Citrus Sinensis ID: 048042

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
MVISDDTKTSSENGSEIDRERKVFDDTKAGVKGLVDAGVVNIPRIFIRQPEELAQELTTHRTKLQLPVVDLDGIKDNKLEDIVDQVRAASETWGFFKVINYGVSLNLIQEMIEGVHKFNEQDVEVISNDKLKSVDYRVVPNVHATARIVVACFFTGHATKAQKPFGPIKELISEENPPVYRQFLVEEYMSKCFSRELQSKSIGLEQFKL
ccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHccccccccccEEEccccccccHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHHHHHcccHHHHHcccccccccccccccccccEEEEEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHcHHHHHccccccccc
cccccccHccccccccHHHHHHHccccHHccHcHHHccccccccHEEcccccccccccccccccEEEEEEccccccHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHccccEEEEcccccEEEEEEcccccccccHHHHHHcccccccccHccccHHHHHcccccHHHHHccHHHHHHHHHHccccccccccccccc
mvisddtktssengseidrerkvfddtkaGVKGLVDagvvniprifirQPEELAQELTThrtklqlpvvdldgikdnkleDIVDQVRAASETWGFFKVINYGVSLNLIQEMIEGVHKFNEQDVEVisndklksvdyrvvpnvHATARIVVACFftghatkaqkpfgpikeliseenppvYRQFLVEEYMSKCfsrelqsksigleqfkl
mvisddtktssengseidrerkvfddtkagvkglvdagvvnipRIFIRQPEELAQELtthrtklqlpvvdldgikdnKLEDIVDQVRAASETWGFFKVINYGVSLNLIQEMIEGVHKFNEQDVEVISNDKLKSVDYRVVPNVHATARIVVACFFTGHATKAQKPFGPIKELISEENPPVYRQFLVEEYMSKCFSrelqsksigleqfkl
MVISDDTKTSSENGSEIDRERKVFDDTKAGVKGLVDAGVVNIPRIFIRQPEELAQELTTHRTKLQLPVVDLDGIKDNKLEDIVDQVRAASETWGFFKVINYGVSLNLIQEMIEGVHKFNEQDVEVISNDKLKSVDYRVVPNVHATARIVVACFFTGHATKAQKPFGPIKELISEENPPVYRQFLVEEYMSKCFSRELQSKSIGLEQFKL
************************DDTKAGVKGLVDAGVVNIPRIFIRQPEELAQELTTHRTKLQLPVVDLDGIKDNKLEDIVDQVRAASETWGFFKVINYGVSLNLIQEMIEGVHKFNEQDVEVISNDKLKSVDYRVVPNVHATARIVVACFFTGHATKAQKPFGPIKELISEENPPVYRQFLVEEYMSKCFS***************
*********************KVFDDTKAGVKGLVDAGVVNIPRIFIRQPEE**********KLQLPVVDLDGIKDNKLEDIVDQVRAASETWGFFKVINYGVSLNLIQEMIEGVHKFNEQDVEVISNDKLKSVDYRVVPNVHATARIVVACFFTGHATKAQKPFGPIKELISEENPPVYRQFLVEEYMSKCFSRELQSKSIGLEQFKL
***************EIDRERKVFDDTKAGVKGLVDAGVVNIPRIFIRQPEELAQELTTHRTKLQLPVVDLDGIKDNKLEDIVDQVRAASETWGFFKVINYGVSLNLIQEMIEGVHKFNEQDVEVISNDKLKSVDYRVVPNVHATARIVVACFFTGHATKAQKPFGPIKELISEENPPVYRQFLVEEYMSKCFSRELQSKSIGLEQFKL
*************GSEIDRERKVFDDTKAGVKGLVDAGVVNIPRIFIRQPEELAQELTTHRTKLQLPVVDLDGIKDNKLEDIVDQVRAASETWGFFKVINYGVSLNLIQEMIEGVHKFNEQDVEVISNDKLKSVDYRVVPNVHATARIVVACFFTGHATKAQKPFGPIKELISEENPPVYRQFLVEEYMSKCFSRELQSKSIGL*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVISDDTKTSSENGSEIDRERKVFDDTKAGVKGLVDAGVVNIPRIFIRQPEELAQELTTHRTKLQLPVVDLDGIKDNKLEDIVDQVRAASETWGFFKVINYGVSLNLIQEMIEGVHKFNEQDVEVISNDKLKSVDYRVVPNVHATARIVVACFFTGHATKAQKPFGPIKELISEENPPVYRQFLVEEYMSKCFSRELQSKSIGLEQFKL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query209 2.2.26 [Sep-21-2011]
O04847 401 Deacetoxyvindoline 4-hydr N/A no 0.693 0.361 0.356 6e-24
P10967 363 1-aminocyclopropane-1-car N/A no 0.708 0.407 0.380 1e-23
P93824 360 1-aminocyclopropane-1-car yes no 0.837 0.486 0.349 2e-21
Q84MB3 365 1-aminocyclopropane-1-car no no 0.531 0.304 0.391 3e-20
Q9SKK4 359 Probable 2-oxoacid depend no no 0.679 0.395 0.372 8e-20
Q9LTH8 364 1-aminocyclopropane-1-car no no 0.531 0.304 0.422 3e-19
Q84TC2 374 DIBOA-glucoside dioxygena N/A no 0.583 0.326 0.435 4e-19
Q9LTH7 366 1-aminocyclopropane-1-car no no 0.550 0.314 0.408 5e-19
Q43383 398 1-aminocyclopropane-1-car no no 0.741 0.389 0.333 5e-19
Q8H1S4 369 1-aminocyclopropane-1-car no no 0.478 0.271 0.432 4e-18
>sp|O04847|DV4H_CATRO Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2 Back     alignment and function desciption
 Score =  110 bits (275), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 98/157 (62%), Gaps = 12/157 (7%)

