Citrus Sinensis ID: 048051

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
MPTTSCVSLRLGPLVSLRTRSWQQGRSLHSNSLSCICQLSSLPKPLVTDFKTSPRQNVLTYEGDRGTKSLEEELQERTRKALRKSSNDPTATMKLIDTIQRLGIGYHFEDEIMERLERFSDGDAAGEENLFENALRFRLLRHNGLPACTDIFKKFINKEGKLKESVSKDTRGMLSLYEASYLATQDKDILFEAMEFTKTELTQSVSLMDSQSSRHVVQALALPRHLRMSRSEAGNYINEYSQSWNHDQTLLQLAKSDFNMVQSLHQRELAEIKRWWKQLGLVDKLGFGRDRPLECFLWT
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEccc
ccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHcHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccHHHHHHHEcccccEcHHHcccHHHHHHHHHHHcccccccHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccHHHHHHcc
mpttscvslrlgplvslrtrswqqgrslhsnslscicqlsslpkplvtdfktsprqnvltyegdrgtKSLEEELQERTRKALrkssndptatMKLIDTIQrlgigyhfeDEIMERLerfsdgdaageENLFENALRFRLLRHNGLPACTDIFKKFINKegklkesvskDTRGMLSLYEASYLATQDKDILFEAMEFTKTELTQsvslmdsqssRHVVQALALPRHLRMSRSEAGNYINEYSQSWNHDQTLLQLAKSDFNMVQSLHQRELAEIKRWWKQLGlvdklgfgrdrplecflwt
mpttscvslrlgpLVSLRTRSWQQGRSLHSNSLSCICQLSSLPkplvtdfktsprqnvltyegdrgtksleEELQERTRkalrkssndptatmklidtiqrlgIGYHFEDEIMERLERFSDGDAAGEENLFENALRFRLLRHNGLPACTDIFKKFInkegklkesvskdtrGMLSLYEASYLATQDKDILFEAMEFTKTELTQSvslmdsqssRHVVQALALPRHLRMSRSEAGNYINEYSQSWNHDQTLLQLAKSDFNMVQSLHQRELAEIKRWWKQLglvdklgfgrdrplecflwt
MPTTSCVSLRLGPLVSLRTRSWQQGRSLHSNSLSCICQLSSLPKPLVTDFKTSPRQNVLTYEGDRGTKSLEEELQERTRKALRKSSNDPTATMKLIDTIQRLGIGYHFEDEIMERLERFSDGDAAGEENLFENALRFRLLRHNGLPACTDIFKKFINKEGKLKESVSKDTRGMLSLYEASYLATQDKDILFEAMEFTKTELTQSVSLMDSQSSRHVVQALALPRHLRMSRSEAGNYINEYSQSWNHDQTLLQLAKSDFNMVQSLHQRELAEIKRWWKQLGLVDKLGFGRDRPLECFLWT
******VSLRLGPLVSLRTRSWQQGRSLHSNSLSCICQLSSLPKPLVT********************************************MKLIDTIQRLGIGYHFEDEIMERLERFSDGDAAGEENLFENALRFRLLRHNGLPACTDIFKKFINKEGKL*******TRGMLSLYEASYLATQDKDILFEAMEFTKTEL***************VQALAL***********GNYINEYSQSWNHDQTLLQLAKSDFNMVQSLHQRELAEIKRWWKQLGLVDKLGFGRDRPLECFLW*
*PT******R************************************VTDFKTSPRQNVLTYEGDRGTKSLEEELQERTRKALRKSSNDPTATMKLIDTIQRLGIGYHFEDEIMERLERFSDGDAAGEENLFENALRFRLLRHNGLPACTDIFKKFINKEGKLKESVSKDTRGMLSLYEASYLATQDKDILFEAMEFTKTELTQSVSLMDSQSSRHVVQALALPRHLRMSRSEAGNYINEYSQSWNHDQTLLQLAKSDFNMVQSLHQRELAEIKRWWKQLGLVDKLGFGRDRPLECFLWT
MPTTSCVSLRLGPLVSLRTR***********SLSCICQLSSLPKPLVTDFKTSPRQNVLTYEGDRGTKSLE*****************PTATMKLIDTIQRLGIGYHFEDEIMERLERFSDGDAAGEENLFENALRFRLLRHNGLPACTDIFKKFINKEGKLKESVSKDTRGMLSLYEASYLATQDKDILFEAMEFTKTELTQSVSLMDSQSSRHVVQALALPRHLRMSRSEAGNYINEYSQSWNHDQTLLQLAKSDFNMVQSLHQRELAEIKRWWKQLGLVDKLGFGRDRPLECFLWT
**********LG*******************************KPLVTDFKTSPRQNVLTYEGDRGTKSLEEELQERTRKALRKSSNDPTATMKLIDTIQRLGIGYHFEDEIMERLERFSDGDAAGEENLFENALRFRLLRHNGLPACTDIFKKFINKEGKLKESVSKDTRGMLSLYEASYLATQDKDILFEAMEFTKTELTQSVSLMDSQSSRHVVQALALPRHLRMSRSEAGNYINEYSQSWNHDQTLLQLAKSDFNMVQSLHQRELAEIKRWWKQLGLVDKLGFGRDRPLECFLWT
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MPTTSCVSLRLGPLVSLRTRSWQQGRSLHSNSLSCICQLSSLPKPLVTDFKTSPRQNVLTYEGDRGTKSLEEELQERTRKALRKSSNDPTATMKLIDTIQRLGIGYHFEDEIMERLERFSDGDAAGEENLFENALRFRLLRHNGLPACTDIFKKFINKEGKLKESVSKDTRGMLSLYEASYLATQDKDILFEAMEFTKTELTQSVSLMDSQSSRHVVQALALPRHLRMSRSEAGNYINEYSQSWNHDQTLLQLAKSDFNMVQSLHQRELAEIKRWWKQLGLVDKLGFGRDRPLECFLWT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query299 2.2.26 [Sep-21-2011]
Q5SBP3 574 R-linalool synthase, chlo N/A no 0.866 0.451 0.490 1e-60
Q6USK1 567 Geraniol synthase, chloro N/A no 0.859 0.453 0.496 2e-60
Q6Q3H3 557 (-)-germacrene D synthase no no 0.785 0.421 0.436 9e-51
Q39760 554 (+)-delta-cadinene syntha N/A no 0.816 0.440 0.397 2e-48
O49853 554 (+)-delta-cadinene syntha N/A no 0.816 0.440 0.397 3e-48
Q9FQ27 544 (E,E)-germacrene B syntha N/A no 0.795 0.437 0.413 7e-48
P93665 554 (+)-delta-cadinene syntha N/A no 0.816 0.440 0.393 2e-47
J9R5V4 562 Valerena-4,7(11)-diene sy N/A no 0.809 0.430 0.396 3e-47
Q39761 554 (+)-delta-cadinene syntha N/A no 0.816 0.440 0.389 4e-47
B2KSJ5 571 (+)-gamma-cadinene syntha N/A no 0.785 0.411 0.417 1e-46
>sp|Q5SBP3|LLOS_OCIBA R-linalool synthase, chloroplastic OS=Ocimum basilicum GN=LIS PE=1 SV=1 Back     alignment and function desciption
 Score =  233 bits (594), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 132/269 (49%), Positives = 172/269 (63%), Gaps = 10/269 (3%)

Query: 34  SCICQLSSLP---KPLVTDFKTSPRQNVLTYEGDRGTKSLEEELQERTRKALRKSSNDPT 90
           +C    S++P    PL+     SP +N   +  +R +K  E  L+E  RK L+++  +  
Sbjct: 36  ACTPLASAVPLSSTPLING-DNSPLKNTHQHVEERSSKRREYLLEETARK-LQRNDTESV 93

Query: 91  ATMKLIDTIQRLGIGYHFEDEIMERLERFSDGDAAGEENLFENALRFRLLRHNGLPACTD 150
             +KLID IQRLGIGY+FED I   L   S   A  EE+LF  ALRFRLLRHNG+    +
Sbjct: 94  EKLKLIDNIQRLGIGYYFEDAIDAVLR--SPFSAEEEEDLFTAALRFRLLRHNGIQVTPE 151

Query: 151 IFKKFINKEGKLKESVSKDTRGMLSLYEASYLATQDKDILFEAMEFTKTELTQSVSLMDS 210
           IF KF ++ G+  ES   DT G+LSLYEAS L    ++IL EAMEF +  L +S+S + +
Sbjct: 152 IFLKFKDERGEFDES---DTLGLLSLYEASNLGVTGEEILEEAMEFAEPRLRRSLSELAA 208

Query: 211 QSSRHVVQALALPRHLRMSRSEAGNYINEYSQSWNHDQTLLQLAKSDFNMVQSLHQRELA 270
                V QAL +PRHLRM+R EA  +I +Y +  +HD  LL+LA  D+N VQ+ HQ EL 
Sbjct: 209 PLRSEVAQALDVPRHLRMARLEARRFIEQYGKQSDHDGDLLELAILDYNQVQAQHQSELT 268

