Citrus Sinensis ID: 048052

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-
Protein Sequence
ARRAFRALKGIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVRHSNIGLEVGKTCTPLMLLVIS
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcccccEEEEEEc
Coil and Loop (DISEMBL)
ARRAFRALKGIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRgrkvrhsniglevgktctPLMLLVIS
Flexible Loop (DISEMBL)
ARRAFRALKGIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRkvrhsniglevgktctplmllvis
Low Complexity Region (SEG)
ARRAFRALKGIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVRHSNIGLEVGKTCTPLMLLVIS
Disordered region (IsUnstruct)
****FRALKGIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVRHSNIGLEVGKTCTPLMLLVI*
Disordered Region (DISOPRED)
ARRAFRALKGIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVR*********************LL***
Disordered Region (DISEMBL)
ARRAFRALKGIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVRHSNIGLEVGKTCTPLMLLVIS
Disordered Region (DISPRO)
*RRAFRALKGIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVRHSNIGLEVGKTCTPLMLLVIS
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
ARRAFRALKGIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVRHSNIGLEVGKTCTPLMLLVIS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	71	2.2.26 [Sep-21-2011]
Q8L4D8	587	Protein IQ-DOMAIN 31 OS=A	no	no	0.873	0.105	0.693	2e-19
Q8LPG9	668	Protein IQ-DOMAIN 14 OS=A	no	no	0.647	0.068	0.4	4e-07
Q9FXI5	794	Protein IQ-DOMAIN 32 OS=A	no	no	0.605	0.054	0.510	1e-06
Q9SF32	454	Protein IQ-DOMAIN 1 OS=Ar	no	no	0.732	0.114	0.403	0.0002

>sp|Q8L4D8|IQD31_ARATH Protein IQ-DOMAIN 31 OS=Arabidopsis thaliana GN=IQD31 PE=1 SV=1

 Score = 94.0 bits (232), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/62 (69%), Positives = 54/62 (87%)

Query: 1   ARRAFRALKGIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVRHSNIGLEVGK 60
           ARRAF ALKGIIRLQALIRGHLVRRQA ATL +++G+V+LQA  RGR++R S+IG++V +
Sbjct: 128 ARRAFWALKGIIRLQALIRGHLVRRQAVATLFSVMGIVRLQAFARGREIRKSDIGVQVYR 187

Query: 61  TC 62
            C
Sbjct: 188 KC 189

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPG9|IQD14_ARATH Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 38/50 (76%)

Query: 1   ARRAFRALKGIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVR 50
           AR++FRALKG++RLQ ++RG+ V+RQ    +  M  +V++Q+ ++ R+++
Sbjct: 337 ARKSFRALKGLVRLQGVVRGYSVKRQTINAMKYMQQVVRVQSQIQSRRIK 386

May be involved in cooperative interactions with calmodulins or calmodulin-like proteins. May associate with nucleic acids and regulate gene expression at the transcriptional or post-transcriptional level.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FXI5|IQD32_ARATH Protein IQ-DOMAIN 32 OS=Arabidopsis thaliana GN=IQD32 PE=1 SV=3

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/47 (51%), Positives = 32/47 (68%)

Query: 1   ARRAFRALKGIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGR 47
           ARR     K +I+LQA +RGHLVR QA  +L  +  +VK+QA+VR R
Sbjct: 230 ARRELLRSKKVIKLQAAVRGHLVRSQAMGSLRCVQAIVKMQAMVRAR 276

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SF32|IQD1_ARATH Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 34/52 (65%)

Query: 1   ARRAFRALKGIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVRHS 52
           ARR  + ++G  RL+ L+ G +V+RQA  TL  M  L ++Q+ +R R++R S
Sbjct: 123 ARRESQVMRGQERLKLLMEGSVVQRQAAITLKCMQTLSRVQSQIRSRRIRMS 174

