Citrus Sinensis ID: 048111

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300----
WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYATPKELDLFTAAIDRWDMSCMDQLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLGMDSVVTKEAFDWVSEKPRIIRASTIIGRLVNDIKSHKFEQERGHPASAIECYMKEKEREGVSVTQQEVHEELYKKVGDAWKDINEECLMPTEVPRALLMRVLNLSRVIDIIYKEADDYTHVGQVMKDNIASVLIHPVAI
ccccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHEEEHHHHHHHHHHHHHccccccHHHHHHccccHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccc
HHHHHcHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcHHHcHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHccccccHEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHEEccccc
wwkdlnfagklpfardrvVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYdvyatpkeLDLFTAAIDRwdmscmdqLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHgyhdeskwfhnnyvptMEEYMRVSLVTSAYSMLTAASFLGMDSVVTKEAFdwvsekpriiRASTIIGRLVndikshkfeqerghpasaIECYMKekeregvsvTQQEVHEELYKKVGDAWKDineeclmpteVPRALLMRVLNLSRVIDIIYKEaddythvgqVMKDNIAsvlihpvai
wwkdlnfagklpfardrvvESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYATPKELDLFTAAIDRWDMSCMDQLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLGMDSVVTKEAfdwvsekpriirastiigrLVNDIKshkfeqerghpasAIECYMKEKEREGVSVTQQEVHEELYKKVGDAWKDINEECLMPTEVPRALLMRVLNLSRVIDIIYKEADDYTHVGQVMKDNIASVLIHPVAI
WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYATPKELDLFTAAIDRWDMSCMDQLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLGMDSVVTKEAFDWVSEKPRIIRASTIIGRLVNDIKSHKFEQERGHPASAIECYMKEKEREGVSVTQQEVHEELYKKVGDAWKDINEECLMPTEVPRALLMRVLNLSRVIDIIYKEADDYTHVGQVMKDNIASVLIHPVAI
*WKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYATPKELDLFTAAIDRWDMSCMDQLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLGMDSVVTKEAFDWVSEKPRIIRASTIIGRLVNDIKSH************IECY**************EVHEELYKKVGDAWKDINEECLMPTEVPRALLMRVLNLSRVIDIIYKEADDYTHVGQVMKDNIASVLIHP***
WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYATPKELDLFTAAIDRWDMSCMDQLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLGMDSVVTKEAFDWVSEKPRIIRASTIIGRLVNDIKSHKFEQE*GHPASAIECYMKEKEREGVSVTQQEVHEELYKKVGDAWKDINEECLMPTEVPRALLMRVLNLSRVIDIIYKEADDYTHVGQVMKDNIASVLIHPVAI
WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYATPKELDLFTAAIDRWDMSCMDQLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLGMDSVVTKEAFDWVSEKPRIIRASTIIGRLVNDIKSHKFEQERGHPASAIECYMKEK**********EVHEELYKKVGDAWKDINEECLMPTEVPRALLMRVLNLSRVIDIIYKEADDYTHVGQVMKDNIASVLIHPVAI
WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYATPKELDLFTAAIDRWDMSCMDQLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLGMDSVVTKEAFDWVSEKPRIIRASTIIGRLVNDIKSHKFEQERGHPASAIECYMKEKEREGVSVTQQEVHEELYKKVGDAWKDINEECLMPTEVPRALLMRVLNLSRVIDIIYKEADDYTHVGQVMKDNIASVLIHPVAI
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
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WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYATPKELDLFTAAIDRWDMSCMDQLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLGMDSVVTKEAFDWVSEKPRIIRASTIIGRLVNDIKSHKFEQERGHPASAIECYMKEKEREGVSVTQQEVHEELYKKVGDAWKDINEECLMPTEVPRALLMRVLNLSRVIDIIYKEADDYTHVGQVMKDNIASVLIHPVAI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query304 2.2.26 [Sep-21-2011]
Q6Q3H3557 (-)-germacrene D synthase yes no 0.983 0.536 0.615 1e-110
F6M8H7562 Probable sesquiterpene sy N/A no 0.983 0.532 0.601 1e-110
B5A435559 Sesquiterpene synthase OS N/A no 0.983 0.534 0.601 1e-109
F6M8H4559 Probable sesquiterpene sy N/A no 0.983 0.534 0.601 1e-109
F6M8H5562 Probable sesquiterpene sy N/A no 0.983 0.532 0.595 1e-108
E3W208562 Sesquiterpene synthase OS N/A no 0.983 0.532 0.592 1e-107
F6M8H6562 Probable sesquiterpene sy N/A no 0.983 0.532 0.585 1e-106
E3W207559 Sesquiterpene synthase OS N/A no 0.983 0.534 0.585 1e-105
Q6Q3H2556 Valencene synthase OS=Vit no no 0.976 0.534 0.576 1e-100
Q43714555 (+)-delta-cadinene syntha N/A no 0.983 0.538 0.546 7e-96
>sp|Q6Q3H3|TPSGD_VITVI (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1 Back     alignment and function desciption
 Score =  398 bits (1023), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 187/304 (61%), Positives = 237/304 (77%), Gaps = 5/304 (1%)

Query: 1   WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYAT 60
           WWKDL+FA KLPFARDRVVE YFWI+GVYFEP++  AR++L K+ +MTSIID IYDVY T
Sbjct: 259 WWKDLDFAHKLPFARDRVVECYFWILGVYFEPQFFFARRILTKVIAMTSIIDDIYDVYGT 318