Query: 19  RERKVFDDTKAGVKGLVDAGVVNIPRIFIRQPEELAQ-ELTTHRTKLQLPVVDLDGIKDN 77
           RE K FD+TKAGVKG+VD G+  IPRIFI QP+ L +  +   ++ +++PV++L+G+  N
Sbjct: 43  RELKAFDETKAGVKGIVDTGITKIPRIFIDQPKNLDRISVCRGKSDIKIPVINLNGLSSN 102

Query: 78  K--LEDIVDQVRAASETWGFFKVINYGVSLNLIQEMIEGVHKFNEQDVEV----ISNDK- 130
                +IV+++  ASE +GFF+++N+G+  +++ +M++GV KF+EQD ++     S D+ 
Sbjct: 103 SEIRREIVEKIGEASEKYGFFQIVNHGIPQDVMDKMVDGVRKFHEQDDQIKRQYYSRDRF 162

Query: 131 ----LKSVDYRVVPNVHATARIVVACFFTGHATKAQK 163
               L S +Y ++P +    R  + C    +    Q+
Sbjct: 163 NKNFLYSSNYVLIPGIACNWRDTMECIMNSNQPDPQE 199
Catalyzes the C4-hydroxylation of desacetoxyvindoline.
Catharanthus roseus (taxid: 4058)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 2EC: 0
>sp|P10967|ACCH3_SOLLC 1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1 Back     alignment and function description
>sp|P93824|ACCH6_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 6 OS=Arabidopsis thaliana GN=At1g04350 PE=2 SV=1 Back     alignment and function description
>sp|Q84MB3|ACCH1_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1 Back     alignment and function description
>sp|Q9SKK4|GSL_ARATH Probable 2-oxoacid dependent dioxygenase OS=Arabidopsis thaliana GN=GSL-OH PE=2 SV=1 Back     alignment and function description
>sp|Q9LTH8|ACH11_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 11 OS=Arabidopsis thaliana GN=At5g59530 PE=2 SV=1 Back     alignment and function description
>sp|Q84TC2|BX6_MAIZE DIBOA-glucoside dioxygenase BX6 OS=Zea mays GN=BX6 PE=1 SV=1 Back     alignment and function description
>sp|Q9LTH7|ACH12_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 12 OS=Arabidopsis thaliana GN=At5g59540 PE=2 SV=1 Back     alignment and function description
>sp|Q43383|ACCH5_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 5 OS=Arabidopsis thaliana GN=2A6 PE=2 SV=2 Back     alignment and function description
>sp|Q8H1S4|ACCH3_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 3 OS=Arabidopsis thaliana GN=At1g06650 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query209
147818396 367 hypothetical protein VITISV_000986 [Viti 0.933 0.531 0.390 6e-28
225437842 409 PREDICTED: 1-aminocyclopropane-1-carboxy 0.684 0.349 0.435 4e-26
297744121 368 unnamed protein product [Vitis vinifera] 0.684 0.388 0.435 5e-26
147820925 368 hypothetical protein VITISV_026363 [Viti 0.684 0.388 0.435 6e-26
255576836 363 Desacetoxyvindoline 4-hydroxylase, putat 0.559 0.322 0.504 2e-25
359477716 673 PREDICTED: 1-aminocyclopropane-1-carboxy 0.564 0.175 0.488 1e-24
225433009 364 PREDICTED: 1-aminocyclopropane-1-carboxy 0.880 0.505 0.368 2e-24
224111006 379 predicted protein [Populus trichocarpa] 0.851 0.469 0.395 3e-24
225433017 365 PREDICTED: 1-aminocyclopropane-1-carboxy 0.564 0.323 0.488 4e-24
356536647 383 PREDICTED: 1-aminocyclopropane-1-carboxy 0.866 0.472 0.361 8e-24
>gi|147818396|emb|CAN62402.1| hypothetical protein VITISV_000986 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  129 bits (325), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 84/215 (39%), Positives = 126/215 (58%), Gaps = 20/215 (9%)

Query: 1   MVISDDTKTSSENGSEIDR--ERKVFDDTKAGVKGLVDAGVVNIPRIFIRQPEELAQELT 58
           MV++  +++     ++ DR  E K FD+TKAGVKGLVDAGV  +PRIFI+ P++     T
Sbjct: 1   MVVTSFSESPMATQADCDRLGELKAFDETKAGVKGLVDAGVSQVPRIFIQPPDDF----T 56

Query: 59  THRTKLQLPVVDLDGIKDN--KLEDIVDQVRAASETWGFFKVINYGVSLNLIQEMIEGVH 116
           T  TK   PV+DL  +  +  + ++IVD VR ASETWGFF V+N+G+S+ +++EM +GV 
Sbjct: 57  TGDTKFSFPVIDLQDMNTDPARRKEIVDMVRDASETWGFFNVVNHGISVTVLEEMKDGVR 116

Query: 117 KFNEQDVEVISNDKLKSVDYRVVPNVHATARIVVACFF--TGHATKAQKPFGPIKELISE 174
           +F EQD EV      + ++ +VV N +       A  +  T +   A +P  P      +
Sbjct: 117 RFYEQDTEVKKQYYSRDLERKVVYNSNFDLYKAPAANWRDTFYFLMAPQPPDP------Q 170

Query: 175 ENPPVYRQFLVE---EYMSKCFS-RELQSKSIGLE 205
           E PP +R  L+E   E M   F   EL S+++GL+
Sbjct: 171 ELPPAFRDILIEYKDEVMKLGFKLLELISEALGLK 205

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225437842|ref|XP_002263628.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297744121|emb|CBI37091.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147820925|emb|CAN65048.1| hypothetical protein VITISV_026363 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255576836|ref|XP_002529304.1| Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis] gi|223531228|gb|EEF33073.1| Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359477716|ref|XP_003632012.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 3 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225433009|ref|XP_002284582.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224111006|ref|XP_002315713.1| predicted protein [Populus trichocarpa] gi|222864753|gb|EEF01884.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225433017|ref|XP_002284642.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1 [Vitis vinifera] gi|147807864|emb|CAN66433.1| hypothetical protein VITISV_027452 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356536647|ref|XP_003536848.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query209
TAIR|locus:2018349 360 AT1G04350 [Arabidopsis thalian 0.502 0.291 0.448 5.1e-37
TAIR|locus:2009130 365 AT1G06620 [Arabidopsis thalian 0.521 0.298 0.398 2.5e-36
TAIR|locus:2148403 364 AT5G59530 [Arabidopsis thalian 0.545 0.313 0.441 5.7e-36
TAIR|locus:2148303 366 AT5G59540 [Arabidopsis thalian 0.550 0.314 0.408 2.3e-35
TAIR|locus:2009210 369 AT1G06640 [Arabidopsis thalian 0.555 0.314 0.435 7.5e-35
TAIR|locus:2009175 369 AT1G06650 [Arabidopsis thalian 0.492 0.279 0.434 1.2e-34
TAIR|locus:2824199 366 AT1G06645 [Arabidopsis thalian 0.492 0.281 0.443 5.3e-34
TAIR|locus:2098876 370 AT3G61400 [Arabidopsis thalian 0.559 0.316 0.341 1.1e-31
TAIR|locus:2052781 358 AT2G30830 [Arabidopsis thalian 0.550 0.321 0.403 5.4e-30
TAIR|locus:2176466 362 AT5G43450 [Arabidopsis thalian 0.574 0.331 0.36 1.8e-29
TAIR|locus:2018349 AT1G04350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 249 (92.7 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
 Identities = 48/107 (44%), Positives = 73/107 (68%)

Query:    20 ERKVFDDTKAGVKGLVDAGVVNIPRIFIRQPEELAQELT-THRTKLQLPVVDLDGIKDNK 78
             ERK FD+TK GVKGL+DA +  IPRIF      L+ +      T   +P++D +G+  ++
Sbjct:    11 ERKAFDETKTGVKGLIDAHITEIPRIFCLPQGSLSDKKPFVSTTDFAIPIIDFEGLHVSR 70

Query:    79 LEDIVDQVRAASETWGFFKVINYGVSLNLIQEMIEGVHKFNEQDVEV 125
              EDIV +++ A+  WGFF+VIN+GV LN++QE+ +GV +F+E+  EV
Sbjct:    71 -EDIVGKIKDAASNWGFFQVINHGVPLNVLQEIQDGVRRFHEEAPEV 116
GO:0005737 "cytoplasm" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0015996 "chlorophyll catabolic process" evidence=RCA
TAIR|locus:2009130 AT1G06620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148403 AT5G59530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148303 AT5G59540 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009210 AT1G06640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009175 AT1G06650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2824199 AT1G06645 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2098876 AT3G61400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2052781 AT2G30830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2176466 AT5G43450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00020210001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (375 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query209
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 2e-13
PLN02393 362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 6e-11
PLN02758 361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 8e-10
PLN03178 360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 1e-09
PLN02947 374 PLN02947, PLN02947, oxidoreductase 5e-09
PLN02276 361 PLN02276, PLN02276, gibberellin 20-oxidase 2e-08
PLN02904 357 PLN02904, PLN02904, oxidoreductase 2e-08
PLN02639 337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 2e-07
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 2e-07
PLN02704 335 PLN02704, PLN02704, flavonol synthase 8e-07
PLN02750 345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 1e-06
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 2e-06
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 2e-06
PLN02515 358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 5e-06
PLN02254 358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 5e-06
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 7e-06
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 8e-06
PLN02947374 PLN02947, PLN02947, oxidoreductase 1e-05
PLN02216357 PLN02216, PLN02216, protein SRG1 1e-05
PLN02403 303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 1e-05
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 2e-05
PLN02365 300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 2e-05
COG3491 322 COG3491, PcbC, Isopenicillin N synthase and relate 4e-05
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 6e-05
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 1e-04
PLN02904357 PLN02904, PLN02904, oxidoreductase 2e-04
PLN02912 348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 3e-04
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 5e-04
PLN02997 325 PLN02997, PLN02997, flavonol synthase 0.001
PLN02485 329 PLN02485, PLN02485, oxidoreductase 0.002
PLN02299 321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 0.002
PLN02704335 PLN02704, PLN02704, flavonol synthase 0.004
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information 
 Score = 63.8 bits (156), Expect = 2e-13
 Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 5/67 (7%)

Query: 66  LPVVDLDGIKDNKLEDIVDQVRAASETWGFFKVINYGVSLNLIQEMIEGVHKFNEQDVEV 125
           +PV+DL G  +++   +  ++  A   WGFF+++N+G+   LI  + E   +F    +E 
Sbjct: 1   IPVIDLSGDPEDR-AAVAAELGEACREWGFFQLVNHGIPEELIDRLFEAAREFFALPLE- 58

Query: 126 ISNDKLK 132
              +KLK
Sbjct: 59  ---EKLK 62

This is the highly conserved N-terminal region of proteins with 2-oxoglutarate/Fe(II)-dependent dioxygenase activity. Length = 113
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 209
PLN02904357 oxidoreductase 100.0
PLN02947374 oxidoreductase 100.0
PLN02216357 protein SRG1 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02704335 flavonol synthase 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02997325 flavonol synthase 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 99.98
PTZ00273320 oxidase reductase; Provisional 99.97
PLN02485329 oxidoreductase 99.97
PLN02403303 aminocyclopropanecarboxylate oxidase 99.97
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.97
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.95
COG3491 322 PcbC Isopenicillin N synthase and related dioxygen 99.94
PLN03176120 flavanone-3-hydroxylase; Provisional 99.82
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.73
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.7
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 97.8
>PLN02904 oxidoreductase Back     alignment and domain information 
Probab=100.00  E-value=2.4e-43  Score=317.49  Aligned_cols=182  Identities=25%  Similarity=0.460  Sum_probs=165.1

Q ss_pred             cccccCcchHHHHHCCCCCCCCccccCCCcchhhhcc-cCCCCCCceeeCCCCCCC-cHHHHHHHHHHHHhHcCeeEEee
Q 048042           23 VFDDTKAGVKGLVDAGVVNIPRIFIRQPEELAQELTT-HRTKLQLPVVDLDGIKDN-KLEDIVDQVRAASETWGFFKVIN  100 (209)
Q Consensus        23 ~~~~~~~~v~~l~~~~~~~vP~~yv~p~~~~~~~~~~-~~~~~~IPvIDls~l~~~-~~~~~~~~l~~A~~~~GFF~l~n  100 (209)
                      .++++++||++|+++|..+||++|++|++++|..... ......||+|||+.+.++ .+.+++++|++||++||||||+|
T Consensus         8 ~~~~~~~~~~~l~~~~~~~vp~~~~~~~~~~p~~~~~~~~~~~~iPvIDls~~~~~~~r~~~~~~l~~Ac~~~GFf~v~n   87 (357)
T PLN02904          8 VLDDSFTSAMTLTNSGVPHVPDRYVLPPSQRPMLGSSIGTSTITLPVIDLSLLHDPLLRSCVIHEIEMACKGFGFFQVIN   87 (357)
T ss_pred             hhhccccchHHHHhcCCCCCCHHhCCCchhcccccccccccCCCCCEEECcccCCchhHHHHHHHHHHHHHHCceEEEEe
Confidence            4789999999999999999999999999998754210 112367999999988544 56778999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHhhcccchh--------------------------------------------------------
Q 048042          101 YGVSLNLIQEMIEGVHKFNEQDVE--------------------------------------------------------  124 (209)
Q Consensus       101 HgI~~eli~~~~~~~~~FF~lP~e--------------------------------------------------------  124 (209)
                      |||+.++++++++++++||+||.|                                                        
T Consensus        88 HGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~~~~p~~~~~n~WP~~~p~fr  167 (357)
T PLN02904         88 HGIPSSVVKDALDAATRFFDLPVDEKMLLVSDNVHEPVRYGTSLNHSTDRVHYWRDFIKHYSHPLSKWINLWPSNPPCYK  167 (357)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCHHHHhhhcccCCCCcccccccccccCCCCCCceEEeeeccCCcccccccCcccchHHH
Confidence            999999999999999999999998                                                        


Q ss_pred             --------------------------------------------------------------------------------
Q 048042          125 --------------------------------------------------------------------------------  124 (209)
Q Consensus       125 --------------------------------------------------------------------------------  124 (209)
                                                                                                      
T Consensus       168 ~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YPp~p~~~~~~g~~~HtD~g~lTlL~qd~~GLQ  247 (357)
T PLN02904        168 EKVGKYAEATHVLHKQLIEAISESLGLEKNYLQEEIEEGSQVMAVNCYPACPEPEIALGMPPHSDFGSLTILLQSSQGLQ  247 (357)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCcccEEEeeecCCCCCcccccCCcCccCCCceEEEecCCCeee
Confidence                                                                                            


Q ss_pred             ---------------------------hhcCCcccccccccccCCCCCccceeEeccccCCCCCCCceecCCcccCCCCC
Q 048042          125 ---------------------------VISNDKLKSVDYRVVPNVHATARIVVACFFTGHATKAQKPFGPIKELISEENP  177 (209)
Q Consensus       125 ---------------------------~~sNg~~kS~~HRv~~~~~~~~R~Sia~F~~P~~~~~d~~i~Pl~elv~~~~p  177 (209)
                                                 +||||+|||+.|||+++ ..++||||+||+.|+.   |+.|+|+++|+++++|
T Consensus       248 V~~~~g~Wi~V~p~pgalVVNiGD~Le~~TNG~~kSt~HRVv~~-~~~~R~Si~~F~~p~~---d~~i~Pl~~~v~~~~p  323 (357)
T PLN02904        248 IMDCNKNWVCVPYIEGALIVQLGDQVEVMSNGIYKSVVHRVTVN-KDYKRLSFASLHSLPL---HKKISPAPELVNENKP  323 (357)
T ss_pred             EEeCCCCEEECCCCCCeEEEEccHHHHHHhCCeeeccCCcccCC-CCCCEEEEEEeecCCC---CCeEeCCHHHcCCCCC
Confidence                                       89999999999999998 8899999999999997   9999999999999999


Q ss_pred             CCCCccCHHHHHHHHHhcccCCccccccccCC
Q 048042          178 PVYRQFLVEEYMSKCFSRELQSKSIGLEQFKL  209 (209)
Q Consensus       178 ~~yr~~~~~ey~~~~~~~~~~gk~~~ld~~~i  209 (209)
                      ++|++++++||++.++++.+++++ .++.+++
T Consensus       324 ~~Y~~~~~~ey~~~~~~~~~~~~~-~~~~~~~  354 (357)
T PLN02904        324 AAYGEFSFNDFLDYISSNDITQER-FIDTLKK  354 (357)
T ss_pred             CcCCCCCHHHHHHHHHhcccCcch-HHHHhcc
Confidence            999999999999999999999998 8887764

>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query209
2brt_A 355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 6e-06
1gp5_A 356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 6e-06
1gp4_A 356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 2e-05
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure 
Iteration: 1

 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 58/102 (56%), Gaps = 8/102 (7%)
Query: 31  VKGLVDAGVVNIPRIFIRQPEELA--QELTTHRTK---LQLPVVDLDGIK--DNKL-EDI 82
           V+ L  +G+++IP+ +IR  EEL    ++     K    Q+P +DL  I+  D K+ E+ 
Sbjct: 6   VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 65
Query: 83  VDQVRAASETWGFFKVINYGVSLNLIQEMIEGVHKFNEQDVE 124
           +++++ AS  WG   +IN+G+  +L++ + +   +F    VE
Sbjct: 66  IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVE 107
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query209
1gp6_A 356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 7e-25
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 7e-16
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 2e-19
1w9y_A 319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 7e-18
1dcs_A 311 Deacetoxycephalosporin C synthase; ferrous oxygena 5e-10
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 1e-04
3on7_A 280 Oxidoreductase, iron/ascorbate family; structural 8e-10
3oox_A 312 Putative 2OG-Fe(II) oxygenase family protein; stru 2e-09
1odm_A 331 Isopenicillin N synthase; antibiotic biosynthesis, 9e-09
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 4e-04
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score = 98.9 bits (247), Expect = 7e-25
 Identities = 43/202 (21%), Positives = 82/202 (40%), Gaps = 33/202 (16%)

Query: 31  VKGLVDAGVVNIPRIFIRQPEEL-----AQELTTHRTKLQLPVVDLDGIK---DNKLEDI 82
           V+ L  +G+++IP+ +IR  EEL                Q+P +DL  I+   +   E+ 
Sbjct: 7   VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 66

Query: 83  VDQVRAASETWGFFKVINYGVSLNLIQEMIEGVHKFNEQDVEVISNDKLKSVDYRVVPNV 142
           +++++ AS  WG   +IN+G+  +L++ + +   +F    VE     K K  + +    +
Sbjct: 67  IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEE----KEKYANDQATGKI 122

Query: 143 --HATARIVVA--------CFFTGHATKAQKPFGPIKELISEENPPVYRQFLVEEY---M 189
             + +     A         FF         P       I  + P  Y +    EY   +
Sbjct: 123 QGYGSKLANNASGQLEWEDYFFHLAY-----PEEKRDLSIWPKTPSDYIE-ATSEYAKCL 176

Query: 190 SKCFSR--ELQSKSIGLEQFKL 209
               ++  +  S  +GLE  +L
Sbjct: 177 RLLATKVFKALSVGLGLEPDRL 198
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query209
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 99.95
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 99.94
3on7_A 280 Oxidoreductase, iron/ascorbate family; structural 99.93
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=4.3e-40  Score=294.70  Aligned_cols=171  Identities=26%  Similarity=0.431  Sum_probs=152.4

Q ss_pred             cCcchHHHHHCCCCCCCCccccCCCcchhhhc---cc--CCCCCCceeeCCCCCC--C-cHHHHHHHHHHHHhHcCeeEE
Q 048042           27 TKAGVKGLVDAGVVNIPRIFIRQPEELAQELT---TH--RTKLQLPVVDLDGIKD--N-KLEDIVDQVRAASETWGFFKV   98 (209)
Q Consensus        27 ~~~~v~~l~~~~~~~vP~~yv~p~~~~~~~~~---~~--~~~~~IPvIDls~l~~--~-~~~~~~~~l~~A~~~~GFF~l   98 (209)
                      ++++||+|+++|+.+||++|++|+++++....   ..  .....||+|||+.+.+  + .+.+++++|.+||++||||||
T Consensus         3 ~~~~v~~l~~~~~~~vP~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~v   82 (356)
T 1gp6_A            3 AVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHL   82 (356)
T ss_dssp             CCCCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred             CcccHHHHHhcCCCCCCHHhcCCchhcccccccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEEE
Confidence            45789999999999999999999888765311   00  0124699999999843  2 467799999999999999999


Q ss_pred             eecCCCHHHHHHHHHHHHhhcccchh------------------------------------------------------
Q 048042           99 INYGVSLNLIQEMIEGVHKFNEQDVE------------------------------------------------------  124 (209)
Q Consensus        99 ~nHgI~~eli~~~~~~~~~FF~lP~e------------------------------------------------------  124 (209)
                      +||||+.++++++++.+++||+||.|                                                      
T Consensus        83 ~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP~~~  162 (356)
T 1gp6_A           83 INHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTP  162 (356)
T ss_dssp             ESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSS
T ss_pred             eCCCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecCCccccccccCCCcc
Confidence            99999999999999999999999987                                                      


Q ss_pred             --------------------------------------------------------------------------------
Q 048042          125 --------------------------------------------------------------------------------  124 (209)
Q Consensus       125 --------------------------------------------------------------------------------  124 (209)
                                                                                                      
T Consensus       163 ~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~  242 (356)
T 1gp6_A          163 SDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFIL  242 (356)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEE
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccCCccceeeeeecCCCCCcccccCcCCccCCCeEEEEE
Confidence                                                                                            


Q ss_pred             ----------------------------------hhcCCcccccccccccCCCCCccceeEeccccCCCCCCC-ceecCC
Q 048042          125 ----------------------------------VISNDKLKSVDYRVVPNVHATARIVVACFFTGHATKAQK-PFGPIK  169 (209)
Q Consensus       125 ----------------------------------~~sNg~~kS~~HRv~~~~~~~~R~Sia~F~~P~~~~~d~-~i~Pl~  169 (209)
                                                        +||||+|||+.|||+++ ..++|+|++||++|+.   |+ +|+|++
T Consensus       243 qd~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~~-~~~~R~Sia~F~~P~~---d~~~i~pl~  318 (356)
T 1gp6_A          243 HNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVN-KEKVRISWAVFCEPPK---DKIVLKPLP  318 (356)
T ss_dssp             ECSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCC-SSCCEEEEEEEEECCT---TTCEECCCG
T ss_pred             EcCCCCeEEecCCcEEECcCCCCeEEEEeccHHHHhcCCEeeccCceecCC-CCCCEEEEEEeecCCC---CCcEEeCCh
Confidence                                              89999999999999999 8899999999999997   99 999999


Q ss_pred             cccCCCCCCCCCccCHHHHHHHHHhcccCCcc
Q 048042          170 ELISEENPPVYRQFLVEEYMSKCFSRELQSKS  201 (209)
Q Consensus       170 elv~~~~p~~yr~~~~~ey~~~~~~~~~~gk~  201 (209)
                      +|+++++|++|++++++||+..++..+++||.
T Consensus       319 ~~~~~~~p~~y~~~t~~eyl~~~~~~~~d~~~  350 (356)
T 1gp6_A          319 EMVSVESPAKFPPRTFAQHIEHKLFGKEQEEL  350 (356)
T ss_dssp             GGCCSSSCCSSCCEEHHHHHHHHHHHHHHHHC
T ss_pred             hhcCCCCCccCCCccHHHHHHHHHHhccCcch
Confidence            99999999999999999999999998888874
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 209
d1gp6a_ 349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 7e-19
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 5e-12
d1w9ya1 307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 3e-13
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 1e-12
d1dcsa_ 311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 1e-12
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 7e-04
d1odma_ 329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 4e-10
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 3e-04
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 81.2 bits (199), Expect = 7e-19
 Identities = 27/104 (25%), Positives = 53/104 (50%), Gaps = 8/104 (7%)

Query: 29  AGVKGLVDAGVVNIPRIFIRQPEEL-----AQELTTHRTKLQLPVVDLDGIKDN---KLE 80
             V+ L  +G+++IP+ +IR  EEL                Q+P +DL  I+ +     E
Sbjct: 4   ERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRE 63

Query: 81  DIVDQVRAASETWGFFKVINYGVSLNLIQEMIEGVHKFNEQDVE 124
           + +++++ AS  WG   +IN+G+  +L++ + +   +F    VE
Sbjct: 64  NCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVE 107
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query209
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 99.96
d1dcsa_ 311 Deacetoxycephalosporin C synthase {Streptomyces cl 99.94
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=3.6e-43  Score=308.35  Aligned_cols=163  Identities=27%  Similarity=0.447  Sum_probs=147.4

Q ss_pred             CcchHHHHHCCCCCCCCccccCCCcchhhhc-----ccCCCCCCceeeCCCCCC--C-cHHHHHHHHHHHHhHcCeeEEe
Q 048042           28 KAGVKGLVDAGVVNIPRIFIRQPEELAQELT-----THRTKLQLPVVDLDGIKD--N-KLEDIVDQVRAASETWGFFKVI   99 (209)
Q Consensus        28 ~~~v~~l~~~~~~~vP~~yv~p~~~~~~~~~-----~~~~~~~IPvIDls~l~~--~-~~~~~~~~l~~A~~~~GFF~l~   99 (209)
                      ...||+|+++|+.+||++||||++++|....     ......+||||||+.+.+  + .+++++++|++||++||||||+
T Consensus         3 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~   82 (349)
T d1gp6a_           3 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLI   82 (349)
T ss_dssp             CCCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             CcchHHHHhCCCccCCHhhcCChhhcCCCCccccccccCCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEEEE
Confidence            4579999999999999999999999886521     124567899999999842  2 5778999999999999999999


Q ss_pred             ecCCCHHHHHHHHHHHHhhcccchh-------------------------------------------------------
Q 048042          100 NYGVSLNLIQEMIEGVHKFNEQDVE-------------------------------------------------------  124 (209)
Q Consensus       100 nHgI~~eli~~~~~~~~~FF~lP~e-------------------------------------------------------  124 (209)
                      ||||+.++++++++++++||+||.|                                                       
T Consensus        83 nHGI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~wp~~~~  162 (349)
T d1gp6a_          83 NHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPS  162 (349)
T ss_dssp             SCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSST
T ss_pred             ccCCCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCCccccccccccccccccchhhhhcccccccccccccccccccc
Confidence            9999999999999999999999998                                                       


Q ss_pred             --------------------------------------------------------------------------------
Q 048042          125 --------------------------------------------------------------------------------  124 (209)
Q Consensus       125 --------------------------------------------------------------------------------  124 (209)
                                                                                                      
T Consensus       163 ~f~e~~~~~~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q  242 (349)
T d1gp6a_         163 DYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH  242 (349)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHcCCCHHHHHHHhccccccceeeeecccccccchhhccccccCCCCcceEEEec
Confidence                                                                                            


Q ss_pred             ---------------------------------hhcCCcccccccccccCCCCCccceeEeccccCCCCCCCce-ecCCc
Q 048042          125 ---------------------------------VISNDKLKSVDYRVVPNVHATARIVVACFFTGHATKAQKPF-GPIKE  170 (209)
Q Consensus       125 ---------------------------------~~sNg~~kS~~HRv~~~~~~~~R~Sia~F~~P~~~~~d~~i-~Pl~e  170 (209)
                                                       +||||+|+|+.|||++| ..++|||++||++|+.   |++| +|+++
T Consensus       243 ~~~~GLqv~~~g~W~~V~p~~~a~vVNvGD~l~~~TnG~~~St~HRVv~~-~~~~R~Si~~F~~p~~---d~~i~~pl~~  318 (349)
T d1gp6a_         243 NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVN-KEKVRISWAVFCEPPK---DKIVLKPLPE  318 (349)
T ss_dssp             CSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCC-SSCCEEEEEEEEECCT---TTCEECCCGG
T ss_pred             cCCcceeeecCCceEEccCCCCCeeeeHHhHHHHHhCCCccCcCccccCC-CCCCeEEEEEEecCCC---cceeecCCHH
Confidence                                             89999999999999999 8999999999999996   7765 89999


Q ss_pred             ccCCCCCCCCCccCHHHHHHHHHh
Q 048042          171 LISEENPPVYRQFLVEEYMSKCFS  194 (209)
Q Consensus       171 lv~~~~p~~yr~~~~~ey~~~~~~  194 (209)
                      |+++++|++|++++++||++.++.
T Consensus       319 ~v~~~~p~~y~~~t~~e~~~~rl~  342 (349)
T d1gp6a_         319 MVSVESPAKFPPRTFAQHIEHKLF  342 (349)
T ss_dssp             GCCSSSCCSSCCEEHHHHHHHHHH
T ss_pred             HcCCCCCCCCCCccHHHHHHHHHh
Confidence            999999999999999999998774
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure