++++.| ....+|..+..++.++.+++++|.
T Consensus       107 ~Ls~N~l~~~-~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~  160 (313)
T d1ogqa_         107 YITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR  160 (313)
T ss_dssp             EEEEECCEEE-CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred             hhcccccccc-ccccccchhhhcccccccccccccCchhhccCcccceeeccccc
Confidence            7776666543 3333334444444444333 222233344444444444444443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.68  E-value=3e-17  Score=113.98  Aligned_cols=155  Identities=23%  Similarity=0.215  Sum_probs=106.7

Q ss_pred             eeeeeeeecCC---------CCCeeEEEecCCcccccccccccccc-hhhhhCCCCCCEEEccCCCCCCCCchhhhcccC
Q 048040            9 CKWRGVHCRNT---------TGHVKVLNLRTSDYEFARRKFLKGTI-SPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLS   78 (178)
Q Consensus         9 c~~~~~~~~~~---------~~~l~~l~l~~~~~~~~~~~~l~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~   78 (178)
                      |.+..|.|...         ...+++|+|++|        .+++.+ +..|..+.+|+.|++++|.+... .+..+..++
T Consensus         8 C~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N--------~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~-~~~~~~~~~   78 (192)
T d1w8aa_           8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDN--------ELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGAS   78 (192)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSC--------CCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCT
T ss_pred             EcCCEEEEeCCCcCccCCCCCCCCCEEEeCCC--------CCcccccccccCCCceEeeeeccccccccc-ccccccccc
Confidence            56777777532         246788888888        666544 44677888888888888888876 677788888


Q ss_pred             CCcEEeccCCCCCccch-hccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEE
Q 048040           79 KLRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTF  157 (178)
Q Consensus        79 ~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l  157 (178)
                      .|++|++++|.+..++. .|..+++|++|++++|++.+.+ +..+..+++|+++++++|.+....... .+..  .++.+
T Consensus        79 ~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~-~~~f~~l~~L~~l~L~~N~~~~~~~~~-~~~~--~l~~~  154 (192)
T d1w8aa_          79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM-PGSFEHLNSLTSLNLASNPFNCNCHLA-WFAE--WLRKK  154 (192)
T ss_dssp             TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECTTCCBCCSGGGH-HHHH--HHHHH
T ss_pred             ccceeeeccccccccCHHHHhCCCcccccccCCccccccC-HHHhcCCcccccccccccccccccchH-HHhh--hhhhh
Confidence            88888888887777754 6788888888888888886654 244677888888888888887654311 2211  12333


Q ss_pred             EecCCCCCCCCCccccccc
Q 048040          158 VLRSCALPPINPSFICGWE  176 (178)
Q Consensus       158 ~l~~n~~~~~~~~~~~~l~  176 (178)
                      .+..+.++...|..+.+++
T Consensus       155 ~l~~~~~~c~~p~~l~~~~  173 (192)
T d1w8aa_         155 SLNGGAARCGAPSKVRDVQ  173 (192)
T ss_dssp             CCSGGGCBBCSSTTTTTSB
T ss_pred             cccCCCeEeCCChhhcCCE
Confidence            4445555545555555443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=8e-16  Score=99.44  Aligned_cols=120  Identities=27%  Similarity=0.274  Sum_probs=90.2

Q ss_pred             EEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCc
Q 048040           25 VLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLE  104 (178)
Q Consensus        25 ~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~  104 (178)
                      .|++++|        .++ .++ .+..+.+|++|++++|.++.  +|..+..+++|+.|++++|.+..+| .+..+++|+
T Consensus         2 ~L~Ls~n--------~l~-~l~-~l~~l~~L~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~   68 (124)
T d1dcea3           2 VLHLAHK--------DLT-VLC-HLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALENVD-GVANLPRLQ   68 (124)
T ss_dssp             EEECTTS--------CCS-SCC-CGGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCC
T ss_pred             EEEcCCC--------CCC-CCc-ccccCCCCCEEECCCCccCc--chhhhhhhhcccccccccccccccC-ccccccccC
Confidence            5788888        555 233 36778888999999998886  6777888888999999888777775 477888899


Q ss_pred             EEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccH-HHHHhccCCCcEE
Q 048040          105 YLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDW-FQVVAKLRSLKTF  157 (178)
Q Consensus       105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~-~~~~~~l~~L~~l  157 (178)
                      .+++++|++...+....++.+++|+++++++|.++..+.+ ......+++|+.+
T Consensus        69 ~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          69 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             EEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             eEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            9999988887666555578888889999998888765322 2344566777765

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=4.1e-16  Score=113.28  Aligned_cols=140  Identities=22%  Similarity=0.269  Sum_probs=94.9

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNF  100 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l  100 (178)
                      ..++.|+|++|        .+.+..+..|.++++|+.|++++|.++.  ++ .+..+++|++|++++|.+...+..+..+
T Consensus        31 ~~l~~L~Ls~N--------~i~~l~~~~f~~l~~L~~L~L~~N~l~~--l~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l   99 (266)
T d1p9ag_          31 KDTTILHLSEN--------LLYTFSLATLMPYTRLTQLNLDRAELTK--LQ-VDGTLPVLGTLDLSHNQLQSLPLLGQTL   99 (266)
T ss_dssp             TTCCEEECTTS--------CCSEEEGGGGTTCTTCCEEECTTSCCCE--EE-CCSCCTTCCEEECCSSCCSSCCCCTTTC
T ss_pred             cCCCEEECcCC--------cCCCcCHHHhhccccccccccccccccc--cc-cccccccccccccccccccccccccccc
Confidence            56899999999        5665445567777778888887777765  33 2356677777777777655555555555


Q ss_pred             CCCcEEEeeCCcc------------------------ccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcE
Q 048040          101 SGLEYLNLENSHL------------------------FSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKT  156 (178)
Q Consensus       101 ~~L~~L~l~~n~l------------------------~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~  156 (178)
                      ++|+.|+++++.+                        ...+ ...+..+++++.+++++|.++..+  +..+..+++|++
T Consensus       100 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~-~~~~~~l~~l~~l~l~~N~l~~~~--~~~~~~l~~L~~  176 (266)
T d1p9ag_         100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP-PGLLTPTPKLEKLSLANNNLTELP--AGLLNGLENLDT  176 (266)
T ss_dssp             TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCSCCC--TTTTTTCTTCCE
T ss_pred             cccccccccccccceeeccccccccccccccccccccceec-cccccccccchhcccccccccccC--ccccccccccce
Confidence            6666666655554                        2222 122455678888888888888775  246778888999


Q ss_pred             EEecCCCCCCCCCcccccc
Q 048040          157 FVLRSCALPPINPSFICGW  175 (178)
Q Consensus       157 l~l~~n~~~~~~~~~~~~l  175 (178)
                      |++++|+++ .+|+.+..+
T Consensus       177 L~Ls~N~L~-~lp~~~~~~  194 (266)
T d1p9ag_         177 LLLQENSLY-TIPKGFFGS  194 (266)
T ss_dssp             EECCSSCCC-CCCTTTTTT
T ss_pred             eecccCCCc-ccChhHCCC
Confidence            999999888 566555443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=4.1e-16  Score=100.82  Aligned_cols=104  Identities=24%  Similarity=0.252  Sum_probs=91.9

Q ss_pred             CEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccC
Q 048040           56 RHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSY  135 (178)
Q Consensus        56 ~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~  135 (178)
                      ++|++++|.++.  ++ .+..++.|++|++++|.+..+|..+..+++|+.|++++|.+.+.+   .++.+++|+++++++
T Consensus         1 R~L~Ls~n~l~~--l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~---~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLTV--LC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD---GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCSS--CC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG---GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCCC--Cc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC---ccccccccCeEECCC
Confidence            579999999997  44 478999999999999999999988999999999999999997654   388999999999999


Q ss_pred             CCCCCcccHHHHHhccCCCcEEEecCCCCCC
Q 048040          136 INLTKSRDWFQVVAKLRSLKTFVLRSCALPP  166 (178)
Q Consensus       136 n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~  166 (178)
                      |.++..+. ...+..+++|+++++++|+++.
T Consensus        75 N~i~~~~~-~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          75 NRLQQSAA-IQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             SCCCSSST-TGGGGGCTTCCEEECTTSGGGG
T ss_pred             CccCCCCC-chhhcCCCCCCEEECCCCcCCc
Confidence            99998864 3467889999999999999874

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=7.2e-16  Score=104.16  Aligned_cols=126  Identities=21%  Similarity=0.244  Sum_probs=99.2

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchh-ccC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRT-LRN   99 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~   99 (178)
                      ..+++|++++|        .++. ++..+..+.+|+.|++++|.++.  + +.+..+++|++|++++|.+..++.. +..
T Consensus        18 ~~lr~L~L~~n--------~I~~-i~~~~~~l~~L~~L~Ls~N~i~~--l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~   85 (162)
T d1a9na_          18 VRDRELDLRGY--------KIPV-IENLGATLDQFDAIDFSDNEIRK--L-DGFPLLRRLKTLLVNNNRICRIGEGLDQA   85 (162)
T ss_dssp             TSCEEEECTTS--------CCCS-CCCGGGGTTCCSEEECCSSCCCE--E-CCCCCCSSCCEEECCSSCCCEECSCHHHH
T ss_pred             CcCcEEECCCC--------CCCc-cCccccccccCCEEECCCCCCCc--c-CCcccCcchhhhhcccccccCCCcccccc
Confidence            46788999999        4543 34445678899999999999986  4 3478889999999999988877654 467