Query: 271 EIKRWWKQLGLVDKLGFGRDRPLECFLWT 299
           EI RWWKQLGLV+KLGFGRDR LECF+WT
Sbjct: 269 EITRWWKQLGLVEKLGFGRDRALECFMWT 297
Monoterpene synthase that catalyzes the formation of (3R)-linalool from geranyl diphosphate.
Ocimum basilicum (taxid: 39350)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 2EC: 6
>sp|Q6USK1|GERS_OCIBA Geraniol synthase, chloroplastic OS=Ocimum basilicum GN=GES PE=1 SV=1 Back     alignment and function description
>sp|Q6Q3H3|TPSGD_VITVI (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1 Back     alignment and function description
>sp|Q39760|DCS2_GOSAR (+)-delta-cadinene synthase isozyme XC14 OS=Gossypium arboreum PE=2 SV=1 Back     alignment and function description
>sp|O49853|DCS4_GOSAR (+)-delta-cadinene synthase isozyme C2 OS=Gossypium arboreum GN=CAD1-C2 PE=2 SV=1 Back     alignment and function description
>sp|Q9FQ27|TPSGB_SOLHA (E,E)-germacrene B synthase OS=Solanum habrochaites GN=SSTLH1 PE=1 SV=1 Back     alignment and function description
>sp|P93665|DCS1_GOSHI (+)-delta-cadinene synthase OS=Gossypium hirsutum GN=CDN1 PE=1 SV=1 Back     alignment and function description
>sp|J9R5V4|TPS2_VALOF Valerena-4,7(11)-diene synthase OS=Valeriana officinalis GN=TPS2 PE=1 SV=1 Back     alignment and function description
>sp|Q39761|DCS1_GOSAR (+)-delta-cadinene synthase isozyme XC1 OS=Gossypium arboreum PE=1 SV=1 Back     alignment and function description
>sp|B2KSJ5|GCSY1_CUCME (+)-gamma-cadinene synthase OS=Cucumis melo PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query299
255544409 572 1,8-cineole synthase, chloroplast precur 0.899 0.470 0.555 2e-75
359485711 593 PREDICTED: R-linalool synthase, chloropl 0.829 0.418 0.543 6e-71
313755454 595 geraniol synthase [Vitis vinifera] 0.829 0.416 0.547 6e-71
359485715 595 PREDICTED: R-linalool synthase, chloropl 0.829 0.416 0.543 2e-70
357453551 567 Myrcene synthase [Medicago truncatula] g 0.822 0.433 0.535 5e-70
313755452 591 geraniol synthase [Vitis vinifera] 0.829 0.419 0.543 5e-70
313575573 593 geraniol synthase [Vitis vinifera] 0.829 0.418 0.543 5e-70
359485713 601 PREDICTED: LOW QUALITY PROTEIN: R-linalo 0.829 0.412 0.539 1e-69
356543756 568 PREDICTED: R-linalool synthase, chloropl 0.752 0.396 0.543 3e-66
380513810 589 plastid geraniol synthase [Catharanthus 0.856 0.434 0.534 2e-65
>gi|255544409|ref|XP_002513266.1| 1,8-cineole synthase, chloroplast precursor, putative [Ricinus communis] gi|223547640|gb|EEF49134.1| 1,8-cineole synthase, chloroplast precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 159/286 (55%), Positives = 195/286 (68%), Gaps = 17/286 (5%)

Query: 15  VSLRTRSWQQGRSLHSNSLSCICQLSSLPKPLVTDFKTSPRQNVLTYEGDRGTKSLEEEL 74
           +S    S++   SL   S +  C +S++ +P   +  T+  +             + EEL
Sbjct: 21  ISWGPSSYRTNSSLSVRSPTLTCSISTISQPTRKEPATTKPE-------------IMEEL 67

Query: 75  QERTRKALRKSSNDPTATMKLIDTIQRLGIGYHFEDEIMERLERFSDGDAAGEENLFENA 134
            E TRK L  SS+ P ATMKLID+IQRLG+GY+FE+EI   L+RF D +    E+L   A
Sbjct: 68  HEGTRKELLTSSS-PIATMKLIDSIQRLGVGYYFEEEINTLLDRFLDLETT--EDLLATA 124

Query: 135 LRFRLLRHNGLPACTDIFKKFINKEGKLKESVSKDTRGMLSLYEASYLATQDKDILFEAM 194
           LRFRLLR N  PA +D+F KF+NK+GK KES+ KD  G+LSLYEASYL T+D+  L EAM
Sbjct: 125 LRFRLLRDNCFPAHSDVFGKFMNKDGKFKESLRKDVWGLLSLYEASYLGTKDEVELVEAM 184

Query: 195 EFTKTELT-QSVSLMDSQSSRHVVQALALPRHLRMSRSEAGNYINEYSQSWNHDQTLLQL 253
           EFTKT L  QS+ LM  + SRHV QAL LPRHLRM R EA NYI+EYS   N+   LL+L
Sbjct: 185 EFTKTCLEEQSIPLMAHKLSRHVSQALDLPRHLRMPRLEARNYIHEYSLESNNSPPLLEL 244

Query: 254 AKSDFNMVQSLHQRELAEIKRWWKQLGLVDKLGFGRDRPLECFLWT 299
           AK +FN VQSLHQ+EL EI RWWKQLGLVDKLGF RDRPLEC+LWT
Sbjct: 245 AKLEFNAVQSLHQKELIEIVRWWKQLGLVDKLGFARDRPLECYLWT 290

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359485711|ref|XP_002275822.2| PREDICTED: R-linalool synthase, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|313755454|gb|ADR74218.1| geraniol synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|359485715|ref|XP_003633320.1| PREDICTED: R-linalool synthase, chloroplastic [Vitis vinifera] Back     alignment and taxonomy information
>gi|357453551|ref|XP_003597053.1| Myrcene synthase [Medicago truncatula] gi|77737592|gb|ABB01626.1| terpene synthase [Medicago truncatula] gi|355486101|gb|AES67304.1| Myrcene synthase [Medicago truncatula] Back     alignment and taxonomy information
>gi|313755452|gb|ADR74217.1| geraniol synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|313575573|gb|ADR66822.1| geraniol synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|359485713|ref|XP_003633319.1| PREDICTED: LOW QUALITY PROTEIN: R-linalool synthase, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356543756|ref|XP_003540326.1| PREDICTED: R-linalool synthase, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|380513810|gb|AFD64744.1| plastid geraniol synthase [Catharanthus roseus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query299
UNIPROTKB|Q6USK1 567 GES "Geraniol synthase, chloro 0.859 0.453 0.496 1.7e-57
UNIPROTKB|B5A434 576 B5A434 "(+)-alpha-terpineol sy 0.759 0.394 0.443 5e-44
UNIPROTKB|Q672F7 595 EBOS "Tricyclene synthase EBOS 0.929 0.467 0.379 5e-44
UNIPROTKB|B2KSJ5 571 B2KSJ5 "(+)-gamma-cadinene syn 0.785 0.411 0.417 1.3e-43
UNIPROTKB|E2E2N7 555 TPS4 "Bicyclogermacrene syntha 0.802 0.432 0.395 5.7e-43
UNIPROTKB|B3TPQ6 550 B3TPQ6 "Beta-cubebene synthase 0.772 0.42 0.425 9.3e-43
UNIPROTKB|B5A435 559 B5A435 "Sesquiterpene synthase 0.886 0.474 0.359 7.5e-41
UNIPROTKB|Q5UB07 580 TPS4 "Tricyclene synthase TPS4 0.923 0.475 0.367 4.2e-40
UNIPROTKB|B3TPQ7 592 B3TPQ7 "Alpha-terpineol syntha 0.759 0.383 0.419 8.7e-40
UNIPROTKB|Q8L5K4 600 Q8L5K4 "Gamma-terpinene syntha 0.789 0.393 0.376 2.9e-39
UNIPROTKB|Q6USK1 GES "Geraniol synthase, chloroplastic" [Ocimum basilicum (taxid:39350)] Back     alignment and assigned GO terms
 Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
 Identities = 134/270 (49%), Positives = 172/270 (63%)

Query:    34 SCICQLSSLP---KPLVTDFKTSPRQNVLTYEGDRGTKSLEEELQERTRKALRKSSNDPT 90
             +C    S++P    PL+     S R+N   +  +  +K  E  L+E TRK L+++  +  
Sbjct:    36 ACTPLASAMPLSSTPLING-DNSQRKNTRQHMEESSSKRREYLLEETTRK-LQRNDTESV 93

Query:    91 ATMKLIDTIQRLGIGYHFEDEIMERLER-FSDGDAAGEENLFENALRFRLLRHNGLPACT 149
               +KLID IQ+LGIGY+FED I   L   FS     GEE+LF  ALRFRLLRHNG+    
Sbjct:    94 EKLKLIDNIQQLGIGYYFEDAINAVLRSPFS----TGEEDLFTAALRFRLLRHNGIEISP 149

Query:   150 DIFKKFINKEGKLKESVSKDTRGMLSLYEASYLATQDKDILFEAMEFTKTELTQSVSLMD 209
             +IF KF ++ GK  ES   DT G+LSLYEAS L    ++IL EAMEF +  L +S+S   
Sbjct:   150 EIFLKFKDERGKFDES---DTLGLLSLYEASNLGVAGEEILEEAMEFAEARLRRSLSEPA 206

Query:   210 SQSSRHVVQALALPRHLRMSRSEAGNYINEYSQSWNHDQTLLQLAKSDFNMVQSLHQREL 269
             +     V QAL +PRHLRM+R EA  +I +Y +  +HD  LL+LA  D+N VQ+ HQ EL
Sbjct:   207 APLHGEVAQALDVPRHLRMARLEARRFIEQYGKQSDHDGDLLELAILDYNQVQAQHQSEL 266

Query:   270 AEIKRWWKQLGLVDKLGFGRDRPLECFLWT 299
              EI RWWK+LGLVDKL FGRDRPLECFLWT
Sbjct:   267 TEIIRWWKELGLVDKLSFGRDRPLECFLWT 296
GO:0016787 "hydrolase activity" evidence=IDA
GO:0030145 "manganese ion binding" evidence=IDA
GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA
GO:0042803 "protein homodimerization activity" evidence=IDA
UNIPROTKB|B5A434 B5A434 "(+)-alpha-terpineol synthase" [Santalum album (taxid:35974)] Back     alignment and assigned GO terms
UNIPROTKB|Q672F7 EBOS "Tricyclene synthase EBOS, chloroplastic" [Lotus japonicus (taxid:34305)] Back     alignment and assigned GO terms
UNIPROTKB|B2KSJ5 B2KSJ5 "(+)-gamma-cadinene synthase" [Cucumis melo (taxid:3656)] Back     alignment and assigned GO terms
UNIPROTKB|E2E2N7 TPS4 "Bicyclogermacrene synthase" [Origanum vulgare (taxid:39352)] Back     alignment and assigned GO terms
UNIPROTKB|B3TPQ6 B3TPQ6 "Beta-cubebene synthase" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
UNIPROTKB|B5A435 B5A435 "Sesquiterpene synthase" [Santalum album (taxid:35974)] Back     alignment and assigned GO terms
UNIPROTKB|Q5UB07 TPS4 "Tricyclene synthase TPS4, chloroplastic" [Medicago truncatula (taxid:3880)] Back     alignment and assigned GO terms
UNIPROTKB|B3TPQ7 B3TPQ7 "Alpha-terpineol synthase, chloroplastic" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
UNIPROTKB|Q8L5K4 Q8L5K4 "Gamma-terpinene synthase, chloroplastic" [Citrus limon (taxid:2708)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00026107001
SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (513 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query299
cd00684 542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 2e-81
pfam01397177 pfam01397, Terpene_synth, Terpene synthase, N-term 8e-48
PLN02279 784 PLN02279, PLN02279, ent-kaur-16-ene synthase 6e-19
pfam03936 270 pfam03936, Terpene_synth_C, Terpene synthase famil 1e-18
PLN02592 800 PLN02592, PLN02592, ent-copalyl diphosphate syntha 4e-17
cd00868 284 cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla 7e-09
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  255 bits (654), Expect = 2e-81
 Identities = 110/238 (46%), Positives = 150/238 (63%), Gaps = 9/238 (3%)

Query: 71  EEELQERTRKALRKSS--NDPTATMKLIDTIQRLGIGYHFEDEIMERLERF----SDGDA 124
            EEL+E  RK L  S    D    + LID +QRLGI YHFEDEI E L+      ++   
Sbjct: 33  IEELKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEIKEILDYIYRYWTERGE 92

Query: 125 AGEENLFENALRFRLLRHNGLPACTDIFKKFINKEGKLKESVSKDTRGMLSLYEASYLAT 184
           + E++L+  AL FRLLR +G    +D+FKKF +++GK KES+++D +GMLSLYEAS+L+ 
Sbjct: 93  SNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSF 152

Query: 185 QDKDILFEAMEFTKT---ELTQSVSLMDSQSSRHVVQALALPRHLRMSRSEAGNYINEYS 241
             +DIL EA+ FT     E  +S  ++D   S  +  AL +P H  + R EA  YI  Y 
Sbjct: 153 PGEDILDEALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYE 212

Query: 242 QSWNHDQTLLQLAKSDFNMVQSLHQRELAEIKRWWKQLGLVDKLGFGRDRPLECFLWT 299
           Q  +H++TLL+LAK DFN++Q+LHQ EL  + RWWK L L  KL F RDR +EC+ W 
Sbjct: 213 QEDDHNETLLELAKLDFNILQALHQEELKILSRWWKDLDLASKLPFARDRLVECYFWA 270

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information
>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase Back     alignment and domain information
>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 299
cd00684 542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PLN02279 784 ent-kaur-16-ene synthase 100.0
PLN02592 800 ent-copalyl diphosphate synthase 100.0
PF01397183 Terpene_synth: Terpene synthase, N-terminal domain 100.0
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
Probab=100.00  E-value=1.7e-87  Score=676.77  Aligned_cols=253  Identities=44%  Similarity=0.701  Sum_probs=237.2

Q ss_pred             CC-CCCCCCCc----ccc--CCCCch-hhHHHHHHHHHHHHHHHhhhC--CCCccchhhHHHHHHHhCCccccHHHHHHH
Q 048051           46 LV-TDFKTSPR----QNV--LTYEGD-RGTKSLEEELQERTRKALRKS--SNDPTATMKLIDTIQRLGIGYHFEDEIMER  115 (299)
Q Consensus        46 r~-a~~~ps~W----fl~--~~~~~~-~~~~~~~~~Lk~eVr~~l~~~--~~d~~~~L~lID~LqRLGI~yhFe~EI~~~  115 (299)
                      |+ ++|+||+|    |++  +++.+. .+.++++ +||++||+||...  +.|++++|+|||+||||||+|||++||+++
T Consensus         1 r~~~~~~~~~w~~~~~~s~~~~~~~~~~~~~~~~-~lk~~v~~~~~~~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~   79 (542)
T cd00684           1 RPSANFPPSLWGDDHFLSLSSDYSEEDELEEEIE-ELKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEIKEI   79 (542)
T ss_pred             CCCCCCCCCcCCCcceeecCCCcchhHHHHHHHH-HHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCchhhhHHHHHHH
Confidence            45 99999999    444  344443 6888999 9999999999864  579999999999999999999999999999


Q ss_pred             HHHhHcCCCC----CCCchhhHHHHHHHHhhcCccccccccccccccccccccccccchHHHHhHhhhhccCCCCchHHH
Q 048051          116 LERFSDGDAA----GEENLFENALRFRLLRHNGLPACTDIFKKFINKEGKLKESVSKDTRGMLSLYEASYLATQDKDILF  191 (299)
Q Consensus       116 L~~iy~~~~~----~~~DL~~~AL~FRLLRqhGY~VS~DvF~~F~d~~G~F~~~l~~Dv~glLsLYeAS~l~~~gE~iLd  191 (299)
                      |++||+.+..    ...||++|||+|||||||||+||||||++|+|++|+|++++.+||+|||+|||||||+++||+|||
T Consensus        80 L~~i~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~~gE~iLd  159 (542)
T cd00684          80 LDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILD  159 (542)
T ss_pred             HHHHHHhhcccccccCCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCCCCcHHHH
Confidence            9999987532    247999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcC---CCCccHHHHHHhccCCccCCcchhhhhhhhhhcccCCcccHHHHHHHHhhhHHHHHHHHHH
Q 048051          192 EAMEFTKTELTQSVSL---MDSQSSRHVVQALALPRHLRMSRSEAGNYINEYSQSWNHDQTLLQLAKSDFNMVQSLHQRE  268 (299)
Q Consensus       192 eA~~Fs~~~L~~~~~~---~~~~L~~~V~~aL~~P~h~~l~RleaR~yI~~Y~~~~~~n~~lLeLAKlDFn~~Qs~hq~E  268 (299)
                      ||+.||++||++.++.   ++++|+++|++||++|+|+++||+|||+||++|++++++|++||||||+|||+||++||+|
T Consensus       160 eA~~ft~~~L~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~~n~~lLelAkldfn~~Q~~hq~E  239 (542)
T cd00684         160 EALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQEE  239 (542)
T ss_pred             HHHHHHHHHHHHHhhccCCCCchHHHHHHHHccCchhcCCchHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhHhHHHH
Confidence            9999999999999886   7899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCCcccccceeeeccC
Q 048051          269 LAEIKRWWKQLGLVDKLGFGRDRPLECFLWT  299 (299)
Q Consensus       269 L~~lsrWWk~l~l~~~L~FaRdR~ve~Yfw~  299 (299)
                      |++++|||+++||.++|||||||++|||||+
T Consensus       240 l~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~  270 (542)
T cd00684         240 LKILSRWWKDLDLASKLPFARDRLVECYFWA  270 (542)
T ss_pred             HHHHhHHHHhcCCcccCCcccchhHHHHHHH
Confidence            9999999999999988999999999999995

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query299
3g4d_A 554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 3e-48
3lz9_A 550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 1e-42
3m01_A 550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 4e-42
5eau_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 4e-42
4di5_A 535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 4e-42
1hxc_A 548 Crystal Structure Of Teas C440w Length = 548 6e-42
5eas_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 6e-42
5eat_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 6e-42
1hx9_A 548 Crystal Structure Of Teas W273s Form 1 Length = 548 8e-41
1hxg_A 548 Crystal Structure Of Teas W273sC440W Length = 548 9e-41
3n0f_A 555 Crystal Structure Of Isoprene Synthase From Grey Po 4e-40
2j5c_A 569 Rational Conversion Of Substrate And Product Specif 7e-38
2ong_A 543 Crystal Structure Of Of Limonene Synthase With 2- F 5e-36
1n1b_A 549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 3e-31
3p5p_A 764 Crystal Structure Of Taxadiene Synthase From Pacifi 1e-21
3sae_A 817 Structure Of A Three-Domain Sesquiterpene Synthase: 1e-20
3s9v_A 785 Abietadiene Synthase From Abies Grandis Length = 78 1e-20
3pya_A 727 Crystal Structure Of Ent-Copalyl Diphosphate Syntha 6e-16
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure 
Iteration: 1

 Score =  188 bits (477), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 97/249 (38%), Positives = 144/249 (57%), Gaps = 5/249 (2%)
Query: 50  FKTSPRQNVLTYEGDRGTKSLEEELQERTRKALRKSSNDPTATMKLIDTIQRLGIGYHFE 109
           F   P +N+     D  T+   ++L+E  RK +     + T  +  ID++QRLG+ YHF 
Sbjct: 36  FLNCPDKNI-----DAETEKRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFT 90
Query: 110 DEIMERLERFSDGDAAGEENLFENALRFRLLRHNGLPACTDIFKKFINKEGKLKESVSKD 169
            EI + LE     +   E +L+  ++RFRLLR +G     D+F KF +++G  K SV+ D
Sbjct: 91  KEIEDELENIYHNNNDAENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSD 150
Query: 170 TRGMLSLYEASYLATQDKDILFEAMEFTKTELTQSVSLMDSQSSRHVVQALALPRHLRMS 229
            RG+L LY+ASYL    +DIL EA+ FT   L+ +V+ +D   S  V  AL       + 
Sbjct: 151 VRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLP 210
Query: 230 RSEAGNYINEYSQSWNHDQTLLQLAKSDFNMVQSLHQRELAEIKRWWKQLGLVDKLGFGR 289
           R EA +Y++ Y    +H++ LL+ AK DFNM+Q LH++EL+EI RWWK L    KL + R
Sbjct: 211 RVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYAR 270
Query: 290 DRPLECFLW 298
           DR +E + W
Sbjct: 271 DRVVEGYFW 279
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query299
2j5c_A 569 1,8-cineole synthase; terpene synthases, 1, monote 6e-68
3g4d_A 554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 3e-66
3m00_A 550 Aristolochene synthase; plant terpenoid cyclase, l 2e-65
3n0f_A 555 Isoprene synthase; terpene cyclase fold, hemiterpe 1e-63
2ong_A 543 4S-limonene synthase; monoterpene synthase, monote 1e-63
1n1b_A 549 (+)-bornyl diphosphate synthase; terpene synthase 1e-62
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 2e-48
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 5e-47
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 3e-46
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 5e-43
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
 Score =  220 bits (561), Expect = 6e-68
 Identities = 88/231 (38%), Positives = 131/231 (56%), Gaps = 4/231 (1%)

Query: 72  EELQERTRKALRKSSNDPTATMKLIDTIQRLGIGYHFEDEIMERLER-FSDGDAAGEENL 130
             + ++ +  + +   D    ++LID ++RLGI  HFE EI+E L   +   +   E +L
Sbjct: 67  AGMIDQVKM-MLQEEVDSIRRLELIDDLRRLGISCHFEREIVEILNSKYYTNNEIDERDL 125

Query: 131 FENALRFRLLRHNGLPACTDIFKKFINKEGK-LKESVSKDTRGMLSLYEASYLATQDKDI 189
           +  ALRFRLLR        ++F  F N +G   K S+  DTRG+L LYEAS+L+ Q ++ 
Sbjct: 126 YSTALRFRLLRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGEET 185

Query: 190 LFEAMEFTKTELTQSVSL-MDSQSSRHVVQALALPRHLRMSRSEAGNYINEYSQSWNHDQ 248
           L  A +F    L + V +  D      + +AL LP H R+    A ++I+ Y +  + + 
Sbjct: 186 LRLARDFATKFLQKRVLVDKDINLLSSIERALELPTHWRVQMPNARSFIDAYKRRPDMNP 245

Query: 249 TLLQLAKSDFNMVQSLHQRELAEIKRWWKQLGLVDKLGFGRDRPLECFLWT 299
           T+L+LAK DFNMVQ+  Q+EL E  RWW   GLV +L F RDR +EC+ WT
Sbjct: 246 TVLELAKLDFNMVQAQFQQELKEASRWWNSTGLVHELPFVRDRIVECYYWT 296
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query299
3g4d_A 554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3m00_A 550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
3n0f_A 555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
2ong_A 543 4S-limonene synthase; monoterpene synthase, monote 100.0
2j5c_A 569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
1n1b_A 549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 100.0
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 95.95
3bny_A 320 Aristolochene synthase; sesquiterpene cyclase, iso 95.92
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
Probab=100.00  E-value=3.4e-91  Score=703.83  Aligned_cols=257  Identities=37%  Similarity=0.635  Sum_probs=235.6

Q ss_pred             CCCCCC-CCCCCCCc---cccC--CCCchhhHHHHHHHHHHHHHHHhhhCCCCccchhhHHHHHHHhCCccccHHHHHHH
Q 048051           42 LPKPLV-TDFKTSPR---QNVL--TYEGDRGTKSLEEELQERTRKALRKSSNDPTATMKLIDTIQRLGIGYHFEDEIMER  115 (299)
Q Consensus        42 ~~~~r~-a~~~ps~W---fl~~--~~~~~~~~~~~~~~Lk~eVr~~l~~~~~d~~~~L~lID~LqRLGI~yhFe~EI~~~  115 (299)
                      .+..|| |||+||+|   |+++  ++..+.+.++++ +||++||+||.....|++++|+|||+||||||+|||++||+++
T Consensus        18 ~~~~R~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~e-~Lk~eVr~~l~~~~~~~~~~l~lID~lqrLGi~~hF~~EI~~~   96 (554)
T 3g4d_A           18 KDEMRPKADFQPSIWGDLFLNCPDKNIDAETEKRHQ-QLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDE   96 (554)
T ss_dssp             -------CCCCCCTTTTTTTSCCC---CHHHHHHHH-HHHHHHHHHHHSCCSSHHHHHHHHHHHHHTTCGGGCHHHHHHH
T ss_pred             CCCCCCCCCCCccccccccccCCCchhhHHHHHHHH-HHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHHH
Confidence            445677 99999999   8873  445667899999 9999999999753469999999999999999999999999999


Q ss_pred             HHHhHcCCCCCCCchhhHHHHHHHHhhcCccccccccccccccccccccccccchHHHHhHhhhhccCCCCchHHHHHHH
Q 048051          116 LERFSDGDAAGEENLFENALRFRLLRHNGLPACTDIFKKFINKEGKLKESVSKDTRGMLSLYEASYLATQDKDILFEAME  195 (299)
Q Consensus       116 L~~iy~~~~~~~~DL~~~AL~FRLLRqhGY~VS~DvF~~F~d~~G~F~~~l~~Dv~glLsLYeAS~l~~~gE~iLdeA~~  195 (299)
                      |++||+.......|||+|||+|||||||||+||||||++|+|++|+|++++.+|++|||+|||||||++|||+|||||+.
T Consensus        97 L~~i~~~~~~~~~dl~~~al~FRlLR~hGy~VS~dvf~~F~~~~g~F~~~l~~d~~glL~LYeAs~l~~~gE~iLdeA~~  176 (554)
T 3g4d_A           97 LENIYHNNNDAENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAIS  176 (554)
T ss_dssp             HHHHHHSCCCTTCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCHHHHHCHHHHHHHHHHHTTCCTTCHHHHHHHH
T ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHhcCCCCChhHHhhhcccCCCcccccccchHHHHHHHHHHhCCCCCcHHHHHHHH
Confidence            99999862122369999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcCCCCccHHHHHHhccCCccCCcchhhhhhhhhhcccCCcccHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 048051          196 FTKTELTQSVSLMDSQSSRHVVQALALPRHLRMSRSEAGNYINEYSQSWNHDQTLLQLAKSDFNMVQSLHQRELAEIKRW  275 (299)
Q Consensus       196 Fs~~~L~~~~~~~~~~L~~~V~~aL~~P~h~~l~RleaR~yI~~Y~~~~~~n~~lLeLAKlDFn~~Qs~hq~EL~~lsrW  275 (299)
                      ||++||++.++.++++|+++|+|||++|+|+++||+|||+||+.|++++++|+.||||||+|||+||++||+||++++||
T Consensus       177 fs~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rW  256 (554)
T 3g4d_A          177 FTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHRKELSEICRW  256 (554)
T ss_dssp             HHHHHHHHHSTTCCTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCchHHHHHHHHhCCCccCCchHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            99999999888788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCCCcccccceeeeccC
Q 048051          276 WKQLGLVDKLGFGRDRPLECFLWT  299 (299)
Q Consensus       276 Wk~l~l~~~L~FaRdR~ve~Yfw~  299 (299)
                      ||++||+++|||||||+||||||+
T Consensus       257 wk~~~l~~~L~faRdr~ve~yfw~  280 (554)
T 3g4d_A          257 WKDLDFQRKLPYARDRVVEGYFWI  280 (554)
T ss_dssp             HHHHCHHHHCTTCCCCHHHHHHHH
T ss_pred             HHHcCCcccCCchHHHHHHHHHHH
Confidence            999999999999999999999995
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 299
d5easa1197 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase 2e-47
d1n1ba1207 a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha 3e-46
d5easa2 328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 2e-23
d1n1ba2 328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 4e-23
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score =  155 bits (394), Expect = 2e-47
 Identities = 64/169 (37%), Positives = 95/169 (56%), Gaps = 1/169 (0%)

Query: 72  EELQERTRKALRKSSNDPTATMKLIDTIQRLGIGYHFEDEIMERLERFSDGDAAGEENLF 131
           E L+E+TR  L  +      T+ LID I+RLGI YHFE EI E L++  + ++    +L 
Sbjct: 24  EALKEQTRSMLLATGRKLADTLNLIDIIERLGISYHFEKEIDEILDQIYNQNS-NCNDLC 82

Query: 132 ENALRFRLLRHNGLPACTDIFKKFINKEGKLKESVSKDTRGMLSLYEASYLATQDKDILF 191
            +AL+FRLLR +G     +IF KF ++ GK KES++ D  G+L+LYEAS++ T   DIL 
Sbjct: 83  TSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILE 142

Query: 192 EAMEFTKTELTQSVSLMDSQSSRHVVQALALPRHLRMSRSEAGNYINEY 240
           +A+ F+   L  +   + S     V  AL    H  + R E   +I+  
Sbjct: 143 DALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSI 191
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207 Back     information, alignment and structure
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query299
d1n1ba1207 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa1197 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

Probab=100.00  E-value=3.3e-69  Score=483.03  Aligned_cols=190  Identities=32%  Similarity=0.489  Sum_probs=175.4

Q ss_pred             Cc---ccc---CCCCchhhHHHHHHHHHHHHHHHhhhCCCCccchhhHHHHHHHhCCccccHHHHHHHHHHhHcCC----
Q 048051           54 PR---QNV---LTYEGDRGTKSLEEELQERTRKALRKSSNDPTATMKLIDTIQRLGIGYHFEDEIMERLERFSDGD----  123 (299)
Q Consensus        54 ~W---fl~---~~~~~~~~~~~~~~~Lk~eVr~~l~~~~~d~~~~L~lID~LqRLGI~yhFe~EI~~~L~~iy~~~----  123 (299)
                      +|   |++   +++.++.+.++++ +||++||+||.+ ..|++++|+|||+||||||+|||++||+++|++||+..    
T Consensus         1 iW~~~fl~sl~~~~~~e~~~~r~e-~Lkeevr~ml~~-~~d~~~~L~lID~lqRLGisyhFe~EI~~~L~~i~~~~~~~~   78 (207)
T d1n1ba1           1 LWDSNYIQSLNTPYTEERHLDRKA-ELIVQVRILLKE-KMEPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHKCFH   78 (207)
T ss_dssp             CCCHHHHHHCCCSTTSHHHHHHHH-HHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCHHHH
T ss_pred             CCCchHHHhCCCCcccHHHHHHHH-HHHHHHHHHHHh-ccCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhchhcc
Confidence            68   775   5678888999999 999999999987 67999999999999999999999999999999999752    


Q ss_pred             --CCCCCchhhHHHHHHHHhhcCcccccccccccccccc-ccccccccchHHHHhHhhhhccCCCCchHHHHHHHHHHHH
Q 048051          124 --AAGEENLFENALRFRLLRHNGLPACTDIFKKFINKEG-KLKESVSKDTRGMLSLYEASYLATQDKDILFEAMEFTKTE  200 (299)
Q Consensus       124 --~~~~~DL~~~AL~FRLLRqhGY~VS~DvF~~F~d~~G-~F~~~l~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Fs~~~  200 (299)
                        .....|||+|||+|||||||||+||||||++|+|++| +|++++.+||+|||+||||||++++||+|||+|+.||++|
T Consensus        79 ~~~~~~~DL~~~AL~FRLLRqhGy~VS~dvF~~F~d~~g~~fk~~l~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~  158 (207)
T d1n1ba1          79 NNEVEKMDLYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKC  158 (207)
T ss_dssp             HCCCCSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSSBCGGGGGCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHH
T ss_pred             ccccccccHHHHHHHHHHHHHcCCCCCHHHHHHhccCCCCchhhhHHHhHHHHHHHHHHHccCCCchHHHHHHHHHHHHH
Confidence              2235699999999999999999999999999999999 9999999999999999999999999999999999999999


Q ss_pred             HHhhhc----CCCCccHHHHHHhccCCccCCcchhhhhhhhhhcccCCc
Q 048051          201 LTQSVS----LMDSQSSRHVVQALALPRHLRMSRSEAGNYINEYSQSWN  245 (299)
Q Consensus       201 L~~~~~----~~~~~L~~~V~~aL~~P~h~~l~RleaR~yI~~Y~~~~~  245 (299)
                      |+++++    .++++|+++|.|||++|+||+|||+||||||+.|+++++
T Consensus       159 L~~~l~~~~~~~~~~l~~~V~~AL~~P~~~~l~rleaR~yI~~Ye~~~d  207 (207)
T d1n1ba1         159 LQKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPD  207 (207)
T ss_dssp             HHHHTC------CHHHHHHHHHHHHSCGGGCCTTTSHHHHHHHHHHCTT
T ss_pred             HHHHHHhcccccchhHHHHHHHHhCCCccCCCcHHHHHHhHHHhCCCCC
Confidence            999874    357899999999999999999999999999999998763
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure