Citrus Sinensis ID: 048122

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-----
Protein Sequence
MISTKKLIKLARKWQKLAAIRQKRIMSTIFKGDDAEKCYVKGHFIVYTVDHKRFVLPLVYLNNNVVQALLELAEEFGLPTNGPLTVLCDTAFMEYVVTLISHNVNEDAERPLLTLIAGSHRASSS
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEccEEEEEEccccccHHHHHHHHHHHHcccccccccEEcccHHHHHHHHHHHHcccccHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEccccEEEEEHHHcccHHHHHHHHHHHHHcccccccEEcccHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MISTKKLIKLARKWQKLAAIRQKRIMSTIfkgddaekcyvkGHFIVYTVDHKRFVLPLVYLNNNVVQALLELAeefglptngpltvlCDTAFMEYVVTLISHnvnedaerPLLTLiagshrasss
Flexible Loop (DISEMBL)
MISTKKLIKLARKWQKLAAIRQKRIMSTifkgddaekCYVKGHFIVYTVDHKRFVLPLVYLNNNVVQALLELAEEFGLPTNGPLTVLCDTAFMEYVVTLIShnvnedaerPLLTliagshrasss
Low Complexity Region (SEG)
MISTKKLIKLARKWQKLAAIRQKRIMSTIFKGDDAEKCYVKGHFIVYTVDHKRFvlplvylnnnvvQALLELAEEFGLPTNGPLTVLCDTAFMEYVVTLISHNVNEDAERPLLTLIAGSHRASSS
Disordered region (IsUnstruct)
******LIKLARKWQKLAAIRQKRIMSTIFKGDDAEKCYVKGHFIVYTVDHKRFVLPLVYLNNNVVQALLELAEEFGLPTNGPLTVLCDTAFMEYVVTLISHNVNEDAERPLLTLI*********
Disordered Region (DISOPRED)
***TKKL*KLA**************************CYVKGHFIVYTVDHKRFVLPLVYLNNNVVQALLELAEEFGLPTNGPLTVLCDTAFMEYVVTLI***********LLTLIAGSHRA***
Disordered Region (DISEMBL)
MISTKKLIKLARKWQKLAAIRQKRIMSTIFKGDDAEKCYVKGHFIVYTVDHKRFVLPLVYLNNNVVQALLELAEEFGLPTNGPLTVLCDTAFMEYVVTLISHNVNEDAERPLLTLIAGSHRASSS
Disordered Region (DISPRO)
*ISTKKLIKLARKWQKLAAIRQ***************CYVKGHFIVYTVDHKRFVLPLVYLNNNVVQALLELAEEFGLPTNGPLTVLCDTAFMEYVVTLISHNVNEDAERPLLTLIA********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MISTKKLIKLARKWQKLAAIRQKRIMSTIFKGDDAEKCYVKGHFIVYTVDHKRFVLPLVYLNNNVVQALLELAEEFGLPTNGPLTVLCDTAFMEYVVTLISHNVNEDAERPLLTLIAGSHRASSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
224103101	148	SAUR family protein [Populus trichocarpa	0.992	0.837	0.587	7e-34
224103097	146	SAUR family protein [Populus trichocarpa	0.992	0.849	0.568	3e-32
224080736	148	SAUR family protein [Populus trichocarpa	0.992	0.837	0.590	4e-32
225428223	148	PREDICTED: indole-3-acetic acid-induced	1.0	0.844	0.507	1e-31
118486896	144	unknown [Populus trichocarpa]	0.952	0.826	0.590	3e-31
225428233	147	PREDICTED: uncharacterized protein LOC10	1.0	0.850	0.503	1e-30
224103099	148	SAUR family protein [Populus trichocarpa	0.992	0.837	0.560	1e-30
297744507	254	unnamed protein product [Vitis vinifera]	1.0	0.492	0.539	4e-30
297744514	142	unnamed protein product [Vitis vinifera]	0.936	0.823	0.520	2e-29
255566718	148	conserved hypothetical protein [Ricinus	0.992	0.837	0.526	5e-29

>gi|224103101|ref|XP_002312926.1| SAUR family protein [Populus trichocarpa] gi|222849334|gb|EEE86881.1| SAUR family protein [Populus trichocarpa]

 Score =  147 bits (372), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 77/131 (58%), Positives = 89/131 (67%), Gaps = 7/131 (5%)

Query: 1   MISTKKLIKLARKWQKLAAIRQKRI-MSTIFKGDDAEKCYV-----KGHFIVYTVDHKRF 54
           MIS KKLIKLARKWQKLAAIR+KRI       G D+E C       KGHF+VYT D+KRF
Sbjct: 1   MISAKKLIKLARKWQKLAAIRRKRIEFPGTVSGKDSEDCSTSSTAEKGHFVVYTTDNKRF 60

Query: 55  VLPLVYLNNNVVQALLELA-EEFGLPTNGPLTVLCDTAFMEYVVTLISHNVNEDAERPLL 113
           VLPL YLNN +V+ L  LA EE+GL  N PLT+ CD   MEY +TLI  NV +D E+ LL
Sbjct: 61  VLPLDYLNNEIVRELFNLAEEEYGLTGNAPLTLACDAVIMEYTITLIQQNVAKDVEKALL 120

Query: 114 TLIAGSHRASS 124
             IA S  +SS
Sbjct: 121 MTIASSQCSSS 131

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103097|ref|XP_002312924.1| SAUR family protein [Populus trichocarpa] gi|222849332|gb|EEE86879.1| SAUR family protein [Populus trichocarpa]

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 75/132 (56%), Positives = 91/132 (68%), Gaps = 8/132 (6%)

Query: 1   MISTKKLIKLARKWQKLAAIRQKRI-MSTIFKGDDAEKCYV-----KGHFIVYTVDHKRF 54
           MIS KKL+KLARKWQKLAAI +KR+         D++ C       KGHF+VYT D KRF
Sbjct: 1   MISAKKLVKLARKWQKLAAISRKRLTFPQTISSLDSDDCSTSSTAEKGHFVVYTTDKKRF 60

Query: 55  VLPLVYLNNNVVQALLELAEE-FGLPTNGPLTVLCDTAFMEYVVTLISHNVNEDAERPLL 113
           VLPL YLNN +V+ L  LAEE FGL +NGPL + CD AFMEY +T+I  NV +D E+ LL
Sbjct: 61  VLPLDYLNNEIVKELFNLAEEEFGLTSNGPLALPCDAAFMEYAITMIKKNVAKDVEKALL 120

Query: 114 TLIAGSHRASSS 125
             +A S+R SSS
Sbjct: 121 ITLA-SNRCSSS 131

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080736|ref|XP_002306218.1| SAUR family protein [Populus trichocarpa] gi|222849182|gb|EEE86729.1| SAUR family protein [Populus trichocarpa]

 Score =  141 bits (356), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 78/132 (59%), Positives = 92/132 (69%), Gaps = 8/132 (6%)

Query: 1   MISTKKLIKLARKWQKLAAIRQKRIM--STI--FKGDDAEKCYV--KGHFIVYTVDHKRF 54
           MIS KKLI+LARKWQKLAAIRQKR+    TI   + DD        KGHF+VYT D KRF
Sbjct: 1   MISAKKLIRLARKWQKLAAIRQKRLTLPQTISSLESDDRSTSSTAEKGHFVVYTTDKKRF 60

Query: 55  VLPLVYLNNNVVQALLELAEE-FGLPTNGPLTVLCDTAFMEYVVTLISHNVNEDAERPLL 113
           VLPL YLNN +V+ L  LAEE FGL ++GP+T+ CD  FMEY + LI  NV +D E+ LL
Sbjct: 61  VLPLNYLNNEIVRELFNLAEEEFGLTSDGPITLPCDATFMEYAIILIQQNVAKDIEKALL 120

Query: 114 TLIAGSHRASSS 125
             IA S+R SSS
Sbjct: 121 VTIA-SNRCSSS 131

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428223|ref|XP_002279270.1| PREDICTED: indole-3-acetic acid-induced protein ARG7-like [Vitis vinifera]

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/132 (50%), Positives = 94/132 (71%), Gaps = 7/132 (5%)

Query: 1   MISTKKLIKLARKWQKLAAIRQKRI-MSTIFKGDDAEKCYV-----KGHFIVYTVDHKRF 54
           MIS KKLIK+ARKWQK+AAIR+KRI +    +  DAE C       KGHF+VY+ D  RF
Sbjct: 1   MISAKKLIKMARKWQKMAAIRRKRISLPRTSREVDAESCSTSSTAEKGHFVVYSADESRF 60

Query: 55  VLPLVYLNNNVVQALLELAEE-FGLPTNGPLTVLCDTAFMEYVVTLISHNVNEDAERPLL 113
           V+PL YLN+N+ + L +++EE FGLP+NGP+T+ CD  F+EY+++L+  ++ +D E+ LL
Sbjct: 61  VVPLPYLNSNIFRELFKMSEEEFGLPSNGPITLPCDAVFIEYIISLVQQSIAKDLEKALL 120

Query: 114 TLIAGSHRASSS 125
           T IA     S+S
Sbjct: 121 TAIATGRCLSTS 132

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486896|gb|ABK95282.1| unknown [Populus trichocarpa]

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 72/122 (59%), Positives = 86/122 (70%), Gaps = 3/122 (2%)

Query: 1   MISTKKLIKLARKWQKLAAIRQKRIMSTIFKGDD--AEKCYVKGHFIVYTVDHKRFVLPL 58
           MIS KKLIKLARKWQKLAA+R+KRI     K     A +   KGHF+VY+ D KRF+LPL
Sbjct: 1   MISAKKLIKLARKWQKLAALRRKRIALPQMKTSSCSASEMADKGHFVVYSADQKRFLLPL 60

Query: 59  VYLNNNVVQALLELAEE-FGLPTNGPLTVLCDTAFMEYVVTLISHNVNEDAERPLLTLIA 117
            YLNN +V+ LL+LAEE FGLPTNGPLT+ CD   +EYV+ LI   +  D E+ LL  IA
Sbjct: 61  NYLNNKIVRELLKLAEEEFGLPTNGPLTLPCDAELIEYVIALIKQGITRDLEKALLVSIA 120

Query: 118 GS 119
            S
Sbjct: 121 IS 122

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428233|ref|XP_002279337.1| PREDICTED: uncharacterized protein LOC100257266 [Vitis vinifera]

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 66/131 (50%), Positives = 94/131 (71%), Gaps = 6/131 (4%)

Query: 1   MISTKKLIKLARKWQKLAAIRQKRIMSTIFKGD-DAEKCYV----KGHFIVYTVDHKRFV 55
           MIS KKLIK+AR WQK+AAIR+KRI+     G+ DA+ C      KGHF+VY+ D  RFV
Sbjct: 1   MISAKKLIKMARNWQKMAAIRRKRIILPRTSGEVDADGCSTSTAEKGHFVVYSSDESRFV 60

Query: 56  LPLVYLNNNVVQALLELAEE-FGLPTNGPLTVLCDTAFMEYVVTLISHNVNEDAERPLLT 114
           +PL YLN+N+ + L +++EE FGLP+NGP+T+ CD  F+EY+++L+  ++ +D E+ LLT
Sbjct: 61  VPLPYLNSNIFRELFKMSEEEFGLPSNGPITLPCDAVFIEYIISLVQQSIAKDLEKALLT 120

Query: 115 LIAGSHRASSS 125
            IA     S+S
Sbjct: 121 AIATGCCLSTS 131

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103099|ref|XP_002312925.1| SAUR family protein [Populus trichocarpa] gi|222849333|gb|EEE86880.1| SAUR family protein [Populus trichocarpa]

 Score =  136 bits (343), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 74/132 (56%), Positives = 90/132 (68%), Gaps = 8/132 (6%)

Query: 1   MISTKKLIKLARKWQKLAAIRQKRI-MSTIFKGDDAEKCYV-----KGHFIVYTVDHKRF 54
           MIS KKLIKLAR+WQKLAAI +KR+         D++ C       KGHF+VYT D KRF
Sbjct: 1   MISAKKLIKLAREWQKLAAISRKRLTFPQTISSLDSDDCSTSSTAEKGHFVVYTTDEKRF 60

Query: 55  VLPLVYLNNNVVQALLELA-EEFGLPTNGPLTVLCDTAFMEYVVTLISHNVNEDAERPLL 113
           VLPL YLNN +V+ L  LA EEFGL +NGPLT+  D AFMEY +T+I  NV +D E+ LL
Sbjct: 61  VLPLDYLNNEIVKELFNLAEEEFGLTSNGPLTMPRDAAFMEYAITMIKKNVAKDVEKALL 120

Query: 114 TLIAGSHRASSS 125
             +A S R SS+
Sbjct: 121 ITLA-SDRCSST 131

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744507|emb|CBI37769.3| unnamed protein product [Vitis vinifera]

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 68/126 (53%), Positives = 87/126 (69%), Gaps = 1/126 (0%)

Query: 1   MISTKKLIKLARKWQKLAAIRQKRIMSTIFKGDDAEKCYVKGHFIVYTVDHKRFVLPLVY 60
           MIS KKLIK+AR WQK+AAIR+KRI+     G+       KGHF+VYT D  RFV+PLVY
Sbjct: 1   MISAKKLIKMARNWQKMAAIRRKRIILPRTSGEVDADVADKGHFVVYTSDRIRFVVPLVY 60

Query: 61  LNNNVVQALLELA-EEFGLPTNGPLTVLCDTAFMEYVVTLISHNVNEDAERPLLTLIAGS 119
           L+N + + L ++A EEFGLP NGP+ + CD  FMEY V+LI  +V +D E+ LL  IA  
Sbjct: 61  LDNVIFRELFQMAEEEFGLPGNGPIILPCDAVFMEYAVSLIQRHVAKDLEKALLMSIAAD 120

Query: 120 HRASSS 125
             +SSS
Sbjct: 121 RCSSSS 126

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744514|emb|CBI37776.3| unnamed protein product [Vitis vinifera]

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/123 (52%), Positives = 93/123 (75%), Gaps = 6/123 (4%)

Query: 1   MISTKKLIKLARKWQKLAAIRQKRIMSTIFKGD---DAEKCYVKGHFIVYTVDHKRFVLP 57
           MI+ KKLIK+ARKWQK+AA+R+KRI  ++ + D   DA++   KGHF+VYT D +RF++P
Sbjct: 1   MINPKKLIKMARKWQKMAAMRRKRI--SLPRTDEVLDADRLADKGHFVVYTTDKRRFMIP 58

Query: 58  LVYLNNNVVQALLELA-EEFGLPTNGPLTVLCDTAFMEYVVTLISHNVNEDAERPLLTLI 116
           L YL+NN+++ L ++A EEFGL +NGP+T+ CD+ FMEY++ LI   V +D E+ LL  +
Sbjct: 59  LAYLSNNILRELFKMAEEEFGLQSNGPITLPCDSVFMEYILPLIQRGVAKDVEKALLFSL 118

Query: 117 AGS 119
           A S
Sbjct: 119 ATS 121

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566718|ref|XP_002524343.1| conserved hypothetical protein [Ricinus communis] gi|223536434|gb|EEF38083.1| conserved hypothetical protein [Ricinus communis]

 Score =  131 bits (330), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 69/131 (52%), Positives = 89/131 (67%), Gaps = 7/131 (5%)

Query: 1   MISTKKLIKLARKWQKLAAIRQKRI-MSTIFKGDDAEKCYV-----KGHFIVYTVDHKRF 54
           MIS KKL+ LARKWQKLA +++KRI +  I    DAE C       KGHF+VYT D KRF
Sbjct: 1   MISAKKLLILARKWQKLAVLKRKRISIPRIVGSPDAECCSTSNTVEKGHFVVYTNDQKRF 60

Query: 55  VLPLVYLNNNVVQALLELAEE-FGLPTNGPLTVLCDTAFMEYVVTLISHNVNEDAERPLL 113
           VLPL YL N +V+ L +LAEE FGL +N PLT+ CD   ++Y++ LI  +V ++ E+ LL
Sbjct: 61  VLPLEYLKNEIVRELFKLAEEEFGLVSNTPLTLPCDAVLLQYIIGLIQRHVTKEVEKALL 120

Query: 114 TLIAGSHRASS 124
             IA SH +SS
Sbjct: 121 MFIASSHCSSS 131

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
TAIR|locus:2013593	141	AT1G29430 "AT1G29430" [Arabido	0.96	0.851	0.440	2.7e-20
TAIR|locus:2013598	141	SAUR63 "AT1G29440" [Arabidopsi	0.96	0.851	0.440	2.7e-20
TAIR|locus:2013608	141	AT1G29450 "AT1G29450" [Arabido	0.984	0.872	0.416	9.2e-20
TAIR|locus:2013698	135	AT1G29500 "AT1G29500" [Arabido	0.952	0.881	0.432	1.5e-19
TAIR|locus:2013753	141	AT1G29420 "AT1G29420" [Arabido	0.96	0.851	0.401	3.1e-19
TAIR|locus:2013703	143	SAUR68 "AT1G29510" [Arabidopsi	0.936	0.818	0.406	8.3e-19
TAIR|locus:2180270	142	SAUR75 "AT5G27780" [Arabidopsi	0.976	0.859	0.404	2.2e-18
TAIR|locus:2013618	148	AT1G29460 "AT1G29460" [Arabido	0.976	0.824	0.378	1.4e-16
TAIR|locus:2013653	102	AT1G29490 "AT1G29490" [Arabido	0.72	0.882	0.423	1.3e-13
TAIR|locus:2199819	123	AT1G76190 "AT1G76190" [Arabido	0.536	0.544	0.397	9.7e-09

TAIR|locus:2013593 AT1G29430 "AT1G29430" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 56/127 (44%), Positives = 81/127 (63%)

Query:     1 MISTKKLIKLARKWQKLAAIRQKRIM---STIFKGDDAEKCYVKGHFIVYTVDHKRFXXX 57
             MI+ KKL+KLA+KWQ+ AA+++KRI    S+I     ++    KG F+VYT D  RF   
Sbjct:     2 MINAKKLMKLAKKWQQRAALKRKRISFQRSSITTS--SQTAVEKGCFVVYTADKIRFSFP 59

Query:    58 XXXXXXXXXQALLELAEE-FGLPTNGPLTVLCDTAFMEYVVTLISHNVNEDAERPLLTLI 116
                      Q LL+++EE FGLPT GP+T+  D+AF+EY++ LI   ++ED E+ LL  I
Sbjct:    60 LSYLSNTIVQELLKISEEEFGLPTEGPITLPFDSAFLEYLINLIQRRMDEDTEKALLLSI 119

Query:   117 AGSHRAS 123
             + S R+S
Sbjct:   120 S-SARSS 125

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013598 SAUR63 "AT1G29440" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 56/127 (44%), Positives = 79/127 (62%)

Query:     1 MISTKKLIKLARKWQKLAAIRQKRIM---STIFKGDDAEKCYVKGHFIVYTVDHKRFXXX 57
             MI+ KKL+K+A+KWQ+ AA+ +KRI    S++F    +     KG F+VYT D  RF   
Sbjct:     1 MINAKKLMKMAKKWQQRAALHRKRISFQRSSVFTSSSST--VEKGCFVVYTADKIRFAFP 58

Query:    58 XXXXXXXXXQALLELAEE-FGLPTNGPLTVLCDTAFMEYVVTLISHNVNEDAERPLLTLI 116
                      Q LL+++EE FGLPT GP+T+  D+AF+EY+V LI   ++ED E+ LL  I
Sbjct:    59 ISYLSNSVVQELLKISEEDFGLPTEGPITLPFDSAFLEYLVKLIQRRMDEDTEKALLLSI 118

Query:   117 AGSHRAS 123
             + S R S
Sbjct:   119 S-SARCS 124

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0009926 "auxin polar transport" evidence=IDA

GO:0080086 "stamen filament development" evidence=IMP

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

TAIR|locus:2013608 AT1G29450 "AT1G29450" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 52/125 (41%), Positives = 74/125 (59%)

Query:     1 MISTKKLIKLARKWQKLAAIRQKRIMSTIFKGDDAEKCYVKGHFIVYTVDHKRFXXXXXX 60
             M++TKKLIK+A+KWQ+ AA+ +KRI         +     KG F+VYT D  RF      
Sbjct:     1 MMNTKKLIKMAKKWQQRAALHRKRISFQRSSSATSSTAAEKGCFVVYTTDSTRFAFPLSY 60

Query:    61 XXXXXXQALLELAEE-FGLPTNGPLTVLCDTAFMEYVVTLISHNVNEDAERPLLTLIAGS 119
                   Q LL+++EE FGLPT GP+T   D+ F+EY++ L+   ++ D E+ LL  I+ S
Sbjct:    61 LSNSVFQELLKISEEEFGLPTGGPITSPFDSVFLEYLIKLVQRRMDADTEKALLMSIS-S 119

Query:   120 HRASS 124
              R SS
Sbjct:   120 ARCSS 124

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013698 AT1G29500 "AT1G29500" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 54/125 (43%), Positives = 76/125 (60%)

Query:     1 MISTKKLIKLARKWQKLAAIRQKRIMSTIFKGDDAEKCYV-KGHFIVYTVDHKRFXXXXX 59
             M++TKKLIK+ RKWQ+ AA+ +KRI    F+        V KG F+VYT D+ RF     
Sbjct:     1 MMNTKKLIKMFRKWQQRAALHRKRIS---FQRPSTRSTTVEKGCFVVYTADNTRFAFPIS 57

Query:    60 XXXXXXXQALLELAEE-FGLPTNGPLTVLCDTAFMEYVVTLISHNVNEDAERPLLTLIAG 118
                    Q +LE++EE FGLPT GP+T+  D+ F+EY++ LI   ++ D E+ LL  I+ 
Sbjct:    58 YLSNSVFQEILEISEEEFGLPTGGPITLPFDSVFLEYLIKLIKRRMDGDTEKALLMSIS- 116

Query:   119 SHRAS 123
             S R S
Sbjct:   117 SARCS 121

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

TAIR|locus:2013753 AT1G29420 "AT1G29420" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 51/127 (40%), Positives = 78/127 (61%)

Query:     1 MISTKKLIKLARKWQKLAAIRQKRIMSTIFKGDDAEKCYV---KGHFIVYTVDHKRFXXX 57
             M++TKKL+K+A+KWQ+ AA+R+KRI  +  +  D         KG F+VYT D  RF   
Sbjct:     1 MMNTKKLLKMAKKWQQRAALRRKRI--SFHRSTDTTSSSTAAEKGCFVVYTSDRIRFAFP 58

Query:    58 XXXXXXXXXQALLELAEE-FGLPTNGPLTVLCDTAFMEYVVTLISHNVNEDAERPLLTLI 116
                      Q LL+++EE FG+PT GP+T+  D+ F+EY++ L+   ++ D E+ L+T I
Sbjct:    59 ISYLSNSVIQELLKISEEEFGIPTEGPITLPFDSVFLEYLIRLVQRRMDGDTEKALITSI 118

Query:   117 AGSHRAS 123
             + S R S
Sbjct:   119 S-STRCS 124

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013703 SAUR68 "AT1G29510" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 50/123 (40%), Positives = 74/123 (60%)

Query:     1 MISTKKLIKLARKWQKLAAIRQKRIM---STIFKGDDAEKCYVKGHFIVYTVDHKRFXXX 57
             MI+ KKL+K+A+KWQ+ AA+ +KRI    S +F    +     KG F+VYT D  RF   
Sbjct:     2 MINAKKLMKMAKKWQQRAALHRKRISFQRSNVFTSSSST--VEKGCFVVYTADKIRFAFP 59

Query:    58 XXXXXXXXXQALLELAEE-FGLPTNGPLTVLCDTAFMEYVVTLISHNVNEDAERPLLTLI 116
                      Q LL+++EE FGLPT GP+T+  D+ F+EY++ LI   ++ D E+ LL  I
Sbjct:    60 ISYLSNSIVQELLKISEEEFGLPTEGPITLPFDSVFLEYLIKLIQRRMDGDTEKALLMSI 119

Query:   117 AGS 119
             + +
Sbjct:   120 SSA 122

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2180270 SAUR75 "AT5G27780" [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 51/126 (40%), Positives = 75/126 (59%)

Query:     1 MISTKKLIKLARKWQKLAAIRQKRI--MSTIFKGDDAEKCYVKGHFIVYTVDHKRFXXXX 58
             MI+ K L+KLA+ WQ+ AA+++KRI    +      ++    KG F+VYT D  RF    
Sbjct:     2 MINAKTLMKLAKTWQQRAALKRKRISFQRSSITTTSSQTTVEKGCFVVYTADKIRFSFPL 61

Query:    59 XXXXXXXXQALLELAEE-FGLPTNGPLTVLCDTAFMEYVVTLISHNVNEDAERPLLTLIA 117
                     Q LL+++EE FGLPT GP+T+  D+ F+EY++ LI   ++ED E+ LL  I+
Sbjct:    62 SYLSNTIVQELLKISEEEFGLPTEGPITLPFDSVFLEYLIKLIQRRMDEDTEKALLWSIS 121

Query:   118 GSHRAS 123
              S R S
Sbjct:   122 -SARCS 126

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013618 AT1G29460 "AT1G29460" [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 50/132 (37%), Positives = 75/132 (56%)

Query:     1 MISTKKLIKLARKWQKLAAIRQKRIM--------STIFKGDDAEKCYVKGHFIVYTVDHK 52
             MI+TKKL+K+A+KWQ+ AA+++KRI         +T      +     KG F+VYTVD  
Sbjct:     1 MINTKKLLKMAKKWQQRAALKRKRISFQRSTTTTTTTTTTTSSSTAVEKGCFVVYTVDKI 60

Query:    53 RFXXXXXXXXXXXXQALLELAEE-FGLPTNGPLTVLCDTAFMEYVVTLISHNVNEDAERP 111
             RF            + LL+++EE FGL   GP+T+  D+ F+EY++  I   ++ D E+ 
Sbjct:    61 RFAFPLSYLNNSVFEELLKISEEEFGLRAGGPITLPFDSVFLEYLIKFIERRMDGDTEKA 120

Query:   112 LLTLIAGSHRAS 123
             LL  I+ S R S
Sbjct:   121 LLMSIS-SARCS 131

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013653 AT1G29490 "AT1G29490" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 39/92 (42%), Positives = 56/92 (60%)

Query:     1 MISTKKLIKLARKWQKLAAIRQKRIMSTIFKGDDAEKCYV-KGHFIVYTVDHKRFXXXXX 59
             M++TKKL+K+A+KWQ+ AA+R+KRI         +    V KG F+VYT D  RF     
Sbjct:     1 MMNTKKLMKMAKKWQQRAALRRKRISFQRSNSTTSSSSAVEKGCFVVYTADQVRFAFPIS 60

Query:    60 XXXXXXXQALLELAEE-FGLPTNGPLTVLCDT 90
                    Q LL+++EE FG+PT GP+T+  D+
Sbjct:    61 YLSNSVIQELLKISEEEFGIPTEGPITLPFDS 92

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2199819 AT1G76190 "AT1G76190" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 27/68 (39%), Positives = 40/68 (58%)

Query:    41 KGHFIVYTVDHKRFXXXXXXXXXXXXQALLELAE-EFGLPTNGPLTVLCDTAFMEYVVTL 99
             KGHF VYT + KRF            Q LL++AE EFG   +GPL V CD + M++++ L
Sbjct:    23 KGHFAVYTNEGKRFVLPLDYLNHPMLQVLLQMAEDEFGTTIDGPLKVPCDGSLMDHIIML 82

Query:   100 ISHNVNED 107
             +  +++ D
Sbjct:    83 VRRSMSHD 90

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: SAUR55 SAUR family protein (148 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	125
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	8e-23
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	1e-07
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	7e-04
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	0.003

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score = 85.1 bits (211), Expect = 8e-23
 Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 6/103 (5%)

Query: 1   MISTKKLIKLARKWQKLAAIRQKRIMSTIFKGDDAEKCYVKGHFIVYTVDHK-RFVLPLV 59
           M S  K    A+KW   AA  + R  S       +     KGHF VY  +   RFV+P+ 
Sbjct: 1   MASRLKKASSAKKWILSAASGRSRGSS----SKSSSADVPKGHFAVYVGEETRRFVVPIS 56

Query: 60  YLNNNVVQALLELA-EEFGLPTNGPLTVLCDTAFMEYVVTLIS 101
           YLN+ + Q LL+ A EEFG   +G LT+ CD    E+++ ++ 
Sbjct: 57  YLNHPLFQELLDRAEEEFGFDQDGGLTIPCDVVVFEHLLWMLE 99

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score = 46.3 bits (110), Expect = 1e-07
 Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 8/101 (7%)

Query: 8   IKLARKWQKLAAIRQ--KRIMSTIFK-GDDAEKCYV---KGHFIVYTVDHK-RFVLPLVY 60
           IK + K  + A ++Q  KR  S   K G D +   +   KGHF VY  +++ R+++P+ +
Sbjct: 3   IKKSNKLTQTAMLKQILKRCSSLGKKQGYDEDGLPLDVPKGHFPVYVGENRSRYIVPISF 62

Query: 61  LNNNVVQALLELA-EEFGLPTNGPLTVLCDTAFMEYVVTLI 100
           L +   Q+LL+ A EEFG   +  LT+ C+      + ++I
Sbjct: 63  LTHPEFQSLLQQAEEEFGFDHDMGLTIPCEEVVFRSLTSMI 103

Length = 104

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score = 36.3 bits (83), Expect = 7e-04
 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 7/70 (10%)

Query: 41  KGHFIVYT---VDHKRFVLPLVYLNNNVVQALLELA-EEFGL-PTNGPLTVLCDTAFMEY 95
           KGH  VY    ++ KRFV+P+ YLN+ + +  L  A EE G   + G LT+ C      +
Sbjct: 41  KGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLH 100

Query: 96  VVTLISHNVN 105
           ++T  SH ++
Sbjct: 101 LIT--SHQLH 108

Length = 108

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score = 34.3 bits (78), Expect = 0.003
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 10/67 (14%)

Query: 41  KGHFIVYT-----VDHKRFVLPLVYLNNNVVQALLELAEE---FGLPTNGPLTVLC-DTA 91
           KGH  VY      ++ KRFV+P+ +LN+   +  L  AEE   F  P  G LT+ C +  
Sbjct: 37  KGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGG-LTIPCREEV 95

Query: 92  FMEYVVT 98
           F++ + +
Sbjct: 96  FLDLIAS 102

Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	125
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	100.0
PLN03090	104	auxin-responsive family protein; Provisional	100.0
PLN03220	105	uncharacterized protein; Provisional	99.97
PLN03219	108	uncharacterized protein; Provisional	99.97
PRK02899	197	adaptor protein; Provisional	87.78
PRK02315	233	adaptor protein; Provisional	84.08
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	83.08

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=100.00  E-value=4.7e-38  Score=224.07  Aligned_cols=98  Identities=41%  Similarity=0.657  Sum_probs=87.1

Q ss_pred             CCChHHHHHHHHHHHhhhhccccccccccccCCCCccccccCeEEEEEec-ceeeEEeecccCcHHHHHHHHHHH-HcCC
Q 048122            1 MISTKKLIKLARKWQKLAAIRQKRIMSTIFKGDDAEKCYVKGHFIVYTVD-HKRFVLPLVYLNNNVVQALLELAE-EFGL   78 (125)
Q Consensus         1 m~~~~kL~~~~rKWq~~a~~~~~r~s~~~~~~~~~~~~vpkG~~~VyVGe-~~RfvVp~~yL~hp~F~~LL~~ae-EfG~   78 (125)
                      |++.+|..+.++||++.+...+++.+.....   ...++|+||||||||+ ++||+||++|||||+|++||++|| ||||
T Consensus         1 M~~~~k~~~~~~k~~~~~~~~~~~~~~~~~~---~~~~vp~G~~~VyVG~~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~   77 (100)
T PF02519_consen    1 MASRLKSLASAKKWQSRARSKSSSSSSSRSS---SESDVPKGHFAVYVGEERRRFVVPVSYLNHPLFQELLEQAEEEFGF   77 (100)
T ss_pred             CccHHHHHHHHHhhhhhhhhccccccccccc---ccCCCCCCeEEEEeCccceEEEechHHcCchhHHHHHHHHhhhcCc
Confidence            9999999999999999887666544433222   2367999999999997 999999999999999999999999 9999


Q ss_pred             CCCCCeEecCcHHHHHHHHHHHh
Q 048122           79 PTNGPLTVLCDTAFMEYVVTLIS  101 (125)
Q Consensus        79 ~~~G~L~iPC~~~~Fe~vl~~i~  101 (125)
                      +++|+|+||||+++||+++|+|+
T Consensus        78 ~~~G~l~iPC~~~~Fe~~l~~le  100 (100)
T PF02519_consen   78 DQDGPLTIPCDVVLFEHLLWLLE  100 (100)
T ss_pred             CCCCcEEeeCCHHHHHHHHHHhC
Confidence            99999999999999999999985

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PLN03090 auxin-responsive family protein; Provisional

Probab=100.00  E-value=1.1e-36  Score=219.02  Aligned_cols=90  Identities=28%  Similarity=0.498  Sum_probs=79.3

Q ss_pred             hHHHHHHHHHHHhhhhccccccccccccCCCCccccccCeEEEEEec-ceeeEEeecccCcHHHHHHHHHHH-HcCCCCC
Q 048122            4 TKKLIKLARKWQKLAAIRQKRIMSTIFKGDDAEKCYVKGHFIVYTVD-HKRFVLPLVYLNNNVVQALLELAE-EFGLPTN   81 (125)
Q Consensus         4 ~~kL~~~~rKWq~~a~~~~~r~s~~~~~~~~~~~~vpkG~~~VyVGe-~~RfvVp~~yL~hp~F~~LL~~ae-EfG~~~~   81 (125)
                      +++|++|.|||++++..+.    .   ..+..+.+||+||||||||+ ++||+||++|||||+|++||++|| ||||+++
T Consensus        12 ~~~~kq~l~r~~s~~~~~~----~---~~~~~~~~vpkG~~aVyVG~~~~RfvVp~~~L~hP~F~~LL~~aeeEfGf~~~   84 (104)
T PLN03090         12 TAMLKQILKRCSSLGKKQG----Y---DEDGLPLDVPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHD   84 (104)
T ss_pred             HHHHHHHHHHHHHhcccCC----c---ccccCCCCCCCCcEEEEECCCCEEEEEEHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence            6899999999998855321    1   11235678999999999997 689999999999999999999999 9999999


Q ss_pred             CCeEecCcHHHHHHHHHHH
Q 048122           82 GPLTVLCDTAFMEYVVTLI  100 (125)
Q Consensus        82 G~L~iPC~~~~Fe~vl~~i  100 (125)
                      |+|+||||+++|++++|+|
T Consensus        85 G~L~IPC~~~~Fe~ll~~i  103 (104)
T PLN03090         85 MGLTIPCEEVVFRSLTSMI  103 (104)
T ss_pred             CcEEEeCCHHHHHHHHHHh
Confidence            9999999999999999998

>PLN03220 uncharacterized protein; Provisional

Probab=99.97  E-value=9.6e-32  Score=193.54  Aligned_cols=64  Identities=34%  Similarity=0.615  Sum_probs=60.2

Q ss_pred             CccccccCeEEEEEec-----ceeeEEeecccCcHHHHHHHHHHH-HcCCCC-CCCeEecCcHHHHHHHHH
Q 048122           35 AEKCYVKGHFIVYTVD-----HKRFVLPLVYLNNNVVQALLELAE-EFGLPT-NGPLTVLCDTAFMEYVVT   98 (125)
Q Consensus        35 ~~~~vpkG~~~VyVGe-----~~RfvVp~~yL~hp~F~~LL~~ae-EfG~~~-~G~L~iPC~~~~Fe~vl~   98 (125)
                      .+.+|||||||||||+     ++||+||++|||||+|++||++|| ||||++ +|+|+||||++.|++++.
T Consensus        31 ~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~  101 (105)
T PLN03220         31 SSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIA  101 (105)
T ss_pred             ccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEeeCCHHHHHHHHH
Confidence            4668999999999996     699999999999999999999999 999997 699999999999999985

>PLN03219 uncharacterized protein; Provisional

Probab=99.97  E-value=8.8e-32  Score=194.56  Aligned_cols=87  Identities=28%  Similarity=0.429  Sum_probs=69.7

Q ss_pred             HHHHhhhhccccccccccccCCCCccccccCeEEEEEec---ceeeEEeecccCcHHHHHHHHHHH-HcCCCC-CCCeEe
Q 048122           12 RKWQKLAAIRQKRIMSTIFKGDDAEKCYVKGHFIVYTVD---HKRFVLPLVYLNNNVVQALLELAE-EFGLPT-NGPLTV   86 (125)
Q Consensus        12 rKWq~~a~~~~~r~s~~~~~~~~~~~~vpkG~~~VyVGe---~~RfvVp~~yL~hp~F~~LL~~ae-EfG~~~-~G~L~i   86 (125)
                      +-|+..+..+++-.+.++ ...+.+.++||||||||||+   ++||+||++|||||+|++||++|| ||||++ +|+|+|
T Consensus        13 ~~~~~~~~~~~~~~~~~~-~~~~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L~I   91 (108)
T PLN03219         13 QIFKSQSMRNKNGSSSPS-SSTTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTI   91 (108)
T ss_pred             HHHHHHHHhcccCCCCCc-cCCCCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEE
Confidence            456655444433222222 22344678999999999996   799999999999999999999999 999996 699999


Q ss_pred             cCcHHHHHHHHHH
Q 048122           87 LCDTAFMEYVVTL   99 (125)
Q Consensus        87 PC~~~~Fe~vl~~   99 (125)
                      |||++.|++++..
T Consensus        92 PCd~~~F~~ll~~  104 (108)
T PLN03219         92 PCREESFLHLITS  104 (108)
T ss_pred             eCCHHHHHHHHHh
Confidence            9999999999975

>PRK02899 adaptor protein; Provisional

Probab=87.78  E-value=0.46  Score=37.41  Aligned_cols=24  Identities=25%  Similarity=0.699  Sum_probs=20.7

Q ss_pred             cHHHHHHHHHHH-HcCCCCCCCeEe
Q 048122           63 NNVVQALLELAE-EFGLPTNGPLTV   86 (125)
Q Consensus        63 hp~F~~LL~~ae-EfG~~~~G~L~i   86 (125)
                      +-+|.++|++|. |+||..+|||+|
T Consensus        38 e~lF~~mm~Ea~~e~~F~~~~pl~~   62 (197)
T PRK02899         38 HQLFRDMMQEANKELGFEADGPIAV   62 (197)
T ss_pred             HHHHHHHHHHhhhccCcccCCeEEE
Confidence            357888899999 999999999875

>PRK02315 adaptor protein; Provisional

Probab=84.08  E-value=0.83  Score=36.67  Aligned_cols=24  Identities=17%  Similarity=0.375  Sum_probs=21.6

Q ss_pred             cHHHHHHHHHHH-HcCCCCCCCeEe
Q 048122           63 NNVVQALLELAE-EFGLPTNGPLTV   86 (125)
Q Consensus        63 hp~F~~LL~~ae-EfG~~~~G~L~i   86 (125)
                      +-+|.++|++|. |+||..+|||++
T Consensus        38 e~fF~~mm~Ea~~e~~F~~~~pl~~   62 (233)
T PRK02315         38 EEFFYSMMDEVDEEDDFADEGPLWF   62 (233)
T ss_pred             HHHHHHHHHHhccccCcccCCeEEE
Confidence            358999999999 999999999975

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=83.08  E-value=0.57  Score=31.45  Aligned_cols=53  Identities=13%  Similarity=0.158  Sum_probs=41.1

Q ss_pred             ceeeEEeecccC-c--HHHHHHHHHHH-HcCCCCCCCeEecCcHHHHHHHHHHHhcC
Q 048122           51 HKRFVLPLVYLN-N--NVVQALLELAE-EFGLPTNGPLTVLCDTAFMEYVVTLISHN  103 (125)
Q Consensus        51 ~~RfvVp~~yL~-h--p~F~~LL~~ae-EfG~~~~G~L~iPC~~~~Fe~vl~~i~~~  103 (125)
                      +++|.++.+-|. +  ..|..+++... ...-+.+|.+-|-++...|++|+..++.+
T Consensus         7 G~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~   63 (94)
T PF02214_consen    7 GTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTG   63 (94)
T ss_dssp             TEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHT
T ss_pred             CEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhc
Confidence            678888888877 4  47888888653 33334679999999999999999999983

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00