Q ss_pred             CCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccH-HHHHhccCCCcEEE
Q 048040          100 FSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDW-FQVVAKLRSLKTFV  158 (178)
Q Consensus       100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~-~~~~~~l~~L~~l~  158 (178)
                      +++|++|++++|++...+....+..+++|+++++++|.++..+.+ ...++.+++|+.|+
T Consensus        86 l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          86 LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            899999999999987665555578889999999999998877642 23577889999887

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.61  E-value=9.2e-16  Score=106.32  Aligned_cols=132  Identities=19%  Similarity=0.201  Sum_probs=107.6

Q ss_pred             eeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCcc-chhccCCC
Q 048040           23 VKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV-PRTLRNFS  101 (178)
Q Consensus        23 l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~  101 (178)
                      .+.++++++        .++ .+|+.+  ..++++|+|++|.++....+..|..+++|+.|++++|.+..+ +..+..++
T Consensus        10 ~~~v~Cs~~--------~L~-~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~   78 (192)
T d1w8aa_          10 GTTVDCTGR--------GLK-EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS   78 (192)
T ss_dssp             TTEEECTTS--------CCS-SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT
T ss_pred             CCEEEEeCC--------CcC-ccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccccc
Confidence            357889888        555 445433  268999999999997631467789999999999999966655 45788899


Q ss_pred             CCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCC
Q 048040          102 GLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPIN  168 (178)
Q Consensus       102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  168 (178)
                      +|+.|++++|++...+. ..+..+++|++|++++|.|+..+  +..+..+++|+++++++|.+....
T Consensus        79 ~L~~L~Ls~N~l~~l~~-~~F~~l~~L~~L~L~~N~l~~i~--~~~f~~l~~L~~l~L~~N~~~~~~  142 (192)
T d1w8aa_          79 HIQELQLGENKIKEISN-KMFLGLHQLKTLNLYDNQISCVM--PGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             TCCEEECCSCCCCEECS-SSSTTCTTCCEEECCSSCCCEEC--TTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             ccceeeeccccccccCH-HHHhCCCcccccccCCccccccC--HHHhcCCccccccccccccccccc
Confidence            99999999999876653 44788999999999999999986  347889999999999999987543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.6e-15  Score=109.88  Aligned_cols=132  Identities=23%  Similarity=0.245  Sum_probs=97.7

Q ss_pred             cccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccc-hhccCCCCCcEEEeeCCccccCCc
Q 048040           40 FLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVP-RTLRNFSGLEYLNLENSHLFSVGS  118 (178)
Q Consensus        40 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~  118 (178)
                      .+....+..+.++++|++|++++|.+... .+..+..+..|+.+++++|.+..+| ..+..+++|+.|++++|++...+.
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~  170 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCGLQEL-GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             ccccccchhhcccccCCEEecCCcccccc-cccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccch
Confidence            34444466778888888988888888765 5566777788888888888776665 456777888888888888755442


Q ss_pred             hHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCcccccc
Q 048040          119 LEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGW  175 (178)
Q Consensus       119 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l  175 (178)
                       ..+..+++|+.+++++|.+++..  +..+.++++|++|++++|++.+..+..|..+
T Consensus       171 -~~f~~l~~L~~l~l~~N~l~~i~--~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~  224 (284)
T d1ozna_         171 -RAFRGLHSLDRLLLHQNRVAHVH--PHAFRDLGRLMTLYLFANNLSALPTEALAPL  224 (284)
T ss_dssp             -TTTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCSCCCHHHHTTC
T ss_pred             -hhhccccccchhhhhhccccccC--hhHhhhhhhcccccccccccccccccccccc
Confidence             34677788888888888887764  3467788888888888888887777766554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=9.2e-16  Score=103.64  Aligned_cols=113  Identities=19%  Similarity=0.212  Sum_probs=96.6

Q ss_pred             hhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCC
Q 048040           49 LLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSL  128 (178)
Q Consensus        49 l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  128 (178)
                      +.+..++++|+|++|+|+.  ++..+..+++|+.|++++|.+..+ +.+..+++|+.|++++|++...+. ..+..+++|
T Consensus        14 ~~n~~~lr~L~L~~n~I~~--i~~~~~~l~~L~~L~Ls~N~i~~l-~~~~~l~~L~~L~ls~N~i~~l~~-~~~~~l~~L   89 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGE-GLDQALPDL   89 (162)
T ss_dssp             EECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECS-CHHHHCTTC
T ss_pred             ccCcCcCcEEECCCCCCCc--cCccccccccCCEEECCCCCCCcc-CCcccCcchhhhhcccccccCCCc-ccccccccc
Confidence            5677889999999999998  566667899999999999988877 458899999999999999866543 335779999


Q ss_pred             CEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCC
Q 048040          129 RHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPP  166 (178)
Q Consensus       129 ~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~  166 (178)
                      ++|++++|.++..+. ...+..+++|+++++++|++..
T Consensus        90 ~~L~L~~N~i~~~~~-l~~l~~l~~L~~L~l~~N~i~~  126 (162)
T d1a9na_          90 TELILTNNSLVELGD-LDPLASLKSLTYLCILRNPVTN  126 (162)
T ss_dssp             CEEECCSCCCCCGGG-GGGGGGCTTCCEEECCSSGGGG
T ss_pred             ccceecccccccccc-ccccccccccchhhcCCCcccc
Confidence            999999999998864 3468899999999999999874

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.59  E-value=1.9e-14  Score=105.99  Aligned_cols=69  Identities=20%  Similarity=0.230  Sum_probs=41.0

Q ss_pred             CCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCccc
Q 048040          100 FSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFI  172 (178)
Q Consensus       100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~  172 (178)
                      ++.++.|++++|.+.+.. +..+..+++|++|++++|+++..+.   .+.++++|++|++++|+++......|
T Consensus       194 ~~~l~~L~~s~n~l~~~~-~~~~~~l~~L~~L~L~~N~L~~lp~---~l~~l~~L~~L~Ls~N~i~~i~~~~f  262 (305)
T d1xkua_         194 LNNLAKLGLSFNSISAVD-NGSLANTPHLRELHLNNNKLVKVPG---GLADHKYIQVVYLHNNNISAIGSNDF  262 (305)
T ss_dssp             CTTCCEEECCSSCCCEEC-TTTGGGSTTCCEEECCSSCCSSCCT---TTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred             cccccccccccccccccc-cccccccccceeeeccccccccccc---ccccccCCCEEECCCCccCccChhhc
Confidence            344444444444443332 2335666677777777777766653   56677777777777777775544444

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=3.7e-14  Score=98.60  Aligned_cols=114  Identities=25%  Similarity=0.354  Sum_probs=81.2

Q ss_pred             hhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCC
Q 048040           49 LLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSL  128 (178)
Q Consensus        49 l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  128 (178)
                      +..+++|+.|++++|.+..  ++ .+..++.|+.++++++..... ..+..+++|+.+++++|++...+   .+..++++
T Consensus        80 l~~l~~L~~L~l~~n~~~~--~~-~l~~l~~L~~L~l~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~---~l~~~~~L  152 (199)
T d2omxa2          80 LKNLTKLVDILMNNNQIAD--IT-PLANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDIS---ALSGLTSL  152 (199)
T ss_dssp             GTTCTTCCEEECCSSCCCC--CG-GGTTCTTCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSCCCCCG---GGTTCTTC
T ss_pred             ccCCccccccccccccccc--cc-ccccccccccccccccccccc-cccchhhhhHHhhhhhhhhcccc---cccccccc
Confidence            6667777777777777665  33 356677777777776644333 34667788888888888864432   36778889


Q ss_pred             CEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCcccccc
Q 048040          129 RHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGW  175 (178)
Q Consensus       129 ~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l  175 (178)
                      +.|++.+|.+++.+    .++++++|++|++++|+++.. + .++.+
T Consensus       153 ~~L~l~~n~l~~l~----~l~~l~~L~~L~ls~N~i~~i-~-~l~~L  193 (199)
T d2omxa2         153 QQLNFSSNQVTDLK----PLANLTTLERLDISSNKVSDI-S-VLAKL  193 (199)
T ss_dssp             SEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCCCC-G-GGGGC
T ss_pred             cccccccccccCCc----cccCCCCCCEEECCCCCCCCC-c-cccCC
Confidence            99999999888875    467899999999999998863 3 34444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.56  E-value=5.5e-14  Score=98.52  Aligned_cols=132  Identities=24%  Similarity=0.287  Sum_probs=94.0

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNF  100 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l  100 (178)
                      ..+++|++++|        .+++. + .+..+++|++|++++|.++.  ++ .+..+++|+.+++++|....+ ..+..+
T Consensus        68 ~~L~~L~L~~n--------~i~~l-~-~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~~~~~~~~-~~l~~l  133 (210)
T d1h6ta2          68 PNVTKLFLNGN--------KLTDI-K-PLANLKNLGWLFLDENKVKD--LS-SLKDLKKLKSLSLEHNGISDI-NGLVHL  133 (210)
T ss_dssp             TTCCEEECCSS--------CCCCC-G-GGTTCTTCCEEECCSSCCCC--GG-GGTTCTTCCEEECTTSCCCCC-GGGGGC
T ss_pred             CCCCEEeCCCc--------cccCc-c-ccccCccccccccccccccc--cc-ccccccccccccccccccccc-cccccc
Confidence            45666666666        55542 2 25677778888888887776  44 466777888888877755443 346677


Q ss_pred             CCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCcccccc
Q 048040          101 SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGW  175 (178)
Q Consensus       101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l  175 (178)
                      +.++.+++.+|.+....   .+..+++|+++++++|.+++.+    .++++++|++|++++|+++. +| .++++
T Consensus       134 ~~l~~l~~~~n~l~~~~---~~~~l~~L~~l~l~~n~l~~i~----~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l  199 (210)
T d1h6ta2         134 PQLESLYLGNNKITDIT---VLSRLTKLDTLSLEDNQISDIV----PLAGLTKLQNLYLSKNHISD-LR-ALAGL  199 (210)
T ss_dssp             TTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCCB-CG-GGTTC
T ss_pred             ccccccccccccccccc---cccccccccccccccccccccc----cccCCCCCCEEECCCCCCCC-Ch-hhcCC
Confidence            77888888888764432   3677889999999999998775    37789999999999999885 34 35544

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.7e-14  Score=102.78  Aligned_cols=140  Identities=21%  Similarity=0.126  Sum_probs=103.3

Q ss_pred             CCeeEEEecCCccc--------------ccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEecc
Q 048040           21 GHVKVLNLRTSDYE--------------FARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLS   86 (178)
Q Consensus        21 ~~l~~l~l~~~~~~--------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~   86 (178)
                      ..++.|++++|.+.              ++++|.+.. .+..+..+++|+.|++++|.+... .+..+..+.+++.+++.
T Consensus        55 ~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~l~~L~l~  132 (266)
T d1p9ag_          55 TRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSL-PLGALRGLGELQELYLK  132 (266)
T ss_dssp             TTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCC-CSSTTTTCTTCCEEECT
T ss_pred             ccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccee-ecccccccccccccccc
Confidence            56777777777553              223334443 344566677777777777777664 45566677777788887


Q ss_pred             CCCCCccch-hccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCC
Q 048040           87 CGAPLEVPR-TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALP  165 (178)
Q Consensus        87 ~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~  165 (178)
                      +|.+..++. .+..++.++.+++++|++...+ +..++.+++|++|++++|.++..|.   .+..+++|+.|++++|++.
T Consensus       133 ~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~L~~lp~---~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELP-AGLLNGLENLDTLLLQENSLYTIPK---GFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC-TTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCCCSEEECCSCCBC
T ss_pred             ccccceeccccccccccchhcccccccccccC-ccccccccccceeecccCCCcccCh---hHCCCCCCCEEEecCCCCC
Confidence            776666654 5567899999999999986655 3447889999999999999998875   5668899999999999876


Q ss_pred             C
Q 048040          166 P  166 (178)
Q Consensus       166 ~  166 (178)
                      -
T Consensus       209 C  209 (266)
T d1p9ag_         209 C  209 (266)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.55  E-value=9.1e-14  Score=96.58  Aligned_cols=127  Identities=23%  Similarity=0.345  Sum_probs=105.2

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNF  100 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l  100 (178)
                      ..++.|+++++.        +.. + +.+..+++|++|++++|.+++  +++ +..+++|++|++++|....++ .+..+
T Consensus        40 ~~l~~L~l~~~~--------i~~-l-~~l~~l~nL~~L~Ls~N~l~~--~~~-l~~l~~L~~L~l~~n~~~~~~-~l~~l  105 (199)
T d2omxa2          40 DQVTTLQADRLG--------IKS-I-DGVEYLNNLTQINFSNNQLTD--ITP-LKNLTKLVDILMNNNQIADIT-PLANL  105 (199)
T ss_dssp             TTCCEEECTTSC--------CCC-C-TTGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCCG-GGTTC
T ss_pred             cCCCEEECCCCC--------CCC-c-cccccCCCcCcCccccccccC--ccc-ccCCccccccccccccccccc-ccccc
Confidence            578899999994        442 2 236789999999999999988  443 889999999999999776665 47899


Q ss_pred             CCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCC
Q 048040          101 SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPIN  168 (178)
Q Consensus       101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  168 (178)
                      +.|+.+++.++......   .+..+++|+.|++++|.+...+    .+..+++|+.+++.+|++++..
T Consensus       106 ~~L~~L~l~~~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~----~l~~~~~L~~L~l~~n~l~~l~  166 (199)
T d2omxa2         106 TNLTGLTLFNNQITDID---PLKNLTNLNRLELSSNTISDIS----ALSGLTSLQQLNFSSNQVTDLK  166 (199)
T ss_dssp             TTCSEEECCSSCCCCCG---GGTTCTTCSEEECCSSCCCCCG----GGTTCTTCSEEECCSSCCCCCG
T ss_pred             ccccccccccccccccc---ccchhhhhHHhhhhhhhhcccc----cccccccccccccccccccCCc
Confidence            99999999999875443   3778999999999999998765    5788999999999999998643

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3e-14  Score=104.06  Aligned_cols=137  Identities=23%  Similarity=0.199  Sum_probs=114.4

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccc-hhccC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVP-RTLRN   99 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~   99 (178)
                      ..++.|++++|        .+....+..+....+|+.+++++|.++.. .+..+..++.|+.|++++|.+..++ ..+..
T Consensus       105 ~~L~~L~l~~n--------~~~~~~~~~~~~~~~L~~l~l~~N~l~~i-~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~  175 (284)
T d1ozna_         105 GRLHTLHLDRC--------GLQELGPGLFRGLAALQYLYLQDNALQAL-PDDTFRDLGNLTHLFLHGNRISSVPERAFRG  175 (284)
T ss_dssp             TTCCEEECTTS--------CCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             ccCCEEecCCc--------ccccccccccchhcccchhhhcccccccc-ChhHhccccchhhcccccCcccccchhhhcc
Confidence            56888888888        66655666778889999999999999985 5677888999999999999777764 47788


Q ss_pred             CCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCC
Q 048040          100 FSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINP  169 (178)
Q Consensus       100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  169 (178)
                      +++|+.+++++|++.... +..++.+++|++|++++|.+...+  +..+..+++|++|++++|++....+
T Consensus       176 l~~L~~l~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N~i~~~~--~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         176 LHSLDRLLLHQNRVAHVH-PHAFRDLGRLMTLYLFANNLSALP--TEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             CTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCSCCC--HHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             ccccchhhhhhccccccC-hhHhhhhhhccccccccccccccc--ccccccccccCEEEecCCCCCCCcc
Confidence            999999999999986554 455888999999999999999886  4688899999999999999876543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.52  E-value=2.6e-13  Score=95.04  Aligned_cols=127  Identities=23%  Similarity=0.322  Sum_probs=105.0

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNF  100 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l  100 (178)
                      ..++.|+++++        .+... + .+..+++|+.|++++|.+++  ++ .+..+++|++|++++|.+..++ .+..+
T Consensus        46 ~~L~~L~l~~~--------~i~~l-~-~l~~l~~L~~L~L~~n~i~~--l~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l  111 (210)
T d1h6ta2          46 NSIDQIIANNS--------DIKSV-Q-GIQYLPNVTKLFLNGNKLTD--IK-PLANLKNLGWLFLDENKVKDLS-SLKDL  111 (210)
T ss_dssp             HTCCEEECTTS--------CCCCC-T-TGGGCTTCCEEECCSSCCCC--CG-GGTTCTTCCEEECCSSCCCCGG-GGTTC
T ss_pred             cCccEEECcCC--------CCCCc-h-hHhhCCCCCEEeCCCccccC--cc-ccccCccccccccccccccccc-ccccc
Confidence            35788999998        44432 2 26789999999999999998  44 3678999999999999887776 58889


Q ss_pred             CCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCC
Q 048040          101 SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPIN  168 (178)
Q Consensus       101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  168 (178)
                      ++|+.+++.+|.+....   .+..+++++.+++++|.+++.+    ....+++|+++++++|++++..
T Consensus       112 ~~L~~L~l~~~~~~~~~---~l~~l~~l~~l~~~~n~l~~~~----~~~~l~~L~~l~l~~n~l~~i~  172 (210)
T d1h6ta2         112 KKLKSLSLEHNGISDIN---GLVHLPQLESLYLGNNKITDIT----VLSRLTKLDTLSLEDNQISDIV  172 (210)
T ss_dssp             TTCCEEECTTSCCCCCG---GGGGCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCCCCG
T ss_pred             ccccccccccccccccc---cccccccccccccccccccccc----cccccccccccccccccccccc
Confidence            99999999999875443   3788899999999999998865    4678999999999999998643

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.44  E-value=4.2e-14  Score=104.60  Aligned_cols=138  Identities=19%  Similarity=0.207  Sum_probs=107.2

Q ss_pred             ccccccccc--cchhhhhCCCCCCEEEccC-CCCCCCCchhhhcccCCCcEEeccCCCCCcc-chhccCCCCCcEEEeeC
Q 048040           35 FARRKFLKG--TISPALLKLHDLRHLDLSN-NDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV-PRTLRNFSGLEYLNLEN  110 (178)
Q Consensus        35 ~~~~~~l~~--~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~  110 (178)
                      .++.+.+.+  .+|+.+..+++|++|++++ |.+++. +|..+..+++|++|++++|.+... +..+..+..|+.+++..
T Consensus        56 ~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~  134 (313)
T d1ogqa_          56 DLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY  134 (313)
T ss_dssp             EEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCS
T ss_pred             ECCCCCCCCCCCCChHHhcCccccccccccccccccc-cccccccccccchhhhccccccccccccccchhhhccccccc
Confidence            456666776  4788999999999999986 788875 888899999999999999865544 55677888999999999


