Citrus Sinensis ID: 048049


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70-------
MWRLKIGDHRTKNDPYIFSTNNHVGRQIWEFDPDADSPEELAEVEGARLNYFNNRFNVKNSSNLIWQIQVICVIHEH
ccEEEEEcccccccccEEcccccccEEEEEEccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccc
ccEEEEEccccccccEEEEcccccccEEEEEccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccc
mwrlkigdhrtkndpyifstnnhvgrqiwefdpdadspeeLAEVEGARLNYFNnrfnvknssnlIWQIQVICVIHEH
mwrlkigdhrtkndpyifstNNHVGRQIWEFDPDADSPEELAEVEGARLNYFNNrfnvknssnliWQIQVICVIHEH
MWRLKIGDHRTKNDPYIFSTNNHVGRQIWEFDPDADSPEELAEVEGARLNYFNNRFNVKNSSNLIWQIQVICVIHEH
*************DPYIFSTNNHVGRQIWEFD*********AEVEGARLNYFNNRFNVKNSSNLIWQIQVICVIH**
MWRLKI*DHRTKNDPYIFSTNNHVGRQIWEFDPDADSPEELAEVEGARLNYFNNRFNVKNSSNLIWQIQVICV****
MWRLKIGDHRTKNDPYIFSTNNHVGRQIWEFDPDADSPEELAEVEGARLNYFNNRFNVKNSSNLIWQIQVICVIHEH
MWRLKIGDHRTKNDPYIFSTNNHVGRQIWEFDPDADSPEELAEVEGARLNYFNNRFNVKNSSNLIWQIQVICVIH**
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MWRLKIGDHRTKNDPYIFSTNNHVGRQIWEFDPDADSPEELAEVEGARLNYFNNRFNVKNSSNLIWQIQVICVIHEH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query77 2.2.26 [Sep-21-2011]
A8C980 759 Germanicol synthase OS=Rh N/A no 0.896 0.090 0.591 3e-20
E2IUA6 779 Taraxerol synthase OS=Kal N/A no 0.896 0.088 0.577 9e-20
Q8W3Z1 779 Beta-amyrin synthase OS=B N/A no 0.896 0.088 0.605 9e-20
Q9MB42 765 Beta-amyrin synthase OS=G N/A no 0.896 0.090 0.563 1e-19
Q9LRH8 758 Beta-amyrin synthase OS=P N/A no 0.896 0.091 0.605 3e-19
E2IUA8 767 Friedelin synthase OS=Kal N/A no 0.896 0.089 0.563 3e-19
E2IUA7 767 Glutinol synthase OS=Kala N/A no 0.896 0.089 0.549 5e-19
E2IUA9 765 Lupeol synthase OS=Kalanc N/A no 0.896 0.090 0.549 5e-19
Q9FR95 766 Arabidiol synthase OS=Ara yes no 0.909 0.091 0.577 1e-18
A8CDT3 761 Lupeol synthase OS=Brugui N/A no 0.896 0.090 0.577 2e-18
>sp|A8C980|GERS_RHISY Germanicol synthase OS=Rhizophora stylosa GN=M1 PE=1 SV=1 Back     alignment and function desciption
 Score = 97.1 bits (240), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/71 (59%), Positives = 56/71 (78%), Gaps = 2/71 (2%)

Query: 1  MWRLKIGDHRTKNDPYIFSTNNHVGRQIWEFDPDADSPEELAEVEGARLNYFNNRFNVKN 60
          MWRLKI +    NDPY++STNN+VGRQIWEFDPDA +PEE A+ E AR N++ NR+ VK 
Sbjct: 1  MWRLKIAE--GGNDPYLYSTNNYVGRQIWEFDPDAGTPEERAKAEEARQNFYKNRYQVKP 58