Modulates expression of glucosinolate pathway genes. May associate with nucleic acids and regulate gene expression at the transcriptional or post-transcriptional level.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	71
225456707	573	PREDICTED: protein IQ-DOMAIN 31-like [Vi	0.873	0.108	0.774	3e-20
297734008	542	unnamed protein product [Vitis vinifera]	0.873	0.114	0.774	3e-20
449469462	599	PREDICTED: protein IQ-DOMAIN 31-like [Cu	0.873	0.103	0.790	5e-20
449520463	599	PREDICTED: protein IQ-DOMAIN 31-like [Cu	0.873	0.103	0.790	5e-20
356562818	587	PREDICTED: protein IQ-DOMAIN 31-like [Gl	0.915	0.110	0.753	1e-19
147841475	519	hypothetical protein VITISV_033312 [Viti	0.873	0.119	0.774	2e-19
357477495	584	IQ domain-containing protein [Medicago t	0.943	0.114	0.716	2e-19
356516764	584	PREDICTED: protein IQ-DOMAIN 31-like [Gl	0.873	0.106	0.741	2e-19
357477497	488	IQ domain-containing protein [Medicago t	0.943	0.137	0.716	4e-19
30686055	572	protein IQ-domain 30 [Arabidopsis thalia	0.873	0.108	0.693	6e-19

>gi|225456707|ref|XP_002274035.1| PREDICTED: protein IQ-DOMAIN 31-like [Vitis vinifera]

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/62 (77%), Positives = 53/62 (85%)

Query: 1   ARRAFRALKGIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVRHSNIGLEVGK 60
           ARRAFRALKGIIRLQALIRGHLVRRQA  TL  MLG+VK+QAL RGR++RHS +GL V K
Sbjct: 121 ARRAFRALKGIIRLQALIRGHLVRRQAICTLYCMLGIVKIQALARGRRIRHSELGLRVNK 180

Query: 61  TC 62
            C
Sbjct: 181 KC 182

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734008|emb|CBI15255.3| unnamed protein product [Vitis vinifera]

 Score =  102 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/62 (77%), Positives = 53/62 (85%)

Query: 1   ARRAFRALKGIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVRHSNIGLEVGK 60
           ARRAFRALKGIIRLQALIRGHLVRRQA  TL  MLG+VK+QAL RGR++RHS +GL V K
Sbjct: 171 ARRAFRALKGIIRLQALIRGHLVRRQAICTLYCMLGIVKIQALARGRRIRHSELGLRVNK 230

Query: 61  TC 62
            C
Sbjct: 231 KC 232

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469462|ref|XP_004152439.1| PREDICTED: protein IQ-DOMAIN 31-like [Cucumis sativus]

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 49/62 (79%), Positives = 53/62 (85%)

Query: 1   ARRAFRALKGIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVRHSNIGLEVGK 60
           ARRAFRALKGIIRLQALIRGHLVRRQA ATL  MLG+VK QA+ RGR VR S++GLEV K
Sbjct: 128 ARRAFRALKGIIRLQALIRGHLVRRQAAATLCCMLGIVKFQAIARGRSVRLSDVGLEVQK 187

Query: 61  TC 62
            C
Sbjct: 188 KC 189

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520463|ref|XP_004167253.1| PREDICTED: protein IQ-DOMAIN 31-like [Cucumis sativus]

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 49/62 (79%), Positives = 53/62 (85%)

Query: 1   ARRAFRALKGIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVRHSNIGLEVGK 60
           ARRAFRALKGIIRLQALIRGHLVRRQA ATL  MLG+VK QA+ RGR VR S++GLEV K
Sbjct: 128 ARRAFRALKGIIRLQALIRGHLVRRQAAATLCCMLGIVKFQAIARGRSVRLSDVGLEVQK 187

Query: 61  TC 62
            C
Sbjct: 188 KC 189

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562818|ref|XP_003549665.1| PREDICTED: protein IQ-DOMAIN 31-like [Glycine max]

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/65 (75%), Positives = 54/65 (83%)

Query: 1   ARRAFRALKGIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVRHSNIGLEVGK 60
           ARRAFRALKGIIRLQALIRGHLVRRQA ATL +M G+VK QALVRG  VRHSN+G E+ +
Sbjct: 116 ARRAFRALKGIIRLQALIRGHLVRRQAVATLCSMYGIVKFQALVRGGIVRHSNVGSEIQE 175

Query: 61  TCTPL 65
            C  L
Sbjct: 176 KCNIL 180

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147841475|emb|CAN62103.1| hypothetical protein VITISV_033312 [Vitis vinifera]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/62 (77%), Positives = 53/62 (85%)

Query: 1   ARRAFRALKGIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVRHSNIGLEVGK 60
           ARRAFRALKGIIRLQALIRGHLVRRQA  TL  MLG+VK+QAL RGR++RHS +GL V K
Sbjct: 127 ARRAFRALKGIIRLQALIRGHLVRRQAICTLYCMLGIVKIQALARGRRIRHSELGLRVNK 186