Q ss_pred             CccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCC-cEEEecCCCCCCCCCccccccc
Q 048040          111 SHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSL-KTFVLRSCALPPINPSFICGWE  176 (178)
Q Consensus       111 n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L-~~l~l~~n~~~~~~~~~~~~l~  176 (178)
                      |.+... .+..++.+++++++++++|.+.+..  +..+..+..+ +.+++++|++++..|..+..+.
T Consensus       135 N~~~~~-~p~~l~~l~~L~~l~l~~n~l~~~i--p~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~  198 (313)
T d1ogqa_         135 NALSGT-LPPSISSLPNLVGITFDGNRISGAI--PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN  198 (313)
T ss_dssp             SEEESC-CCGGGGGCTTCCEEECCSSCCEEEC--CGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC
T ss_pred             cccccc-CchhhccCcccceeecccccccccc--ccccccccccccccccccccccccccccccccc
Confidence            886433 3455888999999999999887652  2356666654 7888888988888887776653

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.44  E-value=1.3e-12  Score=98.42  Aligned_cols=133  Identities=22%  Similarity=0.338  Sum_probs=88.2

Q ss_pred             CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCC-----------
Q 048040           20 TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCG-----------   88 (178)
Q Consensus        20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~-----------   88 (178)
                      ...++.+++++|.+        .. + +.+..+.+|+.+++++|.+++.  + .+..+++|+.++++++           
T Consensus       218 ~~~L~~L~l~~n~l--------~~-~-~~l~~l~~L~~L~l~~n~l~~~--~-~~~~~~~L~~L~l~~~~l~~~~~~~~~  284 (384)
T d2omza2         218 LTNLDELSLNGNQL--------KD-I-GTLASLTNLTDLDLANNQISNL--A-PLSGLTKLTELKLGANQISNISPLAGL  284 (384)
T ss_dssp             CTTCCEEECCSSCC--------CC-C-GGGGGCTTCSEEECCSSCCCCC--G-GGTTCTTCSEEECCSSCCCCCGGGTTC
T ss_pred             cCCCCEEECCCCCC--------CC-c-chhhcccccchhccccCccCCC--C-cccccccCCEeeccCcccCCCCccccc
Confidence            46678888888843        32 1 2344455555555555555542  2 2444455555555444           


Q ss_pred             -----------CCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEE
Q 048040           89 -----------APLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTF  157 (178)
Q Consensus        89 -----------~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l  157 (178)
                                 .+..+ ..+..+++++.+++++|++.+..   .+..+++|+.|++++|.+++.+    .++++++|++|
T Consensus       285 ~~l~~l~~~~n~l~~~-~~~~~~~~l~~L~ls~n~l~~l~---~l~~l~~L~~L~L~~n~l~~l~----~l~~l~~L~~L  356 (384)
T d2omza2         285 TALTNLELNENQLEDI-SPISNLKNLTYLTLYFNNISDIS---PVSSLTKLQRLFFANNKVSDVS----SLANLTNINWL  356 (384)
T ss_dssp             TTCSEEECCSSCCSCC-GGGGGCTTCSEEECCSSCCSCCG---GGGGCTTCCEEECCSSCCCCCG----GGGGCTTCCEE
T ss_pred             cccccccccccccccc-cccchhcccCeEECCCCCCCCCc---ccccCCCCCEEECCCCCCCCCh----hHcCCCCCCEE
Confidence                       33222 23556788899999999886543   2788999999999999998875    47889999999


Q ss_pred             EecCCCCCCCCCcccccc
Q 048040          158 VLRSCALPPINPSFICGW  175 (178)
Q Consensus       158 ~l~~n~~~~~~~~~~~~l  175 (178)
                      ++++|++++..|  ++++
T Consensus       357 ~l~~N~l~~l~~--l~~l  372 (384)
T d2omza2         357 SAGHNQISDLTP--LANL  372 (384)
T ss_dssp             ECCSSCCCBCGG--GTTC
T ss_pred             ECCCCcCCCChh--hccC
Confidence            999999997654  4444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.43  E-value=2.2e-12  Score=91.04  Aligned_cols=128  Identities=21%  Similarity=0.331  Sum_probs=86.1

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCcc-------
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV-------   93 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-------   93 (178)
                      ..++.|++++|        .+.+..+  +..+.+++.+++++|.++.  ++ .+..++.|+.+.++++.....       
T Consensus        63 ~~L~~L~ls~n--------~i~~~~~--l~~l~~l~~l~~~~n~~~~--i~-~l~~l~~L~~l~l~~~~~~~~~~~~~~~  129 (227)
T d1h6ua2          63 NNLIGLELKDN--------QITDLAP--LKNLTKITELELSGNPLKN--VS-AIAGLQSIKTLDLTSTQITDVTPLAGLS  129 (227)
T ss_dssp             TTCCEEECCSS--------CCCCCGG--GTTCCSCCEEECCSCCCSC--CG-GGTTCTTCCEEECTTSCCCCCGGGTTCT
T ss_pred             CCCcEeecCCc--------eeecccc--ccccccccccccccccccc--cc-cccccccccccccccccccccchhcccc
Confidence            45566666665        4443222  5666677777777666664  22 355666777776665522211       


Q ss_pred             --------------chhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEe
Q 048040           94 --------------PRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVL  159 (178)
Q Consensus        94 --------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l  159 (178)
                                    ...+..+++|+.|.+.+|.+....   .++.+++|++|++++|.+++.+    .++++++|++|++
T Consensus       130 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~---~l~~l~~L~~L~Ls~n~l~~l~----~l~~l~~L~~L~L  202 (227)
T d1h6ua2         130 NLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT---PLANLSKLTTLKADDNKISDIS----PLASLPNLIEVHL  202 (227)
T ss_dssp             TCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCCCG----GGGGCTTCCEEEC
T ss_pred             chhhhhchhhhhchhhhhccccccccccccccccccch---hhcccccceecccCCCccCCCh----hhcCCCCCCEEEC
Confidence                          012345677888888888875433   2788899999999999998876    3688999999999


Q ss_pred             cCCCCCCCC
Q 048040          160 RSCALPPIN  168 (178)
Q Consensus       160 ~~n~~~~~~  168 (178)
                      ++|++++..
T Consensus       203 s~N~lt~i~  211 (227)
T d1h6ua2         203 KNNQISDVS  211 (227)
T ss_dssp             TTSCCCBCG
T ss_pred             cCCcCCCCc
Confidence            999998654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.42  E-value=4.6e-15  Score=103.29  Aligned_cols=117  Identities=23%  Similarity=0.261  Sum_probs=91.5

Q ss_pred             cchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHh
Q 048040           44 TISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLS  123 (178)
Q Consensus        44 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  123 (178)
                      .++..+..+.+|++|++++|.++.  ++ .+..+++|+.|++++|.+..++.....+++|+.|++++|++...   ..+.
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~~--i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l---~~~~  112 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL---SGIE  112 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEESC--CC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCH---HHHH
T ss_pred             hhhhHHhcccccceeECcccCCCC--cc-cccCCccccChhhccccccccccccccccccccccccccccccc---cccc
Confidence            566778889999999999999887  43 47788899999999887776665445556788999999887543   3477


Q ss_pred             ccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCC
Q 048040          124 HLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPI  167 (178)
Q Consensus       124 ~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~  167 (178)
                      .+++|++|++++|.++..+. ...+..+++|+.|++++|++...
T Consensus       113 ~l~~L~~L~L~~N~i~~~~~-~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         113 KLVNLRVLYMSNNKITNWGE-IDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             HHHHSSEEEESEEECCCHHH-HHHHTTTTTCSEEEECSSHHHHH
T ss_pred             ccccccccccccchhccccc-cccccCCCccceeecCCCccccC
Confidence            78889999999999888753 35678888999999998877543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.36  E-value=6.8e-12  Score=94.34  Aligned_cols=103  Identities=21%  Similarity=0.313  Sum_probs=80.5

Q ss_pred             hhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCC
Q 048040           49 LLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSL  128 (178)
Q Consensus        49 l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  128 (178)
                      +..+..++.+.+..|.+.+   ...+..++.++.+++++|.+..++ .+..+++|+.|++++|+++..+   .++.+++|
T Consensus       281 ~~~~~~l~~l~~~~n~l~~---~~~~~~~~~l~~L~ls~n~l~~l~-~l~~l~~L~~L~L~~n~l~~l~---~l~~l~~L  353 (384)
T d2omza2         281 LAGLTALTNLELNENQLED---ISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNKVSDVS---SLANLTNI  353 (384)
T ss_dssp             GTTCTTCSEEECCSSCCSC---CGGGGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEECCSSCCCCCG---GGGGCTTC
T ss_pred             ccccccccccccccccccc---ccccchhcccCeEECCCCCCCCCc-ccccCCCCCEEECCCCCCCCCh---hHcCCCCC
Confidence            3344445555555555443   234678889999999999777765 4788999999999999986543   37889999


Q ss_pred             CEEeccCCCCCCcccHHHHHhccCCCcEEEecCC
Q 048040          129 RHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSC  162 (178)
Q Consensus       129 ~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n  162 (178)
                      ++|++++|.+++.+    .+.++++|+.|++++|
T Consensus       354 ~~L~l~~N~l~~l~----~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         354 NWLSAGHNQISDLT----PLANLTRITQLGLNDQ  383 (384)
T ss_dssp             CEEECCSSCCCBCG----GGTTCTTCSEEECCCE
T ss_pred             CEEECCCCcCCCCh----hhccCCCCCEeeCCCC
Confidence            99999999999886    3788999999999987

