Citrus Sinensis ID: 048100

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-
Protein Sequence
MNSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSANGS
Secondary Structure (PSIPRED)
ccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccccccccccHHHHHHHHHHccccHHHcccccccHHHHHHHHHccHHHHHHHHHHHHcccccHHHHcHHHHHHHHHHccccccccHHHHHHHcccHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHccccHHHHHHHHccccccccccccccEEEHHHHHHccccccccHHHHHHHHHHHHHccHHHHccccccccHHHHHHHHcHHHHHHHHHHHHHccccHHHHcccccHHHHHHHHcccccccHHHHHHHcccHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
MNSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYtqnkegesvSTKFVELVLETCPSLLLqvnakgdsplhVAARYGHAAVVGALIEFaekqpgqelesgvKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLgadpafpysangs
Flexible Loop (DISEMBL)
MNSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASytqnkegesVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFaekqpgqelesgvkSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGAdpafpysangs
Low Complexity Region (SEG)
MNSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSANGS
Disordered region (IsUnstruct)
*******AAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFA**************************************SLDVVEILLGAD**********
Disordered Region (DISOPRED)
MNSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSA***
Disordered Region (DISEMBL)
MNSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSANGS
Disordered Region (DISPRO)
*NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPY*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSANGS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	161	2.2.26 [Sep-21-2011]
Q92625	1134	Ankyrin repeat and SAM do	yes	no	0.459	0.065	0.387	2e-06
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.484	0.146	0.361	2e-05
P59672	1150	Ankyrin repeat and SAM do	yes	no	0.459	0.064	0.376	2e-05
Q7Z6G8	1248	Ankyrin repeat and steril	no	no	0.447	0.057	0.340	3e-05
P0C6S7	1260	Ankyrin repeat and steril	no	no	0.447	0.057	0.340	3e-05
Q8BIZ1	1259	Ankyrin repeat and steril	no	no	0.447	0.057	0.340	3e-05
Q9HFE7	146	Ankyrin repeat-containing	yes	no	0.521	0.575	0.267	0.0001
A5PMU4	1280	Ankyrin repeat and steril	yes	no	0.447	0.056	0.340	0.0002
P57044	451	Integrin-linked protein k	no	no	0.515	0.184	0.330	0.0002
Q3SWY2	452	Integrin-linked protein k	no	no	0.515	0.183	0.330	0.0002

>sp|Q92625|ANS1A_HUMAN Ankyrin repeat and SAM domain-containing protein 1A OS=Homo sapiens GN=ANKS1A PE=1 SV=4

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 19/93 (20%)

Query: 58  KFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTT 117
           + V+++L   P+LL   N K  +PLH+AAR GH AVV  L           L++G+ S  
Sbjct: 196 EVVKMLLNAHPNLL-SCNTKKHTPLHLAARNGHKAVVQVL-----------LDAGMDSNY 243

Query: 118 RYMLGMKNDEEDTALHEAVQSGSLDVVEILLGA 150
           +  +G       +ALHEA   G  DVV+ILL A
Sbjct: 244 QTEMG-------SALHEAALFGKTDVVQILLAA 269

Regulator of different signaling pathways. Regulates EPHA8 receptor tyrosine kinase signaling to control cell migration and neurite retraction.
Homo sapiens (taxid: 9606)

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 16/94 (17%)

Query: 58  KFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTT 117
           + V  +L+  PS  + V   G + LH A RYG   +V ALI   EK              
Sbjct: 142 EIVNAMLDVDPSCAMIVRKNGKTSLHTAGRYGLLRIVKALI---EKDAA----------- 187

Query: 118 RYMLGMKNDEEDTALHEAVQSGSLDVVEILLGAD 151
             ++G+K+ +  TALH AV+  SL+VVE +L AD
Sbjct: 188 --IVGVKDKKGQTALHMAVKGRSLEVVEEILQAD 219

Arabidopsis thaliana (taxid: 3702)

>sp|P59672|ANS1A_MOUSE Ankyrin repeat and SAM domain-containing protein 1A OS=Mus musculus GN=Anks1a PE=1 SV=3

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 19/93 (20%)

Query: 58  KFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTT 117
           + V+L+L   P+LL   + +  +PLH+AAR GH AVV  L           L++G+ S  
Sbjct: 213 EVVKLLLGAHPNLL-SCSTRKHTPLHLAARNGHKAVVQVL-----------LDAGMDSNY 260

Query: 118 RYMLGMKNDEEDTALHEAVQSGSLDVVEILLGA 150
           +  +G       +ALHEA   G  DVV+ILL A
Sbjct: 261 QTEMG-------SALHEAALFGKTDVVQILLAA 286

Regulator of different signaling pathways. Regulates EPHA8 receptor tyrosine kinase signaling to control cell migration and neurite retraction.

Mus musculus (taxid: 10090)

>sp|Q7Z6G8|ANS1B_HUMAN Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Homo sapiens GN=ANKS1B PE=1 SV=2

 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 19/91 (20%)

Query: 58  KFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTT 117
           + V++++   P+L+   N +  +PLH+AAR GH AVV  L           LE+G+  + 
Sbjct: 175 RVVKMIISAHPNLM-SCNTRKHTPLHLAARNGHKAVVQVL-----------LEAGMDVSC 222

Query: 118 RYMLGMKNDEEDTALHEAVQSGSLDVVEILL 148
           +        E+ +ALHEA   G +DVV +LL
Sbjct: 223 Q-------TEKGSALHEAALFGKVDVVRVLL 246

Isoform 4 may play a role as a modulator of APP processing. Overexpression can down-regulate APP processing.

Homo sapiens (taxid: 9606)

>sp|P0C6S7|ANS1B_RAT Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Rattus norvegicus GN=Anks1b PE=1 SV=1

 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 19/91 (20%)

Query: 58  KFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTT 117
           + V++++   P+L+   N +  +PLH+AAR GH AVV  L           LE+G+  + 
Sbjct: 175 RVVKMIISAHPNLM-SCNTRKHTPLHLAARNGHKAVVQVL-----------LEAGMDVSC 222

Query: 118 RYMLGMKNDEEDTALHEAVQSGSLDVVEILL 148
           +        E+ +ALHEA   G +DVV +LL
Sbjct: 223 QT-------EKGSALHEAALFGKVDVVRVLL 246

Isoform 3 can regulate global protein synthesis by altering nucleolar numbers.

Rattus norvegicus (taxid: 10116)

>sp|Q8BIZ1|ANS1B_MOUSE Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Mus musculus GN=Anks1b PE=1 SV=3

 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 19/91 (20%)

Query: 58  KFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTT 117
           + V++++   P+L+   N +  +PLH+AAR GH AVV  L           LE+G+  + 
Sbjct: 175 RVVKMIISAHPNLM-SCNTRKHTPLHLAARNGHKAVVQVL-----------LEAGMDVSC 222

Query: 118 RYMLGMKNDEEDTALHEAVQSGSLDVVEILL 148
           +        E+ +ALHEA   G +DVV +LL
Sbjct: 223 QT-------EKGSALHEAALFGKVDVVRVLL 246

Isoform 2 may participate in the regulation of nucleoplasmic coilin protein interactions in neuronal and transformed cells.

Mus musculus (taxid: 10090)

>sp|Q9HFE7|YNW5_SCHPO Ankyrin repeat-containing protein P16F5.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBP16F5.05c PE=4 SV=1

 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 17/101 (16%)

Query: 54  SVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGV 113
           +   + ++ ++E CP  L + +  G+S LH+A+  GH AVV  +I +  K+         
Sbjct: 12  AADEELLDEIIEKCPQELSRRDENGNSGLHMASANGHIAVVQKIIPYLNKE--------- 62

Query: 114 KSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILL--GADP 152
                 ++  +N+  +TA+H A  +G  ++ ++LL  G DP
Sbjct: 63  ------VINAQNESGNTAMHWAALNGHAEICKLLLEAGGDP 97

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|A5PMU4|ANS1B_DANRE Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Danio rerio GN=anks1b PE=3 SV=1

 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 19/91 (20%)

Query: 58  KFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTT 117
           + V ++L   P+L+   N +  +PLH+AAR GH A V  L+         E +  V + T
Sbjct: 174 QVVRMLLTAHPNLM-SCNTRKHTPLHLAARNGHYATVQVLL---------EADMDVNTQT 223

Query: 118 RYMLGMKNDEEDTALHEAVQSGSLDVVEILL 148
                    E+ +ALHEA   G +DVV++LL
Sbjct: 224 ---------EKGSALHEAALFGKMDVVQLLL 245

Danio rerio (taxid: 7955)

>sp|P57044|ILK_CAVPO Integrin-linked protein kinase OS=Cavia porcellus GN=ILK PE=2 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 20/103 (19%)

Query: 46  YTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQP 105
           +TQ +EG +V+   V L L+   + L Q +  G SPLH A R G +AVV  LI    +  
Sbjct: 5   FTQCREGNAVA---VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-- 59

Query: 106 GQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILL 148
                          + + N  +DT LH A   G  D+V+ LL
Sbjct: 60  ---------------INVMNRGDDTPLHLAASHGHRDIVQKLL 87

Receptor-proximal protein kinase regulating integrin-mediated signal transduction. May act as a mediator of inside-out integrin signaling. Focal adhesion protein part of the complex ILK-PINCH. This complex is considered to be one of the convergence points of integrin- and growth factor-signaling pathway. Could be implicated in mediating cell architecture, adhesion to integrin substrates and anchorage-dependent growth in epithelial cells. Phosphorylates beta-1 and beta-3 integrin subunit on serine and threonine residues, but also AKT1 and GSK3B.

Cavia porcellus (taxid: 10141)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q3SWY2|ILK_BOVIN Integrin-linked protein kinase OS=Bos taurus GN=ILK PE=2 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 20/103 (19%)

Query: 46  YTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQP 105
           +TQ +EG +V+   V L L+   + L Q +  G SPLH A R G +AVV  LI    +  
Sbjct: 5   FTQCREGNAVA---VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-- 59

Query: 106 GQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILL 148
                          + + N  +DT LH A   G  D+V+ LL
Sbjct: 60  ---------------INVMNRGDDTPLHLAASHGHRDIVQKLL 87

Receptor-proximal protein kinase regulating integrin-mediated signal transduction. May act as a mediator of inside-out integrin signaling. Focal adhesion protein part of the complex ILK-PINCH. This complex is considered to be one of the convergence points of integrin- and growth factor-signaling pathway. Could be implicated in mediating cell architecture, adhesion to integrin substrates and anchorage-dependent growth in epithelial cells. Phosphorylates beta-1 and beta-3 integrin subunit on serine and threonine residues, but also AKT1 and GSK3B.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
224127093	281	predicted protein [Populus trichocarpa]	0.919	0.526	0.496	2e-28
224157601	254	predicted protein [Populus trichocarpa]	0.931	0.590	0.484	3e-28
224145572	395	predicted protein [Populus trichocarpa]	0.937	0.382	0.465	3e-27
224127104	405	predicted protein [Populus trichocarpa]	0.931	0.370	0.465	3e-27
224127098	399	predicted protein [Populus trichocarpa]	0.931	0.375	0.465	4e-27
224127081	227	predicted protein [Populus trichocarpa]	0.931	0.660	0.465	4e-27
224127089	217	predicted protein [Populus trichocarpa]	0.931	0.691	0.459	5e-27
224127079	394	predicted protein [Populus trichocarpa]	0.931	0.380	0.446	7e-26
224127106	575	predicted protein [Populus trichocarpa]	0.937	0.262	0.446	8e-26
224127096	219	predicted protein [Populus trichocarpa]	0.925	0.680	0.468	2e-25

>gi|224127093|ref|XP_002329392.1| predicted protein [Populus trichocarpa] gi|222870442|gb|EEF07573.1| predicted protein [Populus trichocarpa]

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/161 (49%), Positives = 100/161 (62%), Gaps = 13/161 (8%)

Query: 1   MNSDLYEAAAKGVIEPFN--QLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTK 58
           M+  L++AA  G I PF   Q  +D+    L+   +N++LHV     Y  N+  E   T 
Sbjct: 5   MDPVLFKAAEAGDIGPFENYQTCLDQ----LLTPDENTILHV-----YLGNQSREPEFTD 55

Query: 59  FVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTR 118
           FV+ +LE CP LLLQ N KG+ PLH+AARYGH+ VVG LIE AE  P  + ESGV S  +
Sbjct: 56  FVDKILEMCPPLLLQANKKGEIPLHLAARYGHSNVVGVLIERAEALP-TDPESGV-SEAK 113

Query: 119 YMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN 159
            ML M NDE+DTALHEA ++    VVEIL   DP F YSAN
Sbjct: 114 KMLRMTNDEQDTALHEAARNMRSHVVEILTEEDPEFSYSAN 154

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224157601|ref|XP_002337868.1| predicted protein [Populus trichocarpa] gi|222869936|gb|EEF07067.1| predicted protein [Populus trichocarpa]

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/159 (48%), Positives = 96/159 (60%), Gaps = 9/159 (5%)

Query: 1   MNSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFV 60
           M+  LY+AA +G I+PF        L  L+   +N++L V     Y +N+  E  ST FV
Sbjct: 13  MDPVLYKAAEEGNIDPFENCQT--CLDQLLTPDENTILLV-----YLRNQTTEPKSTDFV 65

Query: 61  ELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYM 120
             +LE CP LL Q N KG++PLH+AARYGHA VV  LIE AE  P  + ES V +  + M
Sbjct: 66  YKILERCPPLLFQANKKGETPLHLAARYGHANVVKLLIERAEALPS-DPESRV-TKAKMM 123

Query: 121 LGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN 159
           L M N E DTALHEA ++    VVEIL   DP FPYSAN
Sbjct: 124 LRMTNGERDTALHEAARNNQSHVVEILTKEDPEFPYSAN 162

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145572|ref|XP_002325691.1| predicted protein [Populus trichocarpa] gi|222862566|gb|EEF00073.1| predicted protein [Populus trichocarpa]

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/159 (46%), Positives = 96/159 (60%), Gaps = 8/159 (5%)

Query: 1   MNSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFV 60
           M   LY+AA  G I PF    +   L  L+  KKN++LHV     Y +N+   S ST FV
Sbjct: 1   MEPKLYKAAEAGNINPFKD-RLPTSLNELLTPKKNTILHV-----YLENQRKGSKSTDFV 54

Query: 61  ELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYM 120
             +++ CP LLLQ N KG+ PLH AARYG + VV  LI+ A+ +P  +LESGV +  + M
Sbjct: 55  GQIIDMCPPLLLQANKKGEIPLHFAARYGRSNVVRVLIDRAKARP-TDLESGV-TEAKKM 112

Query: 121 LGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN 159
           L M N+E+DTALH A ++    VVEIL   DP F YS N
Sbjct: 113 LRMTNEEKDTALHVAARNIQAQVVEILTKEDPEFSYSTN 151

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127104|ref|XP_002329397.1| predicted protein [Populus trichocarpa] gi|222870447|gb|EEF07578.1| predicted protein [Populus trichocarpa]

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/159 (46%), Positives = 98/159 (61%), Gaps = 9/159 (5%)

Query: 1   MNSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFV 60
           M+  L++AAA+G I+PF +      L  L+   +N++LHV     Y  N+  E   T FV
Sbjct: 13  MDPVLFKAAAEGDIDPFEKYQT--CLDQLLTPDENTILHV-----YLGNQSREPELTDFV 65

Query: 61  ELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYM 120
            ++LE CP LL Q N KG+ PLH+AA YGH+ VV  LI+ A+  P  + ESGV +  + M
Sbjct: 66  VIILEMCPPLLFQANKKGEIPLHLAAAYGHSNVVKVLIDRAKALP-TDSESGV-TEAKKM 123

Query: 121 LGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN 159
           L M N+E+DTALHEA +     VVEIL   DP FPYSAN
Sbjct: 124 LRMTNEEQDTALHEAARHRRSHVVEILTKEDPEFPYSAN 162

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127098|ref|XP_002329394.1| predicted protein [Populus trichocarpa] gi|222870444|gb|EEF07575.1| predicted protein [Populus trichocarpa]

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 74/159 (46%), Positives = 98/159 (61%), Gaps = 9/159 (5%)

Query: 1   MNSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFV 60
           M+  L++AAA+G I+PF +      L  L+   +N++LHV     Y  N+  E   T FV
Sbjct: 7   MDPVLFKAAAEGDIDPFEKYQT--CLDQLLTPDENTILHV-----YLGNQSREPELTDFV 59

Query: 61  ELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYM 120
            ++LE CP LL Q N KG+ PLH+AA YGH+ VV  LI+ A+  P  + ESGV +  + M
Sbjct: 60  VIILEMCPPLLFQANKKGEIPLHLAAAYGHSNVVKVLIDRAKALP-TDSESGV-TEAKKM 117

Query: 121 LGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN 159
           L M N+E+DTALHEA +     VVEIL   DP FPYSAN
Sbjct: 118 LRMTNEEQDTALHEAARHRRSHVVEILTKEDPEFPYSAN 156

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127081|ref|XP_002329387.1| predicted protein [Populus trichocarpa] gi|222870437|gb|EEF07568.1| predicted protein [Populus trichocarpa]

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 74/159 (46%), Positives = 98/159 (61%), Gaps = 9/159 (5%)

Query: 1   MNSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFV 60
           M+  L++AAA+G I+PF +      L  L+   +N++LHV     Y  N+  E   T FV
Sbjct: 13  MDPVLFKAAAEGDIDPFEKYQT--CLDQLLTPDENTILHV-----YLGNQSREPELTDFV 65

Query: 61  ELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYM 120
            ++LE CP LL Q N KG+ PLH+AA YGH+ VV  LI+ A+  P  + ESGV +  + M
Sbjct: 66  VIILEMCPPLLFQANKKGEIPLHLAAAYGHSNVVKVLIDRAKALP-TDSESGV-TEAKKM 123

Query: 121 LGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN 159
           L M N+E+DTALHEA +     VVEIL   DP FPYSAN
Sbjct: 124 LRMTNEEQDTALHEAARHRRSHVVEILTKEDPEFPYSAN 162

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127089|ref|XP_002329390.1| predicted protein [Populus trichocarpa] gi|222870440|gb|EEF07571.1| predicted protein [Populus trichocarpa]

 Score =  125 bits (315), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 73/159 (45%), Positives = 98/159 (61%), Gaps = 9/159 (5%)

Query: 1   MNSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFV 60
           M+  L++AA  G I PF       +L  L+   +N++LHV     Y  N+  E  ST FV
Sbjct: 5   MDPLLFKAAEAGNIGPFENYQT--RLNQLLTPDENTILHV-----YLGNQSREPESTDFV 57

Query: 61  ELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYM 120
           +++LE CP LLLQ N KG+ PLH+AARYGH+ VV  LI+ A+  P  + ESG+    + M
Sbjct: 58  DIILEMCPPLLLQANEKGEIPLHLAARYGHSNVVKVLIDCAKALP-TDPESGLTKAQK-M 115

Query: 121 LGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN 159
           L M N+E+DTALHEA ++    +VEIL   DP F YSAN
Sbjct: 116 LRMANEEQDTALHEAARNRRSHLVEILTKEDPEFSYSAN 154

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127079|ref|XP_002329386.1| predicted protein [Populus trichocarpa] gi|224127100|ref|XP_002329395.1| predicted protein [Populus trichocarpa] gi|222870436|gb|EEF07567.1| predicted protein [Populus trichocarpa] gi|222870445|gb|EEF07576.1| predicted protein [Populus trichocarpa]

 Score =  122 bits (305), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 71/159 (44%), Positives = 95/159 (59%), Gaps = 9/159 (5%)

Query: 1   MNSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFV 60
           M+  L++AA  G I PF        L  L+   +N++LHV     Y +N+  E  ST FV
Sbjct: 1   MDPVLFKAAEAGNIGPFENYQT--SLNQLLTADENTILHV-----YLKNQSSEPESTDFV 53

Query: 61  ELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYM 120
           +  LE CP LL Q N +G++PLH+AAR GH+ VV  LI+ A+  P  + ESGV +  + M
Sbjct: 54  DKFLERCPPLLFQANKRGETPLHLAARNGHSNVVKVLIDRAKALPA-DPESGV-TKAKMM 111

Query: 121 LGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN 159
           L M N+E+DTALHEA ++    VVEIL   DP F Y AN
Sbjct: 112 LRMTNEEQDTALHEAARNRRSHVVEILTKEDPEFSYPAN 150

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127106|ref|XP_002329398.1| predicted protein [Populus trichocarpa] gi|222870448|gb|EEF07579.1| predicted protein [Populus trichocarpa]

 Score =  121 bits (304), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 71/159 (44%), Positives = 94/159 (59%), Gaps = 8/159 (5%)

Query: 1   MNSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFV 60
           M+  L++AA  G I PF        L  L+   +N++LHV     Y +N+  E  ST FV
Sbjct: 1   MDPVLFKAAEAGNIGPFENYQT-CSLNQLLTPDENTILHV-----YLKNQSSEPESTDFV 54

Query: 61  ELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYM 120
           +  LE CP LL Q N +G++PLH+ ARYGH+ VV  LI+ A+  P    ESGV +  + M
Sbjct: 55  DKFLERCPPLLFQANKRGETPLHLEARYGHSNVVKVLIDRAKALPADP-ESGV-TKAKMM 112

Query: 121 LGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN 159
           L M N+E+DTALHEA ++    VVEIL   DP F Y AN
Sbjct: 113 LRMTNEEQDTALHEAARNRRSHVVEILTKEDPEFSYPAN 151

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127096|ref|XP_002329393.1| predicted protein [Populus trichocarpa] gi|222870443|gb|EEF07574.1| predicted protein [Populus trichocarpa]

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/160 (46%), Positives = 97/160 (60%), Gaps = 11/160 (6%)

Query: 1   MNSDLYEAAAKGVIEPFNQLAIDRQ-LGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKF 59
           M+  L++AA  G I PF     D+  L  L    +N++LHV +      N+  E  ST F
Sbjct: 5   MDPVLFKAAEAGNIGPFEN---DQTCLNQLFTPDENTILHVCL-----GNQSSEPESTYF 56

Query: 60  VELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRY 119
           V+ +LE CP LLLQ N KG+ PLH+AARYGH+ VV  LI+ A  +P  + ESGV +  + 
Sbjct: 57  VDKILEMCPPLLLQANKKGEIPLHLAARYGHSNVVRVLIDRARARP-TDPESGV-TEAKK 114

Query: 120 MLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN 159
           ML M N E+DTALHEA ++    VVEIL   DP F YSAN
Sbjct: 115 MLRMTNVEQDTALHEAARNRRGHVVEILTKEDPYFSYSAN 154

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
TAIR|locus:2170081	535	AT5G50140 "AT5G50140" [Arabido	0.577	0.173	0.315	1.3e-07
TAIR|locus:2129685	694	AT4G14390 "AT4G14390" [Arabido	0.596	0.138	0.313	1.9e-07
TAIR|locus:2128771	641	AT4G03450 "AT4G03450" [Arabido	0.602	0.151	0.323	5.9e-07
TAIR|locus:2128781	677	AT4G03460 "AT4G03460" [Arabido	0.608	0.144	0.310	1e-06
TAIR|locus:2138391	572	AT4G05040 "AT4G05040" [Arabido	0.844	0.237	0.268	1.1e-06
TAIR|locus:2129690	670	ACD6 "AT4G14400" [Arabidopsis	0.596	0.143	0.303	1.7e-06
TAIR|locus:2009046	573	AT1G34050 "AT1G34050" [Arabido	0.298	0.083	0.44	1.2e-05
POMBASE|SPBP16F5.05c	146	SPBP16F5.05c "ribosome biogene	0.496	0.547	0.278	5.3e-05
TAIR|locus:2020833	616	AT1G03670 "AT1G03670" [Arabido	0.689	0.180	0.290	0.00013
TAIR|locus:2128791	683	AT4G03470 [Arabidopsis thalian	0.571	0.134	0.329	0.0002

TAIR|locus:2170081 AT5G50140 "AT5G50140" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 30/95 (31%), Positives = 54/95 (56%)

Query:    58 KFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTT 117
             + V+ ++E  PSL+   N K D+PLH+AAR GH +++  ++E +  +  + LE  V +  
Sbjct:    41 ELVKKIVEIHPSLVSSTNTKSDTPLHLAARLGHTSILLLMLE-STAESIESLEETVPNDL 99

Query:   118 RYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADP 152
             + +  M N +  T LH AV +GS++ +   +   P
Sbjct:   100 K-LAEMVNKDGFTPLHCAVMNGSVETLTAFINKAP 133

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129685 AT4G14390 "AT4G14390" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 1.9e-07, P = 1.9e-07
 Identities = 31/99 (31%), Positives = 51/99 (51%)

Query:    61 ELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYM 120
             E+V E CP LLL+ N+ G +PLHVAA  GH  +V A +        +      +    Y+
Sbjct:   150 EIVCE-CPRLLLEQNSSGQTPLHVAAHSGHTTIVEAFVALVTFSSARLCNEESERMNPYV 208

Query:   121 LGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN 159
             L  K+ + +TAL+ A++    ++   L+ A+   P+  N
Sbjct:   209 L--KDKDGNTALYYAIEGRYFEMAVCLVNANQDAPFLGN 245

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128771 AT4G03450 "AT4G03450" [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 5.9e-07, P = 5.9e-07
 Identities = 34/105 (32%), Positives = 52/105 (49%)

Query:    58 KFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTT 117
             + V+ ++  CP LLL+ N+K   PLH AA  G  AVV A +         E+  G+    
Sbjct:    85 ELVKRIVSECPCLLLETNSKDQIPLHAAAAAGRLAVVEAFVARVN-----EISDGLSEEE 139

Query:   118 RY---MLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN 159
             R    +  MK+ + +TALH A++ G L     L+ A+    + AN
Sbjct:   140 RERVNLYAMKDIDGNTALHLALKGGHLKTAACLVKANHLASFLAN 184

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2128781 AT4G03460 "AT4G03460" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 32/103 (31%), Positives = 52/103 (50%)

Query:    57 TKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKST 116
             T  V  +L   P LL++ N+ G+  LHVAA  GH AVV AL+ F +     ++       
Sbjct:   144 TDLVCYILNAYPGLLMKSNSMGEVALHVAAGAGHLAVVEALVSFIK-----DISCNKPGV 198

Query:   117 TRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN 159
              + +   K+  +D ALH +++   L V   L+ A+ +  + AN
Sbjct:   199 AKKIYFAKDRHQDNALHVSLKRKHLKVASCLVCAEQSLSFVAN 241

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2138391 AT4G05040 "AT4G05040" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 40/149 (26%), Positives = 73/149 (48%)

Query:     1 MNSDLYEAAAKGVIEPFNQL-AIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKF 59
             MN++++   + G  E    L  +   +  L   + +SVLH   +A+   + E        
Sbjct:    81 MNTEVFSGLSDGDKECLEMLKGVGTPMACLKSDRGDSVLH---LAARWGHLE-------L 130

Query:    60 VELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRY 119
             V+ ++  CP L+L++N K   PLHVAA  GH+A+V AL+        +  E   +    Y
Sbjct:   131 VKNIISECPCLVLELNFKDQLPLHVAAHAGHSAIVEALVASVTFFSDRLAEEDRERLNPY 190

Query:   120 MLGMKNDEEDTALHEAVQSGSLDVVEILL 148
             +L  ++   +TALH A++   +++   L+
Sbjct:   191 VL--RDKYGNTALHLAIEGRYMEMAASLV 217

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129690 ACD6 "AT4G14400" [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 1.7e-06, P = 1.7e-06
 Identities = 30/99 (30%), Positives = 50/99 (50%)

Query:    61 ELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYM 120
             E++ E CP LL + N+   +PLHVA   GH  VV AL+               +    ++
Sbjct:   119 EIIFE-CPCLLFEQNSSRQTPLHVATHGGHTKVVEALVASVTSALASLSTEESEGLNPHV 177

Query:   121 LGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN 159
             L  K+++ +TAL+ A++   L++   L+ AD   P+  N
Sbjct:   178 L--KDEDGNTALYYAIEGRYLEMATCLVNADKDAPFLGN 214

GO:0008219 "cell death" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IMP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0016020 "membrane" evidence=ISS;IDA

GO:0009615 "response to virus" evidence=IEP

TAIR|locus:2009046 AT1G34050 "AT1G34050" [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
 Identities = 22/50 (44%), Positives = 33/50 (66%)

Query:    58 KFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIE--FAEKQP 105
             + VE +++ CPSL+   N  GD+PLH AAR+GHA +V  ++   +AE  P
Sbjct:    68 EIVEAIIKLCPSLVGVTNLDGDTPLHFAARWGHATIVAQILASGYAEFTP 117

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

POMBASE|SPBP16F5.05c SPBP16F5.05c "ribosome biogenesis protein Nop8 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 102 (41.0 bits), Expect = 5.3e-05, P = 5.3e-05
 Identities = 27/97 (27%), Positives = 51/97 (52%)

Query:    58 KFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTT 117
             + ++ ++E CP  L + +  G+S LH+A+  GH AVV  +I +  K+             
Sbjct:    16 ELLDEIIEKCPQELSRRDENGNSGLHMASANGHIAVVQKIIPYLNKE------------- 62

Query:   118 RYMLGMKNDEEDTALHEAVQSGSLDVVEILL--GADP 152
               ++  +N+  +TA+H A  +G  ++ ++LL  G DP
Sbjct:    63 --VINAQNESGNTAMHWAALNGHAEICKLLLEAGGDP 97

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0030688 "preribosome, small subunit precursor" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TAIR|locus:2020833 AT1G03670 "AT1G03670" [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 0.00013, P = 0.00013
 Identities = 38/131 (29%), Positives = 58/131 (44%)

Query:    29 LVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARY 88
             LV ++ NS+LH+     +             VE ++ T P+LL  VN  G++ LHVAAR 
Sbjct:    67 LVDNQGNSILHIAAALGHVH----------IVEFIISTFPNLLQNVNLMGETTLHVAARA 116

Query:    89 GHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILL 148
             G   +V  L+ F  +    +     KS        KN   DTALH A++   ++V   L+
Sbjct:   117 GSLNIVEILVRFITESSSYDAFIAAKS--------KNG--DTALHAALKGKHVEVAFCLV 166

Query:   149 GADPAFPYSAN 159
                    +  N
Sbjct:   167 SVKHDVSFDKN 177

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128791 AT4G03470 [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 0.00020, P = 0.00020
 Identities = 31/94 (32%), Positives = 49/94 (52%)

Query:    58 KFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTT 117
             + V+ ++  C  LL++ N+K   PLHVAAR GH AVV  L+        +  E   +   
Sbjct:   133 ELVKNIVSECSCLLMESNSKDQLPLHVAARMGHLAVVEDLVASVTFFSARLAEEDREILN 192

Query:   118 RYMLGMKNDEEDTALHEAVQSGSLDVVEILLGAD 151
              Y+L  K+   DTAL+ A++    +V   L+ A+
Sbjct:   193 PYLL--KDINGDTALNLALKGHYTEVALCLVNAN 224

GO:0005739 "mitochondrion" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.01200022	hypothetical protein (281 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pg.C_LG_I003169	hypothetical protein (278 aa)			•						0.449
	eugene3.00051263	annotation not avaliable (398 aa)			•						0.409
	gw1.57.246.1	hypothetical protein (392 aa)			•						0.406

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	161
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-09
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-09
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	7e-09
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-08
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	5e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.001

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 51.5 bits (124), Expect = 2e-09
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 22/99 (22%)

Query: 56  STKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKS 115
           + + V+L+LE    + L      D+ LH+AAR G+  +V  L+E            G   
Sbjct: 9   NLELVKLLLEKGADVNLGDT---DTALHLAARNGNLEIVKLLLEH-----------GADV 54

Query: 116 TTRYMLGMKNDEEDTALHEAVQSGSLDVVEILL--GADP 152
             +   G       TALH A ++G+L++V++LL  GAD 
Sbjct: 55  NAKDKDGN------TALHLAARNGNLEIVKLLLEHGADI 87

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 51.6 bits (124), Expect = 4e-09
 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 18/93 (19%)

Query: 56  STKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKS 115
             + V+L+LE    +  + +  G++PLH+AAR G+  VV  L++                
Sbjct: 52  HLEIVKLLLEKGADVNAR-DKDGNTPLHLAARNGNLDVVKLLLKH--------------- 95

Query: 116 TTRYMLGMKNDEEDTALHEAVQSGSLDVVEILL 148
                +  ++ +  T LH A ++G L+VV++LL
Sbjct: 96  --GADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 50.8 bits (122), Expect = 7e-09
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 19/82 (23%)

Query: 73  QVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTAL 132
             +  G +PLH+AA  GH  VV  L+E                     +  K+++  T L
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENG-----------------ADVNAKDNDGRTPL 44

Query: 133 HEAVQSGSLDVVEILL--GADP 152
           H A ++G L++V++LL  GAD 
Sbjct: 45  HLAAKNGHLEIVKLLLEKGADV 66

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 49.3 bits (118), Expect = 2e-08
 Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 20/97 (20%)

Query: 58  KFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTT 117
           + V+L+LE    +  + +  G +PLH+AA+ GH  +V  L+E                  
Sbjct: 21  EVVKLLLENGADVNAK-DNDGRTPLHLAAKNGHLEIVKLLLEK----------------- 62

Query: 118 RYMLGMKNDEEDTALHEAVQSGSLDVVEILL--GADP 152
              +  ++ + +T LH A ++G+LDVV++LL  GAD 
Sbjct: 63  GADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADV 99

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 41.1 bits (97), Expect = 1e-05
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 21/73 (28%)

Query: 82  LHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSL 141
           LH+AA+ G+  +V  L           LE G          +   + DTALH A ++G+L
Sbjct: 1   LHLAAKNGNLELVKLL-----------LEKGAD--------VNLGDTDTALHLAARNGNL 41

Query: 142 DVVEILL--GADP 152
           ++V++LL  GAD 
Sbjct: 42  EIVKLLLEHGADV 54

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 37.6 bits (88), Expect = 1e-04
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 17/71 (23%)

Query: 78  GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQ 137
           G + LH AA  G   +V  L           LE GV       +   +++ +TALH A +
Sbjct: 1   GRTALHKAAISGRLELVKYL-----------LEKGVD------INRTDEDGNTALHIAAE 43

Query: 138 SGSLDVVEILL 148
           +G+L+V+++LL
Sbjct: 44  NGNLEVLKLLL 54

Length = 54

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 35.6 bits (83), Expect = 5e-04
 Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)

Query: 129 DTALHEAVQSGSLDVVEILL--GADP 152
           +T LH A ++G L+VV++LL  GAD 
Sbjct: 3   NTPLHLAARNGHLEVVKLLLEAGADV 28

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 34.5 bits (80), Expect = 0.001
 Identities = 13/24 (54%), Positives = 17/24 (70%)

Query: 77  KGDSPLHVAARYGHAAVVGALIEF 100
            G++PLH+AAR GH  VV  L+E 
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEA 24

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	161
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.96
PHA02791	284	ankyrin-like protein; Provisional	99.95
PHA02791	284	ankyrin-like protein; Provisional	99.95
PHA02875	413	ankyrin repeat protein; Provisional	99.94
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.93
PHA02743	166	Viral ankyrin protein; Provisional	99.93
PHA02859	209	ankyrin repeat protein; Provisional	99.93
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.92
PHA02874	434	ankyrin repeat protein; Provisional	99.92
PHA03100	480	ankyrin repeat protein; Provisional	99.92
PHA02874	434	ankyrin repeat protein; Provisional	99.92
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.92
PHA02878	477	ankyrin repeat protein; Provisional	99.91
PHA02798	489	ankyrin-like protein; Provisional	99.91
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.91
PHA02875	413	ankyrin repeat protein; Provisional	99.91
PHA02878	477	ankyrin repeat protein; Provisional	99.91
PHA02859	209	ankyrin repeat protein; Provisional	99.9
PHA03100	480	ankyrin repeat protein; Provisional	99.9
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.9
KOG0510	929	consensus Ankyrin repeat protein [General function	99.9
PHA02946	446	ankyin-like protein; Provisional	99.9
PHA02741	169	hypothetical protein; Provisional	99.9
PHA02989	494	ankyrin repeat protein; Provisional	99.9
PHA02736	154	Viral ankyrin protein; Provisional	99.89
PHA02876	682	ankyrin repeat protein; Provisional	99.88
PHA02884	300	ankyrin repeat protein; Provisional	99.88
KOG0508	615	consensus Ankyrin repeat protein [General function	99.88
KOG0514	452	consensus Ankyrin repeat protein [General function	99.88
PHA02946	446	ankyin-like protein; Provisional	99.87
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.87
PHA02989	494	ankyrin repeat protein; Provisional	99.87
PHA02795	437	ankyrin-like protein; Provisional	99.87
PHA03095	471	ankyrin-like protein; Provisional	99.87
PHA03095	471	ankyrin-like protein; Provisional	99.87
KOG0508	615	consensus Ankyrin repeat protein [General function	99.86
PHA02798	489	ankyrin-like protein; Provisional	99.85
PHA02795	437	ankyrin-like protein; Provisional	99.85
PHA02917	661	ankyrin-like protein; Provisional	99.85
KOG0510	929	consensus Ankyrin repeat protein [General function	99.85
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.85
PHA02876	682	ankyrin repeat protein; Provisional	99.84
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.83
PHA02917	661	ankyrin-like protein; Provisional	99.83
PHA02730	672	ankyrin-like protein; Provisional	99.82
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.82
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.81
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.81
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.8
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.8
PHA02741	169	hypothetical protein; Provisional	99.79
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.79
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.79
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.78
PHA02792	631	ankyrin-like protein; Provisional	99.77
PHA02730	672	ankyrin-like protein; Provisional	99.77
PHA02884	300	ankyrin repeat protein; Provisional	99.76
PHA02743	166	Viral ankyrin protein; Provisional	99.74
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.73
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.72
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.72
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.71
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.71
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.7
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.69
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.69
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.68
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.67
PHA02792	631	ankyrin-like protein; Provisional	99.67
KOG0514	452	consensus Ankyrin repeat protein [General function	99.67
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.66
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.64
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.62
PHA02736	154	Viral ankyrin protein; Provisional	99.61
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.61
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.61
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.57
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.56
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.54
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.49
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.49
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.49
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.49
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.47
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.44
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.4
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.36
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.25
PF13606	30	Ank_3: Ankyrin repeat	99.2
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	99.14
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	99.13
PF13606	30	Ank_3: Ankyrin repeat	99.05
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.02
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.02
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.96
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.95
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.9
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.89
KOG0522	560	consensus Ankyrin repeat protein [General function	98.84
KOG0522	560	consensus Ankyrin repeat protein [General function	98.82
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.76
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.71
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.68
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.67
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.54
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.5
KOG2384	223	consensus Major histocompatibility complex protein	98.49
KOG0511	516	consensus Ankyrin repeat protein [General function	98.23
KOG0511	516	consensus Ankyrin repeat protein [General function	98.21
KOG2384	223	consensus Major histocompatibility complex protein	98.02
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.93
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.89
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.86
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.85
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.52
KOG2505	591	consensus Ankyrin repeat protein [General function	97.33
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.21
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.27
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.44
KOG2505	591	consensus Ankyrin repeat protein [General function	95.3
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	93.65
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	84.11

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=9.6e-30  Score=163.08  Aligned_cols=146  Identities=19%  Similarity=0.159  Sum_probs=123.6

Q ss_pred             hHHHHHHHcCChHHHHHHHh-hhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHh-CccchhccCCCCCc
Q 048100            3 SDLYEAAAKGVIEPFNQLAI-DRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLET-CPSLLLQVNAKGDS   80 (161)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~-~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~t   80 (161)
                      |||||||..|+.+++++|+. .+..++.+|..|+||||+|+   ..|       ..++|+.|+.+ +++ ++..+..|.|
T Consensus        40 t~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~---s~g-------~~evVk~Ll~r~~ad-vna~tn~G~T  108 (226)
T KOG4412|consen   40 TPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAA---SNG-------NDEVVKELLNRSGAD-VNATTNGGQT  108 (226)
T ss_pred             ceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhh---hcC-------cHHHHHHHhcCCCCC-cceecCCCcc
Confidence            78999999999999999994 45667888999999999954   444       37899999998 666 6888999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHhhhcCCch----------hhhcCchhHHHHHh------hccCCCCCcHhHHHHHcCCHHHH
Q 048100           81 PLHVAARYGHAAVVGALIEFAEKQPGQ----------ELESGVKSTTRYML------GMKNDEEDTALHEAVQSGSLDVV  144 (161)
Q Consensus        81 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~----------~~~~~~~~~~~~l~------~~~~~~g~t~l~~a~~~~~~~~~  144 (161)
                      |||||+..|..+++++|++.|+.+..+          ++.-|...++++|+      +.+|..|+||||.|...|+.+.+
T Consensus       109 ~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a  188 (226)
T KOG4412|consen  109 CLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVA  188 (226)
T ss_pred             eehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHH
Confidence            999999999999999999999876555          35555566788875      67899999999999888999999


Q ss_pred             HHHHhCCCCCCCCcC
Q 048100          145 EILLGADPAFPYSAN  159 (161)
Q Consensus       145 ~~Ll~~~~~~~~~~~  159 (161)
                      .+|+++|+++...++
T Consensus       189 ~lLV~~gAd~~~edk  203 (226)
T KOG4412|consen  189 VLLVRAGADTDREDK  203 (226)
T ss_pred             HHHHHhccceeeccc
Confidence            999999988876654

>PHA02791 ankyrin-like protein; Provisional

Probab=99.95  E-value=3.7e-26  Score=161.43  Aligned_cols=142  Identities=20%  Similarity=0.179  Sum_probs=79.8

Q ss_pred             hHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHH
Q 048100            3 SDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPL   82 (161)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (161)
                      ||||+|+..|+.+.++.|++.+...+..+  |.||||+|   +..|       ..+++++|++.|++ ++..|..|+|||
T Consensus        32 TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~A---a~~g-------~~eiV~lLL~~Gad-vn~~d~~G~TpL   98 (284)
T PHA02791         32 SALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQA---ATLE-------DTKIVKILLFSGMD-DSQFDDKGNTAL   98 (284)
T ss_pred             cHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHH---HHCC-------CHHHHHHHHHCCCC-CCCCCCCCCCHH
Confidence            56666666666666666666555544432  45666663   3333       25666666666655 344566666666


Q ss_pred             HHHHHhCCHHHHHHHHHhhhcCCch-----------hhhcCchhHHHHHhhc----cC-CCCCcHhHHHHHcCCHHHHHH
Q 048100           83 HVAARYGHAAVVGALIEFAEKQPGQ-----------ELESGVKSTTRYMLGM----KN-DEEDTALHEAVQSGSLDVVEI  146 (161)
Q Consensus        83 ~~a~~~~~~~~~~~Ll~~g~~~~~~-----------~~~~~~~~~~~~l~~~----~~-~~g~t~l~~a~~~~~~~~~~~  146 (161)
                      |+|+..|+.+++++|++.|++.+..           +...|+.+++++|+..    .| ..|.||||+|+..|+.+++++
T Consensus        99 h~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~~~g~TpLh~Aa~~g~~eiv~l  178 (284)
T PHA02791         99 YYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMIL  178 (284)
T ss_pred             HHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcccccccCccHHHHHHHcCCHHHHHH
Confidence            6666666666666666666554322           2334444555555542    12 135666666666666666666


Q ss_pred             HHhCCCCCCCC
Q 048100          147 LLGADPAFPYS  157 (161)
Q Consensus       147 Ll~~~~~~~~~  157 (161)
                      |+++|++++.+
T Consensus       179 LL~~gAd~n~~  189 (284)
T PHA02791        179 LLDYMTSTNTN  189 (284)
T ss_pred             HHHCCCCCCcc
Confidence            66666665543

>PHA02791 ankyrin-like protein; Provisional

Probab=99.95  E-value=3.9e-26  Score=161.30  Aligned_cols=147  Identities=14%  Similarity=0.068  Sum_probs=126.5

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCC-c
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGD-S   80 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~-t   80 (161)
                      .||||.|+..|+.+.++.|+..+..++..|..|.||||+|   +..+       ..+++++|++.|+++ +..+..|+ |
T Consensus        62 ~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~A---a~~g-------~~eivk~Ll~~gadi-n~~~~~g~~T  130 (284)
T PHA02791         62 EFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYA---VDSG-------NMQTVKLFVKKNWRL-MFYGKTGWKT  130 (284)
T ss_pred             CCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH---HHcC-------CHHHHHHHHHCCCCc-CccCCCCCcH
Confidence            4899999999999999999999999999999999999995   4455       489999999999874 56677775 8


Q ss_pred             HHHHHHHhCCHHHHHHHHHhhhcCCc----h-----hhhcCchhHHHHHh------hccCCCCCcH-hHHHHHcCCHHHH
Q 048100           81 PLHVAARYGHAAVVGALIEFAEKQPG----Q-----ELESGVKSTTRYML------GMKNDEEDTA-LHEAVQSGSLDVV  144 (161)
Q Consensus        81 ~l~~a~~~~~~~~~~~Ll~~g~~~~~----~-----~~~~~~~~~~~~l~------~~~~~~g~t~-l~~a~~~~~~~~~  144 (161)
                      |||+|+..|+.+++++|++.+.....    .     +...|+.+++++|+      +.+|..|.|| ||+|+..|+.+++
T Consensus       131 pL~~Aa~~g~~eivk~LL~~~~~~~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v  210 (284)
T PHA02791        131 SFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEML  210 (284)
T ss_pred             HHHHHHHcCCHHHHHHHHhcCCcccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHH
Confidence            99999999999999999998643211    1     56888889999997      4566788876 9999999999999


Q ss_pred             HHHHhCCCCCCCCcC
Q 048100          145 EILLGADPAFPYSAN  159 (161)
Q Consensus       145 ~~Ll~~~~~~~~~~~  159 (161)
                      ++|+.+|++++..+.
T Consensus       211 ~lLl~~Ga~in~~~~  225 (284)
T PHA02791        211 QALFKYDINIYSVNL  225 (284)
T ss_pred             HHHHHCCCCCccCcc
Confidence            999999999987654

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.94  E-value=4e-25  Score=164.66  Aligned_cols=147  Identities=18%  Similarity=0.141  Sum_probs=93.8

Q ss_pred             hHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHH
Q 048100            3 SDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPL   82 (161)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (161)
                      ||||.|+..|+.+.++.|++.+..++..+..+.||||+|+   ..|       ..+++++|++.+.......+..|.|||
T Consensus        37 tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~---~~g-------~~~~v~~Ll~~~~~~~~~~~~~g~tpL  106 (413)
T PHA02875         37 SPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAV---EEG-------DVKAVEELLDLGKFADDVFYKDGMTPL  106 (413)
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHH---HCC-------CHHHHHHHHHcCCcccccccCCCCCHH
Confidence            3444444444444444444444444444444444444422   122       355666666665544344456788888


Q ss_pred             HHHHHhCCHHHHHHHHHhhhcCCch----------hhhcCchhHHHHHh------hccCCCCCcHhHHHHHcCCHHHHHH
Q 048100           83 HVAARYGHAAVVGALIEFAEKQPGQ----------ELESGVKSTTRYML------GMKNDEEDTALHEAVQSGSLDVVEI  146 (161)
Q Consensus        83 ~~a~~~~~~~~~~~Ll~~g~~~~~~----------~~~~~~~~~~~~l~------~~~~~~g~t~l~~a~~~~~~~~~~~  146 (161)
                      |+|+..|+.+++++|++.|++....          +...|..+++++|+      +.+|..|.||||+|+..|+.+++++
T Consensus       107 ~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~  186 (413)
T PHA02875        107 HLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKM  186 (413)
T ss_pred             HHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            8888888888888888888776544          34556666777775      4567788889998888888888888


Q ss_pred             HHhCCCCCCCCcC
Q 048100          147 LLGADPAFPYSAN  159 (161)
Q Consensus       147 Ll~~~~~~~~~~~  159 (161)
                      |++.|++++..+.
T Consensus       187 Ll~~ga~~n~~~~  199 (413)
T PHA02875        187 LLDSGANIDYFGK  199 (413)
T ss_pred             HHhCCCCCCcCCC
Confidence            8888888876543

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.1e-25  Score=144.59  Aligned_cols=148  Identities=20%  Similarity=0.184  Sum_probs=124.3

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhC-ccccccC-CCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCC
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQ-LGSLVIH-KKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGD   79 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~-~~~~~~~-~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~   79 (161)
                      +++.+.+++..-...++.+++... ..+.++. +|+|||||   ++..|+       .+++.||++.....++..|..||
T Consensus         4 ~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHw---a~S~g~-------~eiv~fLlsq~nv~~ddkDdaGW   73 (226)
T KOG4412|consen    4 ASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHW---ACSFGH-------VEIVYFLLSQPNVKPDDKDDAGW   73 (226)
T ss_pred             cchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeee---eeecCc-------hhHHHHHHhcCCCCCCCccccCC
Confidence            467778888888888888875443 3445544 99999999   666664       88999999855445677899999


Q ss_pred             cHHHHHHHhCCHHHHHHHHHh-hhcCCch----------hhhcCchhHHHHHh------hccCCCCCcHhHHHHHcCCHH
Q 048100           80 SPLHVAARYGHAAVVGALIEF-AEKQPGQ----------ELESGVKSTTRYML------GMKNDEEDTALHEAVQSGSLD  142 (161)
Q Consensus        80 t~l~~a~~~~~~~~~~~Ll~~-g~~~~~~----------~~~~~~~~~~~~l~------~~~~~~g~t~l~~a~~~~~~~  142 (161)
                      ||||+|+..|+.++|+-|+.+ |++.+..          ++.+|+.+++++|+      +.+|..|.||||.|+..|..+
T Consensus        74 tPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklk  153 (226)
T KOG4412|consen   74 TPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLK  153 (226)
T ss_pred             chhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchh
Confidence            999999999999999999998 8887666          67889999999996      689999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCcC
Q 048100          143 VVEILLGADPAFPYSAN  159 (161)
Q Consensus       143 ~~~~Ll~~~~~~~~~~~  159 (161)
                      ++++|+..|+.++.++.
T Consensus       154 vie~Li~~~a~~n~qDk  170 (226)
T KOG4412|consen  154 VIEYLISQGAPLNTQDK  170 (226)
T ss_pred             hHHHHHhcCCCCCcccc
Confidence            99999999998887653

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.93  E-value=1.3e-24  Score=143.18  Aligned_cols=132  Identities=18%  Similarity=0.185  Sum_probs=111.2

Q ss_pred             hHHHHHHHcCChH----HHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccC-CC
Q 048100            3 SDLYEAAAKGVIE----PFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVN-AK   77 (161)
Q Consensus         3 ~~l~~A~~~g~~~----~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~-~~   77 (161)
                      ++||.|++.|+++    .++.|++.+...+.+|..|.||||+|+   ..++..    ..+++++|++.|++ ++.++ ..
T Consensus        22 ~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa---~~g~~~----~~~~i~~Ll~~Gad-in~~d~~~   93 (166)
T PHA02743         22 NTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVA---WYDRAN----AVMKIELLVNMGAD-INARELGT   93 (166)
T ss_pred             cHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHH---HhCccC----HHHHHHHHHHcCCC-CCCCCCCC
Confidence            5799999999985    444566777788889999999999954   444311    24568999999987 46666 58


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHH-hhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCC
Q 048100           78 GDSPLHVAARYGHAAVVGALIE-FAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPY  156 (161)
Q Consensus        78 ~~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~  156 (161)
                      |.||||+|+..++.+++++|++ .|++                 ++.++..|.||||+|+..++.+++++|+.+|++++.
T Consensus        94 g~TpLh~A~~~g~~~iv~~Ll~~~gad-----------------~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~  156 (166)
T PHA02743         94 GNTLLHIAASTKNYELAEWLCRQLGVN-----------------LGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDD  156 (166)
T ss_pred             CCcHHHHHHHhCCHHHHHHHHhccCCC-----------------ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            9999999999999999999995 7887                 777899999999999999999999999999999987


Q ss_pred             CcC
Q 048100          157 SAN  159 (161)
Q Consensus       157 ~~~  159 (161)
                      +++
T Consensus       157 ~~~  159 (166)
T PHA02743        157 PLS  159 (166)
T ss_pred             ccc
Confidence            665

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.93  E-value=3e-24  Score=146.34  Aligned_cols=146  Identities=9%  Similarity=0.048  Sum_probs=108.6

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccC-CCCCc
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVN-AKGDS   80 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~-~~~~t   80 (161)
                      .+||+.|+..|+++.|+.|+..   .+..+..|.||||+|+... .+       ..+++++|+++|+++ +..+ ..|+|
T Consensus        22 ~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~-~~-------~~eiv~~Ll~~gadv-n~~~~~~g~T   89 (209)
T PHA02859         22 CNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKD-KV-------NVEILKFLIENGADV-NFKTRDNNLS   89 (209)
T ss_pred             CcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcC-CC-------CHHHHHHHHHCCCCC-CccCCCCCCC
Confidence            4788888888888888888754   4557788888888854321 12       378888888888874 4444 57888


Q ss_pred             HHHHHHHh---CCHHHHHHHHHhhhcCCchh------------hhcCchhHHHHHh------hccCCCCCcHhHH-HHHc
Q 048100           81 PLHVAARY---GHAAVVGALIEFAEKQPGQE------------LESGVKSTTRYML------GMKNDEEDTALHE-AVQS  138 (161)
Q Consensus        81 ~l~~a~~~---~~~~~~~~Ll~~g~~~~~~~------------~~~~~~~~~~~l~------~~~~~~g~t~l~~-a~~~  138 (161)
                      |||+|+..   ++.+++++|+++|++++...            ...++.+++++|+      +.+|..|.||||. ++..
T Consensus        90 pLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~  169 (209)
T PHA02859         90 ALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFH  169 (209)
T ss_pred             HHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhc
Confidence            88887653   46888888888888876551            1134455666665      5688899999995 5678


Q ss_pred             CCHHHHHHHHhCCCCCCCCcC
Q 048100          139 GSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       139 ~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                      ++.+++++|++.|++++.+++
T Consensus       170 ~~~~iv~~Ll~~Gadi~~~d~  190 (209)
T PHA02859        170 SDKKIFDFLTSLGIDINETNK  190 (209)
T ss_pred             CCHHHHHHHHHcCCCCCCCCC
Confidence            899999999999999987654

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.92  E-value=5e-24  Score=169.96  Aligned_cols=148  Identities=18%  Similarity=0.215  Sum_probs=131.2

Q ss_pred             CChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCc
Q 048100            1 MNSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDS   80 (161)
Q Consensus         1 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t   80 (161)
                      |.++|+.|+..|+.+.++.|++.+.+++..|..|.||||+|   +..|       +.+++++|+++|++ ++..|.+|+|
T Consensus       525 ~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~A---a~~g-------~~~~v~~Ll~~gad-in~~d~~G~T  593 (823)
T PLN03192        525 MASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIA---ASKG-------YEDCVLVLLKHACN-VHIRDANGNT  593 (823)
T ss_pred             chhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH---HHcC-------hHHHHHHHHhcCCC-CCCcCCCCCC
Confidence            46789999999999999999999999999999999999994   4555       48899999999987 5778999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHhhhcCCch--------hhhcCchhHHHHHh------hccCCCCCcHhHHHHHcCCHHHHHH
Q 048100           81 PLHVAARYGHAAVVGALIEFAEKQPGQ--------ELESGVKSTTRYML------GMKNDEEDTALHEAVQSGSLDVVEI  146 (161)
Q Consensus        81 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~--------~~~~~~~~~~~~l~------~~~~~~g~t~l~~a~~~~~~~~~~~  146 (161)
                      |||+|+..|+.+++++|++.++.....        +...|+.++++.++      +.+|..|+||||+|+..|+.+++++
T Consensus       594 pL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~  673 (823)
T PLN03192        594 ALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRL  673 (823)
T ss_pred             HHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHH
Confidence            999999999999999999887654322        56788888999886      5789999999999999999999999


Q ss_pred             HHhCCCCCCCCcC
Q 048100          147 LLGADPAFPYSAN  159 (161)
Q Consensus       147 Ll~~~~~~~~~~~  159 (161)
                      |+++|++++..++
T Consensus       674 Ll~~GAdv~~~~~  686 (823)
T PLN03192        674 LIMNGADVDKANT  686 (823)
T ss_pred             HHHcCCCCCCCCC
Confidence            9999999987654

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.92  E-value=7.6e-24  Score=158.72  Aligned_cols=147  Identities=22%  Similarity=0.297  Sum_probs=125.1

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      .||||.|+..|+.+.+++|++.+..++.+|..|.||||+|+   ..+       ..+++++|++.|++ ++..+..|.||
T Consensus       125 ~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~---~~~-------~~~iv~~Ll~~g~~-~n~~~~~g~tp  193 (434)
T PHA02874        125 KTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAI---KHN-------FFDIIKLLLEKGAY-ANVKDNNGESP  193 (434)
T ss_pred             ccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHH---HCC-------cHHHHHHHHHCCCC-CCCCCCCCCCH
Confidence            48999999999999999999999999999999999999954   444       48999999999987 46778999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchh----------HHHHH-----hhccCCCCCcHhHHHHHcC-CHHHHH
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQELESGVKS----------TTRYM-----LGMKNDEEDTALHEAVQSG-SLDVVE  145 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~----------~~~~l-----~~~~~~~g~t~l~~a~~~~-~~~~~~  145 (161)
                      ||+|+..|+.+++++|++.|++.... ...|..+          .+.++     ++.+|..|+||||+|+..+ +.++++
T Consensus       194 L~~A~~~g~~~iv~~Ll~~g~~i~~~-~~~g~TpL~~A~~~~~~~i~~Ll~~~~in~~d~~G~TpLh~A~~~~~~~~iv~  272 (434)
T PHA02874        194 LHNAAEYGDYACIKLLIDHGNHIMNK-CKNGFTPLHNAIIHNRSAIELLINNASINDQDIDGSTPLHHAINPPCDIDIID  272 (434)
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCcCC-CCCCCCHHHHHHHCChHHHHHHHcCCCCCCcCCCCCCHHHHHHhcCCcHHHHH
Confidence            99999999999999999999886555 3344443          34444     3578889999999999975 899999


Q ss_pred             HHHhCCCCCCCCcCC
Q 048100          146 ILLGADPAFPYSANG  160 (161)
Q Consensus       146 ~Ll~~~~~~~~~~~~  160 (161)
                      +|+..|++++.+++.
T Consensus       273 ~Ll~~gad~n~~d~~  287 (434)
T PHA02874        273 ILLYHKADISIKDNK  287 (434)
T ss_pred             HHHHCcCCCCCCCCC
Confidence            999999999877653

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.92  E-value=1e-23  Score=159.80  Aligned_cols=149  Identities=18%  Similarity=0.199  Sum_probs=123.7

Q ss_pred             ChHHHHHH--HcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCC
Q 048100            2 NSDLYEAA--AKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGD   79 (161)
Q Consensus         2 ~~~l~~A~--~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~   79 (161)
                      .||||.|+  ..|+.+.++.|++.+...+..+..|.||||+|+   ..+.     ...+++++|+++|++ ++..+..|.
T Consensus       107 ~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~---~~~~-----~~~~iv~~Ll~~g~d-in~~d~~g~  177 (480)
T PHA03100        107 ITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYL---ESNK-----IDLKILKLLIDKGVD-INAKNRYGY  177 (480)
T ss_pred             CchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHH---HcCC-----ChHHHHHHHHHCCCC-cccccCCCC
Confidence            47888998  888999999988888888888888999999944   3331     137899999999988 466788999


Q ss_pred             cHHHHHHHhCCHHHHHHHHHhhhcCCch----------------hhhcCc--hhHHHHHh------hccCCCCCcHhHHH
Q 048100           80 SPLHVAARYGHAAVVGALIEFAEKQPGQ----------------ELESGV--KSTTRYML------GMKNDEEDTALHEA  135 (161)
Q Consensus        80 t~l~~a~~~~~~~~~~~Ll~~g~~~~~~----------------~~~~~~--~~~~~~l~------~~~~~~g~t~l~~a  135 (161)
                      ||||+|+..|+.+++++|+++|++....                +...+.  .+++++|+      +.+|..|.||||+|
T Consensus       178 tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A  257 (480)
T PHA03100        178 TPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYA  257 (480)
T ss_pred             CHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            9999999999999999999999886533                234455  77888876      45788999999999


Q ss_pred             HHcCCHHHHHHHHhCCCCCCCCcC
Q 048100          136 VQSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       136 ~~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                      +..|+.+++++|++.|++++.++.
T Consensus       258 ~~~~~~~iv~~Ll~~gad~n~~d~  281 (480)
T PHA03100        258 VYNNNPEFVKYLLDLGANPNLVNK  281 (480)
T ss_pred             HHcCCHHHHHHHHHcCCCCCccCC
Confidence            999999999999999999887654

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.92  E-value=2.2e-23  Score=156.21  Aligned_cols=147  Identities=14%  Similarity=0.199  Sum_probs=122.7

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccc-----------
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSL-----------   70 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~-----------   70 (161)
                      .||||.|++.|+.+.|++|++.+...+..+..|.||||+|+.   .|       ..+++++|++.|++.           
T Consensus        36 ~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~---~~-------~~~iv~~Ll~~g~~~~~~~~~~~~~~  105 (434)
T PHA02874         36 TTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIK---IG-------AHDIIKLLIDNGVDTSILPIPCIEKD  105 (434)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH---cC-------CHHHHHHHHHCCCCCCcchhccCCHH
Confidence            489999999999999999999999999999999999999554   33       356666666655431           


Q ss_pred             -----------hhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCch----------hhhcCchhHHHHHh------hc
Q 048100           71 -----------LLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQ----------ELESGVKSTTRYML------GM  123 (161)
Q Consensus        71 -----------~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~----------~~~~~~~~~~~~l~------~~  123 (161)
                                 ++..+..|.||||+|+..|+.+++++|++.|++....          +...+..+++++|+      +.
T Consensus       106 ~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~  185 (434)
T PHA02874        106 MIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANV  185 (434)
T ss_pred             HHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCC
Confidence                       3456888999999999999999999999999886554          45666777888886      46


Q ss_pred             cCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCc
Q 048100          124 KNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSA  158 (161)
Q Consensus       124 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  158 (161)
                      .+..|.||||+|+..|+.+++++|++.|++++.++
T Consensus       186 ~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~  220 (434)
T PHA02874        186 KDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKC  220 (434)
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCC
Confidence            78899999999999999999999999999887554

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.92  E-value=2.1e-24  Score=160.63  Aligned_cols=145  Identities=21%  Similarity=0.256  Sum_probs=122.1

Q ss_pred             HHHHHHHcCChHHHHHHHhh-hCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHH
Q 048100            4 DLYEAAAKGVIEPFNQLAID-RQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPL   82 (161)
Q Consensus         4 ~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (161)
                      .++.|++.|+++.++.+++. +...+..|.+|.|+||||+.   .+       +++++++|+++|+++.......+.|||
T Consensus        47 ~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAi---NN-------rl~v~r~li~~gadvn~~gG~l~stPL  116 (600)
T KOG0509|consen   47 DIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAI---NN-------RLDVARYLISHGADVNAIGGVLGSTPL  116 (600)
T ss_pred             hhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHH---cC-------cHHHHHHHHHcCCCccccCCCCCCCcc
Confidence            57889999999999999988 88888899999999999543   33       599999999999996555568899999


Q ss_pred             HHHHHhCCHHHHHHHHHhhhcCCch----------hhhcCchhHHHHHh------hccCCCCCcHhHHHHHcCCHHHHHH
Q 048100           83 HVAARYGHAAVVGALIEFAEKQPGQ----------ELESGVKSTTRYML------GMKNDEEDTALHEAVQSGSLDVVEI  146 (161)
Q Consensus        83 ~~a~~~~~~~~~~~Ll~~g~~~~~~----------~~~~~~~~~~~~l~------~~~~~~g~t~l~~a~~~~~~~~~~~  146 (161)
                      |+|+++|+..+|.+|+++|+++...          +...++..++-+++      +++|.+|+|||+||+.+|+...+..
T Consensus       117 HWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~  196 (600)
T KOG0509|consen  117 HWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRR  196 (600)
T ss_pred             hHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHH
Confidence            9999999999999999999997666          45566666666664      6888899999999999888887888


Q ss_pred             HHhCCCCCCCCc
Q 048100          147 LLGADPAFPYSA  158 (161)
Q Consensus       147 Ll~~~~~~~~~~  158 (161)
                      ||..|+.+...+
T Consensus       197 LL~f~a~~~~~d  208 (600)
T KOG0509|consen  197 LLKFGASLLLTD  208 (600)
T ss_pred             HHHhcccccccc
Confidence            888888877665

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.91  E-value=1.1e-23  Score=159.52  Aligned_cols=156  Identities=15%  Similarity=0.188  Sum_probs=126.2

Q ss_pred             hHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhh----------------------------ccc----
Q 048100            3 SDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYT----------------------------QNK----   50 (161)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~----------------------------~~~----   50 (161)
                      ||||.|++.|+.+.|+.|++.+.+++.+|..|.||||+|+..+..                            ++.    
T Consensus        39 tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~~  118 (477)
T PHA02878         39 IPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFK  118 (477)
T ss_pred             chHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHHH
Confidence            799999999999999999999999999999999999997643210                            000    


Q ss_pred             -------c---------------cccccHHHHHHHHHhCccchhccCCC-CCcHHHHHHHhCCHHHHHHHHHhhhcCCch
Q 048100           51 -------E---------------GESVSTKFVELVLETCPSLLLQVNAK-GDSPLHVAARYGHAAVVGALIEFAEKQPGQ  107 (161)
Q Consensus        51 -------~---------------~~~~~~~~v~~Ll~~~~~~~~~~~~~-~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~  107 (161)
                             .               ......+++++|++.|++ ++..+.. |.||||+|+..|+.+++++|++.|++.+..
T Consensus       119 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gad-in~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~  197 (477)
T PHA02878        119 IILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGAD-INMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIP  197 (477)
T ss_pred             HHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCC-CCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCc
Confidence                   0               000123488889998887 4666777 999999999999999999999999987654


Q ss_pred             ----------hhhcCchhHHHHHh------hccCCCCCcHhHHHHHc-CCHHHHHHHHhCCCCCCCCcC
Q 048100          108 ----------ELESGVKSTTRYML------GMKNDEEDTALHEAVQS-GSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       108 ----------~~~~~~~~~~~~l~------~~~~~~g~t~l~~a~~~-~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                                +...++.+++++|+      +.+|..|.||||+|+.. ++.+++++|++.|++++.+++
T Consensus       198 d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~  266 (477)
T PHA02878        198 DKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSY  266 (477)
T ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCC
Confidence                      45666677888886      46889999999999975 799999999999999987653

>PHA02798 ankyrin-like protein; Provisional

Probab=99.91  E-value=1.6e-23  Score=158.96  Aligned_cols=150  Identities=11%  Similarity=0.082  Sum_probs=114.1

Q ss_pred             ChHHHHHHHc-----CChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCC
Q 048100            2 NSDLYEAAAK-----GVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNA   76 (161)
Q Consensus         2 ~~~l~~A~~~-----g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~   76 (161)
                      .||||.|+..     +..+.++.|++.|.+++.+|..|.||||+|+..+..+       ..+++++|+++|++ ++..+.
T Consensus        72 ~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~-------~~~iv~~Ll~~Gad-vn~~d~  143 (489)
T PHA02798         72 STPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYIN-------NLEILLFMIENGAD-TTLLDK  143 (489)
T ss_pred             CChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcC-------hHHHHHHHHHcCCC-ccccCC
Confidence            4788887753     6678888888888888888888999999865433322       37888999988887 467788


Q ss_pred             CCCcHHHHHHHhCC---HHHHHHHHHhhhcCCchhhhc---------------CchhHHHHH------------------
Q 048100           77 KGDSPLHVAARYGH---AAVVGALIEFAEKQPGQELES---------------GVKSTTRYM------------------  120 (161)
Q Consensus        77 ~~~t~l~~a~~~~~---~~~~~~Ll~~g~~~~~~~~~~---------------~~~~~~~~l------------------  120 (161)
                      .|.||||+|++.++   .+++++|++.|++.+......               +..++++++                  
T Consensus       144 ~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~  223 (489)
T PHA02798        144 DGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKF  223 (489)
T ss_pred             CCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchH
Confidence            88999999888887   888888888887764331111               112222222                  


Q ss_pred             ---------------------------hhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCcC
Q 048100          121 ---------------------------LGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       121 ---------------------------~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                                                 ++.+|..|+||||+|+..|+.+++++|++.|+|++..+.
T Consensus       224 ~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~  289 (489)
T PHA02798        224 MEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITE  289 (489)
T ss_pred             HHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCC
Confidence                                       245778899999999999999999999999999987664

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.91  E-value=3.7e-24  Score=159.33  Aligned_cols=146  Identities=23%  Similarity=0.268  Sum_probs=113.0

Q ss_pred             hHHHHHHHcCChHHHHHHHhhhCcccccc-CCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            3 SDLYEAAAKGVIEPFNQLAIDRQLGSLVI-HKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      +.||+|+..++++.+++|++++.++|..+ ..+.|||||   |++.|+       ..++++|+++|++ +...|.+|.+|
T Consensus        80 tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHW---Aar~G~-------~~vv~lLlqhGAd-pt~~D~~G~~~  148 (600)
T KOG0509|consen   80 TLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHW---AARNGH-------ISVVDLLLQHGAD-PTLKDKQGLTP  148 (600)
T ss_pred             cceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchH---HHHcCc-------HHHHHHHHHcCCC-CceecCCCCcH
Confidence            57888888888888888888888888777 667888888   556664       7788888888887 46778888888


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchh-----------HHHHHh------hccC-CCCCcHhHHHHHcCCHHH
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQELESGVKS-----------TTRYML------GMKN-DEEDTALHEAVQSGSLDV  143 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~-----------~~~~l~------~~~~-~~g~t~l~~a~~~~~~~~  143 (161)
                      +|.|+++|+...+-+|+.+|++++.. +..|+++           .++.|+      ..+| ..|.||||||+..|+.++
T Consensus       149 lHla~~~~~~~~vayll~~~~d~d~~-D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~  227 (600)
T KOG0509|consen  149 LHLAAQFGHTALVAYLLSKGADIDLR-DNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTA  227 (600)
T ss_pred             HHHHHHhCchHHHHHHHHhcccCCCc-CCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcce
Confidence            88888888888888888888776666 4444443           244443      4555 999999999999999999


Q ss_pred             HHHHHhCCCCCCCCcCC
Q 048100          144 VEILLGADPAFPYSANG  160 (161)
Q Consensus       144 ~~~Ll~~~~~~~~~~~~  160 (161)
                      +++|++.|.+.+-.+.+
T Consensus       228 v~Ll~~g~~~~d~~~~~  244 (600)
T KOG0509|consen  228 VKLLLEGGADLDKTNTN  244 (600)
T ss_pred             EehhhhcCCcccccccC
Confidence            99777777877655543

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.91  E-value=2.3e-23  Score=155.20  Aligned_cols=145  Identities=17%  Similarity=0.225  Sum_probs=115.4

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCcc-ccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCc
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLG-SLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDS   80 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t   80 (161)
                      .+|||.|+..|+.+.++.|++.+... +..+..|.||||+|+   ..+       ..+++++|++.|++ ++..+..|.|
T Consensus        69 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~---~~~-------~~~iv~~Ll~~gad-~~~~~~~g~t  137 (413)
T PHA02875         69 ESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLAT---ILK-------KLDIMKLLIARGAD-PDIPNTDKFS  137 (413)
T ss_pred             ccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHH---HhC-------CHHHHHHHHhCCCC-CCCCCCCCCC
Confidence            47899999999999999998777554 445677899999944   444       47899999998887 4667888899


Q ss_pred             HHHHHHHhCCHHHHHHHHHhhhcCCch----------hhhcCchhHHHHHhh------ccCCCC-CcHhHHHHHcCCHHH
Q 048100           81 PLHVAARYGHAAVVGALIEFAEKQPGQ----------ELESGVKSTTRYMLG------MKNDEE-DTALHEAVQSGSLDV  143 (161)
Q Consensus        81 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~----------~~~~~~~~~~~~l~~------~~~~~g-~t~l~~a~~~~~~~~  143 (161)
                      |||+|+..|+.+++++|+++|++.+..          +...|..+++++|++      ..+..| .||+|+|+..|+.++
T Consensus       138 pLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~i  217 (413)
T PHA02875        138 PLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDI  217 (413)
T ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHH
Confidence            999999999999999999988876544          455666777888874      345555 589999999999999


Q ss_pred             HHHHHhCCCCCCCC
Q 048100          144 VEILLGADPAFPYS  157 (161)
Q Consensus       144 ~~~Ll~~~~~~~~~  157 (161)
                      +++|++.|++++..
T Consensus       218 v~~Ll~~gad~n~~  231 (413)
T PHA02875        218 VRLFIKRGADCNIM  231 (413)
T ss_pred             HHHHHHCCcCcchH
Confidence            99999999998753

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.91  E-value=2.7e-23  Score=157.38  Aligned_cols=128  Identities=21%  Similarity=0.181  Sum_probs=107.0

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      .||||.|+..|+.+.++.|++.+..++..|..|.||||+|+   ..+       ..+++++|++.|++ ++..|..|.||
T Consensus       169 ~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~---~~~-------~~~iv~~Ll~~ga~-in~~d~~g~Tp  237 (477)
T PHA02878        169 NTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAV---KHY-------NKPIVHILLENGAS-TDARDKCGNTP  237 (477)
T ss_pred             CCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH---HhC-------CHHHHHHHHHcCCC-CCCCCCCCCCH
Confidence            58999999999999999999999999999999999999954   444       48899999999988 57789999999


Q ss_pred             HHHHHHh-CCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccC-CCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCcC
Q 048100           82 LHVAARY-GHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKN-DEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus        82 l~~a~~~-~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                      ||+|+.. ++.+++++|+++|++                 ++.++ ..|.||||+|  .++.+++++|+++|+|++..+.
T Consensus       238 Lh~A~~~~~~~~iv~~Ll~~gad-----------------vn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~  298 (477)
T PHA02878        238 LHISVGYCKDYDILKLLLEHGVD-----------------VNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNS  298 (477)
T ss_pred             HHHHHHhcCCHHHHHHHHHcCCC-----------------CCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCC
Confidence            9999976 689999999999998                 44444 3688888888  4667888888888888776544

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.90  E-value=6.8e-23  Score=139.67  Aligned_cols=117  Identities=10%  Similarity=0.125  Sum_probs=91.6

Q ss_pred             cccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHHHHHHHhC--CHHHHHHHHHhhhcCCc
Q 048100           29 LVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYG--HAAVVGALIEFAEKQPG  106 (161)
Q Consensus        29 ~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~~Ll~~g~~~~~  106 (161)
                      .....+.||||+|+   ..+       ..++++.|+...    +..+..|.||||+|+..+  +.+++++|+++|++.+.
T Consensus        16 ~~~~~~~~pL~~A~---~~~-------~~~~vk~Li~~~----n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~   81 (209)
T PHA02859         16 YLFYRYCNPLFYYV---EKD-------DIEGVKKWIKFV----NDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNF   81 (209)
T ss_pred             HHhhccCcHHHHHH---HhC-------cHHHHHHHHHhh----hccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCc
Confidence            34567899999954   444       488999999752    456889999999999854  89999999999999765


Q ss_pred             hhhhc--------------CchhHHHHHh------hccCCCCCcHhHHHHH--cCCHHHHHHHHhCCCCCCCCcC
Q 048100          107 QELES--------------GVKSTTRYML------GMKNDEEDTALHEAVQ--SGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       107 ~~~~~--------------~~~~~~~~l~------~~~~~~g~t~l~~a~~--~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                      .....              +..+++++|+      +.+|..|.||||+|+.  .++.+++++|++.|++++.++.
T Consensus        82 ~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~  156 (209)
T PHA02859         82 KTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDF  156 (209)
T ss_pred             cCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccC
Confidence            52112              2456677665      5788999999999886  4689999999999999876553

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.90  E-value=7.3e-23  Score=155.11  Aligned_cols=147  Identities=22%  Similarity=0.220  Sum_probs=128.6

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHH-----HHHHhhhcccccccccHHHHHHHHHhCccchhccCC
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHV-----NIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNA   76 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~-----a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~   76 (161)
                      .||||.|++.|+.+.|+.|++.|..++..+..+.||||+     |+..+          ..+++++|++.|+++ +..+.
T Consensus        36 ~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~----------~~~iv~~Ll~~ga~i-~~~d~  104 (480)
T PHA03100         36 VLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTD----------VKEIVKLLLEYGANV-NAPDN  104 (480)
T ss_pred             chhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhc----------hHHHHHHHHHCCCCC-CCCCC
Confidence            379999999999999999999999999999999999999     76544          589999999999985 77899


Q ss_pred             CCCcHHHHHH--HhCCHHHHHHHHHhhhcCCch----------hhhcC--chhHHHHHh------hccCCCCCcHhHHHH
Q 048100           77 KGDSPLHVAA--RYGHAAVVGALIEFAEKQPGQ----------ELESG--VKSTTRYML------GMKNDEEDTALHEAV  136 (161)
Q Consensus        77 ~~~t~l~~a~--~~~~~~~~~~Ll~~g~~~~~~----------~~~~~--~~~~~~~l~------~~~~~~g~t~l~~a~  136 (161)
                      .|.||||+|+  ..|+.+++++|++.|++....          +...+  ..+++++++      +.++..|.||||+|+
T Consensus       105 ~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~  184 (480)
T PHA03100        105 NGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAV  184 (480)
T ss_pred             CCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHH
Confidence            9999999999  999999999999999886544          35666  778888886      457789999999999


Q ss_pred             HcCCHHHHHHHHhCCCCCCCCcC
Q 048100          137 QSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       137 ~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                      ..|+.+++++|++.|++++..+.
T Consensus       185 ~~~~~~iv~~Ll~~ga~~~~~~~  207 (480)
T PHA03100        185 EKGNIDVIKFLLDNGADINAGDI  207 (480)
T ss_pred             HhCCHHHHHHHHHcCCCccCCCC
Confidence            99999999999999999886543

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.90  E-value=6e-23  Score=159.83  Aligned_cols=140  Identities=16%  Similarity=0.111  Sum_probs=116.6

Q ss_pred             ChHHHHHHHcCCh--HHHHHHHhhhCccccccCCCCcHHHHHHHHhhhccc---------------------------cc
Q 048100            2 NSDLYEAAAKGVI--EPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNK---------------------------EG   52 (161)
Q Consensus         2 ~~~l~~A~~~g~~--~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~---------------------------~~   52 (161)
                      .||||.|++.|+.  +.++.|++.|++++.++..|.||||+|+.++..++.                           ..
T Consensus       213 ~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA  292 (764)
T PHA02716        213 ITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLA  292 (764)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHH
Confidence            5899999999965  899999999999999999999999997643321110                           11


Q ss_pred             ccccHHHHHHHHHhCccchhccCCCCCcHHHHHHH--hCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCc
Q 048100           53 ESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAAR--YGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT  130 (161)
Q Consensus        53 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~--~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t  130 (161)
                      ..+..+++++|++.|++ ++..|..|+||||+|+.  .++.+++++|++.|++                 ++.+|..|+|
T Consensus       293 ~~g~leiVklLLe~GAd-IN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GAD-----------------IN~kD~~G~T  354 (764)
T PHA02716        293 RNIDISVVYSFLQPGVK-LHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGND-----------------LNEPDNIGNT  354 (764)
T ss_pred             HcCCHHHHHHHHhCCCc-eeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCC-----------------CccCCCCCCC
Confidence            23468899999999988 57789999999999864  4688999999999998                 7788999999


Q ss_pred             HhHHHHH--------------cCCHHHHHHHHhCCCCCCCCcC
Q 048100          131 ALHEAVQ--------------SGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       131 ~l~~a~~--------------~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                      |||+|+.              .++.+++++|++.|++++.+++
T Consensus       355 PLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~  397 (764)
T PHA02716        355 VLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNC  397 (764)
T ss_pred             HHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCC
Confidence            9999875              3789999999999999987654

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.90  E-value=2.7e-23  Score=158.29  Aligned_cols=133  Identities=26%  Similarity=0.248  Sum_probs=118.7

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHH-hCccchhccCCCCCc
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLE-TCPSLLLQVNAKGDS   80 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~-~~~~~~~~~~~~~~t   80 (161)
                      +||||+|++.|..+.+.-|+..|..++.++.++.||||.   |+.+|       +.+.++.|++ .+....+..|..|.|
T Consensus       274 ~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~---AA~yg-------~~ntv~rLL~~~~~rllne~D~~g~t  343 (929)
T KOG0510|consen  274 CTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHF---AAIYG-------RINTVERLLQESDTRLLNESDLHGMT  343 (929)
T ss_pred             CchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHH---HHHcc-------cHHHHHHHHhCcCccccccccccCCC
Confidence            699999999999999999999999999999999999999   45555       4889999999 676777888999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCc
Q 048100           81 PLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSA  158 (161)
Q Consensus        81 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  158 (161)
                      |||.|+++||.+++++|++.|+.....              .-.|.+|.||||+|++.|+..+|++|+..|+++..++
T Consensus       344 pLHlaa~~gH~~v~qlLl~~GA~~~~~--------------~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n  407 (929)
T KOG0510|consen  344 PLHLAAKSGHDRVVQLLLNKGALFLNM--------------SEADSDGNTALHLAAKYGNTSAVQKLISHGADIGVKN  407 (929)
T ss_pred             chhhhhhcCHHHHHHHHHhcChhhhcc--------------cccccCCchhhhHHHHhccHHHHHHHHHcCCceeecc
Confidence            999999999999999999999974321              0249999999999999999999999999999996543

>PHA02946 ankyin-like protein; Provisional

Probab=99.90  E-value=2.3e-22  Score=150.73  Aligned_cols=147  Identities=16%  Similarity=0.125  Sum_probs=102.3

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      .||||.|++.|+.+.++.|++.+.+++.+|..|.||||+|+   ..++     +..+++++|+++|+++....+..|.||
T Consensus        73 ~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~---~~~~-----~~~e~v~lLl~~Gadin~~~d~~g~tp  144 (446)
T PHA02946         73 NYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLS---GTDD-----EVIERINLLVQYGAKINNSVDEEGCGP  144 (446)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHH---HcCC-----chHHHHHHHHHcCCCcccccCCCCCcH
Confidence            47888888888888888888888888888888888888843   2221     136778888887777543457777788


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCchhhhcCc-------------hhHHHHHh------hccCCCCCcHhHHHHHcC--C
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQELESGV-------------KSTTRYML------GMKNDEEDTALHEAVQSG--S  140 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~-------------~~~~~~l~------~~~~~~g~t~l~~a~~~~--~  140 (161)
                      || |+..++.+++++|++.|++.... +..|.             .+++++++      +.+|..|+||||+|+..+  +
T Consensus       145 L~-aa~~~~~~vv~~Ll~~gad~~~~-d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~  222 (446)
T PHA02946        145 LL-ACTDPSERVFKKIMSIGFEARIV-DKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKN  222 (446)
T ss_pred             HH-HHHCCChHHHHHHHhcccccccc-CCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCc
Confidence            86 55567777788888777765544 22222             34555554      356778888888888765  7


Q ss_pred             HHHHHHHHhCCCCCCCCcC
Q 048100          141 LDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       141 ~~~~~~Ll~~~~~~~~~~~  159 (161)
                      .+++++|+. |++++.++.
T Consensus       223 ~~iv~lLl~-gadin~~d~  240 (446)
T PHA02946        223 VDIINLLLP-STDVNKQNK  240 (446)
T ss_pred             HHHHHHHHc-CCCCCCCCC
Confidence            788888774 677765543

>PHA02741 hypothetical protein; Provisional

Probab=99.90  E-value=1e-22  Score=134.58  Aligned_cols=128  Identities=14%  Similarity=0.191  Sum_probs=106.9

Q ss_pred             ChHHHHHHHcCChHHHHHHHh------hhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccC
Q 048100            2 NSDLYEAAAKGVIEPFNQLAI------DRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVN   75 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~------~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~   75 (161)
                      .|+||.|++.|+.+.++.|+.      .+...+.+|..|.||||+|   +..++..   ...+++++|++.+++ ++.++
T Consensus        22 ~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A---~~~g~~~---~~~~ii~~Ll~~gad-in~~~   94 (169)
T PHA02741         22 ENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIA---AEKHEAQ---LAAEIIDHLIELGAD-INAQE   94 (169)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHH---HHcCChH---HHHHHHHHHHHcCCC-CCCCC
Confidence            589999999999999998853      2466788999999999995   4444310   015899999999988 46656


Q ss_pred             -CCCCcHHHHHHHhCCHHHHHHHHH-hhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCC
Q 048100           76 -AKGDSPLHVAARYGHAAVVGALIE-FAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPA  153 (161)
Q Consensus        76 -~~~~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~  153 (161)
                       ..|+||||+|+..++.+++++|+. .|++                 ++.+|..|+||||+|+..++.+++++|+++++.
T Consensus        95 ~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~-----------------~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         95 MLEGDTALHLAAHRRDHDLAEWLCCQPGID-----------------LHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-----------------CCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence             489999999999999999999997 5877                 777899999999999999999999999976543

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.90  E-value=1.9e-22  Score=153.39  Aligned_cols=38  Identities=11%  Similarity=0.081  Sum_probs=34.4

Q ss_pred             hccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCcC
Q 048100          122 GMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       122 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                      +.+|..|+||||+|+..|+.+++++|++.|+|++.++.
T Consensus       250 n~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~  287 (494)
T PHA02989        250 NKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSK  287 (494)
T ss_pred             CCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCC
Confidence            56778899999999999999999999999999987754

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.89  E-value=6.7e-23  Score=133.60  Aligned_cols=129  Identities=14%  Similarity=0.113  Sum_probs=102.1

Q ss_pred             ChHHHHHHHcCChHHHHHHHhh-----hCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccC-
Q 048100            2 NSDLYEAAAKGVIEPFNQLAID-----RQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVN-   75 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~-----~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~-   75 (161)
                      .||||+|++.|+++.+......     +.....+|..|.||||+|+   ..++..    ..+++++|++.|++ ++..+ 
T Consensus        18 ~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~---~~~~~~----~~e~v~~Ll~~gad-in~~~~   89 (154)
T PHA02736         18 ENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVS---NPDKAD----PQEKLKLLMEWGAD-INGKER   89 (154)
T ss_pred             CCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeec---ccCchh----HHHHHHHHHHcCCC-ccccCC
Confidence            5899999999985433222111     1223456889999999954   444311    24689999999987 45666 


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHH-hhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCC
Q 048100           76 AKGDSPLHVAARYGHAAVVGALIE-FAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAF  154 (161)
Q Consensus        76 ~~~~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~  154 (161)
                      ..|+||||+|+..++.+++++|+. .|.+                 ++.+|..|.||||+|+..|+.+++++|+..|+++
T Consensus        90 ~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d-----------------~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         90 VFGNTPLHIAVYTQNYELATWLCNQPGVN-----------------MEILNYAFKTPYYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCC-----------------CccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            589999999999999999999997 4777                 7778999999999999999999999999999887


Q ss_pred             C
Q 048100          155 P  155 (161)
Q Consensus       155 ~  155 (161)
                      .
T Consensus       153 ~  153 (154)
T PHA02736        153 K  153 (154)
T ss_pred             C
Confidence            5

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.88  E-value=1.2e-21  Score=154.13  Aligned_cols=103  Identities=20%  Similarity=0.296  Sum_probs=84.4

Q ss_pred             cHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchh----------hh-cCchhHHHHHh---
Q 048100           56 STKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQE----------LE-SGVKSTTRYML---  121 (161)
Q Consensus        56 ~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~----------~~-~~~~~~~~~l~---  121 (161)
                      ..+++++|++.|++ ++..|..|.||||+|+..++.+++++|+++|++.....          .. .+...++++|+   
T Consensus       354 ~~~iv~lLl~~gad-in~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~g  432 (682)
T PHA02876        354 NKDIVITLLELGAN-VNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRG  432 (682)
T ss_pred             cHHHHHHHHHcCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCC
Confidence            47788899998887 57789999999999999999999999999999876541          11 22233456664   


Q ss_pred             ---hccCCCCCcHhHHHHHcC-CHHHHHHHHhCCCCCCCCcC
Q 048100          122 ---GMKNDEEDTALHEAVQSG-SLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       122 ---~~~~~~g~t~l~~a~~~~-~~~~~~~Ll~~~~~~~~~~~  159 (161)
                         +.+|..|+||||+|+..+ +.+++++|++.|++++..+.
T Consensus       433 adin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~  474 (682)
T PHA02876        433 ANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINI  474 (682)
T ss_pred             CCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCC
Confidence               578999999999999976 78999999999999987654

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.88  E-value=1.8e-21  Score=137.90  Aligned_cols=120  Identities=9%  Similarity=0.081  Sum_probs=104.2

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCcccccc----CCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhc-cCC
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVI----HKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQ-VNA   76 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~----~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~-~~~   76 (161)
                      .++|+.|+..|+.+.++.|++.|.+++.++    ..|.||||+|   +..+       ..+++++|+++|+++ +. .+.
T Consensus        34 ~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~A---a~~~-------~~eivklLL~~GADV-N~~~~~  102 (300)
T PHA02884         34 ANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYA---IDCD-------NDDAAKLLIRYGADV-NRYAEE  102 (300)
T ss_pred             CHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHH---HHcC-------CHHHHHHHHHcCCCc-CcccCC
Confidence            578999999999999999999999998874    5899999994   4555       489999999999984 54 356


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHh
Q 048100           77 KGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLG  149 (161)
Q Consensus        77 ~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  149 (161)
                      .|.||||+|+..++.+++++|++.|++                 ++.+|..|.||||+|+..++..++..+.+
T Consensus       103 ~g~TpLh~Aa~~~~~eivklLL~~GAd-----------------in~kd~~G~TpL~~A~~~~~~~~~~~~~~  158 (300)
T PHA02884        103 AKITPLYISVLHGCLKCLEILLSYGAD-----------------INIQTNDMVTPIELALMICNNFLAFMICD  158 (300)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCC-----------------CCCCCCCCCCHHHHHHHhCChhHHHHhcC
Confidence            799999999999999999999999999                 77889999999999999887777655543

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.88  E-value=1.4e-22  Score=146.71  Aligned_cols=136  Identities=23%  Similarity=0.250  Sum_probs=105.3

Q ss_pred             hHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHH
Q 048100            3 SDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPL   82 (161)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (161)
                      +||+.|+..|+++.||.|++.+...|.......|||-.   ||+-|+       .+++++|++++++ ++..|..|.|.|
T Consensus        86 ppLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLra---ACfDG~-------leivKyLvE~gad-~~IanrhGhTcL  154 (615)
T KOG0508|consen   86 PPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRA---ACFDGH-------LEIVKYLVEHGAD-PEIANRHGHTCL  154 (615)
T ss_pred             chhhHHhccCcHHHHHHHHHhcCccccccccCCccHHH---HHhcch-------hHHHHHHHHcCCC-CcccccCCCeeE
Confidence            67888888888888888888888888777788888888   666664       8888888888887 577788888888


Q ss_pred             HHHHHhCCHHHHHHHHHhhhcCCch----------hhhcCchhHHHHHhh-----ccCCCCCcHhHHHHHcCCHHHHHHH
Q 048100           83 HVAARYGHAAVVGALIEFAEKQPGQ----------ELESGVKSTTRYMLG-----MKNDEEDTALHEAVQSGSLDVVEIL  147 (161)
Q Consensus        83 ~~a~~~~~~~~~~~Ll~~g~~~~~~----------~~~~~~~~~~~~l~~-----~~~~~g~t~l~~a~~~~~~~~~~~L  147 (161)
                      |+||..|+.+++++|++.|++.++.          +++.|..+++++|+.     .+|..|.|||..|+..|+.++|++|
T Consensus       155 mIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~d~~GmtPL~~Aa~tG~~~iVe~L  234 (615)
T KOG0508|consen  155 MIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDVDGHGMTPLLLAAVTGHTDIVERL  234 (615)
T ss_pred             EeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeeecCCCCchHHHHhhhcchHHHHHH
Confidence            8888888888888888888886655          345555666666653     3556677777777777777777777


Q ss_pred             Hh
Q 048100          148 LG  149 (161)
Q Consensus       148 l~  149 (161)
                      +.
T Consensus       235 ~~  236 (615)
T KOG0508|consen  235 LQ  236 (615)
T ss_pred             hc
Confidence            75

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.88  E-value=2.3e-22  Score=141.51  Aligned_cols=130  Identities=18%  Similarity=0.218  Sum_probs=105.3

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhh-CccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCc
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDR-QLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDS   80 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t   80 (161)
                      ||+||+++.+++++.|+.||+.+ .+.+..+..|+||+++++.+..-..     ....+|..|+..|.. .-...+.|.|
T Consensus       269 NTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~-----~d~~vV~~LF~mgnV-NaKAsQ~gQT  342 (452)
T KOG0514|consen  269 NTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQP-----ADRTVVERLFKMGDV-NAKASQHGQT  342 (452)
T ss_pred             CeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcch-----hhHHHHHHHHhccCc-chhhhhhcch
Confidence            79999999999999999999876 5678899999999999877653322     157899999998753 3445788999


Q ss_pred             HHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHh-CCCCC
Q 048100           81 PLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLG-ADPAF  154 (161)
Q Consensus        81 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~~~~~  154 (161)
                      +|++|+..|+.++++.|+.+|++                 ++.+|.+|.|+|++|+++||.+++++||. .+.|+
T Consensus       343 ALMLAVSHGr~d~vk~LLacgAd-----------------VNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~  400 (452)
T KOG0514|consen  343 ALMLAVSHGRVDMVKALLACGAD-----------------VNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDI  400 (452)
T ss_pred             hhhhhhhcCcHHHHHHHHHccCC-----------------CccccCCccHHHhhhhhhChHHHHHHHhccCcccc
Confidence            99999999999999999999999                 66667777777777777777777777772 34443

>PHA02946 ankyin-like protein; Provisional

Probab=99.87  E-value=4.1e-21  Score=144.06  Aligned_cols=146  Identities=10%  Similarity=0.074  Sum_probs=119.7

Q ss_pred             hHHHHHH--HcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCc
Q 048100            3 SDLYEAA--AKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDS   80 (161)
Q Consensus         3 ~~l~~A~--~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t   80 (161)
                      ++||.++  ..++.+.++.|+..+.+++.+|..|.||||+   |+..+       ..+++++|+++|++ ++.+|..|.|
T Consensus        39 ~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~---Aa~~g-------~~eiv~lLL~~GAd-in~~d~~g~T  107 (446)
T PHA02946         39 HILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHI---ASKIN-------NNRIVAMLLTHGAD-PNACDKQHKT  107 (446)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHH---HHHcC-------CHHHHHHHHHCcCC-CCCCCCCCCC
Confidence            4677665  3456789999999999999999999999999   45555       48999999999988 5788999999


Q ss_pred             HHHHHHHhCC--HHHHHHHHHhhhcCCch----------hhhcCchhHHHHHh------hccCCCCCcHhHHHHHcC--C
Q 048100           81 PLHVAARYGH--AAVVGALIEFAEKQPGQ----------ELESGVKSTTRYML------GMKNDEEDTALHEAVQSG--S  140 (161)
Q Consensus        81 ~l~~a~~~~~--~~~~~~Ll~~g~~~~~~----------~~~~~~~~~~~~l~------~~~~~~g~t~l~~a~~~~--~  140 (161)
                      |||+|+..++  .+++++|+++|++.+..          ++..+..+++++++      +.+|..|+||||+|+..+  +
T Consensus       108 pLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~  187 (446)
T PHA02946        108 PLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPK  187 (446)
T ss_pred             HHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHHHHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCC
Confidence            9999988664  78999999999987643          23345566777776      568899999999988754  5


Q ss_pred             HHHHHHHHhCCCCCCCCcC
Q 048100          141 LDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       141 ~~~~~~Ll~~~~~~~~~~~  159 (161)
                      .+++++|++.|++++.+++
T Consensus       188 ~~~v~~Ll~~Gadin~~d~  206 (446)
T PHA02946        188 ASTISWMMKLGISPSKPDH  206 (446)
T ss_pred             HHHHHHHHHcCCCCcccCC
Confidence            7899999999999987654

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.87  E-value=2.8e-21  Score=150.62  Aligned_cols=149  Identities=16%  Similarity=0.087  Sum_probs=120.1

Q ss_pred             ChHHHHHHHc--CChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCC
Q 048100            2 NSDLYEAAAK--GVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGD   79 (161)
Q Consensus         2 ~~~l~~A~~~--g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~   79 (161)
                      .||||.|+..  ++.+.++.|++.+.+++..|..|.||||+|+   ..|+.     ..+++++|++.|++ ++.++..|+
T Consensus       178 ~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa---~~g~~-----~~eIVklLLe~GAD-VN~kD~~G~  248 (764)
T PHA02716        178 YGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYL---ITGNV-----CASVIKKIIELGGD-MDMKCVNGM  248 (764)
T ss_pred             CcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH---HcCCC-----CHHHHHHHHHcCCC-CCCCCCCCC
Confidence            4899988754  6789999999999999999999999999954   44431     25899999999998 577899999


Q ss_pred             cHHHHHH---HhCCHHHHHHHHHhhhcCCch-----------hhhcCchhHHHHHh------hccCCCCCcHhHHHHH--
Q 048100           80 SPLHVAA---RYGHAAVVGALIEFAEKQPGQ-----------ELESGVKSTTRYML------GMKNDEEDTALHEAVQ--  137 (161)
Q Consensus        80 t~l~~a~---~~~~~~~~~~Ll~~g~~~~~~-----------~~~~~~~~~~~~l~------~~~~~~g~t~l~~a~~--  137 (161)
                      ||||+|+   ..++.++++.|++.+......           +...|..+++++|+      +.+|..|+||||+|+.  
T Consensus       249 TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~  328 (764)
T PHA02716        249 SPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRH  328 (764)
T ss_pred             CHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHh
Confidence            9999885   467889999888764332111           34567788888886      5688999999999764  


Q ss_pred             cCCHHHHHHHHhCCCCCCCCcC
Q 048100          138 SGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       138 ~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                      .++.+++++|++.|++++.+++
T Consensus       329 ~~~~eIVklLLe~GADIN~kD~  350 (764)
T PHA02716        329 NISTDIIKLLHEYGNDLNEPDN  350 (764)
T ss_pred             CCCchHHHHHHHcCCCCccCCC
Confidence            4689999999999999987664

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.87  E-value=3.5e-21  Score=146.47  Aligned_cols=150  Identities=13%  Similarity=0.012  Sum_probs=95.2

Q ss_pred             hHHHHHHHc--CChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCc
Q 048100            3 SDLYEAAAK--GVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDS   80 (161)
Q Consensus         3 ~~l~~A~~~--g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t   80 (161)
                      |+++.++..  ++.+.++.|++.|++++..+ .+.||||+|+..+...    ..+..+++++|+++|++ ++..+..|.|
T Consensus        37 t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~----~~~~~~iv~~Ll~~Gad-in~~d~~g~t  110 (494)
T PHA02989         37 SILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREIT----SNKIKKIVKLLLKFGAD-INLKTFNGVS  110 (494)
T ss_pred             CHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcc----hhhHHHHHHHHHHCCCC-CCCCCCCCCc
Confidence            455544433  25677777777777777655 4577777743322111    11246677777777776 4666777777


Q ss_pred             HHHHHHHh---CCHHHHHHHHHhhhcC-Cch----------h--hhcCchhHHHHHhh------c-cCCCCCcHhHHHHH
Q 048100           81 PLHVAARY---GHAAVVGALIEFAEKQ-PGQ----------E--LESGVKSTTRYMLG------M-KNDEEDTALHEAVQ  137 (161)
Q Consensus        81 ~l~~a~~~---~~~~~~~~Ll~~g~~~-~~~----------~--~~~~~~~~~~~l~~------~-~~~~g~t~l~~a~~  137 (161)
                      |||.|+..   ++.+++++|+++|++. ...          +  ...++.+++++|++      . .+..|.||||+|+.
T Consensus       111 pL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~  190 (494)
T PHA02989        111 PIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLR  190 (494)
T ss_pred             HHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHh
Confidence            77766544   4567777777777776 222          0  11233445555542      2 56789999998877


Q ss_pred             cC----CHHHHHHHHhCCCCCCCCc
Q 048100          138 SG----SLDVVEILLGADPAFPYSA  158 (161)
Q Consensus       138 ~~----~~~~~~~Ll~~~~~~~~~~  158 (161)
                      .+    +.+++++|++.|++++..+
T Consensus       191 ~~~~~~~~~iv~~Ll~~Ga~vn~~~  215 (494)
T PHA02989        191 NDIDVISIKVIKYLIKKGVNIETNN  215 (494)
T ss_pred             cccccccHHHHHHHHhCCCCccccC
Confidence            54    8899999999999887655

>PHA02795 ankyrin-like protein; Provisional

Probab=99.87  E-value=2.7e-21  Score=142.27  Aligned_cols=137  Identities=18%  Similarity=0.101  Sum_probs=105.3

Q ss_pred             ChHHHHHHH--cCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhh---------hccc--------------------
Q 048100            2 NSDLYEAAA--KGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASY---------TQNK--------------------   50 (161)
Q Consensus         2 ~~~l~~A~~--~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~---------~~~~--------------------   50 (161)
                      .|+||.|+.  .|+.+.++.|+.+|++++..  .+.||+|+|+..+.         .|-.                    
T Consensus       117 ~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~  194 (437)
T PHA02795        117 QDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFL  194 (437)
T ss_pred             cHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHH
Confidence            478888888  78888888888888888763  44788888553210         0100                    


Q ss_pred             ccccccHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCc
Q 048100           51 EGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT  130 (161)
Q Consensus        51 ~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t  130 (161)
                      ..+.+..+++++|+++|++ ++..+..|.||||+|+..|+.+++++|+++|++                 ++.+|..|+|
T Consensus       195 a~~~~~~eIve~LIs~GAD-IN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAd-----------------IN~~d~~G~T  256 (437)
T PHA02795        195 VDEPTVLEIYKLCIPYIED-INQLDAGGRTLLYRAIYAGYIDLVSWLLENGAN-----------------VNAVMSNGYT  256 (437)
T ss_pred             HHhcCHHHHHHHHHhCcCC-cCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-----------------CCCcCCCCCC
Confidence            0011246788888888877 467788888888888888888888888888888                 7788999999


Q ss_pred             HhHHHHHcC--------CHHHHHHHHhCCCCCCCCc
Q 048100          131 ALHEAVQSG--------SLDVVEILLGADPAFPYSA  158 (161)
Q Consensus       131 ~l~~a~~~~--------~~~~~~~Ll~~~~~~~~~~  158 (161)
                      |||+|+..|        +.+++++|++.|++++...
T Consensus       257 pLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~  292 (437)
T PHA02795        257 CLDVAVDRGSVIARRETHLKILEILLREPLSIDCIK  292 (437)
T ss_pred             HHHHHHHcCCcccccccHHHHHHHHHhCCCCCCchh
Confidence            999999998        4799999999999987643

>PHA03095 ankyrin-like protein; Provisional

Probab=99.87  E-value=2.5e-21  Score=146.43  Aligned_cols=127  Identities=19%  Similarity=0.139  Sum_probs=70.7

Q ss_pred             hHHHHHHHc--CChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCc
Q 048100            3 SDLYEAAAK--GVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDS   80 (161)
Q Consensus         3 ~~l~~A~~~--g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t   80 (161)
                      |+||.|+..  ++.+.++.|+..+..++.+|..|.||||+|+   ..++.     ...+++.|+..|.+ ++..|..|+|
T Consensus       189 t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa---~~~~~-----~~~~v~~ll~~g~d-in~~d~~g~T  259 (471)
T PHA03095        189 SLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMA---TGSSC-----KRSLVLPLLIAGIS-INARNRYGQT  259 (471)
T ss_pred             CHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH---hcCCc-----hHHHHHHHHHcCCC-CCCcCCCCCC
Confidence            344444432  3344444444444444444445555555522   22211     12345555555544 3444555555


Q ss_pred             HHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCC
Q 048100           81 PLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFP  155 (161)
Q Consensus        81 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~  155 (161)
                      |||+|+..|+.+++++|++.|++                 ++.+|..|+||||+|+..|+.+++++|++.+++++
T Consensus       260 pLh~A~~~~~~~~v~~LL~~gad-----------------~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~~  317 (471)
T PHA03095        260 PLHYAAVFNNPRACRRLIALGAD-----------------INAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSAE  317 (471)
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCC-----------------CcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCHH
Confidence            55555555555555555555555                 56677778888888888888888888887777653

>PHA03095 ankyrin-like protein; Provisional

Probab=99.87  E-value=4.9e-21  Score=144.84  Aligned_cols=146  Identities=16%  Similarity=0.117  Sum_probs=99.6

Q ss_pred             ChHHHHHHHcC---ChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCC
Q 048100            2 NSDLYEAAAKG---VIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKG   78 (161)
Q Consensus         2 ~~~l~~A~~~g---~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~   78 (161)
                      .||||.|+..+   +.+.++.|++.+.+++.++..|.||||+|   +..++      ..+++++|+++|++ ++..+..|
T Consensus        48 ~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A---~~~~~------~~~iv~lLl~~ga~-in~~~~~g  117 (471)
T PHA03095         48 KTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLY---LYNAT------TLDVIKLLIKAGAD-VNAKDKVG  117 (471)
T ss_pred             CCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHH---HHcCC------cHHHHHHHHHcCCC-CCCCCCCC
Confidence            47788888877   77888888888888887788888888884   33332      26788888888776 46667778


Q ss_pred             CcHHHHHH--HhCCHHHHHHHHHhhhcCCchhhhcCc-------------hhHHHHHhh------ccCCCCCcHhHHHHH
Q 048100           79 DSPLHVAA--RYGHAAVVGALIEFAEKQPGQELESGV-------------KSTTRYMLG------MKNDEEDTALHEAVQ  137 (161)
Q Consensus        79 ~t~l~~a~--~~~~~~~~~~Ll~~g~~~~~~~~~~~~-------------~~~~~~l~~------~~~~~g~t~l~~a~~  137 (161)
                      .||||+|+  ..++.+++++|++.|++.... ...|.             .++++++++      ..+..|+||||+++.
T Consensus       118 ~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~-d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~  196 (471)
T PHA03095        118 RTPLHVYLSGFNINPKVIRLLLRKGADVNAL-DLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQ  196 (471)
T ss_pred             CCHHHHHhhCCcCCHHHHHHHHHcCCCCCcc-CCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            88888887  455677888888888775543 22222             234555542      245667777777665


Q ss_pred             c--CCHHHHHHHHhCCCCCCCCc
Q 048100          138 S--GSLDVVEILLGADPAFPYSA  158 (161)
Q Consensus       138 ~--~~~~~~~~Ll~~~~~~~~~~  158 (161)
                      .  +..+++++|++.|++++.++
T Consensus       197 ~~~~~~~i~~~Ll~~g~~~~~~d  219 (471)
T PHA03095        197 SFKPRARIVRELIRAGCDPAATD  219 (471)
T ss_pred             HCCCcHHHHHHHHHcCCCCcccC
Confidence            4  56777777777777766554

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.86  E-value=9.4e-22  Score=142.53  Aligned_cols=109  Identities=19%  Similarity=0.247  Sum_probs=99.7

Q ss_pred             hHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHH
Q 048100            3 SDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPL   82 (161)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (161)
                      |||..||..|+++.+|+|++++.++++.|..|.|.||+   +|+-|+       .+|+++|++.|++ ++.++..|+|+|
T Consensus       119 tPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmI---a~ykGh-------~~I~qyLle~gAD-vn~ks~kGNTAL  187 (615)
T KOG0508|consen  119 TPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMI---ACYKGH-------VDIAQYLLEQGAD-VNAKSYKGNTAL  187 (615)
T ss_pred             ccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEe---eeccCc-------hHHHHHHHHhCCC-cchhcccCchHH
Confidence            89999999999999999999999999999999999999   788875       8999999999999 588899999999


Q ss_pred             HHHHHhCCHHHHHHHHHhhhcCCch---------hhhcCchhHHHHHhh
Q 048100           83 HVAARYGHAAVVGALIEFAEKQPGQ---------ELESGVKSTTRYMLG  122 (161)
Q Consensus        83 ~~a~~~~~~~~~~~Ll~~g~~~~~~---------~~~~~~~~~~~~l~~  122 (161)
                      |.++.+|+.+++++|+.+|+.....         +...|+.++++.|++
T Consensus       188 H~caEsG~vdivq~Ll~~ga~i~~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  188 HDCAESGSVDIVQLLLKHGAKIDVDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             HhhhhcccHHHHHHHHhCCceeeecCCCCchHHHHhhhcchHHHHHHhc
Confidence            9999999999999999998775444         567788888888886

>PHA02798 ankyrin-like protein; Provisional

Probab=99.85  E-value=1.6e-20  Score=142.71  Aligned_cols=131  Identities=14%  Similarity=0.148  Sum_probs=109.4

Q ss_pred             hHHHHHHH--cCChHHHHHHHhhhCccccccCCCCcHHHHHHHHh--hhcccccccccHHHHHHHHHhCccchhccCCCC
Q 048100            3 SDLYEAAA--KGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIAS--YTQNKEGESVSTKFVELVLETCPSLLLQVNAKG   78 (161)
Q Consensus         3 ~~l~~A~~--~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~--~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~   78 (161)
                      |+++.+..  .++.+.++.|++.|.+++.++..|.||||+++...  +.+       ..+++++|+++|++ ++..+..|
T Consensus        38 ~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~-------~~~iv~~Ll~~Gad-iN~~d~~G  109 (489)
T PHA02798         38 SIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKH-------MLDIVKILIENGAD-INKKNSDG  109 (489)
T ss_pred             hHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHh-------HHHHHHHHHHCCCC-CCCCCCCc
Confidence            44544444  35789999999999999999999999999965321  112       47999999999998 67889999


Q ss_pred             CcHHHHHHHhC---CHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCC---HHHHHHHHhCCC
Q 048100           79 DSPLHVAARYG---HAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGS---LDVVEILLGADP  152 (161)
Q Consensus        79 ~t~l~~a~~~~---~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~---~~~~~~Ll~~~~  152 (161)
                      .||||+|+..+   +.+++++|+++|++                 ++.+|..|.||||+|+..++   .+++++|++.|+
T Consensus       110 ~TpLh~a~~~~~~~~~~iv~~Ll~~Gad-----------------vn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~ga  172 (489)
T PHA02798        110 ETPLYCLLSNGYINNLEILLFMIENGAD-----------------TTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGV  172 (489)
T ss_pred             CcHHHHHHHcCCcChHHHHHHHHHcCCC-----------------ccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCC
Confidence            99999999876   78999999999999                 77788899999999998887   899999999898


Q ss_pred             CCCCCc
Q 048100          153 AFPYSA  158 (161)
Q Consensus       153 ~~~~~~  158 (161)
                      +++..+
T Consensus       173 din~~~  178 (489)
T PHA02798        173 DINTHN  178 (489)
T ss_pred             Cccccc
Confidence            887654

>PHA02795 ankyrin-like protein; Provisional

Probab=99.85  E-value=1.9e-20  Score=137.85  Aligned_cols=119  Identities=13%  Similarity=0.135  Sum_probs=97.1

Q ss_pred             ccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCch--
Q 048100           30 VIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQ--  107 (161)
Q Consensus        30 ~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~--  107 (161)
                      ++..++|+||+++..+. +       ..+++++|+++|+++ +.  .++.||+|.|+..++.+++++|+.+|++....  
T Consensus       112 ~~~~~~~~L~~~~~n~~-n-------~~eiV~~LI~~GADI-n~--~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~  180 (437)
T PHA02795        112 NCNSVQDLLLYYLSNAY-V-------EIDIVDFMVDHGAVI-YK--IECLNAYFRGICKKESSVVEFILNCGIPDENDVK  180 (437)
T ss_pred             ccccccHHHHHHHHhcC-C-------CHHHHHHHHHCCCCC-CC--CCCCCHHHHHHHcCcHHHHHHHHhcCCccccccc
Confidence            66779999999654332 4       499999999999985 33  45689999999999999999999999753222  


Q ss_pred             --------------hhhcCchhHHHHHh------hccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCcC
Q 048100          108 --------------ELESGVKSTTRYML------GMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       108 --------------~~~~~~~~~~~~l~------~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                                    +.+.+..+++++|+      +.+|..|.||||+|+..|+.+++++|++.|++++.++.
T Consensus       181 ~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~  252 (437)
T PHA02795        181 LDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMS  252 (437)
T ss_pred             chhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence                          12344567888886      57889999999999999999999999999999987664

>PHA02917 ankyrin-like protein; Provisional

Probab=99.85  E-value=1.7e-20  Score=146.02  Aligned_cols=152  Identities=13%  Similarity=-0.003  Sum_probs=110.7

Q ss_pred             ChHHHHHHHc---CChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhh--------------cc-----------cccc
Q 048100            2 NSDLYEAAAK---GVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYT--------------QN-----------KEGE   53 (161)
Q Consensus         2 ~~~l~~A~~~---g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~--------------~~-----------~~~~   53 (161)
                      +||||.|+..   |+.+.++.|++.+.+++..+..|.||||+|+..+..              +.           .+..
T Consensus        33 ~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~  112 (661)
T PHA02917         33 NNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKSK  112 (661)
T ss_pred             CcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHhh
Confidence            5899998665   889999999999999999999999999997653320              10           1223


Q ss_pred             cccHHHHHHHHHhCccchhccCCCCCcHHHHH--HHhCCHHHHHHHHHhhhcCCchh--hhcCchhHHHHHhhccCCCCC
Q 048100           54 SVSTKFVELVLETCPSLLLQVNAKGDSPLHVA--ARYGHAAVVGALIEFAEKQPGQE--LESGVKSTTRYMLGMKNDEED  129 (161)
Q Consensus        54 ~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a--~~~~~~~~~~~Ll~~g~~~~~~~--~~~~~~~~~~~l~~~~~~~g~  129 (161)
                      .+..+++++|+++|++ ++..|..|.||||.+  +..|+.+++++|+++|++++...  ...|+.-     .......+.
T Consensus       113 ~~~~e~vk~Ll~~Gad-in~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~-----~~~~~~~~~  186 (661)
T PHA02917        113 NVDVDLIKVLVEHGFD-LSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAY-----DDYQPRNCG  186 (661)
T ss_pred             cCCHHHHHHHHHcCCC-CCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccc-----ccccccccc
Confidence            4467889999998887 577788899999854  35678999999999998843220  0111100     011123346


Q ss_pred             cHhHHHHH-----------cCCHHHHHHHHhCCCCCCCCcC
Q 048100          130 TALHEAVQ-----------SGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       130 t~l~~a~~-----------~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                      ||||+|+.           .++.+++++|++.|++++..+.
T Consensus       187 t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~  227 (661)
T PHA02917        187 TVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDK  227 (661)
T ss_pred             cHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCC
Confidence            99999986           4689999999999999998754

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.85  E-value=9.2e-21  Score=144.71  Aligned_cols=143  Identities=24%  Similarity=0.275  Sum_probs=105.5

Q ss_pred             hHHHHHHHcCChHHHHHHHh-----hhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccc-------
Q 048100            3 SDLYEAAAKGVIEPFNQLAI-----DRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSL-------   70 (161)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~-----~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~-------   70 (161)
                      +|+|+|++.|..++.+.++.     ....++..+..|.||||.|          ++.++.++++..++.+..+       
T Consensus       189 ~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlA----------ve~g~~e~lk~~L~n~~~~a~~~~~~  258 (929)
T KOG0510|consen  189 FPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLA----------VEGGDIEMLKMCLQNGKKIADVQLDA  258 (929)
T ss_pred             chHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhh----------hhcCCHHHHHHHHhCccccchhhhHH
Confidence            34444444444444444443     2333444444455555552          2234688999999876532       


Q ss_pred             -------hhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCch----------hhhcCchhHHHHHhh--------ccC
Q 048100           71 -------LLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQ----------ELESGVKSTTRYMLG--------MKN  125 (161)
Q Consensus        71 -------~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~----------~~~~~~~~~~~~l~~--------~~~  125 (161)
                             ++..|.+|.||||+|++.|+.+++..|+..|++...+          |+.+|+..+++-|+.        ..|
T Consensus       259 ~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D  338 (929)
T KOG0510|consen  259 MQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESD  338 (929)
T ss_pred             HHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCcccccccc
Confidence                   2234889999999999999999999999999997655          678888888888864        677


Q ss_pred             CCCCcHhHHHHHcCCHHHHHHHHhCCCCCC
Q 048100          126 DEEDTALHEAVQSGSLDVVEILLGADPAFP  155 (161)
Q Consensus       126 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~  155 (161)
                      ..|+||||.|+++||..++++|+..|+...
T Consensus       339 ~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~  368 (929)
T KOG0510|consen  339 LHGMTPLHLAAKSGHDRVVQLLLNKGALFL  368 (929)
T ss_pred             ccCCCchhhhhhcCHHHHHHHHHhcChhhh
Confidence            899999999999999999999999999876

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.85  E-value=1.4e-21  Score=129.37  Aligned_cols=128  Identities=22%  Similarity=0.180  Sum_probs=103.3

Q ss_pred             hHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHH
Q 048100            3 SDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPL   82 (161)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (161)
                      |||.||+++|+++.|++|++.+.+++...+...+.|.+|   ++-|       ..++|+.|+.++++ ++..|++|.|||
T Consensus       162 TpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLA---t~gg-------ytdiV~lLL~r~vd-VNvyDwNGgTpL  230 (296)
T KOG0502|consen  162 TPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLA---TRGG-------YTDIVELLLTREVD-VNVYDWNGGTPL  230 (296)
T ss_pred             hHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHH---hcCC-------hHHHHHHHHhcCCC-cceeccCCCcee
Confidence            788888888888888888888888888888888888884   4333       57888888888887 577788888888


Q ss_pred             HHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCcC
Q 048100           83 HVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus        83 ~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                      -+|++.++.+|++.|++.|++                 ++..+..|.+++..|+..|+. +|+..++..+...++++
T Consensus       231 lyAvrgnhvkcve~Ll~sGAd-----------------~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl~Q~~  289 (296)
T KOG0502|consen  231 LYAVRGNHVKCVESLLNSGAD-----------------VTQEDDSGYWIMDLAVALGYR-IVQQVIEKHALKLCQDS  289 (296)
T ss_pred             eeeecCChHHHHHHHHhcCCC-----------------cccccccCCcHHHHHHHhhhH-HHHHHHHHHHHHHhhcc
Confidence            888888888888888888888                 667788888888888888877 77777776666555543

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.84  E-value=6.9e-20  Score=144.16  Aligned_cols=145  Identities=18%  Similarity=0.155  Sum_probs=93.2

Q ss_pred             hHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHH
Q 048100            3 SDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPL   82 (161)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (161)
                      ++++.|+..++.+.++.|++.+...+..+..|.||||+|+   ..++      ..+++++|++.|++ ++..+..|.|||
T Consensus       242 ~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa---~~~~------~~~iv~lLl~~gad-in~~d~~g~TpL  311 (682)
T PHA02876        242 LSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHAS---QAPS------LSRLVPKLLERGAD-VNAKNIKGETPL  311 (682)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH---hCCC------HHHHHHHHHHCCCC-CCCcCCCCCCHH
Confidence            4566777777777777777766666666777777777743   3322      13466667776665 355566677777


Q ss_pred             HHHHHhC-CHHHHHHHHHhhhcCCchhhhcC------------chhHHHHH------hhccCCCCCcHhHHHHHcCCHHH
Q 048100           83 HVAARYG-HAAVVGALIEFAEKQPGQELESG------------VKSTTRYM------LGMKNDEEDTALHEAVQSGSLDV  143 (161)
Q Consensus        83 ~~a~~~~-~~~~~~~Ll~~g~~~~~~~~~~~------------~~~~~~~l------~~~~~~~g~t~l~~a~~~~~~~~  143 (161)
                      |+|+..| ..+++++|+..|++.+.. ...|            ..++++.+      ++.+|..|.||||+|+..|+.++
T Consensus       312 h~Aa~~g~~~~~v~~Ll~~gadin~~-d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~i  390 (682)
T PHA02876        312 YLMAKNGYDTENIRTLIMLGADVNAA-DRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVI  390 (682)
T ss_pred             HHHHHhCCCHHHHHHHHHcCCCCCCc-ccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHH
Confidence            7777766 466777777776665443 1222            23334433      35677778888888888888888


Q ss_pred             HHHHHhCCCCCCCCc
Q 048100          144 VEILLGADPAFPYSA  158 (161)
Q Consensus       144 ~~~Ll~~~~~~~~~~  158 (161)
                      +++|+++|++++..+
T Consensus       391 v~~Ll~~gad~~~~~  405 (682)
T PHA02876        391 INTLLDYGADIEALS  405 (682)
T ss_pred             HHHHHHCCCCccccC
Confidence            888887777776543

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.83  E-value=1.4e-19  Score=107.44  Aligned_cols=89  Identities=27%  Similarity=0.469  Sum_probs=76.1

Q ss_pred             HHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHH
Q 048100           38 LHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTT  117 (161)
Q Consensus        38 l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~  117 (161)
                      ||+   |++.+       +.+++++|++.+.+. +.    |.||||+|+..|+.+++++|++.|++              
T Consensus         1 L~~---A~~~~-------~~~~~~~ll~~~~~~-~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~--------------   51 (89)
T PF12796_consen    1 LHI---AAQNG-------NLEILKFLLEKGADI-NL----GNTALHYAAENGNLEIVKLLLENGAD--------------   51 (89)
T ss_dssp             HHH---HHHTT-------THHHHHHHHHTTSTT-TS----SSBHHHHHHHTTTHHHHHHHHHTTTC--------------
T ss_pred             CHH---HHHcC-------CHHHHHHHHHCcCCC-CC----CCCHHHHHHHcCCHHHHHHHHHhccc--------------
Confidence            577   44555       489999999988763 22    88999999999999999999999998              


Q ss_pred             HHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCc
Q 048100          118 RYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSA  158 (161)
Q Consensus       118 ~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  158 (161)
                         ++.+|..|+||||+|+.+|+.+++++|+++|++++.++
T Consensus        52 ---~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   52 ---INSQDKNGNTALHYAAENGNLEIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             ---TT-BSTTSSBHHHHHHHTTHHHHHHHHHHTTT-TTSS-
T ss_pred             ---ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence               77788999999999999999999999999999998764

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02917 ankyrin-like protein; Provisional

Probab=99.83  E-value=1.1e-19  Score=141.50  Aligned_cols=127  Identities=20%  Similarity=0.199  Sum_probs=104.9

Q ss_pred             hHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchh--ccCCCC--
Q 048100            3 SDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLL--QVNAKG--   78 (161)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~--~~~~~~--   78 (161)
                      ++++.|+..|+++.++.|++.|.+++.+|..|.||||+++. +..+       ..+++++|+++|+++..  ..+..|  
T Consensus       105 ~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a-~~~~-------~~eivklLi~~Ga~vn~~d~~~~~g~~  176 (661)
T PHA02917        105 IFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVM-TDDP-------VPEIIDLFIENGCSVLYEDEDDEYGYA  176 (661)
T ss_pred             hHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHH-ccCC-------CHHHHHHHHHcCCCccccccccccccc
Confidence            45677888899999999999999999999999999997432 2233       48999999999998531  112233  


Q ss_pred             ---------CcHHHHHHH-----------hCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHc
Q 048100           79 ---------DSPLHVAAR-----------YGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQS  138 (161)
Q Consensus        79 ---------~t~l~~a~~-----------~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~  138 (161)
                               .||||+|+.           +++.+++++|+++|++                 ++.+|..|.||||+|+..
T Consensus       177 ~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gad-----------------vn~~d~~G~TpLh~A~~~  239 (661)
T PHA02917        177 YDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIK-----------------PSSIDKNYCTALQYYIKS  239 (661)
T ss_pred             cccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCC-----------------cccCCCCCCcHHHHHHHc
Confidence                     599999986           4689999999999999                 888899999999999999


Q ss_pred             CCH--HHHHHHHhCCCCCC
Q 048100          139 GSL--DVVEILLGADPAFP  155 (161)
Q Consensus       139 ~~~--~~~~~Ll~~~~~~~  155 (161)
                      |+.  +++++|+. |++++
T Consensus       240 g~~~~eivk~Li~-g~d~~  257 (661)
T PHA02917        240 SHIDIDIVKLLMK-GIDNT  257 (661)
T ss_pred             CCCcHHHHHHHHh-CCccc
Confidence            985  79999974 87664

>PHA02730 ankyrin-like protein; Provisional

Probab=99.82  E-value=3e-19  Score=137.32  Aligned_cols=137  Identities=11%  Similarity=0.142  Sum_probs=112.0

Q ss_pred             ChHHHHHHHcCC----hHHHHHHHhhhC--ccccccCCCCcHHHHHHHHhhhccc--ccccccHHHHHHHHHhCccchhc
Q 048100            2 NSDLYEAAAKGV----IEPFNQLAIDRQ--LGSLVIHKKNSVLHVNIIASYTQNK--EGESVSTKFVELVLETCPSLLLQ   73 (161)
Q Consensus         2 ~~~l~~A~~~g~----~~~v~~ll~~~~--~~~~~~~~g~t~l~~a~~a~~~~~~--~~~~~~~~~v~~Ll~~~~~~~~~   73 (161)
                      .||||.|+..++    .+.++.|+.++.  +.+.+|..|.||||.+..+...+..  ..+....+++++|++.|++ ++.
T Consensus       379 ~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GAD-INa  457 (672)
T PHA02730        379 NYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDD-IDM  457 (672)
T ss_pred             CcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccc-hhc
Confidence            589999998885    899999999886  5788899999999954333332210  0011134689999999998 588


Q ss_pred             cCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCC-CCCcHhHHHHHc--CCHHHHHHHHhC
Q 048100           74 VNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKND-EEDTALHEAVQS--GSLDVVEILLGA  150 (161)
Q Consensus        74 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~-~g~t~l~~a~~~--~~~~~~~~Ll~~  150 (161)
                      .|..|.||||+|+..++.+++++|+++|++                 ++.++. .|.||+|+|+..  ++.+++++|+++
T Consensus       458 kD~~G~TPLh~Aa~~~~~eive~LI~~GAd-----------------IN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~  520 (672)
T PHA02730        458 IDNENKTLLYYAVDVNNIQFARRLLEYGAS-----------------VNTTSRSIINTAIQKSSYRRENKTKLVDLLLSY  520 (672)
T ss_pred             cCCCCCCHHHHHHHhCCHHHHHHHHHCCCC-----------------CCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHc
Confidence            899999999999999999999999999999                 677786 699999999984  799999999999


Q ss_pred             CCCCCC
Q 048100          151 DPAFPY  156 (161)
Q Consensus       151 ~~~~~~  156 (161)
                      ||++..
T Consensus       521 ga~i~~  526 (672)
T PHA02730        521 HPTLET  526 (672)
T ss_pred             CCCHHH
Confidence            998753

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.82  E-value=2e-19  Score=115.16  Aligned_cols=117  Identities=22%  Similarity=0.256  Sum_probs=99.3

Q ss_pred             HHHHHHHcCChHHHHHHHhhh-CccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHH
Q 048100            4 DLYEAAAKGVIEPFNQLAIDR-QLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPL   82 (161)
Q Consensus         4 ~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (161)
                      -+.+|+..+.+..|+.|++.. .-++.+|.+|+||||-   |+|.|+       .+|++.|+..|++ ...+...|||||
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHR---AaYn~h-------~div~~ll~~gAn-~~a~T~~GWTPL  134 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHR---AAYNGH-------LDIVHELLLSGAN-KEAKTNEGWTPL  134 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHH---HHhcCc-------hHHHHHHHHccCC-cccccccCccch
Confidence            478999999999999998654 4568999999999999   667774       8999999999987 577899999999


Q ss_pred             HHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHH-HHHHH
Q 048100           83 HVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDV-VEILL  148 (161)
Q Consensus        83 ~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~-~~~Ll  148 (161)
                      |.||.-.+.+++.+|+++|++                 ++.......||||+|+...+... +.+|+
T Consensus       135 hSAckWnN~~va~~LLqhgaD-----------------VnA~t~g~ltpLhlaa~~rn~r~t~~~Ll  184 (228)
T KOG0512|consen  135 HSACKWNNFEVAGRLLQHGAD-----------------VNAQTKGLLTPLHLAAGNRNSRDTLELLL  184 (228)
T ss_pred             hhhhcccchhHHHHHHhccCc-----------------ccccccccchhhHHhhcccchHHHHHHHh
Confidence            999999999999999999999                 55566777889998888755444 55554

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.81  E-value=1.5e-19  Score=144.19  Aligned_cols=121  Identities=26%  Similarity=0.284  Sum_probs=61.7

Q ss_pred             HHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHHH
Q 048100            4 DLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLH   83 (161)
Q Consensus         4 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~   83 (161)
                      ++|.|...+....++.+++++...+.++..|+||||.   |+..|+       .++|++|+++|+++ +..+..|+||||
T Consensus       510 ~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~---A~~~g~-------v~~VkfLLe~gAdv-~ak~~~G~TPLH  578 (1143)
T KOG4177|consen  510 PLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHV---AVHYGN-------VDLVKFLLEHGADV-NAKDKLGYTPLH  578 (1143)
T ss_pred             hhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHH---HHhcCC-------chHHHHhhhCCccc-cccCCCCCChhh
Confidence            3444444444444444444444445555555555555   333332       44555555555542 333455555555


Q ss_pred             HHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCC
Q 048100           84 VAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADP  152 (161)
Q Consensus        84 ~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~  152 (161)
                      .||..|+.+++.+|+++|+.                 ++..|.+|.|||++|+..|+++.+++|+..+.
T Consensus       579 ~Aa~~G~~~i~~LLlk~GA~-----------------vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~  630 (1143)
T KOG4177|consen  579 QAAQQGHNDIAELLLKHGAS-----------------VNAADLDGFTPLHIAVRLGYLSVVKLLKVVTA  630 (1143)
T ss_pred             HHHHcChHHHHHHHHHcCCC-----------------CCcccccCcchhHHHHHhcccchhhHHHhccC
Confidence            55555555555555555555                 44445555555555555555555555554443

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.81  E-value=1.6e-19  Score=132.41  Aligned_cols=93  Identities=23%  Similarity=0.282  Sum_probs=84.0

Q ss_pred             HHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHHH
Q 048100            4 DLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLH   83 (161)
Q Consensus         4 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~   83 (161)
                      .|+.|+..|+.+.+..|+..+..++..+.+|.|+||-+++..          +.+||+||++.|+. ++..|..+|||+|
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~----------~~e~v~~l~e~ga~-Vn~~d~e~wtPlh  111 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDD----------NLEMVKFLVENGAN-VNAQDNEGWTPLH  111 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcc----------cHHHHHHHHHhcCC-ccccccccCCcch
Confidence            478899999999999999999999999999999999955443          58999999999998 5788999999999


Q ss_pred             HHHHhCCHHHHHHHHHhhhcCCch
Q 048100           84 VAARYGHAAVVGALIEFAEKQPGQ  107 (161)
Q Consensus        84 ~a~~~~~~~~~~~Ll~~g~~~~~~  107 (161)
                      .|+.-|+..++++|+.+|++..+.
T Consensus       112 aaascg~~~i~~~li~~gA~~~av  135 (527)
T KOG0505|consen  112 AAASCGYLNIVEYLIQHGANLLAV  135 (527)
T ss_pred             hhcccccHHHHHHHHHhhhhhhhc
Confidence            999999999999999999987555

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.80  E-value=1.9e-19  Score=119.35  Aligned_cols=142  Identities=21%  Similarity=0.215  Sum_probs=99.9

Q ss_pred             HHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHHHH
Q 048100            5 LYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHV   84 (161)
Q Consensus         5 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~   84 (161)
                      ++.|+-.|+...+...+.++.-.+..+.-+++|+.++   -+..       +++.+..+.+.-   ++..|..|.|||.|
T Consensus       100 ~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~sls---Vhql-------~L~~~~~~~~n~---VN~~De~GfTpLiW  166 (296)
T KOG0502|consen  100 LLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLS---VHQL-------HLDVVDLLVNNK---VNACDEFGFTPLIW  166 (296)
T ss_pred             hhhcCCCCCcceeeeeecccccCCccccccCChhhHH---HHHH-------HHHHHHHHhhcc---ccCccccCchHhHH
Confidence            5566666666666666666666677777777777773   2222       244444444322   45567777777777


Q ss_pred             HHHhCCHHHHHHHHHhhhcCCch----------hhhcCchhHHHHHh------hccCCCCCcHhHHHHHcCCHHHHHHHH
Q 048100           85 AARYGHAAVVGALIEFAEKQPGQ----------ELESGVKSTTRYML------GMKNDEEDTALHEAVQSGSLDVVEILL  148 (161)
Q Consensus        85 a~~~~~~~~~~~Ll~~g~~~~~~----------~~~~~~~~~~~~l~------~~~~~~g~t~l~~a~~~~~~~~~~~Ll  148 (161)
                      |+..|+...|+||++.|+++...          +...|+..++++|+      +.-|++|.|||-+|++-++.+|++.|+
T Consensus       167 Aaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll  246 (296)
T KOG0502|consen  167 AAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLL  246 (296)
T ss_pred             HHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHH
Confidence            77777777777777777775444          34555666777664      678999999999999999999999999


Q ss_pred             hCCCCCCCCcC
Q 048100          149 GADPAFPYSAN  159 (161)
Q Consensus       149 ~~~~~~~~~~~  159 (161)
                      +.|++++..+.
T Consensus       247 ~sGAd~t~e~d  257 (296)
T KOG0502|consen  247 NSGADVTQEDD  257 (296)
T ss_pred             hcCCCcccccc
Confidence            99999986654

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.80  E-value=3.3e-19  Score=142.36  Aligned_cols=128  Identities=27%  Similarity=0.344  Sum_probs=116.3

Q ss_pred             hHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHH
Q 048100            3 SDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPL   82 (161)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (161)
                      |+||.|+..|+.+.++.+++.....+.....+-+++|++....          ...+++.++.+|+. ....+..|+|||
T Consensus       476 T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~----------~v~~~~~l~~~ga~-v~~~~~r~~TpL  544 (1143)
T KOG4177|consen  476 TPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADED----------TVKVAKILLEHGAN-VDLRTGRGYTPL  544 (1143)
T ss_pred             cchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhh----------hHHHHHHHhhcCCc-eehhcccccchH
Confidence            7899999999999999999888778888889999999965444          47889999999987 467789999999


Q ss_pred             HHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCc
Q 048100           83 HVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSA  158 (161)
Q Consensus        83 ~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  158 (161)
                      |+|+.+|+.++|++|+++|++                 .+.+++.|+||||.|+..|+.+|+.+|+++|++++..+
T Consensus       545 h~A~~~g~v~~VkfLLe~gAd-----------------v~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d  603 (1143)
T KOG4177|consen  545 HVAVHYGNVDLVKFLLEHGAD-----------------VNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAAD  603 (1143)
T ss_pred             HHHHhcCCchHHHHhhhCCcc-----------------ccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCccc
Confidence            999999999999999999999                 77788999999999999999999999999999998654

>PHA02741 hypothetical protein; Provisional

Probab=99.79  E-value=2.7e-18  Score=113.54  Aligned_cols=103  Identities=20%  Similarity=0.244  Sum_probs=86.0

Q ss_pred             ccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHh------CccchhccCCCCCcHHHHHHHhCC----HHHHHHH
Q 048100           28 SLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLET------CPSLLLQVNAKGDSPLHVAARYGH----AAVVGAL   97 (161)
Q Consensus        28 ~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~------~~~~~~~~~~~~~t~l~~a~~~~~----~~~~~~L   97 (161)
                      +.++..|.||||+   ++..|+       .+++++|+..      +.. ++..|..|+||||+|+..|+    .+++++|
T Consensus        15 ~~~~~~g~t~Lh~---Aa~~g~-------~~~v~~l~~~~~~~~~ga~-in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~L   83 (169)
T PHA02741         15 AEKNSEGENFFHE---AARCGC-------FDIIARFTPFIRGDCHAAA-LNATDDAGQMCIHIAAEKHEAQLAAEIIDHL   83 (169)
T ss_pred             hccccCCCCHHHH---HHHcCC-------HHHHHHHHHHhccchhhhh-hhccCCCCCcHHHHHHHcCChHHHHHHHHHH
Confidence            4567899999999   556664       8899988642      333 57789999999999999998    5899999


Q ss_pred             HHhhhcCCchhhhcCchhHHHHHhhccCC-CCCcHhHHHHHcCCHHHHHHHHh-CCCCCCCCc
Q 048100           98 IEFAEKQPGQELESGVKSTTRYMLGMKND-EEDTALHEAVQSGSLDVVEILLG-ADPAFPYSA  158 (161)
Q Consensus        98 l~~g~~~~~~~~~~~~~~~~~~l~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~  158 (161)
                      ++.|++                 ++.++. .|+||||+|+..++.+++++|+. .|++++..+
T Consensus        84 l~~gad-----------------in~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n  129 (169)
T PHA02741         84 IELGAD-----------------INAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCN  129 (169)
T ss_pred             HHcCCC-----------------CCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCC
Confidence            999998                 666774 89999999999999999999997 588887654

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.79  E-value=2.2e-18  Score=102.24  Aligned_cols=86  Identities=27%  Similarity=0.322  Sum_probs=74.3

Q ss_pred             HHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHHHH
Q 048100            5 LYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHV   84 (161)
Q Consensus         5 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~   84 (161)
                      ||.|++.|+++.+++|++.+...+.    |.||||+|   +..|       ..+++++|++.|++ ++..+..|+||||+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A---~~~~-------~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~   65 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYA---AENG-------NLEIVKLLLENGAD-INSQDKNGNTALHY   65 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHH---HHTT-------THHHHHHHHHTTTC-TT-BSTTSSBHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHH---HHcC-------CHHHHHHHHHhccc-ccccCCCCCCHHHH
Confidence            7999999999999999987766654    99999994   4555       48999999999987 57778999999999


Q ss_pred             HHHhCCHHHHHHHHHhhhcCC
Q 048100           85 AARYGHAAVVGALIEFAEKQP  105 (161)
Q Consensus        85 a~~~~~~~~~~~Ll~~g~~~~  105 (161)
                      |+.+++.+++++|+++|++++
T Consensus        66 A~~~~~~~~~~~Ll~~g~~~~   86 (89)
T PF12796_consen   66 AAENGNLEIVKLLLEHGADVN   86 (89)
T ss_dssp             HHHTTHHHHHHHHHHTTT-TT
T ss_pred             HHHcCCHHHHHHHHHcCCCCC
Confidence            999999999999999998843

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.79  E-value=3.2e-19  Score=135.49  Aligned_cols=147  Identities=24%  Similarity=0.257  Sum_probs=128.1

Q ss_pred             hHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHH
Q 048100            3 SDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPL   82 (161)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (161)
                      |.||.|+..|+.++++.|++.....++.|..|.+|||+   ++..|+       .++++.++.++ +.++..+..|.|||
T Consensus        51 Talhha~Lng~~~is~llle~ea~ldl~d~kg~~plhl---aaw~g~-------~e~vkmll~q~-d~~na~~~e~~tpl  119 (854)
T KOG0507|consen   51 TLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHL---AAWNGN-------LEIVKMLLLQT-DILNAVNIENETPL  119 (854)
T ss_pred             hHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEe---hhhcCc-------chHHHHHHhcc-cCCCcccccCcCcc
Confidence            68999999999999999999999999999999999999   566664       78999999988 55788899999999


Q ss_pred             HHHHHhCCHHHHHHHHHhhhcCCch----------hhhcCchhHHHHHhh--------------ccCCCCCcHhHHHHHc
Q 048100           83 HVAARYGHAAVVGALIEFAEKQPGQ----------ELESGVKSTTRYMLG--------------MKNDEEDTALHEAVQS  138 (161)
Q Consensus        83 ~~a~~~~~~~~~~~Ll~~g~~~~~~----------~~~~~~~~~~~~l~~--------------~~~~~g~t~l~~a~~~  138 (161)
                      |.|++.|+.+++.+|+.+|++....          +...|+..+++.++.              .++..+.+|+|.|+++
T Consensus       120 hlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakn  199 (854)
T KOG0507|consen  120 HLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKN  199 (854)
T ss_pred             chhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhc
Confidence            9999999999999999999986444          456677777777652              4567888999999999


Q ss_pred             CCHHHHHHHHhCCCCCCCCcCC
Q 048100          139 GSLDVVEILLGADPAFPYSANG  160 (161)
Q Consensus       139 ~~~~~~~~Ll~~~~~~~~~~~~  160 (161)
                      |+.++++.|+++|.++|..+++
T Consensus       200 gh~~~~~~ll~ag~din~~t~~  221 (854)
T KOG0507|consen  200 GHVECMQALLEAGFDINYTTED  221 (854)
T ss_pred             chHHHHHHHHhcCCCccccccc
Confidence            9999999999999999987764

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.78  E-value=1.2e-17  Score=104.37  Aligned_cols=119  Identities=28%  Similarity=0.395  Sum_probs=105.7

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      .|+|+.|++.++.+.++.|++.+...+..+..|.+|+|+|+..   +       ..+++++|++.++. .+..+..+.||
T Consensus         8 ~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~---~-------~~~~~~~ll~~~~~-~~~~~~~~~~~   76 (126)
T cd00204           8 RTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKN---G-------HLEIVKLLLEKGAD-VNARDKDGNTP   76 (126)
T ss_pred             CCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHc---C-------CHHHHHHHHHcCCC-ccccCCCCCCH
Confidence            4899999999999999999998888788999999999995443   3       47899999999875 45667899999


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHH
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILL  148 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  148 (161)
                      +|+|+..++.+++++|++.+..                 ++..+..|.||+++|...++.+++++|+
T Consensus        77 l~~a~~~~~~~~~~~L~~~~~~-----------------~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          77 LHLAARNGNLDVVKLLLKHGAD-----------------VNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHHHHcCcHHHHHHHHHcCCC-----------------CcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            9999999999999999999866                 6667899999999999999999999884

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PHA02792 ankyrin-like protein; Provisional

Probab=99.77  E-value=3.3e-18  Score=130.55  Aligned_cols=127  Identities=11%  Similarity=0.075  Sum_probs=107.6

Q ss_pred             HHHHHHHcCChHHHHHHHhhhCccccccCCC--CcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            4 DLYEAAAKGVIEPFNQLAIDRQLGSLVIHKK--NSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         4 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g--~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      .++.|+..|+.+.++.|+..|++++.+|..|  .||||+|......       ...+++++|++.|++ ++..|..|+||
T Consensus       342 ~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~-------~v~~IlklLIs~GAD-IN~kD~~G~TP  413 (631)
T PHA02792        342 KYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHES-------DVLSILKLCKPYIDD-INKIDKHGRSI  413 (631)
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccH-------hHHHHHHHHHhcCCc-cccccccCcch
Confidence            4788999999999999999999999888775  6999984332211       135678999999988 57789999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHH----------cCCHHHHHHHHhCC
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQ----------SGSLDVVEILLGAD  151 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~----------~~~~~~~~~Ll~~~  151 (161)
                      ||+|+..++.+++++|+++|++                 ++.+|..|.|||++|+.          ....+++++|++.|
T Consensus       414 Lh~Aa~~~n~eivelLLs~GAD-----------------IN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~  476 (631)
T PHA02792        414 LYYCIESHSVSLVEWLIDNGAD-----------------INITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKL  476 (631)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCC-----------------CCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999998                 78889999999999976          23467899999999


Q ss_pred             CCCC
Q 048100          152 PAFP  155 (161)
Q Consensus       152 ~~~~  155 (161)
                      |++.
T Consensus       477 p~i~  480 (631)
T PHA02792        477 PTIE  480 (631)
T ss_pred             CChh
Confidence            9875

>PHA02730 ankyrin-like protein; Provisional

Probab=99.77  E-value=7.3e-18  Score=129.75  Aligned_cols=132  Identities=16%  Similarity=0.086  Sum_probs=73.6

Q ss_pred             HHHHHHhhhCccc-cccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHHHHHHHhC--CHH
Q 048100           16 PFNQLAIDRQLGS-LVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYG--HAA   92 (161)
Q Consensus        16 ~v~~ll~~~~~~~-~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~--~~~   92 (161)
                      .+++.++....++ .+|..|.||||+|+..+..+       +.+++++|+++|++ ++..|..|+||||+|+.++  +.+
T Consensus        22 ~~~~~~~~~~~in~~kd~~G~TaLh~A~~~~~~~-------~~eivklLLs~GAd-in~kD~~G~TPLh~Aa~~~~~~~e   93 (672)
T PHA02730         22 KIKLEIETCHNLSKHIDRRGNNALHCYVSNKCDT-------DIKIVRLLLSRGVE-RLCRNNEGLTPLGVYSKRKYVKSQ   93 (672)
T ss_pred             HHHHHHHHhcchhhhcCCCCCcHHHHHHHcCCcC-------cHHHHHHHHhCCCC-CcccCCCCCChHHHHHHcCCCcHH
Confidence            3444444443333 44555555555533221111       24555555555555 3444555555555555544  455


Q ss_pred             HHHHHHHhhhcCCch--------------hhhcCchhHHHHHhh-----------ccC-CCCCcHhHHHHHcCCHHHHHH
Q 048100           93 VVGALIEFAEKQPGQ--------------ELESGVKSTTRYMLG-----------MKN-DEEDTALHEAVQSGSLDVVEI  146 (161)
Q Consensus        93 ~~~~Ll~~g~~~~~~--------------~~~~~~~~~~~~l~~-----------~~~-~~g~t~l~~a~~~~~~~~~~~  146 (161)
                      ++++|++.|+..+..              +...+..+++++|+.           ..+ ..|.+|+++++..++.++|++
T Consensus        94 Iv~~Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvkl  173 (672)
T PHA02730         94 IVHLLISSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLW  173 (672)
T ss_pred             HHHHHHhcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHH
Confidence            555555554422111              122444445555552           111 378999999999999999999


Q ss_pred             HHhCCCCCC
Q 048100          147 LLGADPAFP  155 (161)
Q Consensus       147 Ll~~~~~~~  155 (161)
                      |++.|++++
T Consensus       174 Li~~g~~v~  182 (672)
T PHA02730        174 LLKSECYST  182 (672)
T ss_pred             HHHcCCccc
Confidence            999999985

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.76  E-value=1.6e-17  Score=117.99  Aligned_cols=106  Identities=16%  Similarity=0.130  Sum_probs=88.6

Q ss_pred             cccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhcc----CCCCCcHHHHHHHhCCHHHHHHHHHhhh
Q 048100           27 GSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQV----NAKGDSPLHVAARYGHAAVVGALIEFAE  102 (161)
Q Consensus        27 ~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~----~~~~~t~l~~a~~~~~~~~~~~Ll~~g~  102 (161)
                      ...+|..|.|+++++  |...+       ..+++++|+++|+++ +..    +..|.||||+|+..++.+++++|+++|+
T Consensus        25 ~~~~d~~~~~~lL~~--A~~~~-------~~eivk~LL~~GAdi-N~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GA   94 (300)
T PHA02884         25 IKKKNKICIANILYS--SIKFH-------YTDIIDAILKLGADP-EAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGA   94 (300)
T ss_pred             hhccCcCCCCHHHHH--HHHcC-------CHHHHHHHHHCCCCc-cccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            345778888777664  33444       489999999999984 444    4689999999999999999999999999


Q ss_pred             cCCchhhhcCchhHHHHHhhcc-CCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCcC
Q 048100          103 KQPGQELESGVKSTTRYMLGMK-NDEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       103 ~~~~~~~~~~~~~~~~~l~~~~-~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                      +                 ++.+ +..|.||||+|+..++.+++++|+.+|++++..++
T Consensus        95 D-----------------VN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~  135 (300)
T PHA02884         95 D-----------------VNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTN  135 (300)
T ss_pred             C-----------------cCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Confidence            9                 5554 56899999999999999999999999999987653

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.74  E-value=2.2e-17  Score=108.85  Aligned_cols=112  Identities=13%  Similarity=0.113  Sum_probs=87.7

Q ss_pred             hCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHH---HHHHHHh
Q 048100           24 RQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAV---VGALIEF  100 (161)
Q Consensus        24 ~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~---~~~Ll~~  100 (161)
                      +.+....+..+.+++|.|+   ..|+..   ...+++++|.+.++. ++..|..|+||||+|+..|+.+.   +++|++.
T Consensus        10 ~~~~~~~~~~~~~~l~~a~---~~g~~~---~l~~~~~~l~~~g~~-~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~   82 (166)
T PHA02743         10 NLGAVEIDEDEQNTFLRIC---RTGNIY---ELMEVAPFISGDGHL-LHRYDHHGRQCTHMVAWYDRANAVMKIELLVNM   82 (166)
T ss_pred             chHHhhhccCCCcHHHHHH---HcCCHH---HHHHHHHHHhhcchh-hhccCCCCCcHHHHHHHhCccCHHHHHHHHHHc
Confidence            3445567788889999955   444310   013677788887776 56778999999999999988654   8999999


Q ss_pred             hhcCCchhhhcCchhHHHHHhhccC-CCCCcHhHHHHHcCCHHHHHHHHh-CCCCCCCCcC
Q 048100          101 AEKQPGQELESGVKSTTRYMLGMKN-DEEDTALHEAVQSGSLDVVEILLG-ADPAFPYSAN  159 (161)
Q Consensus       101 g~~~~~~~~~~~~~~~~~~l~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~  159 (161)
                      |++                 ++.++ ..|.||||+|+..++.+++++|+. .|++++.+++
T Consensus        83 Gad-----------------in~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~  126 (166)
T PHA02743         83 GAD-----------------INARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINY  126 (166)
T ss_pred             CCC-----------------CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCC
Confidence            998                 67777 589999999999999999999995 7998876553

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.73  E-value=3.8e-18  Score=117.62  Aligned_cols=107  Identities=25%  Similarity=0.267  Sum_probs=69.5

Q ss_pred             hCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhc
Q 048100           24 RQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEK  103 (161)
Q Consensus        24 ~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~  103 (161)
                      .-+.++-|..|.+||||   ++.-|       +..+++.|+.+|+. ++..+.-..||||+|+..||.++++.|++..++
T Consensus        24 ehdln~gddhgfsplhw---aakeg-------h~aivemll~rgar-vn~tnmgddtplhlaaahghrdivqkll~~kad   92 (448)
T KOG0195|consen   24 EHDLNVGDDHGFSPLHW---AAKEG-------HVAIVEMLLSRGAR-VNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKAD   92 (448)
T ss_pred             ccccccccccCcchhhh---hhhcc-------cHHHHHHHHhcccc-cccccCCCCcchhhhhhcccHHHHHHHHHHhcc
Confidence            34555666677777777   33333       36677777777665 345455556777777777777777777776666


Q ss_pred             CCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCc
Q 048100          104 QPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSA  158 (161)
Q Consensus       104 ~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  158 (161)
                                       ++..+..|+||||+|+.-|...+++-|+..|+.++..+
T Consensus        93 -----------------vnavnehgntplhyacfwgydqiaedli~~ga~v~icn  130 (448)
T KOG0195|consen   93 -----------------VNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICN  130 (448)
T ss_pred             -----------------cchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecc
Confidence                             55666777777777777777777777776666665443

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.72  E-value=7e-17  Score=128.31  Aligned_cols=136  Identities=21%  Similarity=0.173  Sum_probs=98.3

Q ss_pred             ChHHHHHHHcCChHHHHHHHhh--hCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCC
Q 048100            2 NSDLYEAAAKGVIEPFNQLAID--RQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGD   79 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~--~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~   79 (161)
                      +.+|+.|++.|+.+.++.+++.  +.+.+..|..|.||||++  |...+       ..++++.|++.+.     .+..|.
T Consensus        18 ~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~--A~~~~-------~~eiv~lLl~~g~-----~~~~G~   83 (743)
T TIGR00870        18 EKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVA--AIENE-------NLELTELLLNLSC-----RGAVGD   83 (743)
T ss_pred             HHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHH--HHhcC-------hHHHHHHHHhCCC-----CCCcCh
Confidence            4679999999999999999988  778888999999999942  22223       4889999999876     578899


Q ss_pred             cHHHHHHHhC---CHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCC
Q 048100           80 SPLHVAARYG---HAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPY  156 (161)
Q Consensus        80 t~l~~a~~~~---~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~  156 (161)
                      ||||.|+..+   ...+++.+...+...       +............+..|.||||+|+..|+.+++++|++.|++++.
T Consensus        84 T~Lh~A~~~~~~~v~~ll~~l~~~~~~~-------~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~  156 (743)
T TIGR00870        84 TLLHAISLEYVDAVEAILLHLLAAFRKS-------GPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPA  156 (743)
T ss_pred             HHHHHHHhccHHHHHHHHHHHhhccccc-------CchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCc
Confidence            9999998732   223334443333110       000000000122346799999999999999999999999999986


Q ss_pred             Cc
Q 048100          157 SA  158 (161)
Q Consensus       157 ~~  158 (161)
                      +.
T Consensus       157 ~~  158 (743)
T TIGR00870       157 RA  158 (743)
T ss_pred             Cc
Confidence            53

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.72  E-value=4.3e-17  Score=112.45  Aligned_cols=125  Identities=22%  Similarity=0.206  Sum_probs=103.8

Q ss_pred             hHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHH
Q 048100            3 SDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPL   82 (161)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (161)
                      +|||+|++.|+...++.|+..++-.+..+....||||+   ++..|+       .++|+.|++.-++ ++..+..|.|||
T Consensus        36 splhwaakegh~aivemll~rgarvn~tnmgddtplhl---aaahgh-------rdivqkll~~kad-vnavnehgntpl  104 (448)
T KOG0195|consen   36 SPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHL---AAAHGH-------RDIVQKLLSRKAD-VNAVNEHGNTPL  104 (448)
T ss_pred             chhhhhhhcccHHHHHHHHhcccccccccCCCCcchhh---hhhccc-------HHHHHHHHHHhcc-cchhhccCCCch
Confidence            68999999999999999999999999999999999999   556664       8999999998887 578899999999


Q ss_pred             HHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCC
Q 048100           83 HVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFP  155 (161)
Q Consensus        83 ~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~  155 (161)
                      ||||.-|...+++-|+..|+.                 ++.-++.|.||+..|.-.-...+.+.--+.|-+++
T Consensus       105 hyacfwgydqiaedli~~ga~-----------------v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~n  160 (448)
T KOG0195|consen  105 HYACFWGYDQIAEDLISCGAA-----------------VNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPN  160 (448)
T ss_pred             hhhhhhcHHHHHHHHHhccce-----------------eeecccCCCCchhhhchHHHHHHHHHHHHhCCCCC
Confidence            999999999999999999998                 77889999999987644322222222224455544

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.71  E-value=7.4e-17  Score=129.21  Aligned_cols=120  Identities=17%  Similarity=0.072  Sum_probs=90.4

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhc---------------------ccccccccHHHH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQ---------------------NKEGESVSTKFV   60 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~---------------------~~~~~~~~~~~v   60 (161)
                      .||||.|+..|+.++++.|++.+.+++.+|..|.||||+|+..+...                     +.+...++.+++
T Consensus       559 ~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v  638 (823)
T PLN03192        559 RTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAM  638 (823)
T ss_pred             CCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHH
Confidence            58999999999999999999999999999999999999965433110                     011223456777


Q ss_pred             HHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCC-CcHhHHHHHcC
Q 048100           61 ELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEE-DTALHEAVQSG  139 (161)
Q Consensus        61 ~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g-~t~l~~a~~~~  139 (161)
                      ++|+++|++ ++..|.+|+||||+|+..|+.+++++|+++|++                 ++..|..| .||..++....
T Consensus       639 ~~Ll~~Gad-in~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAd-----------------v~~~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        639 KELLKQGLN-VDSEDHQGATALQVAMAEDHVDMVRLLIMNGAD-----------------VDKANTDDDFSPTELRELLQ  700 (823)
T ss_pred             HHHHHCCCC-CCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCC-----------------CCCCCCCCCCCHHHHHHHHH
Confidence            777777776 466677788888888888888888888877777                 55667666 88887765543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.71  E-value=2e-16  Score=108.27  Aligned_cols=127  Identities=25%  Similarity=0.283  Sum_probs=112.2

Q ss_pred             hHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCc--cchhccCCCCCc
Q 048100            3 SDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCP--SLLLQVNAKGDS   80 (161)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~--~~~~~~~~~~~t   80 (161)
                      ++++.++..++.+.+++++..+..++..+..|.||||+|+.   .++.  ..+..+++++|++.++  +.....+..|+|
T Consensus        75 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~---~~~~--~~~~~~~~~~ll~~g~~~~~~~~~~~~g~t  149 (235)
T COG0666          75 LPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAAL---NGNP--PEGNIEVAKLLLEAGADLDVNNLRDEDGNT  149 (235)
T ss_pred             CHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHh---cCCc--ccchHHHHHHHHHcCCCCCCccccCCCCCc
Confidence            67899999999999999999999999999999999999554   3321  1123789999999999  567778999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCC
Q 048100           81 PLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGAD  151 (161)
Q Consensus        81 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  151 (161)
                      |||+|+..|+.+++++|++.|++                 ++.++..|.|++++|+..++.+++++++..+
T Consensus       150 pl~~A~~~~~~~~~~~ll~~~~~-----------------~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         150 PLHWAALNGDADIVELLLEAGAD-----------------PNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             hhHHHHHcCchHHHHHHHhcCCC-----------------CcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            99999999999999999999988                 6777999999999999999999999999865

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.70  E-value=1.9e-16  Score=125.82  Aligned_cols=144  Identities=16%  Similarity=0.082  Sum_probs=100.7

Q ss_pred             ChHHH-HHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccc-----h----
Q 048100            2 NSDLY-EAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSL-----L----   71 (161)
Q Consensus         2 ~~~l~-~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~-----~----   71 (161)
                      .|||| .|++.++.+.++.|+..+.    .+..|.||||+|+.....+       ...++..+...+...     .    
T Consensus        53 ~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~~~~~~~-------v~~ll~~l~~~~~~~~~~~~~~~~~  121 (743)
T TIGR00870        53 RSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAISLEYVDA-------VEAILLHLLAAFRKSGPLELANDQY  121 (743)
T ss_pred             hhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHHhccHHH-------HHHHHHHHhhcccccCchhhhcccc
Confidence            47999 8888889999999987776    6788999999965421111       244555555544220     0    


Q ss_pred             hccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCC
Q 048100           72 LQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGAD  151 (161)
Q Consensus        72 ~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  151 (161)
                      ......|.||||+|+..++.+++++|+++|++.+..+.+.   .+...........|.||||+|+..|+.+++++|++.|
T Consensus       122 ~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~---~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~g  198 (743)
T TIGR00870       122 TSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGD---FFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDP  198 (743)
T ss_pred             ccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCc---hhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCC
Confidence            1123569999999999999999999999999866431100   0000000011246999999999999999999999999


Q ss_pred             CCCCCCcC
Q 048100          152 PAFPYSAN  159 (161)
Q Consensus       152 ~~~~~~~~  159 (161)
                      +|++..++
T Consensus       199 adin~~d~  206 (743)
T TIGR00870       199 ADILTADS  206 (743)
T ss_pred             cchhhHhh
Confidence            98876554

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.69  E-value=1.9e-16  Score=91.37  Aligned_cols=90  Identities=16%  Similarity=0.159  Sum_probs=77.9

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      +-.+.|++..|.++.|++.+..+.+.+.. ..|++|||+|   +-+|       .+++++||+..|++ ++..|+.|-||
T Consensus         3 d~~~~W~vkNG~~DeVk~~v~~g~nVn~~-~ggR~plhyA---AD~G-------Ql~ilefli~iGA~-i~~kDKygITP   70 (117)
T KOG4214|consen    3 DMSVAWNVKNGEIDEVKQSVNEGLNVNEI-YGGRTPLHYA---ADYG-------QLSILEFLISIGAN-IQDKDKYGITP   70 (117)
T ss_pred             chhHhhhhccCcHHHHHHHHHccccHHHH-hCCcccchHh---hhcc-------hHHHHHHHHHhccc-cCCccccCCcH
Confidence            45688999999999999998777554422 3899999994   4455       58999999999998 57889999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhc
Q 048100           82 LHVAARYGHAAVVGALIEFAEK  103 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~  103 (161)
                      |..|+..||.+||++|++.|++
T Consensus        71 LLsAvwEGH~~cVklLL~~GAd   92 (117)
T KOG4214|consen   71 LLSAVWEGHRDCVKLLLQNGAD   92 (117)
T ss_pred             HHHHHHHhhHHHHHHHHHcCcc
Confidence            9999999999999999999998

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.69  E-value=3.6e-16  Score=107.67  Aligned_cols=120  Identities=27%  Similarity=0.203  Sum_probs=109.5

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      ..+|+.++..++.+....|+......+.+|..|.++|..   |++-|+       +++++.|++.|+++...++..+.||
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~Lah---AaykGn-------l~~v~lll~~gaDvN~~qhg~~YTp   82 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAH---AAYKGN-------LTLVELLLELGADVNDKQHGTLYTP   82 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHH---HHhcCc-------HHHHHHHHHhCCCcCcccccccccH
Confidence            368999999999999999998877789999999999999   778886       8999999999999776778889999


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHH
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILL  148 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  148 (161)
                      ||.|+.+|+.+++++|++.|+.                 ..+.|.-|+|+-..|+.-|+.+||..+=
T Consensus        83 LmFAALSGn~dvcrllldaGa~-----------------~~~vNsvgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen   83 LMFAALSGNQDVCRLLLDAGAR-----------------MYLVNSVGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             HHHHHHcCCchHHHHHHhccCc-----------------cccccchhhhHHHHHHHhcchHHHHHHh
Confidence            9999999999999999999988                 6678889999999999999999988763

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.68  E-value=1.9e-16  Score=116.62  Aligned_cols=117  Identities=20%  Similarity=0.240  Sum_probs=96.2

Q ss_pred             HHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHHHH
Q 048100            5 LYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHV   84 (161)
Q Consensus         5 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~   84 (161)
                      |+.|+..|.++.|+.++..-.++...+..|.|+||-|+.++          +.+||+||++.|++ ++..|.+||||||.
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCag----------hyeIVkFLi~~gan-VNa~DSdGWTPLHC  622 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAG----------HYEIVKFLIEFGAN-VNAADSDGWTPLHC  622 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcc----------hhHHHHHHHhcCCc-ccCccCCCCchhhh
Confidence            67899999999999999888899999999999999998777          68899999999998 58889999999999


Q ss_pred             HHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHH--cCCHHHHHHHH
Q 048100           85 AARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQ--SGSLDVVEILL  148 (161)
Q Consensus        85 a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~--~~~~~~~~~Ll  148 (161)
                      |+.-.+..+++.|++.|+.+.+.                .-.++.|+...+-.  .|...|.+||-
T Consensus       623 AASCNnv~~ckqLVe~GaavfAs----------------TlSDmeTa~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  623 AASCNNVPMCKQLVESGAAVFAS----------------TLSDMETAAEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             hhhcCchHHHHHHHhccceEEee----------------ecccccchhhhcchhhhhHHHHHHHHH
Confidence            99999999999999999885444                34455555543222  35555555554

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.67  E-value=2.2e-16  Score=101.36  Aligned_cols=88  Identities=24%  Similarity=0.246  Sum_probs=81.7

Q ss_pred             cHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHH
Q 048100           56 STKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEA  135 (161)
Q Consensus        56 ~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a  135 (161)
                      ....|+.|++.-+..++.+|.+|.||||-|+.+|+.++++.|+..|++                 .+.+-..||||||-|
T Consensus        75 rl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn-----------------~~a~T~~GWTPLhSA  137 (228)
T KOG0512|consen   75 RLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGAN-----------------KEAKTNEGWTPLHSA  137 (228)
T ss_pred             cHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCC-----------------cccccccCccchhhh
Confidence            578899999988888899999999999999999999999999999999                 566788999999999


Q ss_pred             HHcCCHHHHHHHHhCCCCCCCCcCC
Q 048100          136 VQSGSLDVVEILLGADPAFPYSANG  160 (161)
Q Consensus       136 ~~~~~~~~~~~Ll~~~~~~~~~~~~  160 (161)
                      ++-.+.+++-+||..|+||+..+++
T Consensus       138 ckWnN~~va~~LLqhgaDVnA~t~g  162 (228)
T KOG0512|consen  138 CKWNNFEVAGRLLQHGADVNAQTKG  162 (228)
T ss_pred             hcccchhHHHHHHhccCcccccccc
Confidence            9999999999999999999987765

>PHA02792 ankyrin-like protein; Provisional

Probab=99.67  E-value=3.3e-16  Score=119.76  Aligned_cols=117  Identities=15%  Similarity=0.054  Sum_probs=101.0

Q ss_pred             HHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccc----------------
Q 048100            7 EAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSL----------------   70 (161)
Q Consensus         7 ~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~----------------   70 (161)
                      .|+..|++|.|+.|+.+|++++.++..|.+|+|+|+  ...+       +.+++++|+++|++.                
T Consensus        78 ~~s~n~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~--~~~~-------~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~  148 (631)
T PHA02792         78 LCSDNIDIELLKLLISKGLEINSIKNGINIVEKYAT--TSNP-------NVDVFKLLLDKGIPTCSNIQYGYKIIIEQIT  148 (631)
T ss_pred             HHHhcccHHHHHHHHHcCCCcccccCCCCcceeEee--cCCC-------ChHHHHHHHHCCCCcccccccCcchhhhhcc
Confidence            466789999999999999999999999999999943  1223       599999999999751                


Q ss_pred             -------------------hhccCCCCCcHHHHHHHhC-------CHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhcc
Q 048100           71 -------------------LLQVNAKGDSPLHVAARYG-------HAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMK  124 (161)
Q Consensus        71 -------------------~~~~~~~~~t~l~~a~~~~-------~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~  124 (161)
                                         .+..+..|.||||+|+...       ..+++++|+++|++                 ++.+
T Consensus       149 ~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~-----------------~~~~  211 (631)
T PHA02792        149 RAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKE-----------------MRYY  211 (631)
T ss_pred             cccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCC-----------------cCcc
Confidence                               1234567999999999998       89999999999999                 7778


Q ss_pred             CCCCCcHhHHHHHcC--CHHHHHHHHh
Q 048100          125 NDEEDTALHEAVQSG--SLDVVEILLG  149 (161)
Q Consensus       125 ~~~g~t~l~~a~~~~--~~~~~~~Ll~  149 (161)
                      |..|.||||+|+.+.  ..+++++|+.
T Consensus       212 d~~g~t~l~~~~~~~~i~~ei~~~L~~  238 (631)
T PHA02792        212 TYREHTTLYYYVDKCDIKREIFDALFD  238 (631)
T ss_pred             CCCCChHHHHHHHcccchHHHHHHHHh
Confidence            999999999999999  8999999986

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.67  E-value=4.6e-16  Score=110.06  Aligned_cols=118  Identities=17%  Similarity=0.229  Sum_probs=98.4

Q ss_pred             hHHHHHHHc-----CChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCC
Q 048100            3 SDLYEAAAK-----GVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAK   77 (161)
Q Consensus         3 ~~l~~A~~~-----g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~   77 (161)
                      ||++.++..     .+.+.|.+|+.-+...-.....|+|.|++|+..   |       +.++++.|+..|++ ++.+|.+
T Consensus       304 tpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~gQTALMLAVSH---G-------r~d~vk~LLacgAd-VNiQDdD  372 (452)
T KOG0514|consen  304 TPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHGQTALMLAVSH---G-------RVDMVKALLACGAD-VNIQDDD  372 (452)
T ss_pred             cHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhcchhhhhhhhc---C-------cHHHHHHHHHccCC-CccccCC
Confidence            455555533     467889999866655555677899999996544   4       58999999999998 6899999


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHh-hhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHH
Q 048100           78 GDSPLHVAARYGHAAVVGALIEF-AEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILL  148 (161)
Q Consensus        78 ~~t~l~~a~~~~~~~~~~~Ll~~-g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  148 (161)
                      |.|+|+.||..||.+++++|+.. +++                 +.+.|.+|.|+|.+|...||.++.-+|-
T Consensus       373 GSTALMCA~EHGhkEivklLLA~p~cd-----------------~sLtD~DgSTAl~IAleagh~eIa~mlY  427 (452)
T KOG0514|consen  373 GSTALMCAAEHGHKEIVKLLLAVPSCD-----------------ISLTDVDGSTALSIALEAGHREIAVMLY  427 (452)
T ss_pred             ccHHHhhhhhhChHHHHHHHhccCccc-----------------ceeecCCCchhhhhHHhcCchHHHHHHH
Confidence            99999999999999999999965 455                 7889999999999999999999988876

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.66  E-value=5.3e-16  Score=83.35  Aligned_cols=54  Identities=37%  Similarity=0.677  Sum_probs=45.8

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHH
Q 048100           78 GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILL  148 (161)
Q Consensus        78 ~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  148 (161)
                      |.||+|+|++.|+.+++++|++.|.+                 ++.+|..|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~d-----------------in~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGAD-----------------INAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSG-----------------TT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCC-----------------CCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            68999999999999999999999988                 7888999999999999999999999996

...

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.64  E-value=5.2e-16  Score=118.33  Aligned_cols=132  Identities=27%  Similarity=0.294  Sum_probs=110.2

Q ss_pred             CChHHHHHHHcCChHHHHHHHhhh-------------CccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhC
Q 048100            1 MNSDLYEAAAKGVIEPFNQLAIDR-------------QLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETC   67 (161)
Q Consensus         1 ~~~~l~~A~~~g~~~~v~~ll~~~-------------~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~   67 (161)
                      |++-+..|++.|+++.+..+++..             ...+..|..|.|.||.|+   ..|       +.+++++|++..
T Consensus         3 k~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~---Lng-------~~~is~llle~e   72 (854)
T KOG0507|consen    3 KKQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAV---LNG-------QNQISKLLLDYE   72 (854)
T ss_pred             hhhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHH---hcC-------chHHHHHHhcch
Confidence            467889999999999999998542             223567889999999954   444       478999999976


Q ss_pred             ccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHH
Q 048100           68 PSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEIL  147 (161)
Q Consensus        68 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~L  147 (161)
                      +- +...+..|.+|||+|+..|+.+++++|+..+..                 ++..+..|.||||.|+..|+.+++.+|
T Consensus        73 a~-ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~-----------------~na~~~e~~tplhlaaqhgh~dvv~~L  134 (854)
T KOG0507|consen   73 AL-LDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDI-----------------LNAVNIENETPLHLAAQHGHLEVVFYL  134 (854)
T ss_pred             hh-hhhhhccCcceEEehhhcCcchHHHHHHhcccC-----------------CCcccccCcCccchhhhhcchHHHHHH
Confidence            65 566789999999999999999999999998855                 566788899999999999999999999


Q ss_pred             HhCCCCCCCCcCC
Q 048100          148 LGADPAFPYSANG  160 (161)
Q Consensus       148 l~~~~~~~~~~~~  160 (161)
                      +.+|+|...++|.
T Consensus       135 l~~~adp~i~nns  147 (854)
T KOG0507|consen  135 LKKNADPFIRNNS  147 (854)
T ss_pred             HhcCCCccccCcc
Confidence            9998888777764

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.62  E-value=6.7e-16  Score=83.45  Aligned_cols=56  Identities=38%  Similarity=0.563  Sum_probs=33.2

Q ss_pred             HHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHH
Q 048100           63 VLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEA  135 (161)
Q Consensus        63 Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a  135 (161)
                      |++.++..++..|..|.||||+|+.+|+.+++++|++.|++                 ++.+|..|+||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d-----------------~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGAD-----------------PNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT-------------------TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCC-----------------CCCCcCCCCCHHHhC
Confidence            46666445788899999999999999999999999999999                 888999999999987

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.61  E-value=2.1e-15  Score=98.21  Aligned_cols=91  Identities=14%  Similarity=0.031  Sum_probs=78.7

Q ss_pred             ChHHHHHHHcCChH---HHHHHHhhhCcccccc-CCCCcHHHHHHHHhhhcccccccccHHHHHHHHHh-CccchhccCC
Q 048100            2 NSDLYEAAAKGVIE---PFNQLAIDRQLGSLVI-HKKNSVLHVNIIASYTQNKEGESVSTKFVELVLET-CPSLLLQVNA   76 (161)
Q Consensus         2 ~~~l~~A~~~g~~~---~v~~ll~~~~~~~~~~-~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~-~~~~~~~~~~   76 (161)
                      .|+||.|+..|+.+   .++.|++.+.+.+.++ ..|.||||+|   +..+       ..+++++|+.. +.+ ++..+.
T Consensus        56 ~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A---~~~~-------~~~i~~~Ll~~~g~d-~n~~~~  124 (154)
T PHA02736         56 KQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIA---VYTQ-------NYELATWLCNQPGVN-MEILNY  124 (154)
T ss_pred             CEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHH---HHhC-------CHHHHHHHHhCCCCC-CccccC
Confidence            47899999999874   5788899999999888 4899999995   4444       48899999985 665 577899


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHhhhc
Q 048100           77 KGDSPLHVAARYGHAAVVGALIEFAEK  103 (161)
Q Consensus        77 ~~~t~l~~a~~~~~~~~~~~Ll~~g~~  103 (161)
                      .|.||||+|+..++.+++++|++.|++
T Consensus       125 ~g~tpL~~A~~~~~~~i~~~Ll~~ga~  151 (154)
T PHA02736        125 AFKTPYYVACERHDAKMMNILRAKGAQ  151 (154)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            999999999999999999999999976

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.61  E-value=3.6e-15  Score=86.16  Aligned_cols=82  Identities=26%  Similarity=0.300  Sum_probs=72.6

Q ss_pred             cHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHH
Q 048100           56 STKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEA  135 (161)
Q Consensus        56 ~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a  135 (161)
                      ..+-|+..+..|-++ +. -..|.+|||+|+-+|+.++++||+..|++                 ++-+|+.|.|||.-|
T Consensus        14 ~~DeVk~~v~~g~nV-n~-~~ggR~plhyAAD~GQl~ilefli~iGA~-----------------i~~kDKygITPLLsA   74 (117)
T KOG4214|consen   14 EIDEVKQSVNEGLNV-NE-IYGGRTPLHYAADYGQLSILEFLISIGAN-----------------IQDKDKYGITPLLSA   74 (117)
T ss_pred             cHHHHHHHHHccccH-HH-HhCCcccchHhhhcchHHHHHHHHHhccc-----------------cCCccccCCcHHHHH
Confidence            578899898888553 33 34889999999999999999999999999                 888899999999999


Q ss_pred             HHcCCHHHHHHHHhCCCCCCC
Q 048100          136 VQSGSLDVVEILLGADPAFPY  156 (161)
Q Consensus       136 ~~~~~~~~~~~Ll~~~~~~~~  156 (161)
                      +..||..||++||+.|++-+.
T Consensus        75 vwEGH~~cVklLL~~GAdrt~   95 (117)
T KOG4214|consen   75 VWEGHRDCVKLLLQNGADRTI   95 (117)
T ss_pred             HHHhhHHHHHHHHHcCcccce
Confidence            999999999999999998653

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.61  E-value=3.1e-14  Score=88.71  Aligned_cols=102  Identities=27%  Similarity=0.432  Sum_probs=87.4

Q ss_pred             cccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchh
Q 048100           29 LVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQE  108 (161)
Q Consensus        29 ~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~  108 (161)
                      ..+..|.||||+|   ...+       ..+++++|++.+... ...+..|.||+|+|+..++.+++++|+..|..     
T Consensus         2 ~~~~~g~t~l~~a---~~~~-------~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~-----   65 (126)
T cd00204           2 ARDEDGRTPLHLA---ASNG-------HLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD-----   65 (126)
T ss_pred             CcCcCCCCHHHHH---HHcC-------cHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-----
Confidence            3567899999995   4444       478999999998863 67789999999999999999999999999875     


Q ss_pred             hhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCc
Q 048100          109 LESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSA  158 (161)
Q Consensus       109 ~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  158 (161)
                                  ++..+..|.||+|+|+..++.+++++|+..+.+++..+
T Consensus        66 ------------~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~  103 (126)
T cd00204          66 ------------VNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARD  103 (126)
T ss_pred             ------------ccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccC
Confidence                        66678899999999999999999999999886665443

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.57  E-value=2.7e-14  Score=109.82  Aligned_cols=123  Identities=15%  Similarity=0.086  Sum_probs=106.5

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccc--------cC---------------CCCcHHHHHHHHhhhcccccccccHH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLV--------IH---------------KKNSVLHVNIIASYTQNKEGESVSTK   58 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~--------~~---------------~g~t~l~~a~~a~~~~~~~~~~~~~~   58 (161)
                      .|+||.|+.+.+.+.|+.|++.+++++.+        +.               -|+.||.+||..+          ..+
T Consensus       185 qSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~n----------q~e  254 (782)
T KOG3676|consen  185 QSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTN----------QPE  254 (782)
T ss_pred             cchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcC----------CHH
Confidence            48999999999999999999888877532        11               2789999974333          489


Q ss_pred             HHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHc
Q 048100           59 FVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQS  138 (161)
Q Consensus        59 ~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~  138 (161)
                      ++++|++++++ ++.+|..|+|.||..+.....++..+++++|+.  ..             ...+|..|-|||-+|++.
T Consensus       255 ivrlLl~~gAd-~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~--~l-------------~~v~N~qgLTPLtLAakl  318 (782)
T KOG3676|consen  255 IVRLLLAHGAD-PNAQDSNGNTVLHMLVIHFVTEMYDLALELGAN--AL-------------EHVRNNQGLTPLTLAAKL  318 (782)
T ss_pred             HHHHHHhcCCC-CCccccCCChHHHHHHHHHHHHHHHHHHhcCCC--cc-------------ccccccCCCChHHHHHHh
Confidence            99999999998 688899999999999999889999999999987  22             567999999999999999


Q ss_pred             CCHHHHHHHHhC
Q 048100          139 GSLDVVEILLGA  150 (161)
Q Consensus       139 ~~~~~~~~Ll~~  150 (161)
                      |..++.+.+++.
T Consensus       319 Gk~emf~~ile~  330 (782)
T KOG3676|consen  319 GKKEMFQHILER  330 (782)
T ss_pred             hhHHHHHHHHHh
Confidence            999999999976

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.56  E-value=3.3e-14  Score=111.51  Aligned_cols=87  Identities=22%  Similarity=0.209  Sum_probs=79.7

Q ss_pred             hHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHH
Q 048100            3 SDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPL   82 (161)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (161)
                      ..|+.|+..|+.+.++.|+..+.+++.+|..|.||||+   |+..|       +.+++++|++.|++ ++..|..|.|||
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~---Aa~~g-------~~eiv~~LL~~Gad-vn~~d~~G~TpL  152 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHI---ACANG-------HVQVVRVLLEFGAD-PTLLDKDGKTPL  152 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHH---HHHCC-------CHHHHHHHHHCCCC-CCCCCCCCCCHH
Confidence            35889999999999999999999999999999999999   45555       48999999999988 577899999999


Q ss_pred             HHHHHhCCHHHHHHHHHh
Q 048100           83 HVAARYGHAAVVGALIEF  100 (161)
Q Consensus        83 ~~a~~~~~~~~~~~Ll~~  100 (161)
                      |+|+..++.+++++|+++
T Consensus       153 h~A~~~g~~~iv~~Ll~~  170 (664)
T PTZ00322        153 ELAEENGFREVVQLLSRH  170 (664)
T ss_pred             HHHHHCCcHHHHHHHHhC
Confidence            999999999999999998

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.54  E-value=6.4e-14  Score=109.93  Aligned_cols=77  Identities=26%  Similarity=0.363  Sum_probs=72.5

Q ss_pred             cHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHH
Q 048100           56 STKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEA  135 (161)
Q Consensus        56 ~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a  135 (161)
                      ..+++++|++.|++ ++..|..|+||||+|+..|+.+++++|++.|++                 ++.+|..|.||||+|
T Consensus        94 ~~~~vk~LL~~Gad-in~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gad-----------------vn~~d~~G~TpLh~A  155 (664)
T PTZ00322         94 DAVGARILLTGGAD-PNCRDYDGRTPLHIACANGHVQVVRVLLEFGAD-----------------PTLLDKDGKTPLELA  155 (664)
T ss_pred             CHHHHHHHHHCCCC-CCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCC-----------------CCCCCCCCCCHHHHH
Confidence            48899999999987 577899999999999999999999999999998                 778899999999999


Q ss_pred             HHcCCHHHHHHHHhC
Q 048100          136 VQSGSLDVVEILLGA  150 (161)
Q Consensus       136 ~~~~~~~~~~~Ll~~  150 (161)
                      +..|+.+++++|+.+
T Consensus       156 ~~~g~~~iv~~Ll~~  170 (664)
T PTZ00322        156 EENGFREVVQLLSRH  170 (664)
T ss_pred             HHCCcHHHHHHHHhC
Confidence            999999999999988

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.49  E-value=1.6e-13  Score=73.65  Aligned_cols=54  Identities=28%  Similarity=0.445  Sum_probs=42.7

Q ss_pred             CCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHH
Q 048100           34 KNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALI   98 (161)
Q Consensus        34 g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll   98 (161)
                      |.||||+|   ++.|       ..+++++|++++.+ ++..|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A---~~~g-------~~~~~~~Ll~~~~d-in~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWA---ARSG-------NLEIVKLLLEHGAD-INAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHH---HHTT--------HHHHHHHHHTTSG-TT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHH---HHhC-------CHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            78999994   5555       48999999999988 5777999999999999999999999986

...

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.49  E-value=1.2e-13  Score=102.18  Aligned_cols=96  Identities=23%  Similarity=0.278  Sum_probs=82.1

Q ss_pred             CCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCc
Q 048100           34 KNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGV  113 (161)
Q Consensus        34 g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~  113 (161)
                      ...||-+-.-++.-|       -+++|+.++..-.+ ....+..|.|+||.|+..||.+||+||++.|++          
T Consensus       547 rfnPLaLLLDaaLeG-------EldlVq~~i~ev~D-pSqpNdEGITaLHNAiCaghyeIVkFLi~~gan----------  608 (752)
T KOG0515|consen  547 RFNPLALLLDAALEG-------ELDLVQRIIYEVTD-PSQPNDEGITALHNAICAGHYEIVKFLIEFGAN----------  608 (752)
T ss_pred             ecchHHHHHhhhhcc-------hHHHHHHHHHhhcC-CCCCCccchhHHhhhhhcchhHHHHHHHhcCCc----------
Confidence            346665544455555       48999999987665 466799999999999999999999999999999          


Q ss_pred             hhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCC
Q 048100          114 KSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAF  154 (161)
Q Consensus       114 ~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~  154 (161)
                             ++..|.+||||||+|+..++..+++.|++.|+-|
T Consensus       609 -------VNa~DSdGWTPLHCAASCNnv~~ckqLVe~Gaav  642 (752)
T KOG0515|consen  609 -------VNAADSDGWTPLHCAASCNNVPMCKQLVESGAAV  642 (752)
T ss_pred             -------ccCccCCCCchhhhhhhcCchHHHHHHHhccceE
Confidence                   7888999999999999999999999999998865

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.49  E-value=1.7e-14  Score=114.32  Aligned_cols=144  Identities=18%  Similarity=0.129  Sum_probs=125.5

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      +|+|-.||+.|+.|.+..|+.++..+.-+|+.|.+||.+|+.+|          +..+|+.|+.+.+++....|+.+.|+
T Consensus       758 ~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatag----------h~tvV~~llk~ha~veaQsdrtkdt~  827 (2131)
T KOG4369|consen  758 KTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAG----------HITVVQDLLKAHADVEAQSDRTKDTM  827 (2131)
T ss_pred             cccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccC----------chHHHHHHHhhhhhhhhhcccccCce
Confidence            68899999999999999999999999999999999999966555          57899999998888777889999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCch----------hhhcCchhHHHHHhhc--------cCCCCCcHhHHHHHcCCHHH
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQ----------ELESGVKSTTRYMLGM--------KNDEEDTALHEAVQSGSLDV  143 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~----------~~~~~~~~~~~~l~~~--------~~~~g~t~l~~a~~~~~~~~  143 (161)
                      |.+||..|+.+++++|+..|+....+          +..-|+..++..++..        ..+.|-.||.+|..+||...
T Consensus       828 lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~a  907 (2131)
T KOG4369|consen  828 LSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAA  907 (2131)
T ss_pred             EEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHH
Confidence            99999999999999999999986655          4566777788888743        34677889999999999999


Q ss_pred             HHHHHhCCCCCC
Q 048100          144 VEILLGADPAFP  155 (161)
Q Consensus       144 ~~~Ll~~~~~~~  155 (161)
                      ++.|++.|.|||
T Consensus       908 t~~ll~~gsdiN  919 (2131)
T KOG4369|consen  908 TLSLLQPGSDIN  919 (2131)
T ss_pred             HHHHhcccchhc
Confidence            999998888887

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.49  E-value=1.3e-12  Score=89.30  Aligned_cols=104  Identities=29%  Similarity=0.375  Sum_probs=89.6

Q ss_pred             ccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCC-----HHHHHHHHHhhh
Q 048100           28 SLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGH-----AAVVGALIEFAE  102 (161)
Q Consensus        28 ~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~-----~~~~~~Ll~~g~  102 (161)
                      ...+..+.+++|.   ++..+       ...++++++..+.++ +..+..|.||+|+|+..++     .+++++|++.|+
T Consensus        67 ~~~~~~~~~~~~~---~~~~~-------~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~  135 (235)
T COG0666          67 AARDLDGRLPLHS---AASKG-------DDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGA  135 (235)
T ss_pred             ccCCccccCHHHH---HHHcC-------cHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCC
Confidence            3455668899999   55555       367789999999986 8899999999999999999     999999999999


Q ss_pred             --cCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCc
Q 048100          103 --KQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSA  158 (161)
Q Consensus       103 --~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  158 (161)
                        +.                ...+|..|+||||+|+..|+.+++++|++.|++++.++
T Consensus       136 ~~~~----------------~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~  177 (235)
T COG0666         136 DLDV----------------NNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRN  177 (235)
T ss_pred             CCCC----------------ccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccc
Confidence              43                34579999999999999999999999999999988763

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.47  E-value=3e-13  Score=104.20  Aligned_cols=146  Identities=17%  Similarity=0.154  Sum_probs=93.0

Q ss_pred             HHHHHHHcCChHHHHHHHhhh---------CccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhcc
Q 048100            4 DLYEAAAKGVIEPFNQLAIDR---------QLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQV   74 (161)
Q Consensus         4 ~l~~A~~~g~~~~v~~ll~~~---------~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~   74 (161)
                      ++..|...+.++.+..++...         -..+.+...|.|.||.|+....-+       +.++++.|++..+..++..
T Consensus       104 ~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~-------~n~la~~LL~~~p~lind~  176 (782)
T KOG3676|consen  104 ALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDG-------HNELARVLLEIFPKLINDI  176 (782)
T ss_pred             hhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchh-------HHHHHHHHHHHhHHHhhhh
Confidence            456666777777766665433         233445677999999977654433       4789999999776655432


Q ss_pred             ----CCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHH---HhhccC-----CCCCcHhHHHHHcCCHH
Q 048100           75 ----NAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRY---MLGMKN-----DEEDTALHEAVQSGSLD  142 (161)
Q Consensus        75 ----~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~---l~~~~~-----~~g~t~l~~a~~~~~~~  142 (161)
                          ...|.||||+|+.+.+.++|++|++.|+++++.+.  |..=+.+.   .....|     -.|..||.+|+.-++.+
T Consensus       177 ~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~--G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~e  254 (782)
T KOG3676|consen  177 YTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARAC--GAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPE  254 (782)
T ss_pred             hhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhh--ccccCcccccccccccCCcceeeeccCchHHHHHcCCHH
Confidence                56799999999999999999999999999887720  00000000   001111     24455565555555666


Q ss_pred             HHHHHHhCCCCCCCCc
Q 048100          143 VVEILLGADPAFPYSA  158 (161)
Q Consensus       143 ~~~~Ll~~~~~~~~~~  158 (161)
                      ++++|++.|+|++.++
T Consensus       255 ivrlLl~~gAd~~aqD  270 (782)
T KOG3676|consen  255 IVRLLLAHGADPNAQD  270 (782)
T ss_pred             HHHHHHhcCCCCCccc
Confidence            6666655555555444

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.44  E-value=2.1e-13  Score=100.77  Aligned_cols=120  Identities=24%  Similarity=0.255  Sum_probs=101.8

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccch----------
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLL----------   71 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~----------   71 (161)
                      .|++|.++...+.++|++|++.+..++..|..|+||||.|+   ..|       +..++++|++.|++..          
T Consensus        74 lTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaa---scg-------~~~i~~~li~~gA~~~avNsdg~~P~  143 (527)
T KOG0505|consen   74 LTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAA---SCG-------YLNIVEYLIQHGANLLAVNSDGNMPY  143 (527)
T ss_pred             chhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhc---ccc-------cHHHHHHHHHhhhhhhhccCCCCCcc
Confidence            48999999999999999999999999999999999999954   333       3667777777665211          


Q ss_pred             ------------------------------------------------hccCCCCCcHHHHHHHhCCHHHHHHHHHhhhc
Q 048100           72 ------------------------------------------------LQVNAKGDSPLHVAARYGHAAVVGALIEFAEK  103 (161)
Q Consensus        72 ------------------------------------------------~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~  103 (161)
                                                                      ...+..|-|.||+|+..|-.+..++|++.|.+
T Consensus       144 dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~  223 (527)
T KOG0505|consen  144 DLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYS  223 (527)
T ss_pred             ccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccC
Confidence                                                            11123488999999999999999999999998


Q ss_pred             CCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHH
Q 048100          104 QPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILL  148 (161)
Q Consensus       104 ~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  148 (161)
                                       .+.+|.+||||||.|+.-|+.+++++|+
T Consensus       224 -----------------~~~~D~dgWtPlHAAA~Wg~~~~~elL~  251 (527)
T KOG0505|consen  224 -----------------VNIKDYDGWTPLHAAAHWGQEDACELLV  251 (527)
T ss_pred             -----------------cccccccCCCcccHHHHhhhHhHHHHHH
Confidence                             7888999999999999999999999776

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.40  E-value=2.9e-13  Score=107.61  Aligned_cols=146  Identities=21%  Similarity=0.159  Sum_probs=123.1

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhc-cCCCCCc
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQ-VNAKGDS   80 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~-~~~~~~t   80 (161)
                      ||+|-.||..|..+.|+.||..+....-++-..+|||.+|...+          ..++|+.|+..|..+... ..+-|-+
T Consensus       825 dt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sgg----------y~~iI~~llS~GseInSrtgSklgis  894 (2131)
T KOG4369|consen  825 DTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGG----------YTKIIHALLSSGSEINSRTGSKLGIS  894 (2131)
T ss_pred             CceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcc----------hHHHHHHHhhcccccccccccccCcc
Confidence            56777888888889999998888888888888999998844333          588999999999875332 2467889


Q ss_pred             HHHHHHHhCCHHHHHHHHHhhhcCCch-----------hhhcCchhHHHHHh------hccCCCCCcHhHHHHHcCCHHH
Q 048100           81 PLHVAARYGHAAVVGALIEFAEKQPGQ-----------ELESGVKSTTRYML------GMKNDEEDTALHEAVQSGSLDV  143 (161)
Q Consensus        81 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~-----------~~~~~~~~~~~~l~------~~~~~~g~t~l~~a~~~~~~~~  143 (161)
                      ||+.|...|+...++.|++.|.++++.           +...|+.+++.+|+      ..+-+.|.|||..++..|..++
T Consensus       895 PLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdv  974 (2131)
T KOG4369|consen  895 PLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDV  974 (2131)
T ss_pred             hhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCcccc
Confidence            999999999999999999999998777           46788888888886      4677899999999999999999


Q ss_pred             HHHHHhCCCCCCCC
Q 048100          144 VEILLGADPAFPYS  157 (161)
Q Consensus       144 ~~~Ll~~~~~~~~~  157 (161)
                      -.+|+.+|+|+++.
T Consensus       975 g~~li~~gad~nas  988 (2131)
T KOG4369|consen  975 GNLLIAAGADTNAS  988 (2131)
T ss_pred             chhhhhcccccccC
Confidence            99999999998854

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.36  E-value=1.3e-12  Score=70.52  Aligned_cols=55  Identities=22%  Similarity=0.190  Sum_probs=29.7

Q ss_pred             HHhhh-CccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHHHHH
Q 048100           20 LAIDR-QLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVA   85 (161)
Q Consensus        20 ll~~~-~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a   85 (161)
                      |++.+ .+.+..|..|.||||+|   +..|       +.+++++|++.+.+ ++.+|..|+||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A---~~~g-------~~~~v~~Ll~~g~d-~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWA---ARYG-------HSEVVRLLLQNGAD-PNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHH---HHHT--------HHHHHHHHHCT---TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHH---HHcC-------cHHHHHHHHHCcCC-CCCCcCCCCCHHHhC
Confidence            34555 77889999999999995   4455       48999999988877 688899999999997

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.25  E-value=5.2e-11  Score=82.55  Aligned_cols=84  Identities=27%  Similarity=0.247  Sum_probs=72.5

Q ss_pred             cHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHH
Q 048100           56 STKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEA  135 (161)
Q Consensus        56 ~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a  135 (161)
                      ..+-...|++. ....+..|..|.|+|..|+..|+.+++++|++.|++++..                ++..+-|||++|
T Consensus        24 dt~~a~~LLs~-vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~----------------qhg~~YTpLmFA   86 (396)
T KOG1710|consen   24 DTEAALALLST-VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDK----------------QHGTLYTPLMFA   86 (396)
T ss_pred             cHHHHHHHHHH-hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcc----------------cccccccHHHHH
Confidence            35666667764 3336788999999999999999999999999999997666                788999999999


Q ss_pred             HHcCCHHHHHHHHhCCCCCCC
Q 048100          136 VQSGSLDVVEILLGADPAFPY  156 (161)
Q Consensus       136 ~~~~~~~~~~~Ll~~~~~~~~  156 (161)
                      +.+|+.++.++|+++|+....
T Consensus        87 ALSGn~dvcrllldaGa~~~~  107 (396)
T KOG1710|consen   87 ALSGNQDVCRLLLDAGARMYL  107 (396)
T ss_pred             HHcCCchHHHHHHhccCcccc
Confidence            999999999999999987543

>PF13606 Ank_3: Ankyrin repeat

Probab=99.20  E-value=3.1e-11  Score=56.35  Aligned_cols=29  Identities=28%  Similarity=0.479  Sum_probs=27.7

Q ss_pred             CCCcHhHHHHHcCCHHHHHHHHhCCCCCC
Q 048100          127 EEDTALHEAVQSGSLDVVEILLGADPAFP  155 (161)
Q Consensus       127 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~  155 (161)
                      +|+||||+|+..|+.+++++|+++|+|++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            58999999999999999999999999986

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=99.14  E-value=1e-10  Score=56.03  Aligned_cols=33  Identities=33%  Similarity=0.465  Sum_probs=31.0

Q ss_pred             CCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCcC
Q 048100          127 EEDTALHEAVQSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       127 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                      +|.||||+|+..|+.+++++|++.|++++.++|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            589999999999999999999999999998765

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=99.13  E-value=4.6e-10  Score=84.35  Aligned_cols=118  Identities=23%  Similarity=0.271  Sum_probs=101.7

Q ss_pred             HHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCcc-chhccCCCCCcHHH
Q 048100            5 LYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPS-LLLQVNAKGDSPLH   83 (161)
Q Consensus         5 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~-~~~~~~~~~~t~l~   83 (161)
                      ++.|+..+++-.++..-..+...-.++.+..+.||+|   +..|+       -++|+|++++++. ++...+..|.|+||
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a---~~tg~-------~eivkyildh~p~elld~~de~get~lh  939 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYA---AKTGN-------GEIVKYILDHGPSELLDMADETGETALH  939 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHH---HhcCC-------hHHHHHHHhcCCHHHHHHHhhhhhHHHH
Confidence            6788888887777766556667777899999999994   45554       7899999999875 34566899999999


Q ss_pred             HHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHh
Q 048100           84 VAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLG  149 (161)
Q Consensus        84 ~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  149 (161)
                      -|+..++..++++|++.|+.                 +...|..|.||-.-|-+.|..+++.||-.
T Consensus       940 kaa~~~~r~vc~~lvdagas-----------------l~ktd~kg~tp~eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  940 KAACQRNRAVCQLLVDAGAS-----------------LRKTDSKGKTPQERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             HHHHhcchHHHHHHHhcchh-----------------heecccCCCChHHHHHhcCCchHHHHHhh
Confidence            99999999999999999998                 78889999999999999999999999963

>PF13606 Ank_3: Ankyrin repeat

Probab=99.05  E-value=3.2e-10  Score=52.90  Aligned_cols=29  Identities=34%  Similarity=0.607  Sum_probs=26.7

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHhhhcCC
Q 048100           77 KGDSPLHVAARYGHAAVVGALIEFAEKQP  105 (161)
Q Consensus        77 ~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~  105 (161)
                      +|+||||+|++.|+.+++++|+++|++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            58999999999999999999999998743

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.02  E-value=4.4e-10  Score=82.62  Aligned_cols=96  Identities=22%  Similarity=0.168  Sum_probs=79.4

Q ss_pred             ccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchhh
Q 048100           30 VIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQEL  109 (161)
Q Consensus        30 ~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~  109 (161)
                      .+..+...+++   +++.|+       +..++-+.-.|.+ +...|.+..|+||+|+-.|+.++++||++.....+..  
T Consensus       502 ~~~~~~i~~~~---aa~~GD-------~~alrRf~l~g~D-~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~--  568 (622)
T KOG0506|consen  502 RENDTVINVMY---AAKNGD-------LSALRRFALQGMD-LETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDP--  568 (622)
T ss_pred             ccccchhhhhh---hhhcCC-------HHHHHHHHHhccc-ccccccccchhheeecccCceeHHHHHHHHHcCCCCh--
Confidence            34456678888   556664       7777777777777 6788999999999999999999999999987654444  


Q ss_pred             hcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCC
Q 048100          110 ESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADP  152 (161)
Q Consensus       110 ~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~  152 (161)
                                    +|.+|+|||.-|...+|.+++++|-++..
T Consensus       569 --------------kDRw~rtPlDdA~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  569 --------------KDRWGRTPLDDAKHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             --------------hhccCCCcchHhHhcCcHHHHHHHHHHhc
Confidence                          89999999999999999999999986543

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.02  E-value=1.6e-10  Score=89.97  Aligned_cols=95  Identities=18%  Similarity=0.286  Sum_probs=78.2

Q ss_pred             HHHHHHh--hhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHH
Q 048100           16 PFNQLAI--DRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAV   93 (161)
Q Consensus        16 ~v~~ll~--~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~   93 (161)
                      .++-++.  .+...+++|..|.|.||+++..+          ..+++++|+++|.++.......|+||||-|..+|+.+|
T Consensus        32 qlk~F~~k~c~n~anikD~~GR~alH~~~S~~----------k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idc  101 (1267)
T KOG0783|consen   32 QLKGFSEKSCQNLANIKDRYGRTALHIAVSEN----------KNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDC  101 (1267)
T ss_pred             HHHHHHHHhhhhhhhHHHhhccceeeeeeccc----------hhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHH
Confidence            3444432  23456889999999999954333          47899999999999655556789999999999999999


Q ss_pred             HHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHH
Q 048100           94 VGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQ  137 (161)
Q Consensus        94 ~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~  137 (161)
                      +-.|+.+|..                 +.++|++|..||.+-.+
T Consensus       102 a~lLL~~g~S-----------------L~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  102 ASLLLSKGRS-----------------LRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             HHHHHhcCCc-----------------eEEecccCCCHHHHHhh
Confidence            9999999987                 88999999999987766

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.96  E-value=3e-10  Score=88.47  Aligned_cols=83  Identities=19%  Similarity=0.322  Sum_probs=72.2

Q ss_pred             HHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccC-CCCCcHhHHHHH
Q 048100           59 FVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKN-DEEDTALHEAVQ  137 (161)
Q Consensus        59 ~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~g~t~l~~a~~  137 (161)
                      +-.|+-..|....++.|..|.|+||.++..+...++++|+++|.+                 +..+| ..|+||||-|..
T Consensus        33 lk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGid-----------------v~vqD~ESG~taLHRaiy   95 (1267)
T KOG0783|consen   33 LKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGID-----------------VFVQDEESGYTALHRAIY   95 (1267)
T ss_pred             HHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCce-----------------eeeccccccchHhhHhhh
Confidence            445556677776788999999999999999999999999999999                 66666 689999999999


Q ss_pred             cCCHHHHHHHHhCCCCCCCCc
Q 048100          138 SGSLDVVEILLGADPAFPYSA  158 (161)
Q Consensus       138 ~~~~~~~~~Ll~~~~~~~~~~  158 (161)
                      .|+++|+.+||.+|..+...+
T Consensus        96 yG~idca~lLL~~g~SL~i~D  116 (1267)
T KOG0783|consen   96 YGNIDCASLLLSKGRSLRIKD  116 (1267)
T ss_pred             hchHHHHHHHHhcCCceEEec
Confidence            999999999999998776544

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.95  E-value=4.6e-09  Score=77.75  Aligned_cols=79  Identities=23%  Similarity=0.254  Sum_probs=70.2

Q ss_pred             ccHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHH
Q 048100           55 VSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHE  134 (161)
Q Consensus        55 ~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~  134 (161)
                      +.+++.--|+..|++........|.||||+|++.|+.-.+++|.-+|++                 +...|..|+||+.+
T Consensus       144 ~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD-----------------~~a~d~~GmtP~~~  206 (669)
T KOG0818|consen  144 GNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGAD-----------------PGAQDSSGMTPVDY  206 (669)
T ss_pred             ccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCC-----------------CCCCCCCCCcHHHH
Confidence            3588888899999987666677899999999999999999999999999                 66779999999999


Q ss_pred             HHHcCCHHHHHHHHhC
Q 048100          135 AVQSGSLDVVEILLGA  150 (161)
Q Consensus       135 a~~~~~~~~~~~Ll~~  150 (161)
                      |...||-++++-|++.
T Consensus       207 AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  207 ARQGGHHELAERLVEI  222 (669)
T ss_pred             HHhcCchHHHHHHHHH
Confidence            9999999998877743

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.90  E-value=3.3e-09  Score=50.68  Aligned_cols=29  Identities=34%  Similarity=0.629  Sum_probs=26.8

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHhhhcCC
Q 048100           77 KGDSPLHVAARYGHAAVVGALIEFAEKQP  105 (161)
Q Consensus        77 ~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~  105 (161)
                      +|.||||+|+.+|+.+++++|+++|+++.
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~   29 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADIN   29 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCC
Confidence            58999999999999999999999999843

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.89  E-value=2.3e-09  Score=78.93  Aligned_cols=89  Identities=21%  Similarity=0.241  Sum_probs=80.1

Q ss_pred             HHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHHH
Q 048100            4 DLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLH   83 (161)
Q Consensus         4 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~   83 (161)
                      +++.|+..|++..++++.-.+.+.+..|.+..|.||+|   +.-|       +.++++||++.+....+.+|++|.|||-
T Consensus       509 ~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvA---AaEG-------~v~v~kfl~~~~kv~~~~kDRw~rtPlD  578 (622)
T KOG0506|consen  509 NVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVA---AAEG-------HVEVVKFLLNACKVDPDPKDRWGRTPLD  578 (622)
T ss_pred             hhhhhhhcCCHHHHHHHHHhcccccccccccchhheee---cccC-------ceeHHHHHHHHHcCCCChhhccCCCcch
Confidence            57899999999999999889999999999999999994   4444       5889999999888777889999999999


Q ss_pred             HHHHhCCHHHHHHHHHhhh
Q 048100           84 VAARYGHAAVVGALIEFAE  102 (161)
Q Consensus        84 ~a~~~~~~~~~~~Ll~~g~  102 (161)
                      =|.+.+|.+++++|-+.-.
T Consensus       579 dA~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  579 DAKHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             HhHhcCcHHHHHHHHHHhc
Confidence            9999999999999988744

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.84  E-value=2.1e-08  Score=74.81  Aligned_cols=113  Identities=16%  Similarity=0.122  Sum_probs=89.2

Q ss_pred             hHHHHHHHcCChHHHHHHHhh--hCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCc
Q 048100            3 SDLYEAAAKGVIEPFNQLAID--RQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDS   80 (161)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~--~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t   80 (161)
                      .++|+++...+.+.+.+.+..  ...++..|..|.||||+   +..+|+       ...++.|+..+++ +..++..||+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhl---AV~Lg~-------~~~a~~Ll~a~Ad-v~~kN~~gWs   90 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHL---AVRLGH-------VEAARILLSAGAD-VSIKNNEGWS   90 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHH---HHHhcC-------HHHHHHHHhcCCC-cccccccccc
Confidence            358999999988888775432  34567889999999999   556764       8899999999987 4678999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCC
Q 048100           81 PLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKND  126 (161)
Q Consensus        81 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~  126 (161)
                      |||-|+.+|+..++..++.+........-+.+...+++.+..+.|.
T Consensus        91 ~L~EAv~~g~~q~i~~vlr~~~~q~~~~~~~~~p~ll~~l~~~~DF  136 (560)
T KOG0522|consen   91 PLHEAVSTGNEQIITEVLRHLKYQAWEKWERRLPRLLAKLSEMPDF  136 (560)
T ss_pred             HHHHHHHcCCHHHHHHHHHHhHHHHHHHHHhcchHHHHHHHhCccc
Confidence            9999999999999888877765544444567777777777776664

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.82  E-value=1.6e-08  Score=75.44  Aligned_cols=88  Identities=28%  Similarity=0.447  Sum_probs=69.6

Q ss_pred             cHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchh
Q 048100           36 SVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKS  115 (161)
Q Consensus        36 t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~  115 (161)
                      .|+|+   +.+...      .-++.+.|...-...+...|..|.||||+|+..|+...++.|+..|++            
T Consensus        22 ~~lh~---~~~~~~------~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad------------   80 (560)
T KOG0522|consen   22 KPLHW---AVVTTD------SDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD------------   80 (560)
T ss_pred             cccch---hhhccc------hhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC------------
Confidence            45888   444433      233455555443334567889999999999999999999999999998            


Q ss_pred             HHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHh
Q 048100          116 TTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLG  149 (161)
Q Consensus       116 ~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  149 (161)
                           +..+|..|++|||.|+..|+.+++.-++.
T Consensus        81 -----v~~kN~~gWs~L~EAv~~g~~q~i~~vlr  109 (560)
T KOG0522|consen   81 -----VSIKNNEGWSPLHEAVSTGNEQIITEVLR  109 (560)
T ss_pred             -----ccccccccccHHHHHHHcCCHHHHHHHHH
Confidence                 88899999999999999999988877763

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.76  E-value=5.8e-08  Score=73.27  Aligned_cols=81  Identities=25%  Similarity=0.284  Sum_probs=68.8

Q ss_pred             cHHHHHHHHHhCccch---hccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHh
Q 048100           56 STKFVELVLETCPSLL---LQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTAL  132 (161)
Q Consensus        56 ~~~~v~~Ll~~~~~~~---~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l  132 (161)
                      ++..+-.|+.+|....   ...+.+|.|+||+||+.|+..+.++|+-+|.+                 ...+|..|+|+|
T Consensus       636 Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~d-----------------v~~rda~g~t~l  698 (749)
T KOG0705|consen  636 DLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVD-----------------VMARDAHGRTAL  698 (749)
T ss_pred             HHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCcc-----------------ceecccCCchhh
Confidence            4666777888775421   23466789999999999999999999999999                 667899999999


Q ss_pred             HHHHHcCCHHHHHHHHhCCCC
Q 048100          133 HEAVQSGSLDVVEILLGADPA  153 (161)
Q Consensus       133 ~~a~~~~~~~~~~~Ll~~~~~  153 (161)
                      .+|...|..+|+..|+.+|.-
T Consensus       699 ~yar~a~sqec~d~llq~gcp  719 (749)
T KOG0705|consen  699 FYARQAGSQECIDVLLQYGCP  719 (749)
T ss_pred             hhHhhcccHHHHHHHHHcCCC
Confidence            999999999999999998864

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.71  E-value=6.6e-08  Score=71.78  Aligned_cols=88  Identities=22%  Similarity=0.216  Sum_probs=74.0

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccC-CCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCc
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIH-KKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDS   80 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~-~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t   80 (161)
                      +..||-.++.|+.+..-+|+.-|++.|..+. .|.||||+|+.++          ...-+++|+-.|++ +...|.+|.|
T Consensus       134 srQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~G----------q~~Q~ElL~vYGAD-~~a~d~~Gmt  202 (669)
T KOG0818|consen  134 SKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAG----------QILQAELLAVYGAD-PGAQDSSGMT  202 (669)
T ss_pred             HHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhcc----------chhhhhHHhhccCC-CCCCCCCCCc
Confidence            4578999999999999999989999988765 6999999966555          35578889999998 5777999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHh
Q 048100           81 PLHVAARYGHAAVVGALIEF  100 (161)
Q Consensus        81 ~l~~a~~~~~~~~~~~Ll~~  100 (161)
                      |+-+|...||-++.+-|++.
T Consensus       203 P~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  203 PVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             HHHHHHhcCchHHHHHHHHH
Confidence            99999999998877766655

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.68  E-value=1.3e-07  Score=74.23  Aligned_cols=128  Identities=16%  Similarity=0.107  Sum_probs=97.1

Q ss_pred             hHHHHHHHcCChHHHHHHHhhhC----ccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCC
Q 048100            3 SDLYEAAAKGVIEPFNQLAIDRQ----LGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKG   78 (161)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~----~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~   78 (161)
                      ..+..|++.|+...|+..++...    +.+..|.-|.+.|+.|+..          +..+++++|++.....        
T Consensus        27 ~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~n----------enle~~eLLl~~~~~~--------   88 (822)
T KOG3609|consen   27 KGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDN----------ENLELQELLLDTSSEE--------   88 (822)
T ss_pred             HHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceeccccc----------ccHHHHHHHhcCcccc--------
Confidence            46889999999999999986543    3577899999999995421          2589999999986542        


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHh-hccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCC
Q 048100           79 DSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYML-GMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPY  156 (161)
Q Consensus        79 ~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~  156 (161)
                      ..+|-+|+..|..++++.++.+-......    +.    ...- ...-..+.||+.+|+..+++||+++|+..|+.+..
T Consensus        89 gdALL~aI~~~~v~~VE~ll~~~~~~~~~----~~----~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen   89 GDALLLAIAVGSVPLVELLLVHFVDAPYL----ER----SGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             chHHHHHHHHHHHHHHHHHHhcccccchh----cc----ccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence            46899999999999999999875442111    00    0000 12335779999999999999999999999988763

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.67  E-value=1e-07  Score=71.98  Aligned_cols=90  Identities=17%  Similarity=0.201  Sum_probs=76.1

Q ss_pred             hHHHHHHHcCChHHHHHHHhhhCcc----ccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCC
Q 048100            3 SDLYEAAAKGVIEPFNQLAIDRQLG----SLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKG   78 (161)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~----~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~   78 (161)
                      ..|+-|+...++..+-.|+.++.-.    ..-+.+|.|+||+   ++..|+       ..+.++|+..|++ ....|..|
T Consensus       626 qqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHL---a~~~gn-------Vvl~QLLiWyg~d-v~~rda~g  694 (749)
T KOG0705|consen  626 QQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHL---AARKGN-------VVLAQLLIWYGVD-VMARDAHG  694 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhh---hhhhcc-------hhHHHHHHHhCcc-ceecccCC
Confidence            3578899999999999998776433    2345678999999   667775       7889999999998 46779999


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHhhhc
Q 048100           79 DSPLHVAARYGHAAVVGALIEFAEK  103 (161)
Q Consensus        79 ~t~l~~a~~~~~~~~~~~Ll~~g~~  103 (161)
                      .|+|.||.+.|..+|+..|+++|+.
T Consensus       695 ~t~l~yar~a~sqec~d~llq~gcp  719 (749)
T KOG0705|consen  695 RTALFYARQAGSQECIDVLLQYGCP  719 (749)
T ss_pred             chhhhhHhhcccHHHHHHHHHcCCC
Confidence            9999999999999999999999975

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.54  E-value=2.6e-07  Score=69.95  Aligned_cols=82  Identities=24%  Similarity=0.316  Sum_probs=69.3

Q ss_pred             HHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcC
Q 048100           60 VELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSG  139 (161)
Q Consensus        60 v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~  139 (161)
                      ++.+...|.+ +..++.+..|-||+|+..|+.++|++++++|-.               .++++.|..|.|+||.|+..+
T Consensus       882 lqE~h~~gg~-ll~~~~~~~sllh~a~~tg~~eivkyildh~p~---------------elld~~de~get~lhkaa~~~  945 (1004)
T KOG0782|consen  882 LQETHLNGGS-LLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPS---------------ELLDMADETGETALHKAACQR  945 (1004)
T ss_pred             HHHHHhcCCc-eEeeCcchhhHHHHHHhcCChHHHHHHHhcCCH---------------HHHHHHhhhhhHHHHHHHHhc
Confidence            3444455666 456788888999999999999999999999854               458899999999999999999


Q ss_pred             CHHHHHHHHhCCCCCCCC
Q 048100          140 SLDVVEILLGADPAFPYS  157 (161)
Q Consensus       140 ~~~~~~~Ll~~~~~~~~~  157 (161)
                      +..+..+|+++|+.+.-.
T Consensus       946 ~r~vc~~lvdagasl~kt  963 (1004)
T KOG0782|consen  946 NRAVCQLLVDAGASLRKT  963 (1004)
T ss_pred             chHHHHHHHhcchhheec
Confidence            999999999999987543

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.50  E-value=1.2e-07  Score=75.86  Aligned_cols=126  Identities=17%  Similarity=0.029  Sum_probs=93.4

Q ss_pred             hHHHHHHHcCChHHHHHHHhh-hCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            3 SDLYEAAAKGVIEPFNQLAID-RQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      +-+|.++..+..-.++.+++. +......|..|...+|++   +..|        .++.-+++......+..+|..||||
T Consensus       576 lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfc---a~lg--------~ewA~ll~~~~~~ai~i~D~~G~tp  644 (975)
T KOG0520|consen  576 LLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFC---AALG--------YEWAFLPISADGVAIDIRDRNGWTP  644 (975)
T ss_pred             HHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHh---hhcC--------CceeEEEEeecccccccccCCCCcc
Confidence            457888888888888888875 677778888999999983   2332        3444444443233368899999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhC
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGA  150 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  150 (161)
                      ||||+.+|+..++..|++.|++....           ...+-....|.|+-..|..+|+..+.-||-++
T Consensus       645 L~wAa~~G~e~l~a~l~~lga~~~~~-----------tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  645 LHWAAFRGREKLVASLIELGADPGAV-----------TDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             cchHhhcCHHHHHHHHHHhccccccc-----------cCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            99999999999999999998874433           00123345699999999999999988887643

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.49  E-value=4.6e-07  Score=59.57  Aligned_cols=73  Identities=22%  Similarity=0.198  Sum_probs=63.4

Q ss_pred             hhccCCCCCcHHHHHHHhCCHHHHHHHHHhh-hcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHh
Q 048100           71 LLQVNAKGDSPLHVAARYGHAAVVGALIEFA-EKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLG  149 (161)
Q Consensus        71 ~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  149 (161)
                      ++..|..|||+++.|+..|..+.+.+|+.+| +.                 +...|..|.+++.+|-+.|+.+.++.|.+
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~-----------------vgv~d~ssldaaqlaek~g~~~fvh~lfe   67 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGVAF-----------------VGVTDESSLDAAQLAEKGGAQAFVHSLFE   67 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhccCccc-----------------ccccccccchHHHHHHhcChHHHHHHHHH
Confidence            5778999999999999999999999999999 44                 56689999999999999999999999998


Q ss_pred             CCCCCCCCcCC
Q 048100          150 ADPAFPYSANG  160 (161)
Q Consensus       150 ~~~~~~~~~~~  160 (161)
                      +..+-...+|.
T Consensus        68 ~~~ets~p~ns   78 (223)
T KOG2384|consen   68 NDRETSHPMNS   78 (223)
T ss_pred             HhccCCCcccC
Confidence            76655544443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.23  E-value=2e-05  Score=57.29  Aligned_cols=55  Identities=25%  Similarity=0.180  Sum_probs=39.0

Q ss_pred             HHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCcc
Q 048100            5 LYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPS   69 (161)
Q Consensus         5 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~   69 (161)
                      |.+||+.|+++.|+.|++.+..+|.+|.-...||.+   |+..|       +.+++++|+++|+-
T Consensus        40 lceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~l---AsLcG-------He~vvklLLenGAi   94 (516)
T KOG0511|consen   40 LCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYL---ASLCG-------HEDVVKLLLENGAI   94 (516)
T ss_pred             HHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHH---HHHcC-------cHHHHHHHHHcCCc
Confidence            566777777777777777777777777777777777   44444       36777777777763

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.21  E-value=3.4e-06  Score=61.13  Aligned_cols=60  Identities=25%  Similarity=0.232  Sum_probs=55.1

Q ss_pred             CcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCC
Q 048100           79 DSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFP  155 (161)
Q Consensus        79 ~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~  155 (161)
                      .--|..||+.|+.+.++.|++.|..                 ++..|.....||.+|...||..+|++|++.|+-..
T Consensus        37 f~elceacR~GD~d~v~~LVetgvn-----------------VN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~   96 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVN-----------------VNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICS   96 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCC-----------------cchhhcccccHHHHHHHcCcHHHHHHHHHcCCccc
Confidence            4478899999999999999999988                 88899999999999999999999999999998543

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.02  E-value=2.3e-05  Score=51.75  Aligned_cols=69  Identities=14%  Similarity=0.043  Sum_probs=59.6

Q ss_pred             CccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhc
Q 048100           25 QLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEK  103 (161)
Q Consensus        25 ~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~  103 (161)
                      ..++.+|..|+|+++.|+..+          ..+.+.+|+.+|+.-+...|..+.+++.+|-+.|+.++++.|.+.-.+
T Consensus         3 ~~in~rD~fgWTalmcaa~eg----------~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEG----------SNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             CCccchhhhcchHHHHHhhhc----------chhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            467889999999999965444          478999999999665788899999999999999999999999988554

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.93  E-value=1.3e-05  Score=64.35  Aligned_cols=89  Identities=26%  Similarity=0.366  Sum_probs=75.3

Q ss_pred             CCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhc
Q 048100           32 HKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELES  111 (161)
Q Consensus        32 ~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~  111 (161)
                      ..|.++||.|+   ..+       ..-++++|++.|++ ++..|..|.||+|.+...|+...+..|+++|++        
T Consensus       654 ~~~~s~lh~a~---~~~-------~~~~~e~ll~~ga~-vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~--------  714 (785)
T KOG0521|consen  654 CIGCSLLHVAV---GTG-------DSGAVELLLQNGAD-VNALDSKGRTPLHHATASGHTSIACLLLKRGAD--------  714 (785)
T ss_pred             hcccchhhhhh---ccc-------hHHHHHHHHhcCCc-chhhhccCCCcchhhhhhcccchhhhhcccccc--------
Confidence            45789999944   333       46789999999998 688899999999999999999999999999998        


Q ss_pred             CchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHH
Q 048100          112 GVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILL  148 (161)
Q Consensus       112 ~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  148 (161)
                               .+..+.+|.+|+++|....+.+.+-++.
T Consensus       715 ---------~~a~~~~~~~~l~~a~~~~~~d~~~l~~  742 (785)
T KOG0521|consen  715 ---------PNAFDPDGKLPLDIAMEAANADIVLLLR  742 (785)
T ss_pred             ---------ccccCccCcchhhHHhhhccccHHHHHh
Confidence                     6677899999999998877777665554

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.89  E-value=1.2e-05  Score=64.83  Aligned_cols=36  Identities=19%  Similarity=0.168  Sum_probs=32.3

Q ss_pred             hhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCC
Q 048100          121 LGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPY  156 (161)
Q Consensus       121 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~  156 (161)
                      ++.+|..|+||||||+..|+..++.-|.+.|++..+
T Consensus       634 i~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~  669 (975)
T KOG0520|consen  634 IDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGA  669 (975)
T ss_pred             cccccCCCCcccchHhhcCHHHHHHHHHHhcccccc
Confidence            688999999999999999999999999987776554

>smart00248 ANK ankyrin repeats

Probab=97.86  E-value=4e-05  Score=34.17  Aligned_cols=29  Identities=34%  Similarity=0.571  Sum_probs=26.3

Q ss_pred             CCCcHhHHHHHcCCHHHHHHHHhCCCCCC
Q 048100          127 EEDTALHEAVQSGSLDVVEILLGADPAFP  155 (161)
Q Consensus       127 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~  155 (161)
                      .|.||+|+++..++.+++++|+..+.+++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            47899999999999999999999988764

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.85  E-value=1.9e-05  Score=63.29  Aligned_cols=86  Identities=21%  Similarity=0.137  Sum_probs=72.0

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      .++||.|+..|..-.++.|++.+...+.+|..|.+|+|.+...   |       +......+++++++ .+..+..|.+|
T Consensus       657 ~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~---g-------~~~~~~~ll~~~a~-~~a~~~~~~~~  725 (785)
T KOG0521|consen  657 CSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATAS---G-------HTSIACLLLKRGAD-PNAFDPDGKLP  725 (785)
T ss_pred             cchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhh---c-------ccchhhhhcccccc-ccccCccCcch
Confidence            4789999999999999999999999999999999999995443   3       36678888888887 57779999999


Q ss_pred             HHHHHHhCCHHHHHHHH
Q 048100           82 LHVAARYGHAAVVGALI   98 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll   98 (161)
                      +.+|....+.+.+-++.
T Consensus       726 l~~a~~~~~~d~~~l~~  742 (785)
T KOG0521|consen  726 LDIAMEAANADIVLLLR  742 (785)
T ss_pred             hhHHhhhccccHHHHHh
Confidence            99998776666555443

>smart00248 ANK ankyrin repeats

Probab=97.52  E-value=0.00021  Score=31.63  Aligned_cols=27  Identities=37%  Similarity=0.615  Sum_probs=24.5

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHhhhc
Q 048100           77 KGDSPLHVAARYGHAAVVGALIEFAEK  103 (161)
Q Consensus        77 ~~~t~l~~a~~~~~~~~~~~Ll~~g~~  103 (161)
                      .|.||+|+|+..++.++++.|++.+.+
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            478999999999999999999998865

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.33  E-value=0.00055  Score=51.60  Aligned_cols=63  Identities=19%  Similarity=0.084  Sum_probs=50.4

Q ss_pred             HHHHHHHHHhCccchhc-----cCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcH
Q 048100           57 TKFVELVLETCPSLLLQ-----VNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTA  131 (161)
Q Consensus        57 ~~~v~~Ll~~~~~~~~~-----~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~  131 (161)
                      ...|++|.+++.+....     .+..-.|+||+|+.+|..+++.+||+.|++                 ...+|..|.||
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~D-----------------p~~kd~~Grtp  466 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCD-----------------PSTKDGAGRTP  466 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCC-----------------chhcccCCCCc
Confidence            56788888877653221     234466999999999999999999999988                 56689999999


Q ss_pred             hHHHH
Q 048100          132 LHEAV  136 (161)
Q Consensus       132 l~~a~  136 (161)
                      +.++.
T Consensus       467 y~ls~  471 (591)
T KOG2505|consen  467 YSLSA  471 (591)
T ss_pred             ccccc
Confidence            98876

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.21  E-value=0.0015  Score=52.19  Aligned_cols=88  Identities=19%  Similarity=0.113  Sum_probs=64.2

Q ss_pred             hHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchh---------c
Q 048100            3 SDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLL---------Q   73 (161)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~---------~   73 (161)
                      ++++.|+...+.+.++.|++.+...      |. .|.+|+..+          ..++++.++.+......         .
T Consensus        64 ~al~iai~nenle~~eLLl~~~~~~------gd-ALL~aI~~~----------~v~~VE~ll~~~~~~~~~~~~~d~~~~  126 (822)
T KOG3609|consen   64 LALHIAIDNENLELQELLLDTSSEE------GD-ALLLAIAVG----------SVPLVELLLVHFVDAPYLERSGDANSP  126 (822)
T ss_pred             hceecccccccHHHHHHHhcCcccc------ch-HHHHHHHHH----------HHHHHHHHHhcccccchhccccccCcc
Confidence            4578899999999999999766433      44 445545444          47789999886443211         1


Q ss_pred             cCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCch
Q 048100           74 VNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQ  107 (161)
Q Consensus        74 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~  107 (161)
                      .-..+.||+..||...+.+|+++|+.+|+..+..
T Consensus       127 ~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~P  160 (822)
T KOG3609|consen  127 HFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIP  160 (822)
T ss_pred             cCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCC
Confidence            1235779999999999999999999999886544

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.27  E-value=0.12  Score=35.74  Aligned_cols=83  Identities=12%  Similarity=0.055  Sum_probs=50.5

Q ss_pred             cHHHHHHHHHhCccchhccCCC----CCcHHHHH--HHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCC
Q 048100           56 STKFVELVLETCPSLLLQVNAK----GDSPLHVA--ARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEED  129 (161)
Q Consensus        56 ~~~~v~~Ll~~~~~~~~~~~~~----~~t~l~~a--~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~  129 (161)
                      ..+++.+|+++..-  ..+|.-    +.--+.++  .......+.++.+++|-.....             .=.+-..|.
T Consensus       191 K~dva~~lls~f~f--t~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~-------------~F~~~NSGd  255 (284)
T PF06128_consen  191 KEDVALYLLSKFNF--TKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNK-------------KFQKVNSGD  255 (284)
T ss_pred             HHHHHHHHHhhcce--ecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccch-------------hhhccCCcc
Confidence            57788888886431  111111    11122222  2233566777777776431111             112446899


Q ss_pred             cHhHHHHHcCCHHHHHHHHhCCCC
Q 048100          130 TALHEAVQSGSLDVVEILLGADPA  153 (161)
Q Consensus       130 t~l~~a~~~~~~~~~~~Ll~~~~~  153 (161)
                      |.|.=|.++++.+|+.+|+++|+-
T Consensus       256 tMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  256 TMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             hHHHhHHhcCcHHHHHHHHHcCcc
Confidence            999999999999999999999984

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.44  E-value=0.15  Score=35.29  Aligned_cols=48  Identities=21%  Similarity=0.287  Sum_probs=40.4

Q ss_pred             cHHHHHHHHHhCccchh---ccCCCCCcHHHHHHHhCCHHHHHHHHHhhhc
Q 048100           56 STKFVELVLETCPSLLL---QVNAKGDSPLHVAARYGHAAVVGALIEFAEK  103 (161)
Q Consensus        56 ~~~~v~~Ll~~~~~~~~---~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~  103 (161)
                      ...++++.+++|-..++   ....+|.|-|-.|..+++.+++.+|+++|+.
T Consensus       229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            47789999998754332   4567899999999999999999999999985

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.30  E-value=0.015  Score=44.20  Aligned_cols=39  Identities=15%  Similarity=-0.055  Sum_probs=37.4

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHV   40 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~   40 (161)
                      .|+||+|+..|+-++|++||+.+.++..+|..|.||..+
T Consensus       431 sT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~l  469 (591)
T KOG2505|consen  431 STFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSL  469 (591)
T ss_pred             chHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccc
Confidence            489999999999999999999999999999999999998

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=93.65  E-value=0.21  Score=28.28  Aligned_cols=46  Identities=15%  Similarity=0.256  Sum_probs=36.2

Q ss_pred             cHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHh
Q 048100           80 SPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLG  149 (161)
Q Consensus        80 t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  149 (161)
                      ..+..|...|+.++++.+++.+..                        ...++..|+...+.+++++|++
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~~------------------------~~~~l~~AI~~H~n~i~~~l~~   53 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNKP------------------------DNDCLEYAIKSHNNEIADWLIE   53 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhcc------------------------HHHHHHHHHHHhhHHHHHHHHH
Confidence            577899999999999998876532                        1456778888888888888874

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=84.11  E-value=4.7  Score=22.67  Aligned_cols=48  Identities=19%  Similarity=0.189  Sum_probs=33.8

Q ss_pred             hHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhC
Q 048100            3 SDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETC   67 (161)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~   67 (161)
                      .-+..|+..|+.|.++.+++.....       ...+..|+..-          +.+++++|+++-
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~~~-------~~~l~~AI~~H----------~n~i~~~l~~~y   55 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNKPD-------NDCLEYAIKSH----------NNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhccH-------HHHHHHHHHHh----------hHHHHHHHHHhc
Confidence            3578899999999999998544211       34466654322          478999999963

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	161
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		2e-05
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		2e-05
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		7e-04

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 20/103 (19%)
Query: 46  YTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQP 105
           +TQ +EG +V+   V L L+   + L Q +  G SPLH A R G +AVV  LI    +  
Sbjct: 10  FTQCREGNAVA---VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-- 64
Query: 106 GQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILL 148
                          + + N  +DT LH A   G  D+V+ LL
Sbjct: 65  ---------------INVMNRGDDTPLHLAASHGHRDIVQKLL 92

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 20/103 (19%)
Query: 46  YTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQP 105
           +TQ +EG +V+   V L L+   + L Q +  G SPLH A R G +AVV  LI    +  
Sbjct: 5   FTQCREGNAVA---VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-- 59
Query: 106 GQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILL 148
                          + + N  +DT LH A   G  D+V+ LL
Sbjct: 60  ---------------INVMNRGDDTPLHLAASHGHRDIVQKLL 87

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 19/76 (25%)
Query: 78  GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQ 137
           GD+PLH+AA YGH  +V  L++           + V +T  Y          T LH A  
Sbjct: 80  GDTPLHLAALYGHLEIVEVLLKNG---------ADVNATDTYGF--------TPLHLAAD 122
Query: 138 SGSLDVVEILL--GAD 151
           +G L++VE+LL  GAD
Sbjct: 123 AGHLEIVEVLLKYGAD 138

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	161
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-13
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-11
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-09
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-08
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-13
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-10
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-08
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-04
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-12
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-12
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-11
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-09
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-08
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	7e-12
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-09
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-08
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-08
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-11
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-10
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-05
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	8e-04
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-11
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-10
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-08
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-04
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-11
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-10
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-06
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-11
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-09
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-11
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-08
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-08
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-07
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-07
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	5e-11
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-09
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-09
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-11
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-10
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-10
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-09
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-11
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-10
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-08
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-11
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-11
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-10
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-08
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-10
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-10
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-08
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-08
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-08
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-10
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-09
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-05
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-10
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-10
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-08
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-07
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-10
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-09
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-07
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-10
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-08
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-07
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-10
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-10
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-08
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-05
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-10
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	7e-10
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-10
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-09
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-08
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-07
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-05
2rfa_A	232	Transient receptor potential cation channel subfa	4e-10
2rfa_A	232	Transient receptor potential cation channel subfa	8e-09
2rfa_A	232	Transient receptor potential cation channel subfa	1e-07
2rfa_A	232	Transient receptor potential cation channel subfa	3e-06
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-10
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-09
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	8e-08
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-07
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-10
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-07
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-10
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	8e-09
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-08
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-10
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-08
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-10
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-08
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-07
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-07
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-07
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-09
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-09
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-09
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-08
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-07
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-09
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	6e-08
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-08
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-09
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-08
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-07
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-06
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-09
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-09
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-07
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-07
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-09
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	9e-09
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-08
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-07
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-09
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-09
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-08
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-09
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-08
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-08
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-08
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-08
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	9e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-08
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	7e-08
2pnn_A	273	Transient receptor potential cation channel subfa	2e-08
2pnn_A	273	Transient receptor potential cation channel subfa	2e-07
2pnn_A	273	Transient receptor potential cation channel subfa	2e-06
2pnn_A	273	Transient receptor potential cation channel subfa	3e-05
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-08
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-05
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-08
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-07
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-04
2etb_A	256	Transient receptor potential cation channel subfam	1e-07
2etb_A	256	Transient receptor potential cation channel subfam	3e-07
2etb_A	256	Transient receptor potential cation channel subfam	1e-06
2etb_A	256	Transient receptor potential cation channel subfam	4e-04
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-06
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	7e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-04
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	8e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	6e-05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 64.1 bits (157), Expect = 3e-13
 Identities = 33/122 (27%), Positives = 43/122 (35%), Gaps = 36/122 (29%)

Query: 38  LHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQ---VNAK---GDSPLHVAARYGHA 91
           LH   +A  T   E         E        LL        +   G++PLH+A   G  
Sbjct: 49  LH---LAVITNQPE-------IAEA-------LLGAGCDPELRDFRGNTPLHLACEQGCL 91

Query: 92  AVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILL--G 149
           A VG L +           S        +L   N    T LH A   G L +VE+L+  G
Sbjct: 92  ASVGVLTQ-----------SCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLG 140

Query: 150 AD 151
           AD
Sbjct: 141 AD 142

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 57.6 bits (140), Expect = 7e-11
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 15/82 (18%)

Query: 73  QVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTAL 132
           Q+   GDS LH+A  +   A+   +I                      L  +N+ + T L
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQV-------KGDLAF------LNFQNNLQQTPL 49

Query: 133 HEAVQSGSLDVVEILL--GADP 152
           H AV +   ++ E LL  G DP
Sbjct: 50  HLAVITNQPEIAEALLGAGCDP 71

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 52.6 bits (127), Expect = 4e-09
 Identities = 32/131 (24%), Positives = 50/131 (38%), Gaps = 45/131 (34%)

Query: 35  NSVLHVNIIASYTQNKEGESVSTKFVELVLETC--PSLLLQVNAK---GDSPLHVAARYG 89
           N+ LH   +A               V ++ ++C  P L   + A    G + LH+A+ +G
Sbjct: 79  NTPLH---LACEQGCLA-------SVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 128

Query: 90  HAAVV------GALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDV 143
           +  +V      GA +   E   G+                      TALH AV   + D+
Sbjct: 129 YLGIVELLVSLGADVNAQEPCNGR----------------------TALHLAVDLQNPDL 166

Query: 144 VEILL--GADP 152
           V +LL  GAD 
Sbjct: 167 VSLLLKCGADV 177

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 49.1 bits (118), Expect = 7e-08
 Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 27/92 (29%)

Query: 70  LLLQ----VNAK----GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYML 121
           LL+     VNA+    G + LH+A    +  +V  L++      G ++            
Sbjct: 135 LLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC-----GADVNR---------- 179

Query: 122 GMKNDEEDTALHEAVQSGSLDVVEILL--GAD 151
                +  +         S  + + L     +
Sbjct: 180 --VTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 209

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 41.4 bits (98), Expect = 3e-05
 Identities = 17/111 (15%), Positives = 30/111 (27%), Gaps = 34/111 (30%)

Query: 38  LHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAK---GDSPLHVAARYGHAAVV 94
           LH   +A   QN +        V L+L+        VN     G SP  +        + 
Sbjct: 155 LH---LAVDLQNPD-------LVSLLLKCGAD----VNRVTYQGYSPYQLTWGRPSTRIQ 200

Query: 95  GALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVE 145
             L +             +++           E +       +S   +  E
Sbjct: 201 QQLGQ-----------LTLEN------LQMLPESEDEESYDTESEFTEFTE 234

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 63.0 bits (154), Expect = 6e-13
 Identities = 35/156 (22%), Positives = 51/156 (32%), Gaps = 46/156 (29%)

Query: 5   LYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVL 64
            ++  +KG         +  Q         ++ LH    A+   N         ++    
Sbjct: 49  WWKGTSKGRTGLIPSNYVAEQ-----AESIDNPLH---EAAKRGNLS-------WLRE-- 91

Query: 65  ETCPSLLLQ---VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTR 118
                 L     VN     G + L+ A   GH  +V  L      QP  EL         
Sbjct: 92  -----CLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLF----TQPNIELNQ------- 135

Query: 119 YMLGMKNDEEDTALHEAVQSGSLDVVEILL--GADP 152
                +N   DTALH A   G  D+V++LL  GA  
Sbjct: 136 -----QNKLGDTALHAAAWKGYADIVQLLLAKGART 166

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 54.9 bits (133), Expect = 5e-10
 Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 20/81 (24%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
           +N +   GD+ LH AA  G+A +V  L+             G +        ++N E+  
Sbjct: 133 LNQQNKLGDTALHAAAWKGYADIVQLLLA-----------KGAR------TDLRNIEKKL 175

Query: 131 ALHEAVQSGSLDVVEILLGAD 151
           A   A  +    +++   G D
Sbjct: 176 AFDMATNAACASLLKKKQGTD 196

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 50.7 bits (122), Expect = 2e-08
 Identities = 10/81 (12%), Positives = 20/81 (24%), Gaps = 24/81 (29%)

Query: 74  VNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALH 133
           +    D+        G   ++ +                           + +  D  LH
Sbjct: 41  ITDMSDTNWWKGTSKGRTGLIPSNYVAE----------------------QAESIDNPLH 78

Query: 134 EAVQSGSLDVVEILL--GADP 152
           EA + G+L  +   L      
Sbjct: 79  EAAKRGNLSWLRECLDNRVGV 99

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 38.0 bits (89), Expect = 6e-04
 Identities = 8/80 (10%), Positives = 19/80 (23%), Gaps = 24/80 (30%)

Query: 70  LLLQ----VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLG 122
           LLL      + +         +A     A+++                +    T      
Sbjct: 158 LLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQG-----------TDAVRT------ 200

Query: 123 MKNDEEDTALHEAVQSGSLD 142
           + N E+     ++       
Sbjct: 201 LSNAEDYLDDEDSDLEHHHH 220

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 58.7 bits (143), Expect = 3e-12
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 19/81 (23%)

Query: 74  VNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALH 133
           + +     L  AAR G    V  L+       G ++ +            K+    T LH
Sbjct: 20  MGSDLGKKLLEAARAGQDDEVRILMAN-----GADVAA------------KDKNGSTPLH 62

Query: 134 EAVQSGSLDVVEILL--GADP 152
            A ++G L+VV++LL  GAD 
Sbjct: 63  LAARNGHLEVVKLLLEAGADV 83

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 42.2 bits (100), Expect = 5e-06
 Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 22/69 (31%)

Query: 85  AARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVV 144
            + + H      L+             G              +    L EA ++G  D V
Sbjct: 1   GSSHHHHHHSSGLVP-----------RGSH---------MGSDLGKKLLEAARAGQDDEV 40

Query: 145 EILL--GAD 151
            IL+  GAD
Sbjct: 41  RILMANGAD 49

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 60.2 bits (147), Expect = 7e-12
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 18/84 (21%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
                  GD+PLH+A   G+   V  L+   ++  G+EL+            + N+   T
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQG-GRELD------------IYNNLRQT 48

Query: 131 ALHEAVQSGSLDVVEILL--GADP 152
            LH AV +    VV +L+  GA P
Sbjct: 49  PLHLAVITTLPSVVRLLVTAGASP 72

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 57.5 bits (140), Expect = 6e-11
 Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 18/84 (21%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
             A    G +  H+A  +     + AL++             +++        +N +  T
Sbjct: 72  PMALDRHGQTAAHLACEHRSPTCLRALLDS-----AAPGTLDLEA--------RNYDGLT 118

Query: 131 ALHEAVQSGSLDVVEILL--GADP 152
           ALH AV +   + V++LL  GAD 
Sbjct: 119 ALHVAVNTECQETVQLLLERGADI 142

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 52.5 bits (127), Expect = 4e-09
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 23/85 (27%)

Query: 74  VNAK----GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEED 129
           ++A     G SPL  A      ++V  L++      G  + +            +     
Sbjct: 142 IDAVDIKSGRSPLIHAVENNSLSMVQLLLQH-----GANVNA------------QMYSGS 184

Query: 130 TALHEAVQSGSLDVVEILL--GADP 152
           +ALH A   G L +V  L+  GAD 
Sbjct: 185 SALHSASGRGLLPLVRTLVRSGADS 209

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 50.1 bits (121), Expect = 3e-08
 Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 22/82 (26%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
           VNA+   G S LH A+  G   +V  L+            SG          +KN   DT
Sbjct: 176 VNAQMYSGSSALHSASGRGLLPLVRTLVR-----------SGAD------SSLKNCHNDT 218

Query: 131 ALHEAVQSGSLDVVEILL--GA 150
            L  A     +D++       A
Sbjct: 219 PLMVARSRRVIDILRGKATRPA 240

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 59.4 bits (145), Expect = 7e-12
 Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 20/80 (25%)

Query: 74  VNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALH 133
           V ++ ++P   AAR      +  L+E  +                      ++   TAL 
Sbjct: 40  VVSEYETPWWTAARKADEQALSQLLEDRDVD------------------AVDENGRTALL 81

Query: 134 EAVQSGSLDVVEILL--GAD 151
                GS   V +L   GAD
Sbjct: 82  FVAGLGSDKCVRLLAEAGAD 101

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 51.3 bits (124), Expect = 6e-09
 Identities = 25/92 (27%), Positives = 34/92 (36%), Gaps = 26/92 (28%)

Query: 70  LLLQ---VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGM 123
            LL+   V+A    G + L   A  G    V  L E      G +L+             
Sbjct: 62  QLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA-----GADLDH------------ 104

Query: 124 KNDEE-DTALHEAVQSGSLDVVEILL--GADP 152
           ++     TALH A      +VVE L+  GAD 
Sbjct: 105 RDMRGGLTALHMAAGYVRPEVVEALVELGADI 136

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 50.2 bits (121), Expect = 2e-08
 Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 23/84 (27%)

Query: 74  VNAK----GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEED 129
           ++ +    G + LH+AA Y    VV AL+E      G ++E             +++   
Sbjct: 102 LDHRDMRGGLTALHMAAGYVRPEVVEALVEL-----GADIEV------------EDERGL 144

Query: 130 TALHEAVQSGSLDVVEILL--GAD 151
           TAL  A +          +  G  
Sbjct: 145 TALELAREILKTTPKGNPMQFGRR 168

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 50.2 bits (121), Expect = 2e-08
 Identities = 10/81 (12%), Positives = 18/81 (22%), Gaps = 21/81 (25%)

Query: 73  QVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTAL 132
           +   +G     +  + GH+         A                         E +T  
Sbjct: 9   RTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD--------------------VVSEYETPW 48

Query: 133 HEAVQSGSLDVVEILL-GADP 152
             A +      +  LL   D 
Sbjct: 49  WTAARKADEQALSQLLEDRDV 69

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 58.2 bits (142), Expect = 2e-11
 Identities = 21/80 (26%), Positives = 26/80 (32%), Gaps = 18/80 (22%)

Query: 74  VNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALH 133
            N++ D  L  AA+ G    V  L               V              + T LH
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKLCTVQ----------SVNCRD------IEGRQSTPLH 47

Query: 134 EAVQSGSLDVVEILL--GAD 151
            A     + VVE LL  GAD
Sbjct: 48  FAAGYNRVSVVEYLLQHGAD 67

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 53.9 bits (131), Expect = 5e-10
 Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 22/84 (26%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
           V+AK   G  PLH A  YGH  V   L++      G  +               +  + T
Sbjct: 68  VHAKDKGGLVPLHNACSYGHYEVAELLVKH-----GAVVNV------------ADLWKFT 110

Query: 131 ALHEAVQSGSLDVVEILL--GADP 152
            LHEA   G  ++ ++LL  GADP
Sbjct: 111 PLHEAAAKGKYEICKLLLQHGADP 134

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 42.0 bits (100), Expect = 1e-05
 Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 23/82 (28%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
           VN       +PLH AA  G   +   L++            G           KN + +T
Sbjct: 101 VNVADLWKFTPLHEAAAKGKYEICKLLLQ-----------HGAD------PTKKNRDGNT 143

Query: 131 ALHEAVQSGSLDVVEILL--GA 150
            L    + G  D+ ++L    A
Sbjct: 144 PLDLV-KDGDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 37.0 bits (87), Expect = 8e-04
 Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 3/32 (9%)

Query: 123 MKNDEEDTALHEAVQSGSLDVVEILL---GAD 151
           M N E D  L EA ++G ++ V+ L      +
Sbjct: 3   MGNSEADRQLLEAAKAGDVETVKKLCTVQSVN 34

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 57.4 bits (140), Expect = 2e-11
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 26/92 (28%)

Query: 70  LLLQ----VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLG 122
            LLQ     N K   G +PLH A  +GH  VV  L++         + +           
Sbjct: 28  YLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH-----KALVNT----------- 71

Query: 123 MKNDEEDTALHEAVQSGSLDVVEILL--GADP 152
               + D+ LH+A ++G +D+V++LL  GA  
Sbjct: 72  -TGYQNDSPLHDAAKNGHVDIVKLLLSYGASR 102

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 54.7 bits (133), Expect = 2e-10
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 19/79 (24%)

Query: 75  NAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHE 134
           N +G++ LH+A+  G    V  L++      G +               K+    T LHE
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQN-----GSDPNV------------KDHAGWTPLHE 49

Query: 135 AVQSGSLDVVEILL--GAD 151
           A   G L VVE+LL   A 
Sbjct: 50  ACNHGHLKVVELLLQHKAL 68

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 49.7 bits (120), Expect = 1e-08
 Identities = 19/87 (21%), Positives = 28/87 (32%), Gaps = 26/87 (29%)

Query: 70  LLLQ----VNAK---GDSPLHVAARYGHAAVVGALIEF-AEKQPGQELESGVKSTTRYML 121
           LLLQ    VN      DSPLH AA+ GH  +V  L+ + A +                  
Sbjct: 61  LLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN----------------- 103

Query: 122 GMKNDEEDTALHEAVQSGSLDVVEILL 148
              N      +          ++ +  
Sbjct: 104 -AVNIFGLRPVDYTDDESMKSLLLLPE 129

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 38.2 bits (90), Expect = 2e-04
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 124 KNDEEDTALHEAVQSGSLDVVEILL--GADP 152
            N   +T LH A   G +  VE LL  G+DP
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDP 36

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 57.0 bits (139), Expect = 2e-11
 Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 22/84 (26%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
           VN     G  PLH AA  G   ++  L+       G ++ +             +    T
Sbjct: 33  VNRTLEGGRKPLHYAADCGQLEILEFLLLK-----GADINA------------PDKHHIT 75

Query: 131 ALHEAVQSGSLDVVEILL--GADP 152
            L  AV  G +  V++LL  GAD 
Sbjct: 76  PLLSAVYEGHVSCVKLLLSKGADK 99

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 54.3 bits (132), Expect = 2e-10
 Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 19/80 (23%)

Query: 74  VNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALH 133
           + +  D     A + G    V   +       G+++                +     LH
Sbjct: 3   LGSMCDKEFMWALKNGDLDEVKDYVAK-----GEDVNR------------TLEGGRKPLH 45

Query: 134 EAVQSGSLDVVEILL--GAD 151
            A   G L+++E LL  GAD
Sbjct: 46  YAADCGQLEILEFLLLKGAD 65

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 44.3 bits (106), Expect = 1e-06
 Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 22/76 (28%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEF-AEKQPGQELESGVKSTTRYMLGMKNDEED 129
           +NA      +PL  A   GH + V  L+   A+K                   +K  +  
Sbjct: 66  INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKT------------------VKGPDGL 107

Query: 130 TALHEAVQSGSLDVVE 145
           TA           +++
Sbjct: 108 TAFEATDNQAIKALLQ 123

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 56.2 bits (137), Expect = 3e-11
 Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 22/84 (26%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
           VNA+   G++PLH+AA+ GHA +V  L+       G ++ +            ++ + +T
Sbjct: 35  VNARSKDGNTPLHLAAKNGHAEIVKLLLA-----KGADVNA------------RSKDGNT 77

Query: 131 ALHEAVQSGSLDVVEILL--GADP 152
             H A ++G  ++V++L   GAD 
Sbjct: 78  PEHLAKKNGHHEIVKLLDAKGADV 101

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 50.8 bits (123), Expect = 3e-09
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 20/81 (24%)

Query: 74  VNAK-GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTAL 132
             +K G++PLH AA+ GHA  V  L+       G ++ +            ++ + +T L
Sbjct: 4   WGSKDGNTPLHNAAKNGHAEEVKKLLSK-----GADVNA------------RSKDGNTPL 46

Query: 133 HEAVQSGSLDVVEILL--GAD 151
           H A ++G  ++V++LL  GAD
Sbjct: 47  HLAAKNGHAEIVKLLLAKGAD 67

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 58.4 bits (142), Expect = 3e-11
 Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 20/81 (24%)

Query: 74  VNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALH 133
           V ++ ++P   AAR      +  L+E  +                      ++   TAL 
Sbjct: 41  VVSEYETPWWTAARKADEQALSQLLEDRDVD------------------AVDENGRTALL 82

Query: 134 EAVQSGSLDVVEILL--GADP 152
                GS   V +L   GAD 
Sbjct: 83  FVAGLGSDKCVRLLAEAGADL 103

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 51.4 bits (124), Expect = 1e-08
 Identities = 24/97 (24%), Positives = 33/97 (34%), Gaps = 36/97 (37%)

Query: 70  LLLQ---VNAK---GDSPLHVAARYGHAAVV------GALIEFAEKQPGQELESGVKSTT 117
            LL+   V+A    G + L   A  G    V      GA ++  + + G           
Sbjct: 63  QLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGL---------- 112

Query: 118 RYMLGMKNDEEDTALHEAVQSGSLDVVEILL--GADP 152
                       TALH A      +VVE L+  GAD 
Sbjct: 113 ------------TALHMAAGYVRPEVVEALVELGADI 137

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 50.3 bits (121), Expect = 3e-08
 Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 23/84 (27%)

Query: 74  VNAK----GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEED 129
           ++ +    G + LH+AA Y    VV AL+E      G ++E             +++   
Sbjct: 103 LDHRDMRGGLTALHMAAGYVRPEVVEALVEL-----GADIEV------------EDERGL 145

Query: 130 TALHEAVQSGSLDVVEILL--GAD 151
           TAL  A +          +  G  
Sbjct: 146 TALELAREILKTTPKGNPMQFGRR 169

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 10/81 (12%), Positives = 18/81 (22%), Gaps = 21/81 (25%)

Query: 73  QVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTAL 132
           +   +G     +  + GH+         A                         E +T  
Sbjct: 10  RTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD--------------------VVSEYETPW 49

Query: 133 HEAVQSGSLDVVEILL-GADP 152
             A +      +  LL   D 
Sbjct: 50  WTAARKADEQALSQLLEDRDV 70

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 47.6 bits (114), Expect = 2e-07
 Identities = 11/88 (12%), Positives = 24/88 (27%), Gaps = 10/88 (11%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFA----EKQPGQELESGVKSTTRYM-LGMKN 125
           +  +   G + L +A         G  ++F      ++    LE  V        +  K 
Sbjct: 137 IEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKR 196

Query: 126 DEEDTALHEAVQSGSLDVVEILL--GAD 151
            +     +        D   +     A+
Sbjct: 197 GKGKDVEYLVRWKDGGDCEWVKGVHVAE 224

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 55.8 bits (136), Expect = 5e-11
 Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 22/83 (26%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
           VNAK   G +PLH+AAR GH  VV  L+E      G ++ +            K+    T
Sbjct: 28  VNAKDKNGRTPLHLAARNGHLEVVKLLLEA-----GADVNA------------KDKNGRT 70

Query: 131 ALHEAVQSGSLDVVEILL--GAD 151
            LH A ++G L+VV++LL  GAD
Sbjct: 71  PLHLAARNGHLEVVKLLLEAGAD 93

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 52.3 bits (127), Expect = 1e-09
 Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 22/82 (26%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
           VNAK   G +PLH+AAR GH  VV  L+E      G ++ +            K+    T
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEA-----GADVNA------------KDKNGRT 103

Query: 131 ALHEAVQSGSLDVVEILL--GA 150
            LH A ++G L+VV++LL  GA
Sbjct: 104 PLHLAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 52.0 bits (126), Expect = 2e-09
 Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 19/76 (25%)

Query: 78  GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQ 137
           G +PLH+AAR GH  VV  L+E      G ++ +            K+    T LH A +
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEA-----GADVNA------------KDKNGRTPLHLAAR 44

Query: 138 SGSLDVVEILL--GAD 151
           +G L+VV++LL  GAD
Sbjct: 45  NGHLEVVKLLLEAGAD 60

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 56.6 bits (138), Expect = 5e-11
 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 26/92 (28%)

Query: 70  LLLQ----VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLG 122
            LLQ            +S L +A   G+  +V  L++      G ++             
Sbjct: 54  FLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDC-----GVDVNE----------- 97

Query: 123 MKNDEEDTALHEAVQSGSLDVVEILL--GADP 152
             +    T L  AV    +  V++LL  GADP
Sbjct: 98  -YDWNGGTPLLYAVHGNHVKCVKMLLESGADP 128

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 55.1 bits (134), Expect = 2e-10
 Identities = 16/83 (19%), Positives = 25/83 (30%), Gaps = 22/83 (26%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
           VN     G +PL  A    H   V  L+E      G +               + D    
Sbjct: 95  VNEYDWNGGTPLLYAVHGNHVKCVKMLLES-----GADPTI------------ETDSGYN 137

Query: 131 ALHEAVQSGSLDVVEILL--GAD 151
           ++  AV  G   V +++      
Sbjct: 138 SMDLAVALGYRSVQQVIESHLLK 160

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 54.3 bits (132), Expect = 4e-10
 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 24/85 (28%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEF-AEKQPGQELESGVKSTTRYMLGMKNDEED 129
           +N     G +PL  AA +G  AVV  L++  A+ Q                  +     +
Sbjct: 29  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ------------------LLGKGRE 70

Query: 130 TALHEAVQSGSLDVVEILL--GADP 152
           +AL  A   G  D+V++LL  G D 
Sbjct: 71  SALSLACSKGYTDIVKMLLDCGVDV 95

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 52.8 bits (128), Expect = 2e-09
 Identities = 19/77 (24%), Positives = 25/77 (32%), Gaps = 19/77 (24%)

Query: 78  GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQ 137
               +H  A  G    +   IE         +               ++E  T L  A  
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQ-----ENVINH------------TDEEGFTPLMWAAA 45

Query: 138 SGSLDVVEILL--GADP 152
            G + VVE LL  GADP
Sbjct: 46  HGQIAVVEFLLQNGADP 62

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 56.7 bits (138), Expect = 6e-11
 Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 26/92 (28%)

Query: 70  LLLQ----VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLG 122
           LLL+    +N     G +PL  A R  H   V AL+       G +L +           
Sbjct: 87  LLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR-----GADLTT----------- 130

Query: 123 MKNDEEDTALHEAVQSGSLDVVEILL--GADP 152
            + D   T +  AV  G   V +++       
Sbjct: 131 -EADSGYTPMDLAVALGYRKVQQVIENHILKL 161

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 54.3 bits (132), Expect = 4e-10
 Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 22/84 (26%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
           VN     G +PL  A+ +G    V  L+E+     G +                  E ++
Sbjct: 29  VNKPDERGFTPLIWASAFGEIETVRFLLEW-----GADPHI------------LAKERES 71

Query: 131 ALHEAVQSGSLDVVEILL--GADP 152
           AL  A   G  D+V +LL    D 
Sbjct: 72  ALSLASTGGYTDIVGLLLERDVDI 95

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 50.1 bits (121), Expect = 2e-08
 Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 19/78 (24%)

Query: 78  GDS-PLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAV 136
           GDS  +H  A  G    +   +       G  L +             ++   T L  A 
Sbjct: 1   GDSLSIHQLAAQGELDQLKEHLR-----KGDNLVN-----------KPDERGFTPLIWAS 44

Query: 137 QSGSLDVVEILL--GADP 152
             G ++ V  LL  GADP
Sbjct: 45  AFGEIETVRFLLEWGADP 62

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 56.7 bits (138), Expect = 7e-11
 Identities = 28/84 (33%), Positives = 34/84 (40%), Gaps = 22/84 (26%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
           +N     G SPLH A R G +AVV  LI       G  +               N  +DT
Sbjct: 32  LNQGDDHGFSPLHWACREGRSAVVEMLIMR-----GARINV------------MNRGDDT 74

Query: 131 ALHEAVQSGSLDVVEILL--GADP 152
            LH A   G  D+V+ LL   AD 
Sbjct: 75  PLHLAASHGHRDIVQKLLQYKADI 98

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 56.7 bits (138), Expect = 7e-11
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 22/84 (26%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
           +N      D+PLH+AA +GH  +V  L+++       ++ +             N+  + 
Sbjct: 65  INVMNRGDDTPLHLAASHGHRDIVQKLLQY-----KADINA------------VNEHGNV 107

Query: 131 ALHEAVQSGSLDVVEILL--GADP 152
            LH A   G   V E L+  GA  
Sbjct: 108 PLHYACFWGQDQVAEDLVANGALV 131

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 53.6 bits (130), Expect = 8e-10
 Identities = 19/98 (19%), Positives = 29/98 (29%), Gaps = 38/98 (38%)

Query: 70  LLLQ----VNAK---GDSPLHVAARYGHAAVV------GALIEFAEKQPGQELESGVKST 116
            LLQ    +NA    G+ PLH A  +G   V       GAL+                  
Sbjct: 90  KLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS----------------- 132

Query: 117 TRYMLGMKNDEEDTALHEAVQSGSLDVVEILL--GADP 152
                 + N   +  + +A       + E     G + 
Sbjct: 133 ------ICNKYGEMPVDKAKAPLRELLRERAEKMGQNL 164

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 50.9 bits (123), Expect = 8e-09
 Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 18/76 (23%)

Query: 78  GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQ 137
               +    R G+A  V   ++        +L               +D   + LH A +
Sbjct: 5   FMDDIFTQCREGNAVAVRLWLD----NTENDLNQ------------GDDHGFSPLHWACR 48

Query: 138 SGSLDVVEILL--GAD 151
            G   VVE+L+  GA 
Sbjct: 49  EGRSAVVEMLIMRGAR 64

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 57.5 bits (140), Expect = 1e-10
 Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 21/84 (25%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
           VN +   G +PL +A    H  +V  L+E    Q   E+               + +  T
Sbjct: 212 VNVRGERGKTPLILAVEKKHLGLVQRLLE----QEHIEIND------------TDSDGKT 255

Query: 131 ALHEAVQSGSLDVVEILL--GADP 152
           AL  AV+     + E+L   GA  
Sbjct: 256 ALLLAVELKLKKIAELLCKRGAST 279

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 54.4 bits (132), Expect = 1e-09
 Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 22/83 (26%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
              +   G +P  +AA  G   ++   +       G ++               +    T
Sbjct: 65  PVLRKKNGATPFLLAAIAGSVKLLKLFLSK-----GADVNE------------CDFYGFT 107

Query: 131 ALHEAVQSGSLDVVEILL--GAD 151
           A  EA   G +  ++ L   GA+
Sbjct: 108 AFMEAAVYGKVKALKFLYKRGAN 130

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 54.0 bits (131), Expect = 1e-09
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 17/92 (18%)

Query: 70  LLLQ----VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLG 122
           L L     VN     G +    AA YG    +  L +      G  +   ++  T+    
Sbjct: 90  LFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR-----GANVN--LRRKTKEDQE 142

Query: 123 MKNDEEDTALHEAVQSGSLDVVEILL---GAD 151
                  TAL +A + G ++V++ILL   GAD
Sbjct: 143 RLRKGGATALMDAAEKGHVEVLKILLDEMGAD 174

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 52.5 bits (127), Expect = 6e-09
 Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 18/80 (22%)

Query: 75  NAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHE 134
             + +  L  A +     +V  L+E            G     +     + +   T LH 
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLE-----------GGANVNFQ-----EEEGGWTPLHN 45

Query: 135 AVQSGSLDVVEILL--GADP 152
           AVQ    D+VE+LL  GADP
Sbjct: 46  AVQMSREDIVELLLRHGADP 65

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 50.2 bits (121), Expect = 3e-08
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 19/84 (22%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
           VNA    G + L  A      + V A+           L+ G        + ++ +   T
Sbjct: 175 VNACDNMGRNALIHALLSSDDSDVEAITHLL-------LDHGAD------VNVRGERGKT 221

Query: 131 ALHEAVQSGSLDVVEILL---GAD 151
            L  AV+   L +V+ LL     +
Sbjct: 222 PLILAVEKKHLGLVQRLLEQEHIE 245

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 57.5 bits (140), Expect = 1e-10
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 26/92 (28%)

Query: 70  LLLQ----VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLG 122
           +L++    V+A    G +PLHVA+ YG+  +V  L++                     + 
Sbjct: 296 VLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ-----------HQAD------VN 338

Query: 123 MKNDEEDTALHEAVQSGSLDVVEILL--GADP 152
            K     + LH+A Q G  D+V +LL  GA P
Sbjct: 339 AKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP 370

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 56.0 bits (136), Expect = 4e-10
 Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 25/97 (25%)

Query: 64  LETCPSLLLQ---VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTT 117
           +E   SLL      NA+   G +PLH+AA+ GHA +V  L+                   
Sbjct: 225 VEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS-----------KQAN--- 270

Query: 118 RYMLGMKNDEEDTALHEAVQSGSLDVVEILL--GADP 152
                + N    T LH   Q G + V ++L+  G   
Sbjct: 271 ---GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV 304

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 55.6 bits (135), Expect = 5e-10
 Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 26/92 (28%)

Query: 70  LLLQ----VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLG 122
            LL+           G +PLHVAA+YG   V   L+E           +           
Sbjct: 131 ALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER-----DAHPNA----------- 174

Query: 123 MKNDEEDTALHEAVQSGSLDVVEILL--GADP 152
                  T LH AV   +LD+V++LL  G  P
Sbjct: 175 -AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP 205

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 55.6 bits (135), Expect = 6e-10
 Identities = 28/92 (30%), Positives = 36/92 (39%), Gaps = 26/92 (28%)

Query: 70  LLLQ----VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLG 122
           LLL+     N     G +PLH+AAR GH   V AL+E                       
Sbjct: 98  LLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE-----------KEAS------QA 140

Query: 123 MKNDEEDTALHEAVQSGSLDVVEILL--GADP 152
               +  T LH A + G + V E+LL   A P
Sbjct: 141 CMTKKGFTPLHVAAKYGKVRVAELLLERDAHP 172

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 55.6 bits (135), Expect = 7e-10
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 22/84 (26%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
            ++    G +PLH+AA+     V  +L+++     G    +            ++ +  T
Sbjct: 205 PHSPAWNGYTPLHIAAKQNQVEVARSLLQY-----GGSANA------------ESVQGVT 247

Query: 131 ALHEAVQSGSLDVVEILL--GADP 152
            LH A Q G  ++V +LL   A+ 
Sbjct: 248 PLHLAAQEGHAEMVALLLSKQANG 271

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 55.2 bits (134), Expect = 8e-10
 Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 22/85 (25%)

Query: 73  QVNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEED 129
           +VNAK     +PLH AAR GH  +V  L+E           +           +      
Sbjct: 72  KVNAKAKDDQTPLHCAARIGHTNMVKLLLE-----------NNAN------PNLATTAGH 114

Query: 130 TALHEAVQSGSLDVVEILL--GADP 152
           T LH A + G ++ V  LL   A  
Sbjct: 115 TPLHIAAREGHVETVLALLEKEASQ 139

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 54.4 bits (132), Expect = 1e-09
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 22/84 (26%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
                  G +PLHVA+  GH  +V  L++            G          + N + +T
Sbjct: 7   GGGGGESGLTPLHVASFMGHLPIVKNLLQ-----------RGAS------PNVSNVKVET 49

Query: 131 ALHEAVQSGSLDVVEILL--GADP 152
            LH A ++G  +V + LL   A  
Sbjct: 50  PLHMAARAGHTEVAKYLLQNKAKV 73

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 50.2 bits (121), Expect = 4e-08
 Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 29/95 (30%)

Query: 70  LLLQ----VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLG 122
            LLQ    VNAK   G SPLH AA+ GH  +V  L++           +G          
Sbjct: 329 FLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK-----------NGAS------PN 371

Query: 123 MKNDEEDTALHEAVQSGSLDVVEILL-----GADP 152
             + +  T L  A + G + V ++L       +  
Sbjct: 372 EVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFV 406

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 54.8 bits (133), Expect = 2e-10
 Identities = 18/92 (19%), Positives = 25/92 (27%), Gaps = 27/92 (29%)

Query: 70  LLLQ----VNAKGD----SPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYML 121
           LLL      N         P+H AAR G    +  L        G  L+           
Sbjct: 62  LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA-----GARLDV---------- 106

Query: 122 GMKNDEEDTALHEAVQSGSLDVVEILL--GAD 151
              +      +  A + G  D+   L     D
Sbjct: 107 --CDAWGRLPVDLAEEQGHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 52.1 bits (126), Expect = 2e-09
 Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 23/84 (27%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
           ++      D+ L  AA  G    V  L+E      G +  +             N     
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQLLEA-----GADPNA------------LNRFGRR 47

Query: 131 ALHEAVQSGSLDVVEILL--GADP 152
            +   +  GS  V E+LL  GA+P
Sbjct: 48  PIQVMMM-GSAQVAELLLLHGAEP 70

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 47.1 bits (113), Expect = 1e-07
 Identities = 19/85 (22%), Positives = 26/85 (30%), Gaps = 22/85 (25%)

Query: 73  QVNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEED 129
             NA    G  P+ V    G A V   L+       G E                     
Sbjct: 37  DPNALNRFGRRPIQVMMM-GSAQVAELLLLH-----GAEPNCA-----------DPATLT 79

Query: 130 TALHEAVQSGSLDVVEILL--GADP 152
             +H+A + G LD + +L   GA  
Sbjct: 80  RPVHDAAREGFLDTLVVLHRAGARL 104

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 23/137 (16%), Positives = 42/137 (30%), Gaps = 44/137 (32%)

Query: 31  IHKKNS---VLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQ----VNAK---GDS 80
           I        VLH     +   + E         E ++       +     VNA     ++
Sbjct: 119 IIDPRHNRTVLH---WIASNSSAE-------KSEDLIVHEAKECIAAGADVNAMDCDENT 168

Query: 81  PLHVAARYGHAAVVGALIEF-AEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSG 139
           PL +A       +V  L++  A+                    + N  E +ALH+A  + 
Sbjct: 169 PLMLAVLARRRRLVAYLMKAGADPT------------------IYNKSERSALHQAAANR 210

Query: 140 SLDVVEILL-----GAD 151
              ++  +L       D
Sbjct: 211 DFGMMVYMLNSTKLKGD 227

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 55.3 bits (134), Expect = 6e-10
 Identities = 27/161 (16%), Positives = 58/161 (36%), Gaps = 37/161 (22%)

Query: 5   LYEAAAKGVIEPFNQLAIDRQLGSLVIHKKN----SVLHVNIIASYTQNKEGESVSTKFV 60
           L++AAA         + ++       I + +    + L    I ++ + ++  +      
Sbjct: 203 LHQAAANRDFGMMVYM-LNSTKLKGDIEELDRNGMTALM---IVAHNEGRDQVAS----A 254

Query: 61  EL-------VLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGV 113
           +L       V     +       KG + LH AA+  +  +V  L+     + G   +   
Sbjct: 255 KLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLV----GEKGSNKD--- 307

Query: 114 KSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILL--GADP 152
                     ++++  T +  A Q G ++VV  L+  GA  
Sbjct: 308 ---------KQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV 339

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 51.9 bits (125), Expect = 1e-08
 Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 24/84 (28%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIE-FAEKQPGQELESGVKSTTRYMLGMKNDEED 129
            + +   G +P+ +AA+ G   VV  LI+  A  +                    +  + 
Sbjct: 306 KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE------------------AVDATDH 347

Query: 130 TALHEAVQSGSLDVVEILL--GAD 151
           TA   A  +   ++V+I      +
Sbjct: 348 TARQLAQANNHHNIVDIFDRCRPE 371

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 9/76 (11%), Positives = 14/76 (18%), Gaps = 20/76 (26%)

Query: 78  GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQ 137
              P       G+  +             Q                   E    LH    
Sbjct: 61  SLYPNPQGYGNGNDFLGDFNHTN-----LQIPTE------------PEPESPIKLHTEAA 103

Query: 138 SGSLDVVEILL--GAD 151
            GS  + E +     +
Sbjct: 104 -GSYAITEPITRESVN 118

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 54.7 bits (133), Expect = 2e-10
 Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 25/91 (27%)

Query: 70  LLLQ----VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLG 122
            LL+     N +   G SP+H AAR G    +  L+E      G ++             
Sbjct: 53  ELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEH-----GADVNV----------- 96

Query: 123 MKNDEEDTALHEAVQSGSLDVVEILL-GADP 152
             +      +H AVQ G   VV  L   +D 
Sbjct: 97  -PDGTGALPIHLAVQEGHTAVVSFLAAESDL 126

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 54.3 bits (132), Expect = 4e-10
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 21/78 (26%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
           VN     G  P+H+A + GH AVV  L   ++                     ++    T
Sbjct: 94  VNVPDGTGALPIHLAVQEGHTAVVSFLAAESDL------------------HRRDARGLT 135

Query: 131 ALHEAVQSGSLDVVEILL 148
            L  A+Q G+ D+V+IL 
Sbjct: 136 PLELALQRGAQDLVDILQ 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 48.9 bits (118), Expect = 4e-08
 Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 27/92 (29%)

Query: 70  LLLQ----VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLG 122
           LL +     +A    G + L V   +G  A+   L++      G                
Sbjct: 21  LLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQ-----GASPNV----------- 63

Query: 123 MKNDEEDTALHEAVQSGSLDVVEILL--GADP 152
            ++    + +H+A ++G LD +++L+  GAD 
Sbjct: 64  -QDTSGTSPVHDAARTGFLDTLKVLVEHGADV 94

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 47.8 bits (115), Expect = 1e-07
 Identities = 17/78 (21%), Positives = 23/78 (29%), Gaps = 19/78 (24%)

Query: 77  KGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAV 136
           +    L  AA  G    V  L+     +     ++             N    TAL    
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLH----RELVHPDA------------LNRFGKTALQVM- 43

Query: 137 QSGSLDVVEILL--GADP 152
             GS  +   LL  GA P
Sbjct: 44  MFGSTAIALELLKQGASP 61

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 54.8 bits (133), Expect = 2e-10
 Identities = 18/93 (19%), Positives = 25/93 (26%), Gaps = 27/93 (29%)

Query: 70  LLLQ----VNAKGD----SPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYML 121
           LLL      N         P+H AAR G    +  L        G  L+           
Sbjct: 62  LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA-----GARLDV---------- 106

Query: 122 GMKNDEEDTALHEAVQSGSLDVVEILL--GADP 152
             ++      +  A + G  DV   L       
Sbjct: 107 --RDAWGRLPVDLAEELGHRDVARYLRAAAGGT 137

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 50.9 bits (123), Expect = 7e-09
 Identities = 19/78 (24%), Positives = 25/78 (32%), Gaps = 20/78 (25%)

Query: 77  KGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAV 136
                L  AA  G    V AL+E      G    +             N      +   +
Sbjct: 11  PSADWLATAAARGRVEEVRALLEA-----GANPNA------------PNSYGRRPIQVMM 53

Query: 137 QSGSLDVVEILL--GADP 152
             GS  V E+LL  GA+P
Sbjct: 54  M-GSARVAELLLLHGAEP 70

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 46.3 bits (111), Expect = 3e-07
 Identities = 19/85 (22%), Positives = 26/85 (30%), Gaps = 22/85 (25%)

Query: 73  QVNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEED 129
             NA    G  P+ V    G A V   L+       G E                     
Sbjct: 37  NPNAPNSYGRRPIQVMMM-GSARVAELLLLH-----GAEPNCA-----------DPATLT 79

Query: 130 TALHEAVQSGSLDVVEILL--GADP 152
             +H+A + G LD + +L   GA  
Sbjct: 80  RPVHDAAREGFLDTLVVLHRAGARL 104

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 41.7 bits (99), Expect = 2e-05
 Identities = 10/84 (11%), Positives = 19/84 (22%), Gaps = 31/84 (36%)

Query: 70  LLLQ----VNAK---GDSPLHVAARYGHAAVVGALIEF-AEKQPGQELESGVKSTTRYML 121
           +L +    ++ +   G  P+ +A   GH  V   L                         
Sbjct: 96  VLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGT------------------ 137

Query: 122 GMKNDEEDTALHEAVQSGSLDVVE 145
                            G  D+ +
Sbjct: 138 -----RGSNHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 37.5 bits (88), Expect = 4e-04
 Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 2/33 (6%)

Query: 122 GMKNDEEDTALHEAVQSGSLDVVEILL--GADP 152
           G   +     L  A   G ++ V  LL  GA+P
Sbjct: 6   GSSMEPSADWLATAAARGRVEEVRALLEAGANP 38

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 55.1 bits (134), Expect = 3e-10
 Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 19/83 (22%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
           +N +    DSP   A   G   ++  +++ A      +L               N     
Sbjct: 65  INLQNSISDSPYLYAGAQGRTEILAYMLKHA----TPDLNK------------HNRYGGN 108

Query: 131 ALHEAVQSGSLDVVEILLGADPA 153
           AL  A + G +D V++LL     
Sbjct: 109 ALIPAAEKGHIDNVKLLLEDGRE 131

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 50.1 bits (121), Expect = 2e-08
 Identities = 13/79 (16%), Positives = 29/79 (36%), Gaps = 19/79 (24%)

Query: 75  NAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHE 134
             +  + L  A +     V   L +        +++              + E +T L+ 
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQD-----TTYQVDE------------VDTEGNTPLNI 45

Query: 135 AVQSGSLDVVEILL--GAD 151
           AV +  +++ + L+  GAD
Sbjct: 46  AVHNNDIEIAKALIDRGAD 64

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 47.1 bits (113), Expect = 2e-07
 Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 25/100 (25%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIE--FAEK--------------QPGQELESGVK 114
           +N     G + L  AA  GH   V  L+E    +                  +E     +
Sbjct: 99  LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQ 158

Query: 115 STTRYMLG------MKNDEEDTALHEAVQSGSLDVVEILL 148
              + ++       +K++   TA+  A Q G  ++ +IL 
Sbjct: 159 DIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILA 198

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 39.0 bits (92), Expect = 2e-04
 Identities = 10/31 (32%), Positives = 11/31 (35%), Gaps = 2/31 (6%)

Query: 123 MKNDEEDTALHEAVQSGSLDVVEILL--GAD 151
           MK  E    L  A Q  +  V EIL      
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQ 31

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 56.0 bits (136), Expect = 3e-10
 Identities = 24/84 (28%), Positives = 31/84 (36%), Gaps = 22/84 (26%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
           VN       SPLH A   GH + V  L++      G ++                 +  T
Sbjct: 85  VNIITADHVSPLHEACLGGHLSCVKILLKH-----GAQVNG------------VTADWHT 127

Query: 131 ALHEAVQSGSLDVVEILL--GADP 152
            L  A  SGS D V +LL  GA  
Sbjct: 128 PLFNACVSGSWDCVNLLLQHGASV 151

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 54.8 bits (133), Expect = 8e-10
 Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 29/93 (31%)

Query: 70  LLLQ----VNAK---GDSPLHVAARYGHAAVVGALIEF-AEKQPGQELESGVKSTTRYML 121
            L+     ++ K     +PL++A      A V  L+E  A+                   
Sbjct: 175 SLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN----------------- 217

Query: 122 GMKNDEEDTALHEAVQSGSLDVVEILL--GADP 152
             +   +D+ LH  V++ S ++  +L+  GAD 
Sbjct: 218 --QGKGQDSPLHAVVRTASEELACLLMDFGADT 248

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 50.2 bits (121), Expect = 4e-08
 Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 19/80 (23%)

Query: 75  NAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHE 134
                SP+H AA +GH   +  LI             G        + +   +  + LHE
Sbjct: 56  AVSDWSPMHEAAIHGHQLSLRNLI-----------SQGWA------VNIITADHVSPLHE 98

Query: 135 AVQSGSLDVVEILL--GADP 152
           A   G L  V+ILL  GA  
Sbjct: 99  ACLGGHLSCVKILLKHGAQV 118

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 44.8 bits (107), Expect = 2e-06
 Identities = 19/86 (22%), Positives = 25/86 (29%), Gaps = 26/86 (30%)

Query: 73  QVNAK--GDSPLHVAARYGHAAVVGALIEF-AEKQPGQELESGVKSTTRYMLGMKNDEED 129
            VN     DSPLH   R     +   L++F A+ Q                   KN E  
Sbjct: 215 DVNQGKGQDSPLHAVVRTASEELACLLMDFGADTQ------------------AKNAEGK 256

Query: 130 TALHEAVQSGSLDVVEILL---GADP 152
             +        L  +   L   GA  
Sbjct: 257 RPVELVPPESPLAQL--FLEREGASL 280

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 41.7 bits (99), Expect = 3e-05
 Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 16/84 (19%)

Query: 84  VAARYGHAAVV------GALIEFAEKQPGQELES---GVKSTTRYML---GMKNDEED-- 129
           + + + H          G+ +   + + G    S   G +      L    +  D     
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDW 60

Query: 130 TALHEAVQSGSLDVVEILL--GAD 151
           + +HEA   G    +  L+  G  
Sbjct: 61  SPMHEAAIHGHQLSLRNLISQGWA 84

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 52.7 bits (128), Expect = 3e-10
 Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 22/82 (26%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
           VNAK   G +PLH+AAR GH  VV  L+E      G ++ +            K+    T
Sbjct: 28  VNAKDKNGRTPLHLAARNGHLEVVKLLLEA-----GADVNA------------KDKNGRT 70

Query: 131 ALHEAVQSGSLDVVEILL--GA 150
            LH A ++G L+VV++LL  GA
Sbjct: 71  PLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 52.0 bits (126), Expect = 7e-10
 Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 19/76 (25%)

Query: 78  GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQ 137
           G +PLH+AAR GH  VV  L+E      G ++ +            K+    T LH A +
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLE-----AGADVNA------------KDKNGRTPLHLAAR 44

Query: 138 SGSLDVVEILL--GAD 151
           +G L+VV++LL  GAD
Sbjct: 45  NGHLEVVKLLLEAGAD 60

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 55.1 bits (134), Expect = 4e-10
 Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 23/87 (26%)

Query: 74  VNAK------GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDE 127
           VN        G +P H+A   G+  VV +L +   +    +L                ++
Sbjct: 62  VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYD---RPLKPDLNK------------ITNQ 106

Query: 128 EDTALHEAVQSGSLDVVEILL--GADP 152
             T LH AV     +V + L+  GA  
Sbjct: 107 GVTCLHLAVGKKWFEVSQFLIENGASV 133

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 53.2 bits (129), Expect = 2e-09
 Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 22/85 (25%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
           V  K      PLH AA  G   ++  L           +              ++ +  T
Sbjct: 133 VRIKDKFNQIPLHRAASVGSLKLIELLCG----LGKSAVNW------------QDKQGWT 176

Query: 131 ALHEAVQSGSLDVVEILL---GADP 152
            L  A+  G  D   +L+   GA+ 
Sbjct: 177 PLFHALAEGHGDAAVLLVEKYGAEY 201

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 50.5 bits (122), Expect = 2e-08
 Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 20/78 (25%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
           +N     G + LH+A       V   LIE      G  +              K+     
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIEN-----GASVRI------------KDKFNQI 142

Query: 131 ALHEAVQSGSLDVVEILL 148
            LH A   GSL ++E+L 
Sbjct: 143 PLHRAASVGSLKLIELLC 160

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 47.4 bits (114), Expect = 3e-07
 Identities = 12/83 (14%), Positives = 22/83 (26%), Gaps = 32/83 (38%)

Query: 78  GDSPLHVAARYGHAAVV-------GALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
            + PLH A        V        +L+                         K+ +   
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLL-----------------------QKDQDGRI 38

Query: 131 ALHEAVQSGSLDVVEILL--GAD 151
            LH +V   + ++   LL    +
Sbjct: 39  PLHWSVSFQAHEITSFLLSKMEN 61

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 40.9 bits (97), Expect = 4e-05
 Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 22/78 (28%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
           VN +   G +PL  A   GH      L+E    + G E +              +++   
Sbjct: 167 VNWQDKQGWTPLFHALAEGHGDAAVLLVE----KYGAEYDL------------VDNKGAK 210

Query: 131 ALHEAVQSGSLDVVEILL 148
           A   A+      V +  L
Sbjct: 211 AEDVALN---EQVKKFFL 225

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 55.3 bits (134), Expect = 4e-10
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 17/83 (20%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
           V+ +   G++ LH+AA Y +      L+E A +   + + S            +  E  T
Sbjct: 30  VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTS------------ELYEGQT 77

Query: 131 ALHEAVQSGSLDVVEILL--GAD 151
           ALH AV + ++++V  LL  GA 
Sbjct: 78  ALHIAVINQNVNLVRALLARGAS 100

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 51.5 bits (124), Expect = 8e-09
 Identities = 10/84 (11%), Positives = 27/84 (32%), Gaps = 12/84 (14%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
           + A+   G++ LH+     +      +           L        + +  + N++  T
Sbjct: 147 IRAQDSLGNTVLHILILQPNKTFACQMYNLL-------LSYDGGDHLKSLELVPNNQGLT 199

Query: 131 ALHEAVQSGSLDVVEILL--GADP 152
               A   G++ + + L+      
Sbjct: 200 PFKLAGVEGNIVMFQHLMQKRKHI 223

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 48.4 bits (116), Expect = 1e-07
 Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 17/88 (19%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIE----FAEKQPGQELESGVKSTTRYMLGMKND 126
           + ++   G + LH+A    +  +V AL+      + +  G        +   Y       
Sbjct: 68  MTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYY------- 120

Query: 127 EEDTALHEAVQSGSLDVVEILL--GADP 152
             +  L  A   GS ++V +L+  GAD 
Sbjct: 121 -GEHPLSFAACVGSEEIVRLLIEHGADI 147

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 44.5 bits (106), Expect = 3e-06
 Identities = 13/83 (15%), Positives = 25/83 (30%), Gaps = 32/83 (38%)

Query: 78  GDSPLHVAARYGHAAVV-------GALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
            +SPL +AA+      +       G  +                         +    +T
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVH-----------------------QRGAMGET 39

Query: 131 ALHEAVQSGSLDVVEILL--GAD 151
           ALH A    +L+   +L+    +
Sbjct: 40  ALHIAALYDNLEAAMVLMEAAPE 62

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 53.9 bits (131), Expect = 4e-10
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 22/84 (26%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
            +A+     +PLH+AA  GHA +V  L++      G ++ +            K+  + T
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKH-----GADVNA------------KDMLKMT 102

Query: 131 ALHEAVQSGSLDVVEILL--GADP 152
           ALH A +    +VVE+L+  GAD 
Sbjct: 103 ALHWATEHNHQEVVELLIKYGADV 126

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 50.8 bits (123), Expect = 6e-09
 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 21/83 (25%)

Query: 74  VNAK--GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTA 131
                 G SPLH+AA+YGH +    L+       G   ++            +   + T 
Sbjct: 28  FTTDWLGTSPLHLAAQYGHFSTTEVLLRA-----GVSRDA------------RTKVDRTP 70

Query: 132 LHEAVQSGSLDVVEILL--GADP 152
           LH A   G  ++VE+LL  GAD 
Sbjct: 71  LHMAASEGHANIVEVLLKHGADV 93

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 47.8 bits (115), Expect = 8e-08
 Identities = 18/76 (23%), Positives = 23/76 (30%), Gaps = 20/76 (26%)

Query: 78  GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQ 137
               L  AAR G    V  L+            +G   T        +    + LH A Q
Sbjct: 2   LGKKLLEAARAGQDDEVRILMA-----------NGAPFT-------TDWLGTSPLHLAAQ 43

Query: 138 SGSLDVVEILL--GAD 151
            G     E+LL  G  
Sbjct: 44  YGHFSTTEVLLRAGVS 59

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 47.4 bits (114), Expect = 1e-07
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 20/77 (25%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
           VNAK     + LH A  + H  VV  LI++     G ++ +            ++    T
Sbjct: 93  VNAKDMLKMTALHWATEHNHQEVVELLIKY-----GADVHT------------QSKFCKT 135

Query: 131 ALHEAVQSGSLDVVEIL 147
           A   ++ +G+ D+ EIL
Sbjct: 136 AFDISIDNGNEDLAEIL 152

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 55.6 bits (135), Expect = 5e-10
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 20/82 (24%)

Query: 74  VNAK-GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTAL 132
            N    + PLH AA      +V  L+       G +                +D+ +TAL
Sbjct: 57  KNLLENEFPLHQAATLEDTKIVKILLFS-----GLDDSQ------------FDDKGNTAL 99

Query: 133 HEAVQSGSLDVVEILL--GADP 152
           + AV SG++  V++ +      
Sbjct: 100 YYAVDSGNMQTVKLFVKKNWRL 121

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 51.4 bits (124), Expect = 1e-08
 Identities = 12/93 (12%), Positives = 25/93 (26%), Gaps = 25/93 (26%)

Query: 70  LLLQ----VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLG 122
           +LL      +     G++ L+ A   G+   V   ++              +        
Sbjct: 80  ILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVK-----------KNWRLMFY---- 124

Query: 123 MKNDEEDTALHEAVQSGSLDVVEILL--GADPA 153
                  T+ + AV    + +V   L       
Sbjct: 125 -GKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF 156

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 49.8 bits (120), Expect = 4e-08
 Identities = 8/94 (8%), Positives = 25/94 (26%), Gaps = 30/94 (31%)

Query: 70  LLLQ----VNAK----GDSPLHVAARYGHAAVVGALIEF-AEKQPGQELESGVKSTTRYM 120
           L ++    +         +  + A      ++V   +                       
Sbjct: 113 LFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF---------------- 156

Query: 121 LGMKNDEEDTALHEAVQSGSLDVVEILL--GADP 152
                    + +H  +++G +D++ +LL      
Sbjct: 157 ---DLAILLSCIHITIKNGHVDMMILLLDYMTST 187

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 49.4 bits (119), Expect = 6e-08
 Identities = 19/92 (20%), Positives = 28/92 (30%), Gaps = 29/92 (31%)

Query: 70  LLLQ---VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGM 123
             L           G S  + A    +  +V  L+            +G           
Sbjct: 17  SFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLL-----------NAGAL--------- 56

Query: 124 KNDEE-DTALHEAVQSGSLDVVEILL--GADP 152
           KN  E +  LH+A       +V+ILL  G D 
Sbjct: 57  KNLLENEFPLHQAATLEDTKIVKILLFSGLDD 88

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 47.5 bits (114), Expect = 3e-07
 Identities = 9/81 (11%), Positives = 25/81 (30%), Gaps = 20/81 (24%)

Query: 75  NAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT-ALH 133
            A   S +H+  + GH  ++  L++                         N       + 
Sbjct: 158 LAILLSCIHITIKNGHVDMMILLLD-----------YMTS------TNTNNSLLFIPDIK 200

Query: 134 EAVQSGSLDVVEILL--GADP 152
            A+ +  +++++ L     + 
Sbjct: 201 LAIDNKDIEMLQALFKYDINI 221

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 41.4 bits (98), Expect = 4e-05
 Identities = 8/86 (9%), Positives = 22/86 (25%), Gaps = 30/86 (34%)

Query: 73  QVNAK---GDSP-LHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEE 128
             N        P + +A       ++ AL +                         +   
Sbjct: 186 STNTNNSLLFIPDIKLAIDNKDIEMLQALFK------------------------YDINI 221

Query: 129 DTALHEAVQSGSLDVVEILL--GADP 152
            +A  E V     ++ ++++    + 
Sbjct: 222 YSANLENVLLDDAEIAKMIIEKHVEY 247

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 54.3 bits (132), Expect = 5e-10
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 22/83 (26%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
           VNA    G +PL +AA +GH  +V  L++      G ++ +             + E  T
Sbjct: 73  VNAVDHAGMTPLRLAALFGHLEIVEVLLKN-----GADVNA------------NDMEGHT 115

Query: 131 ALHEAVQSGSLDVVEILL--GAD 151
            LH A   G L++VE+LL  GAD
Sbjct: 116 PLHLAAMFGHLEIVEVLLKNGAD 138

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 50.8 bits (123), Expect = 8e-09
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 19/79 (24%)

Query: 75  NAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHE 134
            +     L  AAR G    V  L+       G ++ +            ++    T LH 
Sbjct: 11  GSDLGKKLLEAARAGRDDEVRILMAN-----GADVNA------------EDASGWTPLHL 53

Query: 135 AVQSGSLDVVEILL--GAD 151
           A  +G L++VE+LL  GAD
Sbjct: 54  AAFNGHLEIVEVLLKNGAD 72

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 50.4 bits (122), Expect = 1e-08
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 20/78 (25%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
           VNA    G +PLH+AA +GH  +V  L++      G ++ +            ++    T
Sbjct: 106 VNANDMEGHTPLHLAAMFGHLEIVEVLLKN-----GADVNA------------QDKFGKT 148

Query: 131 ALHEAVQSGSLDVVEILL 148
           A   ++ +G+ D+ EIL 
Sbjct: 149 AFDISIDNGNEDLAEILQ 166

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 55.2 bits (134), Expect = 6e-10
 Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 27/93 (29%)

Query: 70  LLLQ----VNAK----GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYML 121
           LL      +N      G +PLH+A     A+V+  L++      G +  +          
Sbjct: 176 LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA-----GADPTA---------- 220

Query: 122 GMKNDEEDTALHEAVQSGSLDVVEILL--GADP 152
             +     T L  A+   +  +  +L   GA  
Sbjct: 221 --RMYGGRTPLGSALLRPNPILARLLRAHGAPE 251

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 54.5 bits (132), Expect = 1e-09
 Identities = 22/81 (27%), Positives = 29/81 (35%), Gaps = 16/81 (19%)

Query: 74  VNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALH 133
           V   GD+ LH+A  + H   +  L+                      L ++ND   TALH
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLL-----------GFSAGHEY---LDLQNDLGQTALH 50

Query: 134 EAVQSGSLDVVEILL--GADP 152
            A   G    VE L   GA  
Sbjct: 51  LAAILGEASTVEKLYAAGAGV 71

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 52.9 bits (128), Expect = 4e-09
 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 33/90 (36%)

Query: 74  VNAK---GDSPLHVAARYGHAAVV------GALIEFAEKQPGQELESGVKSTTRYMLGMK 124
           + A+   G +PLHVA  +  A +V      GA +   E   G+                 
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGR----------------- 193

Query: 125 NDEEDTALHEAVQSGSLDVVEILL--GADP 152
                T LH AV++ +  V+E+LL  GADP
Sbjct: 194 -----TPLHLAVEAQAASVLELLLKAGADP 218

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 52.2 bits (126), Expect = 6e-09
 Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 22/85 (25%)

Query: 73  QVNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEED 129
            ++ +   G + LH+AA  G A+ V  L             +G        + +      
Sbjct: 37  YLDLQNDLGQTALHLAAILGEASTVEKLYA-----------AGAG------VLVAERGGH 79

Query: 130 TALHEAVQSGSLDVVEILL--GADP 152
           TALH A +  +     +LL      
Sbjct: 80  TALHLACRVRAHTCACVLLQPRPSH 104

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 49.9 bits (120), Expect = 5e-08
 Identities = 19/113 (16%), Positives = 27/113 (23%), Gaps = 35/113 (30%)

Query: 74  VNAK---GDSPLHVAARYGHAAVV------GALIEFAEKQPGQELESGVKSTTRYM---- 120
           V      G + LH+A R                                   T +     
Sbjct: 71  VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAV 130

Query: 121 --------------------LGMKNDEEDTALHEAVQSGSLDVVEILL--GAD 151
                               L  +N +  T LH AV     ++V +L   GAD
Sbjct: 131 DSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD 183

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 47.9 bits (115), Expect = 2e-07
 Identities = 9/82 (10%), Positives = 19/82 (23%), Gaps = 22/82 (26%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEF-AEKQPGQELESGVKSTTRYMLGMKNDEED 129
             A+   G +PL  A    +  +   L    A +                       ++ 
Sbjct: 218 PTARMYGGRTPLGSALLRPNPILARLLRAHGAPEP------------------EDGGDKL 259

Query: 130 TALHEAVQSGSLDVVEILLGAD 151
           +    +      D  +     D
Sbjct: 260 SPCSSSGSDSDSDNRDEGDEYD 281

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 39.8 bits (94), Expect = 1e-04
 Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 121 LGMKNDEEDTALHEAVQSGSLDVVEILL--GADPA 153
            G   ++ DTALH AV       ++ LL   A   
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHE 36

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 54.4 bits (132), Expect = 9e-10
 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 22/84 (26%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
           VNA    G S LH AA   +      L++           +G          M+N+ E+T
Sbjct: 150 VNAVDDLGKSALHWAAAVNNVDAAVVLLK-----------NGAN------KDMQNNREET 192

Query: 131 ALHEAVQSGSLDVVEILL--GADP 152
            L  A + GS +  ++LL   A+ 
Sbjct: 193 PLFLAAREGSYETAKVLLDHFANR 216

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 49.0 bits (118), Expect = 7e-08
 Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 20/114 (17%)

Query: 38  LHV---NIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVV 94
           L +   +     T N E E  +   +   +    SL  Q +  G++ LH+AARY  +   
Sbjct: 14  LMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAA 73

Query: 95  GALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILL 148
             L+E        +               +++   T LH AV + +  V +IL+
Sbjct: 74  KRLLEA-----SADANI------------QDNMGRTPLHAAVSADAQGVFQILI 110

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 48.6 bits (117), Expect = 1e-07
 Identities = 13/85 (15%), Positives = 26/85 (30%), Gaps = 24/85 (28%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIE-FAEKQPGQELESGVKSTTRYMLGMKNDEED 129
            + +    ++PL +AAR G       L++ FA                     + +  + 
Sbjct: 183 KDMQNNREETPLFLAAREGSYETAKVLLDHFAN------------------RDITDHMDR 224

Query: 130 TALHEAVQSGSLDVVEILL--GADP 152
                A +    D+V +L       
Sbjct: 225 LPRDIAQERMHHDIVRLLDLEHHHH 249

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 48.6 bits (117), Expect = 1e-07
 Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 22/91 (24%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLG-------M 123
           VN +   G +PL +A+  G     G   E          E    +     +         
Sbjct: 3   VNVRGPDGFTPLMIASCSGGGLETGNSEE----------EEDAPAVISDFIYQGASLHNQ 52

Query: 124 KNDEEDTALHEAVQSGSLDVVEILL--GADP 152
            +   +TALH A +    D  + LL   AD 
Sbjct: 53  TDRTGETALHLAARYSRSDAAKRLLEASADA 83

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 54.5 bits (132), Expect = 1e-09
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 9/88 (10%)

Query: 74  VNAK-GDSPLHVAARYGHAAVVGALIEFAEKQPGQEL----ESGVKSTTRYMLGMKNDEE 128
            +   G  P+H+A       +V AL+E A+++         E   +        +K+ + 
Sbjct: 79  HSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKG 138

Query: 129 DTALHEAVQSG--SLDVVEILL--GADP 152
            TALH  V  G   L++++IL+  GA P
Sbjct: 139 QTALHWCVGLGPEYLEMIKILVQLGASP 166

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 52.9 bits (128), Expect = 5e-09
 Identities = 22/83 (26%), Positives = 29/83 (34%), Gaps = 22/83 (26%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
                      +HVAAR G    V  LIE           +GV         ++N    T
Sbjct: 13  RIKSDDENMEKIHVAARKGQTDEVRRLIE-----------TGVS------PTIQNRFGCT 55

Query: 131 ALHEAVQSGSLDVVEILL--GAD 151
           ALH A + G +D  + L   G  
Sbjct: 56  ALHLACKFGCVDTAKYLASVGEV 78

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 52.6 bits (127), Expect = 6e-09
 Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 33/122 (27%)

Query: 38  LHVNIIASYTQNKEGESVSTKFVELVLETCPSLL-LQVNAK---GDSPLHVAARYGHAAV 93
           L     A   +N+E        ++L+++T PS   L+++     G+S LH A       V
Sbjct: 177 LM---RAMEFRNRE-------ALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDV 226

Query: 94  VGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILL--GAD 151
               +E      G ++              +++E    L+ +V++  + + + LL     
Sbjct: 227 AMRFVEM-----GIDVNM------------EDNEHTVPLYLSVRAAMVLLTKELLQKTDV 269

Query: 152 PA 153
             
Sbjct: 270 FL 271

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 52.6 bits (127), Expect = 6e-09
 Identities = 11/93 (11%), Positives = 31/93 (33%), Gaps = 15/93 (16%)

Query: 70  LLLQVNAK-GDSPLHVAARYGHAAVVGALIEFAEKQPGQ-------ELESGVKSTTRYML 121
            L++   + G  P  +        V          + GQ        L        + ++
Sbjct: 102 ALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCK-GQTALHWCVGLGPEYLEMIKILV 160

Query: 122 G------MKNDEEDTALHEAVQSGSLDVVEILL 148
                   K+  ++T L  A++  + + +++++
Sbjct: 161 QLGASPTAKDKADETPLMRAMEFRNREALDLMM 193

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 49.9 bits (120), Expect = 6e-08
 Identities = 14/92 (15%), Positives = 27/92 (29%), Gaps = 30/92 (32%)

Query: 70  LLLQ----VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLG 122
            L++       +   G + LH+A ++G       L              G          
Sbjct: 38  RLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLAS-----------VGEV-------- 78

Query: 123 MKNDEED-TALHEAVQSGSLDVVEILL--GAD 151
             +       +H AV +   D+V  L+    +
Sbjct: 79  -HSLWHGQKPIHLAVMANKTDLVVALVEGAKE 109

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 47.6 bits (114), Expect = 3e-07
 Identities = 10/83 (12%), Positives = 18/83 (21%), Gaps = 19/83 (22%)

Query: 72  LQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTA 131
           L         +  AA      V+  L E        E+                +     
Sbjct: 284 LPDRVVWLDFVPAAADPSKQEVLQLLQEK-----LDEVVR------------SLNTGAGG 326

Query: 132 LHEAVQSGSLDVVEILL--GADP 152
             +  +  +  V  + L   A  
Sbjct: 327 AVKRKKKAAPAVKRMKLAPSAPV 349

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 54.4 bits (132), Expect = 1e-09
 Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 22/84 (26%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
           VN K     +PLHVAA   H  V+  L +            G K      +   +    T
Sbjct: 240 VNEKNKDFMTPLHVAAERAHNDVMEVLHK-----------HGAK------MNALDSLGQT 282

Query: 131 ALHEAVQSGSLDVVEILL--GADP 152
           ALH A  +G L    +LL  G+DP
Sbjct: 283 ALHRAALAGHLQTCRLLLSYGSDP 306

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 52.5 bits (127), Expect = 7e-09
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 22/83 (26%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
            +A      +PLH+AA Y    +V  L++      G ++ +            K+     
Sbjct: 51  CHASDGRKSTPLHLAAGYNRVRIVQLLLQH-----GADVHA------------KDKGGLV 93

Query: 131 ALHEAVQSGSLDVVEILL--GAD 151
            LH A   G  +V E+LL  GA 
Sbjct: 94  PLHNACSYGHYEVTELLLKHGAC 116

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 52.1 bits (126), Expect = 8e-09
 Identities = 15/90 (16%), Positives = 22/90 (24%), Gaps = 20/90 (22%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
           VNA      +PLH AA      V   L+             G   T        N    +
Sbjct: 117 VNAMDLWQFTPLHEAASKNRVEVCSLLLS-----------HGADPTL------VNCHGKS 159

Query: 131 ALHEAVQSGSLDVVEILLGADPAFPYSANG 160
           A+  A      + +            +   
Sbjct: 160 AVDMAPTPELRERLTYEFKGHSLLQAAREA 189

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 43.6 bits (104), Expect = 6e-06
 Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 21/83 (25%)

Query: 74  VNAKGD---SPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
               G+     L  AAR G+   + AL+              V           +  + T
Sbjct: 17  AVLTGEYKKDELLEAARSGNEEKLMALL----------TPLNVN------CHASDGRKST 60

Query: 131 ALHEAVQSGSLDVVEILL--GAD 151
            LH A     + +V++LL  GAD
Sbjct: 61  PLHLAAGYNRVRIVQLLLQHGAD 83

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 54.0 bits (131), Expect = 1e-09
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 22/84 (26%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
           VN +   G +P+  A  Y H  +V  L+       G ++              +++EE+ 
Sbjct: 104 VNCQDDGGWTPMIWATEYKHVDLVKLLLSK-----GSDINI------------RDNEENI 146

Query: 131 ALHEAVQSGSLDVVEILL--GADP 152
            LH A  SG +D+ EILL    D 
Sbjct: 147 CLHWAAFSGCVDIAEILLAAKCDL 170

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 53.6 bits (130), Expect = 2e-09
 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 22/83 (26%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
              +     SPLH AA  GH  +   L++           +G        +   ++++ T
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQ-----------AGAN------IDTCSEDQRT 46

Query: 131 ALHEAVQSGSLDVVEILL--GAD 151
            L EA ++  L+ V+ L+  GA 
Sbjct: 47  PLMEAAENNHLEAVKYLIKAGAL 69

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 53.2 bits (129), Expect = 2e-09
 Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 24/86 (27%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEF-AEKQPGQELESGVKSTTRYMLGMKNDEED 129
           ++A    GDSPLH+AAR      V   +   ++                    +KN E +
Sbjct: 170 LHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVT------------------LKNKEGE 211

Query: 130 TALHEAVQSGSLDVVEILL--GADPA 153
           T L  A  +  +     +     D A
Sbjct: 212 TPLQCASLNSQVWSALQMSKALQDSA 237

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 50.5 bits (122), Expect = 2e-08
 Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 23/91 (25%)

Query: 64  LETCPSLLLQ---VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTT 117
           ++ C  L+     ++       +PL  AA   H   V  LI+      G  ++       
Sbjct: 24  VDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA-----GALVDP------ 72

Query: 118 RYMLGMKNDEEDTALHEAVQSGSLDVVEILL 148
                 K+ E  T LH A + G  +VV+ LL
Sbjct: 73  ------KDAEGSTCLHLAAKKGHYEVVQYLL 97

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 54.0 bits (131), Expect = 1e-09
 Identities = 24/97 (24%), Positives = 32/97 (32%), Gaps = 24/97 (24%)

Query: 64  LETCPSLLLQ---VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTT 117
            E C  L+     V        + LH AA      +V   I       G  ++       
Sbjct: 22  YERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISK-----GAIVDQL----- 71

Query: 118 RYMLGMKNDEEDTALHEAVQSGSLDVVEILL--GADP 152
                   D   T LH A + G L +V  L+  GADP
Sbjct: 72  ------GGDLNSTPLHWATRQGHLSMVVQLMKYGADP 102

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 53.6 bits (130), Expect = 2e-09
 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 25/86 (29%)

Query: 74  VNAK----GDSPLHVAARYGHAAVVGALIEF-AEKQPGQELESGVKSTTRYMLGMKNDEE 128
           V+        +PLH A R GH ++V  L+++ A+                    + + E 
Sbjct: 68  VDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPS------------------LIDGEG 109

Query: 129 DTALHEAVQSGSLDVVEILL--GADP 152
            + +H A Q G   +V  L+  G D 
Sbjct: 110 CSCIHLAAQFGHTSIVAYLIAKGQDV 135

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 53.2 bits (129), Expect = 2e-09
 Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 22/85 (25%)

Query: 73  QVNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEED 129
            +          +  A +YG       L+E           +G        +   + E  
Sbjct: 1   HMTHIDDYSTWDIVKATQYGIYERCRELVE-----------AGYD------VRQPDKENV 43

Query: 130 TALHEAVQSGSLDVVEILL--GADP 152
           T LH A  +  +D+V+  +  GA  
Sbjct: 44  TLLHWAAINNRIDLVKYYISKGAIV 68

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 52.1 bits (126), Expect = 7e-09
 Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 21/81 (25%)

Query: 74  VNAK----GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEED 129
           VN       ++ LH A   G+  V+  L+E      G  +++            +N + +
Sbjct: 169 VNLGDKYHKNTALHWAVLAGNTTVISLLLEA-----GANVDA------------QNIKGE 211

Query: 130 TALHEAVQSGSLDVVEILLGA 150
           +AL  A Q  ++ ++  L  A
Sbjct: 212 SALDLAKQRKNVWMINHLQEA 232

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 48.2 bits (116), Expect = 2e-07
 Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 34/91 (37%)

Query: 74  VNAK---GDSPLHVAARYGHAAVV-------GALIEFAEKQPGQELESGVKSTTRYMLGM 123
           V+     G +PL  AA   H+             +   +K                    
Sbjct: 135 VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKN---------------- 178

Query: 124 KNDEEDTALHEAVQSGSLDVVEILL--GADP 152
                 TALH AV +G+  V+ +LL  GA+ 
Sbjct: 179 ------TALHWAVLAGNTTVISLLLEAGANV 203

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 52.0 bits (126), Expect = 2e-09
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 22/83 (26%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
           VNAK   G +PL++A  +GH  +V  L++      G ++ +             +    T
Sbjct: 40  VNAKDEYGLTPLYLATAHGHLEIVEVLLKN-----GADVNA------------VDAIGFT 82

Query: 131 ALHEAVQSGSLDVVEILL--GAD 151
            LH A   G L++ E+LL  GAD
Sbjct: 83  PLHLAAFIGHLEIAEVLLKHGAD 105

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 47.8 bits (115), Expect = 6e-08
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 19/79 (24%)

Query: 75  NAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHE 134
            +     L  AAR G    V  L+       G ++ +            K++   T L+ 
Sbjct: 11  GSDLGKKLLEAARAGQDDEVRILMAN-----GADVNA------------KDEYGLTPLYL 53

Query: 135 AVQSGSLDVVEILL--GAD 151
           A   G L++VE+LL  GAD
Sbjct: 54  ATAHGHLEIVEVLLKNGAD 72

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 47.8 bits (115), Expect = 7e-08
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 20/78 (25%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
           VNA    G +PLH+AA  GH  +   L++      G ++ +            ++    T
Sbjct: 73  VNAVDAIGFTPLHLAAFIGHLEIAEVLLKH-----GADVNA------------QDKFGKT 115

Query: 131 ALHEAVQSGSLDVVEILL 148
           A   ++ +G+ D+ EIL 
Sbjct: 116 AFDISIGNGNEDLAEILQ 133

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 52.8 bits (128), Expect = 2e-09
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 22/82 (26%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
            + K   G + +H AAR G    +  L+EF       ++              +++E + 
Sbjct: 63  PDLKDRTGFAVIHDAARAGFLDTLQTLLEF-----QADVNI------------EDNEGNL 105

Query: 131 ALHEAVQSGSLDVVEILL--GA 150
            LH A + G L VVE L+   A
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTA 127

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 50.1 bits (121), Expect = 1e-08
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 23/83 (27%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEF-AEKQPGQELESGVKSTTRYMLGMKNDEED 129
           VN +   G+ PLH+AA+ GH  VV  L++  A                   +G +N + D
Sbjct: 96  VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN-----------------VGHRNHKGD 138

Query: 130 TALHEAVQSGSLDVVEILL--GA 150
           TA   A   G  +VV ++   GA
Sbjct: 139 TACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 47.4 bits (114), Expect = 1e-07
 Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 23/83 (27%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
           VNA+   G + L V    G+  +   L+       G   +             K+     
Sbjct: 31  VNAQNGFGRTALQVMK-LGNPEIARRLLLR-----GANPDL------------KDRTGFA 72

Query: 131 ALHEAVQSGSLDVVEILL--GAD 151
            +H+A ++G LD ++ LL   AD
Sbjct: 73  VIHDAARAGFLDTLQTLLEFQAD 95

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 43.1 bits (103), Expect = 5e-06
 Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 20/78 (25%)

Query: 77  KGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAV 136
              + L  AA  G    + +L++         + +            +N    TAL    
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQN-----NVNVNA------------QNGFGRTALQVM- 45

Query: 137 QSGSLDVVEILL--GADP 152
           + G+ ++   LL  GA+P
Sbjct: 46  KLGNPEIARRLLLRGANP 63

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 53.2 bits (129), Expect = 2e-09
 Identities = 31/160 (19%), Positives = 54/160 (33%), Gaps = 49/160 (30%)

Query: 5   LYEAAAKGVIEPFNQLAIDRQLGSLVIHKKN----SVLHVNIIASYTQNKEGESVSTKFV 60
           L+ A +      F  L I     +  +  +     + L    +A+    +         +
Sbjct: 62  LHAAVSADAQGVFQIL-IRN--RATDLDARMHDGTTPLI---LAARLAVEG-------ML 108

Query: 61  ELVLETCPSLLLQ---VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVK 114
           E        L+     VNA    G S LH AA   +      L++           +G  
Sbjct: 109 ED-------LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK-----------NGAN 150

Query: 115 STTRYMLGMKNDEEDTALHEAVQSGSLDVVEILL--GADP 152
                   M+N+ E+T L  A + GS +  ++LL   A+ 
Sbjct: 151 ------KDMQNNREETPLFLAAREGSYETAKVLLDHFANR 184

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 52.0 bits (126), Expect = 5e-09
 Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 21/84 (25%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
            N +   G +PLH A       V   LI         +L++            +  +  T
Sbjct: 51  ANIQDNMGRTPLHAAVSADAQGVFQILIR----NRATDLDA------------RMHDGTT 94

Query: 131 ALHEAVQSGSLDVVEILL--GADP 152
            L  A +     ++E L+   AD 
Sbjct: 95  PLILAARLAVEGMLEDLINSHADV 118

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 47.8 bits (115), Expect = 2e-07
 Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 24/92 (26%)

Query: 64  LETCPSLLLQ----VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKST 116
                  + Q     N     G++ LH+AARY  +     L+E        +        
Sbjct: 4   PAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-----SADANI----- 53

Query: 117 TRYMLGMKNDEEDTALHEAVQSGSLDVVEILL 148
                  +++   T LH AV + +  V +IL+
Sbjct: 54  -------QDNMGRTPLHAAVSADAQGVFQILI 78

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 47.8 bits (115), Expect = 2e-07
 Identities = 11/83 (13%), Positives = 24/83 (28%), Gaps = 22/83 (26%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
            + +    ++PL +AAR G       L++          +              +  +  
Sbjct: 151 KDMQNNREETPLFLAAREGSYETAKVLLDH-----FANRDI------------TDHMDRL 193

Query: 131 ALHEAVQSGSLDVVEILL--GAD 151
               A +    D+V +L      
Sbjct: 194 PRDIAQERMHHDIVRLLDEYNLV 216

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 38.2 bits (90), Expect = 5e-04
 Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 2/31 (6%)

Query: 124 KNDEEDTALHEAVQSGSLDVVEILL--GADP 152
            +   +TALH A +    D  + LL   AD 
Sbjct: 21  TDRTGETALHLAARYSRSDAAKRLLEASADA 51

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 52.8 bits (128), Expect = 2e-09
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 22/83 (26%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
           VN K   G +PL  +  +G++ +   L+E      G  +              +N E +T
Sbjct: 94  VNTKDFSGKTPLMWSIIFGYSEMSYFLLEH-----GANVND------------RNLEGET 136

Query: 131 ALHEAVQSGSLDVVEILL--GAD 151
            L  A + G  ++V+ LL  GAD
Sbjct: 137 PLIVASKYGRSEIVKKLLELGAD 159

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 51.2 bits (124), Expect = 9e-09
 Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 22/85 (25%)

Query: 72  LQVNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEE 128
              N +     +PL VA   G    +  L+E        +LE             K+ E 
Sbjct: 26  FLRNYRDSYNRTPLMVACMLGMENAIDKLVEN-----FDKLED------------KDIEG 68

Query: 129 DTALHEAVQSGSLDVVEILL--GAD 151
            TAL  AV++  L + E LL  G++
Sbjct: 69  STALIWAVKNNRLGIAEKLLSKGSN 93

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 48.5 bits (117), Expect = 7e-08
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 20/78 (25%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
           VN +   G++PL VA++YG + +V  L+E      G ++ +            ++    T
Sbjct: 127 VNDRNLEGETPLIVASKYGRSEIVKKLLEL-----GADISA------------RDLTGLT 169

Query: 131 ALHEAVQSGSLDVVEILL 148
           A   A   G  +V++I  
Sbjct: 170 AEASARIFGRQEVIKIFT 187

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 46.6 bits (112), Expect = 4e-07
 Identities = 7/80 (8%), Positives = 18/80 (22%), Gaps = 25/80 (31%)

Query: 74  VNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALH 133
           ++  G+    +         +  L                          ++    T L 
Sbjct: 4   MDKNGEIVEKIKDEKSINQNLDFLRN-----------------------YRDSYNRTPLM 40

Query: 134 EAVQSGSLDVVEILL--GAD 151
            A   G  + ++ L+     
Sbjct: 41  VACMLGMENAIDKLVENFDK 60

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 53.0 bits (128), Expect = 3e-09
 Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 23/83 (27%)

Query: 74  VNAK--GDSPLHVAARYGHAAVVGALIEF-AEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
           V       + L  ++  G   +V  +I    +                    + NDE  T
Sbjct: 31  VKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPS------------------LPNDEGIT 72

Query: 131 ALHEAVQSGSLDVVEILL--GAD 151
           ALH AV +G  ++V+ L+  G +
Sbjct: 73  ALHNAVCAGHTEIVKFLVQFGVN 95

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 51.8 bits (125), Expect = 8e-09
 Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 22/83 (26%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
            +     G + LH A   GH  +V  L++F     G  + +             + +  T
Sbjct: 63  PSLPNDEGITALHNAVCAGHTEIVKFLVQF-----GVNVNA------------ADSDGWT 105

Query: 131 ALHEAVQSGSLDVVEILL--GAD 151
            LH A    ++ V + L+  GA 
Sbjct: 106 PLHCAASCNNVQVCKFLVESGAA 128

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 49.5 bits (119), Expect = 5e-08
 Identities = 12/77 (15%), Positives = 20/77 (25%), Gaps = 20/77 (25%)

Query: 78  GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQ 137
           G   L    R          I       G  ++              N      L ++  
Sbjct: 5   GQVSLPPGKRTNLRKTGSERIAH-----GMRVK-------------FNPLPLALLLDSSL 46

Query: 138 SGSLDVVEILL--GADP 152
            G  D+V+ ++    DP
Sbjct: 47  EGEFDLVQRIIYEVDDP 63

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 20/87 (22%), Positives = 29/87 (33%), Gaps = 25/87 (28%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESG--VKSTTRYMLGMKNDEE 128
           VNA    G +PLH AA   +  V   L+E           SG  V + T       +D +
Sbjct: 96  VNAADSDGWTPLHCAASCNNVQVCKFLVE-----------SGAAVFAMT------YSDMQ 138

Query: 129 -DTALHEAVQSGSLDVVEILL--GADP 152
                 E ++ G     + L       
Sbjct: 139 TAADKCEEMEEGYTQCSQFLYGVQEKM 165

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 52.1 bits (126), Expect = 8e-09
 Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 22/84 (26%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
           +N     G + LH A    +  +V  L+E      G  +               ++E   
Sbjct: 66  INYANVDGLTALHQACIDDNVDMVKFLVEN-----GANINQ------------PDNEGWI 108

Query: 131 ALHEAVQSGSLDVVEILL--GADP 152
            LH A   G LD+ E L+  GA  
Sbjct: 109 PLHAAASCGYLDIAEYLISQGAHV 132

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 51.7 bits (125), Expect = 1e-08
 Identities = 20/84 (23%), Positives = 29/84 (34%), Gaps = 22/84 (26%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
                  G + LHVAA  G+  V+  LI     Q   ++              K+ +  T
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLKLLI-----QARYDVNI------------KDYDGWT 234

Query: 131 ALHEAVQSGSLDVVEILL--GADP 152
            LH A   G  +   IL+    D 
Sbjct: 235 PLHAAAHWGKEEACRILVENLCDM 258

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 51.0 bits (123), Expect = 2e-08
 Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 19/101 (18%)

Query: 70  LLLQ----VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGV----KSTTR 118
            L+     V A    GD+PL +A       ++   +           +       +   +
Sbjct: 124 YLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQ 183

Query: 119 YMLG------MKNDEEDTALHEAVQSGSLDVVEILL--GAD 151
           ++               TALH A   G  +V+++L+    D
Sbjct: 184 WLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD 224

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 49.8 bits (120), Expect = 5e-08
 Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 17/94 (18%)

Query: 75  NAKGDSPLHVAARYGHAAVVGALIEF-----AEKQPGQEL----ESGVKSTTRYMLG--- 122
           +AK      +    G    +   +        +   G        SG       +L    
Sbjct: 5   DAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGA 64

Query: 123 ---MKNDEEDTALHEAVQSGSLDVVEILL--GAD 151
                N +  TALH+A    ++D+V+ L+  GA+
Sbjct: 65  DINYANVDGLTALHQACIDDNVDMVKFLVENGAN 98

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 47.9 bits (115), Expect = 2e-07
 Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 23/84 (27%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
           +N     G  PLH AA  G+  +   LI       G  + +             N E DT
Sbjct: 99  INQPDNEGWIPLHAAASCGYLDIAEYLI-----SQGAHVGA------------VNSEGDT 141

Query: 131 ALHEAVQSGSLDVVEILL---GAD 151
            L  A +    ++++  +   G D
Sbjct: 142 PLDIAEEEAMEELLQNEVNRQGVD 165

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 40.9 bits (97), Expect = 6e-05
 Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 24/86 (27%)

Query: 70  LLLQ----VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLG 122
           LL+Q    VN K   G +PLH AA +G       L+E        ++E+           
Sbjct: 217 LLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN-----LCDMEA----------- 260

Query: 123 MKNDEEDTALHEAVQSGSLDVVEILL 148
             N    TA   A +     + E+  
Sbjct: 261 -VNKVGQTAFDVADEDILGYLEELQK 285

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 51.9 bits (124), Expect = 1e-08
 Identities = 17/79 (21%), Positives = 24/79 (30%), Gaps = 15/79 (18%)

Query: 74  VNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALH 133
           + A+      +AA  GH  V+  L E                       M   E   A  
Sbjct: 124 IQAENYQAFRLAAENGHLHVLNRLCEL-----APTEIM----------AMIQAENYHAFR 168

Query: 134 EAVQSGSLDVVEILLGADP 152
            A ++G L V+  L    P
Sbjct: 169 LAAENGHLHVLNRLCELAP 187

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 43.4 bits (102), Expect = 9e-06
 Identities = 9/75 (12%), Positives = 19/75 (25%), Gaps = 20/75 (26%)

Query: 74  VNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALH 133
           +    +  L +A R G+      L+                        +    +    +
Sbjct: 315 IPGDANELLRLALRLGNQGACALLLSIP--------------------SVLALTKANNYY 354

Query: 134 EAVQSGSLDVVEILL 148
                G LD+  + L
Sbjct: 355 INETGGRLDLRAVAL 369

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 43.4 bits (102), Expect = 1e-05
 Identities = 19/85 (22%), Positives = 27/85 (31%), Gaps = 16/85 (18%)

Query: 74  VNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALH 133
           + A+      +AA  GH  V+  L E A  +                  M   E   A  
Sbjct: 159 IQAENYHAFRLAAENGHLHVLNRLCELAPTEATA---------------MIQAENYYAFR 203

Query: 134 E-AVQSGSLDVVEILLGADPAFPYS 157
             AV  G  +V+  LL       Y+
Sbjct: 204 WAAVGRGHHNVINFLLDCPVMLAYA 228

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 40.7 bits (95), Expect = 7e-05
 Identities = 10/73 (13%), Positives = 21/73 (28%), Gaps = 9/73 (12%)

Query: 76  AKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEA 135
            +G   L    R     ++  +         + L S               + +  L  A
Sbjct: 276 LQGFYMLRNLIRRNDEVLLDDI---------RFLLSIPGIKALAPTATIPGDANELLRLA 326

Query: 136 VQSGSLDVVEILL 148
           ++ G+     +LL
Sbjct: 327 LRLGNQGACALLL 339

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 51.1 bits (123), Expect = 1e-08
 Identities = 16/83 (19%), Positives = 25/83 (30%), Gaps = 22/83 (26%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
            +     G + LH A    + ++V  LI       G  + S             +    T
Sbjct: 47  PSQPNEEGITALHNAICGANYSIVDFLITA-----GANVNS------------PDSHGWT 89

Query: 131 ALHEAVQSGSLDVVEILL--GAD 151
            LH A       +   L+  GA 
Sbjct: 90  PLHCAASCNDTVICMALVQHGAA 112

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 48.8 bits (117), Expect = 7e-08
 Identities = 17/88 (19%), Positives = 26/88 (29%), Gaps = 25/88 (28%)

Query: 73  QVNAK------GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKND 126
                          L  AA  G   VV   ++                         N+
Sbjct: 10  SPRKARRARLNPLVLLLDAALTGELEVVQQAVK-----------EMND------PSQPNE 52

Query: 127 EEDTALHEAVQSGSLDVVEILL--GADP 152
           E  TALH A+   +  +V+ L+  GA+ 
Sbjct: 53  EGITALHNAICGANYSIVDFLITAGANV 80

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 50.9 bits (122), Expect = 2e-08
 Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 15/111 (13%)

Query: 50  KEGESVSTKFVELVLETCPSLLLQVNAK----GDSPLHVA---ARYGHAAVVGALIEFAE 102
            +      + +   L+     L     K    G + L  A      G    +  L++ A 
Sbjct: 22  AQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVAR 81

Query: 103 KQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILL--GAD 151
           K    +       T  Y  G       TALH A++  ++ +V +L+  GAD
Sbjct: 82  KTDSLKQFVNASYTDSYYKGQ------TALHIAIERRNMTLVTLLVENGAD 126

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 15/86 (17%)

Query: 75  NAKGDSPLHVAARYGHAAVVGALIEF-AEKQPGQELESGVKSTTRYMLGMKNDEED---- 129
             KG + LH+A    +  +V  L+E  A+ Q          +   +    K         
Sbjct: 98  YYKGQTALHIAIERRNMTLVTLLVENGADVQ--------AAANGDFFKKTKGRPGFYFGE 149

Query: 130 TALHEAVQSGSLDVVEILL--GADPA 153
             L  A  +  L +V+ LL     PA
Sbjct: 150 LPLSLAACTNQLAIVKFLLQNSWQPA 175

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 45.2 bits (107), Expect = 2e-06
 Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 14/87 (16%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQP----GQELESGVKSTTRYMLGMKND 126
           ++A+   G++ LH         V       +        G +L   +K        + N 
Sbjct: 177 ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEE-----ITNR 231

Query: 127 EEDTALHEAVQSGSLDVVEILL--GAD 151
           +  T L  A  SG + V+  +L     
Sbjct: 232 KGLTPLALAASSGKIGVLAYILQREIH 258

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 41.7 bits (98), Expect = 3e-05
 Identities = 24/147 (16%), Positives = 40/147 (27%), Gaps = 40/147 (27%)

Query: 5   LYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNS----VLHVNIIASYTQNKEGESV--STK 58
           L  AA    +     L +        I  ++S    VLH         +   ++    T 
Sbjct: 152 LSLAACTNQLAIVKFL-LQNSWQPADISARDSVGNTVLH---ALVEVADNTVDNTKFVTS 207

Query: 59  FVELVLETCPSLLLQV------NAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESG 112
               +L     L   +      N KG +PL +AA  G   V+  +++             
Sbjct: 208 MYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ------------- 254

Query: 113 VKSTTRYMLGMKNDEEDTALHEAVQSG 139
                      +   E    H A    
Sbjct: 255 -----------REIHEPECRHAAAHHH 270

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 49.7 bits (119), Expect = 3e-08
 Identities = 9/86 (10%), Positives = 19/86 (22%), Gaps = 19/86 (22%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVG--ALIEFAEKQPGQELESGVKSTTRYMLGMKNDEE 128
           + A        +                L +    Q G +L              K+   
Sbjct: 107 ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLI------------KDKWG 154

Query: 129 DTALHEAVQSGSLDVVEILL--GADP 152
            TAL    +      ++++       
Sbjct: 155 LTALEFVKRCQKPIALKMMEDYIKKY 180

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 40.4 bits (95), Expect = 6e-05
 Identities = 9/78 (11%), Positives = 24/78 (30%), Gaps = 14/78 (17%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
           + ++   G +      + G   + G   E  +      LE G        +         
Sbjct: 68  IKSRTKEGTTLFFPLFQGGGNDITGTT-ELCKIF----LEKGAD------ITALYKPYKI 116

Query: 131 ALHEAVQSGSLDVVEILL 148
            + + + +  +D  E++ 
Sbjct: 117 VVFKNIFNYFVDENEMIP 134

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 49.8 bits (119), Expect = 5e-08
 Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 11/82 (13%)

Query: 75  NAKGDSPLHVAA---RYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTA 131
            + G + L  A      G    +  L++ AEK               Y  G       TA
Sbjct: 43  PSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQ------TA 96

Query: 132 LHEAVQSGSLDVVEILL--GAD 151
           LH A++      VE+L+  GAD
Sbjct: 97  LHIAIERRCKHYVELLVEKGAD 118

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 46.7 bits (111), Expect = 5e-07
 Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 13/85 (15%)

Query: 75  NAKGDSPLHVAARYGHAAVVGALIE----FAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
             +G + LH+A        V  L+E       +  G+  +   +    Y         + 
Sbjct: 90  YYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFY-------FGEL 142

Query: 131 ALHEAVQSGSLDVVEILL--GADPA 153
            L  A  +    +V  L   G   A
Sbjct: 143 PLSLAACTNQPHIVHYLTENGHKQA 167

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 11/79 (13%), Positives = 28/79 (35%), Gaps = 6/79 (7%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVK-STTRYMLGMKNDEED 129
           +  +   G++ LH               +F  K     L    K      +  + N++  
Sbjct: 169 LRRQDSRGNTVLHALVAIADNTRENT--KFVTKMYDLLLIKCAKLFPDTNLEALLNNDGL 226

Query: 130 TALHEAVQSGSLDVVEILL 148
           + L  A ++G + + + ++
Sbjct: 227 SPLMMAAKTGKIGIFQHII 245

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 38.6 bits (90), Expect = 4e-04
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 35  NSVLHVNIIASYTQNKEGESVSTKFVELVLETC------PSLLLQVNAKGDSPLHVAARY 88
           N+VLH  +  +    +E     TK  +L+L  C       +L   +N  G SPL +AA+ 
Sbjct: 177 NTVLHALVAIAD-NTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKT 235

Query: 89  GHAAVVGALIE 99
           G   +   +I 
Sbjct: 236 GKIGIFQHIIR 246

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 48.2 bits (115), Expect = 1e-07
 Identities = 28/163 (17%), Positives = 48/163 (29%), Gaps = 19/163 (11%)

Query: 5   LYEAAAKGVIEPFNQL----AIDRQLGSLVIHKKNSV----LHVNIIASYTQNKEGESVS 56
           L+   ++GV E    L      + +  +   + + S     L   ++             
Sbjct: 6   LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPL 65

Query: 57  TKFVELVLETCPSLLLQVNAK---GDSPLHVAARYGHAAVVGALIEF-AEKQPGQELESG 112
            +  +      P +  Q   +   G S LH+A        V  L+E  A+          
Sbjct: 66  LQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVH-----LRA 120

Query: 113 VKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILL--GADPA 153
                +   G      +  L  A  +   DVV  LL     PA
Sbjct: 121 CGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPA 163

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 47.5 bits (113), Expect = 3e-07
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 4/78 (5%)

Query: 78  GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGM--KNDEEDTALHEA 135
           G+ PL +AA      VV  L+E   +    E    + +T  + L M   N  E++AL   
Sbjct: 136 GELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIH 195

Query: 136 VQSGSLDVVEILL--GAD 151
           +  G L +   L      
Sbjct: 196 MYDGLLQMGARLCPTVQL 213

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 45.5 bits (108), Expect = 1e-06
 Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 19/81 (23%)

Query: 75  NAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHE 134
           N+  +S L +    G   +   L         Q  E            + N +  T L  
Sbjct: 185 NSPENSALVIHMYDGLLQMGARLCP-----TVQLEE------------ISNHQGLTPLKL 227

Query: 135 AVQSGSLDVVEILL--GADPA 153
           A + G +++   +L      A
Sbjct: 228 AAKEGKIEIFRHILQREFSGA 248

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 38.2 bits (89), Expect = 4e-04
 Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 14/106 (13%)

Query: 5   LYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNS----VLHVNIIASYTQNKEGESV-STKF 59
           L  AA     +    L ++       +   +S    VLH   +     N    S      
Sbjct: 140 LSLAACTKQWDVVTYL-LENPHQPASLEATDSLGNTVLH--ALVMIADNSPENSALVIHM 196

Query: 60  VELVLETCPSLLLQ------VNAKGDSPLHVAARYGHAAVVGALIE 99
            + +L+    L          N +G +PL +AA+ G   +   +++
Sbjct: 197 YDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQ 242

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 44.1 bits (104), Expect = 4e-06
 Identities = 12/76 (15%), Positives = 22/76 (28%), Gaps = 19/76 (25%)

Query: 78  GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQ 137
                ++A       +   ++                          + +  TALH A  
Sbjct: 7   NIMICNLAYSGKLDELKERILAD-----KSLATR------------TDQDSRTALHWACS 49

Query: 138 SGSLDVVEILL--GAD 151
           +G  ++VE LL  G  
Sbjct: 50  AGHTEIVEFLLQLGVP 65

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 43.3 bits (102), Expect = 7e-06
 Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 20/79 (25%)

Query: 74  VNAK---GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDT 130
                    + LH A   GH  +V  L++      G  +              K+D   +
Sbjct: 33  ATRTDQDSRTALHWACSAGHTEIVEFLLQL-----GVPVND------------KDDAGWS 75

Query: 131 ALHEAVQSGSLDVVEILLG 149
            LH A  +G  ++V+ LL 
Sbjct: 76  PLHIAASAGXDEIVKALLV 94

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 41.9 bits (98), Expect = 3e-05
 Identities = 17/126 (13%), Positives = 40/126 (31%), Gaps = 20/126 (15%)

Query: 32  HKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAK---GDSPLHVAARY 88
               ++LH   I   +      + +  ++++++        +                  
Sbjct: 199 SMNRTILH--HIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNG 256

Query: 89  GHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILL 148
                +   ++                    ML  ++   DT L+ A + G++ +V+ LL
Sbjct: 257 ERKDSILENLDLKWII-------------ANMLNAQDSNGDTCLNIAARLGNISIVDALL 303

Query: 149 --GADP 152
             GADP
Sbjct: 304 DYGADP 309

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 37.7 bits (87), Expect = 7e-04
 Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 21/81 (25%)

Query: 63  VLETCPSLLLQVNAKGD----SPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTR 118
           V +  P+  L +N   D    +PLH      +  +V  L++            G      
Sbjct: 112 VNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH-----------GSN---- 156

Query: 119 YMLGMKNDEEDTALHEAVQSG 139
                 ++  ++ L +AV+S 
Sbjct: 157 --RLYGDNMGESCLVKAVKSV 175

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 37.7 bits (87), Expect = 8e-04
 Identities = 17/114 (14%), Positives = 39/114 (34%), Gaps = 20/114 (17%)

Query: 28  SLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAK---GDSPLHV 84
             ++ K+N  +        ++  +        +   L+    +   +NA+   GD+ L++
Sbjct: 230 GWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNI 289

Query: 85  AARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQS 138
           AAR G+ ++V AL++            G          + N      +      
Sbjct: 290 AARLGNISIVDALLD-----------YGADPF------IANKSGLRPVDFGAGL 326

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 41.1 bits (96), Expect = 6e-05
 Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 24/88 (27%)

Query: 70  LLLQ-------VNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLG 122
            ++Q         A G++ LH AA Y     +  L           L+         ++G
Sbjct: 211 FIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLL-----------LKGRA------LVG 253

Query: 123 MKNDEEDTALHEAVQSGSLDVVEILLGA 150
             N+  +TAL  A +    +  E+L  A
Sbjct: 254 TVNEAGETALDIARKKHHKECEELLEQA 281

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 40.4 bits (94), Expect = 1e-04
 Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 16/89 (17%)

Query: 66  TCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKN 125
             P       A  +  LH+A +  + A +  L++F   Q G  L+             K 
Sbjct: 178 GQPLPGPDAQAPEELVLHLAVKVANQASL-PLVDFII-QNGGHLD------------AKA 223

Query: 126 DEEDTALHEAVQSGSLDVVEILL--GADP 152
            + +TALH A      D +++LL   A  
Sbjct: 224 ADGNTALHYAALYNQPDCLKLLLKGRALV 252

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 40.0 bits (93), Expect = 1e-04
 Identities = 14/78 (17%), Positives = 22/78 (28%), Gaps = 17/78 (21%)

Query: 73  QVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTAL 132
           +   KG + LH      +A  +  L           L               N+  +T L
Sbjct: 200 KQTGKGSTALHYCCLTDNAECLKLL-----------LRGKASIEIA------NESGETPL 242

Query: 133 HEAVQSGSLDVVEILLGA 150
             A +       E+L  A
Sbjct: 243 DIAKRLKHEHCEELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 39.6 bits (92), Expect = 1e-04
 Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 16/78 (20%)

Query: 77  KGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAV 136
             ++ LH+A R      +  +++F  +  G              L  +  +  TALH   
Sbjct: 168 PDETALHLAVRSVDRTSL-HIVDFLVQNSGN-------------LDKQTGKGSTALHYCC 213

Query: 137 QSGSLDVVEILL--GADP 152
            + + + +++LL   A  
Sbjct: 214 LTDNAECLKLLLRGKASI 231

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.1 bits (90), Expect = 4e-04
 Identities = 28/167 (16%), Positives = 53/167 (31%), Gaps = 54/167 (32%)

Query: 11  KGVIEPFNQ----LAIDRQLG---SLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELV 63
                 FN     L   R       L       +   +   + T   E +S+  K+++  
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSLLLKYLDCR 314

Query: 64  LETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGM 123
            +  P  +L  N     P  +           ++I        + +  G+ +   +    
Sbjct: 315 PQDLPREVLTTN-----PRRL-----------SII-------AESIRDGLATWDNW---- 347

Query: 124 KNDEEDTALHEAVQSGSLDVVEILLGADPA-----------FPYSAN 159
           K+   D  L   ++S SL+V+      +PA           FP SA+
Sbjct: 348 KHVNCD-KLTTIIES-SLNVL------EPAEYRKMFDRLSVFPPSAH 386

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	161
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.96
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.96
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.96
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.96
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.96
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.95
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.95
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.95
2rfa_A	232	Transient receptor potential cation channel subfa	99.95
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.95
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.95
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.95
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.95
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.95
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.94
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.94
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.94
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.94
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.94
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.94
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.94
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.94
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.94
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.94
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.94
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.94
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.94
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.94
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.94
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.94
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.94
2pnn_A	273	Transient receptor potential cation channel subfa	99.94
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.94
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.94
2etb_A	256	Transient receptor potential cation channel subfam	99.94
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.94
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.94
2rfa_A	232	Transient receptor potential cation channel subfa	99.93
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.93
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.93
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.93
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.93
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.93
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.93
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.93
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.93
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.93
2etb_A	256	Transient receptor potential cation channel subfam	99.93
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.93
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.93
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.93
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.93
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.93
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.93
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.92
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.92
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.92
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.92
2pnn_A	273	Transient receptor potential cation channel subfa	99.91
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.91
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.91
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.91
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.91
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.91
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.91
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.9
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.88
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.88
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.88
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.88
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.87
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.87
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.87
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.86
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.86
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.86
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.86
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.84
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.84
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.84
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.84
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.84
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.83
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.83
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.82
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.8
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.76
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.76
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.75
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.74

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=6.5e-32  Score=177.67  Aligned_cols=144  Identities=22%  Similarity=0.276  Sum_probs=121.9

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      .++|+.|++.|+++.|+.|++.+.+++.+|..|.||||+|   +..+       ..+++++|++.|++ ++..+..|+||
T Consensus         5 g~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a---~~~~-------~~~~~~~ll~~gad-~~~~d~~g~Tp   73 (169)
T 4gpm_A            5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHA---AENG-------HKEVVKLLISKGAD-VNAKDSDGRTP   73 (169)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH---HHTT-------CHHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH---HHcC-------CHHHHHHHHhcccc-hhhhccCCCCH
Confidence            4689999999999999999999999999999999999994   4444       48899999999988 57789999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCch----------hhhcCchhHHHHHh------hccCCCCCcHhHHHHHcCCHHHHH
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQ----------ELESGVKSTTRYML------GMKNDEEDTALHEAVQSGSLDVVE  145 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~----------~~~~~~~~~~~~l~------~~~~~~g~t~l~~a~~~~~~~~~~  145 (161)
                      ||+|++.|+.+++++|+++|++++..          +...|+.+++++|+      +.+|..|+||||+|+..|+.++++
T Consensus        74 Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~  153 (169)
T 4gpm_A           74 LHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVK  153 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHH
Confidence            99999999999999999999987655          45667777888886      568889999999999999999999


Q ss_pred             HHHhCCCCCCC
Q 048100          146 ILLGADPAFPY  156 (161)
Q Consensus       146 ~Ll~~~~~~~~  156 (161)
                      +|+++|+++..
T Consensus       154 ~Ll~~GA~ie~  164 (169)
T 4gpm_A          154 LLEKQGGWLEH  164 (169)
T ss_dssp             HHHTC------
T ss_pred             HHHHCCCCcCC
Confidence            99999998864

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.96  E-value=1e-28  Score=156.78  Aligned_cols=122  Identities=23%  Similarity=0.265  Sum_probs=112.2

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      .|+||+|+..|+.+.+++|++.+..++..|..|.||||+|+   ..+       ..+++++|++.+++ ++..+..|.||
T Consensus        15 ~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~---~~~-------~~~~v~~Ll~~g~~-~~~~d~~g~t~   83 (136)
T 2jab_A           15 GKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLAT---AHG-------HLEIVEVLLKNGAD-VNAVDAIGFTP   83 (136)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH---HHT-------CHHHHHHHHHTTCC-TTCCCTTCCCH
T ss_pred             cHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH---HcC-------CHHHHHHHHHcCCC-CCcCCCCCCCH
Confidence            48999999999999999999999999999999999999954   444       48999999999987 57789999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCC
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGAD  151 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  151 (161)
                      ||+|+..++.+++++|+++|++                 ++.+|..|+||||+|+..|+.+++++|+++|
T Consensus        84 L~~A~~~~~~~~v~~Ll~~g~~-----------------~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           84 LHLAAFIGHLEIAEVLLKHGAD-----------------VNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCC-----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC-----------------CcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999999999999999988                 7788999999999999999999999999876

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.96  E-value=2.5e-29  Score=159.67  Aligned_cols=123  Identities=21%  Similarity=0.177  Sum_probs=114.3

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCC-CCc
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAK-GDS   80 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~-~~t   80 (161)
                      .||||.|+..|+.+.+++|++.+..++.++..|.||||+   ++. +       ..+++++|++.+++ ++..+.. |+|
T Consensus        13 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~---A~~-~-------~~~~v~~Ll~~g~~-~~~~~~~~g~t   80 (136)
T 1d9s_A           13 DAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQV---MMM-G-------SAQVAELLLLHGAE-PNCADPATLTR   80 (136)
T ss_dssp             SCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTT---STT-S-------CHHHHHHHHHHTCC-SSCCBTTTTBC
T ss_pred             ccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHH---HHc-C-------CHHHHHHHHHCCCC-CCCcCCCCCCC
Confidence            589999999999999999999999999999999999999   455 5       48999999999988 5777888 999


Q ss_pred             HHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCC
Q 048100           81 PLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPA  153 (161)
Q Consensus        81 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~  153 (161)
                      |||+|+..|+.+++++|+++|++                 ++.+|..|+||||+|+..++.+++++|+++|+|
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~~ga~-----------------~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           81 PVHDAAREGFLDTLVVLHRAGAR-----------------LDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTCCC-----------------CCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCC-----------------CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999999999999999999988                 778899999999999999999999999998875

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=4.7e-28  Score=158.49  Aligned_cols=129  Identities=16%  Similarity=0.129  Sum_probs=106.8

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      .||||.|+..|+++.+++|++.+...+..|..|.||||+|   +..+       +.+++++|++.+++ ++..+..|.||
T Consensus         4 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A---~~~~-------~~~~v~~Ll~~g~~-~~~~~~~g~t~   72 (167)
T 3v31_A            4 SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWA---AAHG-------QIAVVEFLLQNGAD-PQLLGKGRESA   72 (167)
T ss_dssp             CCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHH---HHTT-------CHHHHHHHHHTTCC-TTCCCTTCCCH
T ss_pred             cchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHH---HHCC-------CHHHHHHHHHcCCC-CCCcCCCCCcH
Confidence            5899999999999999999999999999999999999995   4555       48999999999887 57779999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCc
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSA  158 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  158 (161)
                      ||+|+..++.+++++|++.|++                 ++.+|..|.||||+|+..|+.+++++|+++|++++.++
T Consensus        73 L~~A~~~~~~~~v~~Ll~~g~~-----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  132 (167)
T 3v31_A           73 LSLACSKGYTDIVKMLLDCGVD-----------------VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIET  132 (167)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCC-----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHHHcCCHHHHHHHHHCCCC-----------------CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence            9999999999999999999988                 55556666666666666666666666666666655443

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=3e-28  Score=158.54  Aligned_cols=140  Identities=21%  Similarity=0.234  Sum_probs=118.7

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      .++|+.|++.|+.+.+++|++.+..++..+..|.||||+   ++. +       ..+++++|++.+++ ++..+..|+||
T Consensus         6 ~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~---A~~-~-------~~~~v~~Ll~~g~~-~~~~~~~g~t~   73 (162)
T 1ihb_A            6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV---MKL-G-------NPEIARRLLLRGAN-PDLKDRTGFAV   73 (162)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHH---CCS-S-------CHHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred             hhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHH---HHc-C-------cHHHHHHHHHcCCC-CCCCCCCCCCH
Confidence            689999999999999999999999999999999999999   444 5       48999999999887 57779999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCch----------hhhcCchhHHHHHh-------hccCCCCCcHhHHHHHcCCHHHH
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQ----------ELESGVKSTTRYML-------GMKNDEEDTALHEAVQSGSLDVV  144 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~----------~~~~~~~~~~~~l~-------~~~~~~g~t~l~~a~~~~~~~~~  144 (161)
                      ||+|+..|+.+++++|++.|++.+..          +...|+.+++++|+       +.++..|.||||+|+..|+.+++
T Consensus        74 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~  153 (162)
T 1ihb_A           74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVV  153 (162)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHH
Confidence            99999999999999999999876544          35566667777775       35667888888888888888888


Q ss_pred             HHHHhCCCC
Q 048100          145 EILLGADPA  153 (161)
Q Consensus       145 ~~Ll~~~~~  153 (161)
                      ++|+++|+|
T Consensus       154 ~~Ll~~GAd  162 (162)
T 1ihb_A          154 SLMQANGAG  162 (162)
T ss_dssp             HHHHHTC--
T ss_pred             HHHHHhCCC
Confidence            888888875

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.96  E-value=5.2e-29  Score=161.60  Aligned_cols=129  Identities=21%  Similarity=0.131  Sum_probs=112.9

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCc-
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDS-   80 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t-   80 (161)
                      .|+||.|+..|+.+.+++|++.+..++..+..|.||||+|   + .+       ..+++++|++.|++ ++..+..|+| 
T Consensus        13 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A---~-~~-------~~~~v~~Ll~~g~~-~~~~d~~g~tt   80 (156)
T 1bi7_B           13 ADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM---M-MG-------SARVAELLLLHGAE-PNCADPATLTR   80 (156)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSS---C-TT-------CHHHHHHHHTTTCC-CCCCCTTTCCC
T ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH---H-cC-------CHHHHHHHHHcCCC-CCCcCCCCCcH
Confidence            5899999999999999999999999999999999999994   3 44       48999999999987 5778999999 


Q ss_pred             HHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCcC
Q 048100           81 PLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus        81 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                      |||+|+..|+.+++++|+++|++                 ++.+|..|+||||+|+..|+.+++++|+++|++++.++.
T Consensus        81 pL~~A~~~~~~~~v~~Ll~~ga~-----------------~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~  142 (156)
T 1bi7_B           81 PVHDAAREGFLDTLVVLHRAGAR-----------------LDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNH  142 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTCC-----------------SSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC--------
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCC-----------------CcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCc
Confidence            99999999999999999999998                 778899999999999999999999999999999876653

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.96  E-value=2.7e-28  Score=171.32  Aligned_cols=130  Identities=24%  Similarity=0.259  Sum_probs=103.2

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      .||||+|+..|+.+.++.|++.+..++..+..|.||+|+|+   ..+       ..+++++|++.|++ ++..|..|+||
T Consensus        87 ~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~---~~~-------~~~~~~~Ll~~g~~-~n~~d~~g~Tp  155 (269)
T 4b93_B           87 SSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLAC---QQG-------HFQVVKCLLDSNAK-PNKKDLSGNTP  155 (269)
T ss_dssp             CCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHH---HHT-------CHHHHHHHHHTTCC-SCCCCTTCCCH
T ss_pred             CCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCcccccc---ccC-------hHHHHHHHHHCCCC-CCCCCCCCCCH
Confidence            36777777777777777777777777777777777777743   333       36777777777776 46667777788


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCcC
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                      ||+|++.|+.+++++|++.|++                 ++.++..|+||||+|+..|+.+++++|+++|+|++.++.
T Consensus       156 L~~A~~~g~~~~v~~Ll~~gad-----------------vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~  216 (269)
T 4b93_B          156 LIYACSGGHHELVALLLQHGAS-----------------INASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNK  216 (269)
T ss_dssp             HHHHHHTTCGGGHHHHHHTTCC-----------------TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCT
T ss_pred             HHHHHHCCCHHHHHHHHHCCCC-----------------CCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence            8888888888888888877777                 677899999999999999999999999999999987654

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.96  E-value=6.1e-28  Score=150.61  Aligned_cols=124  Identities=30%  Similarity=0.374  Sum_probs=114.6

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      .|+||.|++.|+.+.+++|++.+..++..+..|.||||+|+   ..+       ..+++++|++.+.+ ++..+..|.||
T Consensus         3 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~---~~~-------~~~~~~~Ll~~g~~-~~~~~~~g~t~   71 (126)
T 1n0r_A            3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA---RNG-------HLEVVKLLLEAGAD-VNAKDKNGRTP   71 (126)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHH---HHT-------CHHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred             ccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHH---HcC-------cHHHHHHHHHcCCC-CcccCCCCCcH
Confidence            58999999999999999999999999999999999999955   444       48999999999987 57778999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCC
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPA  153 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~  153 (161)
                      ||+|+..++.+++++|++.|.+                 ++.+|..|.|||++|+..++.+++++|+++|+|
T Consensus        72 l~~A~~~~~~~~~~~Ll~~g~~-----------------~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           72 LHLAARNGHLEVVKLLLEAGAD-----------------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC-----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHHHcChHHHHHHHHHcCCC-----------------CcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            9999999999999999999988                 778899999999999999999999999999986

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=9.4e-28  Score=157.51  Aligned_cols=128  Identities=25%  Similarity=0.335  Sum_probs=107.0

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      .++|++|++.|+.+.+++|++.+..++..|..|.||||+|   +..+       ..+++++|++.+++ ++..+..|.||
T Consensus        15 ~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A---~~~~-------~~~~v~~Ll~~g~~-~~~~~~~g~t~   83 (169)
T 2y1l_E           15 GKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLA---AFNG-------HLEIVEVLLKNGAD-VNAVDHAGMTP   83 (169)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH---HHTT-------CHHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred             cchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH---HHcC-------CHHHHHHHHHcCCC-CCccCCCCCCH
Confidence            3789999999999999999999999999999999999995   4455       48999999999987 57779999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCC
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYS  157 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~  157 (161)
                      ||+|+..|+.+++++|++.|++                 ++.+|..|.||||+|+..|+.+++++|++.|++++.+
T Consensus        84 L~~A~~~~~~~~~~~Ll~~g~~-----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~  142 (169)
T 2y1l_E           84 LRLAALFGHLEIVEVLLKNGAD-----------------VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQ  142 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC-----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC-----------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence            9999999999999999999988                 5555666666666666666666666666666666544

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.96  E-value=1.6e-27  Score=163.23  Aligned_cols=147  Identities=19%  Similarity=0.178  Sum_probs=112.1

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      .||||.|+..|+.+.+++|++.+..++..+..|.||||+|+   ..+       ..+++++|++++++ ++..+..|.||
T Consensus        41 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~---~~~-------~~~~v~~Ll~~g~~-~~~~~~~g~t~  109 (231)
T 3aji_A           41 RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA---SAG-------XDEIVKALLVKGAH-VNAVNQNGCTP  109 (231)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH---HHT-------CHHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred             CCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHH---HcC-------HHHHHHHHHHcCCC-CCCCCCCCCCH
Confidence            46778888888888888887777777777777888888844   333       37788888888776 45667788888


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCch----------hhhcCchhHHHHHh------hccCCCCCcHhHHHHHcCCHHHHH
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQ----------ELESGVKSTTRYML------GMKNDEEDTALHEAVQSGSLDVVE  145 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~----------~~~~~~~~~~~~l~------~~~~~~g~t~l~~a~~~~~~~~~~  145 (161)
                      ||+|+..++.+++++|++.|.+....          +...|..+++++|+      +.+|..|+||||+|+..|+.++++
T Consensus       110 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~  189 (231)
T 3aji_A          110 LHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAK  189 (231)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHH
Confidence            88888888888888888887765443          34566667777776      456788899999999999999999


Q ss_pred             HHHhCCCCCCCCcC
Q 048100          146 ILLGADPAFPYSAN  159 (161)
Q Consensus       146 ~Ll~~~~~~~~~~~  159 (161)
                      +|++.|++++.++.
T Consensus       190 ~Ll~~ga~~~~~~~  203 (231)
T 3aji_A          190 FLVTQGASIYIENK  203 (231)
T ss_dssp             HHHHTTCCSCCCCT
T ss_pred             HHHHCCCCCCCCCC
Confidence            99988888876543

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.96  E-value=9.2e-28  Score=166.90  Aligned_cols=148  Identities=18%  Similarity=0.193  Sum_probs=129.0

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      .||||.|+..|+.+.++.|++.+..++..+..|.||||+|+   ..+       ..+++++|++.++..++..+..|.||
T Consensus        58 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~---~~~-------~~~~v~~Ll~~~~~~~~~~~~~g~t~  127 (253)
T 1yyh_A           58 ETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV---SAD-------AQGVFQILIRNRATDLDARMHDGTTP  127 (253)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH---HHT-------CHHHHHHHHHSTTSCTTCCCTTCCCH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH---HcC-------CHHHHHHHHHcCCCCccccCCCCCcH
Confidence            48999999999999999999999999999999999999955   444       48899999998875567888999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCch----------hhhcCchhHHHHHh------hccCCCCCcHhHHHHHcCCHHHHH
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQ----------ELESGVKSTTRYML------GMKNDEEDTALHEAVQSGSLDVVE  145 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~----------~~~~~~~~~~~~l~------~~~~~~g~t~l~~a~~~~~~~~~~  145 (161)
                      ||+|+..++.+++++|++.|++.+..          +...|+.+++++|+      +.+|..|.||||+|+..|+.++++
T Consensus       128 L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~  207 (253)
T 1yyh_A          128 LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAK  207 (253)
T ss_dssp             HHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHH
Confidence            99999999999999999999886655          45666777888886      467889999999999999999999


Q ss_pred             HHHhCCCCCCCCcC
Q 048100          146 ILLGADPAFPYSAN  159 (161)
Q Consensus       146 ~Ll~~~~~~~~~~~  159 (161)
                      +|+++|++++.++.
T Consensus       208 ~Ll~~ga~~~~~d~  221 (253)
T 1yyh_A          208 VLLDHFANRDITDH  221 (253)
T ss_dssp             HHHHTTCCTTCCCT
T ss_pred             HHHHcCCCcccccc
Confidence            99999999886654

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=1e-27  Score=160.18  Aligned_cols=129  Identities=17%  Similarity=0.154  Sum_probs=109.9

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      .||||.|+..|+.+.+++|++.+..++..+..|.||||+|   +..+       ..+++++|++.+++ ++..+..|.||
T Consensus        36 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A---~~~~-------~~~~v~~Ll~~g~~-~~~~~~~g~t~  104 (192)
T 2rfm_A           36 RTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWA---VKNN-------RLGIAEKLLSKGSN-VNTKDFSGKTP  104 (192)
T ss_dssp             CCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHH---HHTT-------CHHHHHHHHHHTCC-TTCCCTTSCCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHH---HHcC-------CHHHHHHHHHCCCC-CCCCCCCCCcH
Confidence            5899999999999999999999999999999999999995   4444       48999999999987 57779999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCc
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSA  158 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  158 (161)
                      ||+|+..++.+++++|++.|++                 ++.+|..|.||||+|+..|+.+++++|+++|++++.++
T Consensus       105 L~~A~~~~~~~~v~~Ll~~g~~-----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~  164 (192)
T 2rfm_A          105 LMWSIIFGYSEMSYFLLEHGAN-----------------VNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARD  164 (192)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCC-----------------SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBC
T ss_pred             HHHHHHcCCHHHHHHHHHCCCC-----------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence            9999999999999999999988                 55567777777777777777777777777777766543

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=1.9e-27  Score=153.69  Aligned_cols=129  Identities=25%  Similarity=0.235  Sum_probs=115.2

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      .++|+.|++.|+.+.+++|++.+...+ .+..|.||||+|+   ..|       ..+++++|++.+.+ ++..+..|+||
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~---~~~-------~~~~v~~Ll~~g~~-~~~~~~~g~t~   70 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAA---QYG-------HFSTTEVLLRAGVS-RDARTKVDRTP   70 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHH---HHT-------CHHHHHHHHTTTCC-TTCCCTTCCCH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHH---HcC-------CHHHHHHHHHcCCC-CCCCCCCCCCH
Confidence            589999999999999999999887665 6888999999954   444       48999999999987 57779999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCcC
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                      ||+|+..|+.+++++|+++|++                 ++.+|..|+||||+|+..|+.+++++|+++|++++.++.
T Consensus        71 L~~A~~~~~~~~v~~Ll~~g~~-----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  131 (153)
T 1awc_B           71 LHMAASEGHANIVEVLLKHGAD-----------------VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSK  131 (153)
T ss_dssp             HHHHHHHTCHHHHHHHHTTTCC-----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHHcChHHHHHHHHHcCCC-----------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC
Confidence            9999999999999999999988                 777899999999999999999999999999999876653

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.95  E-value=5.2e-27  Score=159.87  Aligned_cols=148  Identities=18%  Similarity=0.193  Sum_probs=124.6

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      .||||.|+..|+.+.+++|++.+..++..+..|.||||+|+   ..+       ..+++++|++.++..++..+..|.||
T Consensus        26 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~---~~~-------~~~~v~~Ll~~~~~~~~~~~~~g~t~   95 (223)
T 2f8y_A           26 ETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV---SAD-------AQGVFQILIRNRATDLDARMHDGTTP   95 (223)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH---HTT-------CHHHHHHHHHBTTSCTTCCCTTCCCH
T ss_pred             CchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH---HcC-------CHHHHHHHHHcCCCCcccCCCCCCcH
Confidence            47999999999999999999999999999999999999954   444       48899999998875567778899999


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCch----------hhhcCchhHHHHHh------hccCCCCCcHhHHHHHcCCHHHHH
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQ----------ELESGVKSTTRYML------GMKNDEEDTALHEAVQSGSLDVVE  145 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~----------~~~~~~~~~~~~l~------~~~~~~g~t~l~~a~~~~~~~~~~  145 (161)
                      ||+|+..++.+++++|++.|++....          +...|+.+++++|+      +.+|..|.||||+|+..|+.++++
T Consensus        96 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~  175 (223)
T 2f8y_A           96 LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAK  175 (223)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHH
Confidence            99999999999999999988876544          35666777888886      467788999999999999999999


Q ss_pred             HHHhCCCCCCCCcC
Q 048100          146 ILLGADPAFPYSAN  159 (161)
Q Consensus       146 ~Ll~~~~~~~~~~~  159 (161)
                      +|+++|++++.++.
T Consensus       176 ~Ll~~ga~~~~~~~  189 (223)
T 2f8y_A          176 VLLDHFANRDITDH  189 (223)
T ss_dssp             HHHHTTCCTTCCCT
T ss_pred             HHHHcCCCCccccc
Confidence            99999888876543

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=2e-27  Score=155.23  Aligned_cols=130  Identities=23%  Similarity=0.306  Sum_probs=115.0

Q ss_pred             ChHHHHHHHcCChHHHHHHHh-hhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCc
Q 048100            2 NSDLYEAAAKGVIEPFNQLAI-DRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDS   80 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~-~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t   80 (161)
                      +++|+.|++.|+++.++.|++ .+...+..+..|.||||+|   +..+       +.+++++|++.+++ ++..+..|+|
T Consensus         9 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A---~~~~-------~~~~v~~Ll~~g~~-~~~~~~~g~t   77 (165)
T 3twr_A            9 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFA---AGYN-------RVSVVEYLLQHGAD-VHAKDKGGLV   77 (165)
T ss_dssp             HHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHH---HHTT-------CHHHHHHHHHTTCC-TTCCCTTSCC
T ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHH---HHcC-------hHHHHHHHHhcCCC-CCccCCCCCC
Confidence            479999999999999999987 4456677888899999994   4555       48999999999987 5778999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCcC
Q 048100           81 PLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus        81 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                      |||+|+..++.+++++|++.|++                 ++.+|..|+||||+|+..|+.+++++|+++|++++.++.
T Consensus        78 ~L~~A~~~~~~~~v~~Ll~~g~~-----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  139 (165)
T 3twr_A           78 PLHNACSYGHYEVAELLVKHGAV-----------------VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNR  139 (165)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCC-----------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHHHcCcHHHHHHHHhCCCC-----------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCC
Confidence            99999999999999999999998                 777899999999999999999999999999999876654

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.95  E-value=2.2e-27  Score=155.99  Aligned_cols=141  Identities=16%  Similarity=0.096  Sum_probs=103.7

Q ss_pred             hHHHHHHHcCChHHHHHHHhhhCc-cccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            3 SDLYEAAAKGVIEPFNQLAIDRQL-GSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      +|||.|+..|+++.++.|++.+.. .+..+..|.||||+|   +..+       ..+++++|++.|++ ++..+..|.||
T Consensus         4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A---~~~~-------~~~~v~~Ll~~g~~-~~~~~~~g~t~   72 (172)
T 3v30_A            4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWA---SAFG-------EIETVRFLLEWGAD-PHILAKERESA   72 (172)
T ss_dssp             CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHH---HHTT-------CHHHHHHHHHHTCC-TTCCCTTCCCH
T ss_pred             hhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHH---HHcC-------CHHHHHHHHHcCCC-chhhcccCCCH
Confidence            689999999999999999987765 677888999999994   4455       48899999999887 56778899999


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCch----------hhhcCchhHHHHHh------hccCCCCCcHhHHHHHcCCHHHHH
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQ----------ELESGVKSTTRYML------GMKNDEEDTALHEAVQSGSLDVVE  145 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~----------~~~~~~~~~~~~l~------~~~~~~g~t~l~~a~~~~~~~~~~  145 (161)
                      ||+|+..++.+++++|+++|++....          +...|+.+++++|+      +.+|..|.||||+|+..|+.++++
T Consensus        73 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~  152 (172)
T 3v30_A           73 LSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQ  152 (172)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHH
Confidence            99999999999999999998884332          23344444455543      345555666666666666666666


Q ss_pred             HHHhCCCCC
Q 048100          146 ILLGADPAF  154 (161)
Q Consensus       146 ~Ll~~~~~~  154 (161)
                      +|+++++++
T Consensus       153 ~L~~~~~~~  161 (172)
T 3v30_A          153 VIENHILKL  161 (172)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666555443

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.95  E-value=2.2e-27  Score=166.62  Aligned_cols=148  Identities=20%  Similarity=0.173  Sum_probs=114.5

Q ss_pred             hHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCcc-------------
Q 048100            3 SDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPS-------------   69 (161)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~-------------   69 (161)
                      ||||.|+..|+.+.++.|++.+..++..+..|.||||+   |+..+       ..+++++|++.++.             
T Consensus        47 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~---A~~~~-------~~~~v~~Ll~~~~~~~~~~~~~~~~~~  116 (282)
T 1oy3_D           47 TALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHL---ACRVR-------AHTCACVLLQPRPSHPRDASDTYLTQS  116 (282)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHH---HTTTT-------CHHHHHHHSSSCCSSCCCC--------
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH---HHHcC-------CcchhHhhhccCCCCchhhHHHHhhcc
Confidence            66677777777777776666666666666667777777   33333       47888888886643             


Q ss_pred             ---------------------------------chhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCch---------
Q 048100           70 ---------------------------------LLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQ---------  107 (161)
Q Consensus        70 ---------------------------------~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~---------  107 (161)
                                                       .++..+..|.||||+|+..|+.+++++|+++|++....         
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL  196 (282)
T 1oy3_D          117 QDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPL  196 (282)
T ss_dssp             ---------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHH
T ss_pred             cccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHH
Confidence                                             13456788999999999999999999999999887654         


Q ss_pred             --hhhcCchhHHHHHh------hccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCcCC
Q 048100          108 --ELESGVKSTTRYML------GMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSANG  160 (161)
Q Consensus       108 --~~~~~~~~~~~~l~------~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~  160 (161)
                        +...|+.+++++|+      +.+|..|+||||+|+..|+.+++++|+++|++++.+++.
T Consensus       197 ~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~  257 (282)
T 1oy3_D          197 HLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGD  257 (282)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC--
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCc
Confidence              34566667888886      578899999999999999999999999999999876653

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=4e-27  Score=155.81  Aligned_cols=127  Identities=20%  Similarity=0.245  Sum_probs=97.3

Q ss_pred             ChHHHHHHHcCChHHHHHHHhh-hCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCc
Q 048100            2 NSDLYEAAAKGVIEPFNQLAID-RQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDS   80 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t   80 (161)
                      -++|+.|+..|+++.++.|++. +...+..+..|.||||+|   +..+       ..+++++|++.|++ ++..+..|.|
T Consensus         6 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A---~~~~-------~~~~v~~Ll~~g~~-~~~~~~~g~t   74 (179)
T 3f6q_A            6 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWA---CREG-------RSAVVEMLIMRGAR-INVMNRGDDT   74 (179)
T ss_dssp             -CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHH---HHTT-------CHHHHHHHHHTTCC-TTCCCTTCCC
T ss_pred             HHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHH---HHcC-------cHHHHHHHHHcCCC-CCCcCCCCCC
Confidence            3689999999999999999877 566788899999999994   4454       48899999999887 5777889999


Q ss_pred             HHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCC
Q 048100           81 PLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPY  156 (161)
Q Consensus        81 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~  156 (161)
                      |||+|+..|+.+++++|++.|++                 ++.+|..|.||||+|+..|+.+++++|+++|++++.
T Consensus        75 ~L~~A~~~~~~~~v~~Ll~~g~~-----------------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  133 (179)
T 3f6q_A           75 PLHLAASHGHRDIVQKLLQYKAD-----------------INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI  133 (179)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCC-----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSB
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCC-----------------CCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcch
Confidence            99999999999999999999988                 444455555555555555555555555555555443

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.95  E-value=9.4e-27  Score=164.94  Aligned_cols=147  Identities=18%  Similarity=0.192  Sum_probs=119.7

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      +|+|+.|+..|+++.|+.|++.+..++..+..|.||||+|   +..|       +.+++++|++.|++ ++..+..|+||
T Consensus        41 ~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A---~~~g-------~~~~v~~Ll~~ga~-~~~~~~~g~tp  109 (299)
T 1s70_B           41 GAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQA---CIDD-------NVDMVKFLVENGAN-INQPDNEGWIP  109 (299)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHH---HHTT-------CHHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred             ccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH---HHcC-------CHHHHHHHHHCCCC-CCCCCCCCCcH
Confidence            3789999999999999999999999999999999999995   4555       48999999999987 57779999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCch------------------------------------------------------
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQ------------------------------------------------------  107 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~------------------------------------------------------  107 (161)
                      ||+|+..|+.+++++|+++|++....                                                      
T Consensus       110 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  189 (299)
T 1s70_B          110 LHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGH  189 (299)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccC
Confidence            99999999999999999998876433                                                      


Q ss_pred             ----------------hhhcCchhHHHHHh------hccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCcC
Q 048100          108 ----------------ELESGVKSTTRYML------GMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       108 ----------------~~~~~~~~~~~~l~------~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                                      +...|+.+++++|+      +.+|..|+||||+|+..|+.+++++|+++|++++.++.
T Consensus       190 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~  263 (299)
T 1s70_B          190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNK  263 (299)
T ss_dssp             CCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             cchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCC
Confidence                            11233344566665      45677788888888888888888888888887765543

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.95  E-value=6.1e-27  Score=164.37  Aligned_cols=147  Identities=18%  Similarity=0.137  Sum_probs=122.3

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCc---cccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCC
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQL---GSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKG   78 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~---~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~   78 (161)
                      .||||.|++.|+.+.|++|++.+..   .+..+..|.||||+|+   ..|       +.+++++|+++|++ ++..+..|
T Consensus        10 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~---~~g-------~~~~v~~Ll~~ga~-~~~~~~~g   78 (282)
T 1oy3_D           10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAA---ILG-------EASTVEKLYAAGAG-VLVAERGG   78 (282)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHH---HHT-------CHHHHHHHHHTTCC-SSCCCTTS
T ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHH---HcC-------CHHHHHHHHHcCCC-CCCCCCCC
Confidence            5899999999999999999988876   7788999999999954   444       48999999999988 57779999


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHhhhcCC-----------------------------------------------ch----
Q 048100           79 DSPLHVAARYGHAAVVGALIEFAEKQP-----------------------------------------------GQ----  107 (161)
Q Consensus        79 ~t~l~~a~~~~~~~~~~~Ll~~g~~~~-----------------------------------------------~~----  107 (161)
                      .||||+|+..|+.+++++|++.|....                                               ..    
T Consensus        79 ~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  158 (282)
T 1oy3_D           79 HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDG  158 (282)
T ss_dssp             CCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTS
T ss_pred             CCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCC
Confidence            999999999999999999999875421                                               11    


Q ss_pred             ------hhhcCchhHHHHHhh------ccC-CCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCcC
Q 048100          108 ------ELESGVKSTTRYMLG------MKN-DEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       108 ------~~~~~~~~~~~~l~~------~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                            +...|+.+++++|++      ..+ ..|+||||+|+..|+.+++++|+++|++++.++.
T Consensus       159 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~  223 (282)
T 1oy3_D          159 HTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMY  223 (282)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             cCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccc
Confidence                  345566678888863      344 3499999999999999999999999998887654

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.95  E-value=1.2e-26  Score=158.94  Aligned_cols=144  Identities=17%  Similarity=0.192  Sum_probs=116.5

Q ss_pred             ChHHHHHHHcCChHHHHHHHhh-hCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccch----hccCC
Q 048100            2 NSDLYEAAAKGVIEPFNQLAID-RQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLL----LQVNA   76 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~----~~~~~   76 (161)
                      +||||.|++.|+.+.++.|++. +..++.+|..|.||||+|   +..|       +.+++++|++.+++..    ...+.
T Consensus         4 ~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A---~~~g-------~~~~v~~Ll~~~~~~~~~~~~~~~~   73 (232)
T 2rfa_A            4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIA---ALYD-------NLEAAMVLMEAAPELVFEPMTSELY   73 (232)
T ss_dssp             TCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHH---HHTT-------CHHHHHHHHHHCGGGGGCCCCSTTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHH---HHcC-------CHHHHHHHHHcCchhccccccccCC
Confidence            6899999999999999999987 889999999999999994   4555       4899999999998743    34577


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHhhhcCCch-----------------------hhhcCchhHHHHHh------hccCCC
Q 048100           77 KGDSPLHVAARYGHAAVVGALIEFAEKQPGQ-----------------------ELESGVKSTTRYML------GMKNDE  127 (161)
Q Consensus        77 ~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-----------------------~~~~~~~~~~~~l~------~~~~~~  127 (161)
                      .|.||||+|+..|+.+++++|++.|++....                       +...|+.+++++|+      +.+|..
T Consensus        74 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~  153 (232)
T 2rfa_A           74 EGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSL  153 (232)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Confidence            8999999999999999999999999886543                       23445555666665      346777


Q ss_pred             CCcHhHHHHHcCCHHHH----HHHHhCCCCCC
Q 048100          128 EDTALHEAVQSGSLDVV----EILLGADPAFP  155 (161)
Q Consensus       128 g~t~l~~a~~~~~~~~~----~~Ll~~~~~~~  155 (161)
                      |+||||+|+..++.+++    ++|+++|++..
T Consensus       154 g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~  185 (232)
T 2rfa_A          154 GNTVLHILILQPNKTFACQMYNLLLSYDGGDH  185 (232)
T ss_dssp             SCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCS
T ss_pred             CCCHHHHHHHcCChHHHHHHHHHHHhcCCchh
Confidence            77777777777777776    77777777654

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.95  E-value=1.9e-26  Score=163.05  Aligned_cols=143  Identities=19%  Similarity=0.153  Sum_probs=101.2

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      .||||.|+..|+.+.+++|++.+..++.+|..|.||||+|   +..|       ..+++++|++.+++ ++..+..|.||
T Consensus        60 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A---~~~g-------~~~~v~~Ll~~ga~-~~~~~~~g~t~  128 (285)
T 3d9h_A           60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEA---CLGG-------HLSCVKILLKHGAQ-VNGVTADWHTP  128 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHH---HHTT-------CHHHHHHHHHTTCC-SSCCCTTCCCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH---HHCC-------cHHHHHHHHHCCCC-CCCCCCCCCCH
Confidence            4788888888888888888888888888888888888884   4444       37788888887766 46667778888


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCch---------hhhcCchhHHHHHh------hccCCCCCcHhHHHHHcCCHHHHHH
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQ---------ELESGVKSTTRYML------GMKNDEEDTALHEAVQSGSLDVVEI  146 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~---------~~~~~~~~~~~~l~------~~~~~~g~t~l~~a~~~~~~~~~~~  146 (161)
                      ||+|+..|+.+++++|++.|++....         +...|+.+++++|+      +.+|..|+||||+|+..|+.+++++
T Consensus       129 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~  208 (285)
T 3d9h_A          129 LFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKK  208 (285)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence            88888888888888888877665432         34455555666664      3455566666666666666666666


Q ss_pred             HHhCCCCCC
Q 048100          147 LLGADPAFP  155 (161)
Q Consensus       147 Ll~~~~~~~  155 (161)
                      |++.|++++
T Consensus       209 Ll~~ga~~~  217 (285)
T 3d9h_A          209 LLESGADVN  217 (285)
T ss_dssp             HHHTTCCTT
T ss_pred             HHHCCCCCC
Confidence            666666654

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.95  E-value=2.4e-27  Score=155.83  Aligned_cols=119  Identities=22%  Similarity=0.175  Sum_probs=96.9

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      .||||.|+..|+.+.+++|++.+..++..+..|.||||+|   +..+       ..+++++|++.+++ ++..+..|.||
T Consensus        37 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A---~~~~-------~~~~v~~Ll~~g~~-~~~~~~~g~t~  105 (172)
T 3v30_A           37 FTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLA---STGG-------YTDIVGLLLERDVD-INIYDWNGGTP  105 (172)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHH---HHTT-------CHHHHHHHHTTTCC-TTCCCTTSCCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHH---HHCC-------CHHHHHHHHHcCCC-CCCCCCCCCCH
Confidence            4899999999999999999999999999999999999994   4555       48999999999988 57789999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCch----------hhhcCchhHHHHHhh------ccCCCCCcH
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQ----------ELESGVKSTTRYMLG------MKNDEEDTA  131 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~----------~~~~~~~~~~~~l~~------~~~~~g~t~  131 (161)
                      ||+|+..++.+++++|++.|++....          +...|+.+++++|++      .++..|.||
T Consensus       106 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          106 LLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP  171 (172)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence            99999999999999999999887655          355666677877763      455555555

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.95  E-value=2.5e-26  Score=157.79  Aligned_cols=146  Identities=21%  Similarity=0.208  Sum_probs=91.3

Q ss_pred             hHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHH
Q 048100            3 SDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPL   82 (161)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (161)
                      ||||.|+..|+.+.+++|++.+...+..+..|.||||+|   +..+       ..+++++|++.++..++..+..|.|||
T Consensus        46 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A---~~~~-------~~~~~~~Ll~~~~~~~~~~~~~g~t~L  115 (237)
T 3b7b_A           46 TPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLA---AKKG-------HYEVVQYLLSNGQMDVNCQDDGGWTPM  115 (237)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHH---HHTT-------CHHHHHHHHTTTCCCTTCCCTTSCCHH
T ss_pred             CHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHH---HHcC-------CHHHHHHHHhCCCCCcccCCCCCCCHH
Confidence            445555555555555555544444444455555555552   2222       366677777766433555666677777


Q ss_pred             HHHHHhCCHHHHHHHHHhhhcCCch----------hhhcCchhHHHHHh------hccCCCCCcHhHHHHHcCCHHHHHH
Q 048100           83 HVAARYGHAAVVGALIEFAEKQPGQ----------ELESGVKSTTRYML------GMKNDEEDTALHEAVQSGSLDVVEI  146 (161)
Q Consensus        83 ~~a~~~~~~~~~~~Ll~~g~~~~~~----------~~~~~~~~~~~~l~------~~~~~~g~t~l~~a~~~~~~~~~~~  146 (161)
                      |+|+..++.+++++|++.|++....          +...|..+++++|+      +.+|..|.||||+|+..++.+++++
T Consensus       116 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~  195 (237)
T 3b7b_A          116 IWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVL  195 (237)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHH
Confidence            7777777777777777776665433          34555666677775      3566778888888888888888888


Q ss_pred             HHhCCCCCCCCc
Q 048100          147 LLGADPAFPYSA  158 (161)
Q Consensus       147 Ll~~~~~~~~~~  158 (161)
                      |+++|++++.++
T Consensus       196 Ll~~gad~~~~d  207 (237)
T 3b7b_A          196 FLSRDSDVTLKN  207 (237)
T ss_dssp             HHTTTCCTTCCC
T ss_pred             HHHcCCCCCccC
Confidence            888888776654

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=4.9e-27  Score=155.35  Aligned_cols=130  Identities=17%  Similarity=0.144  Sum_probs=119.9

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      .||||.|+..|+.+.++.|++.+..++..+..|.||||+|   +..+       ..+++++|++.|++ ++..+..|.||
T Consensus        40 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A---~~~~-------~~~~v~~Ll~~g~~-~~~~d~~g~t~  108 (179)
T 3f6q_A           40 FSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLA---ASHG-------HRDIVQKLLQYKAD-INAVNEHGNVP  108 (179)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH---HHTT-------CHHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred             CCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHH---HHcC-------CHHHHHHHHHcCCC-CCccCCCCCCH
Confidence            4899999999999999999999999999999999999995   4555       48999999999987 57789999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCcC
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                      ||+|+..++.+++++|+++|++                 ++.+|..|.||+++|+..++.+++++|++.|++++....
T Consensus       109 L~~A~~~~~~~~v~~Ll~~ga~-----------------~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~~~~  169 (179)
T 3f6q_A          109 LHYACFWGQDQVAEDLVANGAL-----------------VSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPY  169 (179)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC-----------------SSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCSCBCC
T ss_pred             HHHHHHcCCHHHHHHHHHCCCC-----------------cchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCcccCCc
Confidence            9999999999999999999998                 778899999999999999999999999999999986543

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.95  E-value=1.7e-26  Score=151.49  Aligned_cols=122  Identities=24%  Similarity=0.314  Sum_probs=112.4

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      .|+||.|+..|+.+.+++|++.+...+..+..|.||||+|   +..+       ..+++++|++.+++ ++..+..|.||
T Consensus        48 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A---~~~~-------~~~~~~~Ll~~g~~-~~~~~~~g~t~  116 (169)
T 2y1l_E           48 WTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLA---ALFG-------HLEIVEVLLKNGAD-VNANDMEGHTP  116 (169)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH---HHTT-------CHHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHH---HHcC-------CHHHHHHHHHcCCC-CCCCCCCCCCH
Confidence            5899999999999999999999999999999999999995   4455       48999999999987 57779999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCC
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGAD  151 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  151 (161)
                      ||+|+..++.+++++|+++|++                 ++.+|..|.||+++|+..|+.+++++|+++|
T Consensus       117 L~~A~~~~~~~~v~~Ll~~g~~-----------------~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          117 LHLAAMFGHLEIVEVLLKNGAD-----------------VNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC-----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC-----------------CCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            9999999999999999999998                 7788999999999999999999999999876

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=1.5e-26  Score=149.46  Aligned_cols=118  Identities=22%  Similarity=0.227  Sum_probs=109.5

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      .||||.|+..|+.+.+++|++.+..++..+..|.||||+|+   ..+       ..+++++|++.|++ ++..+..|.||
T Consensus        35 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~---~~~-------~~~~v~~Ll~~g~~-~~~~~~~g~t~  103 (153)
T 1awc_B           35 TSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAA---SEG-------HANIVEVLLKHGAD-VNAKDMLKMTA  103 (153)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHH---HHT-------CHHHHHHHHTTTCC-TTCCCTTSCCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH---HcC-------hHHHHHHHHHcCCC-CCCCCCCCCCH
Confidence            58999999999999999999999999999999999999955   444       48999999999988 57789999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHH
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEIL  147 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~L  147 (161)
                      ||+|+..++.+++++|+++|++                 ++.+|..|.||+++|+..|+.+++++|
T Consensus       104 L~~A~~~~~~~~v~~Ll~~ga~-----------------~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          104 LHWATEHNHQEVVELLIKYGAD-----------------VHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC-----------------TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC-----------------ccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            9999999999999999999998                 778899999999999999999999987

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.95  E-value=5.4e-26  Score=156.30  Aligned_cols=146  Identities=18%  Similarity=0.164  Sum_probs=77.1

Q ss_pred             hHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCcc---chhccCCCCC
Q 048100            3 SDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPS---LLLQVNAKGD   79 (161)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~---~~~~~~~~~~   79 (161)
                      ||||.|+..|+.+.+++|++.+..++..+..|.||||+|   +..+       ..+++++|++.++.   .++..+..|.
T Consensus        48 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A---~~~~-------~~~~~~~Ll~~~~~~~~~~~~~~~~g~  117 (241)
T 1k1a_A           48 TPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA---CEHR-------SPTCLRALLDSAAPGTLDLEARNYDGL  117 (241)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH---HHTT-------CHHHHHHHHHHSCTTSCCTTCCCTTSC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHH---HHcC-------CHHHHHHHHHcCCCccccccccCcCCC
Confidence            344444444444444444444444444444444444442   2222       24555555555441   1334455555


Q ss_pred             cHHHHHHHhCCHHHHHHHHHhhhcCCch-----------hhhcCchhHHHHHh------hccCCCCCcHhHHHHHcCCHH
Q 048100           80 SPLHVAARYGHAAVVGALIEFAEKQPGQ-----------ELESGVKSTTRYML------GMKNDEEDTALHEAVQSGSLD  142 (161)
Q Consensus        80 t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-----------~~~~~~~~~~~~l~------~~~~~~g~t~l~~a~~~~~~~  142 (161)
                      ||||+|+..++.+++++|++.|.+....           +...|+.+++++|+      +.+|..|+||||+|+..|+.+
T Consensus       118 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  197 (241)
T 1k1a_A          118 TALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLP  197 (241)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHH
T ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHH
Confidence            5666666556666666666555554322           23444445566654      345666777777777777777


Q ss_pred             HHHHHHhCCCCCCCCc
Q 048100          143 VVEILLGADPAFPYSA  158 (161)
Q Consensus       143 ~~~~Ll~~~~~~~~~~  158 (161)
                      ++++|+++|++++.++
T Consensus       198 ~v~~Ll~~ga~~~~~~  213 (241)
T 1k1a_A          198 LVRTLVRSGADSSLKN  213 (241)
T ss_dssp             HHHHHHHTTCCTTCCC
T ss_pred             HHHHHHhcCCCCCCcC
Confidence            7777777777666544

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.95  E-value=5.7e-27  Score=168.66  Aligned_cols=150  Identities=17%  Similarity=0.138  Sum_probs=117.9

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      .||||+|+..|+.+.|+.|++.+..++.+|..|.||||+|+   ..|+..    ..++++.|++.+...++..+..|+||
T Consensus       132 ~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~---~~g~~~----~~~~~~~ll~~~~~~~~~~d~~g~tp  204 (327)
T 1sw6_A          132 NTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAV---KSVNNY----DSGTFEALLDYLYPCLILEDSMNRTI  204 (327)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHH---HSSHHH----HTTCHHHHHHHHGGGGGEECTTCCCH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH---Hhcccc----cHHHHHHHHHhhhccccCCCCCCCCH
Confidence            58999999999999999999999999999999999999954   433200    13567777777644467889999999


Q ss_pred             HHHHHH----hCCHHHHHHHHHhhh--------------------cCCchhhhcCchhHHH-----H----HhhccCCCC
Q 048100           82 LHVAAR----YGHAAVVGALIEFAE--------------------KQPGQELESGVKSTTR-----Y----MLGMKNDEE  128 (161)
Q Consensus        82 l~~a~~----~~~~~~~~~Ll~~g~--------------------~~~~~~~~~~~~~~~~-----~----l~~~~~~~g  128 (161)
                      ||+|++    .|+.+++++|++.+.                    ++... ...|..++..     +    .++.+|..|
T Consensus       205 Lh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~-~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G  283 (327)
T 1sw6_A          205 LHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDK-NGERKDSILENLDLKWIIANMLNAQDSNG  283 (327)
T ss_dssp             HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHCSHHHHHHHTTTCCCTTS
T ss_pred             HHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccc-cccCCChhHHHHHHHHHHHhCCCCCCCCC
Confidence            999999    899999999999853                    33332 4455555432     2    368899999


Q ss_pred             CcHhHHHHHcCCHHHHHHHHhCCCCCCCCcC
Q 048100          129 DTALHEAVQSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       129 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                      +||||+|+..|+.+++++|+++|++++.++.
T Consensus       284 ~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~  314 (327)
T 1sw6_A          284 DTCLNIAARLGNISIVDALLDYGADPFIANK  314 (327)
T ss_dssp             CCHHHHHHHHCCHHHHHHHHHTTCCTTCCCT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCcccCC
Confidence            9999999999999999999999999987764

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.94  E-value=5.5e-26  Score=155.19  Aligned_cols=101  Identities=19%  Similarity=0.210  Sum_probs=53.5

Q ss_pred             HHHHHHHHHhC--ccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCch----------hhhcCchhHHHHHhh--
Q 048100           57 TKFVELVLETC--PSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQ----------ELESGVKSTTRYMLG--  122 (161)
Q Consensus        57 ~~~v~~Ll~~~--~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~----------~~~~~~~~~~~~l~~--  122 (161)
                      .+++++|++.+  ++ ++..+..|.||||+|+..++.+++++|++.|++....          +...|+.+++++|++  
T Consensus        85 ~~~~~~Ll~~g~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  163 (228)
T 2dzn_A           85 LEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG  163 (228)
T ss_dssp             HHHHHHHHSSSSCCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred             HHHHHHHHhCCCCcc-cccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            44555555544  22 2334455555555555555555555555555444332          234444455555542  


Q ss_pred             -----ccCCCCCcHhHHHHHcCCHHHHHHHH-hCCCCCCCCc
Q 048100          123 -----MKNDEEDTALHEAVQSGSLDVVEILL-GADPAFPYSA  158 (161)
Q Consensus       123 -----~~~~~g~t~l~~a~~~~~~~~~~~Ll-~~~~~~~~~~  158 (161)
                           .+|..|+||||+|+..|+.+++++|+ +.|++++.++
T Consensus       164 ~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~  205 (228)
T 2dzn_A          164 KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVD  205 (228)
T ss_dssp             CCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBC
T ss_pred             cccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccC
Confidence                 24556666666666666666666666 5566655443

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.94  E-value=3.2e-26  Score=153.69  Aligned_cols=147  Identities=20%  Similarity=0.252  Sum_probs=117.1

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhC-ccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCc
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQ-LGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDS   80 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~-~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t   80 (161)
                      .|+|+.|+..|+.+.++.++..+. .++..+..|.||||+|+   ..+       ..+++++|++.|++ ++..+..|.|
T Consensus         6 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~---~~~-------~~~~v~~Ll~~g~~-~~~~~~~g~t   74 (201)
T 3hra_A            6 VGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAV---HNN-------DIEIAKALIDRGAD-INLQNSISDS   74 (201)
T ss_dssp             TTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHH---HHT-------CHHHHHHHHHTTCC-TTCCCTTSCC
T ss_pred             ccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHH---HcC-------CHHHHHHHHHcCCC-CCCCCCCCCC
Confidence            478999999999999999887665 77888889999999954   444       48899999998887 4677888899


Q ss_pred             HHHHHHHhCCHHHHHHHHHhhh-cCCch----------hhhcCchhHHHHHh-------hccCCCCCcHhHHHHHcCC--
Q 048100           81 PLHVAARYGHAAVVGALIEFAE-KQPGQ----------ELESGVKSTTRYML-------GMKNDEEDTALHEAVQSGS--  140 (161)
Q Consensus        81 ~l~~a~~~~~~~~~~~Ll~~g~-~~~~~----------~~~~~~~~~~~~l~-------~~~~~~g~t~l~~a~~~~~--  140 (161)
                      |||+|+..|+.+++++|++.+. +....          +...|+.+++++|+       +.+|..|+||||+|+..+.  
T Consensus        75 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~  154 (201)
T 3hra_A           75 PYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGN  154 (201)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCS
T ss_pred             HHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccch
Confidence            9999999999999999985543 33222          45667777888876       3567889999999999887  


Q ss_pred             ---HHHHHHHHhCCCCCCCCcC
Q 048100          141 ---LDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       141 ---~~~~~~Ll~~~~~~~~~~~  159 (161)
                         .+++++|+++|++++.++.
T Consensus       155 ~~~~~~v~~Ll~~ga~~~~~~~  176 (201)
T 3hra_A          155 QLYQDIVKLLMENGADQSIKDN  176 (201)
T ss_dssp             HHHHHHHHHHHHTTCCTTCCCT
T ss_pred             hhHHHHHHHHHHCCCCCCccCC
Confidence               8999999999998886654

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.94  E-value=1.7e-26  Score=163.33  Aligned_cols=145  Identities=14%  Similarity=0.088  Sum_probs=102.8

Q ss_pred             hHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCC-CcH
Q 048100            3 SDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKG-DSP   81 (161)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~-~t~   81 (161)
                      ||||.|+..|+.+.+++|++.+..++..+..|.||||+|   +..|       +.+++++|+++|++ ++..+..| .||
T Consensus        64 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A---~~~g-------~~~~v~~Ll~~ga~-~~~~~~~g~~t~  132 (285)
T 3kea_A           64 FPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYA---VDSG-------NMQTVKLFVKKNWR-LMFYGKTGWKTS  132 (285)
T ss_dssp             CHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHH---HHTT-------CHHHHHHHHHHCGG-GGGCSSSGGGSH
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHH---HHcC-------CHHHHHHHHhcCCC-CCccCCCCCCCH
Confidence            667777777777777777777777766777777777773   3333       36777777777766 45556666 577


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCch---------hhhcCchhHHHHHh------hccCCCCCcH-hHHHHHcCCHHHHH
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQ---------ELESGVKSTTRYML------GMKNDEEDTA-LHEAVQSGSLDVVE  145 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~---------~~~~~~~~~~~~l~------~~~~~~g~t~-l~~a~~~~~~~~~~  145 (161)
                      ||+|+..|+.+++++|+++|.+....         +...|+.+++++|+      +.+|..|+|| ||+|+..|+.++++
T Consensus       133 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~  212 (285)
T 3kea_A          133 FYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQ  212 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHH
Confidence            77777777777777777776654221         45666667777775      5677788887 88888888888888


Q ss_pred             HHHhCCCCCCCCc
Q 048100          146 ILLGADPAFPYSA  158 (161)
Q Consensus       146 ~Ll~~~~~~~~~~  158 (161)
                      +|+++|++++..+
T Consensus       213 ~Ll~~gad~~~~~  225 (285)
T 3kea_A          213 ALFKYDINIYSAN  225 (285)
T ss_dssp             HHTTSCBCSTTTT
T ss_pred             HHHHcCCCCCCCC
Confidence            8888888877653

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.94  E-value=1.9e-27  Score=163.37  Aligned_cols=129  Identities=18%  Similarity=0.217  Sum_probs=117.0

Q ss_pred             hHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHH
Q 048100            3 SDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPL   82 (161)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (161)
                      |+||.|+..|+.+.++.|++.+.+++..|..|.||||+|   +..|       ..+++++|++.|++ ++..|..|+|||
T Consensus        23 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A---~~~g-------~~~~v~~Ll~~ga~-~n~~d~~g~tpL   91 (229)
T 2vge_A           23 VLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNA---ICGA-------NYSIVDFLITAGAN-VNSPDSHGWTPL   91 (229)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHH---HHTT-------CHHHHHHHHHTTCC-TTCCCTTCCCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHH---HHcC-------CHHHHHHHHHCCCC-CCCCCCCCCCHH
Confidence            689999999999999999999999999999999999995   4455       48999999999987 577899999999


Q ss_pred             HHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccC-CCCCcHhHHH--HHcCCHHHHHHHHhCCCCCCCCcC
Q 048100           83 HVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKN-DEEDTALHEA--VQSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus        83 ~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~g~t~l~~a--~~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                      |+|+..|+.+++++|++.|++                 ++.++ ..|+||||+|  +..|+.+++++|++.|++++..++
T Consensus        92 h~A~~~g~~~~v~~Ll~~ga~-----------------~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~  154 (229)
T 2vge_A           92 HCAASCNDTVICMALVQHGAA-----------------IFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNS  154 (229)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCC-----------------TTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGG
T ss_pred             HHHHHcCCHHHHHHHHHcCCC-----------------cccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccC
Confidence            999999999999999999998                 55555 6999999999  999999999999999998876653

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.94  E-value=1.8e-26  Score=158.72  Aligned_cols=143  Identities=16%  Similarity=0.102  Sum_probs=97.7

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCcc-----chhccCC
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPS-----LLLQVNA   76 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~-----~~~~~~~   76 (161)
                      .||||.|+..|+.+.+++|++.+..++..+..|.||||+|+   ..+       ..+++++|++.+++     .....+.
T Consensus        46 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~---~~~-------~~~~v~~Ll~~~~~~~~~~~~~~~~~  115 (236)
T 1ikn_D           46 QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC---EQG-------CLASVGVLTQSCTTPHLHSILKATNY  115 (236)
T ss_dssp             CCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH---HHT-------CHHHHHHHHHSTTTTSSSCGGGCCCT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH---HcC-------CHHHHHHHHhcccchhHHHHhhccCC
Confidence            37888888888888888888877778878888888888844   333       37788888887653     2355677


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHhhhcCCch-----------hhhcCchhHHHHHh------hccCCCCCcHhHHHHHcC
Q 048100           77 KGDSPLHVAARYGHAAVVGALIEFAEKQPGQ-----------ELESGVKSTTRYML------GMKNDEEDTALHEAVQSG  139 (161)
Q Consensus        77 ~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-----------~~~~~~~~~~~~l~------~~~~~~g~t~l~~a~~~~  139 (161)
                      .|.||||+|+..|+.+++++|++.|++....           +...|+.+++++|+      +.+|..|.|||++|+..|
T Consensus       116 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~  195 (236)
T 1ikn_D          116 NGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRP  195 (236)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSS
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccC
Confidence            7888888888888888888888888775433           23334444555554      345556666666666666


Q ss_pred             CHHHHHHHHhCCCCC
Q 048100          140 SLDVVEILLGADPAF  154 (161)
Q Consensus       140 ~~~~~~~Ll~~~~~~  154 (161)
                      +.+++++|+++|++.
T Consensus       196 ~~~~~~~Ll~~ga~~  210 (236)
T 1ikn_D          196 STRIQQQLGQLTLEN  210 (236)
T ss_dssp             CHHHHHHHHTTSCGG
T ss_pred             chHHHHHHHHcchhh
Confidence            666666666666543

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.94  E-value=2.1e-26  Score=148.96  Aligned_cols=136  Identities=24%  Similarity=0.296  Sum_probs=100.6

Q ss_pred             ChHHHHHHHcCChHHHHHHHhh-hCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCc
Q 048100            2 NSDLYEAAAKGVIEPFNQLAID-RQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDS   80 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t   80 (161)
                      .++|+.|++.|+.+.++.|++. +..++..+..|.||||+ +.   .|       ..+++++|++.|++ ++..+..|.|
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~---~~-------~~~~v~~Ll~~g~~-~~~~~~~g~t   70 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MM---FG-------STAIALELLKQGAS-PNVQDTSGTS   70 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SC---TT-------CHHHHHHHHHTTCC-TTCCCTTSCC
T ss_pred             chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HH---cC-------CHHHHHHHHHCCCC-CCCcCCCCCC
Confidence            4799999999999999999987 33778899999999999 32   33       48999999999987 5778999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHhhhcCCch----------hhhcCchhHHHHHh-----hccCCCCCcHhHHHHHcCCHHHHH
Q 048100           81 PLHVAARYGHAAVVGALIEFAEKQPGQ----------ELESGVKSTTRYML-----GMKNDEEDTALHEAVQSGSLDVVE  145 (161)
Q Consensus        81 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~----------~~~~~~~~~~~~l~-----~~~~~~g~t~l~~a~~~~~~~~~~  145 (161)
                      |||+|+..|+.+++++|++.|++.+..          +...|+.+++++|+     +.+|..|.||||+|+..|+.++++
T Consensus        71 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~g~t~l~~A~~~~~~~~v~  150 (156)
T 1bd8_A           71 PVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVD  150 (156)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTSCTTCCCTTSCCHHHHHHHSCCHHHHH
T ss_pred             HHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhccCCCCcCCCCCCHHHHHHHcCcHHHHH
Confidence            999999999999999999999884332          23333344444443     234445555555555555555555


Q ss_pred             HHHh
Q 048100          146 ILLG  149 (161)
Q Consensus       146 ~Ll~  149 (161)
                      +|++
T Consensus       151 ~Ll~  154 (156)
T 1bd8_A          151 ILQG  154 (156)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            5543

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=1.2e-26  Score=151.55  Aligned_cols=122  Identities=19%  Similarity=0.142  Sum_probs=110.8

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      .||||.|+..|+.+.+++|++.+..++..|..|.||||+|   +..+       ..+++++|++.+++ ++..+..|+||
T Consensus        43 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A---~~~~-------~~~~v~~Ll~~g~~-~~~~~~~g~t~  111 (165)
T 3twr_A           43 STPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNA---CSYG-------HYEVAELLVKHGAV-VNVADLWKFTP  111 (165)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH---HHTT-------CHHHHHHHHHTTCC-TTCCCTTCCCH
T ss_pred             CCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHH---HHcC-------cHHHHHHHHhCCCC-CCCcCCCCCCH
Confidence            4899999999999999999999999999999999999995   4555       48999999999988 57789999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCC
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADP  152 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~  152 (161)
                      ||+|+..|+.+++++|+++|++                 ++.+|..|.||+++|.. ++.+++++|++.|+
T Consensus       112 L~~A~~~~~~~~v~~Ll~~ga~-----------------~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          112 LHEAAAKGKYEICKLLLQHGAD-----------------PTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC-----------------TTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC-----------------CcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence            9999999999999999999998                 78889999999999777 99999999998875

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.94  E-value=9.5e-26  Score=154.36  Aligned_cols=147  Identities=22%  Similarity=0.279  Sum_probs=126.8

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhh-CccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCc
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDR-QLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDS   80 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t   80 (161)
                      +++|+.|+..|+++.+++++..+ ...+..+..|.||||+|+   ..|       ..+++++|++.+.+ ++..+..|+|
T Consensus         7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~---~~g-------~~~~v~~Ll~~g~~-~~~~~~~g~t   75 (231)
T 3aji_A            7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWAC---SAG-------HTEIVEFLLQLGVP-VNDKDDAGWS   75 (231)
T ss_dssp             SSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHH---HHT-------CHHHHHHHHHTTCC-SCCCCTTSCC
T ss_pred             cchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHH---HcC-------cHHHHHHHHHhCCC-CCCcCCCCCC
Confidence            68999999999999999998764 446778999999999954   444       48999999999987 5777999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHhhhcCCch----------hhhcCchhHHHHHh------hccCCCCCcHhHHHHHcCCHHHH
Q 048100           81 PLHVAARYGHAAVVGALIEFAEKQPGQ----------ELESGVKSTTRYML------GMKNDEEDTALHEAVQSGSLDVV  144 (161)
Q Consensus        81 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~----------~~~~~~~~~~~~l~------~~~~~~g~t~l~~a~~~~~~~~~  144 (161)
                      |||+|+..|+.+++++|++.|.+....          +...++.+++++++      +.++..|.||||+|+..|+.+++
T Consensus        76 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v  155 (231)
T 3aji_A           76 PLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMV  155 (231)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             HHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHH
Confidence            999999999999999999999886544          45667777888886      45778999999999999999999


Q ss_pred             HHHHhCCCCCCCCcC
Q 048100          145 EILLGADPAFPYSAN  159 (161)
Q Consensus       145 ~~Ll~~~~~~~~~~~  159 (161)
                      ++|++.|++++.++.
T Consensus       156 ~~Ll~~g~~~~~~~~  170 (231)
T 3aji_A          156 HILLFYKASTNIQDT  170 (231)
T ss_dssp             HHHHHTTCCSCCCCT
T ss_pred             HHHHhcCCCccccCC
Confidence            999999999886643

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.94  E-value=9.9e-26  Score=159.32  Aligned_cols=146  Identities=22%  Similarity=0.236  Sum_probs=127.4

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      .||||.|+..|+.+.+++|++.+..++..|..|.||||+|+   ..+       ..+++++|++.++++ + .+..|.||
T Consensus        93 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~---~~~-------~~~~v~~Ll~~g~~~-~-~~~~g~t~  160 (285)
T 3d9h_A           93 VSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNAC---VSG-------SWDCVNLLLQHGASV-Q-PESDLASP  160 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHH---HHT-------CHHHHHHHHHTTCCS-S-CSCTTSCH
T ss_pred             CCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH---HcC-------HHHHHHHHHHCCCCC-C-CCCCCCCH
Confidence            48999999999999999999999999999999999999955   444       489999999998874 3 34569999


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCch----------hhhcCchhHHHHHhhc-----cCCCCCcHhHHHHHcCCHHHHHH
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQ----------ELESGVKSTTRYMLGM-----KNDEEDTALHEAVQSGSLDVVEI  146 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~----------~~~~~~~~~~~~l~~~-----~~~~g~t~l~~a~~~~~~~~~~~  146 (161)
                      ||+|+..|+.+++++|++.|++.+..          +...|+.+++++|++.     .+..|.||||+|+..++.+++++
T Consensus       161 L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~g~t~L~~A~~~~~~~~v~~  240 (285)
T 3d9h_A          161 IHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACL  240 (285)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTBCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            99999999999999999999887654          4677778889998742     47789999999999999999999


Q ss_pred             HHhCCCCCCCCcC
Q 048100          147 LLGADPAFPYSAN  159 (161)
Q Consensus       147 Ll~~~~~~~~~~~  159 (161)
                      |+++|++++.++.
T Consensus       241 Ll~~gad~~~~d~  253 (285)
T 3d9h_A          241 LMDFGADTQAKNA  253 (285)
T ss_dssp             HHHTTCCTTCCCT
T ss_pred             HHHCCCCCCCcCC
Confidence            9999999987664

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.94  E-value=1.1e-25  Score=153.63  Aligned_cols=148  Identities=19%  Similarity=0.226  Sum_probs=124.0

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCcc-ccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhC--ccchhccCCCC
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLG-SLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETC--PSLLLQVNAKG   78 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~--~~~~~~~~~~~   78 (161)
                      +||||.|++.|+.+.++.|++.+... +..+..|.||||+|   +..|       ..+++++|++.+  .+.....+..|
T Consensus         3 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A---~~~~-------~~~~v~~Ll~~~~~~~~~~~~~~~g   72 (228)
T 2dzn_A            3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWS---VSFQ-------AHEITSFLLSKMENVNLDDYPDDSG   72 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHH---HHTT-------CHHHHHHHHHTCTTCCGGGCCCTTS
T ss_pred             ccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHH---HHcC-------CHHHHHHHHhccccccccccCCCCC
Confidence            68999999999999999999877665 44899999999995   4455       489999999998  55333378999


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHhh--hcCCch----------hhhcCchhHHHHHh------hccCCCCCcHhHHHHHcCC
Q 048100           79 DSPLHVAARYGHAAVVGALIEFA--EKQPGQ----------ELESGVKSTTRYML------GMKNDEEDTALHEAVQSGS  140 (161)
Q Consensus        79 ~t~l~~a~~~~~~~~~~~Ll~~g--~~~~~~----------~~~~~~~~~~~~l~------~~~~~~g~t~l~~a~~~~~  140 (161)
                      +||||+|+..|+.+++++|++.|  .+....          +...++.+++++|+      +.+|..|+||||+|+..|+
T Consensus        73 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  152 (228)
T 2dzn_A           73 WTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGS  152 (228)
T ss_dssp             CCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence            99999999999999999999998  544332          45667777888887      4678899999999999999


Q ss_pred             HHHHHHHHhCC-CCCCCCcC
Q 048100          141 LDVVEILLGAD-PAFPYSAN  159 (161)
Q Consensus       141 ~~~~~~Ll~~~-~~~~~~~~  159 (161)
                      .+++++|++.| ++++.++.
T Consensus       153 ~~~v~~Ll~~g~~~~~~~d~  172 (228)
T 2dzn_A          153 LKLIELLCGLGKSAVNWQDK  172 (228)
T ss_dssp             HHHHHHHHTTTCCCSCCCCT
T ss_pred             HHHHHHHHhcCcccccCcCC
Confidence            99999999999 77776543

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.94  E-value=1.4e-25  Score=154.20  Aligned_cols=147  Identities=18%  Similarity=0.260  Sum_probs=125.6

Q ss_pred             ChHHHHHHHcCChHHHHHHHh----hhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCC
Q 048100            2 NSDLYEAAAKGVIEPFNQLAI----DRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAK   77 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~----~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~   77 (161)
                      .||||.|++.|+++.+++|++    .+...+..+..|.||||+|   +..|       ..+++++|++.|++ ++..+..
T Consensus        10 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A---~~~~-------~~~~v~~Ll~~g~~-~~~~~~~   78 (241)
T 1k1a_A           10 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLA---VITT-------LPSVVRLLVTAGAS-PMALDRH   78 (241)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHH---HHTT-------CHHHHHHHHHTTCC-TTCCCTT
T ss_pred             CcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHH---HHcC-------CHHHHHHHHHcCCC-ccccCCC
Confidence            589999999999999999986    6778899999999999995   4455       48999999999987 5677999


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHhhh----cCCch----------hhhcCchhHHHHHhh------ccC-CCCCcHhHHHH
Q 048100           78 GDSPLHVAARYGHAAVVGALIEFAE----KQPGQ----------ELESGVKSTTRYMLG------MKN-DEEDTALHEAV  136 (161)
Q Consensus        78 ~~t~l~~a~~~~~~~~~~~Ll~~g~----~~~~~----------~~~~~~~~~~~~l~~------~~~-~~g~t~l~~a~  136 (161)
                      |.||||+|+..++.+++++|++.+.    +....          +...|..++++++++      ..+ ..|.||||+|+
T Consensus        79 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~  158 (241)
T 1k1a_A           79 GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAV  158 (241)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHH
Confidence            9999999999999999999999987    33222          456677778888873      345 68999999999


Q ss_pred             HcCCHHHHHHHHhCCCCCCCCcC
Q 048100          137 QSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       137 ~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                      ..|+.+++++|++.|++++.++.
T Consensus       159 ~~~~~~~v~~Ll~~g~~~~~~~~  181 (241)
T 1k1a_A          159 ENNSLSMVQLLLQHGANVNAQMY  181 (241)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCBCT
T ss_pred             HcCCHHHHHHHHHcCCCCCCcCC
Confidence            99999999999999999986653

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.94  E-value=1.4e-25  Score=161.68  Aligned_cols=93  Identities=17%  Similarity=0.070  Sum_probs=82.7

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      .||||.|+..|+.+.+++|++.+..++..+..|.||||+|   +..|       +.+++++|++.|++ ++..+..|.||
T Consensus        59 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A---~~~g-------~~~iv~~Ll~~g~~-~~~~~~~g~t~  127 (351)
T 3utm_A           59 STPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNA---CSYG-------HYEVTELLLKHGAC-VNAMDLWQFTP  127 (351)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH---HHTT-------CHHHHHHHHHTTCC-TTCCCTTCCCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHH---HHCC-------CHHHHHHHHHCCCC-CCCCCCCCCCH
Confidence            4899999999999999999999999999999999999995   4455       48999999999887 56778999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCC
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQP  105 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~  105 (161)
                      ||+|+..|+.+++++|+++|++..
T Consensus       128 L~~A~~~~~~~~v~~Ll~~g~~~~  151 (351)
T 3utm_A          128 LHEAASKNRVEVCSLLLSHGADPT  151 (351)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCc
Confidence            999999999999999999988754

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.94  E-value=3.4e-26  Score=152.82  Aligned_cols=122  Identities=20%  Similarity=0.221  Sum_probs=112.5

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      .||||.|+..|+.+.++.|++.+..++..+..|.||||+|+   ..+       ..+++++|++.|++ ++..+..|.||
T Consensus        69 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~---~~~-------~~~~v~~Ll~~g~~-~~~~~~~g~t~  137 (192)
T 2rfm_A           69 STALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSI---IFG-------YSEMSYFLLEHGAN-VNDRNLEGETP  137 (192)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHH---HHT-------CHHHHHHHHHTTCC-SSCCCTTCCCH
T ss_pred             ccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH---HcC-------CHHHHHHHHHCCCC-CCCCCCCCCCH
Confidence            48999999999999999999999999999999999999954   444       48999999999987 57789999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCC
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGAD  151 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  151 (161)
                      ||+|+..|+.+++++|+++|++                 ++.+|..|.||+++|+..|+.+++++|++.|
T Consensus       138 L~~A~~~~~~~~v~~Ll~~ga~-----------------~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          138 LIVASKYGRSEIVKKLLELGAD-----------------ISARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCC-----------------TTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCC-----------------CCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            9999999999999999999998                 7788999999999999999999999999754

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.94  E-value=1.3e-25  Score=154.17  Aligned_cols=147  Identities=24%  Similarity=0.248  Sum_probs=128.0

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      .||||.|+..|+.+.+++|++.+..++..+..|.||||+|+   ..|       ..+++++|++.|.+ ++..+..|.||
T Consensus        12 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~---~~~-------~~~~v~~Ll~~g~~-~~~~~~~g~t~   80 (237)
T 3b7b_A           12 RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAA---ENN-------HLEAVKYLIKAGAL-VDPKDAEGSTC   80 (237)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH---HTT-------CHHHHHHHHTTTCC-CCCCCTTSCCH
T ss_pred             CCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHH---HhC-------CHHHHHHHHhCCCC-CCCCCCCCCcH
Confidence            58999999999999999999999999999999999999954   444       48999999999987 56778999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhh-hcCCch----------hhhcCchhHHHHHh------hccCCCCCcHhHHHHHcCCHHHH
Q 048100           82 LHVAARYGHAAVVGALIEFA-EKQPGQ----------ELESGVKSTTRYML------GMKNDEEDTALHEAVQSGSLDVV  144 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g-~~~~~~----------~~~~~~~~~~~~l~------~~~~~~g~t~l~~a~~~~~~~~~  144 (161)
                      ||+|+..|+.+++++|++.| .+....          +...+..+++++|+      +.++..|.||||+|+..|+.+++
T Consensus        81 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~  160 (237)
T 3b7b_A           81 LHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIA  160 (237)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHH
Confidence            99999999999999999998 443322          45667778888886      46788999999999999999999


Q ss_pred             HHHHhCCCCCCCCcC
Q 048100          145 EILLGADPAFPYSAN  159 (161)
Q Consensus       145 ~~Ll~~~~~~~~~~~  159 (161)
                      ++|++.|++++..+.
T Consensus       161 ~~Ll~~g~~~~~~~~  175 (237)
T 3b7b_A          161 EILLAAKCDLHAVNI  175 (237)
T ss_dssp             HHHHTTTCCTTCCCT
T ss_pred             HHHHHcCCCCCCcCC
Confidence            999999999886653

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.94  E-value=2.5e-26  Score=150.24  Aligned_cols=125  Identities=21%  Similarity=0.196  Sum_probs=114.7

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      .||||.|+..|+.+.+++|++.+..++..+..|.||||+|+   ..+       ..+++++|++.+++ ++..+..|.||
T Consensus        37 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~---~~~-------~~~~v~~Ll~~g~~-~~~~~~~g~t~  105 (167)
T 3v31_A           37 FTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLAC---SKG-------YTDIVKMLLDCGVD-VNEYDWNGGTP  105 (167)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH---HHT-------CHHHHHHHHHHTCC-TTCCCTTSCCH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHH---HcC-------CHHHHHHHHHCCCC-CCcCCCCCCCH
Confidence            58999999999999999999999999999999999999954   444       48999999999987 57789999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCC
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAF  154 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~  154 (161)
                      ||+|+..|+.+++++|+++|++                 ++.+|..|.||+++|+..|+.+++++|+++++++
T Consensus       106 L~~A~~~~~~~~v~~Ll~~g~~-----------------~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~  161 (167)
T 3v31_A          106 LLYAVHGNHVKCVKMLLESGAD-----------------PTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL  161 (167)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC-----------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC-----------------CCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            9999999999999999999998                 7788999999999999999999999999876654

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.94  E-value=5.5e-26  Score=165.27  Aligned_cols=148  Identities=15%  Similarity=0.144  Sum_probs=104.5

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccch----------
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLL----------   71 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~----------   71 (161)
                      .||||.|+..|+++.|++|++.+..++..|..|.||||+|+.   .|       +.+++++|++.+++..          
T Consensus        21 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~---~g-------~~~~v~~Ll~~g~~~~~~~g~t~L~~   90 (364)
T 3ljn_A           21 MEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACK---FG-------CVDTAKYLASVGEVHSLWHGQKPIHL   90 (364)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH---HC-------CHHHHHHHHHHCCCCCCBTTBCHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHH---cC-------CHHHHHHHHHCCCCccccCCCCHHHH
Confidence            378999999999999999999998899999999999999554   33       3566666666654311          


Q ss_pred             ------------------------hc-----------------cCCCCCcHHHHHHHhC--CHHHHHHHHHhhhcCCch-
Q 048100           72 ------------------------LQ-----------------VNAKGDSPLHVAARYG--HAAVVGALIEFAEKQPGQ-  107 (161)
Q Consensus        72 ------------------------~~-----------------~~~~~~t~l~~a~~~~--~~~~~~~Ll~~g~~~~~~-  107 (161)
                                              +.                 .+..|.||||+|+..|  +.+++++|++.|++++.. 
T Consensus        91 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d  170 (364)
T 3ljn_A           91 AVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKD  170 (364)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCC
T ss_pred             HHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccC
Confidence                                    11                 4456677777777777  677777777776665443 


Q ss_pred             ---------hhhcCchhHHHHHh-----------hccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCcC
Q 048100          108 ---------ELESGVKSTTRYML-----------GMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       108 ---------~~~~~~~~~~~~l~-----------~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                               +...|+.+++++|+           +..|..|+||||+|+..|+.+++++|+++|++++.++.
T Consensus       171 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~  242 (364)
T 3ljn_A          171 KADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDN  242 (364)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Confidence                     34555666666664           24556777777777777777777777777777765543

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.94  E-value=1.5e-26  Score=163.56  Aligned_cols=145  Identities=20%  Similarity=0.176  Sum_probs=124.0

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      .||||+|+..|+.+.++.|++.+..++..  .|.||||+   |+..|+       .+++++|++.|++ ++..+..|+||
T Consensus        32 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~g~t~L~~---A~~~g~-------~~~v~~Ll~~ga~-~~~~d~~g~t~   98 (285)
T 3kea_A           32 HSASYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQ---AATLED-------TKIVKILLFSGLD-DSQFDDKGNTA   98 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTGGGSCC--TTCCHHHH---HTTSSS-------CHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCHHHH---HHHcCC-------HHHHHHHHHCCCC-CCCcCCCCCcH
Confidence            48999999999999999999998888777  49999999   556664       8899999999988 57789999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCch-----------hhhcCchhHHHHHhhc----cCC-CCCcHhHHHHHcCCHHHHH
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQ-----------ELESGVKSTTRYMLGM----KND-EEDTALHEAVQSGSLDVVE  145 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~-----------~~~~~~~~~~~~l~~~----~~~-~g~t~l~~a~~~~~~~~~~  145 (161)
                      ||+|+..|+.+++++|+++|++....           +...|+.+++++|+..    .+. .|.||||+|+..|+.++++
T Consensus        99 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~  178 (285)
T 3kea_A           99 LYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMI  178 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHH
Confidence            99999999999999999999886543           3456677788888843    233 7889999999999999999


Q ss_pred             HHHhCCCCCCCCcC
Q 048100          146 ILLGADPAFPYSAN  159 (161)
Q Consensus       146 ~Ll~~~~~~~~~~~  159 (161)
                      +|+++|++++.++.
T Consensus       179 ~Ll~~gad~n~~~~  192 (285)
T 3kea_A          179 LLLDYMTSTNTNNS  192 (285)
T ss_dssp             HHHHHHHHTCTTCC
T ss_pred             HHHHcCCCCCcccC
Confidence            99999988876653

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.94  E-value=1.3e-25  Score=166.81  Aligned_cols=145  Identities=23%  Similarity=0.226  Sum_probs=107.8

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      .||||.|+..|+++.|++|++.+..++..+..|.||||+|+   ..|       +.+++++|++.+++ ++..+..|.||
T Consensus        15 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~---~~g-------~~~~v~~Ll~~g~~-~~~~~~~g~t~   83 (437)
T 1n11_A           15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAA---RAG-------HTEVAKYLLQNKAK-VNAKAKDDQTP   83 (437)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHH---HHT-------CHHHHHHHHHHTCC-SSCCCTTSCCH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH---HcC-------CHHHHHHHHhCCCC-CCCCCCCCCCH
Confidence            47888888888888888888888888888888888888854   444       47888888888876 46677888888


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCch----------hhhcCchhHHHHHhh------ccCCCCCcHhHHHHHcCCHHHHH
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQ----------ELESGVKSTTRYMLG------MKNDEEDTALHEAVQSGSLDVVE  145 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~----------~~~~~~~~~~~~l~~------~~~~~g~t~l~~a~~~~~~~~~~  145 (161)
                      ||+|+..|+.+++++|+++|++.+..          +...|+.+++++++.      ..+..|.||||+|+..|+.++++
T Consensus        84 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~  163 (437)
T 1n11_A           84 LHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAE  163 (437)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHH
Confidence            88888888888888888888765433          345555666666653      34556677777777777777777


Q ss_pred             HHHhCCCCCCCC
Q 048100          146 ILLGADPAFPYS  157 (161)
Q Consensus       146 ~Ll~~~~~~~~~  157 (161)
                      +|++.|++++..
T Consensus       164 ~Ll~~g~~~~~~  175 (437)
T 1n11_A          164 LLLERDAHPNAA  175 (437)
T ss_dssp             HHHHTTCCTTCC
T ss_pred             HHHhCCCCCCCC
Confidence            777766666544

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=5.8e-27  Score=161.74  Aligned_cols=126  Identities=17%  Similarity=0.234  Sum_probs=81.9

Q ss_pred             hHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHH
Q 048100            3 SDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPL   82 (161)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (161)
                      |+||.|+..|+.+.++.|++.+.+++..|..|.||||+|+   ..|       +.+++++|++.|++ ++..|..|+|||
T Consensus        39 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~---~~g-------~~~~v~~Ll~~ga~-~~~~d~~g~tpL  107 (239)
T 1ycs_B           39 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAV---CAG-------HTEIVKFLVQFGVN-VNAADSDGWTPL  107 (239)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHH---HHT-------CHHHHHHHHHHTCC-TTCCCTTCCCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH---HcC-------CHHHHHHHHHcCCC-CCccCCCCCCHH
Confidence            5667777777777777776666666666667777777733   333       36677777776665 455566677777


Q ss_pred             HHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCC-cHhHHH--HHcCCHHHHHHHHhCCCCCCC
Q 048100           83 HVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEED-TALHEA--VQSGSLDVVEILLGADPAFPY  156 (161)
Q Consensus        83 ~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~-t~l~~a--~~~~~~~~~~~Ll~~~~~~~~  156 (161)
                      |+|+..|+.+++++|+++|++                 ++.++..|. ||+|+|  +..|+.+++++|++.|++++.
T Consensus       108 ~~A~~~~~~~~v~~Ll~~ga~-----------------~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~  167 (239)
T 1ycs_B          108 HCAASCNNVQVCKFLVESGAA-----------------VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGI  167 (239)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC-----------------TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTT
T ss_pred             HHHHHcCCHHHHHHHHHcCCC-----------------cceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccc
Confidence            777777777777777777666                 444555444 777766  556667777777766665544

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.94  E-value=8e-26  Score=159.18  Aligned_cols=134  Identities=17%  Similarity=0.170  Sum_probs=106.1

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhC-ccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCc
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQ-LGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDS   80 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~-~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t   80 (161)
                      .||||+|+..|+.+.++.|++.+. ..+..+..|.||||+|+...     ....+..+++++|++.|.. ....+..|+|
T Consensus       112 ~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~-----~~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t  185 (276)
T 4hbd_A          112 NTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALAT-----LKTQDDIETVLQLFRLGNI-NAKASQAGQT  185 (276)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCC-----CCSHHHHHHHHHHHHHSCT-TCCCTTTCCC
T ss_pred             CCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHH-----hhhhhhHHHHHHHHHcCCC-ccccCCCCCC
Confidence            589999999999999999999987 88999999999999954211     0111258899999999866 4667888999


Q ss_pred             HHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHh-CCCCCCCCc
Q 048100           81 PLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLG-ADPAFPYSA  158 (161)
Q Consensus        81 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~  158 (161)
                      |||+|+..|+.+++++|++.|++                 ++.+|..|+||||+|+..|+.+++++|++ .|++++.++
T Consensus       186 pLh~A~~~g~~~~v~~Ll~~gad-----------------~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d  247 (276)
T 4hbd_A          186 ALMLAVSHGRVDVVKALLACEAD-----------------VNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTD  247 (276)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCC-----------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCC
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCC-----------------CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcC
Confidence            99999999999999999999998                 55566666666666666666666666666 566665444

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.94  E-value=5.1e-26  Score=159.58  Aligned_cols=135  Identities=14%  Similarity=0.132  Sum_probs=112.8

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccC--------------CCCcHHHHHHHHhhhcccccccccHHHHHHHHH--
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIH--------------KKNSVLHVNIIASYTQNKEGESVSTKFVELVLE--   65 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~--------------~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~--   65 (161)
                      .||||.|+..|+.+.++.|++.+..++..+.              .|.||||+|   +..|       ..+++++|++  
T Consensus       102 ~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A---~~~g-------~~~~v~~Ll~~~  171 (273)
T 2pnn_A          102 QTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLA---ACTN-------QLAIVKFLLQNS  171 (273)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHH---HHTT-------CHHHHHHHHHCS
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHH---HHcC-------CHHHHHHHHhcc
Confidence            4899999999999999999999999988887              799999995   4455       4899999999  


Q ss_pred             -hCccchhccCCCCCcHHHHHHHhCC---------HHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHH
Q 048100           66 -TCPSLLLQVNAKGDSPLHVAARYGH---------AAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEA  135 (161)
Q Consensus        66 -~~~~~~~~~~~~~~t~l~~a~~~~~---------~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a  135 (161)
                       .|++ ++..|..|+||||+|+..|+         .+++++|++.|++.+...          .+++.+|..|+||||+|
T Consensus       172 ~~gad-~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~----------~~~~~~d~~g~TpL~~A  240 (273)
T 2pnn_A          172 WQPAD-ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTL----------KLEEITNRKGLTPLALA  240 (273)
T ss_dssp             SCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTC----------CGGGCCCTTSCCHHHHH
T ss_pred             cCCCC-ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhccccc----------ccccccCCCCCCHHHHH
Confidence             7887 57889999999999999998         899999999999832110          00135899999999999


Q ss_pred             HHcCCHHHHHHHHhCCC-CCCCC
Q 048100          136 VQSGSLDVVEILLGADP-AFPYS  157 (161)
Q Consensus       136 ~~~~~~~~~~~Ll~~~~-~~~~~  157 (161)
                      +..|+.+++++|+++|+ |...+
T Consensus       241 ~~~g~~~iv~~Ll~~ga~dp~~~  263 (273)
T 2pnn_A          241 ASSGKIGVLAYILQREIHEPECR  263 (273)
T ss_dssp             HHTTCHHHHHHHHHHHTC-----
T ss_pred             HHhChHHHHHHHHHCCCCCchhh
Confidence            99999999999999988 55443

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.94  E-value=3.8e-26  Score=159.05  Aligned_cols=133  Identities=14%  Similarity=0.116  Sum_probs=113.8

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCcccccc--------------CCCCcHHHHHHHHhhhcccccccccHHHHHHHHH--
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVI--------------HKKNSVLHVNIIASYTQNKEGESVSTKFVELVLE--   65 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~--------------~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~--   65 (161)
                      .||||.|+..|+.+.++.|++.+..++..+              ..|.||||+|   +..|       ..+++++|++  
T Consensus        94 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A---~~~g-------~~~~v~~Ll~~~  163 (260)
T 3jxi_A           94 QTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLA---ACTN-------QPHIVHYLTENG  163 (260)
T ss_dssp             BCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHH---HHTT-------CHHHHHHHHHCS
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHH---HHcC-------CHHHHHHHHhcc
Confidence            489999999999999999999999999888              6899999995   4555       4899999999  


Q ss_pred             -hCccchhccCCCCCcHHHHHHHhCC---------HHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHH
Q 048100           66 -TCPSLLLQVNAKGDSPLHVAARYGH---------AAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEA  135 (161)
Q Consensus        66 -~~~~~~~~~~~~~~t~l~~a~~~~~---------~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a  135 (161)
                       .|++ ++..|..|+||||+|+..++         .+++++|++.|++....          ..+.+.+|..|+||||+|
T Consensus       164 ~~ga~-~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~----------~~~~~~~d~~g~tpL~~A  232 (260)
T 3jxi_A          164 HKQAD-LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPD----------TNLEALLNNDGLSPLMMA  232 (260)
T ss_dssp             SCCCC-TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTT----------CCGGGCCCTTSCCHHHHH
T ss_pred             ccCCC-CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccc----------cchhhcccCCCCCHHHHH
Confidence             7887 57889999999999999888         79999999999982211          000167999999999999


Q ss_pred             HHcCCHHHHHHHHhCCCCCC
Q 048100          136 VQSGSLDVVEILLGADPAFP  155 (161)
Q Consensus       136 ~~~~~~~~~~~Ll~~~~~~~  155 (161)
                      +..|+.+++++|+++|++..
T Consensus       233 ~~~g~~~~v~~Ll~~g~~~~  252 (260)
T 3jxi_A          233 AKTGKIGIFQHIIRREIADA  252 (260)
T ss_dssp             HHTTCHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHhCCCcc
Confidence            99999999999998876543

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.94  E-value=7.5e-26  Score=157.26  Aligned_cols=147  Identities=17%  Similarity=0.169  Sum_probs=101.9

Q ss_pred             ChHHHHHHHcC-------------ChHHHHHHHhhhCccc-cccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhC
Q 048100            2 NSDLYEAAAKG-------------VIEPFNQLAIDRQLGS-LVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETC   67 (161)
Q Consensus         2 ~~~l~~A~~~g-------------~~~~v~~ll~~~~~~~-~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~   67 (161)
                      .||||.|+..|             +.+.++.|+..+...+ ..|..|.||||+|   +..|       ..+++++|++.|
T Consensus        11 ~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A---~~~g-------~~~~v~~Ll~~g   80 (253)
T 1yyh_A           11 FTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLA---ARYS-------RSDAAKRLLEAS   80 (253)
T ss_dssp             -----------------------------------------CCCTTSCCHHHHH---HHTT-------CHHHHHHHHHTT
T ss_pred             CcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHH---HHcC-------CHHHHHHHHHcC
Confidence            58999999987             8999999998887774 4589999999994   4555       489999999999


Q ss_pred             ccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhh-cCCch----------hhhcCchhHHHHHh------hccCCCCCc
Q 048100           68 PSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAE-KQPGQ----------ELESGVKSTTRYML------GMKNDEEDT  130 (161)
Q Consensus        68 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~-~~~~~----------~~~~~~~~~~~~l~------~~~~~~g~t  130 (161)
                      ++ ++..+..|+||||+|+..|+.+++++|++.+. +....          +...++.+++++|+      +.+|..|+|
T Consensus        81 ~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t  159 (253)
T 1yyh_A           81 AD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKS  159 (253)
T ss_dssp             CC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCB
T ss_pred             CC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCC
Confidence            87 57789999999999999999999999999987 33322          45666677888886      467889999


Q ss_pred             HhHHHHHcCCHHHHHHHHhCCCCCCCCcC
Q 048100          131 ALHEAVQSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       131 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                      |||+|+..|+.+++++|++.|++++.++.
T Consensus       160 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  188 (253)
T 1yyh_A          160 ALHWAAAVNNVDAAVVLLKNGANKDMQNN  188 (253)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence            99999999999999999999999887654

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.94  E-value=5.6e-26  Score=157.92  Aligned_cols=132  Identities=17%  Similarity=0.154  Sum_probs=113.1

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCC-------------CCcHHHHHHHHhhhcccccccccHHHHHHHHH---
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHK-------------KNSVLHVNIIASYTQNKEGESVSTKFVELVLE---   65 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~-------------g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~---   65 (161)
                      .||||.|+..|+.+.++.|++.+..++..+..             |.||||+|   +..|       ..+++++|++   
T Consensus        91 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A---~~~~-------~~~~v~~Ll~~~~  160 (256)
T 2etb_A           91 HSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLA---ACTK-------QWDVVTYLLENPH  160 (256)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHH---HHTT-------CHHHHHHHHHCSS
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHH---HHcC-------CHHHHHHHHhccc
Confidence            48999999999999999999999999888876             99999995   4455       4899999999   


Q ss_pred             hCccchhccCCCCCcHHHHHHH--hCCHH-------HHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHH
Q 048100           66 TCPSLLLQVNAKGDSPLHVAAR--YGHAA-------VVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAV  136 (161)
Q Consensus        66 ~~~~~~~~~~~~~~t~l~~a~~--~~~~~-------~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~  136 (161)
                      .|++ ++..|..|+||||+|+.  .++.+       ++++|++.|++....          ..+++.+|..|+||||+|+
T Consensus       161 ~ga~-~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~----------~~~~~~~d~~g~tpL~~A~  229 (256)
T 2etb_A          161 QPAS-LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPT----------VQLEEISNHQGLTPLKLAA  229 (256)
T ss_dssp             CCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTT----------CCGGGCCCTTSCCHHHHHH
T ss_pred             cCCC-cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccc----------cccccccCCCCCCHHHHHH
Confidence            8887 57889999999999999  78888       999999999982100          0001789999999999999


Q ss_pred             HcCCHHHHHHHHhCCCCC
Q 048100          137 QSGSLDVVEILLGADPAF  154 (161)
Q Consensus       137 ~~~~~~~~~~Ll~~~~~~  154 (161)
                      ..|+.+++++|+++|++.
T Consensus       230 ~~g~~~~v~~Ll~~g~~~  247 (256)
T 2etb_A          230 KEGKIEIFRHILQREFSG  247 (256)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHhCCCCC
Confidence            999999999999887653

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.94  E-value=3.9e-26  Score=160.30  Aligned_cols=147  Identities=22%  Similarity=0.193  Sum_probs=100.9

Q ss_pred             hHHHHHHHcCChHHHHHHHhhhCc--------cccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhcc
Q 048100            3 SDLYEAAAKGVIEPFNQLAIDRQL--------GSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQV   74 (161)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~--------~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~   74 (161)
                      ++|+.|++.|+++.|+.|++.+..        .+..+..|.||||+|+   ..++      ...++++|++.|++ ++..
T Consensus        13 ~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~---~~~~------~~~~v~~Ll~~Gad-vn~~   82 (269)
T 4b93_B           13 EKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCP---KCAP------AQKRLAKVPASGLG-VNVT   82 (269)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTCC-------------------------------------------------CCCC-TTCC
T ss_pred             hHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHH---HhCC------HHHHHHHHHHCCCC-CCCc
Confidence            689999999999999999976653        3456778999999954   3332      24588999999988 5788


Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCch----------hhhcCchhHHHHHh------hccCCCCCcHhHHHHHc
Q 048100           75 NAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQ----------ELESGVKSTTRYML------GMKNDEEDTALHEAVQS  138 (161)
Q Consensus        75 ~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~----------~~~~~~~~~~~~l~------~~~~~~g~t~l~~a~~~  138 (161)
                      |.+|+||||+|+..|+.+++++|++.|++....          +...+..+++++|+      +.+|..|+||||+|+..
T Consensus        83 d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~  162 (269)
T 4b93_B           83 SQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSG  162 (269)
T ss_dssp             CTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHT
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
Confidence            999999999999999999999999999886655          34555666788776      56889999999999999


Q ss_pred             CCHHHHHHHHhCCCCCCCCcC
Q 048100          139 GSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       139 ~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                      |+.+++++|++.|++++.++.
T Consensus       163 g~~~~v~~Ll~~gadvn~~~~  183 (269)
T 4b93_B          163 GHHELVALLLQHGASINASNN  183 (269)
T ss_dssp             TCGGGHHHHHHTTCCTTCBCT
T ss_pred             CCHHHHHHHHHCCCCCCcccc
Confidence            999999999999999987654

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.94  E-value=3.4e-25  Score=150.84  Aligned_cols=144  Identities=17%  Similarity=0.146  Sum_probs=122.5

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhC-ccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCc
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQ-LGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDS   80 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~-~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t   80 (161)
                      .||||.|+..|+.+.+++|++.+. ..+..+..|.||||+|+   ..+       ..+++++|++.+++ ++..+..|.|
T Consensus        59 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~---~~~-------~~~~~~~Ll~~g~~-~~~~~~~g~t  127 (223)
T 2f8y_A           59 RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAA---RLA-------VEGMLEDLINSHAD-VNAVDDLGKS  127 (223)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHH---HHT-------CHHHHHHHHHTTCC-TTCBCTTSCB
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHH---HhC-------cHHHHHHHHHcCCC-CcCcCCCCCc
Confidence            489999999999999999998775 77888899999999954   444       48899999998887 5677889999


Q ss_pred             HHHHHHHhCCHHHHHHHHHhhhcCCch----------hhhcCchhHHHHHh------hccCCCCCcHhHHHHHcCCHHHH
Q 048100           81 PLHVAARYGHAAVVGALIEFAEKQPGQ----------ELESGVKSTTRYML------GMKNDEEDTALHEAVQSGSLDVV  144 (161)
Q Consensus        81 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~----------~~~~~~~~~~~~l~------~~~~~~g~t~l~~a~~~~~~~~~  144 (161)
                      |||+|+..++.+++++|++.|++.+..          +...|+.+++++|+      +.+|..|.||+++|+..++.+++
T Consensus       128 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~  207 (223)
T 2f8y_A          128 ALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIV  207 (223)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHH
Confidence            999999999999999999998886654          45667777888886      46788999999999999999999


Q ss_pred             HHHHhCCCCCCC
Q 048100          145 EILLGADPAFPY  156 (161)
Q Consensus       145 ~~Ll~~~~~~~~  156 (161)
                      ++|+++|+....
T Consensus       208 ~~L~~~g~~~~~  219 (223)
T 2f8y_A          208 RLLDEYNLVRSP  219 (223)
T ss_dssp             HHHHHTTCSSCC
T ss_pred             HHHHHcCCCccc
Confidence            999999987543

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.93  E-value=4e-25  Score=151.41  Aligned_cols=111  Identities=22%  Similarity=0.201  Sum_probs=89.7

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCcc-----ccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCC
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLG-----SLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNA   76 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~-----~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~   76 (161)
                      .||||.|+..|+.+.++.|++.+...     +..|..|.||||+|   +..+       ..+++++|++.|+++ +..+.
T Consensus        38 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A---~~~~-------~~~~v~~Ll~~g~~~-~~~~~  106 (232)
T 2rfa_A           38 ETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIA---VINQ-------NVNLVRALLARGASV-SARAT  106 (232)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHH---HHTT-------CHHHHHHHHHTTCCT-TCCCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHH---HHcC-------CHHHHHHHHhCCCCC-CcccC
Confidence            58999999999999999999887765     56678999999995   4455       489999999999874 44333


Q ss_pred             -------------CCCcHHHHHHHhCCHHHHHHHHHhhhcCCch----------hhhcCchhHH----HHHhhc
Q 048100           77 -------------KGDSPLHVAARYGHAAVVGALIEFAEKQPGQ----------ELESGVKSTT----RYMLGM  123 (161)
Q Consensus        77 -------------~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~----------~~~~~~~~~~----~~l~~~  123 (161)
                                   .|.||||+|+..|+.+++++|+++|++.+..          +...++.+++    ++|+..
T Consensus       107 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~  180 (232)
T 2rfa_A          107 GSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSY  180 (232)
T ss_dssp             SGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHT
T ss_pred             CcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhc
Confidence                         7999999999999999999999999987665          3445555555    666543

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.93  E-value=2.4e-25  Score=165.37  Aligned_cols=147  Identities=22%  Similarity=0.239  Sum_probs=125.2

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      .||||.|+..|+.+.++.|++.+...+..+..|.||||+|   +..|       +.+++++|++++++ .+..+..|.||
T Consensus       213 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A---~~~g-------~~~~v~~Ll~~~~~-~~~~~~~g~t~  281 (437)
T 1n11_A          213 YTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLA---AQEG-------HAEMVALLLSKQAN-GNLGNKSGLTP  281 (437)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH---HHTT-------CHHHHHHHHTTTCC-TTCCCTTCCCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH---HHCC-------CHHHHHHHHhcCCC-CCCCCCCCCCH
Confidence            4789999999999999999998888888889999999994   4444       48899999998877 46778889999


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCch----------hhhcCchhHHHHHh------hccCCCCCcHhHHHHHcCCHHHHH
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQ----------ELESGVKSTTRYML------GMKNDEEDTALHEAVQSGSLDVVE  145 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~----------~~~~~~~~~~~~l~------~~~~~~g~t~l~~a~~~~~~~~~~  145 (161)
                      ||+|++.|+.+++++|+++|++.+..          +...|+.+++++|+      +.+|..|+||||+|+..|+.++++
T Consensus       282 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~  361 (437)
T 1n11_A          282 LHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVT  361 (437)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHH
Confidence            99999999999999999998876554          45667777888886      568889999999999999999999


Q ss_pred             HHHhCCCCCCCCcC
Q 048100          146 ILLGADPAFPYSAN  159 (161)
Q Consensus       146 ~Ll~~~~~~~~~~~  159 (161)
                      +|+++|++++.++.
T Consensus       362 ~Ll~~ga~~~~~~~  375 (437)
T 1n11_A          362 LLLKNGASPNEVSS  375 (437)
T ss_dssp             HHHHTTCCSCCCCS
T ss_pred             HHHHCcCCCCCCCC
Confidence            99999999887654

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.93  E-value=2.3e-26  Score=156.90  Aligned_cols=129  Identities=22%  Similarity=0.220  Sum_probs=107.7

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHh-CccchhccCCCCCc
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLET-CPSLLLQVNAKGDS   80 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~t   80 (161)
                      .|+||.|+..|+.+.++.|++.+..++.+|..|.||||+|   +..|       +.+++++|++. +.+ ++..+..|+|
T Consensus        74 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A---~~~~-------~~~~v~~Ll~~~g~~-~~~~d~~g~t  142 (222)
T 3ehr_A           74 DNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWA---CHGG-------HKDIVEMLFTQPNIE-LNQQNKLGDT  142 (222)
T ss_dssp             SCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH---HHTT-------CHHHHHHHTTSTTCC-CCCCCTTSCC
T ss_pred             ccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHH---HHcC-------CHHHHHHHHcCCCCC-ccccCCCCCC
Confidence            5899999999999999999999999999999999999994   4555       48999999998 666 6788999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCc
Q 048100           81 PLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSA  158 (161)
Q Consensus        81 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  158 (161)
                      |||+|+..|+.+++++|+++|++                 ++.+|..|.|||++|+..++.++++.|++.|++....+
T Consensus       143 pL~~A~~~~~~~~v~~Ll~~ga~-----------------~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~  203 (222)
T 3ehr_A          143 ALHAAAWKGYADIVQLLLAKGAR-----------------TDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSN  203 (222)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTCC-----------------SCCCCTTSCCHHHHCCSHHHHHHHC-------------
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCC-----------------CccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccc
Confidence            99999999999999999999998                 77889999999999999999999999999988876544

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.93  E-value=2.2e-25  Score=160.63  Aligned_cols=149  Identities=17%  Similarity=0.178  Sum_probs=118.9

Q ss_pred             ChHHHHHHHcCChHHHHHHHh-hhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCc
Q 048100            2 NSDLYEAAAKGVIEPFNQLAI-DRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDS   80 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~-~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t   80 (161)
                      .||||.|++.|+.+.|+.|+. .+.+++..|..|.|++|+++.++..+.      ...++++|+++|++ ++..+..|+|
T Consensus       169 ~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~------~~~i~~lLl~~gad-~n~~d~~g~t  241 (337)
T 4g8k_A          169 ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSD------VEAITHLLLDHGAD-VNVRGERGKT  241 (337)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTT------HHHHHHHHHHTTCC-TTCCCGGGCC
T ss_pred             CcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCccc------HHHHHHHHHHCCCC-CCCcCCCCCC
Confidence            379999999999999999996 478999999999999999665543332      35688999999988 5778999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHh-hhcCCch----------hhhcCchhHHHHHhhc-cCCCCCcHhHHHHHcCCHHHHHHHH
Q 048100           81 PLHVAARYGHAAVVGALIEF-AEKQPGQ----------ELESGVKSTTRYMLGM-KNDEEDTALHEAVQSGSLDVVEILL  148 (161)
Q Consensus        81 ~l~~a~~~~~~~~~~~Ll~~-g~~~~~~----------~~~~~~~~~~~~l~~~-~~~~g~t~l~~a~~~~~~~~~~~Ll  148 (161)
                      |||+|+..|+.+++++|++. |++.+..          +...|+.+++++|++. -|.+..+|||+|+..|+.++|++|+
T Consensus       242 ~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~~~L~~A~~~~~~~iv~~Ll  321 (337)
T 4g8k_A          242 PLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDLVMTARRNYDHSLVKVLL  321 (337)
T ss_dssp             HHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999985 5664433          4566667778888754 3556778888888888888888888


Q ss_pred             hCCCCCCCC
Q 048100          149 GADPAFPYS  157 (161)
Q Consensus       149 ~~~~~~~~~  157 (161)
                      ++|+++++.
T Consensus       322 ~~GA~~d~~  330 (337)
T 4g8k_A          322 SHGAKEDFH  330 (337)
T ss_dssp             HTTCCC---
T ss_pred             HCcCCCCCC
Confidence            888887754

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.93  E-value=5.1e-25  Score=147.80  Aligned_cols=119  Identities=23%  Similarity=0.294  Sum_probs=100.2

Q ss_pred             cCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCch---
Q 048100           31 IHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQ---  107 (161)
Q Consensus        31 ~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~---  107 (161)
                      +..+.||||+|   +..|       ..+.++.|+..+...++..+..|+||||+|+..|+.+++++|++.|++.+..   
T Consensus         2 ~~~~~~~L~~A---~~~g-------~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~   71 (201)
T 3hra_A            2 KTYEVGALLEA---ANQR-------DTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSI   71 (201)
T ss_dssp             -CCCTTHHHHH---HHTT-------CHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CcccccHHHHH---HHhc-------cHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC
Confidence            35789999995   4555       4889999999887557888999999999999999999999999999987654   


Q ss_pred             -------hhhcCchhHHHHHh-------hccCCCCCcHhHHHHHcCCHHHHHHHHhCC-CCCCCCcC
Q 048100          108 -------ELESGVKSTTRYML-------GMKNDEEDTALHEAVQSGSLDVVEILLGAD-PAFPYSAN  159 (161)
Q Consensus       108 -------~~~~~~~~~~~~l~-------~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~  159 (161)
                             +...|+.+++++++       +..+..|.||||+|+..|+.+++++|++.| ++++.++.
T Consensus        72 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  138 (201)
T 3hra_A           72 SDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQND  138 (201)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCC
Confidence                   45677778888887       457788999999999999999999999988 77776543

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.93  E-value=2.3e-25  Score=144.10  Aligned_cols=108  Identities=19%  Similarity=0.188  Sum_probs=91.5

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      .||||. +..|+.+.++.|++.+..++..|..|.||||+|   +..|       +.+++++|++.|++ ++..+..|+||
T Consensus        37 ~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A---~~~~-------~~~~v~~Ll~~g~~-~~~~~~~g~t~  104 (156)
T 1bd8_A           37 KTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDA---ARTG-------FLDTLKVLVEHGAD-VNVPDGTGALP  104 (156)
T ss_dssp             CCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH---HHTT-------CHHHHHHHHHTTCC-SCCCCTTSCCH
T ss_pred             CcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH---HHcC-------cHHHHHHHHHcCCC-CCCcCCCCCcH
Confidence            589999 999999999999999999999999999999995   4445       48999999999987 57789999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCch----------hhhcCchhHHHHHhh
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQ----------ELESGVKSTTRYMLG  122 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~----------~~~~~~~~~~~~l~~  122 (161)
                      ||+|+..|+.+++++|++. ++....          +...|+.+++++|++
T Consensus       105 L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A          105 IHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             HHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            9999999999999999988 665444          345566667777654

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=1.6e-26  Score=146.64  Aligned_cols=124  Identities=21%  Similarity=0.178  Sum_probs=108.6

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      .||||.|+..|+.+.+++|++.+..++..|..|.||||+|   +..+       ..+++++|++.+++ ++..+..|.||
T Consensus        11 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A---~~~~-------~~~~~~~Ll~~g~~-~~~~~~~g~t~   79 (137)
T 3c5r_A           11 ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEA---CNHG-------HLKVVELLLQHKAL-VNTTGYQNDSP   79 (137)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHH---HHTT-------CHHHHHHHHHTTCC-TTCCCGGGCCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHH---HHcC-------CHHHHHHHHHcCCc-ccCcCCCCCCH
Confidence            5899999999999999999999999999999999999995   4444       48999999999987 57789999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCC
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPA  153 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~  153 (161)
                      ||+|+..++.+++++|++.|++                 ++.+|..|.||+++|+..+..+++++|.+.+..
T Consensus        80 L~~A~~~~~~~~v~~Ll~~ga~-----------------~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~s  134 (137)
T 3c5r_A           80 LHDAAKNGHVDIVKLLLSYGAS-----------------RNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS  134 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC-----------------TTCCCTTSCCGGGGCCCHHHHHHHSCC------
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC-----------------CCCCCCCCCCHHHHHhhccHHHHHhhccccccC
Confidence            9999999999999999999998                 788899999999999999999999888765543

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.93  E-value=7.8e-26  Score=156.08  Aligned_cols=129  Identities=16%  Similarity=0.139  Sum_probs=89.6

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      .|||+.|++.|+.+.++.|++.+...+. +..|.||||+|   +..|       ..+++++|++.+++ ++..|..|.||
T Consensus         6 ~t~L~~a~~~~~~~~~~~ll~~g~~~~~-~~~~~t~L~~A---~~~g-------~~~~v~~Ll~~g~~-~~~~d~~g~t~   73 (239)
T 1ycs_B            6 QVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDS---SLEG-------EFDLVQRIIYEVDD-PSLPNDEGITA   73 (239)
T ss_dssp             --------------------------------CHHHHHHH---HHHT-------CHHHHHHHTSTTSS-CCCCCTTSCCH
T ss_pred             cccCchhhhhhhHHHHHHHhccCCCccc-CchhhHHHHHH---HHcC-------CHHHHHHHHHcCCC-CCCcCCCCCCH
Confidence            4899999999999999999999988874 47899999995   4455       48999999999986 57789999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCcC
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                      ||+|+..|+.+++++|+++|++                 ++.+|..|+||||+|+..|+.+++++|+++|++++..++
T Consensus        74 L~~A~~~g~~~~v~~Ll~~ga~-----------------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~  134 (239)
T 1ycs_B           74 LHNAVCAGHTEIVKFLVQFGVN-----------------VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTY  134 (239)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCC-----------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCS
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC-----------------CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecC
Confidence            9999999999999999999998                 788899999999999999999999999999999987664

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.93  E-value=6.2e-26  Score=141.50  Aligned_cols=111  Identities=14%  Similarity=0.148  Sum_probs=100.1

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      +|+||.|+..|+++.++.|++.+..++..|..|.||||+|   +..+       ..+++++|++.+++ ++..|..|+||
T Consensus         8 ~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A---~~~~-------~~~~v~~Ll~~g~~-~~~~d~~g~tp   76 (123)
T 3aaa_C            8 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYA---ADCG-------QLEILEFLLLKGAD-INAPDKHHITP   76 (123)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHH---HHTT-------CHHHHHHHHTTTCC-TTCCCTTSCCH
T ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHH---HHcC-------CHHHHHHHHHcCCC-CCcCCCCCCCH
Confidence            4899999999999999999999999999999999999994   4555       48999999999987 57789999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCC
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGS  140 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~  140 (161)
                      ||+|+..++.+++++|+++|++                 ++.+|..|.||+|+|...+.
T Consensus        77 L~~A~~~~~~~~v~~Ll~~ga~-----------------~~~~~~~g~t~l~~A~~~~~  118 (123)
T 3aaa_C           77 LLSAVYEGHVSCVKLLLSKGAD-----------------KTVKGPDGLTAFEATDNQAI  118 (123)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCC-----------------TTCCCTTSCCHHHHCCCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC-----------------CCCcCCCCCCHHHHhCCHHH
Confidence            9999999999999999999998                 77889999999999944333

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.93  E-value=1.6e-24  Score=151.94  Aligned_cols=143  Identities=17%  Similarity=0.191  Sum_probs=76.6

Q ss_pred             hHHHHHHHcCChHHHHHHHhhhCccccc-cCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            3 SDLYEAAAKGVIEPFNQLAIDRQLGSLV-IHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~-~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      |+|+.|++.|+++.+++|++.+..++.. +..|.||||+|   +..|       +.+++++|++.|++ ++..+..|.||
T Consensus         7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A---~~~g-------~~~~v~~Ll~~g~~-~~~~~~~g~t~   75 (285)
T 1wdy_A            7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNA---VQMS-------REDIVELLLRHGAD-PVLRKKNGATP   75 (285)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHH---HHTT-------CHHHHHHHHHTTCC-TTCCCTTCCCH
T ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHH---HHcC-------CHHHHHHHHHcCCC-CcccCCCCCCH
Confidence            5566666666666666666655555544 45566666663   2333       25566666665554 34445556666


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCch----------hhhcCchhHHHHHhhc------c----------CCCCCcHhHHH
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQ----------ELESGVKSTTRYMLGM------K----------NDEEDTALHEA  135 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~----------~~~~~~~~~~~~l~~~------~----------~~~g~t~l~~a  135 (161)
                      ||+|+..|+.+++++|++.|++....          +...|+.++++++++.      .          +..|.||||+|
T Consensus        76 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A  155 (285)
T 1wdy_A           76 FLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA  155 (285)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHH
Confidence            66666666666666666655554322          2334444455555421      1          34455555555


Q ss_pred             HHcCCHHHHHHHHhC-CCCCCC
Q 048100          136 VQSGSLDVVEILLGA-DPAFPY  156 (161)
Q Consensus       136 ~~~~~~~~~~~Ll~~-~~~~~~  156 (161)
                      +..|+.+++++|++. |++++.
T Consensus       156 ~~~~~~~~v~~Ll~~~~~~~~~  177 (285)
T 1wdy_A          156 AEKGHVEVLKILLDEMGADVNA  177 (285)
T ss_dssp             HHHTCHHHHHHHHHTSCCCTTC
T ss_pred             HHcCCHHHHHHHHHhcCCCCCc
Confidence            555555555555543 555443

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.93  E-value=4.6e-25  Score=161.24  Aligned_cols=148  Identities=16%  Similarity=0.188  Sum_probs=124.9

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCc--cchhccCCCCC
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCP--SLLLQVNAKGD   79 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~--~~~~~~~~~~~   79 (161)
                      .||||.|+..|+.+++++|++.+..++..+..|.||||+|   +..|       ..+++++|++.+.  ..++..+..|.
T Consensus       167 ~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A---~~~g-------~~~~v~~Ll~~~~~~~~~~~~d~~g~  236 (373)
T 2fo1_E          167 NTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQA---AANR-------DFGMMVYMLNSTKLKGDIEELDRNGM  236 (373)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHH---HHTT-------CHHHHHHHTTSHHHHHTTSCCCTTSC
T ss_pred             CCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHH---HHCC-------CHHHHHHHHhcCccccChhhcCCCCC
Confidence            5899999999999999999999999999999999999995   4444       4889999998762  22566788999


Q ss_pred             cHHHHHHHhC---CHHHHHHHHHhhhcCCch------------------hhhcCchhHHHHHhh-------ccCCCCCcH
Q 048100           80 SPLHVAARYG---HAAVVGALIEFAEKQPGQ------------------ELESGVKSTTRYMLG-------MKNDEEDTA  131 (161)
Q Consensus        80 t~l~~a~~~~---~~~~~~~Ll~~g~~~~~~------------------~~~~~~~~~~~~l~~-------~~~~~g~t~  131 (161)
                      ||||+|+..+   +.+++++|++.|++....                  +...|+.+++++|+.       .+|..|+||
T Consensus       237 t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~Tp  316 (373)
T 2fo1_E          237 TALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTP  316 (373)
T ss_dssp             CHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCH
T ss_pred             CHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCH
Confidence            9999999888   789999999999886531                  466777788888873       567899999


Q ss_pred             hHHHHHcCCHHHHHHHHhCCCCCCCCcC
Q 048100          132 LHEAVQSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       132 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                      ||+|+..|+.+++++|+++|++++.++.
T Consensus       317 L~~A~~~g~~~iv~~Ll~~gad~~~~d~  344 (373)
T 2fo1_E          317 IMLAAQEGRIEVVMYLIQQGASVEAVDA  344 (373)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSSCCCS
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCccCCCC
Confidence            9999999999999999999999887654

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.93  E-value=4.3e-25  Score=154.82  Aligned_cols=133  Identities=19%  Similarity=0.201  Sum_probs=118.2

Q ss_pred             ChHHHHHHHcCChHHHHHHHhh-hCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCc
Q 048100            2 NSDLYEAAAKGVIEPFNQLAID-RQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDS   80 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t   80 (161)
                      .||||.|+..|+.+.+++|++. +..++..+..|.||||+|+   ..++..   ...+++++|++.|.+ ++..+..|.|
T Consensus       149 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~---~~~~~~---~~~~i~~~Ll~~g~~-~~~~~~~g~t  221 (285)
T 1wdy_A          149 ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHAL---LSSDDS---DVEAITHLLLDHGAD-VNVRGERGKT  221 (285)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHH---HCSCTT---THHHHHHHHHHTTCC-SSCCCTTSCC
T ss_pred             CcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHH---Hccccc---hHHHHHHHHHHcCCC-CCCcCCCCCc
Confidence            3899999999999999999987 8889999999999999954   333211   137899999999987 5778999999


Q ss_pred             HHHHHHHhCCHHHHHHHHH-hhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCc
Q 048100           81 PLHVAARYGHAAVVGALIE-FAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSA  158 (161)
Q Consensus        81 ~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  158 (161)
                      |||+|+..|+.+++++|++ .|++                 ++.+|..|+||||+|+..|+.+++++|+++|++++.++
T Consensus       222 ~L~~A~~~~~~~~v~~Ll~~~g~~-----------------~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d  283 (285)
T 1wdy_A          222 PLILAVEKKHLGLVQRLLEQEHIE-----------------INDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSSSCC-----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred             HHHHHHHcCCHHHHHHHHhccCCC-----------------ccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCccc
Confidence            9999999999999999999 7887                 77889999999999999999999999999999998765

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.93  E-value=6.5e-25  Score=152.55  Aligned_cols=134  Identities=16%  Similarity=0.145  Sum_probs=110.5

Q ss_pred             ChHHHHHHHcCChH----HHHHHHhhhCcccc----ccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchh-
Q 048100            2 NSDLYEAAAKGVIE----PFNQLAIDRQLGSL----VIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLL-   72 (161)
Q Consensus         2 ~~~l~~A~~~g~~~----~v~~ll~~~~~~~~----~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~-   72 (161)
                      .||||.|++.|+.+    .+++|+..+..++.    .|..|.||||+|+.....|       ..+++++|++.|++... 
T Consensus         3 ~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g-------~~~~v~~Ll~~g~~~~~~   75 (256)
T 2etb_A            3 RDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDG-------VNACIMPLLQIDKDSGNP   75 (256)
T ss_dssp             HHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTT-------BCTTHHHHHHHHHHTTCS
T ss_pred             ccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccc-------hHHHHHHHHhcCCcccch
Confidence            38999999999998    45666678888887    8999999999955431114       47899999998876421 


Q ss_pred             ---------ccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCC-------------CCc
Q 048100           73 ---------QVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDE-------------EDT  130 (161)
Q Consensus        73 ---------~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~-------------g~t  130 (161)
                               ..+..|.||||+|+..|+.+++++|++.|++                 ++.++..             |.|
T Consensus        76 ~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-----------------~~~~~~~~~~~~~~~~~~~~g~t  138 (256)
T 2etb_A           76 KPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD-----------------VHLRACGRFFQKHQGTCFYFGEL  138 (256)
T ss_dssp             SCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-----------------TTCCCCSGGGSCCSSSCCCSCSS
T ss_pred             hhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCC-----------------CCcccccccccccccccccCCCC
Confidence                     1246799999999999999999999999998                 5555554             999


Q ss_pred             HhHHHHHcCCHHHHHHHHh---CCCCCCCCcC
Q 048100          131 ALHEAVQSGSLDVVEILLG---ADPAFPYSAN  159 (161)
Q Consensus       131 ~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~  159 (161)
                      |||+|+..|+.+++++|++   .|++++.++.
T Consensus       139 pL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~  170 (256)
T 2etb_A          139 PLSLAACTKQWDVVTYLLENPHQPASLEATDS  170 (256)
T ss_dssp             HHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCT
T ss_pred             HHHHHHHcCCHHHHHHHHhccccCCCcCccCC
Confidence            9999999999999999999   9999987654

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.93  E-value=2.6e-25  Score=158.43  Aligned_cols=127  Identities=20%  Similarity=0.219  Sum_probs=113.2

Q ss_pred             hHHHHHHHcCChHHHHHHHhhhCcccc------ccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCC
Q 048100            3 SDLYEAAAKGVIEPFNQLAIDRQLGSL------VIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNA   76 (161)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~------~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~   76 (161)
                      ++|+.|+..|+++.++.|+..+.+++.      .+..|.||||+|+..+..+       ..+++++|++.|++ ++..|.
T Consensus       153 ~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~-------~~~iv~~Ll~~gad-vn~~d~  224 (301)
T 2b0o_E          153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQA-------SLPLVDFIIQNGGH-LDAKAA  224 (301)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTT-------THHHHHHHHHHSSC-TTCCCT
T ss_pred             HHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccC-------cHHHHHHHHhcCCC-CCCCCC
Confidence            569999999999999999999888877      6889999999965432123       48999999999987 577899


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCC
Q 048100           77 KGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAF  154 (161)
Q Consensus        77 ~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~  154 (161)
                      .|+||||+|+..|+.+++++|+++|++                 ++.+|..|.||||+|+..|+.+++++|+++|++.
T Consensus       225 ~G~TpLh~A~~~g~~~~v~~Ll~~gad-----------------~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~~  285 (301)
T 2b0o_E          225 DGNTALHYAALYNQPDCLKLLLKGRAL-----------------VGTVNEAGETALDIARKKHHKECEELLEQAQAGT  285 (301)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCC-----------------CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC-----------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCC
Confidence            999999999999999999999999998                 7788999999999999999999999999887763

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.93  E-value=1.9e-26  Score=153.79  Aligned_cols=135  Identities=10%  Similarity=-0.008  Sum_probs=85.6

Q ss_pred             hHHHHHHHcCCh----HHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCC
Q 048100            3 SDLYEAAAKGVI----EPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKG   78 (161)
Q Consensus         3 ~~l~~A~~~g~~----~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~   78 (161)
                      ||||.|+..|+.    +++++|++.+.+++.+|..|.||||+|+..   ++.. .....+++++|+++|++ ++.+|..|
T Consensus        40 T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~---~~~~-~~~~~~iv~~Ll~~Gad-in~~d~~g  114 (186)
T 3t8k_A           40 NILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQG---GGND-ITGTTELCKIFLEKGAD-ITALYKPY  114 (186)
T ss_dssp             THHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHH---CTTC-HHHHHHHHHHHHHTTCC-SSSCBGGG
T ss_pred             CHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc---CCcc-hhhHHHHHHHHHHCCCC-CCccCCCc
Confidence            566666666653    356666666666666666666666664322   2100 00124566666666665 35556666


Q ss_pred             C-cHHHHHHHhC-----CHHHHHHHHH-hhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCC
Q 048100           79 D-SPLHVAARYG-----HAAVVGALIE-FAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGAD  151 (161)
Q Consensus        79 ~-t~l~~a~~~~-----~~~~~~~Ll~-~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  151 (161)
                      . ||||+|+..+     ..+++++|++ +|++                 ++.+|..|+||||+|++.|+.+++++|.++.
T Consensus       115 ~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad-----------------~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~  177 (186)
T 3t8k_A          115 KIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ-----------------LLIKDKWGLTALEFVKRCQKPIALKMMEDYI  177 (186)
T ss_dssp             TBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC-----------------TTCCCTTSCCHHHHHHTTTCHHHHHHHHHHH
T ss_pred             CchHHHHHHHcCCChhhHHHHHHHHHHhcCCC-----------------CcccCCCCCCHHHHHHHcCCHHHHHHHHHHH
Confidence            6 6666666632     2346666666 6666                 6778999999999999999999999999766


Q ss_pred             CCCCCCcC
Q 048100          152 PAFPYSAN  159 (161)
Q Consensus       152 ~~~~~~~~  159 (161)
                      .+.+..+|
T Consensus       178 ~~~~~~~~  185 (186)
T 3t8k_A          178 KKYNLKEN  185 (186)
T ss_dssp             HHHTCCC-
T ss_pred             HHHhcccC
Confidence            55554443

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.93  E-value=4.9e-25  Score=151.50  Aligned_cols=125  Identities=14%  Similarity=0.175  Sum_probs=102.8

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCc------cccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccC
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQL------GSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVN   75 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~------~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~   75 (161)
                      .||||.|+..|+.+.++.|++.+..      .+..+..|.||||+|   +..+       ..+++++|++.|++ ++..+
T Consensus        79 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A---~~~~-------~~~~v~~Ll~~g~~-~~~~~  147 (236)
T 1ikn_D           79 NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA---SIHG-------YLGIVELLVSLGAD-VNAQE  147 (236)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHH---HHTT-------CHHHHHHHHHHTCC-TTCCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHH---HHcC-------CHHHHHHHHHcCCC-CCCCC
Confidence            5899999999999999999987654      466788899999995   4555       48999999999988 45666


Q ss_pred             C-CCCcHHHHHHHhCCHHHHHHHHHhhhcCCch----------hhhcCchhHHHHHhh--------ccCCCCCcHhHHHH
Q 048100           76 A-KGDSPLHVAARYGHAAVVGALIEFAEKQPGQ----------ELESGVKSTTRYMLG--------MKNDEEDTALHEAV  136 (161)
Q Consensus        76 ~-~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~----------~~~~~~~~~~~~l~~--------~~~~~g~t~l~~a~  136 (161)
                      . .|.||||+|+..|+.+++++|+++|++....          +...++.+++++|+.        .++..|.||...+.
T Consensus       148 ~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~  227 (236)
T 1ikn_D          148 PCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTES  227 (236)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC-
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhc
Confidence            6 9999999999999999999999999987655          456777888999873        56778888876544


Q ss_pred             H
Q 048100          137 Q  137 (161)
Q Consensus       137 ~  137 (161)
                      .
T Consensus       228 ~  228 (236)
T 1ikn_D          228 E  228 (236)
T ss_dssp             -
T ss_pred             c
Confidence            3

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.93  E-value=1.5e-24  Score=156.26  Aligned_cols=129  Identities=24%  Similarity=0.281  Sum_probs=116.4

Q ss_pred             ChHHHHHHHcCChHHHHHHHhh-hCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCc
Q 048100            2 NSDLYEAAAKGVIEPFNQLAID-RQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDS   80 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t   80 (161)
                      .++|+.|++.|+.+.++.++.. +...+..|..|.||||+|   +..|       +.+++++|++.|++ ++..+..|.|
T Consensus        25 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A---~~~g-------~~~~v~~Ll~~g~~-~~~~~~~g~t   93 (351)
T 3utm_A           25 KDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLA---AGYN-------RVRIVQLLLQHGAD-VHAKDKGGLV   93 (351)
T ss_dssp             HHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHH---HHTT-------CHHHHHHHHHTTCC-TTCCCTTCCC
T ss_pred             chhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHH---HHcC-------CHHHHHHHHHcCCC-CCccCCCCCc
Confidence            4789999999999999999865 677788999999999995   4555       48999999999987 5778999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCc
Q 048100           81 PLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSA  158 (161)
Q Consensus        81 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  158 (161)
                      |||+|+..|+.+++++|+++|++                 ++..|..|.||||+|+..|+.+++++|+++|++++..+
T Consensus        94 ~L~~A~~~g~~~iv~~Ll~~g~~-----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  154 (351)
T 3utm_A           94 PLHNACSYGHYEVTELLLKHGAC-----------------VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVN  154 (351)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCC-----------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHHHHCCCHHHHHHHHHCCCC-----------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccc
Confidence            99999999999999999999988                 77789999999999999999999999999999987654

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.93  E-value=3.4e-25  Score=161.13  Aligned_cols=126  Identities=20%  Similarity=0.207  Sum_probs=115.5

Q ss_pred             ChHHHHHHHcC--ChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccc----hhccC
Q 048100            2 NSDLYEAAAKG--VIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSL----LLQVN   75 (161)
Q Consensus         2 ~~~l~~A~~~g--~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~----~~~~~   75 (161)
                      .||||.|+..|  +.+.++.|++.+.+++..|..|.||||+|   +..|       +.+++++|++.+++.    ++..+
T Consensus       139 ~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A---~~~g-------~~~~v~~Ll~~g~~~~~~~~~~~~  208 (364)
T 3ljn_A          139 QTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRA---MEFR-------NREALDLMMDTVPSKSSLRLDYAN  208 (364)
T ss_dssp             CCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHH---HHTT-------CHHHHHHHHHHCSCSSSCCTTCCC
T ss_pred             CCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHH---HHcC-------CHHHHHHHHhcccccccccccccC
Confidence            58999999999  99999999999999999999999999994   4555       489999999998762    46778


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCC
Q 048100           76 AKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAF  154 (161)
Q Consensus        76 ~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~  154 (161)
                      ..|+||||+|+..|+.+++++|+++|++                 ++.+|..|.||||+|+..|+.+++++|+++|+++
T Consensus       209 ~~g~t~L~~A~~~g~~~~v~~Ll~~gad-----------------~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~  270 (364)
T 3ljn_A          209 KQGNSHLHWAILINWEDVAMRFVEMGID-----------------VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVF  270 (364)
T ss_dssp             TTCCCTTHHHHTTTCHHHHHHHHTTTCC-----------------TTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCC-----------------CCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCch
Confidence            9999999999999999999999999998                 7888999999999999999999999999988764

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.93  E-value=1.1e-24  Score=153.60  Aligned_cols=127  Identities=19%  Similarity=0.148  Sum_probs=111.5

Q ss_pred             hHHHHHHHcCChHHHHHHHhhhCcc------ccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCC
Q 048100            3 SDLYEAAAKGVIEPFNQLAIDRQLG------SLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNA   76 (161)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~------~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~   76 (161)
                      ++|+.|+..|+++.++.++..+...      +..+..|.||||+|+..+..+       ..+++++|+++|++ ++..|.
T Consensus       132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~-------~~~~v~~Ll~~ga~-in~~d~  203 (278)
T 1dcq_A          132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRT-------SLHIVDFLVQNSGN-LDKQTG  203 (278)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTT-------THHHHHHHHHHCSC-TTCCCT
T ss_pred             hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccc-------hHHHHHHHHHCCCC-ccccCC
Confidence            5789999999999999999888774      334788999999965432113       48999999999988 578899


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCC
Q 048100           77 KGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAF  154 (161)
Q Consensus        77 ~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~  154 (161)
                      .|+||||+|+..|+.+++++|+++|++                 ++.+|..|.||||+|+..|+.+++++|+++|++.
T Consensus       204 ~g~TpLh~A~~~g~~~~v~~Ll~~gad-----------------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          204 KGSTALHYCCLTDNAECLKLLLRGKAS-----------------IEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCC-----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC-----------------CCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            999999999999999999999999998                 8889999999999999999999999999887753

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.93  E-value=2.4e-24  Score=147.66  Aligned_cols=147  Identities=18%  Similarity=0.200  Sum_probs=119.0

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      .++|+.|++.|+++.+++|++.+...+..+..|.||||+|   +..|       +.+++++|++.++++....+..|.||
T Consensus        10 ~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A---~~~~-------~~~~v~~Ll~~~~~~~~~~~~~~~t~   79 (240)
T 3eu9_A           10 TWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWA---AINN-------RIDLVKYYISKGAIVDQLGGDLNSTP   79 (240)
T ss_dssp             GCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH---HHTT-------CHHHHHHHHHTTCCTTCCBTTTTBCH
T ss_pred             chHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHH---HHhC-------CHHHHHHHHHcCCcchhhcCCcCCCh
Confidence            4789999999999999999999999999999999999995   4455       48999999999988666667779999


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCch----------hhhcCchhHHHHHh------hccCCCCCcHhHHHHHcCC-HHHH
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQ----------ELESGVKSTTRYML------GMKNDEEDTALHEAVQSGS-LDVV  144 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~----------~~~~~~~~~~~~l~------~~~~~~g~t~l~~a~~~~~-~~~~  144 (161)
                      ||+|+..|+.+++++|++.|++....          +...|+.+++++|+      +.++..|.||||+|+..++ .+++
T Consensus        80 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  159 (240)
T 3eu9_A           80 LHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPT  159 (240)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTH
T ss_pred             hHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHH
Confidence            99999999999999999999885443          34556666777765      3466677777777775554 6777


Q ss_pred             HHHHhCCCCCCCCc
Q 048100          145 EILLGADPAFPYSA  158 (161)
Q Consensus       145 ~~Ll~~~~~~~~~~  158 (161)
                      ++|++.|++++..+
T Consensus       160 ~~L~~~~~~~~~~~  173 (240)
T 3eu9_A          160 RLLLTFNVSVNLGD  173 (240)
T ss_dssp             HHHHHTTCCTTCCC
T ss_pred             HHHHhcCCCcchhh
Confidence            77777777776554

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.92  E-value=2.3e-24  Score=155.23  Aligned_cols=140  Identities=19%  Similarity=0.134  Sum_probs=99.9

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccC-CCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccc----------
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIH-KKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSL----------   70 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~-~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~----------   70 (161)
                      +|+|+.|++.|+++.|+.|++.+.+++.++. .|.||||+|   +..|       +.+++++|+++|+++          
T Consensus        26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A---~~~g-------~~~iv~~Ll~~ga~~~~~~~~~~~~   95 (337)
T 4g8k_A           26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNA---VQMS-------REDIVELLLRHGADPVLRKKNGATP   95 (337)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHH---HHTT-------CHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             ChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHH---HHcC-------CHHHHHHHHHcCCchhhhccCCCch
Confidence            4789999999999999999999999998876 599999995   4555       489999999988753          


Q ss_pred             ----------------------hhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCC
Q 048100           71 ----------------------LLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEE  128 (161)
Q Consensus        71 ----------------------~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g  128 (161)
                                            ++..+..|.||+|+|+..|+.+++++|++.|++...... ..      ......+..|
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~-~~------~~~~~~~~~g  168 (337)
T 4g8k_A           96 FILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK-TK------EDQERLRKGG  168 (337)
T ss_dssp             HHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCC-CC-----------CTTCS
T ss_pred             hHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhc-cc------cccccccCCC
Confidence                                  233467788888888888888888888888877443200 00      0012234556


Q ss_pred             CcHhHHHHHcCCHHHHHHHHh-CCCCCCCCc
Q 048100          129 DTALHEAVQSGSLDVVEILLG-ADPAFPYSA  158 (161)
Q Consensus       129 ~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~  158 (161)
                      .||||+|+..|+.+++++|++ .|++++.++
T Consensus       169 ~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d  199 (337)
T 4g8k_A          169 ATALMDAAEKGHVEVLKILLDEMGADVNACD  199 (337)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHSCCCTTCCC
T ss_pred             CcHHHHHHHCCCHHHHHHHHhccCCCcCccC
Confidence            666666666666666666663 466665443

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.92  E-value=2.1e-25  Score=155.33  Aligned_cols=134  Identities=13%  Similarity=0.151  Sum_probs=110.3

Q ss_pred             ChHHHHHHHcCChHHHHHHHh----hhCcccccc----CCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccc---
Q 048100            2 NSDLYEAAAKGVIEPFNQLAI----DRQLGSLVI----HKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSL---   70 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~----~~~~~~~~~----~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~---   70 (161)
                      .++||.|++.|+.+.++.|++    .+...+..+    ..|.||||+|+.++..|+       .+++++|++.+++.   
T Consensus         6 ~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~-------~~~v~~Ll~~g~~~~~~   78 (260)
T 3jxi_A            6 RPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGR-------NDTIPILLDIAEKTGNM   78 (260)
T ss_dssp             HHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTB-------CTHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCC-------HHHHHHHHHhcccccch
Confidence            378999999999997666554    777777665    679999999764435554       78999999987542   


Q ss_pred             -------hhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccC--------------CCCC
Q 048100           71 -------LLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKN--------------DEED  129 (161)
Q Consensus        71 -------~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~--------------~~g~  129 (161)
                             ....+..|+||||+|+..|+.+++++|++.|++                 ++.++              ..|+
T Consensus        79 ~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-----------------~~~~~~~~~~~~~~~~~~~~~g~  141 (260)
T 3jxi_A           79 REFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD-----------------VHAQARGRFFQPKDEGGYFYFGE  141 (260)
T ss_dssp             HHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC-----------------TTCCCEECCCSSSCCCCSCCSCS
T ss_pred             HhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC-----------------cCccccccccCcccccccccCCC
Confidence                   123355899999999999999999999999998                 55555              6899


Q ss_pred             cHhHHHHHcCCHHHHHHHHh---CCCCCCCCcC
Q 048100          130 TALHEAVQSGSLDVVEILLG---ADPAFPYSAN  159 (161)
Q Consensus       130 t~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~  159 (161)
                      ||||+|+..|+.+++++|++   .|++++.++.
T Consensus       142 tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~  174 (260)
T 3jxi_A          142 LPLSLAACTNQPHIVHYLTENGHKQADLRRQDS  174 (260)
T ss_dssp             SHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCT
T ss_pred             CHHHHHHHcCCHHHHHHHHhccccCCCCcccCC
Confidence            99999999999999999999   9999987654

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.92  E-value=1.7e-24  Score=143.74  Aligned_cols=136  Identities=23%  Similarity=0.204  Sum_probs=101.7

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccC-CCCCc
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVN-AKGDS   80 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~-~~~~t   80 (161)
                      .||||.|+..|+.+.++.|++ +..++..|..|.||||+|+   ..|       +.+++++|++.|+++ +..+ ..|+|
T Consensus        45 ~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~---~~~-------~~~~v~~Ll~~ga~~-~~~~~~~g~t  112 (183)
T 3deo_A           45 ETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVA---GLG-------SDKCVRLLAEAGADL-DHRDMRGGLT  112 (183)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHH---HHT-------CHHHHHHHHHTTCCT-TCCCSSSSCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHH---HcC-------CHHHHHHHHHcCCCC-CcCCCCCCCC
Confidence            489999999999999999998 8889999999999999954   445       489999999999884 5555 89999


Q ss_pred             HHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhC
Q 048100           81 PLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGA  150 (161)
Q Consensus        81 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  150 (161)
                      |||+|+..|+.+++++|+++|++.... +..|..++.-.........+.+++++|+..|+.+++++|.+.
T Consensus       113 pL~~A~~~~~~~~v~~Ll~~ga~~~~~-d~~g~tpl~~A~~~~~~~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          113 ALHMAAGYVRPEVVEALVELGADIEVE-DERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCCTTCC-CTTSCCHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhcCcHHHHHHHHHcCCCCcCC-CCCCCCHHHHHHHhccCcccccHHHHHHHcCHHHHHHHHHHh
Confidence            999999999999999999999984333 233333322111112223334444444555778888887653

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.92  E-value=1.1e-23  Score=144.42  Aligned_cols=147  Identities=21%  Similarity=0.214  Sum_probs=117.8

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCcccccc-CCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCc
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVI-HKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDS   80 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t   80 (161)
                      .||||.|+..|+.+.+++|++.+...+..+ ..|.||||+|+   ..+       ..+++++|++.+++ ++..+..|.|
T Consensus        43 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~---~~~-------~~~~v~~Ll~~g~~-~~~~~~~g~t  111 (240)
T 3eu9_A           43 VTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWAT---RQG-------HLSMVVQLMKYGAD-PSLIDGEGCS  111 (240)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHH---HHT-------CHHHHHHHHHTTCC-TTCCCTTSCC
T ss_pred             CCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHH---HcC-------CHHHHHHHHHcCCC-CcccCCCCCC
Confidence            479999999999999999999888776544 45999999954   444       48899999999887 4677899999


Q ss_pred             HHHHHHHhCCHHHHHHHHHhhhcCCch----------hhhcCc-hhHHHHHh------hccCC-CCCcHhHHHHHcCCHH
Q 048100           81 PLHVAARYGHAAVVGALIEFAEKQPGQ----------ELESGV-KSTTRYML------GMKND-EEDTALHEAVQSGSLD  142 (161)
Q Consensus        81 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~----------~~~~~~-~~~~~~l~------~~~~~-~g~t~l~~a~~~~~~~  142 (161)
                      |||+|+..|+.+++++|++.|++....          +...+. ..+.++++      +..+. .|.||||+|+..|+.+
T Consensus       112 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  191 (240)
T 3eu9_A          112 CIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTT  191 (240)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHH
T ss_pred             HHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHH
Confidence            999999999999999999999886554          121222 44566664      34554 8899999999999999


Q ss_pred             HHHHHHhCCCCCCCCcC
Q 048100          143 VVEILLGADPAFPYSAN  159 (161)
Q Consensus       143 ~~~~Ll~~~~~~~~~~~  159 (161)
                      ++++|++.|++++..+.
T Consensus       192 ~v~~Ll~~g~~~~~~~~  208 (240)
T 3eu9_A          192 VISLLLEAGANVDAQNI  208 (240)
T ss_dssp             HHHHHHHHTCCTTCBCT
T ss_pred             HHHHHHHcCCCCCCcCC
Confidence            99999999998876543

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.91  E-value=1.5e-24  Score=152.11  Aligned_cols=126  Identities=18%  Similarity=0.215  Sum_probs=109.1

Q ss_pred             ChHHHHHHHc---CChHHHHHHHhhhCcc-------c----cccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhC
Q 048100            2 NSDLYEAAAK---GVIEPFNQLAIDRQLG-------S----LVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETC   67 (161)
Q Consensus         2 ~~~l~~A~~~---g~~~~v~~ll~~~~~~-------~----~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~   67 (161)
                      .||||.|+..   |+.+.++.|++.+...       +    ..|..|.||||+|   +..|       +.+++++|++.|
T Consensus        55 ~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A---~~~g-------~~~~v~~Ll~~g  124 (273)
T 2pnn_A           55 KTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIA---IERR-------NMTLVTLLVENG  124 (273)
T ss_dssp             CCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHH---HHTT-------CHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHH---HHcC-------CHHHHHHHHHCC
Confidence            5899999987   9999999999887542       2    2566899999995   4555       489999999999


Q ss_pred             ccchhccCC--------------CCCcHHHHHHHhCCHHHHHHHHH---hhhcCCchhhhcCchhHHHHHhhccCCCCCc
Q 048100           68 PSLLLQVNA--------------KGDSPLHVAARYGHAAVVGALIE---FAEKQPGQELESGVKSTTRYMLGMKNDEEDT  130 (161)
Q Consensus        68 ~~~~~~~~~--------------~~~t~l~~a~~~~~~~~~~~Ll~---~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t  130 (161)
                      ++ ++..+.              .|.||||+|+..|+.+++++|++   .|++                 ++.+|..|+|
T Consensus       125 a~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad-----------------~~~~d~~g~t  186 (273)
T 2pnn_A          125 AD-VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD-----------------ISARDSVGNT  186 (273)
T ss_dssp             CC-TTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC-----------------TTCCCTTSCC
T ss_pred             CC-cCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC-----------------ceeeCCCCCc
Confidence            88 455555              79999999999999999999999   8888                 7888999999


Q ss_pred             HhHHHHHcCC---------HHHHHHHHhCCCCCC
Q 048100          131 ALHEAVQSGS---------LDVVEILLGADPAFP  155 (161)
Q Consensus       131 ~l~~a~~~~~---------~~~~~~Ll~~~~~~~  155 (161)
                      |||+|+..|+         .+++++|+++|++++
T Consensus       187 pLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n  220 (273)
T 2pnn_A          187 VLHALVEVADNTVDNTKFVTSMYNEILILGAKLH  220 (273)
T ss_dssp             HHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcc
Confidence            9999999998         899999999988875

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.91  E-value=5.5e-24  Score=147.32  Aligned_cols=137  Identities=23%  Similarity=0.196  Sum_probs=112.7

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccC-CCCCc
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVN-AKGDS   80 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~-~~~~t   80 (161)
                      .||||.|++.|+.+.++.|++ +..++.+|..|.||||+|+   ..|       +.+++++|++.|+++ +..+ ..|+|
T Consensus        46 ~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~---~~g-------~~~~v~~Ll~~ga~~-~~~~~~~g~t  113 (244)
T 3ui2_A           46 ETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVA---GLG-------SDKCVRLLAEAGADL-DHRDMRGGLT  113 (244)
T ss_dssp             HHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHH---HHT-------CHHHHHHHHHTTCCT-TCCCSSSCCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHH---HCC-------CHHHHHHHHHcCCCC-CcCCCCCCCC
Confidence            489999999999999999998 8889999999999999954   445       489999999999984 4555 88999


Q ss_pred             HHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCC
Q 048100           81 PLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGAD  151 (161)
Q Consensus        81 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  151 (161)
                      |||+|+..|+.+++++|+++|++.+.. +..|..++.-.........+.|||++|+..|+.+++++|++.+
T Consensus       114 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~-d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~  183 (244)
T 3ui2_A          114 ALHMAAGYVRPEVVEALVELGADIEVE-DERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQV  183 (244)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHhc
Confidence            999999999999999999999986554 4555555443333344556677777777899999999999753

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.91  E-value=7.1e-24  Score=125.97  Aligned_cols=93  Identities=33%  Similarity=0.506  Sum_probs=83.7

Q ss_pred             CCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcC
Q 048100           33 KKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESG  112 (161)
Q Consensus        33 ~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~  112 (161)
                      .|.||||+|   +..+       ..+++++|++.+++ ++..+..|+||||+|+..++.+++++|++.|++         
T Consensus         1 ~g~t~L~~A---~~~~-------~~~~v~~Ll~~g~~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---------   60 (93)
T 1n0q_A            1 NGRTPLHLA---ARNG-------HLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD---------   60 (93)
T ss_dssp             --CCHHHHH---HHHT-------CHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---------
T ss_pred             CCCcHHHHH---HHcC-------CHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---------
Confidence            489999995   4445       48999999999987 578899999999999999999999999999998         


Q ss_pred             chhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCC
Q 048100          113 VKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPA  153 (161)
Q Consensus       113 ~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~  153 (161)
                              ++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus        61 --------~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           61 --------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             --------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             --------CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence                    788899999999999999999999999999975

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.91  E-value=4.4e-24  Score=155.66  Aligned_cols=123  Identities=20%  Similarity=0.264  Sum_probs=112.4

Q ss_pred             ChHHHHHHHc-CChHHHHHHHhhhCcccccc--CCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCC
Q 048100            2 NSDLYEAAAK-GVIEPFNQLAIDRQLGSLVI--HKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKG   78 (161)
Q Consensus         2 ~~~l~~A~~~-g~~~~v~~ll~~~~~~~~~~--~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~   78 (161)
                      +++||.|+.. |+++.++.|+..+.+++..+  ..|.||||+|   +..+       ..+++++|++.|++ ++..|..|
T Consensus       200 ~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~A---a~~g-------~~~iv~~LL~~Gad-vn~~d~~G  268 (368)
T 3jue_A          200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQA---TAAN-------SLLACEFLLQNGAN-VNQADSAG  268 (368)
T ss_dssp             HHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHH---HHTT-------CHHHHHHHHHTTCC-TTCCCTTS
T ss_pred             CcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHH---HHCC-------CHHHHHHHHHcCCC-CCCCCCCC
Confidence            3689999999 99999999999999999888  8999999995   4555       48999999999988 57889999


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCC
Q 048100           79 DSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADP  152 (161)
Q Consensus        79 ~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~  152 (161)
                      +||||+|+..|+.+++++|+++|++                 ++.+|..|.||||+|+..++.+++++|+.++.
T Consensus       269 ~TpLh~A~~~g~~~~v~~LL~~Gad-----------------~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~  325 (368)
T 3jue_A          269 RGPLHHATILGHTGLACLFLKRGAD-----------------LGARDSEGRDPLTIAMETANADIVTLLRLAKM  325 (368)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCC-----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC
T ss_pred             CCHHHHHHHcCcHHHHHHHHHCcCC-----------------CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            9999999999999999999999998                 78889999999999999999999999996653

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.91  E-value=1.4e-24  Score=144.64  Aligned_cols=132  Identities=11%  Similarity=0.065  Sum_probs=109.9

Q ss_pred             hHHHHHHHcCChHHHHHHHhhhCcccccc-CCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            3 SDLYEAAAKGVIEPFNQLAIDRQLGSLVI-HKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      ++|+.|++.|+++.++.++..+  .+..+ ..|.||||+   |+..++..   .+.+++++|+++|++ ++..+..|+||
T Consensus         8 ~~l~~Aa~~g~~~~~~~l~~~~--~~~~~~~~g~T~Lh~---A~~~~~~~---~~~~iv~~Ll~~Gad-vn~~d~~g~Tp   78 (186)
T 3t8k_A            8 RTVSAAAMLGTYEDFLELFEKG--YEDKESVLKSNILYD---VLRNNNDE---ARYKISMFLINKGAD-IKSRTKEGTTL   78 (186)
T ss_dssp             SSHHHHHHHSCHHHHHHHHHHS--SSCHHHHHTTTHHHH---HTTCSCHH---HHHHHHHHHHHTTCC-SSCCCTTCCCT
T ss_pred             cHHHHHHHcCCHHHHHHHHhcC--cccccccCCCCHHHH---HHHcCCcc---hHHHHHHHHHHCCCC-CCCCCCCCCcH
Confidence            6799999999999999998654  34455 789999999   44444311   135799999999998 57889999999


Q ss_pred             HHHHHHhCC------HHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCC-cHhHHHHHcC-----CHHHHHHHHh
Q 048100           82 LHVAARYGH------AAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEED-TALHEAVQSG-----SLDVVEILLG  149 (161)
Q Consensus        82 l~~a~~~~~------~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~-t~l~~a~~~~-----~~~~~~~Ll~  149 (161)
                      ||+|+..++      .+++++|+++|++                 ++.+|..|+ ||||+|+..+     +.+++++|++
T Consensus        79 Lh~a~~~~~~~~~~~~~iv~~Ll~~Gad-----------------in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~  141 (186)
T 3t8k_A           79 FFPLFQGGGNDITGTTELCKIFLEKGAD-----------------ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFS  141 (186)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCC-----------------SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCcchhhHHHHHHHHHHCCCC-----------------CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHH
Confidence            999999987      5789999999999                 888899999 9999999944     4679999999


Q ss_pred             -CCCCCCCCcCC
Q 048100          150 -ADPAFPYSANG  160 (161)
Q Consensus       150 -~~~~~~~~~~~  160 (161)
                       +|++++.+++.
T Consensus       142 ~~gad~~~~d~~  153 (186)
T 3t8k_A          142 QSGLQLLIKDKW  153 (186)
T ss_dssp             STTCCTTCCCTT
T ss_pred             hcCCCCcccCCC
Confidence             99999877653

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.91  E-value=9.9e-24  Score=154.19  Aligned_cols=126  Identities=19%  Similarity=0.172  Sum_probs=109.8

Q ss_pred             ChHHHHHHHcC---ChHHHHHHHhhhCcccc--------ccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccc
Q 048100            2 NSDLYEAAAKG---VIEPFNQLAIDRQLGSL--------VIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSL   70 (161)
Q Consensus         2 ~~~l~~A~~~g---~~~~v~~ll~~~~~~~~--------~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~   70 (161)
                      .||||.|+..+   +.+.++.|++.+..++.        .+..|.||||+   |+..|       ..+++++|++.+...
T Consensus       236 ~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~---A~~~g-------~~~~v~~Ll~~~~~~  305 (373)
T 2fo1_E          236 MTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHY---AAQVS-------NMPIVKYLVGEKGSN  305 (373)
T ss_dssp             CCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHH---HHSSC-------CHHHHHHHHHHSCCC
T ss_pred             CCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHH---HHHhC-------CHHHHHHHHHhcCCC
Confidence            47899999988   88999999988877765        56789999999   55555       489999999987444


Q ss_pred             hhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhC
Q 048100           71 LLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGA  150 (161)
Q Consensus        71 ~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  150 (161)
                      ++..|..|.||||+|+..|+.+++++|+++|++                 ++.+|..|.|||++|+..|+.+++++|+++
T Consensus       306 ~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad-----------------~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~  368 (373)
T 2fo1_E          306 KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS-----------------VEAVDATDHTARQLAQANNHHNIVDIFDRC  368 (373)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-----------------SSCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----------------ccCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            788899999999999999999999999999998                 788899999999999999999999999999


Q ss_pred             CCCC
Q 048100          151 DPAF  154 (161)
Q Consensus       151 ~~~~  154 (161)
                      +++-
T Consensus       369 ~a~~  372 (373)
T 2fo1_E          369 RPER  372 (373)
T ss_dssp             C---
T ss_pred             Cccc
Confidence            8863

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.91  E-value=3.4e-24  Score=150.85  Aligned_cols=122  Identities=18%  Similarity=0.231  Sum_probs=111.1

Q ss_pred             ChHHHHHH-----HcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCC
Q 048100            2 NSDLYEAA-----AKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNA   76 (161)
Q Consensus         2 ~~~l~~A~-----~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~   76 (161)
                      .||||.|+     ..++.+.++.|++.+...+..+..|.||||+|   +..|       ..+++++|++.|++ ++..|.
T Consensus       146 ~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A---~~~g-------~~~~v~~Ll~~gad-~n~~d~  214 (276)
T 4hbd_A          146 YSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLA---VSHG-------RVDVVKALLACEAD-VNVQDD  214 (276)
T ss_dssp             CCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHH---HHTT-------CHHHHHHHHHTTCC-TTCCCT
T ss_pred             CCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHH---HHcC-------CHHHHHHHHhCCCC-CCCCCC
Confidence            48999999     67899999999999988888999999999995   4555       48999999999998 578899


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHH-hhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCC
Q 048100           77 KGDSPLHVAARYGHAAVVGALIE-FAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGAD  151 (161)
Q Consensus        77 ~~~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  151 (161)
                      .|+||||+|+..|+.+++++|++ .|++                 ++.+|..|+||||+|+..|+.+++++|+++.
T Consensus       215 ~G~TpLh~A~~~g~~~iv~~Ll~~~gad-----------------~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          215 DGSTALMCACEHGHKEIAGLLLAVPSCD-----------------ISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHTSTTCC-----------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHhcCCCC-----------------CcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            99999999999999999999999 8888                 7889999999999999999999999999653

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.90  E-value=1.1e-22  Score=128.92  Aligned_cols=103  Identities=24%  Similarity=0.362  Sum_probs=92.8

Q ss_pred             cccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchh
Q 048100           29 LVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQE  108 (161)
Q Consensus        29 ~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~  108 (161)
                      .+|..|.||||+|+   ..+       ..+++++|++.+++ ++..+..|+||||+|+..++.+++++|++.|++     
T Consensus         5 ~~~~~g~t~L~~A~---~~~-------~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-----   68 (137)
T 3c5r_A            5 FTNHRGETLLHIAS---IKG-------DIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL-----   68 (137)
T ss_dssp             CCCTTCCCHHHHHH---HHT-------CHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----
T ss_pred             CcCCCCCCHHHHHH---HcC-------CHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc-----
Confidence            57889999999954   444       48999999999987 577899999999999999999999999999988     


Q ss_pred             hhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCcC
Q 048100          109 LESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       109 ~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                                  ++.+|..|.||||+|+..|+.+++++|+++|++++.++.
T Consensus        69 ------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  107 (137)
T 3c5r_A           69 ------------VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNI  107 (137)
T ss_dssp             ------------TTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             ------------ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Confidence                        778899999999999999999999999999999886654

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.88  E-value=3.5e-23  Score=127.47  Aligned_cols=103  Identities=21%  Similarity=0.300  Sum_probs=92.4

Q ss_pred             cccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchh
Q 048100           29 LVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQE  108 (161)
Q Consensus        29 ~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~  108 (161)
                      .+|..|.||||+|+   ..+       ..+++++|++.+++ ++..+..|+||||+|+..++.+++++|++.|++     
T Consensus         4 ~~d~~g~t~L~~A~---~~~-------~~~~~~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-----   67 (115)
T 2l6b_A            4 WGSKDGNTPLHNAA---KNG-------HAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-----   67 (115)
T ss_dssp             CCSCSSCCHHHHHH---HHT-------CHHHHHHHTTTTCC-SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC-----
T ss_pred             ccCCCCCCHHHHHH---HcC-------CHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-----
Confidence            46889999999954   444       48999999999987 577899999999999999999999999999988     


Q ss_pred             hhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCcC
Q 048100          109 LESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       109 ~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                                  ++.+|..|+||||+|+..++.+++++|+++|++++..+.
T Consensus        68 ------------~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~  106 (115)
T 2l6b_A           68 ------------VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSW  106 (115)
T ss_dssp             ------------TTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSC
T ss_pred             ------------CcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCc
Confidence                        778899999999999999999999999999999876543

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.88  E-value=1.3e-22  Score=128.42  Aligned_cols=106  Identities=18%  Similarity=0.188  Sum_probs=94.8

Q ss_pred             CccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcC
Q 048100           25 QLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQ  104 (161)
Q Consensus        25 ~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~  104 (161)
                      ..++..+..|.||||+|   +..+       ..+++++|++.+++ ++..+..|+||||+|+. ++.+++++|+++|++ 
T Consensus         3 ~~~~~~~~~g~t~L~~A---~~~~-------~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-   69 (136)
T 1d9s_A            3 PGIHMLGGSSDAGLATA---AARG-------QVETVRQLLEAGAD-PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAE-   69 (136)
T ss_dssp             CCCSCCCCCCSCHHHHH---HHTT-------CHHHHHHHHHTTCC-TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC-
T ss_pred             CCccCCCCCCccHHHHH---HHcC-------CHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC-
Confidence            45678899999999994   4555       48999999999987 57789999999999999 999999999999998 


Q ss_pred             CchhhhcCchhHHHHHhhccCCC-CCcHhHHHHHcCCHHHHHHHHhCCCCCCCCcC
Q 048100          105 PGQELESGVKSTTRYMLGMKNDE-EDTALHEAVQSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       105 ~~~~~~~~~~~~~~~l~~~~~~~-g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                                      ++.+|.. |+||||+|+..|+.+++++|+++|++++.++.
T Consensus        70 ----------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~  109 (136)
T 1d9s_A           70 ----------------PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDA  109 (136)
T ss_dssp             ----------------SSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSS
T ss_pred             ----------------CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC
Confidence                            7778888 99999999999999999999999999887654

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.88  E-value=4.8e-22  Score=123.75  Aligned_cols=101  Identities=17%  Similarity=0.146  Sum_probs=88.9

Q ss_pred             cCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchhhh
Q 048100           31 IHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELE  110 (161)
Q Consensus        31 ~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~  110 (161)
                      +..|.||||+|   +..|       ..+++++|++.+.+ ++..+..|+||||+|+..++.+++++|++.|++       
T Consensus         4 ~~~~~~~l~~A---~~~~-------~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------   65 (123)
T 3aaa_C            4 GSMCDKEFMWA---LKNG-------DLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-------   65 (123)
T ss_dssp             ---CHHHHHHH---HHTT-------CHHHHHHHHHTTCC-TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC-------
T ss_pred             ccccchHHHHH---HHcC-------CHHHHHHHHHcCCC-cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-------
Confidence            46788999994   4555       48999999999987 577899999999999999999999999999988       


Q ss_pred             cCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCcC
Q 048100          111 SGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       111 ~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                                ++.+|..|+||||+|+..++.+++++|++.|++++.++.
T Consensus        66 ----------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~  104 (123)
T 3aaa_C           66 ----------INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGP  104 (123)
T ss_dssp             ----------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             ----------CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence                      778899999999999999999999999999999886654

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.88  E-value=8e-22  Score=117.02  Aligned_cols=91  Identities=27%  Similarity=0.310  Sum_probs=83.4

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      .||||.|+..|+.+.+++|++.+..++.+|..|.||||+|   +..+       ..+++++|++.|++ ++..|..|+||
T Consensus         3 ~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A---~~~~-------~~~~v~~Ll~~ga~-~~~~d~~g~t~   71 (93)
T 1n0q_A            3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA---ARNG-------HLEVVKLLLEAGAD-VNAKDKNGRTP   71 (93)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH---HHTT-------CHHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH---HHcC-------CHHHHHHHHHcCCC-CCccCCCCCCH
Confidence            5899999999999999999999999999999999999995   4555       48999999999988 57789999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhc
Q 048100           82 LHVAARYGHAAVVGALIEFAEK  103 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~  103 (161)
                      ||+|+..|+.+++++|++.|++
T Consensus        72 l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           72 LHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999999999999999863

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.87  E-value=1.9e-21  Score=127.63  Aligned_cols=110  Identities=22%  Similarity=0.227  Sum_probs=92.4

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      .|||+.|+..++.+.++.|++.+.+++.+|..|.||||+|   +..|       ..+++++|+++|++ ++.+|.+|+||
T Consensus        38 ~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A---~~~g-------~~~~v~~Ll~~gad-vn~~d~~G~Tp  106 (169)
T 4gpm_A           38 RTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHA---AENG-------HKEVVKLLISKGAD-VNAKDSDGRTP  106 (169)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH---HHTT-------CHHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHH---HHcC-------CHHHHHHHHHCcCC-CCCCCCCCCCH
Confidence            4799999999999999999999999999999999999994   4455       48899999999887 57788999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCch----------hhhcCchhHHHHHhh
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQ----------ELESGVKSTTRYMLG  122 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~----------~~~~~~~~~~~~l~~  122 (161)
                      ||+|++.|+.+++++|++.|+++...          +...|+.+++++|++
T Consensus       107 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~  157 (169)
T 4gpm_A          107 LHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEK  157 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999999887655          345666667777764

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.87  E-value=1.4e-21  Score=123.66  Aligned_cols=102  Identities=19%  Similarity=0.195  Sum_probs=89.9

Q ss_pred             ccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchhh
Q 048100           30 VIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQEL  109 (161)
Q Consensus        30 ~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~  109 (161)
                      ....+.||||+|+   ..|       ..+++++|++.+.+ ++..+..|+||||+|+..++.+++++|++.|++      
T Consensus        10 ~~~~~~t~l~~A~---~~g-------~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------   72 (136)
T 2jab_A           10 HGSDLGKKLLEAA---RAG-------QDDEVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD------   72 (136)
T ss_dssp             --CHHHHHHHHHH---HHT-------CHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC------
T ss_pred             ccccccHHHHHHH---HhC-------CHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------
Confidence            4456889999954   444       48999999999987 577899999999999999999999999999988      


Q ss_pred             hcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCcC
Q 048100          110 ESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       110 ~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                                 ++.+|..|.||||+|+..|+.+++++|+++|++++..+.
T Consensus        73 -----------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  111 (136)
T 2jab_A           73 -----------VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDK  111 (136)
T ss_dssp             -----------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             -----------CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCC
Confidence                       778899999999999999999999999999999876653

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.87  E-value=1.8e-21  Score=137.75  Aligned_cols=136  Identities=17%  Similarity=0.073  Sum_probs=109.3

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhc--------
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQ--------   73 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~--------   73 (161)
                      .||||.|+..|+.+.+++|++.+..++..|..|.||||+|+   ..|       +.+++++|+++|+++ +.        
T Consensus        74 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~---~~g-------~~~~v~~Ll~~g~~~-~~~~~~g~t~  142 (299)
T 1s70_B           74 LTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAA---SCG-------YLDIAEYLISQGAHV-GAVNSEGDTP  142 (299)
T ss_dssp             CBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH---HHT-------CHHHHHHHHHTTCCT-TCCCTTSCCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH---HcC-------CHHHHHHHHhCCCCC-CCcCCCCCCH
Confidence            48999999999999999999999999999999999999955   444       478889888887653 21        


Q ss_pred             ----------------------------------------------------cCCCCCcHHHHHHHhCCHHHHHHHHHhh
Q 048100           74 ----------------------------------------------------VNAKGDSPLHVAARYGHAAVVGALIEFA  101 (161)
Q Consensus        74 ----------------------------------------------------~~~~~~t~l~~a~~~~~~~~~~~Ll~~g  101 (161)
                                                                          .+..|.||||+|+..|+.+++++|++.|
T Consensus       143 l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  222 (299)
T 1s70_B          143 LDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR  222 (299)
T ss_dssp             HHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTT
T ss_pred             HHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcC
Confidence                                                                2346889999999999999999999999


Q ss_pred             hcCCch----------hhhcCchhHHHHHh------hccCCCCCcHhHHHHHcCCHHHHHHHH
Q 048100          102 EKQPGQ----------ELESGVKSTTRYML------GMKNDEEDTALHEAVQSGSLDVVEILL  148 (161)
Q Consensus       102 ~~~~~~----------~~~~~~~~~~~~l~------~~~~~~g~t~l~~a~~~~~~~~~~~Ll  148 (161)
                      ++.+..          +...|+.+++++|+      +.+|..|.||+++|.......+.+++-
T Consensus       223 ~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~l~~l~~  285 (299)
T 1s70_B          223 YDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQK  285 (299)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSGGGHHHHHHHH
T ss_pred             CCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            887655          45677777888886      568999999999997754444444443

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.86  E-value=7.9e-23  Score=149.48  Aligned_cols=142  Identities=14%  Similarity=0.141  Sum_probs=109.1

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCcc---ccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccc--hhccCC
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLG---SLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSL--LLQVNA   76 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~---~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~--~~~~~~   76 (161)
                      +||||.|++.|+.+.+++|++.+...   +..+..|.||||+   |+..|       +.+++++|+++|++.  .+..+.
T Consensus        93 ~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~---Aa~~G-------~~eiv~~Ll~~gad~~~~~i~~~  162 (376)
T 2aja_A           93 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRL---AAENG-------HLHVLNRLCELAPTEIMAMIQAE  162 (376)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHH---HHHTT-------CHHHHHHHHHSCTTTHHHHHSHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHH---HHHcC-------CHHHHHHHHhCCCCccccccCCC
Confidence            38999999999999999999887622   3455678899999   55556       489999999999641  112222


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHhhhcCCc--h----------hh-hcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHH
Q 048100           77 KGDSPLHVAARYGHAAVVGALIEFAEKQPG--Q----------EL-ESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDV  143 (161)
Q Consensus        77 ~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~--~----------~~-~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~  143 (161)
                      + +||||+|+..|+.+++++|+++|++...  .          +. ..|+.+++++|++.. ..|.|||++|+..|+.++
T Consensus       163 ~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~g-a~~~taL~~Aa~~g~~ev  240 (376)
T 2aja_A          163 N-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP-VMLAYAEIHEFEYGEKYV  240 (376)
T ss_dssp             H-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH-HHHHHHHHCTTTTTTTTH
T ss_pred             C-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCC-CccchHHHHHHHCCCHHH
Confidence            2 8999999999999999999999988543  1          46 788888888888733 457888888888888888


Q ss_pred             HHHHHhCCCCCC
Q 048100          144 VEILLGADPAFP  155 (161)
Q Consensus       144 ~~~Ll~~~~~~~  155 (161)
                      +++|++.|++++
T Consensus       241 v~lL~~~ga~~~  252 (376)
T 2aja_A          241 NPFIARHVNRLK  252 (376)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHhcCcccc
Confidence            888887776543

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.86  E-value=7.6e-21  Score=130.44  Aligned_cols=115  Identities=16%  Similarity=0.063  Sum_probs=93.0

Q ss_pred             HHHHHhhhCcccc---ccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHH
Q 048100           17 FNQLAIDRQLGSL---VIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAV   93 (161)
Q Consensus        17 v~~ll~~~~~~~~---~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~   93 (161)
                      ++.|++.+..++.   .+..|.||||+|+   ..|       ..+++++|++.|++ ++..+..|+||||+|+..|+.++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~---~~g-------~~~~v~~Ll~~g~~-~~~~d~~g~tpLh~A~~~g~~~~   69 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAA---LTG-------ELEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSI   69 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHH---HHT-------CHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             CeehhccCCCCccccccccchhHHHHHHH---HcC-------CHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHH
Confidence            3566766666544   4556778899954   445       48999999999987 57789999999999999999999


Q ss_pred             HHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCcC
Q 048100           94 VGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus        94 ~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                      +++|++.|++                 ++.+|..|+||||+|+..|+.+++++|++.|++++..++
T Consensus        70 v~~Ll~~ga~-----------------~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~  118 (229)
T 2vge_A           70 VDFLITAGAN-----------------VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTL  118 (229)
T ss_dssp             HHHHHHTTCC-----------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCS
T ss_pred             HHHHHHCCCC-----------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccC
Confidence            9999999998                 788899999999999999999999999999999987653

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.86  E-value=1.3e-20  Score=117.09  Aligned_cols=98  Identities=32%  Similarity=0.469  Sum_probs=88.2

Q ss_pred             CCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcC
Q 048100           33 KKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESG  112 (161)
Q Consensus        33 ~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~  112 (161)
                      .|.||||+|+   ..+       ..+++++|++.+.+ ++..+..|.||||+|+..++.+++++|++.|.+         
T Consensus         1 ~g~t~L~~A~---~~~-------~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---------   60 (126)
T 1n0r_A            1 NGRTPLHLAA---RNG-------HLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD---------   60 (126)
T ss_dssp             CCCCHHHHHH---HHT-------CHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---------
T ss_pred             CCccHHHHHH---HcC-------cHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC---------
Confidence            4899999954   444       48999999999887 567789999999999999999999999999988         


Q ss_pred             chhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCc
Q 048100          113 VKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSA  158 (161)
Q Consensus       113 ~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  158 (161)
                              ++.+|..|.||||+|+..++.+++++|++.|++++.++
T Consensus        61 --------~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~   98 (126)
T 1n0r_A           61 --------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD   98 (126)
T ss_dssp             --------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             --------CcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccC
Confidence                    77789999999999999999999999999999987654

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.86  E-value=8.5e-23  Score=135.52  Aligned_cols=101  Identities=21%  Similarity=0.207  Sum_probs=89.0

Q ss_pred             ccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchhh
Q 048100           30 VIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQEL  109 (161)
Q Consensus        30 ~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~  109 (161)
                      .+..|.||||+|   +..|       ..+++++|++ +.+ ++..+..|+||||+|+..|+.+++++|+++|++      
T Consensus        40 ~~~~g~t~L~~A---~~~g-------~~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~------  101 (183)
T 3deo_A           40 VVSEYETPWWTA---ARKA-------DEQALSQLLE-DRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD------  101 (183)
T ss_dssp             HHHHHHHHHHHH---HHTT-------CHHHHHHHTT-TSC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC------
T ss_pred             CCCCCCCHHHHH---HHcC-------CHHHHHHHHh-cCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------
Confidence            356899999994   4555       4899999999 665 577899999999999999999999999999998      


Q ss_pred             hcCchhHHHHHhhccC-CCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCcC
Q 048100          110 ESGVKSTTRYMLGMKN-DEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       110 ~~~~~~~~~~l~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                                 ++.++ ..|+||||+|+..|+.+++++|+++|++++.++.
T Consensus       102 -----------~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~  141 (183)
T 3deo_A          102 -----------LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDE  141 (183)
T ss_dssp             -----------TTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT
T ss_pred             -----------CCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCC
Confidence                       66666 8999999999999999999999999999886654

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.84  E-value=6.9e-21  Score=129.73  Aligned_cols=103  Identities=22%  Similarity=0.256  Sum_probs=91.4

Q ss_pred             cccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHh-hhcCCch
Q 048100           29 LVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEF-AEKQPGQ  107 (161)
Q Consensus        29 ~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-g~~~~~~  107 (161)
                      ..+..|.||||+|   +..|       ..+++++|++.+++ ++..+..|+||||+|+..|+.+++++|++. |++    
T Consensus        68 ~~~~~g~t~L~~A---~~~g-------~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~----  132 (222)
T 3ehr_A           68 EQAESIDNPLHEA---AKRG-------NLSWLRECLDNRVG-VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE----  132 (222)
T ss_dssp             HHEEEESCHHHHH---HHHT-------CHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC----
T ss_pred             ccccccccccccc---cccC-------cHHHHHHHHhCCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC----
Confidence            3466789999995   4555       48999999999987 577899999999999999999999999998 887    


Q ss_pred             hhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCcC
Q 048100          108 ELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       108 ~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                                   ++.+|..|+||||+|+..|+.+++++|+++|++++.++.
T Consensus       133 -------------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~  171 (222)
T 3ehr_A          133 -------------LNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNI  171 (222)
T ss_dssp             -------------CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCT
T ss_pred             -------------ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccC
Confidence                         778899999999999999999999999999999887654

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.84  E-value=3.7e-21  Score=118.32  Aligned_cols=103  Identities=21%  Similarity=0.252  Sum_probs=91.5

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      .|+||.|+..|+++.++.|++.+..++..|..|.||||+   |+..+       ..+++++|++.|++ ++..+..|.||
T Consensus        10 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~---A~~~~-------~~~~~~~Ll~~g~~-~~~~d~~g~tp   78 (115)
T 2l6b_A           10 NTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHL---AAKNG-------HAEIVKLLLAKGAD-VNARSKDGNTP   78 (115)
T ss_dssp             CCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHH---HHTTT-------CHHHHHHHTTTTCC-TTCCCTTCCCT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH---HHHcC-------cHHHHHHHHHcCCC-CcccCCCCCCH
Confidence            589999999999999999999999999999999999999   45555       48999999999987 57789999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHh
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTAL  132 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l  132 (161)
                      ||+|+..++.+++++|+++|++                 ++.++..|.||-
T Consensus        79 l~~A~~~~~~~~~~~Ll~~ga~-----------------~n~~~~~~~~~~  112 (115)
T 2l6b_A           79 EHLAKKNGHHEIVKLLDAKGAD-----------------VNARSWGSSHHH  112 (115)
T ss_dssp             THHHHTTTCHHHHHHHHTTSSS-----------------HHHHSCCCC---
T ss_pred             HHHHHHCCCHHHHHHHHHcCCC-----------------CCcCCccccccc
Confidence            9999999999999999999999                 777888888874

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.84  E-value=2.5e-21  Score=139.19  Aligned_cols=117  Identities=16%  Similarity=0.143  Sum_probs=100.0

Q ss_pred             HHHHHcCChHHHHHHHhhhCcccc-ccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHHHH
Q 048100            6 YEAAAKGVIEPFNQLAIDRQLGSL-VIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHV   84 (161)
Q Consensus         6 ~~A~~~g~~~~v~~ll~~~~~~~~-~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~   84 (161)
                      |.|+..+..+.++.|++.+.+++. .|..|.||||+|   +..|       +.+++++|+++|++ ++..+..|+||||+
T Consensus       102 ~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~A---a~~g-------~~~~v~~Ll~~Gad-~n~~d~~g~TpLh~  170 (327)
T 1sw6_A          102 HVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWL---TSIA-------NLELVKHLVKHGSN-RLYGDNMGESCLVK  170 (327)
T ss_dssp             --CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHH---HHTT-------CHHHHHHHHHTTCC-TTBCCTTCCCHHHH
T ss_pred             HHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHH---HHcC-------CHHHHHHHHHcCCC-CCCcCCCCCCHHHH
Confidence            556666666777888888899999 899999999994   5555       48999999999988 57889999999999


Q ss_pred             HHHhCC---HHHHHHHHHhh-hcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHH----cCCHHHHHHHHhC
Q 048100           85 AARYGH---AAVVGALIEFA-EKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQ----SGSLDVVEILLGA  150 (161)
Q Consensus        85 a~~~~~---~~~~~~Ll~~g-~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~----~~~~~~~~~Ll~~  150 (161)
                      |+..|+   .++++.|++.+ .+                 ++.+|..|+||||+|+.    .|+.+++++|++.
T Consensus       171 A~~~g~~~~~~~~~~ll~~~~~~-----------------~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~  227 (327)
T 1sw6_A          171 AVKSVNNYDSGTFEALLDYLYPC-----------------LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDI  227 (327)
T ss_dssp             HHHSSHHHHTTCHHHHHHHHGGG-----------------GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred             HHHhcccccHHHHHHHHHhhhcc-----------------ccCCCCCCCCHHHHHHHHccccccHHHHHHHHHH
Confidence            999998   68888888887 44                 67799999999999999    8999999999976

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.84  E-value=4.9e-21  Score=123.88  Aligned_cols=103  Identities=19%  Similarity=0.213  Sum_probs=88.8

Q ss_pred             ccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCch
Q 048100           28 SLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQ  107 (161)
Q Consensus        28 ~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~  107 (161)
                      ...+..|.||||+|+   ..|       ..+++++|+++|++ ++..+..|+||||+|+ .|+.+++++|++.|++    
T Consensus         6 ~~~~~~~~t~L~~A~---~~g-------~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~----   69 (156)
T 1bi7_B            6 GSSMEPSADWLATAA---ARG-------RVEEVRALLEAGAN-PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE----   69 (156)
T ss_dssp             ----CCSTTHHHHHH---HHT-------CHHHHHHHHTTTCC-TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC----
T ss_pred             cCCCccchHHHHHHH---HcC-------CHHHHHHHHHcCCC-CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC----
Confidence            345778999999954   444       48999999999887 5778999999999985 8999999999999988    


Q ss_pred             hhhcCchhHHHHHhhccCCCCCc-HhHHHHHcCCHHHHHHHHhCCCCCCCCcC
Q 048100          108 ELESGVKSTTRYMLGMKNDEEDT-ALHEAVQSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       108 ~~~~~~~~~~~~l~~~~~~~g~t-~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                                   ++.+|..|+| |||+|+..|+.+++++|+++|++++.++.
T Consensus        70 -------------~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~  109 (156)
T 1bi7_B           70 -------------PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDA  109 (156)
T ss_dssp             -------------CCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCT
T ss_pred             -------------CCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCC
Confidence                         7788999999 99999999999999999999999987654

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.84  E-value=1.1e-20  Score=134.63  Aligned_cols=106  Identities=15%  Similarity=0.071  Sum_probs=89.2

Q ss_pred             ChHHHHHHHc---CChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCC
Q 048100            2 NSDLYEAAAK---GVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKG   78 (161)
Q Consensus         2 ~~~l~~A~~~---g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~   78 (161)
                      .||||.|+..   |+++.+++|++.+.+++.+|..|.||||+|   +..|       ..+++++|++.|++ ++..|..|
T Consensus       191 ~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A---~~~g-------~~~~v~~Ll~~gad-~~~~d~~G  259 (301)
T 2b0o_E          191 ELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYA---ALYN-------QPDCLKLLLKGRAL-VGTVNEAG  259 (301)
T ss_dssp             ECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHH---HHTT-------CHHHHHHHHHTTCC-CSCCCTTS
T ss_pred             ccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHH---HHcC-------CHHHHHHHHHcCCC-CCCcCCCC
Confidence            3799999997   899999999999999999999999999994   4555       48999999999988 57889999


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCH
Q 048100           79 DSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSL  141 (161)
Q Consensus        79 ~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~  141 (161)
                      .||||+|+..++.+++++|++.|++                       .|.||||+|+..|+.
T Consensus       260 ~TpL~~A~~~~~~~iv~~Ll~~ga~-----------------------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          260 ETALDIARKKHHKECEELLEQAQAG-----------------------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHHHH-----------------------TTSSCCC--------
T ss_pred             CCHHHHHHHcCCHHHHHHHHHhcCC-----------------------CCCChhHHHHhcCCc
Confidence            9999999999999999999999875                       489999999998864

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.83  E-value=1.6e-20  Score=129.93  Aligned_cols=101  Identities=22%  Similarity=0.216  Sum_probs=89.3

Q ss_pred             ccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchhh
Q 048100           30 VIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQEL  109 (161)
Q Consensus        30 ~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~  109 (161)
                      .+..|.||||+   ++..|       +.+++++|++ +.+ ++..+..|+||||+|+..|+.+++++|+++|++      
T Consensus        41 ~~~~g~t~L~~---A~~~g-------~~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~------  102 (244)
T 3ui2_A           41 VVSEYETPWWT---AARKA-------DEQALSQLLE-DRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD------  102 (244)
T ss_dssp             HHHHHHHHHHH---HHTTT-------CHHHHHHTTT-TCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC------
T ss_pred             cccCCCCHHHH---HHHcC-------CHHHHHHHHc-CCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC------
Confidence            45679999999   55555       4899999999 766 678899999999999999999999999999998      


Q ss_pred             hcCchhHHHHHhhccC-CCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCcC
Q 048100          110 ESGVKSTTRYMLGMKN-DEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       110 ~~~~~~~~~~l~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                                 ++.++ ..|+||||+|+..|+.+++++|+++|++++.++.
T Consensus       103 -----------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~  142 (244)
T 3ui2_A          103 -----------LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDE  142 (244)
T ss_dssp             -----------TTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             -----------CCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Confidence                       66666 8899999999999999999999999999987654

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.83  E-value=4.3e-20  Score=112.87  Aligned_cols=93  Identities=26%  Similarity=0.365  Sum_probs=80.5

Q ss_pred             cccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCc
Q 048100           27 GSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPG  106 (161)
Q Consensus        27 ~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~  106 (161)
                      ....+..|.|+||+|+   ..+       ..+++++|++.+++ ++..|..|.||||+|+..|+.+++++|+++|++   
T Consensus        17 ~~~~~~~g~t~L~~A~---~~g-------~~~~v~~Ll~~g~~-i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~---   82 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAA---RAG-------QDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD---   82 (110)
T ss_dssp             -----CCHHHHHHHHH---HHT-------CHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---
T ss_pred             ccccCCccchHHHHHH---HcC-------CHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---
Confidence            3457889999999954   444       48999999999887 577799999999999999999999999999988   


Q ss_pred             hhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHH
Q 048100          107 QELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEIL  147 (161)
Q Consensus       107 ~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~L  147 (161)
                                    ++.+|..|+||||+|+..|+.+++++|
T Consensus        83 --------------~~~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           83 --------------VXAQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             --------------TTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             --------------ccccccCCCcHHHHHHHcCCHHHHHHh
Confidence                          788899999999999999999999987

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.82  E-value=2.4e-22  Score=146.88  Aligned_cols=131  Identities=19%  Similarity=0.217  Sum_probs=101.1

Q ss_pred             hHHHHHHHcCChHHHHHHHhhhCc---cccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchh-ccCCCC
Q 048100            3 SDLYEAAAKGVIEPFNQLAIDRQL---GSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLL-QVNAKG   78 (161)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~---~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~-~~~~~~   78 (161)
                      ||||.|++.|+.+.|++|++.+.+   .+..+.. .||||+   |+..|       +.+++++|+++|+++.. ..+..|
T Consensus       130 tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~---Aa~~G-------~~eiv~~Ll~~ga~~~~~~~d~~g  198 (376)
T 2aja_A          130 QAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRL---AAENG-------HLHVLNRLCELAPTEATAMIQAEN  198 (376)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHH---HHHTT-------CHHHHHHHHHSCGGGHHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHH---HHHCC-------CHHHHHHHHHcCCccchhccCCCC
Confidence            699999999999999999988854   2222233 999999   55555       48999999999987432 267889


Q ss_pred             CcHHHHHH-HhCCHHHHHHHHHhhhcCC---chhhhcCchhHHHHHhhccC--CCCCcHhHHHHHcCCHHHH
Q 048100           79 DSPLHVAA-RYGHAAVVGALIEFAEKQP---GQELESGVKSTTRYMLGMKN--DEEDTALHEAVQSGSLDVV  144 (161)
Q Consensus        79 ~t~l~~a~-~~~~~~~~~~Ll~~g~~~~---~~~~~~~~~~~~~~l~~~~~--~~g~t~l~~a~~~~~~~~~  144 (161)
                      +||||+|+ ..|+.+++++|++.|+...   ..+...|+.+++++|++...  ....+++++|+..|+.+++
T Consensus       199 ~TpL~~Aa~~~G~~eiv~~Ll~~ga~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~~~l~~A~~~g~~~vv  270 (376)
T 2aja_A          199 YYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLV  270 (376)
T ss_dssp             HHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCS
T ss_pred             CCHHHHHHHHCCCHHHHHHHHhCCCccchHHHHHHHCCCHHHHHHHHhcCcccccccHHHHHHHHCCChhhh
Confidence            99999999 9999999999999876421   11578899999999975321  1223578888888887765

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.80  E-value=3.6e-19  Score=115.37  Aligned_cols=109  Identities=20%  Similarity=0.183  Sum_probs=89.5

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      .||||.|+. |+.+.+++|++.+..++..+..|.||||+|+   ..+       ..+++++|++.|++ ++..+..|.||
T Consensus        39 ~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~---~~~-------~~~~v~~Ll~~g~~-~~~~~~~g~t~  106 (162)
T 1ihb_A           39 RTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAA---RAG-------FLDTLQTLLEFQAD-VNIEDNEGNLP  106 (162)
T ss_dssp             CCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH---HHT-------CHHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred             ccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHH---HcC-------CHHHHHHHHHcCCC-CCCcCCCCCCH
Confidence            578999998 9999999999999999999999999999954   444       48899999999887 57778999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcC-Cch----------hhhcCchhHHHHHhh
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQ-PGQ----------ELESGVKSTTRYMLG  122 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~-~~~----------~~~~~~~~~~~~l~~  122 (161)
                      ||+|++.|+.+++++|++.|++. ...          +...|+.+++++|++
T Consensus       107 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  158 (162)
T 1ihb_A          107 LHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA  158 (162)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999998874 222          345566667777664

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.76  E-value=6.3e-18  Score=103.16  Aligned_cols=85  Identities=18%  Similarity=0.223  Sum_probs=77.5

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      .|+||.|+..|+.+.+++|++.+..++.+|..|.||||+|   +..+       ..+++++|++.|++ ++..+..|+||
T Consensus        25 ~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A---~~~~-------~~~~v~~Ll~~ga~-~~~~d~~g~tp   93 (110)
T 2zgd_A           25 GKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLA---ARNG-------HLEVVKLLLEAGAD-VXAQDKFGKTA   93 (110)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH---HHTT-------CHHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHH---HHcC-------CHHHHHHHHHcCCC-ccccccCCCcH
Confidence            4799999999999999999999999999999999999995   4555       48999999999987 57789999999


Q ss_pred             HHHHHHhCCHHHHHHH
Q 048100           82 LHVAARYGHAAVVGAL   97 (161)
Q Consensus        82 l~~a~~~~~~~~~~~L   97 (161)
                      ||+|+..++.+++++|
T Consensus        94 l~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           94 FDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHHTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHh
Confidence            9999999999999987

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.76  E-value=4e-18  Score=120.04  Aligned_cols=91  Identities=20%  Similarity=0.209  Sum_probs=84.1

Q ss_pred             ChHHHHHHHc---CChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCC
Q 048100            2 NSDLYEAAAK---GVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKG   78 (161)
Q Consensus         2 ~~~l~~A~~~---g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~   78 (161)
                      .||||.|+..   |+.+.++.|++.+.+++.+|..|.||||+|   +..|       +.+++++|++.|++ ++..|..|
T Consensus       170 ~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A---~~~g-------~~~~v~~Ll~~gad-~~~~d~~g  238 (278)
T 1dcq_A          170 ETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC---CLTD-------NAECLKLLLRGKAS-IEIANESG  238 (278)
T ss_dssp             CBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHH---HHTT-------CHHHHHHHHHTTCC-TTCCCTTS
T ss_pred             CCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHH---HHcC-------CHHHHHHHHHcCCC-CCCccCCC
Confidence            5899999999   899999999999999999999999999994   4555       48999999999998 57889999


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHhhhc
Q 048100           79 DSPLHVAARYGHAAVVGALIEFAEK  103 (161)
Q Consensus        79 ~t~l~~a~~~~~~~~~~~Ll~~g~~  103 (161)
                      .||||+|+..|+.+++++|+++|++
T Consensus       239 ~tpL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          239 ETPLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999999999999999999986

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.75  E-value=7.3e-18  Score=122.89  Aligned_cols=101  Identities=16%  Similarity=0.118  Sum_probs=88.5

Q ss_pred             cCCCCcHHHHHHHHhhh-cccccccccHHHHHHHHHhCccchhccC--CCCCcHHHHHHHhCCHHHHHHHHHhhhcCCch
Q 048100           31 IHKKNSVLHVNIIASYT-QNKEGESVSTKFVELVLETCPSLLLQVN--AKGDSPLHVAARYGHAAVVGALIEFAEKQPGQ  107 (161)
Q Consensus        31 ~~~g~t~l~~a~~a~~~-~~~~~~~~~~~~v~~Ll~~~~~~~~~~~--~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~  107 (161)
                      +..+.|+||+   |+.. +       ..+++++|++.|+++ +..+  ..|.||||+|+..|+.+++++|+++|++    
T Consensus       196 ~~~~~t~L~~---Aa~~~g-------~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad----  260 (368)
T 3jue_A          196 SLHPGALLFR---ASGHPP-------SLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGAN----  260 (368)
T ss_dssp             -CCHHHHHHH---HTSSSC-------CHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC----
T ss_pred             cCCCCcHHHH---HHHccC-------CHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC----
Confidence            3456689999   5555 5       489999999999884 5556  8899999999999999999999999998    


Q ss_pred             hhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCcC
Q 048100          108 ELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       108 ~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                                   ++.+|..|+||||+|+..|+.+++++|+++|++++..+.
T Consensus       261 -------------vn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~  299 (368)
T 3jue_A          261 -------------VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDS  299 (368)
T ss_dssp             -------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             -------------CCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCC
Confidence                         788899999999999999999999999999999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	161
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.001
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	9e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-07
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-07
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	0.001
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	0.002
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	7e-07
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	0.002
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.001
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.001
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	7e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	8e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.001
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.002
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.004
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	5e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	7e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	1e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	7e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	0.002
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	0.004
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.001
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.001
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	5e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.002
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	5e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.004
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	0.002

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 2e-09
 Identities = 26/129 (20%), Positives = 41/129 (31%), Gaps = 21/129 (16%)

Query: 29  LVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAK---GDSPLHVA 85
           L+      V   + +          S     VE +          VN +   G +PL +A
Sbjct: 167 LLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILA 226

Query: 86  ARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVE 145
               H  +V  L+E    Q   E+               + +  TAL  AV+     + E
Sbjct: 227 VEKKHLGLVQRLLE----QEHIEIN------------DTDSDGKTALLLAVELKLKKIAE 270

Query: 146 ILL--GADP 152
           +L   GA  
Sbjct: 271 LLCKRGAST 279

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 2e-06
 Identities = 18/102 (17%), Positives = 30/102 (29%), Gaps = 24/102 (23%)

Query: 75  NAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGM----------- 123
              G + L  AA  GH  V+  L++            G  +    +L             
Sbjct: 145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHL 204

Query: 124 ----------KNDEEDTALHEAVQSGSLDVVEILL---GADP 152
                     + +   T L  AV+   L +V+ LL     + 
Sbjct: 205 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI 246

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 7e-05
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 127 EEDTALHEAVQSGSLDVVEILL--GADPAFPYSANG 160
           E++  L +AVQ+  +D+V+ LL  GA+  F     G
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGG 39

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 7e-05
 Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 16/72 (22%)

Query: 77  KGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAV 136
           + +  L  A +     +V  L           LE G     +     + +   T LH AV
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQL-----------LEGGANVNFQ-----EEEGGWTPLHNAV 47

Query: 137 QSGSLDVVEILL 148
           Q    D+VE+LL
Sbjct: 48  QMSREDIVELLL 59

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.001
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 10/81 (12%)

Query: 75  NAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHE 134
           +  G +    AA YG    +  L +       +     ++  T+           TAL +
Sbjct: 102 DFYGFTAFMEAAVYGKVKALKFLYK-------RGANVNLRRKTKEDQERLRKGGATALMD 154

Query: 135 AVQSGSLDVVEILL---GADP 152
           A + G ++V++ILL   GAD 
Sbjct: 155 AAEKGHVEVLKILLDEMGADV 175

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 52.8 bits (125), Expect = 2e-09
 Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 17/93 (18%)

Query: 56  STKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKS 115
           +   V+ ++    S   + +  G +P+ +AA+ G   VV  LI+            G   
Sbjct: 199 NMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ-----------QGAS- 246

Query: 116 TTRYMLGMKNDEEDTALHEAVQSGSLDVVEILL 148
                +   +  + TA   A  +   ++V+I  
Sbjct: 247 -----VEAVDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 38.9 bits (89), Expect = 9e-05
 Identities = 11/71 (15%), Positives = 19/71 (26%), Gaps = 19/71 (26%)

Query: 79  DSPLHVAARY-GHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQ 137
           +SP+ +     G  A+   +               V                T LH    
Sbjct: 1   ESPIKLHTEAAGSYAITEPITR-----------ESVNII-------DPRHNRTVLHWIAS 42

Query: 138 SGSLDVVEILL 148
           + S +  E L+
Sbjct: 43  NSSAEKSEDLI 53

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 36.6 bits (83), Expect = 6e-04
 Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 13/64 (20%)

Query: 74  VNAK----GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEED 129
           VN        + LH  A    A     LI    K   + + +G        +   + +E+
Sbjct: 25  VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAK---ECIAAGAD------VNAMDCDEN 75

Query: 130 TALH 133
           T L 
Sbjct: 76  TPLM 79

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 2e-09
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 19/74 (25%)

Query: 81  PLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGS 140
           PLHVA+  GH  +V  L           L+ G          + N + +T LH A ++G 
Sbjct: 3   PLHVASFMGHLPIVKNL-----------LQRGAS------PNVSNVKVETPLHMAARAGH 45

Query: 141 LDVVEILL--GADP 152
            +V + LL   A  
Sbjct: 46  TEVAKYLLQNKAKV 59

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 4e-08
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 17/74 (22%)

Query: 74  VNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALH 133
               G SPLH AA+ GH  +V  L           L++G            + +  T L 
Sbjct: 326 KTKLGYSPLHQAAQQGHTDIVTLL-----------LKNGAS------PNEVSSDGTTPLA 368

Query: 134 EAVQSGSLDVVEIL 147
            A + G + V ++L
Sbjct: 369 IAKRLGYISVTDVL 382

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (111), Expect = 2e-07
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 17/75 (22%)

Query: 74  VNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALH 133
            N K ++PLH+AAR GH  V   L           L++  K      +  K  ++ T LH
Sbjct: 29  SNVKVETPLHMAARAGHTEVAKYL-----------LQNKAK------VNAKAKDDQTPLH 71

Query: 134 EAVQSGSLDVVEILL 148
            A + G  ++V++LL
Sbjct: 72  CAARIGHTNMVKLLL 86

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 5e-07
 Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 18/96 (18%)

Query: 75  NAKGDSPLHVAARYGHAAVVGALIE----------------FAEKQPGQELESGVKSTTR 118
           N  G +PLH+ A+ GH  V   LI+                      G           +
Sbjct: 261 NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ 320

Query: 119 YMLGMKNDEEDTALHEAVQSGSLDVVEILL--GADP 152
             +  K     + LH+A Q G  D+V +LL  GA P
Sbjct: 321 ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP 356

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 7e-05
 Identities = 30/108 (27%), Positives = 38/108 (35%), Gaps = 25/108 (23%)

Query: 70  LLLQ----VNAK---GDSPLHVAARYGHAAVVGALIEFAEK----------------QPG 106
            LLQ    VNAK     +PLH AAR GH  +V  L+E                    + G
Sbjct: 51  YLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREG 110

Query: 107 QELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILL--GADP 152
                               +  T LH A + G + V E+LL   A P
Sbjct: 111 HVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP 158

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.001
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 19/91 (20%)

Query: 64  LETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGM 123
           L          + +G +PLH+AA+ GHA +V  L+                   +    +
Sbjct: 217 LLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSK-----------------QANGNL 259

Query: 124 KNDEEDTALHEAVQSGSLDVVEILL--GADP 152
            N    T LH   Q G + V ++L+  G   
Sbjct: 260 GNKSGLTPLHLVAQEGHVPVADVLIKHGVMV 290

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)

Query: 130 TALHEAVQSGSLDVVEILL--GADP 152
           T LH A   G L +V+ LL  GA P
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASP 26

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.0 bits (105), Expect = 7e-07
 Identities = 24/138 (17%), Positives = 47/138 (34%), Gaps = 18/138 (13%)

Query: 19  QLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEG--ESVSTKFVELVLETCPSLLLQVNA 76
            L        L      ++LH  II S         +      +  +++     +     
Sbjct: 162 LLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTN 221

Query: 77  KGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAV 136
           + +S  +        +++  L               +K     ML  ++   DT L+ A 
Sbjct: 222 EKESKPNDKNGERKDSILENL--------------DLKWIIANMLNAQDSNGDTCLNIAA 267

Query: 137 QSGSLDVVEILL--GADP 152
           + G++ +V+ LL  GADP
Sbjct: 268 RLGNISIVDALLDYGADP 285

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.1 bits (87), Expect = 2e-04
 Identities = 16/93 (17%), Positives = 36/93 (38%), Gaps = 4/93 (4%)

Query: 11  KGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSL 70
           K  +E F Q  +  ++  +     N   + N     +  ++        ++ V +  P+ 
Sbjct: 36  KMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNT 95

Query: 71  LLQVNAK----GDSPLHVAARYGHAAVVGALIE 99
            L +N      G++PLH      +  +V  L++
Sbjct: 96  QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK 128

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.0 bits (79), Expect = 0.002
 Identities = 20/109 (18%), Positives = 44/109 (40%), Gaps = 14/109 (12%)

Query: 48  QNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARY-GHAAVVGALIEFAEKQPG 106
           Q  + E+   + +   ++  P+ L   ++  +S    + +   H +    L E  +  P 
Sbjct: 35  QKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPN 94

Query: 107 QELESGVKSTTRYMLGMKNDEE-DTALHEAVQSGSLDVVEILL--GADP 152
            +L           L +  DE  +T LH      +L++V+ L+  G++ 
Sbjct: 95  TQLN----------LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR 133

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.5 bits (101), Expect = 3e-06
 Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 14/68 (20%)

Query: 74  VNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALH 133
           V   GD+ LH+A  + H   +  L+                S     L ++ND   TALH
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLG--------------FSAGHEYLDLQNDLGQTALH 50

Query: 134 EAVQSGSL 141
            A   G  
Sbjct: 51  LAAILGEA 58

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.1 bits (92), Expect = 3e-05
 Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 2/41 (4%)

Query: 121 LGMKNDEEDTALHEAVQSGSLDVVEILL--GADPAFPYSAN 159
            G   ++ DTALH AV       ++ LL   A   +    N
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQN 42

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.8 bits (81), Expect = 0.001
 Identities = 6/31 (19%), Positives = 11/31 (35%), Gaps = 2/31 (6%)

Query: 123 MKNDEEDTALHEAVQSGSLDVVEILL--GAD 151
            +     T L  A+   +  +  +L   GA 
Sbjct: 220 ARMYGGRTPLGSALLRPNPILARLLRAHGAP 250

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.5 bits (80), Expect = 0.001
 Identities = 6/32 (18%), Positives = 10/32 (31%)

Query: 74  VNAKGDSPLHVAARYGHAAVVGALIEFAEKQP 105
               G +PL  A    +  +   L      +P
Sbjct: 221 RMYGGRTPLGSALLRPNPILARLLRAHGAPEP 252

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 4e-06
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 78  GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQ 137
           GD+PLH+A   G+   V  L+           + G +      L + N+   T LH AV 
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNL-------FQQGGRE------LDIYNNLRQTPLHLAVI 49

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 4e-05
 Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 17/68 (25%)

Query: 77  KGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAV 136
            G S LH A+  G   +V  L+            SG          +KN   DT L  A 
Sbjct: 176 SGSSALHSASGRGLLPLVRTLVR-----------SGAD------SSLKNCHNDTPLMVAR 218

Query: 137 QSGSLDVV 144
               +D++
Sbjct: 219 SRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 7e-04
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 6/33 (18%)

Query: 126 DEEDTALHEAVQSGSLDVVEILL------GADP 152
           ++ DT LH AV  G+L  V  L+      G + 
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL 33

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 42.0 bits (97), Expect = 8e-06
 Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 19/109 (17%)

Query: 46  YTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQP 105
               KE E +  +     L +     ++    G + LHVAA  G+  V+  LI+      
Sbjct: 167 EAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA----- 221

Query: 106 GQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILL--GADP 152
                       RY + +K+ +  T LH A   G  +   IL+    D 
Sbjct: 222 ------------RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDM 258

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.2 bits (87), Expect = 2e-04
 Identities = 15/72 (20%), Positives = 23/72 (31%), Gaps = 21/72 (29%)

Query: 77  KGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAV 136
            G +PLH AA +G       L+           E+         +   N    TA   A 
Sbjct: 231 DGWTPLHAAAHWGKEEACRILV-----------ENLCD------MEAVNKVGQTAFDVAD 273

Query: 137 QSGSLDVVEILL 148
           +    D++  L 
Sbjct: 274 E----DILGYLE 281

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 35.5 bits (80), Expect = 0.001
 Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 2/30 (6%)

Query: 125 NDEEDTALHEAVQSGSLDVVEILL--GADP 152
             ++      A  SG  + V  LL  GAD 
Sbjct: 37  KFDDGAVFLAACSSGDTEEVLRLLERGADI 66

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 1e-05
 Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 13/60 (21%)

Query: 78  GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQ 137
           GDS LH+A  +   A+   +I                      L  +N+ + T LH AV 
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQV-------KGDLAF------LNFQNNLQQTPLHLAVI 48

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (78), Expect = 0.002
 Identities = 2/32 (6%), Positives = 7/32 (21%), Gaps = 2/32 (6%)

Query: 123 MKNDEEDTALHEAVQSGSLDVVEILL--GADP 152
               +  +         S  + + L     + 
Sbjct: 173 RVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN 204

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (76), Expect = 0.004
 Identities = 5/26 (19%), Positives = 9/26 (34%)

Query: 74  VNAKGDSPLHVAARYGHAAVVGALIE 99
           V  +G SP  +        +   L +
Sbjct: 174 VTYQGYSPYQLTWGRPSTRIQQQLGQ 199

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 41.4 bits (96), Expect = 1e-05
 Identities = 7/76 (9%), Positives = 16/76 (21%), Gaps = 12/76 (15%)

Query: 73  QVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTAL 132
                    L           +  L+     +                      + +  L
Sbjct: 274 LQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPT------------ATIPGDANELL 321

Query: 133 HEAVQSGSLDVVEILL 148
             A++ G+     +LL
Sbjct: 322 RLALRLGNQGACALLL 337

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 40.3 bits (93), Expect = 4e-05
 Identities = 22/96 (22%), Positives = 32/96 (33%), Gaps = 21/96 (21%)

Query: 63  VLETCPSLLLQ------VNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKST 116
            L+T   LL        + A+      +AA  GH  V+  L E A               
Sbjct: 105 ALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPT------------- 151

Query: 117 TRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADP 152
              ++ M   E   A   A ++G L V+  L    P
Sbjct: 152 --EIMAMIQAENYHAFRLAAENGHLHVLNRLCELAP 185

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 36.8 bits (84), Expect = 6e-04
 Identities = 12/85 (14%), Positives = 17/85 (20%), Gaps = 6/85 (7%)

Query: 70  LLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQEL------ESGVKSTTRYMLGM 123
            LL               YG   V   +     +              GV         +
Sbjct: 215 FLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECL 274

Query: 124 KNDEEDTALHEAVQSGSLDVVEILL 148
           +       L        LD +  LL
Sbjct: 275 QGFYMLRNLIRRNDEVLLDDIRFLL 299

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.2 bits (90), Expect = 5e-05
 Identities = 19/135 (14%), Positives = 41/135 (30%), Gaps = 21/135 (15%)

Query: 35  NSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAAR---YGHA 91
            + LH   +    + ++   +   + + V  T    L   +   ++ LH+A R       
Sbjct: 4   AAKLH--SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL 61

Query: 92  AVV------GALIEFAEKQPGQELESGVKSTTRYMLGM----------KNDEEDTALHEA 135
            +V         ++    +    L     +     L +           N+  +T L  A
Sbjct: 62  HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA 121

Query: 136 VQSGSLDVVEILLGA 150
            +       E+L  A
Sbjct: 122 KRLKHEHCEELLTQA 136

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 7e-05
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 119 YMLGMKNDEEDTALHEAVQSGSLDVVEILL 148
             +G +N + DTA   A   G  +VV ++ 
Sbjct: 124 SNVGHRNHKGDTACDLARLYGRNEVVSLMQ 153

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 1e-04
 Identities = 9/27 (33%), Positives = 12/27 (44%)

Query: 73  QVNAKGDSPLHVAARYGHAAVVGALIE 99
             N KGD+   +A  YG   VV  +  
Sbjct: 128 HRNHKGDTACDLARLYGRNEVVSLMQA 154

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (83), Expect = 3e-04
 Identities = 6/25 (24%), Positives = 9/25 (36%), Gaps = 2/25 (8%)

Query: 130 TALHEAVQSGSLDVVEILL--GADP 152
             L  A   G L+ +  LL    + 
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNV 27

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.0 bits (89), Expect = 7e-05
 Identities = 10/42 (23%), Positives = 20/42 (47%)

Query: 56 STKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGAL 97
          + + +  +L     L   ++  G++ LH+AAR+  A     L
Sbjct: 1  TAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRL 42

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 35.2 bits (79), Expect = 0.002
 Identities = 4/25 (16%), Positives = 10/25 (40%)

Query: 123 MKNDEEDTALHEAVQSGSLDVVEIL 147
           + +  +      A +    D+V +L
Sbjct: 184 ITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 34.0 bits (76), Expect = 0.004
 Identities = 6/24 (25%), Positives = 9/24 (37%)

Query: 74  VNAKGDSPLHVAARYGHAAVVGAL 97
            +     P  VA+   H  +V  L
Sbjct: 185 TDHMDRLPRDVASERLHHDIVRLL 208

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.0 bits (89), Expect = 8e-05
 Identities = 11/63 (17%), Positives = 17/63 (26%), Gaps = 16/63 (25%)

Query: 79  DSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQS 138
           + PLH A        V  L+          L              K+ +    LH +V  
Sbjct: 1   NYPLHQACMENEFFKVQELLH----SKPSLLLQ------------KDQDGRIPLHWSVSF 44

Query: 139 GSL 141
            + 
Sbjct: 45  QAH 47

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.7 bits (83), Expect = 5e-04
 Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 21/81 (25%)

Query: 73  QVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTAL 132
             + +G +PL  A   GH      L+E    + G E +            + +++   A 
Sbjct: 167 WQDKQGWTPLFHALAEGHGDAAVLLVE----KYGAEYD------------LVDNKGAKAE 210

Query: 133 HEAVQSGSLDVVEILL--GAD 151
             A+      V +  L    D
Sbjct: 211 DVALNE---QVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.0 bits (81), Expect = 0.001
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 10/56 (17%)

Query: 35 NSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGH 90
          N  LH    A               V+ +L + PSLLLQ +  G  PLH +  +  
Sbjct: 1  NYPLH---QACMENEFF-------KVQELLHSKPSLLLQKDQDGRIPLHWSVSFQA 46

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.0 bits (81), Expect = 0.001
 Identities = 7/31 (22%), Positives = 13/31 (41%)

Query: 129 DTALHEAVQSGSLDVVEILLGADPAFPYSAN 159
           +  LH+A        V+ LL + P+     +
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKD 31

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 9e-05
 Identities = 20/112 (17%), Positives = 37/112 (33%), Gaps = 18/112 (16%)

Query: 59  FVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIE----------------FAE 102
            +   L    + +  VN  G +PLH AA      +   L+E                   
Sbjct: 84  EIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRA 143

Query: 103 KQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILL--GADP 152
              G      +    +    +++ E +T LH A     ++  ++L+  GA  
Sbjct: 144 AAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI 195

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 1e-04
 Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 18/111 (16%)

Query: 60  VELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRY 119
           ++  +    SL  + +    + LH A   GH  +V  L++       ++           
Sbjct: 19  LKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA 78

Query: 120 ----------------MLGMKNDEEDTALHEAVQSGSLDVVEILL--GADP 152
                            +   N    T LH A      ++  +LL  GA+P
Sbjct: 79  SAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 129

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 1e-04
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 121 LGMKNDEEDTALHEAVQSGSLDVVEILLG 149
           L  ++    T L  A+Q G+ D+V+IL G
Sbjct: 126 LHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 5e-04
 Identities = 8/25 (32%), Positives = 14/25 (56%)

Query: 75  NAKGDSPLHVAARYGHAAVVGALIE 99
           +A+G +PL +A + G   +V  L  
Sbjct: 130 DARGLTPLELALQRGAQDLVDILQG 154

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.8 bits (83), Expect = 3e-04
 Identities = 7/25 (28%), Positives = 14/25 (56%)

Query: 123 MKNDEEDTALHEAVQSGSLDVVEIL 147
            ++    TA   ++ +G+ D+ EIL
Sbjct: 128 TQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.8 bits (78), Expect = 0.002
 Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 130 TALHEAVQSGSLDVVEILL--GAD 151
             L EA ++G  D V IL+  GA 
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAP 27

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (81), Expect = 5e-04
 Identities = 7/32 (21%), Positives = 12/32 (37%)

Query: 119 YMLGMKNDEEDTALHEAVQSGSLDVVEILLGA 150
             L +++      +  A + G  DV   L  A
Sbjct: 93  ARLDVRDAWGRLPVDLAEELGHRDVARYLRAA 124

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.4 bits (74), Expect = 0.004
 Identities = 8/24 (33%), Positives = 10/24 (41%)

Query: 78  GDSPLHVAARYGHAAVVGALIEFA 101
           G  P+ +A   GH  V   L   A
Sbjct: 102 GRLPVDLAEELGHRDVARYLRAAA 125

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.1 bits (76), Expect = 0.002
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 129 DTALHEAVQSGSLDVVEILL 148
           D     A+++G LD V+  +
Sbjct: 3   DKEFMWALKNGDLDEVKDYV 22

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	161
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.95
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.95
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.95
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.95
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.94
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.94
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.93
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.93
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.92
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.92
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.92
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.91
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.9
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.9
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.9
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.89
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.89
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.88
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.87
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.87
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.87
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.86
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.85
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.81
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.8
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.79
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.79
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.73
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.7
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.64

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.3e-28  Score=151.06  Aligned_cols=120  Identities=22%  Similarity=0.155  Sum_probs=107.6

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCC-c
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGD-S   80 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~-t   80 (161)
                      .++||.|++.|+++.|++|++.+.+++.++..|.||+|+   +. .|       +.+++++|+++|+++ +..+..+. |
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~---a~-~g-------~~~~v~~Ll~~ga~~-~~~~~~~~~~   71 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQV---MM-MG-------SARVAELLLLHGAEP-NCADPATLTR   71 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTS---SC-TT-------CHHHHHHHHTTTCCC-CCCCTTTCCC
T ss_pred             hhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccc---cc-cc-------ccccccccccccccc-cccccccccc
Confidence            468999999999999999999999999999999999998   32 34       489999999999884 55666655 7


Q ss_pred             HHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhC
Q 048100           81 PLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGA  150 (161)
Q Consensus        81 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  150 (161)
                      |||+|++.|+.+++++|+++|++                 ++.+|..|+||||+|++.|+.+++++|+.+
T Consensus        72 ~L~~A~~~g~~~~v~~Ll~~ga~-----------------~~~~d~~G~T~l~~A~~~g~~~~v~~Llsa  124 (125)
T d1bi7b_          72 PVHDAAREGFLDTLVVLHRAGAR-----------------LDVRDAWGRLPVDLAEELGHRDVARYLRAA  124 (125)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTCC-----------------SSCCCTTCCCHHHHHHHHTCHHHHHHHSSC
T ss_pred             ccccccccccccccccccccccc-----------------cccccCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            99999999999999999999988                 788999999999999999999999999853

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=6.8e-27  Score=149.78  Aligned_cols=125  Identities=19%  Similarity=0.165  Sum_probs=108.2

Q ss_pred             HHHHHHHcCChHHHHHHHhhhCccccc------cCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCC
Q 048100            4 DLYEAAAKGVIEPFNQLAIDRQLGSLV------IHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAK   77 (161)
Q Consensus         4 ~l~~A~~~g~~~~v~~ll~~~~~~~~~------~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~   77 (161)
                      .|+.|++.+++..+.+++..+.+....      +..|.||||+|+.....+       ..+++++|++.|++ ++.+|..
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~-------~~~iv~~Ll~~gad-in~~d~~   80 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRT-------SLHIVDFLVQNSGN-LDKQTGK   80 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTT-------THHHHHHHHHHCSC-TTCCCTT
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCC-------CHHHHHHHHHcCCC-hhhhhhh
Confidence            467899999999999998777655433      677999999966543333       48999999999988 5888999


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCC
Q 048100           78 GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPA  153 (161)
Q Consensus        78 ~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~  153 (161)
                      |+||||+|+..|+.+++++|+++|++                 ++.+|..|+||||+|++.|+.+++++|++++..
T Consensus        81 g~TpLh~A~~~~~~~~v~~Ll~~gad-----------------~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          81 GSTALHYCCLTDNAECLKLLLRGKAS-----------------IEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCC-----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             hccccccccccccccccccccccCcc-----------------ccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            99999999999999999999999998                 788999999999999999999999999976553

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=6.9e-27  Score=160.55  Aligned_cols=147  Identities=18%  Similarity=0.130  Sum_probs=113.9

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCc---cccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCC
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQL---GSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKG   78 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~---~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~   78 (161)
                      +||||.|++.|+.+.+++|++.+..   .+.++..|.||||+|+   ..|       +.+++++|+++|++ ++..|.+|
T Consensus        10 ~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~---~~g-------~~~iv~~Ll~~ga~-i~~~d~~g   78 (255)
T d1oy3d_          10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAA---ILG-------EASTVEKLYAAGAG-VLVAERGG   78 (255)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHH---HHT-------CHHHHHHHHHTTCC-SSCCCTTS
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHH---hhc-------cccccccccccccc-cccccccc
Confidence            6999999999999999999988765   4667889999999954   444       48899999999987 56778889


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHhhhcCCch---------------------------------------------------
Q 048100           79 DSPLHVAARYGHAAVVGALIEFAEKQPGQ---------------------------------------------------  107 (161)
Q Consensus        79 ~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~---------------------------------------------------  107 (161)
                      .||||+|+..++.+++++|++.+......                                                   
T Consensus        79 ~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g  158 (255)
T d1oy3d_          79 HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDG  158 (255)
T ss_dssp             CCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTS
T ss_pred             chhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccC
Confidence            99999999999999988887665432211                                                   


Q ss_pred             ------hhhcCchhHHHHHhh-------ccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCcC
Q 048100          108 ------ELESGVKSTTRYMLG-------MKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       108 ------~~~~~~~~~~~~l~~-------~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                            +...+..+++++|++       ..+..|.||||+|+..|+.+++++|+++|++++.+++
T Consensus       159 ~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~  223 (255)
T d1oy3d_         159 HTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMY  223 (255)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             cccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCC
Confidence                  123444556777752       3456788888888888888888888888888876654

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=5e-29  Score=153.32  Aligned_cols=107  Identities=16%  Similarity=0.162  Sum_probs=98.5

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      ||||++|++.|+++.|+.|++.+.+++.++..|.||||+|   +..++       .+++++|++.|++ ++..|..|+||
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A---~~~~~-------~~~~~~ll~~g~d-in~~d~~g~tp   71 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYA---ADCGQ-------LEILEFLLLKGAD-INAPDKHHITP   71 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHH---HHHST-------TTHHHHHHHSSCT-TTCCSSSCSCH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcccccccccccccccc---ccccc-------cccccccccccce-eeecccccccc
Confidence            7999999999999999999999999999999999999995   44553       7799999999988 57789999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHH
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAV  136 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~  136 (161)
                      ||+|+++|+.+++++|+++|++                 ++.+|..|.||||+|.
T Consensus        72 Lh~A~~~~~~~~v~~Ll~~Gad-----------------~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          72 LLSAVYEGHVSCVKLLLSKGAD-----------------KTVKGPDGLTALEATD  109 (118)
T ss_dssp             HHHHHTTTCCHHHHHHHTTCCC-----------------SSSSSSSTCCCCCTCS
T ss_pred             hhhhhhcCchhhhhhhhccccc-----------------ceeeCCCCCCHHHHHh
Confidence            9999999999999999999998                 7888999999999873

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.5e-27  Score=147.31  Aligned_cols=121  Identities=18%  Similarity=0.261  Sum_probs=105.7

Q ss_pred             hHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHH
Q 048100            3 SDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPL   82 (161)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (161)
                      +.|+.|+..|+++.|++|++.+.+++.+|..|+||||+|+   ..+       +.+++++|++.+++ ++..|.+|+|||
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~---~~~-------~~~~~~~ll~~g~~-~~~~d~~g~tpL   71 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAV---CAG-------HTEIVKFLVQFGVN-VNAADSDGWTPL   71 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHH---HHT-------CHHHHHHHHHHTCC-TTCCCTTCCCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCcccccccccccccccc---ccc-------cccccccccccccc-cccccccCcccc
Confidence            5789999999999999999999999999999999999955   444       48999999999987 578899999999


Q ss_pred             HHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccC-CCCCcHhHHH--HHcCCHHHHHHHHhCC
Q 048100           83 HVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKN-DEEDTALHEA--VQSGSLDVVEILLGAD  151 (161)
Q Consensus        83 ~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~g~t~l~~a--~~~~~~~~~~~Ll~~~  151 (161)
                      |+|+.+|+.+++++|+++|++                 ++..+ .+|+||++++  ...|+.+++++|++.+
T Consensus        72 h~A~~~g~~~~v~~Ll~~ga~-----------------v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          72 HCAASCNNVQVCKFLVESGAA-----------------VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC-----------------TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHcCCC-----------------cccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            999999999999999999998                 44444 5688887765  5679999999998643

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.3e-25  Score=151.92  Aligned_cols=157  Identities=18%  Similarity=0.246  Sum_probs=124.7

Q ss_pred             ChHHHHHHHcCChHHHHHHHh-hhCccccccCCCCcHHHHHHHHhhhc----------c-------------cccccccH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAI-DRQLGSLVIHKKNSVLHVNIIASYTQ----------N-------------KEGESVST   57 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~-~~~~~~~~~~~g~t~l~~a~~a~~~~----------~-------------~~~~~~~~   57 (161)
                      |+.|+.++..|+++.|+.++. .+..++.+|..|+||||+|+..+...          .             .....+..
T Consensus         4 ~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (223)
T d1uoha_           4 NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRD   83 (223)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccccccccccccccccccccccccccc
Confidence            567888999999999988764 56677888999999999966554220          0             00113357


Q ss_pred             HHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCch----------hhhcCchhHHHHH------h
Q 048100           58 KFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQ----------ELESGVKSTTRYM------L  121 (161)
Q Consensus        58 ~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~----------~~~~~~~~~~~~l------~  121 (161)
                      +++++|++++.+ ++..|..|.||||+|+.+|+.+++++|+++|++++..          +...+...+.+++      +
T Consensus        84 ~i~~~Ll~~~~d-~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i  162 (223)
T d1uoha_          84 EIVKALLGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAST  162 (223)
T ss_dssp             HHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred             chhHHHhccCce-eEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhcccccee
Confidence            899999998887 5778999999999999999999999999999887555          2344444556665      3


Q ss_pred             hccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCcC
Q 048100          122 GMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       122 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                      +.+|..|+||||+|+..|+.+++++|+++|++++.++.
T Consensus       163 ~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~  200 (223)
T d1uoha_         163 NIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENK  200 (223)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCT
T ss_pred             eeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCC
Confidence            67899999999999999999999999999999987654

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=1.9e-26  Score=147.26  Aligned_cols=127  Identities=21%  Similarity=0.212  Sum_probs=107.5

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcc-------c----------------ccccccHH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQN-------K----------------EGESVSTK   58 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~-------~----------------~~~~~~~~   58 (161)
                      +|||+.|++.|+.+.|+.|++.+...+ .|..|.||||+|+.......       .                .......+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccccccccccccccccccccccccccccccccccccccce
Confidence            589999999999999999999988766 78999999999765542210       0                01133577


Q ss_pred             HHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHc
Q 048100           59 FVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQS  138 (161)
Q Consensus        59 ~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~  138 (161)
                      +++++...+.+ ...++.+|+||||+|+..|+.+++++|+++|++                 ++.+|..|.||||+|+.+
T Consensus        82 ~~~~l~~~~~~-~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad-----------------~~~~d~~g~Tpl~~A~~~  143 (153)
T d1awcb_          82 IVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKYGAD-----------------VHTQSKFCKTAFDISIDN  143 (153)
T ss_dssp             HHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----------------TTCCCTTSCCHHHHHHHT
T ss_pred             eeecccccCCc-cccccccCchHHHhhhhcchhheeeeccccccC-----------------CcccCCCCCCHHHHHHHc
Confidence            88888888876 467799999999999999999999999999998                 788899999999999999


Q ss_pred             CCHHHHHHH
Q 048100          139 GSLDVVEIL  147 (161)
Q Consensus       139 ~~~~~~~~L  147 (161)
                      |+.+++++|
T Consensus       144 g~~eiv~lL  152 (153)
T d1awcb_         144 GNEDLAEIL  152 (153)
T ss_dssp             TCHHHHHHH
T ss_pred             CCHHHHHhC
Confidence            999999987

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.94  E-value=1.4e-25  Score=156.62  Aligned_cols=146  Identities=18%  Similarity=0.189  Sum_probs=123.5

Q ss_pred             hHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHH
Q 048100            3 SDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPL   82 (161)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (161)
                      |+|+.||+.|+++.|++|++.|.+++..|..|.||||+|+   ..|       +.+++++|++++.+ ....+..+.+||
T Consensus        42 t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~---~~g-------~~eiv~~Ll~~~~~-~~~~~~~~~~~L  110 (291)
T d1s70b_          42 AVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQAC---IDD-------NVDMVKFLVENGAN-INQPDNEGWIPL  110 (291)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHH---HTT-------CHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHH---hcC-------Cceeeeeecccccc-cccccccccccc
Confidence            7899999999999999999999999999999999999954   444       48999999999887 466688899999


Q ss_pred             HHHHHhCCHHHHHHHHHhhhcCCch-------------------------------------------------------
Q 048100           83 HVAARYGHAAVVGALIEFAEKQPGQ-------------------------------------------------------  107 (161)
Q Consensus        83 ~~a~~~~~~~~~~~Ll~~g~~~~~~-------------------------------------------------------  107 (161)
                      +.++..++.++++.|+++|......                                                       
T Consensus       111 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (291)
T d1s70b_         111 HAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHI  190 (291)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             cccccccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhccccc
Confidence            9999999999999999988654332                                                       


Q ss_pred             ---------------hhhcCchhHHHHHh------hccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCcC
Q 048100          108 ---------------ELESGVKSTTRYML------GMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       108 ---------------~~~~~~~~~~~~l~------~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                                     +...|..+++++|+      +.++..|+||||+|+..|+.++|++|+++|+|++.+++
T Consensus       191 ~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~  263 (291)
T d1s70b_         191 NDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNK  263 (291)
T ss_dssp             CCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             ccccccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence                           12233334555654      46889999999999999999999999999999988764

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.1e-25  Score=144.17  Aligned_cols=137  Identities=21%  Similarity=0.233  Sum_probs=119.6

Q ss_pred             hHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHH
Q 048100            3 SDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPL   82 (161)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (161)
                      ++||.|+..|+++.|+.|++.+.+++.+|..|.||||+   ++ .+       +.+++++|++++++ ++..+..+.+++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~---A~-~~-------~~ei~~~Ll~~~a~-~~~~~~~~~~~l   70 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV---MK-LG-------NPEIARRLLLRGAN-PDLKDRTGFAVI   70 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHH---CC-SS-------CHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccc---cc-cc-------cccccccccccccc-cccccccCcccc
Confidence            68999999999999999999999999999999999998   33 34       37899999999987 577789999999


Q ss_pred             HHHHHhCCHHHHHHHHHhhhcCCch----------hhhcCchhHHHHHh-------hccCCCCCcHhHHHHHcCCHHHHH
Q 048100           83 HVAARYGHAAVVGALIEFAEKQPGQ----------ELESGVKSTTRYML-------GMKNDEEDTALHEAVQSGSLDVVE  145 (161)
Q Consensus        83 ~~a~~~~~~~~~~~Ll~~g~~~~~~----------~~~~~~~~~~~~l~-------~~~~~~g~t~l~~a~~~~~~~~~~  145 (161)
                      +.++..+..+.+++|+..+......          +...+..+++++++       +.+|..|+||||+|+..++.++++
T Consensus        71 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~  150 (156)
T d1ihba_          71 HDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS  150 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            9999999999999999998776544          35566667777764       567889999999999999999999


Q ss_pred             HHHhCC
Q 048100          146 ILLGAD  151 (161)
Q Consensus       146 ~Ll~~~  151 (161)
                      +|+++|
T Consensus       151 ~Ll~~G  156 (156)
T d1ihba_         151 LMQANG  156 (156)
T ss_dssp             HHHHTC
T ss_pred             HHHhcC
Confidence            999887

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.8e-25  Score=153.42  Aligned_cols=142  Identities=19%  Similarity=0.157  Sum_probs=112.6

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCc-------------
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCP-------------   68 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~-------------   68 (161)
                      .||||+|+..|+.+.++.|++.+.+++..|..|.||||+|   ...++       .+++++|++...             
T Consensus        46 ~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A---~~~~~-------~~~~~~Ll~~~~~~~~~~~~~~~~~  115 (255)
T d1oy3d_          46 QTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLA---CRVRA-------HTCACVLLQPRPSHPRDASDTYLTQ  115 (255)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHH---TTTTC-------HHHHHHHSSSCCSSCCCC-------
T ss_pred             CCccchHHhhcccccccccccccccccccccccchhhhhh---hccCc-------hHHHHHHHhhccchhcccchhhhhH
Confidence            4899999999999999999999999999999999999995   44332       444544433211             


Q ss_pred             ---------------------------------cchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCch--------
Q 048100           69 ---------------------------------SLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQ--------  107 (161)
Q Consensus        69 ---------------------------------~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~--------  107 (161)
                                                       ..++..+..|.||||+|++.++.+++++|++.+++....        
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~Tp  195 (255)
T d1oy3d_         116 SQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTP  195 (255)
T ss_dssp             ----------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCH
T ss_pred             HhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhccccccccccccccccc
Confidence                                             112234677889999999999999999999888776543        


Q ss_pred             ---hhhcCchhHHHHHh------hccCCCCCcHhHHHHHcCCHHHHHHHHhCCCC
Q 048100          108 ---ELESGVKSTTRYML------GMKNDEEDTALHEAVQSGSLDVVEILLGADPA  153 (161)
Q Consensus       108 ---~~~~~~~~~~~~l~------~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~  153 (161)
                         +...|+.+++++|+      +.+|..|+||||+|+..++.+++++|+++|++
T Consensus       196 L~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         196 LHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             ccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence               34556666788775      56889999999999999999999999999997

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.1e-24  Score=147.33  Aligned_cols=149  Identities=17%  Similarity=0.152  Sum_probs=112.4

Q ss_pred             ChHHHHHHHcCChHHHHHHHhh-hCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccc--hhccCCCC
Q 048100            2 NSDLYEAAAKGVIEPFNQLAID-RQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSL--LLQVNAKG   78 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~--~~~~~~~~   78 (161)
                      |+|||+||+.|+++.|+.|+.. +...+.+|..|+||||+|   +..|       ..+++++|+++|+++  ....+..|
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A---~~~g-------~~~iv~~Ll~~ga~~~~~~~~~~~~   70 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWS---VSFQ-------AHEITSFLLSKMENVNLDDYPDDSG   70 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHH---HHTT-------CHHHHHHHHTTCTTCCGGGCCCTTS
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHH---HHcC-------Cccccchhhhhhccccccccccccc
Confidence            7899999999999999999864 567888999999999995   4555       488999999988753  23445667


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHhhhcCCch---------------------------------------------hhhcCc
Q 048100           79 DSPLHVAARYGHAAVVGALIEFAEKQPGQ---------------------------------------------ELESGV  113 (161)
Q Consensus        79 ~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~---------------------------------------------~~~~~~  113 (161)
                      .+|+|+++..+..++++.++..+......                                             +...|.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~  150 (229)
T d1ixva_          71 WTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGS  150 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccc
Confidence            77777777766666666666555432221                                             233444


Q ss_pred             hhHHHHHh-------hccCCCCCcHhHHHHHcCCHHHHHHHHh-CCCCCCCCcCC
Q 048100          114 KSTTRYML-------GMKNDEEDTALHEAVQSGSLDVVEILLG-ADPAFPYSANG  160 (161)
Q Consensus       114 ~~~~~~l~-------~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~  160 (161)
                      .+++++|+       +.+|..|+||||+|+..|+.+++++|++ .|++++.+++.
T Consensus       151 ~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~  205 (229)
T d1ixva_         151 LKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNK  205 (229)
T ss_dssp             HHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTT
T ss_pred             ccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCC
Confidence            45666664       4678899999999999999999999996 58998877653

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.5e-24  Score=157.42  Aligned_cols=145  Identities=23%  Similarity=0.250  Sum_probs=122.5

Q ss_pred             hHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHH
Q 048100            3 SDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPL   82 (161)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (161)
                      ||||.||..|+++.|+.|++.|..++..|..|.||||+|+   ..|       +.+++++|+++|++ ++..+..|+|||
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~---~~g-------~~~iv~~Ll~~gad-i~~~~~~g~t~L   70 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAA---RAG-------HTEVAKYLLQNKAK-VNAKAKDDQTPL   70 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHH---HHT-------CHHHHHHHHHHTCC-SSCCCTTSCCHH
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH---HcC-------CHHHHHHHHHCcCC-CCCCCCCCCCHH
Confidence            8999999999999999999999999999999999999955   444       48999999999987 577899999999


Q ss_pred             HHHHHhCCHHHHHHHHHhhhcCCch-------------------------------------------hhhcCchhHHHH
Q 048100           83 HVAARYGHAAVVGALIEFAEKQPGQ-------------------------------------------ELESGVKSTTRY  119 (161)
Q Consensus        83 ~~a~~~~~~~~~~~Ll~~g~~~~~~-------------------------------------------~~~~~~~~~~~~  119 (161)
                      |+|+..|+.+++++|+..+......                                           +...+..+++++
T Consensus        71 ~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~  150 (408)
T d1n11a_          71 HCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAEL  150 (408)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHH
Confidence            9999999999999999876653222                                           123344456777


Q ss_pred             Hh------hccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCc
Q 048100          120 ML------GMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSA  158 (161)
Q Consensus       120 l~------~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  158 (161)
                      ++      +..+.+|.+||++|+..|+.+++++|+..|++++..+
T Consensus       151 ll~~~~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~  195 (408)
T d1n11a_         151 LLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPA  195 (408)
T ss_dssp             HHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCC
T ss_pred             HHHcCCCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccC
Confidence            65      3567789999999999999999999999998887544

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=7.9e-25  Score=152.09  Aligned_cols=133  Identities=20%  Similarity=0.215  Sum_probs=116.6

Q ss_pred             ChHHHHHHHcCChHHHHHHHhh-hCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCc
Q 048100            2 NSDLYEAAAKGVIEPFNQLAID-RQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDS   80 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t   80 (161)
                      .||||.|++.|+.+.+++|++. +..++..+..|.++++.+..++..+.      ..+++++|+++|++ ++..+..|.|
T Consensus       149 ~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~Li~~ga~-~n~~~~~g~t  221 (285)
T d1wdya_         149 ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSD------VEAITHLLLDHGAD-VNVRGERGKT  221 (285)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTT------HHHHHHHHHHTTCC-SSCCCTTSCC
T ss_pred             chHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchH------HHHHHHHHHHCCCC-CCccCCCCCC
Confidence            5799999999999999999864 67788899999999888554443333      46799999999988 5778999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHh-hhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCc
Q 048100           81 PLHVAARYGHAAVVGALIEF-AEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSA  158 (161)
Q Consensus        81 ~l~~a~~~~~~~~~~~Ll~~-g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  158 (161)
                      |||+|++.|+.+++++|++. |.+                 ++.+|.+|.||||+|++.|+.+++++|+++|+|++..+
T Consensus       222 ~L~~a~~~~~~~~v~~lL~~~g~d-----------------in~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d  283 (285)
T d1wdya_         222 PLILAVEKKHLGLVQRLLEQEHIE-----------------INDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSSSCC-----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred             ccchhhhcCcHHHHHHHHHcCCCC-----------------CcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccc
Confidence            99999999999999999985 767                 77889999999999999999999999999999998765

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.4e-24  Score=136.40  Aligned_cols=136  Identities=24%  Similarity=0.272  Sum_probs=112.4

Q ss_pred             hHHHHHHHcCChHHHHHHHhh-hCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            3 SDLYEAAAKGVIEPFNQLAID-RQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      ..|+.|+..|+++.|+.|+.. +..++..|..|+||||+|   . .+       ..+++++|++.+.+ ++..+..|.+|
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A---~-~~-------~~~~v~~Ll~~~~~-~~~~~~~~~~~   71 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM---M-FG-------STAIALELLKQGAS-PNVQDTSGTSP   71 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHS---C-TT-------CHHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcccccc---c-cc-------cccccccccccccc-ccccccccccc
Confidence            469999999999999999875 678899999999999994   3 23       37899999998887 56778889999


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhcCCch----------hhhcCchhHHHHHh-----hccCCCCCcHhHHHHHcCCHHHHHH
Q 048100           82 LHVAARYGHAAVVGALIEFAEKQPGQ----------ELESGVKSTTRYML-----GMKNDEEDTALHEAVQSGSLDVVEI  146 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~~g~~~~~~----------~~~~~~~~~~~~l~-----~~~~~~g~t~l~~a~~~~~~~~~~~  146 (161)
                      ++.++..++.+++++++++|.+.+..          +...|+.+++++|+     +.+|..|+||||+|+..|+.+++++
T Consensus        72 l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~  151 (156)
T d1bd8a_          72 VHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDI  151 (156)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTSCTTCCCTTSCCHHHHHHHSCCHHHHHH
T ss_pred             cccccccccccccccccccccccccccCCCCeeeccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHH
Confidence            99999999999999999998875443          34556666777774     5678888899999999999999988


Q ss_pred             HHhC
Q 048100          147 LLGA  150 (161)
Q Consensus       147 Ll~~  150 (161)
                      |+++
T Consensus       152 Ll~h  155 (156)
T d1bd8a_         152 LQGH  155 (156)
T ss_dssp             HHTT
T ss_pred             HHhh
Confidence            8864

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=6.7e-25  Score=147.99  Aligned_cols=147  Identities=21%  Similarity=0.183  Sum_probs=116.5

Q ss_pred             ChHHHHHHHcCChHHHH----HHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCC
Q 048100            2 NSDLYEAAAKGVIEPFN----QLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAK   77 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~----~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~   77 (161)
                      +||||.|+..|+.+.++    ++...+..++.+|..|+||||+|+   ..+       ..+++++|++.|++ ++..+..
T Consensus         3 ~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~---~~~-------~~~iv~~L~~~g~d-~~~~d~~   71 (221)
T d1iknd_           3 DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAV---ITN-------QPEIAEALLGAGCD-PELRDFR   71 (221)
T ss_dssp             CCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHH---HTT-------CHHHHHCCCSCCCC-SCCCCTT
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCccccccc---ccc-------cccccccccccccc-ccccccc
Confidence            79999999999975544    455667788999999999999954   444       48899999999988 5778999


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHhhhcCCch----------------hhhcCchhHHHHHhh-------ccCCCCCcHhHH
Q 048100           78 GDSPLHVAARYGHAAVVGALIEFAEKQPGQ----------------ELESGVKSTTRYMLG-------MKNDEEDTALHE  134 (161)
Q Consensus        78 ~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~----------------~~~~~~~~~~~~l~~-------~~~~~g~t~l~~  134 (161)
                      |.|||++++..+..++++.|+..+......                +...+...++++++.       ..+..|.||||+
T Consensus        72 g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~  151 (221)
T d1iknd_          72 GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHL  151 (221)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHH
T ss_pred             cccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCcccc
Confidence            999999999999999999999987664333                234445556666652       245679999999


Q ss_pred             HHHcCCHHHHHHHHhCCCCCCCCcC
Q 048100          135 AVQSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       135 a~~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                      |+..|+.+++++|+++|+|++.++.
T Consensus       152 A~~~g~~~~v~~Ll~~gad~~~~~~  176 (221)
T d1iknd_         152 AVDLQNPDLVSLLLKCGADVNRVTY  176 (221)
T ss_dssp             HHHTTCHHHHHHHHTTTCCSCCCCT
T ss_pred             ccccccHHHHHHHHhcCCcccccCC
Confidence            9999999999999999999987654

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.91  E-value=4e-24  Score=147.96  Aligned_cols=147  Identities=14%  Similarity=0.159  Sum_probs=116.1

Q ss_pred             ChHHHHHHHcCChHHHHHHH--------hhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhc
Q 048100            2 NSDLYEAAAKGVIEPFNQLA--------IDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQ   73 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll--------~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~   73 (161)
                      .||||+|+..|+.+.++.|+        ..|.+++.+|..|.||||+|+   ..|       +.+++++|+++|++ ++.
T Consensus        34 ~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~---~~g-------~~~iv~~Ll~~Gad-~n~  102 (277)
T d2fo1e1          34 RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAV---LAR-------RRRLVAYLMKAGAD-PTI  102 (277)
T ss_dssp             CCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHH---HHT-------CHHHHHHHHHTTCC-SCC
T ss_pred             ccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecccc---ccc-------cccccccccccccc-ccc
Confidence            48999999999999888774        456788999999999999954   445       48999999999988 577


Q ss_pred             cCCCCCcHHHHHHHhCCHHHHHHHHHhhhcC---Cch-------------------------------------------
Q 048100           74 VNAKGDSPLHVAARYGHAAVVGALIEFAEKQ---PGQ-------------------------------------------  107 (161)
Q Consensus        74 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~---~~~-------------------------------------------  107 (161)
                      .+..|.||+++|+..++.++++++...+...   ...                                           
T Consensus       103 ~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (277)
T d2fo1e1         103 YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDS  182 (277)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSS
T ss_pred             ccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccc
Confidence            8999999999999999999998887664321   111                                           


Q ss_pred             -----------hhhcCchhHHHHHh-------hccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCcC
Q 048100          108 -----------ELESGVKSTTRYML-------GMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       108 -----------~~~~~~~~~~~~l~-------~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                                 +...+..++.++++       +.+|..|+||||+|+..|+.+++++|++.|++++.++.
T Consensus       183 ~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~  252 (277)
T d2fo1e1         183 EKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDA  252 (277)
T ss_dssp             SSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCS
T ss_pred             cccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCC
Confidence                       01111222333332       46889999999999999999999999999999987654

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=2e-23  Score=146.95  Aligned_cols=152  Identities=15%  Similarity=0.123  Sum_probs=106.2

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      +||||+|+..|+++.|+.|++.+.+++.+|..|+||||+|+.   .++........++++++..    .....|..|+||
T Consensus       108 ~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~---~~~~~~~~~~~~ll~~l~~----~~~~~d~~g~t~  180 (301)
T d1sw6a_         108 NTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVK---SVNNYDSGTFEALLDYLYP----CLILEDSMNRTI  180 (301)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHH---SSHHHHTTCHHHHHHHHGG----GGGEECTTCCCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhh---cccchhhhhHHHHHHHHhh----hhhhcccccCCH
Confidence            489999999999999999999999999999999999999654   3321111112345554433    245568999999


Q ss_pred             HHHHHHhCC----HHH--------HHHHHHhhhcCCchhhhcCc--------------------hhHHHHHhhccCCCCC
Q 048100           82 LHVAARYGH----AAV--------VGALIEFAEKQPGQELESGV--------------------KSTTRYMLGMKNDEED  129 (161)
Q Consensus        82 l~~a~~~~~----~~~--------~~~Ll~~g~~~~~~~~~~~~--------------------~~~~~~l~~~~~~~g~  129 (161)
                      ||+++..+.    ...        +.+++..+..........+.                    ......+++.+|..|+
T Consensus       181 lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~  260 (301)
T d1sw6a_         181 LHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGD  260 (301)
T ss_dssp             HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSC
T ss_pred             HHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCC
Confidence            999886554    233        33444444332211100000                    0122334688999999


Q ss_pred             cHhHHHHHcCCHHHHHHHHhCCCCCCCCcCC
Q 048100          130 TALHEAVQSGSLDVVEILLGADPAFPYSANG  160 (161)
Q Consensus       130 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~  160 (161)
                      ||||+|++.|+.++|++|++.|++++.+++.
T Consensus       261 TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~  291 (301)
T d1sw6a_         261 TCLNIAARLGNISIVDALLDYGADPFIANKS  291 (301)
T ss_dssp             CHHHHHHHHCCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Confidence            9999999999999999999999999887653

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.4e-22  Score=136.71  Aligned_cols=116  Identities=17%  Similarity=0.220  Sum_probs=97.4

Q ss_pred             CCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCch------
Q 048100           34 KNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQ------  107 (161)
Q Consensus        34 g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~------  107 (161)
                      ++++++.   +++.|+       .+.++.++...+..++..|..|+||||+|+..|+.+++++|+..+......      
T Consensus         3 ~~~~~~~---~a~~G~-------~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~   72 (223)
T d1uoha_           3 SNLMVCN---LAYSGK-------LEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWS   72 (223)
T ss_dssp             SSSHHHH---HHHTTC-------HHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCC
T ss_pred             CHHHHHH---HHHhCC-------HHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccc
Confidence            4677777   556664       788988888777778899999999999999999999999999998775544      


Q ss_pred             ----hhhcCchhHHHHHh------hccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCcC
Q 048100          108 ----ELESGVKSTTRYML------GMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       108 ----~~~~~~~~~~~~l~------~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                          +...++.+++++++      +.+|..|.||||+|+..|+.+++++|+++|++++.++.
T Consensus        73 ~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~  134 (223)
T d1uoha_          73 PLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH  134 (223)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             cccccccccccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence                34566777888886      46889999999999999999999999999999876543

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.3e-22  Score=132.70  Aligned_cols=147  Identities=18%  Similarity=0.233  Sum_probs=115.7

Q ss_pred             ChHHHHHHHcCChHHHHHHHh----hhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCC
Q 048100            2 NSDLYEAAAKGVIEPFNQLAI----DRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAK   77 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~----~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~   77 (161)
                      +||||.||+.|+.+.++.|++    .+.+++.+|..|+||||+|   +..|       ..+++++|++.++. .+.....
T Consensus         4 ~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A---~~~~-------~~~iv~~Ll~~ga~-~~~~~~~   72 (228)
T d1k1aa_           4 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLA---VITT-------LPSVVRLLVTAGAS-PMALDRH   72 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHH---HHTT-------CHHHHHHHHHTTCC-TTCCCTT
T ss_pred             ccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceeh---hccc-------cccccccccccccc-ccccccc
Confidence            599999999999999998864    6778899999999999994   4555       48999999999887 4667888


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHhhhcCCch------------------------------------------------hh
Q 048100           78 GDSPLHVAARYGHAAVVGALIEFAEKQPGQ------------------------------------------------EL  109 (161)
Q Consensus        78 ~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~------------------------------------------------~~  109 (161)
                      +.++++.|...++.++++.+..........                                                +.
T Consensus        73 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~  152 (228)
T d1k1aa_          73 GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAV  152 (228)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHH
T ss_pred             cccccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHH
Confidence            999999999999998888776654322111                                                01


Q ss_pred             hcCchhHHHHHh------hccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCcC
Q 048100          110 ESGVKSTTRYML------GMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       110 ~~~~~~~~~~l~------~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                      ..+...+.+.++      ..+|..|.||||+|+..|+.+++++|+++|+|++.+++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~  208 (228)
T d1k1aa_         153 ENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNC  208 (228)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HhhhhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Confidence            122222333333      56888999999999999999999999999999987654

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=9.5e-24  Score=129.40  Aligned_cols=97  Identities=19%  Similarity=0.192  Sum_probs=88.3

Q ss_pred             CcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCch
Q 048100           35 NSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVK  114 (161)
Q Consensus        35 ~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~  114 (161)
                      .|||+|   |+..|       +.+++++|+++|++ ++..+..|+||||+|+..|+.+++++|++.|++           
T Consensus         3 ~tpL~~---A~~~g-------~~~~v~~Ll~~g~d-~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~d-----------   60 (118)
T d1myoa_           3 DKEFMW---ALKNG-------DLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-----------   60 (118)
T ss_dssp             HHHHHH---HHHTT-------CHHHHHHHHTTTCC-CCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCT-----------
T ss_pred             ChHHHH---HHHCC-------CHHHHHHHHHhhhc-cccccccccccccccccccccccccccccccce-----------
Confidence            479999   55555       48999999999988 577899999999999999999999999999998           


Q ss_pred             hHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCcC
Q 048100          115 STTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       115 ~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                            ++.+|..|+||||+|+..|+.+++++|+++|++++.+++
T Consensus        61 ------in~~d~~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~   99 (118)
T d1myoa_          61 ------INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGP   99 (118)
T ss_dssp             ------TTCCSSSCSCHHHHHHTTTCCHHHHHHHTTCCCSSSSSS
T ss_pred             ------eeecccccccchhhhhhcCchhhhhhhhcccccceeeCC
Confidence                  788899999999999999999999999999999987654

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.9e-23  Score=128.71  Aligned_cols=96  Identities=21%  Similarity=0.255  Sum_probs=86.5

Q ss_pred             cHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchh
Q 048100           36 SVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKS  115 (161)
Q Consensus        36 t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~  115 (161)
                      ++|+.   |+..|       +.+++++|+++|++ ++.+|.+|+||||+|+..++.+++++|++.|++            
T Consensus         3 ~lL~~---A~~~G-------~~~~v~~Ll~~g~d-~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~------------   59 (130)
T d1ycsb1           3 ALLLD---SSLEG-------EFDLVQRIIYEVDD-PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN------------   59 (130)
T ss_dssp             HHHHH---HHHHT-------CHHHHHHHTSTTSS-CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC------------
T ss_pred             HHHHH---HHHcC-------CHHHHHHHHHcCCC-ccccccccccccccccccccccccccccccccc------------
Confidence            56788   55555       48999999999988 578899999999999999999999999999988            


Q ss_pred             HHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCcC
Q 048100          116 TTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       116 ~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                           ++.+|.+|+||||+|+..|+.+++++|+++|++++..++
T Consensus        60 -----~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~   98 (130)
T d1ycsb1          60 -----VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTY   98 (130)
T ss_dssp             -----TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCS
T ss_pred             -----cccccccCcccccccchhhHHHHHHHHHHcCCCcccccC
Confidence                 778899999999999999999999999999999886543

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.89  E-value=1e-22  Score=140.82  Aligned_cols=131  Identities=18%  Similarity=0.134  Sum_probs=106.2

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhc-------------c--cc---------------
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQ-------------N--KE---------------   51 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~-------------~--~~---------------   51 (161)
                      +||||+|++.|+.+++++|++.+.+++.++..|.|||++|+..+...             .  ..               
T Consensus        75 ~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (277)
T d2fo1e1          75 NTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNE  154 (277)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSC
T ss_pred             CeeeccccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcc
Confidence            58999999999999999999999999999999999999976543110             0  00               


Q ss_pred             ----------------------------------------cccccHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCCH
Q 048100           52 ----------------------------------------GESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHA   91 (161)
Q Consensus        52 ----------------------------------------~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~   91 (161)
                                                              ...+..+++++++..........|..|+||||+|++.|+.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~  234 (277)
T d2fo1e1         155 GRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRI  234 (277)
T ss_dssp             STTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             cccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCH
Confidence                                                    0022345666666544444566788899999999999999


Q ss_pred             HHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHh
Q 048100           92 AVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLG  149 (161)
Q Consensus        92 ~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  149 (161)
                      +++++|+++|++                 ++.+|..|+||||+|++.|+.+++++|++
T Consensus       235 ~iv~~Ll~~gad-----------------in~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         235 EVVMYLIQQGAS-----------------VEAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             HHHHHHHHTTCC-----------------SSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHHCcCC-----------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            999999999988                 77889999999999999999999999974

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.3e-23  Score=140.40  Aligned_cols=135  Identities=15%  Similarity=0.055  Sum_probs=97.5

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcc---------c--------------------cc
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQN---------K--------------------EG   52 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~---------~--------------------~~   52 (161)
                      .||||+|+..|+.+.+++|++.+.+++..|..|.||||+++..+....         .                    ..
T Consensus        40 ~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~  119 (221)
T d1iknd_          40 QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS  119 (221)
T ss_dssp             CCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHH
T ss_pred             CccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccchhhhHHh
Confidence            589999999999999999999999999999999999999654331100         0                    00


Q ss_pred             ccccHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHh
Q 048100           53 ESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTAL  132 (161)
Q Consensus        53 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l  132 (161)
                      ..+..+++++|+..+..+....+.+|.||||+|++.|+.+++++|+++|++                 ++.+|..|+|||
T Consensus       120 ~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad-----------------~~~~~~~G~tpl  182 (221)
T d1iknd_         120 IHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-----------------VNRVTYQGYSPY  182 (221)
T ss_dssp             HTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC-----------------SCCCCTTCCCGG
T ss_pred             hcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCc-----------------ccccCCCCCCHH
Confidence            122344555555555543333345566666666666666666666666665                 577899999999


Q ss_pred             HHHHHcCCHHHHHHHHhCCCC
Q 048100          133 HEAVQSGSLDVVEILLGADPA  153 (161)
Q Consensus       133 ~~a~~~~~~~~~~~Ll~~~~~  153 (161)
                      |+|+..++.+++++|++.+.+
T Consensus       183 ~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         183 QLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             GGCTTSSCHHHHHHHHTTSCG
T ss_pred             HHHHHCCCHHHHHHHHHcCCc
Confidence            999999999999999977654

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.1e-22  Score=145.94  Aligned_cols=125  Identities=23%  Similarity=0.246  Sum_probs=100.2

Q ss_pred             hHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHH
Q 048100            3 SDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPL   82 (161)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (161)
                      +|++.|++.++.+.+++|++.+..++..+..+.||||.   +...+       ..++++++++.|.+ ++.+|.+|.|||
T Consensus       266 ~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~---~~~~~-------~~~~~~~ll~~g~~-in~~d~~G~T~L  334 (408)
T d1n11a_         266 TPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHV---ASHYG-------NIKLVKFLLQHQAD-VNAKTKLGYSPL  334 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHH---HHHSS-------CSHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred             ChhhhhhhcCcHHHHHHHHHCCCccccccccccccchh---hcccC-------cceeeeeecccccc-ccccCCCCCCHH
Confidence            57788888888888888887777777777778888888   33333       36788888888876 577788899999


Q ss_pred             HHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHH---hCCCCCC
Q 048100           83 HVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILL---GADPAFP  155 (161)
Q Consensus        83 ~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll---~~~~~~~  155 (161)
                      |+|++.|+.+++++|+++|++                 ++.+|.+|+||||+|++.|+.++|++|.   ..+++..
T Consensus       335 h~A~~~g~~~iv~~Ll~~GAd-----------------~n~~d~~G~t~L~~A~~~~~~~iv~~L~~~~~~~~~~~  393 (408)
T d1n11a_         335 HQAAQQGHTDIVTLLLKNGAS-----------------PNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVL  393 (408)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC-----------------SCCCCSSSCCHHHHHHHTTCHHHHHHHHHHCCCCSSCC
T ss_pred             HHHHHcCCHHHHHHHHHCCCC-----------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHHHhcccccc
Confidence            999999999999999999988                 7778999999999999999999998765   4444443

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=1.3e-22  Score=136.97  Aligned_cols=122  Identities=20%  Similarity=0.137  Sum_probs=109.3

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSP   81 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   81 (161)
                      .++++.++..++.+.++.|+..+...+..+..|+||||+|   +..+       ..+++++|++.+...++..|.+|+||
T Consensus       106 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a---~~~~-------~~~~~~~Ll~~~~~~in~~d~~g~Tp  175 (229)
T d1ixva_         106 VTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRA---ASVG-------SLKLIELLCGLGKSAVNWQDKQGWTP  175 (229)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHH---HHHT-------CHHHHHHHHTTTCCCSCCCCTTSCCH
T ss_pred             ccccccccccchhhhhhhhhhhcccccccCCCCCCccchh---hhcc-------cccccccccccccccccccccccCCc
Confidence            4789999999999999999999999999999999999994   4455       48899999999876678889999999


Q ss_pred             HHHHHHhCCHHHHHHHHH-hhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCC
Q 048100           82 LHVAARYGHAAVVGALIE-FAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPA  153 (161)
Q Consensus        82 l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~  153 (161)
                      ||+|+.+|+.+++++|++ .|++                 ++.+|..|+||||+|+.   .+++++|++.|+|
T Consensus       176 Lh~A~~~~~~~~v~~Ll~~~gad-----------------~~~~d~~g~t~l~~A~~---~~~~~~Ll~~g~d  228 (229)
T d1ixva_         176 LFHALAEGHGDAAVLLVEKYGAE-----------------YDLVDNKGAKAEDVALN---EQVKKFFLNNVVD  228 (229)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHCCC-----------------SCCCCTTSCCTGGGCSC---HHHHHHHHHHCCC
T ss_pred             hhhhcccccHHHHHHHHHhcCCC-----------------CCCcCCCCCCHHHHHhh---HHHHHHHHHcCCC
Confidence            999999999999999997 5888                 77889999999999884   6899999999987

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.87  E-value=1.3e-23  Score=150.62  Aligned_cols=25  Identities=20%  Similarity=0.343  Sum_probs=22.4

Q ss_pred             CCCCcHhHHHHHcCCHHHHHHHHhC
Q 048100          126 DEEDTALHEAVQSGSLDVVEILLGA  150 (161)
Q Consensus       126 ~~g~t~l~~a~~~~~~~~~~~Ll~~  150 (161)
                      .+|+||||+|++.|+.++|++|++.
T Consensus       315 ~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         315 GDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             TCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             CCCCcHHHHHHHcCcHHHHHHHhCC
Confidence            4689999999999999999999853

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.87  E-value=1.9e-24  Score=154.94  Aligned_cols=130  Identities=17%  Similarity=0.252  Sum_probs=102.6

Q ss_pred             ChHHHHHHHcCChHHHHH---HHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhc-cCCC
Q 048100            2 NSDLYEAAAKGVIEPFNQ---LAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQ-VNAK   77 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~---ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~-~~~~   77 (161)
                      .|+|+.|++.|+.+.++.   |+..+..++..|..|+||||+   |+..|       +.+++++|++.|+++... .+.+
T Consensus        91 ~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~---Aa~~G-------~~~~v~~Ll~~g~~~~~~~~~~~  160 (346)
T d2ajaa1          91 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRL---AAENG-------HLHVLNRLCELAPTEIMAMIQAE  160 (346)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHH---HHHTT-------CHHHHHHHHHSCTTTHHHHHSHH
T ss_pred             CcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHH---HHHCC-------CHHHHHHHHHcCCCccccccccC
Confidence            478999999999887765   578889999999999999999   55666       489999999999874222 2456


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCC
Q 048100           78 GDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEILLGADPAFP  155 (161)
Q Consensus        78 ~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~  155 (161)
                      |+||||+|+..|+.+++++|++.|.....              .+..+.++.||++.|+.+|+.+++++|++.|++++
T Consensus       161 g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~--------------~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~  224 (346)
T d2ajaa1         161 NYHAFRLAAENGHLHVLNRLCELAPTEAT--------------AMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA  224 (346)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHSCGGGHH--------------HHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHH
T ss_pred             CCChhHHHHHHhhHHHHHHHHHcCCcccc--------------cccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcc
Confidence            89999999999999999999999865211              23344567788888999999999999998887543

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.87  E-value=2.2e-21  Score=129.08  Aligned_cols=140  Identities=17%  Similarity=0.170  Sum_probs=100.4

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcc------------c----c--------cccccH
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQN------------K----E--------GESVST   57 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~------------~----~--------~~~~~~   57 (161)
                      +||||+||..|+.+.++.|+..+..++..+..+.++++.++.......            .    .        ......
T Consensus        24 ~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (209)
T d1ot8a_          24 ETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIE  103 (209)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCT
T ss_pred             CCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccch
Confidence            589999999999999999999999999999999999999543321100            0    0        001123


Q ss_pred             HHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHH
Q 048100           58 KFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQ  137 (161)
Q Consensus        58 ~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~  137 (161)
                      ...+.|...+.+ ++..+..|+||+++++..+..++++.+++.+.+                 ++..|..|.||||+|+.
T Consensus       104 ~~~~~L~~~~~~-~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~-----------------~~~~d~~g~TpL~~A~~  165 (209)
T d1ot8a_         104 GMVEDLITADAD-INAADNSGKTALHWAAAVNNTEAVNILLMHHAN-----------------RDAQDDKDETPLFLAAR  165 (209)
T ss_dssp             THHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-----------------TTCCCTTCCCHHHHHHH
T ss_pred             hhhhhhhhhccc-ccccCCCCCCcchhhcccCcceeeeeecccccc-----------------ccccccccccccchhcc
Confidence            445666666555 355677777888888888888888888877776                 55667777777777777


Q ss_pred             cCCHHHHHHHHhCCCCCCCCcC
Q 048100          138 SGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       138 ~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                      .|+.+++++|+++|+|++..+.
T Consensus       166 ~g~~~~v~~Ll~~gad~n~~d~  187 (209)
T d1ot8a_         166 EGSYEASKALLDNFANREITDH  187 (209)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCT
T ss_pred             ccHHHHHHHHHHCCCCCCCcCC
Confidence            7777777777777777665543

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=9.2e-21  Score=131.31  Aligned_cols=148  Identities=21%  Similarity=0.209  Sum_probs=111.0

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCcccccc-CCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccc----------
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVI-HKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSL----------   70 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~----------   70 (161)
                      +|.|+.|++.|+++.|+.|++.|.+++.++ ..|.||||+|+   ..|+       .+++++|++.+...          
T Consensus         6 ~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~---~~~~-------~eiv~~L~~~~~~~~~~~~~~~~~   75 (285)
T d1wdya_           6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAV---QMSR-------EDIVELLLRHGADPVLRKKNGATP   75 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHH---HTTC-------HHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHH---HcCC-------HHHhhhhccccccccccccccchh
Confidence            478999999999999999999999988765 47999999954   4442       56666666543310          


Q ss_pred             -----------------------------------------------------------------hhccCCCCCcHHHHH
Q 048100           71 -----------------------------------------------------------------LLQVNAKGDSPLHVA   85 (161)
Q Consensus        71 -----------------------------------------------------------------~~~~~~~~~t~l~~a   85 (161)
                                                                                       .......|.||||+|
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A  155 (285)
T d1wdya_          76 FLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA  155 (285)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHH
T ss_pred             hHHHhhcCCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHH
Confidence                                                                             001134588999999


Q ss_pred             HHhCCHHHHHHHHHh-hhcCCch--------------hhhcCchhHHHHHh------hccCCCCCcHhHHHHHcCCHHHH
Q 048100           86 ARYGHAAVVGALIEF-AEKQPGQ--------------ELESGVKSTTRYML------GMKNDEEDTALHEAVQSGSLDVV  144 (161)
Q Consensus        86 ~~~~~~~~~~~Ll~~-g~~~~~~--------------~~~~~~~~~~~~l~------~~~~~~g~t~l~~a~~~~~~~~~  144 (161)
                      +++|+.+++++|++. |++....              +...+...++++|+      +.++..|.||||+|+..|+.+++
T Consensus       156 ~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v  235 (285)
T d1wdya_         156 AEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLV  235 (285)
T ss_dssp             HHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHH
Confidence            999999999999975 5554333              12223334677776      46788999999999999999999


Q ss_pred             HHHHh-CCCCCCCCcC
Q 048100          145 EILLG-ADPAFPYSAN  159 (161)
Q Consensus       145 ~~Ll~-~~~~~~~~~~  159 (161)
                      ++|++ .|++++.++.
T Consensus       236 ~~lL~~~g~din~~d~  251 (285)
T d1wdya_         236 QRLLEQEHIEINDTDS  251 (285)
T ss_dssp             HHHHHSSSCCTTCCCT
T ss_pred             HHHHHcCCCCCcCCCC
Confidence            99997 5888886653

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.85  E-value=2.1e-20  Score=124.29  Aligned_cols=117  Identities=19%  Similarity=0.168  Sum_probs=103.2

Q ss_pred             hHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHH
Q 048100            3 SDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPL   82 (161)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l   82 (161)
                      +..+.+.........+.|...+...+..+..|.|||+++   +..+       ..++++.+++.+.+ ++..|..|.|||
T Consensus        92 ~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~---~~~~-------~~~~~~~l~~~~~~-~~~~d~~g~TpL  160 (209)
T d1ot8a_          92 TPLILAARLAIEGMVEDLITADADINAADNSGKTALHWA---AAVN-------NTEAVNILLMHHAN-RDAQDDKDETPL  160 (209)
T ss_dssp             CHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHH---HHTT-------CHHHHHHHHHTTCC-TTCCCTTCCCHH
T ss_pred             ccccccccccchhhhhhhhhhcccccccCCCCCCcchhh---cccC-------cceeeeeecccccc-cccccccccccc
Confidence            456667777788888888888888889999999999994   4444       47899999999887 577799999999


Q ss_pred             HHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHHHH
Q 048100           83 HVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVEIL  147 (161)
Q Consensus        83 ~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~~L  147 (161)
                      |+|+..|+.+++++|+++|++                 ++.+|..|+||||+|++.|+.++|++|
T Consensus       161 ~~A~~~g~~~~v~~Ll~~gad-----------------~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         161 FLAAREGSYEASKALLDNFAN-----------------REITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC-----------------TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             chhccccHHHHHHHHHHCCCC-----------------CCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            999999999999999999998                 778899999999999999999999987

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=1.3e-19  Score=115.49  Aligned_cols=91  Identities=20%  Similarity=0.217  Sum_probs=82.1

Q ss_pred             ChHHHHHHHc---CChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCC
Q 048100            2 NSDLYEAAAK---GVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKG   78 (161)
Q Consensus         2 ~~~l~~A~~~---g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~   78 (161)
                      +||||.|++.   |+.+++++|++.+.+++.+|..|.||||+   ++..|       ..+++++|+++|++ ++..|..|
T Consensus        46 ~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~---A~~~~-------~~~~v~~Ll~~gad-~~~~d~~g  114 (154)
T d1dcqa1          46 ETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY---CCLTD-------NAECLKLLLRGKAS-IEIANESG  114 (154)
T ss_dssp             CBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHH---HHHTT-------CHHHHHHHHHTTCC-TTCCCTTS
T ss_pred             CchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccccc---ccccc-------cccccccccccCcc-ccccCCCC
Confidence            4899999985   67899999999999999999999999999   45555       48999999999988 57889999


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHhhhc
Q 048100           79 DSPLHVAARYGHAAVVGALIEFAEK  103 (161)
Q Consensus        79 ~t~l~~a~~~~~~~~~~~Ll~~g~~  103 (161)
                      .||||+|++.|+.+++++|++.++.
T Consensus       115 ~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1         115 ETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            9999999999999999999998865

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=5.8e-19  Score=111.96  Aligned_cols=113  Identities=22%  Similarity=0.298  Sum_probs=91.0

Q ss_pred             CcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCch-------
Q 048100           35 NSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQ-------  107 (161)
Q Consensus        35 ~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-------  107 (161)
                      .||||.|   ++.|       +.+++++|+++|++. + .+..|+||||+|++.++.++++.++.........       
T Consensus         3 ~t~L~~A---a~~g-------~~~~v~~LL~~ga~~-~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (153)
T d1awcb_           3 GKKLLEA---ARAG-------QDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTP   70 (153)
T ss_dssp             HHHHHHH---HHHT-------CHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCH
T ss_pred             CHHHHHH---HHCC-------CHHHHHHHHHcCCCc-c-cccCCCccccccccccccccccccccccccccccccccccc
Confidence            4899995   4555       489999999999864 3 6899999999999999999999999887664433       


Q ss_pred             ---hhhcCchhHHHHHh------hccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCcC
Q 048100          108 ---ELESGVKSTTRYML------GMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       108 ---~~~~~~~~~~~~l~------~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                         +......+++++++      +.++..|+||||+|+..|+.+++++|+++|++++.+++
T Consensus        71 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~  131 (153)
T d1awcb_          71 LHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSK  131 (153)
T ss_dssp             HHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             cccccccccceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCC
Confidence               12333334555553      56889999999999999999999999999999987654

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=8.1e-20  Score=112.69  Aligned_cols=98  Identities=20%  Similarity=0.217  Sum_probs=84.1

Q ss_pred             CCcHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCc
Q 048100           34 KNSVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGV  113 (161)
Q Consensus        34 g~t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~  113 (161)
                      +.++||+   |+..|       +.+++++|+++|++ ++..+..|.||+|.|+ .|+.+++++|+++|++          
T Consensus         3 ~~~~L~~---Aa~~G-------~~~~v~~Ll~~gad-~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~----------   60 (125)
T d1bi7b_           3 SADWLAT---AAARG-------RVEEVRALLEAGAN-PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE----------   60 (125)
T ss_dssp             STTHHHH---HHHHT-------CHHHHHHHHTTTCC-TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC----------
T ss_pred             ChhHHHH---HHHCC-------CHHHHHHHHHcCCc-cccccccccccccccc-cccccccccccccccc----------
Confidence            5689999   45555       48999999999987 5788999999999775 6999999999999998          


Q ss_pred             hhHHHHHhhccCCCCC-cHhHHHHHcCCHHHHHHHHhCCCCCCCCcCC
Q 048100          114 KSTTRYMLGMKNDEED-TALHEAVQSGSLDVVEILLGADPAFPYSANG  160 (161)
Q Consensus       114 ~~~~~~l~~~~~~~g~-t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~  160 (161)
                             ++.++..+. ||||+|++.|+.+++++|+++|++++.++..
T Consensus        61 -------~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~  101 (125)
T d1bi7b_          61 -------PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAW  101 (125)
T ss_dssp             -------CCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTT
T ss_pred             -------cccccccccccccccccccccccccccccccccccccccCC
Confidence                   666677665 6999999999999999999999999877643

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.79  E-value=1.3e-19  Score=125.99  Aligned_cols=72  Identities=24%  Similarity=0.295  Sum_probs=50.0

Q ss_pred             cHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHH
Q 048100           56 STKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEA  135 (161)
Q Consensus        56 ~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a  135 (161)
                      ..+++++|++.|++ ++..+..|+||||+|+..|+.+++++|+++|++                 ++.+|..|+||||+|
T Consensus       211 ~~~~~~~Ll~~g~d-in~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gad-----------------v~~~d~~G~TaL~~A  272 (291)
T d1s70b_         211 YTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVENLCD-----------------MEAVNKVGQTAFDVA  272 (291)
T ss_dssp             CHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----------------TTCCCTTSCCTTTSC
T ss_pred             Chhhhcccccceec-ccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC-----------------CCCcCCCCCCHHHHH
Confidence            35566666666655 355566666666666666666666666666666                 577899999999999


Q ss_pred             HHcCCHHHHHHHHh
Q 048100          136 VQSGSLDVVEILLG  149 (161)
Q Consensus       136 ~~~~~~~~~~~Ll~  149 (161)
                      ++    +++++|.+
T Consensus       273 ~e----~~~~~L~~  282 (291)
T d1s70b_         273 DE----DILGYLEE  282 (291)
T ss_dssp             CS----GGGHHHHH
T ss_pred             HH----HHHHHHHH
Confidence            75    56666664

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.8e-19  Score=119.77  Aligned_cols=126  Identities=20%  Similarity=0.170  Sum_probs=97.4

Q ss_pred             ChHHHHHHHcCChHHHHHHHhhhCccccccCCCCcHHHHHHHHhhh---------cc-----cc----------------
Q 048100            2 NSDLYEAAAKGVIEPFNQLAIDRQLGSLVIHKKNSVLHVNIIASYT---------QN-----KE----------------   51 (161)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~l~~a~~a~~~---------~~-----~~----------------   51 (161)
                      .||||.|+..|+.++++.|++.+...+..+..|.++++.|......         ..     ..                
T Consensus        41 ~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  120 (228)
T d1k1aa_          41 QTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT  120 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHH
T ss_pred             Cccceehhcccccccccccccccccccccccccccccccccccccccchhhhhhcccccccccccccccccccccccccc
Confidence            4899999999999999999999888888888888888875332110         00     00                


Q ss_pred             -------------------------------cccccHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHh
Q 048100           52 -------------------------------GESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEF  100 (161)
Q Consensus        52 -------------------------------~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  100 (161)
                                                     ...+...+++++++.+.. ....+..|.||||+|+..|+.+++++|+++
T Consensus       121 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~  199 (228)
T d1k1aa_         121 ECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVRS  199 (228)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHT
T ss_pred             ccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhccc-cccccccCcchHHHHHHcCCHHHHHHHHHC
Confidence                                           002345566777776665 456678888999999999999999999988


Q ss_pred             hhcCCchhhhcCchhHHHHHhhccCCCCCcHhHHHHHcCCHHHHH
Q 048100          101 AEKQPGQELESGVKSTTRYMLGMKNDEEDTALHEAVQSGSLDVVE  145 (161)
Q Consensus       101 g~~~~~~~~~~~~~~~~~~l~~~~~~~g~t~l~~a~~~~~~~~~~  145 (161)
                      |++                 ++.+|..|+||||+|++.|+.+++|
T Consensus       200 Gad-----------------~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         200 GAD-----------------SSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             TCC-----------------TTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             CCC-----------------CCCCCCCCCCHHHHHHhCCCccccC
Confidence            888                 7778999999999999999998875

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.2e-17  Score=106.01  Aligned_cols=112  Identities=19%  Similarity=0.247  Sum_probs=90.7

Q ss_pred             cHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCch--------
Q 048100           36 SVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQ--------  107 (161)
Q Consensus        36 t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~--------  107 (161)
                      ++||+|   +..|       ..+++++|+++|++ ++..|..|.||||+|+ .++.+++++|++.|++....        
T Consensus         3 ~~Lh~A---a~~g-------~~~~v~~Ll~~g~d-~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l   70 (156)
T d1ihba_           3 NELASA---AARG-------DLEQLTSLLQNNVN-VNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVI   70 (156)
T ss_dssp             HHHHHH---HHHT-------CHHHHHHHTTSCCC-TTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             HHHHHH---HHcC-------CHHHHHHHHHCCCC-cCccCCcccccccccc-cccccccccccccccccccccccCcccc
Confidence            789995   4555       48999999999998 5788999999999886 78999999999999886555        


Q ss_pred             --hhhcCchhHHHHHh------hccCCCCCcHhHHHHHcCCHHHHHHHHhCCC-CCCCCcC
Q 048100          108 --ELESGVKSTTRYML------GMKNDEEDTALHEAVQSGSLDVVEILLGADP-AFPYSAN  159 (161)
Q Consensus       108 --~~~~~~~~~~~~l~------~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~-~~~~~~~  159 (161)
                        +...+...+.+.++      +..+..|.+|+++|+..++.+++++|++.++ +++.+++
T Consensus        71 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~  131 (156)
T d1ihba_          71 HDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNH  131 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence              23444455566664      5678999999999999999999999998876 5555443

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=8.3e-17  Score=102.39  Aligned_cols=112  Identities=20%  Similarity=0.214  Sum_probs=88.3

Q ss_pred             cHHHHHHHHhhhcccccccccHHHHHHHHHhCccchhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCch--------
Q 048100           36 SVLHVNIIASYTQNKEGESVSTKFVELVLETCPSLLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQ--------  107 (161)
Q Consensus        36 t~l~~a~~a~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~--------  107 (161)
                      +.|+.|   +..|       +.++|++|++.+...++..|..|+||||+|+ .++.+++++|++.+.+.+..        
T Consensus         4 ~~L~~A---a~~g-------~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l   72 (156)
T d1bd8a_           4 DRLSGA---AARG-------DVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPV   72 (156)
T ss_dssp             HHHHHH---HHHT-------CHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             HHHHHH---HHcC-------CHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccccccccccccccc
Confidence            347884   4445       4899999999755447888999999999987 48899999999999886555        


Q ss_pred             --hhhcCchhHHHHHh------hccCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCcC
Q 048100          108 --ELESGVKSTTRYML------GMKNDEEDTALHEAVQSGSLDVVEILLGADPAFPYSAN  159 (161)
Q Consensus       108 --~~~~~~~~~~~~l~------~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  159 (161)
                        +...+..++.++++      +.+|..|+||||+|+..|+.+++++|+ .|++++.++.
T Consensus        73 ~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~  131 (156)
T d1bd8a_          73 HDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDA  131 (156)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCT
T ss_pred             ccccccccccccccccccccccccccCCCCeeecccccccccccccccc-ccccccccCC
Confidence              24455555677765      577889999999999999999999887 6777776543

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=5.3e-16  Score=108.54  Aligned_cols=118  Identities=19%  Similarity=0.177  Sum_probs=78.1

Q ss_pred             ChHHHHHHHcCCh---HHHHHHHhh-hCccccccCCCCcHHHHHHHHhhhcccc-c-ccccHHHHHHHHHhCcc------
Q 048100            2 NSDLYEAAAKGVI---EPFNQLAID-RQLGSLVIHKKNSVLHVNIIASYTQNKE-G-ESVSTKFVELVLETCPS------   69 (161)
Q Consensus         2 ~~~l~~A~~~g~~---~~v~~ll~~-~~~~~~~~~~g~t~l~~a~~a~~~~~~~-~-~~~~~~~v~~Ll~~~~~------   69 (161)
                      .||||.|+..++.   ..+..+++. .......|..|+||||+++..+...... . +.....++.++...+..      
T Consensus       141 ~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  220 (301)
T d1sw6a_         141 ESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGT  220 (301)
T ss_dssp             CCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-
T ss_pred             ccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhccc
Confidence            5899999987642   112222211 2345667899999999976544321100 0 00001122233332221      


Q ss_pred             ------------------------------chhccCCCCCcHHHHHHHhCCHHHHHHHHHhhhcCCchhhhcCchhHHHH
Q 048100           70 ------------------------------LLLQVNAKGDSPLHVAARYGHAAVVGALIEFAEKQPGQELESGVKSTTRY  119 (161)
Q Consensus        70 ------------------------------~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~  119 (161)
                                                    .++.+|.+|+||||+|++.|+.+++++|++.|++                
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd----------------  284 (301)
T d1sw6a_         221 NEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD----------------  284 (301)
T ss_dssp             ---------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCC----------------
T ss_pred             ccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----------------
Confidence                                          1356789999999999999999999999999999                


Q ss_pred             HhhccCCCCCcHhHHHH
Q 048100          120 MLGMKNDEEDTALHEAV  136 (161)
Q Consensus       120 l~~~~~~~g~t~l~~a~  136 (161)
                       ++.+|..|+|||++|+
T Consensus       285 -~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         285 -PFIANKSGLRPVDFGA  300 (301)
T ss_dssp             -TTCCCTTSCCGGGGTC
T ss_pred             -CCCCCCCCCCHHHHcC
Confidence             8889999999999985