Query: 61  TC 62
            C
Sbjct: 187 KC 188

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477495|ref|XP_003609033.1| IQ domain-containing protein [Medicago truncatula] gi|217074616|gb|ACJ85668.1| unknown [Medicago truncatula] gi|355510088|gb|AES91230.1| IQ domain-containing protein [Medicago truncatula]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/67 (71%), Positives = 55/67 (82%)

Query: 1   ARRAFRALKGIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVRHSNIGLEVGK 60
           ARRAFRALKGIIRLQALIRGHLVRRQA ATL  M G+VKLQALVRG+ +R S++G E+ +
Sbjct: 115 ARRAFRALKGIIRLQALIRGHLVRRQAVATLCCMYGIVKLQALVRGQIIRKSDVGFEIHE 174

Query: 61  TCTPLML 67
            C  L L
Sbjct: 175 KCNLLKL 181

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516764|ref|XP_003527063.1| PREDICTED: protein IQ-DOMAIN 31-like [Glycine max]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/62 (74%), Positives = 52/62 (83%)

Query: 1   ARRAFRALKGIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVRHSNIGLEVGK 60
           ARRAFRALKGIIRLQALIRGHLVRRQA  TL  M G+VKLQALVRG ++R SN+G E+ +
Sbjct: 114 ARRAFRALKGIIRLQALIRGHLVRRQAVVTLCCMYGIVKLQALVRGGRIRQSNVGFEIHE 173

Query: 61  TC 62
            C
Sbjct: 174 KC 175

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477497|ref|XP_003609034.1| IQ domain-containing protein [Medicago truncatula] gi|355510089|gb|AES91231.1| IQ domain-containing protein [Medicago truncatula]

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/67 (71%), Positives = 55/67 (82%)

Query: 1  ARRAFRALKGIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVRHSNIGLEVGK 60
          ARRAFRALKGIIRLQALIRGHLVRRQA ATL  M G+VKLQALVRG+ +R S++G E+ +
Sbjct: 19 ARRAFRALKGIIRLQALIRGHLVRRQAVATLCCMYGIVKLQALVRGQIIRKSDVGFEIHE 78

Query: 61 TCTPLML 67
           C  L L
Sbjct: 79 KCNLLKL 85

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30686055|ref|NP_173318.2| protein IQ-domain 30 [Arabidopsis thaliana] gi|79318194|ref|NP_001031067.1| protein IQ-domain 30 [Arabidopsis thaliana] gi|63003836|gb|AAY25447.1| At1g18840 [Arabidopsis thaliana] gi|332191648|gb|AEE29769.1| protein IQ-domain 30 [Arabidopsis thaliana] gi|332191649|gb|AEE29770.1| protein IQ-domain 30 [Arabidopsis thaliana]

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 43/62 (69%), Positives = 55/62 (88%)

Query: 1   ARRAFRALKGIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVRHSNIGLEVGK 60
           ARRAF+ LKGIIRLQALIRGH+VRRQA +TL  ++G+V+LQAL RGR++RHS+IG+EV +
Sbjct: 124 ARRAFKILKGIIRLQALIRGHMVRRQAVSTLCCVMGIVRLQALARGREIRHSDIGVEVQR 183

Query: 61  TC 62
            C
Sbjct: 184 KC 185

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	71
TAIR|locus:2034929	572	IQD30 "AT1G18840" [Arabidopsis	0.873	0.108	0.693	8.5e-18
TAIR|locus:2019205	587	IQD31 "AT1G74690" [Arabidopsis	0.943	0.114	0.676	8.4e-17
TAIR|locus:2012507	664	IQD28 "AT1G14380" [Arabidopsis	0.845	0.090	0.683	1.2e-14
TAIR|locus:2090409	422	IQD5 "AT3G22190" [Arabidopsis	0.704	0.118	0.66	2.4e-11
TAIR|locus:2058862	636	IQD29 "AT2G02790" [Arabidopsis	0.887	0.099	0.571	3e-11
TAIR|locus:2130200	387	IQD19 "AT4G14750" [Arabidopsis	0.704	0.129	0.62	5.4e-11
TAIR|locus:2057459	416	IQD6 "AT2G26180" [Arabidopsis	0.845	0.144	0.6	6.3e-11
TAIR|locus:2088319	389	IQD26 "AT3G16490" [Arabidopsis	0.760	0.138	0.481	3e-09
TAIR|locus:2200945	527	IQD18 "AT1G01110" [Arabidopsis	0.774	0.104	0.545	1.1e-08
TAIR|locus:2134628	534	iqd17 "AT4G00820" [Arabidopsis	0.774	0.102	0.545	1.1e-08

