Citrus Sinensis ID: 048079
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 199 | ||||||
| 255569833 | 837 | serine-threonine protein kinase, plant-t | 0.959 | 0.228 | 0.710 | 2e-79 | |
| 338190111 | 830 | lectin-domain receptor-like kinase [Nico | 0.949 | 0.227 | 0.722 | 4e-78 | |
| 255569831 | 457 | S-locus-specific glycoprotein precursor, | 0.959 | 0.417 | 0.715 | 5e-78 | |
| 255569825 | 870 | serine-threonine protein kinase, plant-t | 0.934 | 0.213 | 0.570 | 4e-62 | |
| 116309112 | 838 | OSIGBa0157N01.3 [Oryza sativa Indica Gro | 0.939 | 0.223 | 0.531 | 2e-54 | |
| 125547684 | 863 | hypothetical protein OsI_15301 [Oryza sa | 0.939 | 0.216 | 0.526 | 5e-54 | |
| 116308953 | 864 | H0215E01.7 [Oryza sativa Indica Group] | 0.939 | 0.216 | 0.521 | 1e-53 | |
| 357160794 | 846 | PREDICTED: G-type lectin S-receptor-like | 0.939 | 0.221 | 0.546 | 3e-53 | |
| 70663992 | 864 | OSJNBb0018A10.15 [Oryza sativa Japonica | 0.939 | 0.216 | 0.517 | 3e-53 | |
| 38344588 | 838 | OSJNBa0079M09.4 [Oryza sativa Japonica G | 0.939 | 0.223 | 0.526 | 1e-51 |
| >gi|255569833|ref|XP_002525880.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223534794|gb|EEF36484.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 300 bits (767), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 145/204 (71%), Positives = 161/204 (78%), Gaps = 13/204 (6%)
Query: 6 NCQSFDYPTAKLSTKWVNSPSAPHSVAFTDGSTVRAILLRGTFGPRYACGFFCNGACDTY 65
N ++FDYP+A LST W NSPS PHS+ FTDGSTVRAILLRGTFGPR+ACGFFCNG CD+Y
Sbjct: 25 NAETFDYPSANLSTSWRNSPSLPHSIEFTDGSTVRAILLRGTFGPRFACGFFCNGTCDSY 84
Query: 66 LFAVFIVQTNSASSIVAPAIGFPQVVWAANRNNPVRINATLELTS-------------PW 112
LFA+FIVQTNSAS I +PAIGFPQVVW+ANRNNPVRINATL+ TS W
Sbjct: 85 LFAIFIVQTNSASYITSPAIGFPQVVWSANRNNPVRINATLQFTSGGDLILKDVDGTIAW 144
Query: 113 STNTNGKSVVGLTLTDTGNLVLFNKKNAAVWQSFDHPTDSLVPGQKLVEGKKLTASVSTT 172
STNT KSV GL LTD GNLVLF+ K+ VWQSFDHPTDSLVPGQKLV GKKL SVS T
Sbjct: 145 STNTADKSVAGLNLTDMGNLVLFDDKDRVVWQSFDHPTDSLVPGQKLVSGKKLIPSVSAT 204
Query: 173 NWKDGGLFSLSVTKKGLFASIESN 196
NW L +SVT +G+FAS+ESN
Sbjct: 205 NWTQLSLLLISVTDEGMFASVESN 228
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|338190111|gb|AEI84329.1| lectin-domain receptor-like kinase [Nicotiana attenuata] | Back alignment and taxonomy information |
|---|
| >gi|255569831|ref|XP_002525879.1| S-locus-specific glycoprotein precursor, putative [Ricinus communis] gi|223534793|gb|EEF36483.1| S-locus-specific glycoprotein precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|255569825|ref|XP_002525876.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223534790|gb|EEF36480.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|116309112|emb|CAH66217.1| OSIGBa0157N01.3 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
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| >gi|125547684|gb|EAY93506.1| hypothetical protein OsI_15301 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