Query: 61 SSNLIWQIQVI 71
          S +L+W++Q +
Sbjct: 59 SGDLLWRLQFL 69




Multifunctional triterpene synthase producing germanicol, beta-amyrin and lupeol in the ratio 63:33:4.
Rhizophora stylosa (taxid: 98588)
EC: 5EC: .EC: 4EC: .EC: 9EC: 9EC: .EC: 3EC: 4
>sp|E2IUA6|TARS_KALDA Taraxerol synthase OS=Kalanchoe daigremontiana PE=1 SV=1 Back     alignment and function description
>sp|Q8W3Z1|BAMS_BETPL Beta-amyrin synthase OS=Betula platyphylla GN=OSCBPY PE=1 SV=1 Back     alignment and function description
>sp|Q9MB42|BAMS_GLYGL Beta-amyrin synthase OS=Glycyrrhiza glabra GN=GgbAS1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LRH8|BAMS_PEA Beta-amyrin synthase OS=Pisum sativum GN=OSCPSY PE=2 SV=1 Back     alignment and function description
>sp|E2IUA8|FRIES_KALDA Friedelin synthase OS=Kalanchoe daigremontiana PE=1 SV=1 Back     alignment and function description
>sp|E2IUA7|GLUTS_KALDA Glutinol synthase OS=Kalanchoe daigremontiana PE=1 SV=1 Back     alignment and function description
>sp|E2IUA9|LUPS_KALDA Lupeol synthase OS=Kalanchoe daigremontiana PE=1 SV=1 Back     alignment and function description
>sp|Q9FR95|PEN1_ARATH Arabidiol synthase OS=Arabidopsis thaliana GN=PEN1 PE=1 SV=1 Back     alignment and function description
>sp|A8CDT3|LUPS_BRUGY Lupeol synthase OS=Bruguiera gymnorhiza GN=LUS PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query77
297735719 910 unnamed protein product [Vitis vinifera] 0.896 0.075 0.647 3e-20
297735695 885 unnamed protein product [Vitis vinifera] 0.896 0.077 0.647 3e-20
359483263 773 PREDICTED: beta-amyrin synthase-like [Vi 0.896 0.089 0.647 4e-20
225443448 769 PREDICTED: beta-Amyrin Synthase 1 [Vitis 0.896 0.089 0.647 4e-20
147780749 664 hypothetical protein VITISV_012054 [Viti 0.896 0.103 0.647 7e-20
255544476 757 Cycloartenol synthase, putative [Ricinus 0.896 0.091 0.633 7e-20
255572805 679 Cycloartenol synthase, putative [Ricinus 0.896 0.101 0.633 7e-20
359483274 556 PREDICTED: beta-Amyrin Synthase 1-like [ 0.896 0.124 0.633 2e-19
351725741 739 beta-amyrin synthase [Glycine max] gi|23 0.896 0.093 0.633 2e-19
297735706 872 unnamed protein product [Vitis vinifera] 0.896 0.079 0.633 3e-19
>gi|297735719|emb|CBI18406.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 46/71 (64%), Positives = 56/71 (78%), Gaps = 2/71 (2%)

Query: 1   MWRLKIGDHRTKNDPYIFSTNNHVGRQIWEFDPDADSPEELAEVEGARLNYFNNRFNVKN 60
           MWRLK+ D    NDPYI+STNN VGRQIWEFDPD  +PEE AEVE AR N++ NRF VK 
Sbjct: 142 MWRLKVAD--GGNDPYIYSTNNFVGRQIWEFDPDYGTPEERAEVEAARENFWKNRFQVKP 199

Query: 61  SSNLIWQIQVI 71
           SS+L+W++Q +
Sbjct: 200 SSDLLWRMQFL 210




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735695|emb|CBI18382.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359483263|ref|XP_002269328.2| PREDICTED: beta-amyrin synthase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|225443448|ref|XP_002271333.1| PREDICTED: beta-Amyrin Synthase 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147780749|emb|CAN60316.1| hypothetical protein VITISV_012054 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255544476|ref|XP_002513299.1| Cycloartenol synthase, putative [Ricinus communis] gi|223547207|gb|EEF48702.1| Cycloartenol synthase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255572805|ref|XP_002527335.1| Cycloartenol synthase, putative [Ricinus communis] gi|223533335|gb|EEF35087.1| Cycloartenol synthase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359483274|ref|XP_002268990.2| PREDICTED: beta-Amyrin Synthase 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|351725741|ref|NP_001236591.1| beta-amyrin synthase [Glycine max] gi|23428800|gb|AAM23264.1| beta-amyrin synthase [Glycine max] Back     alignment and taxonomy information
>gi|297735706|emb|CBI18393.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query77
UNIPROTKB|Q8W3Z1 779 OSCBPY "Beta-amyrin synthase" 0.896 0.088 0.605 2.1e-18
UNIPROTKB|E2IUA6 779 E2IUA6 "Taraxerol synthase" [K 0.896 0.088 0.577 2.7e-18
UNIPROTKB|E2IUA8 767 E2IUA8 "Friedelin synthase" [K 0.896 0.089 0.563 3.3e-18
UNIPROTKB|A8CDT2 759 BAS "Beta-amyrin synthase" [Br 0.896 0.090 0.563 6.9e-18
UNIPROTKB|E2IUA9 765 E2IUA9 "Lupeol synthase" [Kala 0.896 0.090 0.549 1.1e-17
UNIPROTKB|E2IUA7 767 E2IUA7 "Glutinol synthase" [Ka 0.896 0.089 0.549 1.1e-17
UNIPROTKB|Q2XPU7 769 Q2XPU7 "Lupeol synthase" [Rici 0.896 0.089 0.591 1.2e-17
TAIR|locus:2129995 766 PEN1 "pentacyclic triterpene s 0.909 0.091 0.577 2.4e-17
TAIR|locus:2130040 759 BARS1 "baruol synthase 1" [Ara 0.909 0.092 0.577 3e-17
TAIR|locus:504956092 769 CAMS1 "AT1G78955" [Arabidopsis 0.909 0.091 0.577 3.1e-17
UNIPROTKB|Q8W3Z1 OSCBPY "Beta-amyrin synthase" [Betula platyphylla (taxid:78630)] Back     alignment and assigned GO terms
 Score = 233 (87.1 bits), Expect = 2.1e-18, P = 2.1e-18
 Identities = 43/71 (60%), Positives = 55/71 (77%)

Query:     1 MWRLKIGDHRTKNDPYIFSTNNHVGRQIWEFDPDADSPEELAEVEGARLNYFNNRFNVKN 60
             MWRLKI D  +  DPYI+STNN VGRQ WEFDP A SP+E AEVE AR N+++NR+ VK 
Sbjct:     1 MWRLKIADGGS--DPYIYSTNNFVGRQTWEFDPQAGSPQERAEVEEARRNFYDNRYQVKP 58

Query:    61 SSNLIWQIQVI 71
             S +L+W++Q +
Sbjct:    59 SGDLLWRMQFL 69




GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=IDA
GO:0042300 "beta-amyrin synthase activity" evidence=IDA
UNIPROTKB|E2IUA6 E2IUA6 "Taraxerol synthase" [Kalanchoe daigremontiana (taxid:23013)] Back     alignment and assigned GO terms
UNIPROTKB|E2IUA8 E2IUA8 "Friedelin synthase" [Kalanchoe daigremontiana (taxid:23013)] Back     alignment and assigned GO terms
UNIPROTKB|A8CDT2 BAS "Beta-amyrin synthase" [Bruguiera gymnorhiza (taxid:39984)] Back     alignment and assigned GO terms
UNIPROTKB|E2IUA9 E2IUA9 "Lupeol synthase" [Kalanchoe daigremontiana (taxid:23013)] Back     alignment and assigned GO terms
UNIPROTKB|E2IUA7 E2IUA7 "Glutinol synthase" [Kalanchoe daigremontiana (taxid:23013)] Back     alignment and assigned GO terms
UNIPROTKB|Q2XPU7 Q2XPU7 "Lupeol synthase" [Ricinus communis (taxid:3988)] Back     alignment and assigned GO terms
TAIR|locus:2129995 PEN1 "pentacyclic triterpene synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130040 BARS1 "baruol synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504956092 CAMS1 "AT1G78955" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00029694001
SubName- Full=Chromosome chr9 scaffold_49, whole genome shotgun sequence; (710 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00035514001
SubName- Full=Chromosome undetermined scaffold_79, whole genome shotgun sequence; (169 aa)
       0.505
GSVIVG00032384001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (133 aa)
       0.499