TAIR|locus:2034929 IQD30 "AT1G18840" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 8.5e-18, P = 8.5e-18
 Identities = 43/62 (69%), Positives = 55/62 (88%)

Query:     1 ARRAFRALKGIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVRHSNIGLEVGK 60
             ARRAF+ LKGIIRLQALIRGH+VRRQA +TL  ++G+V+LQAL RGR++RHS+IG+EV +
Sbjct:   124 ARRAFKILKGIIRLQALIRGHMVRRQAVSTLCCVMGIVRLQALARGREIRHSDIGVEVQR 183

Query:    61 TC 62
              C
Sbjct:   184 KC 185

GO:0005516 "calmodulin binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2019205 IQD31 "AT1G74690" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 8.4e-17, P = 8.4e-17
 Identities = 46/68 (67%), Positives = 57/68 (83%)

Query:     1 ARRAFRALKGIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVRHSNIGLEVGK 60
             ARRAF ALKGIIRLQALIRGHLVRRQA ATL +++G+V+LQA  RGR++R S+IG++V +
Sbjct:   128 ARRAFWALKGIIRLQALIRGHLVRRQAVATLFSVMGIVRLQAFARGREIRKSDIGVQVYR 187

Query:    61 TCTPLMLL 68
              C  L LL
Sbjct:   188 KCR-LQLL 194

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2012507 IQD28 "AT1G14380" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 1.2e-14, P = 1.2e-14
 Identities = 41/60 (68%), Positives = 48/60 (80%)

Query:     1 ARRAFRALKGIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVRHSNIGLEVGK 60
             ARRAFR LKGIIRLQA+IRGHLVRRQA AT   + G+VK QALVRG+K R S+I ++  K
Sbjct:   109 ARRAFRTLKGIIRLQAVIRGHLVRRQAIATYSCIWGIVKFQALVRGQKARSSDIAIQFQK 168

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2090409 IQD5 "AT3G22190" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 2.4e-11, P = 2.4e-11
 Identities = 33/50 (66%), Positives = 40/50 (80%)

Query:     1 ARRAFRALKGIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVR 50
             ARRA RALKG++RLQAL+RGH VR+QA  TL  M  LV++QA VR R+VR
Sbjct:   103 ARRALRALKGLVRLQALVRGHAVRKQAAVTLRCMQALVRVQARVRARRVR 152

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2058862 IQD29 "AT2G02790" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 3.0e-11, P = 3.0e-11
 Identities = 36/63 (57%), Positives = 45/63 (71%)

Query:     1 ARRAFRALKGIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVRHSNIGLEVGK 60
             AR   + LKGI R+QA+IRGHLVRRQA AT   + G+VK+QALVRG+K R S    ++ K
Sbjct:   122 AREESQNLKGITRVQAVIRGHLVRRQAVATYSCIWGIVKVQALVRGKKARSSETVAQLQK 181

Query:    61 TCT 63
             T T
Sbjct:   182 TNT 184

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2130200 IQD19 "AT4G14750" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 5.4e-11, P = 5.4e-11
 Identities = 31/50 (62%), Positives = 41/50 (82%)

Query:     1 ARRAFRALKGIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVR 50
             AR+A RALKG+++LQAL+RGHLVR+QATATL  M  L+ LQA  R +++R
Sbjct:   120 ARKALRALKGLVKLQALVRGHLVRKQATATLRCMQALITLQAKAREQRIR 169

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2057459 IQD6 "AT2G26180" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 6.3e-11, P = 6.3e-11
 Identities = 36/60 (60%), Positives = 43/60 (71%)

Query:     1 ARRAFRALKGIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVRHSNIGLEVGK 60
             ARRA RALKGI+RLQAL+RG  VR+QA  TL  M  LV++QA VR R+VR +  G  V K
Sbjct:    99 ARRALRALKGIVRLQALVRGRQVRKQAAVTLRCMQALVRVQARVRARRVRMTVEGQAVQK 158

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2088319 IQD26 "AT3G16490" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 3.0e-09, P = 3.0e-09
 Identities = 26/54 (48%), Positives = 42/54 (77%)

Query:     1 ARRAFRALKGIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVRHSNI 54
             AR+A RALKG+++LQAL+RG+LVR++A  TL +M  L++ Q  VR +++  +N+
Sbjct:   122 ARKALRALKGLVKLQALVRGYLVRKRAAETLHSMQALIRAQTSVRSQRINRNNM 175

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2200945 IQD18 "AT1G01110" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 30/55 (54%), Positives = 41/55 (74%)

Query:     1 ARRAFRALKGIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVRHSNIG 55
             ARRA RALKG+++LQAL+RGH VR+QA  TL  M  LV++Q+ V  ++ R S+ G
Sbjct:   136 ARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQSRVLDQRKRLSHDG 190

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2134628 iqd17 "AT4G00820" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 30/55 (54%), Positives = 41/55 (74%)

Query:     1 ARRAFRALKGIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVRHSNIG 55
             ARRA RALKG+++LQAL+RGH VR+QA  TL  M  LV++Q+ V  ++ R S+ G
Sbjct:   147 ARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQSRVLDQRKRLSHDG 201

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	IQD30	IQD30; calmodulin binding; IQD30; FUNCTIONS IN- calmodulin binding; INVOLVED IN- biological_process unknown; LOCATED IN- vacuole; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- IQ calmodulin-binding region (InterPro-IPR000048); BEST Arabidopsis thaliana protein match is- IQD31 (IQ-domain 31); calmodulin binding (TAIR-AT1G74690.1); Has 2925 Blast hits to 2231 proteins in 269 species- Archae - 4; Bacteria - 220; Metazoa - 845; Fungi - 205; Plants - 455; Viruses - 13; Other Eukaryotes - 1183 (source- NCBI BLink). (572 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	IQD12	IQD12 (IQ-domain 12); calmodulin binding; IQ-domain 12 (IQD12); FUNCTIONS IN- calmodulin bindin [...] (403 aa)							•		0.871
	iqd9	iqd9 (IQ-domain 9); calmodulin binding; IQ-domain 9 (iqd9); FUNCTIONS IN- calmodulin binding; I [...] (263 aa)							•		0.871
	AT1G23060	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (367 aa)							•		0.788
	AT1G65010	unknown protein; unknown protein; LOCATED IN- chloroplast; EXPRESSED IN- 22 plant structures; E [...] (1345 aa)				•					0.651
	IQD31	IQD31 (IQ-domain 31); calmodulin binding; IQ-domain 31 (IQD31); FUNCTIONS IN- calmodulin bindin [...] (587 aa)				•			•	•	0.603
	AtGH9B7	AtGH9B7 (Arabidopsis thaliana glycosyl hydrolase 9B7); catalytic/ hydrolase, hydrolyzing O-glyc [...] (525 aa)				•					0.467
	IRK	leucine-rich repeat transmembrane protein kinase, putative; leucine-rich repeat transmembrane p [...] (964 aa)				•					0.411
	AT5G64030	dehydration-responsive protein-related; dehydration-responsive protein-related; INVOLVED IN- bi [...] (829 aa)				•					0.409
	IQD18	IQD18 (IQ-domain 18); IQ-domain 18 (IQD18); FUNCTIONS IN- molecular_function unknown; EXPRESSED [...] (527 aa)							•	•	0.406
	Iqd4	Iqd4 (IQ-domain 4); calmodulin binding; IQ-domain 4 (Iqd4); FUNCTIONS IN- calmodulin binding; E [...] (527 aa)							•	•	0.404

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	71
PF00612	21	IQ: IQ calmodulin-binding motif; InterPro: IPR0000	96.19
smart00015	26	IQ Short calmodulin-binding motif containing conse	94.52
PTZ00014	821	myosin-A; Provisional	80.74

>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K

Probab=96.19  E-value=0.0083  Score=28.81  Aligned_cols=18  Identities=39%  Similarity=0.582  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 048052            9 KGIIRLQALIRGHLVRRQ   26 (71)
Q Consensus         9 kg~vrLQalvRG~~VRrQ   26 (71)
                      ++++.||+.+||+.+|++
T Consensus         2 ~aai~iQ~~~R~~~~Rk~   19 (21)
T PF00612_consen    2 KAAIIIQSYWRGYLARKR   19 (21)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            578999999999999995

The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....

>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues

Probab=94.52  E-value=0.056  Score=26.89  Aligned_cols=20  Identities=35%  Similarity=0.459  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 048052            8 LKGIIRLQALIRGHLVRRQA   27 (71)
Q Consensus         8 Lkg~vrLQalvRG~~VRrQa   27 (71)
                      -+.++.||+.+||+.+|+..
T Consensus         3 ~~aa~~IQa~~Rg~~~r~~y   22 (26)
T smart00015        3 TRAAIIIQAAWRGYLARKRY   22 (26)
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            36789999999999999953

Calmodulin-binding motif.

>PTZ00014 myosin-A; Provisional

Probab=80.74  E-value=5.3  Score=34.25  Aligned_cols=38  Identities=29%  Similarity=0.305  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048052           11 IIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVRH   51 (71)
Q Consensus        11 ~vrLQalvRG~~VRrQa~~tLr~mqalvr~Qa~vR~rrvr~   51 (71)
                      +..+|+.+||+..|+.-.   +..++++.+|+-+|+...+.
T Consensus       780 ~~~iq~~~r~~~~r~~~~---~~~~~~~~iQ~~~R~~l~~~  817 (821)
T PTZ00014        780 VSVLEALILKIKKKRKVR---KNIKSLVRIQAHLRRHLVIA  817 (821)
T ss_pred             HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence            568999999999999543   33789999999999987764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	71
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	4e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-05
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	2e-04
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	3e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	7e-04

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837

 Score = 38.5 bits (90), Expect = 4e-05
 Identities = 16/49 (32%), Positives = 22/49 (44%)

Query: 2   RRAFRALKGIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVR 50
            R  R  K I   QA IRG+L+R+         +GL  +Q  +R   V 
Sbjct: 773 MRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVL 821

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 37.9 bits (88), Expect = 7e-05
 Identities = 14/65 (21%), Positives = 23/65 (35%)

Query: 2   RRAFRALKGIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVRHSNIGLEVGKT 61
            R  +    II  QA  RG+L R+        +  +  +Q  VR          + +   
Sbjct: 786 ERDLKITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHWPWMXLFFX 845

Query: 62  CTPLM 66
             PL+
Sbjct: 846 IXPLL 850

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 36.6 bits (85), Expect = 2e-04
 Identities = 4/40 (10%), Positives = 15/40 (37%)

Query: 11  IIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVR 50
           + R   L++    ++ +  +      +  +Q+ +   K  
Sbjct: 764 LKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEY 803

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 35.8 bits (83), Expect = 3e-04
 Identities = 6/54 (11%), Positives = 19/54 (35%), Gaps = 5/54 (9%)

Query: 1   ARRAF----RALKGIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVR 50
            ++A          I  +Q+ +  H   ++          + +L+A+    + +
Sbjct: 776 DKQASLESRDFGDSIESVQSFMNAHKEYKKT-EKPPKGQEVSELEAIYNSLQTK 828

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 35.9 bits (83), Expect = 3e-04
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 1   ARRAFRALK-GIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVR 50
            R+ +  ++   I +Q  +RGH  R  AT  L      + +Q   R   VR
Sbjct: 783 MRKKYMRMRRAAITIQRYVRGHQARCYATF-LRRTRAAIIIQKFQRMYVVR 832

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 34.7 bits (80), Expect = 7e-04
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 1   ARRAFRALK---GIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVRH 51
           AR     L+     I +Q   R ++VR++      A    + LQAL+RG  VR+
Sbjct: 806 ARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDAT---IALQALLRGYLVRN 856

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	71
1n2d_C	48	IQ2 and IQ3 motifs from MYO2P, A class V myosin; p	97.73
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	97.35
1wdc_A	64	Scallop myosin; calcium binding protein, muscle pr	96.11
2bl0_A	63	Major plasmodial myosin heavy chain; muscle protei	95.93
1n2d_C	48	IQ2 and IQ3 motifs from MYO2P, A class V myosin; p	95.7
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	95.5
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.2
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	94.26
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	90.67
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	90.04

>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}

Probab=97.73  E-value=0.00022  Score=38.82  Aligned_cols=42  Identities=29%  Similarity=0.358  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048052            9 KGIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVRH   51 (71)
Q Consensus         9 kg~vrLQalvRG~~VRrQa~~tLr~mqalvr~Qa~vR~rrvr~   51 (71)
                      ++++.||+.+||+++|++... ++...+.+.+|+..|+..+|.
T Consensus         4 ~a~i~iQ~~~Rg~l~R~~~~~-~~~~~aai~IQ~~~Rg~~~Rk   45 (48)
T 1n2d_C            4 QAIKYLQNNIKGFIIRQRVND-EMKVNCATLLQAAYRGHSIRA   45 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHH
Confidence            578999999999999997654 455669999999999998875

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}

Probab=97.35  E-value=0.0012  Score=37.08  Aligned_cols=44  Identities=32%  Similarity=0.378  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhh
Q 048052            8 LKGIIRLQALIRGHLVRRQATATLGAM-LGLVKLQALVRGRKVRHSNIG   55 (71)
Q Consensus         8 Lkg~vrLQalvRG~~VRrQa~~tLr~m-qalvr~Qa~vR~rrvr~~~e~   55 (71)
                      -..++.+|+.+||+..|+    .+..+ .+.+.+|+-+|+...|..-..
T Consensus         5 ~~aai~IQ~~~Rg~~~Rk----~~~~~r~aai~IQ~~~Rg~~aR~~~~~   49 (58)
T 2ix7_C            5 RAACIRIQKTIRGWLLRK----RYLCMQRAAITVQRYVRGYQARCYAKF   49 (58)
T ss_dssp             HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467899999999999999    44444 489999999999988875443

>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A

Probab=96.11  E-value=0.034  Score=31.77  Aligned_cols=46  Identities=28%  Similarity=0.221  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 048052           10 GIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVRHSNIG   55 (71)
Q Consensus        10 g~vrLQalvRG~~VRrQa~~tLr~mqalvr~Qa~vR~rrvr~~~e~   55 (71)
                      -++.+||.+||++.|+.....+....|+.-+|.-+|+.-....-..
T Consensus         8 i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~w~W   53 (64)
T 1wdc_A            8 IISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQW   53 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChH
Confidence            4679999999999999988888888999999999998776654443

>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=95.93  E-value=0.035  Score=31.71  Aligned_cols=46  Identities=15%  Similarity=0.024  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 048052           10 GIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVRHSNIG   55 (71)
Q Consensus        10 g~vrLQalvRG~~VRrQa~~tLr~mqalvr~Qa~vR~rrvr~~~e~   55 (71)
                      -++.+||.+||++.|+.....+....|+.-+|.-+|+.-....-..
T Consensus         6 i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~w~W   51 (63)
T 2bl0_A            6 IVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNWAW   51 (63)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChH
Confidence            3679999999999999988888888999999999998776654433

>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}

Probab=95.70  E-value=0.011  Score=31.79  Aligned_cols=25  Identities=32%  Similarity=0.380  Sum_probs=19.5

Q ss_pred             hhHHHHH---HHHHHHHHHHHHHHHHHH
Q 048052            2 RRAFRAL---KGIIRLQALIRGHLVRRQ   26 (71)
Q Consensus         2 RralraL---kg~vrLQalvRG~~VRrQ   26 (71)
                      |+.+..+   ++++.+|+.+||+.+|+.
T Consensus        19 R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~   46 (48)
T 1n2d_C           19 RQRVNDEMKVNCATLLQAAYRGHSIRAN   46 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence            4444444   489999999999999984

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}

Probab=95.50  E-value=0.021  Score=31.85  Aligned_cols=27  Identities=26%  Similarity=0.444  Sum_probs=22.1

Q ss_pred             hhHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 048052            2 RRAFRALK-GIIRLQALIRGHLVRRQAT   28 (71)
Q Consensus         2 RralraLk-g~vrLQalvRG~~VRrQa~   28 (71)
                      |+.+..++ +++.+|+.+||+.+|+...
T Consensus        21 Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~   48 (58)
T 2ix7_C           21 RKRYLCMQRAAITVQRYVRGYQARCYAK   48 (58)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666666 8999999999999999543

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=95.20  E-value=0.054  Score=45.50  Aligned_cols=17  Identities=47%  Similarity=0.579  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 048052           35 LGLVKLQALVRGRKVRH   51 (71)
Q Consensus        35 qalvr~Qa~vR~rrvr~   51 (71)
                      .+.+.+|+.+|+...|.
T Consensus       840 ~aai~IQs~~Rg~laRr  856 (1080)
T 2dfs_A          840 DATIALQALLRGYLVRN  856 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            34455555555554443

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=94.26  E-value=0.14  Score=42.99  Aligned_cols=41  Identities=32%  Similarity=0.348  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048052           10 GIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVRH   51 (71)
Q Consensus        10 g~vrLQalvRG~~VRrQa~~tLr~mqalvr~Qa~vR~rrvr~   51 (71)
                      +++.+|+.+||+.+|+... .++...+.+.+|+.+|+...|.
T Consensus       793 aai~IQ~~~Rg~~aR~~~~-~lr~~~AAi~IQs~~Rg~~~Rk  833 (1080)
T 2dfs_A          793 AAITIQRYVRGHQARCYAT-FLRRTRAAIIIQKFQRMYVVRK  833 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccc-ccccchhHHHHHHHHhhHHHHH
Confidence            4455555555555555432 2344445555555555554443

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...

Probab=90.67  E-value=1.1  Score=37.08  Aligned_cols=45  Identities=31%  Similarity=0.293  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048052            9 KGIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVRHSN   53 (71)
Q Consensus         9 kg~vrLQalvRG~~VRrQa~~tLr~mqalvr~Qa~vR~rrvr~~~   53 (71)
                      +-++.+|+.+||++.|+........-.+++.+|.-+|+...+..-
T Consensus       780 ~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~  824 (837)
T 1kk8_A          780 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW  824 (837)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence            346799999999999996655555558999999999998877543

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=90.04  E-value=0.98  Score=37.72  Aligned_cols=44  Identities=25%  Similarity=0.182  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048052            9 KGIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVRHS   52 (71)
Q Consensus         9 kg~vrLQalvRG~~VRrQa~~tLr~mqalvr~Qa~vR~rrvr~~   52 (71)
                      +-++.+|+.+||++.|+.....+..-.+++.+|.-+|+...+..
T Consensus       793 ~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~  836 (1184)
T 1i84_S          793 DVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXH  836 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34679999999999999776666666899999999999877754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	71
d2mysa2	794	c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain	4e-05
d2mysa2	794	c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain	0.001
d1kk8a2	789	c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain	5e-05

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score = 37.0 bits (85), Expect = 4e-05
 Identities = 12/50 (24%), Positives = 19/50 (38%)

Query: 1   ARRAFRALKGIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVR 50
             R  +  + I   QA  RG L+R +  A +     +  +Q  VR     
Sbjct: 728 EMRDDKLAEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNV 777

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score = 33.2 bits (75), Expect = 0.001
 Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 8/49 (16%)

Query: 1   ARRAFRAL----KGIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVR 45
            R  +RA+    + I  +Q  +R  +  +        M    K++ L++
Sbjct: 750 MRVEYRAMVERRESIFCIQYNVRSFMNVK----HWPWMKLFFKIKPLLK 794

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

 Score = 37.0 bits (85), Expect = 5e-05
 Identities = 16/50 (32%), Positives = 22/50 (44%)

Query: 1   ARRAFRALKGIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVR 50
             R  R  K I   QA IRG+L+R+         +GL  +Q  +R   V 
Sbjct: 724 EMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVL 773

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	71
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	93.67
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	89.39

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=93.67  E-value=0.12  Score=39.94  Aligned_cols=45  Identities=24%  Similarity=0.122  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048052            8 LKGIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVRHS   52 (71)
Q Consensus         8 Lkg~vrLQalvRG~~VRrQa~~tLr~mqalvr~Qa~vR~rrvr~~   52 (71)
                      .+.++.+|+.+||++.|+.-..-+..-++.+.+|+-+|+...+..
T Consensus       735 ~~~~~~IQ~~~Rg~l~Rk~~~~~~~~r~a~~~IQ~~~R~~~~~r~  779 (794)
T d2mysa2         735 AEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVKH  779 (794)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            356789999999999999777666667799999999999987654

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=89.39  E-value=0.77  Score=35.31  Aligned_cols=44  Identities=32%  Similarity=0.326  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048052            9 KGIIRLQALIRGHLVRRQATATLGAMLGLVKLQALVRGRKVRHS   52 (71)
Q Consensus         9 kg~vrLQalvRG~~VRrQa~~tLr~mqalvr~Qa~vR~rrvr~~   52 (71)
                      +.++.+|+.+||++.|++-..--..--++..+|..+|+..+|..
T Consensus       732 ~~~~~IQ~~~R~~~~Rk~y~k~r~~~~ai~~iQ~~~R~~~~rr~  775 (789)
T d1kk8a2         732 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN  775 (789)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            45678999999999999433222222378899999999887754