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| >gi|116308953|emb|CAH66079.1| H0215E01.7 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
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| >gi|357160794|ref|XP_003578878.1| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5-like isoform 1 [Brachypodium distachyon] gi|357160797|ref|XP_003578879.1| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5-like isoform 2 [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
| >gi|70663992|emb|CAE04686.2| OSJNBb0018A10.15 [Oryza sativa Japonica Group] gi|125589793|gb|EAZ30143.1| hypothetical protein OsJ_14197 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
| >gi|38344588|emb|CAE05335.2| OSJNBa0079M09.4 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 199 | ||||||
| TAIR|locus:2037548 | 455 | AT1G78830 [Arabidopsis thalian | 0.542 | 0.237 | 0.435 | 7.9e-18 | |
| TAIR|locus:2037563 | 455 | AT1G78820 [Arabidopsis thalian | 0.572 | 0.250 | 0.415 | 4.6e-17 | |
| TAIR|locus:2037568 | 443 | AT1G78860 [Arabidopsis thalian | 0.547 | 0.246 | 0.365 | 1.1e-13 | |
| TAIR|locus:2037508 | 441 | AT1G78850 [Arabidopsis thalian | 0.547 | 0.247 | 0.357 | 2.2e-13 | |
| UNIPROTKB|Q39688 | 389 | EP1 "Epidermis-specific secret | 0.542 | 0.277 | 0.387 | 5.8e-13 | |
| TAIR|locus:2116525 | 821 | SD2-5 "S-domain-2 5" [Arabidop | 0.517 | 0.125 | 0.333 | 1.4e-12 | |
| TAIR|locus:2182603 | 872 | AT5G35370 [Arabidopsis thalian | 0.773 | 0.176 | 0.311 | 1.9e-12 | |
| TAIR|locus:4010713447 | 423 | AT1G16905 [Arabidopsis thalian | 0.412 | 0.193 | 0.422 | 6.5e-11 | |
| TAIR|locus:2026155 | 829 | AT1G34300 [Arabidopsis thalian | 0.653 | 0.156 | 0.293 | 1.1e-07 | |
| TAIR|locus:2018546 | 843 | RK1 "receptor kinase 1" [Arabi | 0.427 | 0.100 | 0.376 | 1.9e-07 |
| TAIR|locus:2037548 AT1G78830 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 223 (83.6 bits), Expect = 7.9e-18, P = 7.9e-18
Identities = 54/124 (43%), Positives = 66/124 (53%)
Query: 91 VWAANRNNPVRINATLELTS-------------PWSTNTNGKSVVGLTLTDTGNLVLFNK 137
+W ANRNNPV NATL L W TNT K V G + GN+VL +K
Sbjct: 94 IWDANRNNPVGENATLSLGRNGNLVLAEADGRVKWQTNTANKGVTGFQILPNGNIVLHDK 153
Query: 138 KNAAVWQSFDHPTDSLVPGQKL-VEG-KKLTASVSTTNWKDGGLFSLSVTKKGLFASIES 195
VWQSFDHPTD+L+ GQ L V G KL + S +N DG +S+ + KKGL +
Sbjct: 154 NGKFVWQSFDHPTDTLLTGQSLKVNGVNKLVSRTSDSNGSDGP-YSMVLDKKGLTMYVNK 212
Query: 196 NNTP 199
TP
Sbjct: 213 TGTP 216
|
|
| TAIR|locus:2037563 AT1G78820 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2037568 AT1G78860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2037508 AT1G78850 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q39688 EP1 "Epidermis-specific secreted glycoprotein EP1" [Daucus carota (taxid:4039)] | Back alignment and assigned GO terms |
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| TAIR|locus:2116525 SD2-5 "S-domain-2 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2182603 AT5G35370 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:4010713447 AT1G16905 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2026155 AT1G34300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2018546 RK1 "receptor kinase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| OsI_15301 | Os04g0303500 (863 aa) | |||||||
(Oryza sativa Indica) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 199 | |||
| pfam01453 | 109 | pfam01453, B_lectin, D-mannose binding lectin | 5e-18 | |
| cd00028 | 116 | cd00028, B_lectin, Bulb-type mannose-specific lect | 3e-14 | |
| smart00108 | 114 | smart00108, B_lectin, Bulb-type mannose-specific l | 1e-13 |
| >gnl|CDD|216511 pfam01453, B_lectin, D-mannose binding lectin | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 5e-18
Identities = 40/85 (47%), Positives = 49/85 (57%), Gaps = 15/85 (17%)
Query: 90 VVWAANRNNPVRI-NATLELTSP-------------WSTNTNGK-SVVGLTLTDTGNLVL 134
VVW ANR NP+ + TL L S WS+NT+GK S L D GNLVL
Sbjct: 4 VVWVANRLNPLTDSSYTLILQSDGNLVLYDGNGRVVWSSNTSGKGSGCVAVLQDDGNLVL 63
Query: 135 FNKKNAAVWQSFDHPTDSLVPGQKL 159
++ +WQSFDHPTD+L+PGQK
Sbjct: 64 YDNSGKVLWQSFDHPTDTLLPGQKD 88
|
These proteins include mannose-specific lectins from plants as well as bacteriocins from bacteria. Length = 109 |
| >gnl|CDD|237995 cd00028, B_lectin, Bulb-type mannose-specific lectin | Back alignment and domain information |
|---|
| >gnl|CDD|214519 smart00108, B_lectin, Bulb-type mannose-specific lectin | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 199 | |||
| PF01453 | 114 | B_lectin: D-mannose binding lectin; InterPro: IPR0 | 99.88 | |
| cd00028 | 116 | B_lectin Bulb-type mannose-specific lectin. The do | 99.84 | |
| smart00108 | 114 | B_lectin Bulb-type mannose-specific lectin. | 99.81 | |
| cd00028 | 116 | B_lectin Bulb-type mannose-specific lectin. The do | 97.76 | |
| smart00108 | 114 | B_lectin Bulb-type mannose-specific lectin. | 97.64 | |
| PF01453 | 114 | B_lectin: D-mannose binding lectin; InterPro: IPR0 | 95.86 |
| >PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.6e-24 Score=162.98 Aligned_cols=88 Identities=51% Similarity=0.799 Sum_probs=60.0
Q ss_pred CcEEEEecCCCcccc---Cceeeeee-------------eeec-CCCCCc--eeEEEEccCCCeEEeecCCceEEeccCC
Q 048079 88 PQVVWAANRNNPVRI---NATLELTS-------------PWST-NTNGKS--VVGLTLTDTGNLVLFNKKNAAVWQSFDH 148 (199)
Q Consensus 88 ~tvVW~ANr~~Pv~~---~s~L~lt~-------------vWst-~~~~~~--~~~~~LldsGNLVL~~~~~~vlWQSFd~ 148 (199)
++|||+|||+.|+.. .++|.|+. +|++ ++.+.+ ...|+|+|+|||||++..+.+|||||||
T Consensus 2 ~tvvW~an~~~p~~~~s~~~~L~l~~dGnLvl~~~~~~~iWss~~t~~~~~~~~~~~L~~~GNlvl~d~~~~~lW~Sf~~ 81 (114)
T PF01453_consen 2 RTVVWVANRNSPLTSSSGNYTLILQSDGNLVLYDSNGSVIWSSNNTSGRGNSGCYLVLQDDGNLVLYDSSGNVLWQSFDY 81 (114)
T ss_dssp --------TTEEEEECETTEEEEEETTSEEEEEETTTEEEEE--S-TTSS-SSEEEEEETTSEEEEEETTSEEEEESTTS
T ss_pred cccccccccccccccccccccceECCCCeEEEEcCCCCEEEEecccCCccccCeEEEEeCCCCEEEEeecceEEEeecCC
Confidence 689999999999943 36676664 8999 556544 7789999999999999888999999999
Q ss_pred CcCcccCCccccCC------CEEEEeeCCCCCC
Q 048079 149 PTDSLVPGQKLVEG------KKLTASVSTTNWK 175 (199)
Q Consensus 149 PTDTlLPGq~L~~~------~~L~S~~s~~d~s 175 (199)
|+||+||+|+|+.+ ..|++|++.+||+
T Consensus 82 ptdt~L~~q~l~~~~~~~~~~~~~sw~s~~dps 114 (114)
T PF01453_consen 82 PTDTLLPGQKLGDGNVTGKNDSLTSWSSNTDPS 114 (114)
T ss_dssp SS-EEEEEET--TSEEEEESTSSEEEESS----
T ss_pred CccEEEeccCcccCCCccccceEEeECCCCCCC
Confidence 99999999999873 2489999998875
|
Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B .... |
| >cd00028 B_lectin Bulb-type mannose-specific lectin | Back alignment and domain information |
|---|
| >smart00108 B_lectin Bulb-type mannose-specific lectin | Back alignment and domain information |
|---|
| >cd00028 B_lectin Bulb-type mannose-specific lectin | Back alignment and domain information |
|---|
| >smart00108 B_lectin Bulb-type mannose-specific lectin | Back alignment and domain information |
|---|
| >PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 199 | |||
| 1kj1_A | 109 | Lectin I, lecgna 1; BULB lectin, mannose, plant pr | 4e-06 | |
| 1b2p_A | 119 | Protein (lectin); mannose-binding lectin, monocot, | 2e-05 | |
| 3m7h_A | 276 | Putidacin L1; monocot mannose-binding lectin, bact | 3e-05 | |
| 3m7h_A | 276 | Putidacin L1; monocot mannose-binding lectin, bact | 7e-04 | |
| 3r0e_B | 110 | Lectin; carbohydrate binding, carbohydrate, sugar | 4e-05 | |
| 3a0c_A | 110 | Mannose/sialic acid-binding lectin; beta-prism II, | 5e-05 | |
| 3a0c_A | 110 | Mannose/sialic acid-binding lectin; beta-prism II, | 3e-04 | |
| 3r0e_A | 109 | Lectin; carbohydrate binding, carbohydrate, sugar | 6e-05 | |
| 1xd5_A | 112 | Gastrodianin-1, antifungal protein GAFP-1; monocot | 2e-04 | |
| 3mez_B | 113 | Mannose-specific lectin 3 chain 2; heterotetramer, | 2e-04 | |
| 1dlp_A | 236 | Lectin scafet precursor; two-domain lectin, beta p | 3e-04 | |
| 1dlp_A | 236 | Lectin scafet precursor; two-domain lectin, beta p | 6e-04 | |
| 3dzw_A | 109 | Agglutinin; lectin, mannobiose, mannose-alpha1, 3- | 6e-04 | |
| 2dpf_A | 115 | Curculin; sweet taste, taste modifying, plant prot | 9e-04 |
| >1kj1_A Lectin I, lecgna 1; BULB lectin, mannose, plant protein; HET: MAN; 2.20A {Allium sativum} SCOP: b.78.1.1 PDB: 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D* Length = 109 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 4e-06
Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 17/74 (22%)
Query: 89 QVVWAANRNNPVRINATLELTS-------------PWSTNTNGKS-VVGLTLTDTGNLVL 134
VWA+N + L S W++++ + L L + GN+V+
Sbjct: 38 TSVWASNTGILGKKGCKAVLQSDGNFVVYDAEGRSLWASHSVRGNGNYVLVLQEDGNVVI 97
Query: 135 FNKKNAAVWQSFDH 148
+ + +W + +
Sbjct: 98 Y---GSDIWSTGTY 108
|
| >1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1 Length = 119 | Back alignment and structure |
|---|
| >3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A* Length = 276 | Back alignment and structure |
|---|
| >3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A* Length = 276 | Back alignment and structure |
|---|
| >3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Length = 110 | Back alignment and structure |
|---|
| >3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A* Length = 110 | Back alignment and structure |
|---|
| >3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A* Length = 110 | Back alignment and structure |
|---|
| >3r0e_A Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Length = 109 | Back alignment and structure |
|---|
| >1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A Length = 112 | Back alignment and structure |
|---|
| >3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} Length = 113 | Back alignment and structure |
|---|
| >1dlp_A Lectin scafet precursor; two-domain lectin, beta prism II fold, native, sugar binding protein; 3.30A {Hyacinthoides hispanica} SCOP: b.78.1.1 b.78.1.1 Length = 236 | Back alignment and structure |
|---|
| >1dlp_A Lectin scafet precursor; two-domain lectin, beta prism II fold, native, sugar binding protein; 3.30A {Hyacinthoides hispanica} SCOP: b.78.1.1 b.78.1.1 Length = 236 | Back alignment and structure |
|---|
| >3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A* Length = 109 | Back alignment and structure |
|---|
| >2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A* Length = 115 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 199 | |||
| 3m7h_A | 276 | Putidacin L1; monocot mannose-binding lectin, bact | 99.96 | |
| 1dlp_A | 236 | Lectin scafet precursor; two-domain lectin, beta p | 99.89 | |
| 1b2p_A | 119 | Protein (lectin); mannose-binding lectin, monocot, | 99.54 | |
| 2dpf_A | 115 | Curculin; sweet taste, taste modifying, plant prot | 99.41 | |
| 1xd5_A | 112 | Gastrodianin-1, antifungal protein GAFP-1; monocot | 99.36 | |
| 3a0c_A | 110 | Mannose/sialic acid-binding lectin; beta-prism II, | 99.33 | |
| 4h3o_A | 105 | Lectin; cadmium, plant protein; 2.17A {Allium sati | 99.33 | |
| 3dzw_A | 109 | Agglutinin; lectin, mannobiose, mannose-alpha1, 3- | 99.03 | |
| 3mez_B | 113 | Mannose-specific lectin 3 chain 2; heterotetramer, | 98.67 | |
| 3r0e_B | 110 | Lectin; carbohydrate binding, carbohydrate, sugar | 98.59 | |
| 3r0e_A | 109 | Lectin; carbohydrate binding, carbohydrate, sugar | 98.41 | |
| 3m7h_A | 276 | Putidacin L1; monocot mannose-binding lectin, bact | 98.38 | |
| 3mez_A | 111 | Mannose-specific lectin 3 chain 1; heterotetramer, | 98.27 | |
| 3dzw_A | 109 | Agglutinin; lectin, mannobiose, mannose-alpha1, 3- | 98.14 | |
| 3mez_A | 111 | Mannose-specific lectin 3 chain 1; heterotetramer, | 98.1 | |
| 3a0c_A | 110 | Mannose/sialic acid-binding lectin; beta-prism II, | 98.0 | |
| 3mez_B | 113 | Mannose-specific lectin 3 chain 2; heterotetramer, | 97.95 | |
| 3r0e_B | 110 | Lectin; carbohydrate binding, carbohydrate, sugar | 97.93 | |
| 4h3o_A | 105 | Lectin; cadmium, plant protein; 2.17A {Allium sati | 97.84 | |
| 3r0e_A | 109 | Lectin; carbohydrate binding, carbohydrate, sugar | 97.81 | |
| 1dlp_A | 236 | Lectin scafet precursor; two-domain lectin, beta p | 97.78 | |
| 1xd5_A | 112 | Gastrodianin-1, antifungal protein GAFP-1; monocot | 97.77 | |
| 2dpf_A | 115 | Curculin; sweet taste, taste modifying, plant prot | 97.65 | |
| 1b2p_A | 119 | Protein (lectin); mannose-binding lectin, monocot, | 96.7 |
| >3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-29 Score=217.12 Aligned_cols=133 Identities=25% Similarity=0.390 Sum_probs=107.9
Q ss_pred CCCCCccccCCCceEEEeeeeCCCCCeEEeeeecCCCCCceEEEEEEEeccCCCccccCCCCCCcEEEEecCCCcccc--
Q 048079 25 PSAPHSVAFTDGSTVRAILLRGTFGPRYACGFFCNGACDTYLFAVFIVQTNSASSIVAPAIGFPQVVWAANRNNPVRI-- 102 (199)
Q Consensus 25 ~s~~~~~~~~dg~~~~~~l~~~S~~g~F~lGFf~~~~~~~~~lgIw~~~~n~~~~~~~~~~~~~tvVW~ANr~~Pv~~-- 102 (199)
++|..+..+.+|++++ |++|.|+||||.. + +.|+ |. +.+ +||+|||+.||.+
T Consensus 15 ~~l~~g~~l~~~~~l~------S~~g~F~lgf~~~--~-~~~l---y~-------------~~~-vvW~Anr~~p~~~~~ 68 (276)
T 3m7h_A 15 SVLPAYQTLSAGQYLL------SPNQRFKLLLQGD--G-NLVI---QD-------------NGA-TVWVANEQQPFSSTI 68 (276)
T ss_dssp SEECTTEEBCTTCEEE------CTTSSEEEEECTT--S-CEEE---EE-------------TTE-EEEECSTTSTTEEEE
T ss_pred CEecCCCEecCCCEEE------cCCCcEEEEEECC--C-CeEE---EC-------------CCC-eEEECCCCCCcCCcc
Confidence 5677888888898888 8999999999943 3 4444 43 245 9999999999866
Q ss_pred ---Cceeeeee---------------eeecCCCC------CceeEEEEccCCCeEEeecCCceEEeccCCCcCcccCCcc
Q 048079 103 ---NATLELTS---------------PWSTNTNG------KSVVGLTLTDTGNLVLFNKKNAAVWQSFDHPTDSLVPGQK 158 (199)
Q Consensus 103 ---~s~L~lt~---------------vWst~~~~------~~~~~~~LldsGNLVL~~~~~~vlWQSFd~PTDTlLPGq~ 158 (199)
.++|+|+. ||++++.. ..+..|+|+|+|||||++ +.+|||| |||||+||||+
T Consensus 69 ~~~~~~l~l~~~G~Lvl~~~~~~~~~vWst~~~~~~~~~~~~~~~a~L~d~GNlVl~~--~~~lWqS--~ptdtlLpg~~ 144 (276)
T 3m7h_A 69 PLRNKKAPLAFYVQYGAFLDDYSRRRVWLTDNSTFTSNDQWNRTHLVLQDDGNIVLVD--SLALWNG--TPAIPLVPGAI 144 (276)
T ss_dssp ECCCTTCCSEEEESSSEEEEEGGGTEEEEECCCCCCCTTHHHHEEEEECTTSCEEEEE--EEEEEES--CTTSCCCCSCT
T ss_pred cccceEEEEeCCCcEEEEEeCCCCCEEEEeCCCcccccccCCceEEEEeCCCCEEecC--CceeeCc--ccccccccccc
Confidence 44444432 89999865 345789999999999998 7799999 99999999999
Q ss_pred ----ccCCCEEEEeeCCCCCCCceeEEEEEeCCCceE
Q 048079 159 ----LVEGKKLTASVSTTNWKDGGLFSLSVTKKGLFA 191 (199)
Q Consensus 159 ----L~~~~~L~S~~s~~d~s~~G~fsl~l~~~g~~~ 191 (199)
|..|++| ++..|+++ |.|+++|+++|...
T Consensus 145 ~~~~l~~g~~L---~S~~dps~-G~fsl~l~~dGnlv 177 (276)
T 3m7h_A 145 DSLLLAPGSEL---VQGVVYGA-GASKLVFQGDGNLV 177 (276)
T ss_dssp TCEEECSSEEE---CTTCEEEE-TTEEEEECTTSCEE
T ss_pred cccccccCccc---ccCCCCCC-ceEEEeecCCceEE
Confidence 7788888 55678998 99999999998543
|
| >1dlp_A Lectin scafet precursor; two-domain lectin, beta prism II fold, native, sugar binding protein; 3.30A {Hyacinthoides hispanica} SCOP: b.78.1.1 b.78.1.1 | Back alignment and structure |
|---|
| >1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1 | Back alignment and structure |
|---|
| >2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A* | Back alignment and structure |
|---|
| >1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A | Back alignment and structure |
|---|
| >3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A* | Back alignment and structure |
|---|
| >4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D* | Back alignment and structure |
|---|
| >3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A* | Back alignment and structure |
|---|
| >3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 | Back alignment and structure |
|---|
| >3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} | Back alignment and structure |
|---|
| >3r0e_A Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} | Back alignment and structure |
|---|
| >3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A* | Back alignment and structure |
|---|
| >3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 | Back alignment and structure |
|---|
| >3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A* | Back alignment and structure |
|---|
| >3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 | Back alignment and structure |
|---|
| >3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A* | Back alignment and structure |
|---|
| >3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 | Back alignment and structure |
|---|
| >3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} | Back alignment and structure |
|---|
| >4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D* | Back alignment and structure |
|---|
| >3r0e_A Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} | Back alignment and structure |
|---|
| >1dlp_A Lectin scafet precursor; two-domain lectin, beta prism II fold, native, sugar binding protein; 3.30A {Hyacinthoides hispanica} SCOP: b.78.1.1 b.78.1.1 | Back alignment and structure |
|---|
| >1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A | Back alignment and structure |
|---|
| >2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A* | Back alignment and structure |
|---|
| >1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 199 | ||||
| d1kj1a_ | 109 | b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium | 2e-08 | |
| d1xd5a_ | 112 | b.78.1.1 (A:) Gastrodianin (antifungal protein) {G | 5e-06 | |
| d1dlpa2 | 120 | b.78.1.1 (A:116-235) Fetuin-binding protein Scafet | 9e-06 | |
| d1dlpa1 | 115 | b.78.1.1 (A:1-115) Fetuin-binding protein Scafet p | 2e-05 | |
| d1jpca_ | 108 | b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galan | 1e-04 | |
| d1b2pa_ | 119 | b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scill | 0.003 |
| >d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: beta-Prism II superfamily: alpha-D-mannose-specific plant lectins family: alpha-D-mannose-specific plant lectins domain: Lectin (agglutinin) species: Garlic (Allium sativum) [TaxId: 4682]
Score = 48.0 bits (114), Expect = 2e-08
Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 17/73 (23%)
Query: 90 VVWAANRNNPVRINATLELTS-------------PWSTNTN-GKSVVGLTLTDTGNLVLF 135
VWA+N + L S W++++ G L L + GN+V++
Sbjct: 39 SVWASNTGILGKKGCKAVLQSDGNFVVYDAEGRSLWASHSVRGNGNYVLVLQEDGNVVIY 98
Query: 136 NKKNAAVWQSFDH 148
+ +W + +
Sbjct: 99 ---GSDIWSTGTY 108
|
| >d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]} Length = 112 | Back information, alignment and structure |
|---|
| >d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 120 | Back information, alignment and structure |
|---|
| >d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 115 | Back information, alignment and structure |
|---|
| >d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]} Length = 108 | Back information, alignment and structure |
|---|
| >d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 119 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 199 | |||
| d1xd5a_ | 112 | Gastrodianin (antifungal protein) {Gastrodia elata | 99.45 | |
| d1kj1a_ | 109 | Lectin (agglutinin) {Garlic (Allium sativum) [TaxI | 99.32 | |
| d1jpca_ | 108 | Lectin (agglutinin) {Snowdrop (Galanthus nivalis) | 99.28 | |
| d1dlpa2 | 120 | Fetuin-binding protein Scafet precursor {Bluebell | 99.2 | |
| d1dlpa1 | 115 | Fetuin-binding protein Scafet precursor {Bluebell | 98.89 | |
| d1b2pa_ | 119 | Lectin (agglutinin) {Bluebell (Scilla campanulata) | 98.61 | |
| d1dlpa1 | 115 | Fetuin-binding protein Scafet precursor {Bluebell | 98.01 | |
| d1kj1a_ | 109 | Lectin (agglutinin) {Garlic (Allium sativum) [TaxI | 97.89 | |
| d1jpca_ | 108 | Lectin (agglutinin) {Snowdrop (Galanthus nivalis) | 97.84 | |
| d1b2pa_ | 119 | Lectin (agglutinin) {Bluebell (Scilla campanulata) | 97.77 | |
| d1xd5a_ | 112 | Gastrodianin (antifungal protein) {Gastrodia elata | 97.08 | |
| d1dlpa2 | 120 | Fetuin-binding protein Scafet precursor {Bluebell | 97.05 |
| >d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: beta-Prism II superfamily: alpha-D-mannose-specific plant lectins family: alpha-D-mannose-specific plant lectins domain: Gastrodianin (antifungal protein) species: Gastrodia elata [TaxId: 91201]
Probab=99.45 E-value=2e-13 Score=101.37 Aligned_cols=99 Identities=19% Similarity=0.359 Sum_probs=74.0
Q ss_pred CCCCCccccCCCceEEEeeeeCCCCCeEEeeeecCCCCCceEEEEEEEeccCCCccccCCCCCCcEEEEecCCCcccc--
Q 048079 25 PSAPHSVAFTDGSTVRAILLRGTFGPRYACGFFCNGACDTYLFAVFIVQTNSASSIVAPAIGFPQVVWAANRNNPVRI-- 102 (199)
Q Consensus 25 ~s~~~~~~~~dg~~~~~~l~~~S~~g~F~lGFf~~~~~~~~~lgIw~~~~n~~~~~~~~~~~~~tvVW~ANr~~Pv~~-- 102 (199)
+.|..++.+..|..+. +|.|+|.|+..++ |.++ . ..++||.|+++.+...
T Consensus 2 DtL~~gq~L~~g~~l~--------~g~~~l~~q~DGN-----Lvly--~-------------~~~~vW~s~~~~~~~~~~ 53 (112)
T d1xd5a_ 2 DRLNSGHQLDTGGSLA--------EGGYLFIIQNDCN-----LVLY--D-------------NNRAVWASGTNGKASGCV 53 (112)
T ss_dssp CEEETTEEECTTCEEE--------ETTEEEEECTTSC-----EEEE--E-------------TTEEEEECCCTTSCSSEE
T ss_pred CEecCCCEecCCCEEE--------ECCEEEEEcCCCC-----EEEE--c-------------CCcEEEEccCccCCCCcE
Confidence 4567788888999876 6999999987653 2333 1 2579999999876432
Q ss_pred -----Cceeeeee----eeecCCCCC-ceeEEEEccCCCeEEeecCCceEEeccCCCcC
Q 048079 103 -----NATLELTS----PWSTNTNGK-SVVGLTLTDTGNLVLFNKKNAAVWQSFDHPTD 151 (199)
Q Consensus 103 -----~s~L~lt~----vWst~~~~~-~~~~~~LldsGNLVL~~~~~~vlWQSFd~PTD 151 (199)
.+.|.|.. +|++++... +...++|+|+|||||++.++.++|||+.+|+|
T Consensus 54 l~l~~dGnLvl~~~~~~~w~s~t~~~~~~~~l~L~ddGNlvly~~~~~~~W~S~t~~~n 112 (112)
T d1xd5a_ 54 LKMQNDGNLVIYSGSRAIWASNTNRQNGNYYLILQRDRNVVIYDNSNNAIWATHTNVGN 112 (112)
T ss_dssp EEECTTSCEEEEETTEEEEECCCCCSCCCCEEEECTTSCEEEECTTSCEEEECCCCCCC
T ss_pred EEEeccccEEEEecCCeEEEEeeccCCCceEEEEcCCCCEEEECCCCcEEecCCCccCC
Confidence 13344433 888776543 45678999999999999988999999999986
|
| >d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
| >d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]} | Back information, alignment and structure |
|---|
| >d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} | Back information, alignment and structure |
|---|
| >d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} | Back information, alignment and structure |
|---|
| >d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla campanulata) [TaxId: 81759]} | Back information, alignment and structure |
|---|
| >d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} | Back information, alignment and structure |
|---|
| >d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
| >d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]} | Back information, alignment and structure |
|---|
| >d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla campanulata) [TaxId: 81759]} | Back information, alignment and structure |
|---|
| >d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]} | Back information, alignment and structure |
|---|
| >d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} | Back information, alignment and structure |
|---|