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.4e-12  Score=86.00  Aligned_cols=142  Identities=17%  Similarity=-0.011  Sum_probs=101.0

Q ss_pred             eeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCC-CCCCCchhhhcccCCCcEEeccCCCCCccc-hhccCC
Q 048040           23 VKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNND-FGGSPIPEFIGSLSKLRYLNLSCGAPLEVP-RTLRNF  100 (178)
Q Consensus        23 l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l  100 (178)
                      .++++++++        .+. ..|..+..+++|+.|++++|. ++.. .+..|..+++|+.|++++|.+..++ ..|..+
T Consensus        10 ~~~l~c~~~--------~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l   79 (156)
T d2ifga3          10 SSGLRCTRD--------GAL-DSLHHLPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFT   79 (156)
T ss_dssp             SSCEECCSS--------CCC-TTTTTSCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCCCEECTTGGGSC
T ss_pred             CCeEEecCC--------CCc-cCcccccCccccCeeecCCCcccccc-CchhhccccccCcceeeccccCCccccccccc
Confidence            345777776        444 356667888999999998764 8775 4677899999999999999888874 578999


Q ss_pred             CCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCcccccccc
Q 048040          101 SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGWEI  177 (178)
Q Consensus       101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~  177 (178)
                      ++|+.|++++|++.+.+..  .....+|++|++++|.+.-.-. ...+..+.......+..+.++...|..+.++|.
T Consensus        80 ~~L~~L~Ls~N~l~~l~~~--~~~~~~l~~L~L~~Np~~C~C~-~~~l~~~~~~~~~~~~~~~~~C~~p~~l~~~p~  153 (156)
T d2ifga3          80 PRLSRLNLSFNALESLSWK--TVQGLSLQELVLSGNPLHCSCA-LRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPN  153 (156)
T ss_dssp             SCCCEEECCSSCCSCCCST--TTCSCCCCEEECCSSCCCCCGG-GHHHHHHHHTTCSSCGGGCCCCSSSSCSSCCCC
T ss_pred             ccccceeccCCCCcccChh--hhccccccccccCCCcccCCch-HHHHHHHHHhccCccCcCCcEECcChHHCcCCc
Confidence            9999999999999766532  2234479999999999965422 112222222223334456677667777777664

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.34  E-value=1.8e-11  Score=86.23  Aligned_cols=129  Identities=19%  Similarity=0.272  Sum_probs=100.4

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNF  100 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l  100 (178)
                      ..++.|++.++        .++. ++ .+..+++|+.|++++|.++..  . .+..++.++++++++|....++ .+..+
T Consensus        41 ~~L~~L~l~~~--------~i~~-l~-~l~~l~~L~~L~ls~n~i~~~--~-~l~~l~~l~~l~~~~n~~~~i~-~l~~l  106 (227)
T d1h6ua2          41 DGITTLSAFGT--------GVTT-IE-GVQYLNNLIGLELKDNQITDL--A-PLKNLTKITELELSGNPLKNVS-AIAGL  106 (227)
T ss_dssp             HTCCEEECTTS--------CCCC-CT-TGGGCTTCCEEECCSSCCCCC--G-GGTTCCSCCEEECCSCCCSCCG-GGTTC
T ss_pred             CCcCEEECCCC--------CCCc-ch-hHhcCCCCcEeecCCceeecc--c-cccccccccccccccccccccc-ccccc
Confidence            56889999999        5553 32 378899999999999999874  3 3789999999999998666654 46678


Q ss_pred             CCCcEEEeeCCccccCC-------------------chHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecC
Q 048040          101 SGLEYLNLENSHLFSVG-------------------SLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRS  161 (178)
Q Consensus       101 ~~L~~L~l~~n~l~~~~-------------------~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~  161 (178)
                      ++|+.+.++++......                   ....+..+++|++|++++|.+++..    .++++++|+.|++++
T Consensus       107 ~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~----~l~~l~~L~~L~Ls~  182 (227)
T d1h6ua2         107 QSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT----PLANLSKLTTLKADD  182 (227)
T ss_dssp             TTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG----GGTTCTTCCEEECCS
T ss_pred             ccccccccccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccch----hhcccccceecccCC
Confidence            88888888887752221                   1122566778999999999988765    468899999999999


Q ss_pred             CCCCCC
Q 048040          162 CALPPI  167 (178)
Q Consensus       162 n~~~~~  167 (178)
                      |++++.
T Consensus       183 n~l~~l  188 (227)
T d1h6ua2         183 NKISDI  188 (227)
T ss_dssp             SCCCCC
T ss_pred             CccCCC
Confidence            999864

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.30  E-value=1.9e-14  Score=100.15  Aligned_cols=125  Identities=25%  Similarity=0.276  Sum_probs=98.5

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNF  100 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l  100 (178)
                      ..++.|++++|        .+.. ++ .+..+++|+.|++++|.++.  ++.....++.|++|++++|.+..++ .+..+
T Consensus        48 ~~L~~L~Ls~n--------~I~~-i~-~l~~l~~L~~L~Ls~N~i~~--i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l  114 (198)
T d1m9la_          48 KACKHLALSTN--------NIEK-IS-SLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIASLS-GIEKL  114 (198)
T ss_dssp             TTCCEEECSEE--------EESC-CC-CHHHHTTCCEEECCEEEECS--CSSHHHHHHHCCEEECSEEECCCHH-HHHHH
T ss_pred             cccceeECccc--------CCCC-cc-cccCCccccChhhccccccc--ccccccccccccccccccccccccc-ccccc
Confidence            57889999998        5553 33 37889999999999999987  5655566678999999999777663 57788


Q ss_pred             CCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCccc----H----HHHHhccCCCcEEE
Q 048040          101 SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRD----W----FQVVAKLRSLKTFV  158 (178)
Q Consensus       101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~----~----~~~~~~l~~L~~l~  158 (178)
                      ++|+.|++++|++........+..+++|+.|++++|.+.....    .    ...+..+++|+.||
T Consensus       115 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            9999999999998665545568899999999999998755421    0    12367899999987

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.30  E-value=5.1e-12  Score=92.79  Aligned_cols=140  Identities=21%  Similarity=0.157  Sum_probs=107.6

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCcc-chhccC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV-PRTLRN   99 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~   99 (178)
                      ..++.++++++        .+.. +|..  .+++|+.|++++|..... .+..+..++.++.|++++|.+..+ +..+..
T Consensus       150 ~~L~~l~l~~n--------~l~~-l~~~--~~~~L~~L~l~~n~~~~~-~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~  217 (305)
T d1xkua_         150 KKLSYIRIADT--------NITT-IPQG--LPPSLTELHLDGNKITKV-DAASLKGLNNLAKLGLSFNSISAVDNGSLAN  217 (305)
T ss_dssp             TTCCEEECCSS--------CCCS-CCSS--CCTTCSEEECTTSCCCEE-CTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred             cccCccccccC--------Cccc-cCcc--cCCccCEEECCCCcCCCC-ChhHhhccccccccccccccccccccccccc
Confidence            56788999888        4432 3332  357899999999999876 678889999999999999977666 457788


Q ss_pred             CCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccH----HHHHhccCCCcEEEecCCCCC--CCCCcccc
Q 048040          100 FSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDW----FQVVAKLRSLKTFVLRSCALP--PINPSFIC  173 (178)
Q Consensus       100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~----~~~~~~l~~L~~l~l~~n~~~--~~~~~~~~  173 (178)
                      +++|+.|++++|++...+  ..+..+++|++|++++|+|+..+..    ......+++|+.+++++|++.  ...|..|.
T Consensus       218 l~~L~~L~L~~N~L~~lp--~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~  295 (305)
T d1xkua_         218 TPHLRELHLNNNKLVKVP--GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR  295 (305)
T ss_dssp             STTCCEEECCSSCCSSCC--TTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred             cccceeeecccccccccc--cccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhc
Confidence            999999999999987664  3578899999999999999887420    112345678999999999876  35555544


Q ss_pred             c
Q 048040          174 G  174 (178)
Q Consensus       174 ~  174 (178)
                      -
T Consensus       296 ~  296 (305)
T d1xkua_         296 C  296 (305)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.2e-11  Score=87.73  Aligned_cols=125  Identities=19%  Similarity=0.273  Sum_probs=83.8

Q ss_pred             eeeeeeeecCC---------CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCC
Q 048040            9 CKWRGVHCRNT---------TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSK   79 (178)
Q Consensus         9 c~~~~~~~~~~---------~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~   79 (178)
                      |....+.|...         ...++.|++++|        .+....+..|.++++|++|++++|.+...-.+..|..++.
T Consensus         8 C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n--------~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~   79 (242)
T d1xwdc1           8 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLT--------KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK   79 (242)
T ss_dssp             ECSSEEEEESCSCSSCCSCSCSCCSEEEEESC--------CCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTT
T ss_pred             CcCCEEEEeCCCCCCcCCCCCCCCCEEECcCC--------cCCccChhHhhccchhhhhhhccccccceeeccccccccc
Confidence            45556666532         146899999999        6665445578899999999999999876312456788899


Q ss_pred             CcEEeccC-CCCCcc-chhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCc
Q 048040           80 LRYLNLSC-GAPLEV-PRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKS  141 (178)
Q Consensus        80 L~~L~l~~-~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~  141 (178)
                      ++++.+.. +.+... +..+..+++|+.+++.++++...+....+..+..+..+...++.+...
T Consensus        80 l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i  143 (242)
T d1xwdc1          80 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI  143 (242)
T ss_dssp             CCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEE
T ss_pred             cccccccccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccc
Confidence            99998765 355444 456788999999999999875443322233334444444444444333

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=3.5e-11  Score=80.16  Aligned_cols=105  Identities=20%  Similarity=0.148  Sum_probs=87.0

Q ss_pred             CCEEEccCCCCCCCCchhhhcccCCCcEEeccCC-CCCccch-hccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEe
Q 048040           55 LRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCG-APLEVPR-TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLD  132 (178)
Q Consensus        55 L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  132 (178)
                      ...++.+++.+..  .|..+..+++++.|++.++ .+..++. .|..+++|+.|++++|++.... +..+..+++|++|+
T Consensus        10 ~~~l~c~~~~~~~--~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L~   86 (156)
T d2ifga3          10 SSGLRCTRDGALD--SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSCEECCSSCCCT--TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEE
T ss_pred             CCeEEecCCCCcc--CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcc-ccccccccccccee
Confidence            3557888888877  6788899999999999876 6887754 7899999999999999987665 34588899999999


Q ss_pred             ccCCCCCCcccHHHHHhccCCCcEEEecCCCCC
Q 048040          133 LSYINLTKSRDWFQVVAKLRSLKTFVLRSCALP  165 (178)
Q Consensus       133 l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~  165 (178)
                      +++|.++..+.  ..+ ....|+.|++++|++.
T Consensus        87 Ls~N~l~~l~~--~~~-~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          87 LSFNALESLSW--KTV-QGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCSSCCSCCCS--TTT-CSCCCCEEECCSSCCC
T ss_pred             ccCCCCcccCh--hhh-ccccccccccCCCccc
Confidence            99999998864  233 4457999999999986

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=4.7e-11  Score=87.02  Aligned_cols=132  Identities=27%  Similarity=0.266  Sum_probs=65.3

Q ss_pred             cccccchhhhhCCCCCCEEEccCC-CCCCCCchhhhcccCCCcEEeccCC-CCCc--cchhcc-CCCCCcEEEeeCCc--
Q 048040           40 FLKGTISPALLKLHDLRHLDLSNN-DFGGSPIPEFIGSLSKLRYLNLSCG-APLE--VPRTLR-NFSGLEYLNLENSH--  112 (178)
Q Consensus        40 ~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~--~~~~~~-~l~~L~~L~l~~n~--  112 (178)
                      .+.+..+..+..+++|+.|++++| .+++..+...+..+++|++|++++| .+..  +...+. ..+.|+.|++.++.  
T Consensus        82 ~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  161 (284)
T d2astb2          82 RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN  161 (284)
T ss_dssp             BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGG
T ss_pred             CCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccc
Confidence            444444555556666666666664 3443212233345566666666655 2221  111121 23456666665542  


Q ss_pred             cccCCchHHHhccCCCCEEeccCCC-CCCcccHHHHHhccCCCcEEEecCC-CCCCCCCcccc
Q 048040          113 LFSVGSLEWLSHLSSLRHLDLSYIN-LTKSRDWFQVVAKLRSLKTFVLRSC-ALPPINPSFIC  173 (178)
Q Consensus       113 l~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~~l~~L~~l~l~~n-~~~~~~~~~~~  173 (178)
                      +...........+++|++|+++++. +++..  ...+.++++|++|+++++ .++......++
T Consensus       162 i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~--~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~  222 (284)
T d2astb2         162 LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC--FQEFFQLNYLQHLSLSRCYDIIPETLLELG  222 (284)
T ss_dssp             SCHHHHHHHHHHCTTCSEEECTTCTTCCGGG--GGGGGGCTTCCEEECTTCTTCCGGGGGGGG
T ss_pred             cccccccccccccccccccccccccCCCchh--hhhhcccCcCCEEECCCCCCCChHHHHHHh
Confidence            2112222233556777777777653 44332  235566777777777764 45443333333

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.3e-10  Score=82.29  Aligned_cols=152  Identities=14%  Similarity=0.062  Sum_probs=93.1

Q ss_pred             CCeeEEEecCCccc------------------ccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcE
Q 048040           21 GHVKVLNLRTSDYE------------------FARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRY   82 (178)
Q Consensus        21 ~~l~~l~l~~~~~~------------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~   82 (178)
                      ..++.|++++|.+.                  ....+.+....+..+.++++|+.+++++|.+...+....+..+..+..
T Consensus        53 ~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~  132 (242)
T d1xwdc1          53 GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL  132 (242)
T ss_dssp             TTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEE
T ss_pred             chhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccchhhhccccccccccccccccc
Confidence            57899999988542                  011223333344455666777777777776654312223334444444


Q ss_pred             EeccCCCCCccch-hccCC-CCCcEEEeeCCccccCCchHHHhccCCCCEE-eccCCCCCCcccHHHHHhccCCCcEEEe
Q 048040           83 LNLSCGAPLEVPR-TLRNF-SGLEYLNLENSHLFSVGSLEWLSHLSSLRHL-DLSYINLTKSRDWFQVVAKLRSLKTFVL  159 (178)
Q Consensus        83 L~l~~~~~~~~~~-~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L-~l~~n~i~~~~~~~~~~~~l~~L~~l~l  159 (178)
                      +...++.+..++. .+..+ ..++.+++.+|++......  .....+++.+ ++.+|.++..+.  ..+.++++|++|++
T Consensus       133 ~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~--~~~~~~l~~~~~l~~n~l~~l~~--~~f~~l~~L~~L~L  208 (242)
T d1xwdc1         133 DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNC--AFNGTQLDELNLSDNNNLEELPN--DVFHGASGPVILDI  208 (242)
T ss_dssp             EEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTT--TTTTCCEEEEECTTCTTCCCCCT--TTTTTSCCCSEEEC
T ss_pred             ccccccccccccccccccccccceeeecccccccccccc--cccchhhhccccccccccccccH--HHhcCCCCCCEEEC
Confidence            4444444444432 34444 3677888888887554421  2334555444 567788888763  46788999999999


Q ss_pred             cCCCCCCCCCccccccc
Q 048040          160 RSCALPPINPSFICGWE  176 (178)
Q Consensus       160 ~~n~~~~~~~~~~~~l~  176 (178)
                      ++|+++...+..|..++
T Consensus       209 s~N~l~~l~~~~~~~l~  225 (242)
T d1xwdc1         209 SRTRIHSLPSYGLENLK  225 (242)
T ss_dssp             TTSCCCCCCSSSCTTCC
T ss_pred             CCCcCCccCHHHHcCCc
Confidence            99999977777776654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=8.8e-11  Score=85.53  Aligned_cols=145  Identities=22%  Similarity=0.167  Sum_probs=105.7

Q ss_pred             CCeeEEEecCCccccccccccccc-chhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCC-CCCcc--chh
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGT-ISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCG-APLEV--PRT   96 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~--~~~   96 (178)
                      ..+++||++++        .+... +...+...++|++|.+++|.+++. .+..+..+++|++|++++| .++..  ..-
T Consensus        46 ~~L~~LdLs~~--------~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~-~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l  116 (284)
T d2astb2          46 FRVQHMDLSNS--------VIEVSTLHGILSQCSKLQNLSLEGLRLSDP-IVNTLAKNSNLVRLNLSGCSGFSEFALQTL  116 (284)
T ss_dssp             BCCCEEECTTC--------EECHHHHHHHHTTBCCCSEEECTTCBCCHH-HHHHHTTCTTCSEEECTTCBSCCHHHHHHH
T ss_pred             CCCCEEECCCC--------ccCHHHHHHHHHhCCCcccccccccCCCcH-HHHHHhcCCCCcCccccccccccccccchh
Confidence            56899999998        55543 445678899999999999998875 6788889999999999997 55532  223


Q ss_pred             ccCCCCCcEEEeeCCc-cccCCchHHHhc-cCCCCEEeccCCC--CCCcccHHHHHhccCCCcEEEecCC-CCCCCCCcc
Q 048040           97 LRNFSGLEYLNLENSH-LFSVGSLEWLSH-LSSLRHLDLSYIN--LTKSRDWFQVVAKLRSLKTFVLRSC-ALPPINPSF  171 (178)
Q Consensus        97 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~~-l~~L~~L~l~~n~--i~~~~~~~~~~~~l~~L~~l~l~~n-~~~~~~~~~  171 (178)
                      +..+++|+.|++++|. +........+.. .++|+.|++++..  +++.. +...+.++++|++|++++| .++...+..
T Consensus       117 ~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~-l~~l~~~~~~L~~L~L~~~~~itd~~~~~  195 (284)
T d2astb2         117 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD-LSTLVRRCPNLVHLDLSDSVMLKNDCFQE  195 (284)
T ss_dssp             HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHH-HHHHHHHCTTCSEEECTTCTTCCGGGGGG
T ss_pred             hHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccc-ccccccccccccccccccccCCCchhhhh
Confidence            4578999999999975 433332233444 4789999999753  44432 3455678999999999986 466555555


Q ss_pred             cccc
Q 048040          172 ICGW  175 (178)
Q Consensus       172 ~~~l  175 (178)
                      +..+
T Consensus       196 l~~~  199 (284)
T d2astb2         196 FFQL  199 (284)
T ss_dssp             GGGC
T ss_pred             hccc
Confidence            5544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.80  E-value=4.7e-09  Score=77.92  Aligned_cols=121  Identities=18%  Similarity=0.221  Sum_probs=83.7

Q ss_pred             hhhhhCCCCCCEEEccCCCCCCCC----chhhhcccCCCcEEeccCCCCCc-----cchhccCCCCCcEEEeeCCccccC
Q 048040           46 SPALLKLHDLRHLDLSNNDFGGSP----IPEFIGSLSKLRYLNLSCGAPLE-----VPRTLRNFSGLEYLNLENSHLFSV  116 (178)
Q Consensus        46 ~~~l~~l~~L~~L~l~~n~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~n~l~~~  116 (178)
                      ...+.....|+.|+++.|.+....    +...+...++|+.|++++|.++.     +...+...++|+.|++++|.+.+.
T Consensus       179 ~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~  258 (344)
T d2ca6a1         179 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR  258 (344)
T ss_dssp             HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred             cchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCch
Confidence            344566788999999999887421    22345677889999999886543     334567788899999999987544


Q ss_pred             CchH---HHhc--cCCCCEEeccCCCCCCc--ccHHHHHh-ccCCCcEEEecCCCCCC
Q 048040          117 GSLE---WLSH--LSSLRHLDLSYINLTKS--RDWFQVVA-KLRSLKTFVLRSCALPP  166 (178)
Q Consensus       117 ~~~~---~~~~--l~~L~~L~l~~n~i~~~--~~~~~~~~-~l~~L~~l~l~~n~~~~  166 (178)
                      +...   .+..  .+.|++|++++|.++..  ..+...+. +.+.|+.|++++|.+..
T Consensus       259 g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         259 GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             hhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            3222   1222  35689999999988764  22334443 67889999999998864

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=2.2e-09  Score=81.66  Aligned_cols=112  Identities=21%  Similarity=0.226  Sum_probs=79.9

Q ss_pred             CeeEEEecCCccccccccccccc-chhhhhCCCCCCEEEccCCCCCCCC---chhhhcccCCCcEEeccCCCCCcc----
Q 048040           22 HVKVLNLRTSDYEFARRKFLKGT-ISPALLKLHDLRHLDLSNNDFGGSP---IPEFIGSLSKLRYLNLSCGAPLEV----   93 (178)
Q Consensus        22 ~l~~l~l~~~~~~~~~~~~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~----   93 (178)
                      .++.||++++        .+++. +...+..++++++|+|++|.+++..   +...+..+++|++|++++|.++..    
T Consensus         3 ~l~~ld~~~~--------~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~   74 (460)
T d1z7xw1           3 DIQSLDIQCE--------ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHC   74 (460)
T ss_dssp             EEEEEEEESC--------CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHH
T ss_pred             CCCEEEeeCC--------cCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHH
Confidence            5789999999        55542 2334566789999999999987521   345567889999999999866432    


Q ss_pred             -chhcc-CCCCCcEEEeeCCccccCCc---hHHHhccCCCCEEeccCCCCCCc
Q 048040           94 -PRTLR-NFSGLEYLNLENSHLFSVGS---LEWLSHLSSLRHLDLSYINLTKS  141 (178)
Q Consensus        94 -~~~~~-~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~i~~~  141 (178)
                       ...+. ...+|+.|++++|++.....   ...+..+++|++|++++|.+++.
T Consensus        75 l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~  127 (460)
T d1z7xw1          75 VLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA  127 (460)
T ss_dssp             HHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH
T ss_pred             HHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhh
Confidence             22222 23579999999999855432   23356678899999999988765

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.74  E-value=2.6e-08  Score=73.22  Aligned_cols=116  Identities=23%  Similarity=0.216  Sum_probs=83.1

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNF  100 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l  100 (178)
                      ..+++||++++        .++ .+|+   ..++|++|++++|.++.  +|..   ..+|+.|++.+|.+..++.-   .
T Consensus        38 ~~l~~LdLs~~--------~L~-~lp~---~~~~L~~L~Ls~N~l~~--lp~~---~~~L~~L~l~~n~l~~l~~l---p   97 (353)
T d1jl5a_          38 RQAHELELNNL--------GLS-SLPE---LPPHLESLVASCNSLTE--LPEL---PQSLKSLLVDNNNLKALSDL---P   97 (353)
T ss_dssp             HTCSEEECTTS--------CCS-CCCS---CCTTCSEEECCSSCCSS--CCCC---CTTCCEEECCSSCCSCCCSC---C
T ss_pred             cCCCEEEeCCC--------CCC-CCCC---CCCCCCEEECCCCCCcc--cccc---hhhhhhhhhhhcccchhhhh---c
Confidence            46789999998        555 3553   34688999999999986  5654   35788889988866655431   1


Q ss_pred             CCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCC
Q 048040          101 SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALP  165 (178)
Q Consensus       101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~  165 (178)
                      +.|++|++++|.+...+.   .+.+++|++++++++.+...+.      ....+..+.+..+...
T Consensus        98 ~~L~~L~L~~n~l~~lp~---~~~l~~L~~L~l~~~~~~~~~~------~~~~l~~l~~~~~~~~  153 (353)
T d1jl5a_          98 PLLEYLGVSNNQLEKLPE---LQNSSFLKIIDVDNNSLKKLPD------LPPSLEFIAAGNNQLE  153 (353)
T ss_dssp             TTCCEEECCSSCCSSCCC---CTTCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCS
T ss_pred             cccccccccccccccccc---hhhhccceeecccccccccccc------ccccccchhhcccccc
Confidence            468999999999866542   5778899999999998877653      3456666766655443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.72  E-value=1.4e-08  Score=75.35  Aligned_cols=114  Identities=18%  Similarity=0.152  Sum_probs=59.7

Q ss_pred             CCCCCEEEccCCCCCCCC---chhhhcccCCCcEEeccCCCCCc------cchhccCCCCCcEEEeeCCccccCC---ch
Q 048040           52 LHDLRHLDLSNNDFGGSP---IPEFIGSLSKLRYLNLSCGAPLE------VPRTLRNFSGLEYLNLENSHLFSVG---SL  119 (178)
Q Consensus        52 l~~L~~L~l~~n~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~------~~~~~~~l~~L~~L~l~~n~l~~~~---~~  119 (178)
                      ...|+.+.+++|.+....   +...+.....++.+++++|.+..      +.+.+...++|+.|++++|.+....   ..
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~  236 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  236 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc
Confidence            344555555555554320   12234455666667666664432      1223455666777777776653322   12


Q ss_pred             HHHhccCCCCEEeccCCCCCCcc--cHHHHHhc--cCCCcEEEecCCCCC
Q 048040          120 EWLSHLSSLRHLDLSYINLTKSR--DWFQVVAK--LRSLKTFVLRSCALP  165 (178)
Q Consensus       120 ~~~~~l~~L~~L~l~~n~i~~~~--~~~~~~~~--l~~L~~l~l~~n~~~  165 (178)
                      ..+..+++|++|++++|.+++..  .+...+..  .+.|++|++++|.+.
T Consensus       237 ~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         237 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             ccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCC
Confidence            23455666777777777765542  22233332  245677777777654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.64  E-value=2.4e-07  Score=67.91  Aligned_cols=118  Identities=20%  Similarity=0.262  Sum_probs=57.5

Q ss_pred             CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCC
Q 048040           21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNF  100 (178)
Q Consensus        21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l  100 (178)
                      ++++.|++++|        .++ ++|..   +.+|+.|++++|.++.  ++..   .+.|++|++++|.+..+|. +..+
T Consensus        58 ~~L~~L~Ls~N--------~l~-~lp~~---~~~L~~L~l~~n~l~~--l~~l---p~~L~~L~L~~n~l~~lp~-~~~l  119 (353)
T d1jl5a_          58 PHLESLVASCN--------SLT-ELPEL---PQSLKSLLVDNNNLKA--LSDL---PPLLEYLGVSNNQLEKLPE-LQNS  119 (353)
T ss_dssp             TTCSEEECCSS--------CCS-SCCCC---CTTCCEEECCSSCCSC--CCSC---CTTCCEEECCSSCCSSCCC-CTTC
T ss_pred             CCCCEEECCCC--------CCc-ccccc---hhhhhhhhhhhcccch--hhhh---ccccccccccccccccccc-hhhh
Confidence            45566666665        333 23321   3455666666665554  2211   1235666666665555543 3455


Q ss_pred             CCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCC
Q 048040          101 SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALP  165 (178)
Q Consensus       101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~  165 (178)
                      ++|+.+++.++.+...+     .....+..+.+..+......    .+..++.++.+.+..|...
T Consensus       120 ~~L~~L~l~~~~~~~~~-----~~~~~l~~l~~~~~~~~~~~----~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         120 SFLKIIDVDNNSLKKLP-----DLPPSLEFIAAGNNQLEELP----ELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             TTCCEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSSCC----CCTTCTTCCEEECCSSCCS
T ss_pred             ccceeeccccccccccc-----cccccccchhhccccccccc----cccccccceeccccccccc
Confidence            66666666655543222     12234455555444443332    2344555566666555544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=4e-09  Score=70.33  Aligned_cols=85  Identities=20%  Similarity=0.167  Sum_probs=54.7

Q ss_pred             hhcccCCCcEEeccCCCCCcc---chhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCccc-----H
Q 048040           73 FIGSLSKLRYLNLSCGAPLEV---PRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRD-----W  144 (178)
Q Consensus        73 ~l~~l~~L~~L~l~~~~~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-----~  144 (178)
                      ....++.|++|++++|.+..+   +..+..+++|+.|++++|.+.+......++ ..+|+++++.+|.+.....     .
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~-~~~L~~L~L~~Npl~~~~~~~~~y~  138 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK-GLKLEELWLDGNSLSDTFRDQSTYI  138 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHT-TCCCSSCCCTTSTTSSSSSSHHHHH
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhh-ccccceeecCCCCcCcCcccchhHH
Confidence            344677777777777765544   234556777888888888876655444333 3468888888888765411     1


Q ss_pred             HHHHhccCCCcEEE
Q 048040          145 FQVVAKLRSLKTFV  158 (178)
Q Consensus       145 ~~~~~~l~~L~~l~  158 (178)
                      ...+..+|+|+.||
T Consensus       139 ~~i~~~~P~L~~LD  152 (162)
T d1koha1         139 SAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHTTSTTCCEET
T ss_pred             HHHHHHCCCCCEEC
Confidence            23456778888776

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=1.4e-07  Score=71.51  Aligned_cols=113  Identities=21%  Similarity=0.108  Sum_probs=55.8

Q ss_pred             CCCCEEEccCCCCCCCCchh----hhcccCCCcEEeccCCCCCc-----cchhcc-CCCCCcEEEeeCCccccCC---ch
Q 048040           53 HDLRHLDLSNNDFGGSPIPE----FIGSLSKLRYLNLSCGAPLE-----VPRTLR-NFSGLEYLNLENSHLFSVG---SL  119 (178)
Q Consensus        53 ~~L~~L~l~~n~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~-----~~~~~~-~l~~L~~L~l~~n~l~~~~---~~  119 (178)
                      ..|+.+.++++.++.. ...    .+.....|++|++++|.++.     +++.+. ..+.|+.|++++|.+....   ..
T Consensus       312 ~~L~~l~l~~~~l~~~-~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~  390 (460)
T d1z7xw1         312 CQLESLWVKSCSFTAA-CCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA  390 (460)
T ss_dssp             CCCCEEECTTSCCBGG-GHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred             cccccccccccchhhh-hhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHH
Confidence            4566666666665542 222    22344456666666664432     222232 3445666666666653322   11


Q ss_pred             HHHhccCCCCEEeccCCCCCCcc--cHHHHHhcc-CCCcEEEecCCCCCC
Q 048040          120 EWLSHLSSLRHLDLSYINLTKSR--DWFQVVAKL-RSLKTFVLRSCALPP  166 (178)
Q Consensus       120 ~~~~~l~~L~~L~l~~n~i~~~~--~~~~~~~~l-~~L~~l~l~~n~~~~  166 (178)
                      ..+..+++|++|++++|.|++..  .+...+... ..|+.+++.++.+..
T Consensus       391 ~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         391 ATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             HHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             HHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCH
Confidence            22444566666666666665432  112222222 256666666666553

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=2.9e-08  Score=66.02  Aligned_cols=72  Identities=22%  Similarity=0.259  Sum_probs=57.5

Q ss_pred             hccCCCCCcEEEeeCCccccCCc-hHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCC
Q 048040           96 TLRNFSGLEYLNLENSHLFSVGS-LEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINP  169 (178)
Q Consensus        96 ~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  169 (178)
                      ....++.|+.|++++|++..... ...+..+++|+.|++++|.|+..++ ...+. ...|+.+++.+|++.....
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~-l~~l~-~~~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE-LDKIK-GLKLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGG-HHHHT-TCCCSSCCCTTSTTSSSSS
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchh-hhhhh-ccccceeecCCCCcCcCcc
Confidence            44578999999999999977653 3557889999999999999999875 33444 4579999999999986443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.07  E-value=6.5e-06  Score=54.52  Aligned_cols=111  Identities=14%  Similarity=0.078  Sum_probs=54.3

Q ss_pred             CCCCCEEEccCC-CCCCCC---chhhhcccCCCcEEeccCCCCCc-----cchhccCCCCCcEEEeeCCccccCCchH--
Q 048040           52 LHDLRHLDLSNN-DFGGSP---IPEFIGSLSKLRYLNLSCGAPLE-----VPRTLRNFSGLEYLNLENSHLFSVGSLE--  120 (178)
Q Consensus        52 l~~L~~L~l~~n-~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~--  120 (178)
                      .++|+.|+|+++ .++...   +...+...+.|+.|++++|.++.     +...+...+.|+.|++++|.+...+...  
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            455555555543 233210   12233444555555555553331     1223334455666666666653332221  


Q ss_pred             -HHhccCCCCEEeccCCCCCCc-----ccHHHHHhccCCCcEEEecCC
Q 048040          121 -WLSHLSSLRHLDLSYINLTKS-----RDWFQVVAKLRSLKTFVLRSC  162 (178)
Q Consensus       121 -~~~~l~~L~~L~l~~n~i~~~-----~~~~~~~~~l~~L~~l~l~~n  162 (178)
                       .+...+.|++|++++|.+...     ..+...+...+.|+.|+++.+
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence             233345577777776654432     223455556667777776554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.94  E-value=3.7e-05  Score=50.73  Aligned_cols=112  Identities=16%  Similarity=0.216  Sum_probs=80.8

Q ss_pred             CCCeeEEEecCCcccccccccccc----cchhhhhCCCCCCEEEccCCCCCCC---CchhhhcccCCCcEEeccCCCCCc
Q 048040           20 TGHVKVLNLRTSDYEFARRKFLKG----TISPALLKLHDLRHLDLSNNDFGGS---PIPEFIGSLSKLRYLNLSCGAPLE   92 (178)
Q Consensus        20 ~~~l~~l~l~~~~~~~~~~~~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~---~~~~~l~~l~~L~~L~l~~~~~~~   92 (178)
                      .+.+++|+++++.       .+..    .+-..+.....|+.|++++|.+.+.   .+...+...+.|+.|++++|.++.
T Consensus        14 ~~~L~~L~L~~~~-------~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~   86 (167)
T d1pgva_          14 DTDLKEVNINNMK-------RVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP   86 (167)
T ss_dssp             CSSCCEEECTTCC-------SSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             CCCCcEEEeCCCC-------CCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcch
Confidence            4789999998752       2332    2345677888999999999999742   144567778899999999996653


Q ss_pred             -----cchhccCCCCCcEEEeeCCccccCC------chHHHhccCCCCEEeccCCCC
Q 048040           93 -----VPRTLRNFSGLEYLNLENSHLFSVG------SLEWLSHLSSLRHLDLSYINL  138 (178)
Q Consensus        93 -----~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~~l~~L~~L~l~~n~i  138 (178)
                           +...+..-+.|+.|++.+|......      ....+...++|+.|+++.+..
T Consensus        87 ~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          87 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence                 2345677788999999988753332      233455668899999977643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.86  E-value=9e-06  Score=53.64  Aligned_cols=117  Identities=18%  Similarity=0.173  Sum_probs=62.2

Q ss_pred             hhhhCCCCCCEEEccC-CCCCCCC---chhhhcccCCCcEEeccCCCCCc-----cchhccCCCCCcEEEeeCCccccCC
Q 048040           47 PALLKLHDLRHLDLSN-NDFGGSP---IPEFIGSLSKLRYLNLSCGAPLE-----VPRTLRNFSGLEYLNLENSHLFSVG  117 (178)
Q Consensus        47 ~~l~~l~~L~~L~l~~-n~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~  117 (178)
                      ....+.++|+.|.+++ +.++...   +...+...++|++|++++|.++.     +...+.....++.+++.+|.+....
T Consensus        11 ~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g   90 (166)
T d1io0a_          11 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG   90 (166)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchh
Confidence            3344556666666665 3344321   22334455666666666664432     1123344566777777776653332


Q ss_pred             ch---HHHhccCCCCEEec--cCCCCCCc--ccHHHHHhccCCCcEEEecCCC
Q 048040          118 SL---EWLSHLSSLRHLDL--SYINLTKS--RDWFQVVAKLRSLKTFVLRSCA  163 (178)
Q Consensus       118 ~~---~~~~~l~~L~~L~l--~~n~i~~~--~~~~~~~~~l~~L~~l~l~~n~  163 (178)
                      ..   ..+...++|+.+++  ++|.+.+.  ..++..+...+.|+.|+++.+.
T Consensus        91 ~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          91 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            22   22444566776544  34555443  2345566677778888776553

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.68  E-value=0.0022  Score=41.60  Aligned_cols=93  Identities=14%  Similarity=0.070  Sum_probs=66.1

Q ss_pred             hhcccCCCcEEeccCC-CCCc-----cchhccCCCCCcEEEeeCCccccCCc---hHHHhccCCCCEEeccCCCCCCc--
Q 048040           73 FIGSLSKLRYLNLSCG-APLE-----VPRTLRNFSGLEYLNLENSHLFSVGS---LEWLSHLSSLRHLDLSYINLTKS--  141 (178)
Q Consensus        73 ~l~~l~~L~~L~l~~~-~~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~i~~~--  141 (178)
                      .....+.|++|+++++ .++.     +...+...+.|+.|++++|.+.....   ...+...++++.+++++|.+...  
T Consensus        12 ~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~   91 (166)
T d1io0a_          12 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI   91 (166)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhH
Confidence            3456689999999874 4442     23456678999999999998744322   23356678999999999998766  


Q ss_pred             ccHHHHHhccCCCcEEEec--CCCCC
Q 048040          142 RDWFQVVAKLRSLKTFVLR--SCALP  165 (178)
Q Consensus       142 ~~~~~~~~~l~~L~~l~l~--~n~~~  165 (178)
                      ..+...+...+.|+.+++.  +|.+.
T Consensus        92 ~~l~~~l~~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          92 LALVEALQSNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHHHHhCccccEEeeccCCCcCc
Confidence            3345666778889987775  45554