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query77
PLN02993 763 PLN02993, PLN02993, lupeol synthase 6e-26
PLN03012 759 PLN03012, PLN03012, Camelliol C synthase 7e-26
>gnl|CDD|215537 PLN02993, PLN02993, lupeol synthase Back     alignment and domain information
 Score = 98.4 bits (245), Expect = 6e-26
 Identities = 39/71 (54%), Positives = 53/71 (74%), Gaps = 1/71 (1%)

Query: 1  MWRLKIGDHRTKNDPYIFSTNNHVGRQIWEFDPDADSPEELAEVEGARLNYFNNRFNVKN 60
          MW+LKIG+   + DPY+FS+NN VGRQ WEFDP A +PEE A VE AR ++ +NR  VK 
Sbjct: 1  MWKLKIGEGNGE-DPYLFSSNNFVGRQTWEFDPKAGTPEERAAVEEARRSFLDNRSRVKG 59

Query: 61 SSNLIWQIQVI 71
           S+L+W++Q +
Sbjct: 60 CSDLLWRMQFL 70


Length = 763

>gnl|CDD|166653 PLN03012, PLN03012, Camelliol C synthase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 77
PLN02993 763 lupeol synthase 100.0
PLN03012 759 Camelliol C synthase 100.0
KOG0497 760 consensus Oxidosqualene-lanosterol cyclase and rel 99.94
smart0012045 HX Hemopexin-like repeats. Hemopexin is a heme-bin 80.58
>PLN02993 lupeol synthase Back     alignment and domain information
Probab=100.00  E-value=3.5e-34  Score=239.24  Aligned_cols=71  Identities=55%  Similarity=1.039  Sum_probs=67.5

Q ss_pred             CceeeecCCCCCCCCceeccCCcceeeeeEeCCCCCCHHHHHHHHHHHHHHhhccCccCCchhHHHHHHHhh
Q 048049            1 MWRLKIGDHRTKNDPYIFSTNNHVGRQIWEFDPDADSPEELAEVEGARLNYFNNRFNVKNSSNLIWQIQVIC   72 (77)
Q Consensus         1 MWkLKiaeg~~g~~p~L~S~Nn~vGRQ~WEFDp~~GtpEE~a~VE~aR~~F~~nRf~~K~SsDLLmR~Q~~~   72 (77)
                      ||||||++|+ +++|||+|||||||||+|||||++|||||+++||.+|++|+.|||++|||+||||||||++
T Consensus         1 ~wrl~~~~~~-~~~~~l~s~n~~~grq~w~~d~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~   71 (763)
T PLN02993          1 MWKLKIGEGN-GEDPYLFSSNNFVGRQTWEFDPKAGTPEERAAVEEARRSFLDNRSRVKGCSDLLWRMQFLK   71 (763)
T ss_pred             CCceEeCCCC-CCCcceecccCcCceeeeEeCCCCCChHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHh
Confidence            9999999983 2399999999999999999999999999999999999999999999999999999999765



>PLN03012 Camelliol C synthase Back     alignment and domain information
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>smart00120 HX Hemopexin-like repeats Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query77
1w6k_A 732 Lanosterol synthase; cyclase, cholesterol, monotop 3e-16
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Length = 732 Back     alignment and structure
 Score = 70.3 bits (171), Expect = 3e-16
 Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 5/56 (8%)

Query: 1  MWRLKIGDHRTKNDPYIFSTNNHVGRQIWEFDPDADSPEELAEVEGARLNYFNNRF 56
           ++ +        D   +  N   GRQ W +  D  +  E   +E   L      +
Sbjct: 13 PYKTEP-----ATDLGRWRLNCERGRQTWTYLQDERAGREQTGLEAYALGLDTKNY 63


Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00