Query: 61  PKELDLFTAAIDRWDMSCMDQLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEM 120
            +EL+LFT A++RWD+S +DQLPEYM++ Y+ALL +Y EIEEE+A +G SYR++YAKE M
Sbjct: 319 LEELELFTEAVERWDISAIDQLPEYMRVCYQALLYVYSEIEEEMAKEGRSYRLYYAKEAM 378

Query: 121 KILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLGMDSVVTKEAFDWVSE 180
           K  V  Y++E+KW     +PTMEEYM V+LVTSAYSML   SF+GM   VTKE+FDW+  
Sbjct: 379 KNQVRAYYEEAKWLQVQQIPTMEEYMPVALVTSAYSMLATTSFVGMGDAVTKESFDWIFS 438

Query: 181 KPRIIRASTIIGRLVNDIKSHKFEQERGHPASAIECYMKEKEREGVSVTQQEVHEELYKK 240
           KP+I+RAS I+ RL++D+  HKFEQ+RGH ASA+ECYMK+        ++QE   E  + 
Sbjct: 439 KPKIVRASAIVCRLMDDMVFHKFEQKRGHVASAVECYMKQH-----GASEQETPNEFPQP 493

Query: 241 VGDAWKDINEECLMPTEVPRALLMRVLNLSRVIDIIYKEADDYTHVGQVMKDNIASVLIH 300
           V +AWKDINEECL+PT VP  +LMRVLNL+RVID+IYK  D YTH G V+KD + S+LI 
Sbjct: 494 VREAWKDINEECLIPTAVPMPILMRVLNLARVIDVIYKNEDGYTHFGAVLKDFVTSMLID 553

Query: 301 PVAI 304
           PV I
Sbjct: 554 PVPI 557
Involved in the biosynthesis of germacrene D. Can use farnesyl diphosphate as substrate, but not geranyl diphosphate or geranylgeranyl diphosphate. Produces mainly (-)-germacrene D along with gamma-cadinene.
Vitis vinifera (taxid: 29760)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 7EC: 5
>sp|F6M8H7|SMST_SANMU Probable sesquiterpene synthase OS=Santalum murrayanum GN=STPS PE=3 SV=1 Back     alignment and function description
>sp|B5A435|STPS1_SANAL Sesquiterpene synthase OS=Santalum album PE=1 SV=1 Back     alignment and function description
>sp|F6M8H4|SAST_SANAL Probable sesquiterpene synthase OS=Santalum album GN=SesquiTPS1 PE=3 SV=1 Back     alignment and function description
>sp|F6M8H5|SAUST_SANAS Probable sesquiterpene synthase OS=Santalum austrocaledonicum GN=SesquiTPS PE=3 SV=1 Back     alignment and function description
>sp|E3W208|SPISS_SANSP Sesquiterpene synthase OS=Santalum spicatum PE=2 SV=1 Back     alignment and function description
>sp|F6M8H6|SPIST_SANSP Probable sesquiterpene synthase OS=Santalum spicatum GN=SesquiTPS PE=3 SV=1 Back     alignment and function description
>sp|E3W207|SAUSS_SANAS Sesquiterpene synthase OS=Santalum austrocaledonicum PE=2 SV=1 Back     alignment and function description
>sp|Q6Q3H2|TPSVS_VITVI Valencene synthase OS=Vitis vinifera GN=ValCS PE=1 SV=1 Back     alignment and function description
>sp|Q43714|DCS3_GOSAR (+)-delta-cadinene synthase isozyme A OS=Gossypium arboreum GN=CAD1-A PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query304
315134533 556 sesquiterpene synthase [Toona sinensis] 0.983 0.537 0.720 1e-131
392306394 556 sesquiterpene synthase [Toona sinensis] 0.983 0.537 0.713 1e-131
224133712 553 predicted protein [Populus trichocarpa] 0.983 0.540 0.661 1e-121
224125898 554 predicted protein [Populus trichocarpa] 0.983 0.539 0.644 1e-119
359493937 557 PREDICTED: (-)-germacrene D synthase [Vi 0.983 0.536 0.628 1e-112
147828675 557 hypothetical protein VITISV_013313 [Viti 0.983 0.536 0.628 1e-112
147856860 557 hypothetical protein VITISV_030783 [Viti 0.983 0.536 0.625 1e-111
347664489 557 (E)-beta-caryophyllene synthase [Vitis v 0.983 0.536 0.615 1e-109
75223414 557 RecName: Full=(-)-germacrene D synthase 0.983 0.536 0.615 1e-108
408407799 562 RecName: Full=Probable sesquiterpene syn 0.983 0.532 0.601 1e-108
>gi|315134533|dbj|BAJ46125.1| sesquiterpene synthase [Toona sinensis] Back     alignment and taxonomy information
 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 219/304 (72%), Positives = 263/304 (86%), Gaps = 5/304 (1%)

Query: 1   WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYAT 60
           WWK+L+ A KLPFARDR+VE YFWI+GVY+EP+YSLARK+L KI +M SIID IYDVY T
Sbjct: 258 WWKELDLANKLPFARDRLVECYFWIIGVYYEPQYSLARKILTKIIAMASIIDDIYDVYGT 317

Query: 61  PKELDLFTAAIDRWDMSCMDQLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEM 120
            +EL+LFT AI+RWD SCMD LPEYMQIFYEALLDLY EIE+E+A +GWSYRVHYAKE M
Sbjct: 318 REELNLFTDAIERWDASCMDLLPEYMQIFYEALLDLYNEIEKEIAKEGWSYRVHYAKEAM 377

Query: 121 KILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLGMDSVVTKEAFDWVSE 180
           KILV GYHDESKWFHNNY+PTMEEYMRV+LVTSAY+MLT +SFLGMD++VTKE FDWV  
Sbjct: 378 KILVRGYHDESKWFHNNYIPTMEEYMRVALVTSAYTMLTTSSFLGMDNIVTKETFDWVFS 437

Query: 181 KPRIIRASTIIGRLVNDIKSHKFEQERGHPASAIECYMKEKEREGVSVTQQEVHEELYKK 240
            P+IIRAS  I RL++D+KSHKFEQERGH ASA+ECYM   E+ GVS  +QEV +E Y++
Sbjct: 438 GPKIIRASETISRLMDDVKSHKFEQERGHAASAVECYM---EQHGVS--EQEVCKEFYQQ 492

Query: 241 VGDAWKDINEECLMPTEVPRALLMRVLNLSRVIDIIYKEADDYTHVGQVMKDNIASVLIH 300
           VG+AWKDIN++ L PT+VP  +LMRVLNL+RVID++YKE D YTHVG+VMK+N+AS+LI 
Sbjct: 493 VGNAWKDINQDFLKPTDVPMTILMRVLNLARVIDVVYKEGDGYTHVGKVMKENVASLLID 552

Query: 301 PVAI 304
           P+ +
Sbjct: 553 PIPV 556

Source: Toona sinensis

Species: Toona sinensis

Genus: Toona

Family: Meliaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|392306394|dbj|BAM24405.1| sesquiterpene synthase [Toona sinensis] Back     alignment and taxonomy information
>gi|224133712|ref|XP_002321642.1| predicted protein [Populus trichocarpa] gi|222868638|gb|EEF05769.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224125898|ref|XP_002329744.1| predicted protein [Populus trichocarpa] gi|222870652|gb|EEF07783.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359493937|ref|XP_003634696.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] gi|302143188|emb|CBI20483.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147828675|emb|CAN68620.1| hypothetical protein VITISV_013313 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147856860|emb|CAN83470.1| hypothetical protein VITISV_030783 [Vitis vinifera] Back     alignment and taxonomy information
>gi|347664489|gb|AEP17005.1| (E)-beta-caryophyllene synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|75223414|sp|Q6Q3H3.1|TPSGD_VITVI RecName: Full=(-)-germacrene D synthase gi|45478053|gb|AAS66357.1| (-)-germacrene D synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|408407799|sp|F6M8H7.1|SMST_SANMU RecName: Full=Probable sesquiterpene synthase; Short=SmSTPS gi|333411345|gb|AEF32537.1| putative sesquiterpene synthase [Santalum murrayanum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query304
UNIPROTKB|B5A435559 B5A435 "Sesquiterpene synthase 0.983 0.534 0.601 3.8e-101
UNIPROTKB|J7LMP2565 J7LMP2 "Bicyclogermacrene synt 0.983 0.529 0.486 2.6e-79
UNIPROTKB|B3TPQ6550 B3TPQ6 "Beta-cubebene synthase 0.983 0.543 0.470 2.1e-77
UNIPROTKB|J7LJN5555 J7LJN5 "Beta-caryophyllene syn 0.963 0.527 0.498 2.7e-75
UNIPROTKB|B2KSJ5571 B2KSJ5 "(+)-gamma-cadinene syn 0.976 0.520 0.491 5.7e-75
UNIPROTKB|Q49SP4545 Q49SP4 "Germacrene D synthase 0.976 0.544 0.468 4e-74
UNIPROTKB|J7LP58564 J7LP58 "Alpha-copaene/delta-ca 0.976 0.526 0.437 7.5e-73
UNIPROTKB|Q49SP5554 Q49SP5 "Germacrene A synthase" 0.980 0.537 0.464 7.7e-71
UNIPROTKB|Q49SP6554 Q49SP6 "Germacrene D synthase 0.976 0.536 0.448 7e-70
UNIPROTKB|B2KSJ6560 B2KSJ6 "Alpha-farnesene syntha 0.967 0.525 0.457 1.4e-69
UNIPROTKB|B5A435 B5A435 "Sesquiterpene synthase" [Santalum album (taxid:35974)] Back     alignment and assigned GO terms
 Score = 1003 (358.1 bits), Expect = 3.8e-101, P = 3.8e-101
 Identities = 183/304 (60%), Positives = 232/304 (76%)

Query:     1 WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYAT 60
             WWK L+FA K PFARDR+VE YFW++GVYFEP+YSLARK++ K+F+M S ID IYD Y T
Sbjct:   261 WWKSLDFAAKFPFARDRLVEGYFWVLGVYFEPQYSLARKIIIKVFTMISTIDDIYDAYGT 320

Query:    61 PKELDLFTAAIDRWDMSCMDQLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEM 120
               EL+LFT A+ RWD+  +DQLPEYM+  Y+++LD+Y EIEEE+  +G  +R+HYAKE M
Sbjct:   321 LDELELFTKAMQRWDVGSLDQLPEYMKPCYKSILDVYNEIEEEMDNQGSLFRMHYAKEVM 380

Query:   121 KILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLGMDSVVTKEAFDWVSE 180
             K LV GY DE+KW H  YVPT EEYM V+LVTS Y+ LT  S+LGM  + +KEAFDW+  
Sbjct:   381 KKLVEGYMDEAKWCHEKYVPTFEEYMPVALVTSGYTFLTTISYLGMGEIASKEAFDWLFS 440

Query:   181 KPRIIRASTIIGRLVNDIKSHKFEQERGHPASAIECYMKEKEREGVSVTQQEVHEELYKK 240
              P +I AS  + RL++D++SHKFEQERGH AS IECYMK+       VT++E H+E  K+
Sbjct:   441 HPPVIEASESVCRLMDDMRSHKFEQERGHVASGIECYMKQ-----YGVTEEEAHDEFRKQ 495

Query:   241 VGDAWKDINEECLMPTEVPRALLMRVLNLSRVIDIIYKEADDYTHVGQVMKDNIASVLIH 300
             +  AWKDINEECL P  VP+ LLMR+LNL+RVID+IYK  D YTHV + MKDNIAS+LI 
Sbjct:   496 LVKAWKDINEECLRPYRVPKPLLMRILNLTRVIDVIYKNEDGYTHVKKAMKDNIASLLID 555

Query:   301 PVAI 304
             P+ +
Sbjct:   556 PMIV 559
GO:0010334 "sesquiterpene synthase activity" evidence=IDA
GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA
UNIPROTKB|J7LMP2 J7LMP2 "Bicyclogermacrene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|B3TPQ6 B3TPQ6 "Beta-cubebene synthase" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
UNIPROTKB|J7LJN5 J7LJN5 "Beta-caryophyllene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|B2KSJ5 B2KSJ5 "(+)-gamma-cadinene synthase" [Cucumis melo (taxid:3656)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP4 Q49SP4 "Germacrene D synthase 1" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
UNIPROTKB|J7LP58 J7LP58 "Alpha-copaene/delta-cadinene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP5 Q49SP5 "Germacrene A synthase" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP6 Q49SP6 "Germacrene D synthase 2" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
UNIPROTKB|B2KSJ6 B2KSJ6 "Alpha-farnesene synthase" [Cucumis melo (taxid:3656)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.30.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00150645
hypothetical protein (553 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query304
cd00684542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 1e-138
cd00868284 cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla 1e-105
pfam03936270 pfam03936, Terpene_synth_C, Terpene synthase famil 3e-96
cd00385243 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth 2e-39
PLN02279784 PLN02279, PLN02279, ent-kaur-16-ene synthase 1e-20
PLN0215096 PLN02150, PLN02150, terpene synthase/cyclase famil 4e-16
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  401 bits (1034), Expect = e-138
 Identities = 162/302 (53%), Positives = 215/302 (71%), Gaps = 6/302 (1%)

Query: 1   WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYAT 60
           WWKDL+ A KLPFARDR+VE YFW  G YFEP+YSLAR  LAK  ++ ++ID  YDVY T
Sbjct: 246 WWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGT 305

Query: 61  PKELDLFTAAIDRWDMSCMDQLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEM 120
            +EL+LFT A++RWD+S +DQLPEYM+I ++ALL+   EIEEEL  +G SY V Y KE  
Sbjct: 306 LEELELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVVPYLKEAW 365

Query: 121 KILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLGMDSVVTKEAFDWVSE 180
           K LV  Y  E+KW H  YVPT EEYM  +LV+     L   SFLGM  ++T+EAF+W+  
Sbjct: 366 KDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLGMGDILTEEAFEWLES 425

Query: 181 KPRIIRASTIIGRLVNDIKSHKFEQERGHPASAIECYMKEKEREGVSVTQQEVHEELYKK 240
           +P+++RAS+ IGRL+NDI +++ E +RG  AS+IECYMKE       V+++E  EE+ K 
Sbjct: 426 RPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEYG-----VSEEEAREEIKKM 480

Query: 241 VGDAWKDINEECLMP-TEVPRALLMRVLNLSRVIDIIYKEADDYTHVGQVMKDNIASVLI 299
           + DAWK++NEE L P ++VPR +  R LNL+RVID+ YKE D +TH    +KD+I S+L 
Sbjct: 481 IEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFTHPEGEIKDHITSLLF 540

Query: 300 HP 301
            P
Sbjct: 541 EP 542

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1 Back     alignment and domain information
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information
>gnl|CDD|177811 PLN02150, PLN02150, terpene synthase/cyclase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 304
PLN02279784 ent-kaur-16-ene synthase 100.0
cd00684542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PLN02592800 ent-copalyl diphosphate synthase 100.0
cd00868284 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp 100.0
PF03936270 Terpene_synth_C: Terpene synthase family, metal bi 100.0
cd00687303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 100.0
PLN0215096 terpene synthase/cyclase family protein 99.98
cd00385243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 99.88
PF06330376 TRI5: Trichodiene synthase (TRI5); InterPro: IPR02 98.03
cd00686357 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene C 97.9
cd00867236 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. 92.29
PF00494267 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR 91.96
TIGR02749322 prenyl_cyano solanesyl diphosphate synthase. Membe 88.93
PLN02857416 octaprenyl-diphosphate synthase 88.81
PLN02890422 geranyl diphosphate synthase 87.41
TIGR03464266 HpnC squalene synthase HpnC. This family of genes 87.31
cd00685259 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthase 86.52
COG0142322 IspA Geranylgeranyl pyrophosphate synthase [Coenzy 85.58
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information 
Probab=100.00  E-value=9.3e-81  Score=628.56  Aligned_cols=296  Identities=25%  Similarity=0.377  Sum_probs=283.3

Q ss_pred             CCccCCCCCCCChhhhhHHHHHHhhhhcccCCCchHHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHhhhhcccc-cc
Q 048111            1 WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYATPKELDLFTAAIDRWDMS-CM   79 (304)
Q Consensus         1 Ww~~~~l~~~l~~~R~r~~e~yf~~~~~~feP~~s~~R~~~ak~~~l~~~iDD~~D~~~t~eel~~~t~ai~rWd~~-~~   79 (304)
                      |||++|| .+|||+|||++|||||++|++|||+||.+|++|||.+++++++||+||.|||.||++.||+||+|||.+ .+
T Consensus       480 Wwke~~L-~~L~faRdr~ve~Yf~aaa~~fEPe~S~aRi~~aK~~~L~tviDD~fD~yGt~eEL~~ft~aVeRWD~~~~~  558 (784)
T PLN02279        480 WIVENRL-DKLKFARQKLAYCYFSAAATLFSPELSDARLSWAKNGVLTTVVDDFFDVGGSEEELENLIQLVEKWDVNGSP  558 (784)
T ss_pred             eHHhcCC-ccCCchhhHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhccccch
Confidence            9999999 799999999999999999999999999999999999999999999999999999999999999999998 56


Q ss_pred             ccCchhHHHHHHHHHHHHHHHHHHHHhcCCcceehhhHHHHHHHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHH
Q 048111           80 DQLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLT  159 (304)
Q Consensus        80 ~~lp~~~k~~~~~l~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~  159 (304)
                      +.+|+|||+||.+++++++|++.++.+.+|.++++|++++|++++++|++||+|+.+|++||+||||+|+.+|+|..+++
T Consensus       559 ~~lpeymki~f~aL~~t~nei~~~~~~~qGr~v~~~l~~aW~~ll~ayl~EAeW~~~g~vPT~eEYL~na~vS~~l~~i~  638 (784)
T PLN02279        559 DFCSEQVEIIFSALRSTISEIGDKAFTWQGRNVTSHIIKIWLDLLKSMLTEAQWSSNKSTPTLDEYMTNAYVSFALGPIV  638 (784)
T ss_pred             hhCcHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhchhhhhhHHHH
Confidence            89999999999999999999999976556668999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHhCCCCCCHHHHhhccchhHHHHHHHHHHHHhcCccchhhhhhcCCCchhHHHHHhhcccCCcccCHHHHHHHHHH
Q 048111          160 AASFLGMDSVVTKEAFDWVSEKPRIIRASTIIGRLVNDIKSHKFEQERGHPASAIECYMKEKEREGVSVTQQEVHEELYK  239 (304)
Q Consensus       160 ~~~~~~~g~~~~~e~~~~~~~~~~l~~~~~~i~rL~NDi~s~~~E~~~G~~~n~V~~ym~e~~~~g~~~s~eeA~~~i~~  239 (304)
                      +.+++++|..+|+++++| +.+|+++++++.++||+|||+||++|+++|++ |+|+|||+|+   ++++|+|||++++++
T Consensus       639 l~~~~~~G~~l~eev~e~-~~~~~L~~l~s~I~RLlNDI~S~e~E~~rG~~-nsV~cYMke~---~~gvSeEEAi~~i~~  713 (784)
T PLN02279        639 LPALYLVGPKLSEEVVDS-PELHKLYKLMSTCGRLLNDIRGFKRESKEGKL-NAVSLHMIHG---NGNSTEEEAIESMKG  713 (784)
T ss_pred             HHHHHHhCCCCCHHHHhC-cchhHHHHHHHHHHHHHHhccccHhHHhCCCc-ceehhhhccC---CCCCCHHHHHHHHHH
Confidence            989999999999999999 79999999999999999999999999999998 9999999997   323999999999999


Q ss_pred             HHHHHHHHHHHhhcCC--CCCcHHHHHHHHHHHhhhhhhcccCCCCCCCChhHHHHHHhhhccccCC
Q 048111          240 KVGDAWKDINEECLMP--TEVPRALLMRVLNLSRVIDIIYKEADDYTHVGQVMKDNIASVLIHPVAI  304 (304)
Q Consensus       240 ~i~~~~k~ln~~~l~~--~~~p~~~~~~~ln~aR~~~~~Y~~~D~~~~~~~~~~~~i~~ll~~pi~~  304 (304)
                      +|+++||+||++++++  +.+|++|+++++|++|+++++|+++||||.+  .||++|++||++||++
T Consensus       714 ~Ie~~wKeLn~~~l~~~~~~vp~~~~~~~ln~aR~~~~~Y~~~Dgyt~~--~~k~~i~~ll~ePi~l  778 (784)
T PLN02279        714 LIESQRRELLRLVLQEKGSNVPRECKDLFWKMSKVLHLFYRKDDGFTSN--DMMSLVKSVIYEPVSL  778 (784)
T ss_pred             HHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhhhhheeCCCCCChH--HHHHHHHHHhccCCcC
Confidence            9999999999999974  5799999999999999999999999999974  6999999999999985

>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 Back     alignment and domain information
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information
>PLN02150 terpene synthase/cyclase family protein Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4 Back     alignment and domain information
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1 Back     alignment and domain information
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases Back     alignment and domain information
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2 Back     alignment and domain information
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase Back     alignment and domain information
>PLN02857 octaprenyl-diphosphate synthase Back     alignment and domain information
>PLN02890 geranyl diphosphate synthase Back     alignment and domain information
>TIGR03464 HpnC squalene synthase HpnC Back     alignment and domain information
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail Back     alignment and domain information
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query304
3g4d_A554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 5e-90
3lz9_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 2e-71
3m01_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 3e-71
5eas_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 3e-71
5eat_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 3e-71
5eau_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 3e-71
4di5_A535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 4e-71
1hxc_A548 Crystal Structure Of Teas C440w Length = 548 7e-71
1hx9_A548 Crystal Structure Of Teas W273s Form 1 Length = 548 8e-70
1hxg_A548 Crystal Structure Of Teas W273sC440W Length = 548 2e-69
3n0f_A555 Crystal Structure Of Isoprene Synthase From Grey Po 2e-46
1n1b_A549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 2e-43
3sae_A817 Structure Of A Three-Domain Sesquiterpene Synthase: 1e-42
2j5c_A569 Rational Conversion Of Substrate And Product Specif 2e-41
3s9v_A785 Abietadiene Synthase From Abies Grandis Length = 78 2e-40
2ong_A543 Crystal Structure Of Of Limonene Synthase With 2- F 6e-39
3p5p_A764 Crystal Structure Of Taxadiene Synthase From Pacifi 1e-34
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure 
Iteration: 1

 Score =  327 bits (838), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 157/304 (51%), Positives = 209/304 (68%), Gaps = 5/304 (1%)
Query: 1   WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYAT 60
           WWKDL+F  KLP+ARDRVVE YFWI GVYFEP+YSL RK+L K+ +M SI+D  YD YAT
Sbjct: 256 WWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYAT 315
Query: 61  PKELDLFTAAIDRWDMSCMDQLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEM 120
            +EL  +T AI+RWD+ C+D++PEYM+  Y+ALLD+Y+E+ + +A  G  YRV YAK  M
Sbjct: 316 YEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAM 375
Query: 121 KILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLGMDSVVTKEAFDWVSE 180
             L   Y  E+KW   NY P+ EE+   +L T  Y+ML   SF+GM  +VT E F W + 
Sbjct: 376 IRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAAS 435
Query: 181 KPRIIRASTIIGRLVNDIKSHKFEQERGHPASAIECYMKEKEREGVSVTQQEVHEELYKK 240
            P+II+ASTII R ++D+  HKF+  R    SAIECYM+E       VT QE ++   K 
Sbjct: 436 DPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEE-----YGVTAQEAYDVFNKH 490
Query: 241 VGDAWKDINEECLMPTEVPRALLMRVLNLSRVIDIIYKEADDYTHVGQVMKDNIASVLIH 300
           V  AWKD+N+E L PTE+P  +L R LNL+RV+D++Y+E D YT+VG+  K  I S+LI 
Sbjct: 491 VESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIE 550
Query: 301 PVAI 304
           P+A+
Sbjct: 551 PIAL 554
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query304
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 1e-107
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 1e-103
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 1e-103
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 1e-102
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 1e-102
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 1e-102
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 1e-100
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 6e-98
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 8e-98
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 4e-45
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 2e-33
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 3e-31
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 2e-15
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 5e-10
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 6e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
 Score =  322 bits (827), Expect = e-107
 Identities = 157/304 (51%), Positives = 209/304 (68%), Gaps = 5/304 (1%)

Query: 1   WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYAT 60
           WWKDL+F  KLP+ARDRVVE YFWI GVYFEP+YSL RK+L K+ +M SI+D  YD YAT
Sbjct: 256 WWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYAT 315

Query: 61  PKELDLFTAAIDRWDMSCMDQLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEM 120
            +EL  +T AI+RWD+ C+D++PEYM+  Y+ALLD+Y+E+ + +A  G  YRV YAK  M
Sbjct: 316 YEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAM 375

Query: 121 KILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLGMDSVVTKEAFDWVSE 180
             L   Y  E+KW   NY P+ EE+   +L T  Y+ML   SF+GM  +VT E F W + 
Sbjct: 376 IRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAAS 435

Query: 181 KPRIIRASTIIGRLVNDIKSHKFEQERGHPASAIECYMKEKEREGVSVTQQEVHEELYKK 240
            P+II+ASTII R ++D+  HKF+  R    SAIECYM+E       VT QE ++   K 
Sbjct: 436 DPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEY-----GVTAQEAYDVFNKH 490

Query: 241 VGDAWKDINEECLMPTEVPRALLMRVLNLSRVIDIIYKEADDYTHVGQVMKDNIASVLIH 300
           V  AWKD+N+E L PTE+P  +L R LNL+RV+D++Y+E D YT+VG+  K  I S+LI 
Sbjct: 491 VESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIE 550

Query: 301 PVAI 304
           P+A+
Sbjct: 551 PIAL 554
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Length = 337 Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Length = 382 Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Length = 320 Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Length = 300 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query304
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 100.0
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 100.0
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 100.0
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 100.0
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 100.0
1yyq_A374 Trichodiene synthase; terpenoid cyclase fold, site 99.72
3ipi_A295 Geranyltranstransferase; isoprene biosynthesis, he 94.49
3lmd_A360 Geranylgeranyl pyrophosphate synthase; isoprenyl d 92.96
3rmg_A334 Octaprenyl-diphosphate synthase; structural genomi 90.32
3mzv_A341 Decaprenyl diphosphate synthase; transferase, stru 88.98
3oyr_A345 Trans-isoprenyl diphosphate synthase; isoprenyl sy 86.29
3m0g_A297 Farnesyl diphosphate synthase; structural genomics 84.93
3lsn_A304 Geranyltranstransferase; structural genomics, prot 84.22
3ts7_A324 Geranyltranstransferase; isoprenoid synthesis, far 82.6
4dhd_A358 Polyprenyl synthetase; isoprenoid synthesis, isopr 80.21
1wy0_A342 Geranylgeranyl pyrophosphate synthetase; pyrococcu 80.07
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
Probab=100.00  E-value=1.9e-91  Score=685.38  Aligned_cols=299  Identities=53%  Similarity=0.958  Sum_probs=283.5

Q ss_pred             CCccCCCCCCCChhhhhHHHHHHhhhhcccCCCchHHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHhhhhccccccc
Q 048111            1 WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYATPKELDLFTAAIDRWDMSCMD   80 (304)
Q Consensus         1 Ww~~~~l~~~l~~~R~r~~e~yf~~~~~~feP~~s~~R~~~ak~~~l~~~iDD~~D~~~t~eel~~~t~ai~rWd~~~~~   80 (304)
                      |||++||+++|||+|||++|||||++|++|||+||.+|+++||+++|++++||+||.|||+||++.||+||+|||.++++
T Consensus       256 Wwk~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~~~~  335 (554)
T 3g4d_A          256 WWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCID  335 (554)
T ss_dssp             HHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCCGGGGG
T ss_pred             HHHHcCCcccCCchHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcCccccc
Confidence            99999998899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchhHHHHHHHHHHHHHHHHHHHHhcCCcceehhhHHHHHHHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHH
Q 048111           81 QLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTA  160 (304)
Q Consensus        81 ~lp~~~k~~~~~l~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~  160 (304)
                      +||+|||+||.+++++++|++.++.++||+++++|++++|++++++|++||+|+++||+||+||||+||.+|+|++++++
T Consensus       336 ~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~  415 (554)
T 3g4d_A          336 EIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAI  415 (554)
T ss_dssp             GSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHH
Confidence            99999999999999999999999999999899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCHHHHhhccchhHHHHHHHHHHHHhcCccchhhhhhcCCCchhHHHHHhhcccCCcccCHHHHHHHHHHH
Q 048111          161 ASFLGMDSVVTKEAFDWVSEKPRIIRASTIIGRLVNDIKSHKFEQERGHPASAIECYMKEKEREGVSVTQQEVHEELYKK  240 (304)
Q Consensus       161 ~~~~~~g~~~~~e~~~~~~~~~~l~~~~~~i~rL~NDi~s~~~E~~~G~~~n~V~~ym~e~~~~g~~~s~eeA~~~i~~~  240 (304)
                      +++++||+.+|+++++|++++|+++++++.++||+|||+||++|+++|+++|+|+|||+||   |  +|+|+|+++++++
T Consensus       416 ~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMke~---G--vSeEeA~~~i~~~  490 (554)
T 3g4d_A          416 TSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEY---G--VTAQEAYDVFNKH  490 (554)
T ss_dssp             HHHHTSCTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHH---T--CCHHHHHHHHHHH
T ss_pred             HHHHhcCCCCCHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHhc---C--CCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999   9  9999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhhhhcccCCCCCCCChhHHHHHHhhhccccCC
Q 048111          241 VGDAWKDINEECLMPTEVPRALLMRVLNLSRVIDIIYKEADDYTHVGQVMKDNIASVLIHPVAI  304 (304)
Q Consensus       241 i~~~~k~ln~~~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~D~~~~~~~~~~~~i~~ll~~pi~~  304 (304)
                      |+++||+||++|++++++|++|+++++|++|+++++|+++||||.|+..||++|++||++||++
T Consensus       491 Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~l  554 (554)
T 3g4d_A          491 VESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL  554 (554)
T ss_dssp             HHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHSCC-----CCCHHHHHHHHHHHTCCCCC
T ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCCCCC
Confidence            9999999999999988999999999999999999999999999999778999999999999985
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Back     alignment and structure
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A Back     alignment and structure
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} Back     alignment and structure
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* Back     alignment and structure
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus} Back     alignment and structure
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus} Back     alignment and structure
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A Back     alignment and structure
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A* Back     alignment and structure
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus} Back     alignment and structure
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A* Back     alignment and structure
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 304
d1n1ba2328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 1e-127
d5easa2328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 1e-123
d1ps1a_311 a.128.1.4 (A:) Pentalenene synthase {Streptomyces 4e-50
d1di1a_300 a.128.1.4 (A:) Aristolochene synthase {Fungus (Pen 4e-35
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  363 bits (932), Expect = e-127
 Identities = 93/304 (30%), Positives = 157/304 (51%), Gaps = 6/304 (1%)

Query: 1   WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYAT 60
           WW  L F  KLPF RDR+VES+FW VG++   ++   RK+ A I  + ++ID IYDVY T
Sbjct: 30  WWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGT 89

Query: 61  PKELDLFTAAIDRWDMSCMDQLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEM 120
             EL+LFT    RWD   + +LP YMQ+ Y  + +   +   ++  +   + + Y ++ +
Sbjct: 90  LDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSV 149

Query: 121 KILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTAASFLGM-DSVVTKEAFDWVS 179
             LV  Y  E+KW+H+ Y P+++EY+ ++ ++ A   + + ++    ++       D + 
Sbjct: 150 VDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLY 209

Query: 180 EKPRIIRASTIIGRLVNDIKSHKFEQERGHPASAIECYMKEKEREGVSVTQQEVHEELYK 239
           +   I+  + II RL +D+ +  FE  RG     I+CYMKE        +++E  E +  
Sbjct: 210 QYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETN-----ASEEEAVEHVKF 264

Query: 240 KVGDAWKDINEECLMPTEVPRALLMRVLNLSRVIDIIYKEADDYTHVGQVMKDNIASVLI 299
            + +AWKD+N         P  ++    N+ RV   IY   D +        ++IA +L 
Sbjct: 265 LIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEHIAGLLF 324

Query: 300 HPVA 303
            P A
Sbjct: 325 EPYA 328
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Length = 311 Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query304
d1n1ba2328 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa2328 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1ps1a_311 Pentalenene synthase {Streptomyces sp., UC5319 [Ta 100.0
d1di1a_300 Aristolochene synthase {Fungus (Penicillium roquef 99.96
d1kiya_354 Trichodiene synthase {Fusarium sporotrichioides [T 99.48
d2q80a1291 Geranylgeranyl pyrophosphate synthetase {Human (Ho 83.78
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

Probab=100.00  E-value=5.5e-92  Score=651.19  Aligned_cols=298  Identities=31%  Similarity=0.620  Sum_probs=277.9

Q ss_pred             CCccCCCCCCCChhhhhHHHHHHhhhhcccCCCchHHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHhhhhccccccc
Q 048111            1 WWKDLNFAGKLPFARDRVVESYFWIVGVYFEPEYSLARKLLAKIFSMTSIIDYIYDVYATPKELDLFTAAIDRWDMSCMD   80 (304)
Q Consensus         1 Ww~~~~l~~~l~~~R~r~~e~yf~~~~~~feP~~s~~R~~~ak~~~l~~~iDD~~D~~~t~eel~~~t~ai~rWd~~~~~   80 (304)
                      |||++||+++|||+|||++|||||++|++|||+||.+|++|||.+++++++||+||.|||+||++.||+||+|||.++++
T Consensus        30 Wwk~~~l~~~l~faRdr~ve~Yfwa~~~~feP~~s~~Ri~~aK~~~l~~iiDD~yD~ygt~eEl~~ft~ai~rWd~~~~~  109 (328)
T d1n1ba2          30 WWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESIT  109 (328)
T ss_dssp             HHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSTTCHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCSSGGG
T ss_pred             HHHHhCCcccCCchHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhhhHHhcccCCHHHHHHHHHHHHhcCCcccc
Confidence            99999998889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchhHHHHHHHHHHHHHHHHHHHHhcCCcceehhhHHHHHHHHHHHHHHHhHhhCCCCCChHHHHhhhhhhhchhHHHH
Q 048111           81 QLPEYMQIFYEALLDLYKEIEEELATKGWSYRVHYAKEEMKILVHGYHDESKWFHNNYVPTMEEYMRVSLVTSAYSMLTA  160 (304)
Q Consensus        81 ~lp~~~k~~~~~l~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~  160 (304)
                      .||+|||.||.+++++++|++.++.+.||++++++++++|++++++|++||+|.++||+||+||||+++.+|+|++++++
T Consensus       110 ~lp~ymk~~~~~l~~~~~e~~~~~~~~~g~~~~~~lk~~w~~l~~ayl~EakW~~~g~vPt~eEYl~~~~vS~~~~~l~~  189 (328)
T d1n1ba2         110 RLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIIS  189 (328)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHHH
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhceehhhHHHHHH
Confidence            99999999999999999999999888889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCC-CHHHHhhccchhHHHHHHHHHHHHhcCccchhhhhhcCCCchhHHHHHhhcccCCcccCHHHHHHHHHH
Q 048111          161 ASFLGMDSVV-TKEAFDWVSEKPRIIRASTIIGRLVNDIKSHKFEQERGHPASAIECYMKEKEREGVSVTQQEVHEELYK  239 (304)
Q Consensus       161 ~~~~~~g~~~-~~e~~~~~~~~~~l~~~~~~i~rL~NDi~s~~~E~~~G~~~n~V~~ym~e~~~~g~~~s~eeA~~~i~~  239 (304)
                      ++++++|+.+ ++++++|+.++|++++++++|+||+|||+||++|+++|+++|+|+|||+||   |  +|+|+|++++++
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~RL~nDi~~~~~E~~rg~~~s~v~cymke~---~--~s~eeA~~~i~~  264 (328)
T d1n1ba2         190 PTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKET---N--ASEEEAVEHVKF  264 (328)
T ss_dssp             HHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC---------CCCCHHHHHHHHH---C--CCHHHHHHHHHH
T ss_pred             HHHHhCCCccchHHHHHHHhccHHHHHHHHHHHHHHhhhhhHHHHHhcCCcchHHHHHhccC---C--CCHHHHHHHHHH
Confidence            9999998865 566799999999999999999999999999999999999999999999999   9  999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhhhhcccCCCCCCCChhHHHHHHhhhccccC
Q 048111          240 KVGDAWKDINEECLMPTEVPRALLMRVLNLSRVIDIIYKEADDYTHVGQVMKDNIASVLIHPVA  303 (304)
Q Consensus       240 ~i~~~~k~ln~~~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~D~~~~~~~~~~~~i~~ll~~pi~  303 (304)
                      +|+++||+||+++++++++|++|+++++|+||+++++|+++||||+|++.||+||++|||+||.
T Consensus       265 ~ie~~wk~ln~e~l~~~~vp~~~~~~~ln~aR~~~~~Y~~~Dgyt~~~~~~k~~I~~ll~ePvs  328 (328)
T d1n1ba2         265 LIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEHIAGLLFEPYA  328 (328)
T ss_dssp             HHHHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHHTTTSCCC----CHHHHHHHHHHTSCCC
T ss_pred             HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHhccCCC
Confidence            9999999999999999999999999999999999999999999999976899999999999984
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Back     information, alignment and structure
>d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium sporotrichioides [TaxId: 5514]} Back     information, alignment and structure
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure