Citrus Sinensis ID: 048125

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
DFDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL
Secondary Structure (PSIPRED)
ccccccccccccccHHHcccccccccEEccccEEEEcccHHHHHHccccEEEccccccEEEcccccccccccEEEccccccccccccccccccHHHHccccccEEEcccccccccccHHHHHHHHccccEEccccEEEEcccccccccccccEEcccccEEcccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccHHHHcccccccEEEcccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHccccccEEEcccccccccccHHHccccccEEEEccccccccccccccccccccEEEEcccccccccccccccccHHHccccccEEEEcccccccccccHHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEEcccccc
Coil and Loop (DISEMBL)
dfdfpfnqlqgslpsdlgftlpnleglnlagnqftgpipvsisnASNLRELMigkngfsgkvpslenLHKLQRVIISQnhlgnygekdnLEFVNSLVNASRLELLQIsdnnfggmlpeavgnfstRLGILSVAenqlfgnipsglrNLVNLElldlsgnqftsripgsigdlqklqmlglngnkflgeipssignLTLLMTLNFAENmlegsipsslgkcqnlIVLDLynnnlsgtipsevIGLSSLSIYLDLSQNQL
Flexible Loop (DISEMBL)
dfdfpfnqlqgslpsdLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL
Low Complexity Region (SEG)
DFDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGlrnlvnlelldlsgnQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL
Disordered region (IsUnstruct)
****************LGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLD******
Disordered Region (DISOPRED)
DFDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL
Disordered Region (DISEMBL)
DFDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL
Disordered Region (DISPRO)
*FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLS****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
DFDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	258	2.2.26 [Sep-21-2011]
C0LGP4	1010	Probable LRR receptor-lik	yes	no	0.972	0.248	0.403	5e-42
Q9SD62	1025	Putative receptor-like pr	no	no	0.968	0.243	0.442	3e-38
Q9ZUI0	980	Putative leucine-rich rep	no	no	0.996	0.262	0.361	2e-35
C0LGT6	1031	LRR receptor-like serine/	no	no	0.968	0.242	0.403	1e-34
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.965	0.199	0.362	8e-32
Q9FRS6	1029	Leucine-rich repeat recep	no	no	0.821	0.206	0.372	7e-31
Q9FL28	1173	LRR receptor-like serine/	no	no	0.941	0.207	0.367	2e-30
Q9LHP4	1141	Receptor-like protein kin	no	no	0.941	0.212	0.343	2e-30
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.965	0.226	0.357	4e-30
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.957	0.207	0.376	2e-29

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score =  171 bits (433), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 102/253 (40%), Positives = 151/253 (59%), Gaps = 2/253 (0%)

Query: 6   FNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSL 65
           +N   G L  DLG  LPNL   N+ GN FTG IP ++SN S L  L + +N  +G +P+ 
Sbjct: 243 YNHFSGRLRPDLGILLPNLLSFNMGGNYFTGSIPTTLSNISTLERLGMNENNLTGSIPTF 302

Query: 66  ENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFST 125
            N+  L+ + +  N LG+   +D LEF+ SL N ++LE L I  N  GG LP ++ N S 
Sbjct: 303 GNVPNLKLLFLHTNSLGSDSSRD-LEFLTSLTNCTQLETLGIGRNRLGGDLPISIANLSA 361

Query: 126 RLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKF 185
           +L  L +    + G+IP  + NL+NL+ L L  N  +  +P S+G L  L+ L L  N+ 
Sbjct: 362 KLVTLDLGGTLISGSIPYDIGNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRL 421

Query: 186 LGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLS 245
            G IP+ IGN+T+L TL+ + N  EG +P+SLG C +L+ L + +N L+GTIP E++ + 
Sbjct: 422 SGGIPAFIGNMTMLETLDLSNNGFEGIVPTSLGNCSHLLELWIGDNKLNGTIPLEIMKIQ 481

Query: 246 SLSIYLDLSQNQL 258
            L + LD+S N L
Sbjct: 482 QL-LRLDMSGNSL 493

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1

 Score =  158 bits (400), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 112/253 (44%), Positives = 157/253 (62%), Gaps = 3/253 (1%)

Query: 7   NQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVP-SL 65
           N   G+L  D G  LPNL+ L +  N FTG IP ++SN S+LR+L I  N  +GK+P S 
Sbjct: 259 NSFSGTLRPDFGSLLPNLQILYMGINSFTGTIPETLSNISSLRQLDIPSNHLTGKIPLSF 318

Query: 66  ENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFST 125
             L  L  + ++ N LGNY   D L+F+ +L N S+L+ L +  N  GG LP  + N ST
Sbjct: 319 GRLQNLLLLGLNNNSLGNYSSGD-LDFLGALTNCSQLQYLNVGFNKLGGQLPVFIANLST 377

Query: 126 RLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKF 185
           +L  LS+  N + G+IP G+ NLV+L+ LDL  N  T ++P S+G+L +L+ + L  N  
Sbjct: 378 QLTELSLGGNLISGSIPHGIGNLVSLQTLDLGENLLTGKLPPSLGELSELRKVLLYSNGL 437

Query: 186 LGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLS 245
            GEIPSS+GN++ L  L    N  EGSIPSSLG C  L+ L+L  N L+G+IP E++ L 
Sbjct: 438 SGEIPSSLGNISGLTYLYLLNNSFEGSIPSSLGSCSYLLDLNLGTNKLNGSIPHELMELP 497

Query: 246 SLSIYLDLSQNQL 258
           SL + L++S N L
Sbjct: 498 SL-VVLNVSFNLL 509

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZUI0|Y2241_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana GN=At2g24130 PE=3 SV=1

 Score =  149 bits (376), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/285 (36%), Positives = 154/285 (54%), Gaps = 28/285 (9%)

Query: 2   FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGK 61
            D   N L G +P +    L  L  L L  N+ TG +P S+SN++NL+ + +  N  SG+
Sbjct: 171 IDLSNNSLTGEIPLNYHCHLKELRFLLLWSNKLTGTVPSSLSNSTNLKWMDLESNMLSGE 230

Query: 62  VPS--LENLHKLQRVIISQNHLGNYGEKDNLE-FVNSLVNASRLELLQISDNNFGGMLPE 118
           +PS  +  + +LQ + +S NH  ++    NLE F  SL N+S L+ L+++ N+ GG +  
Sbjct: 231 LPSQVISKMPQLQFLYLSYNHFVSHNNNTNLEPFFASLANSSDLQELELAGNSLGGEITS 290

Query: 119 AVGNFSTRLGILSVAENQLFGNIP------------------------SGLRNLVNLELL 154
           +V + S  L  + + +N++ G+IP                          L  L  LE +
Sbjct: 291 SVRHLSVNLVQIHLDQNRIHGSIPPEISNLLNLTLLNLSSNLLSGPIPRELCKLSKLERV 350

Query: 155 DLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIP 214
            LS N  T  IP  +GD+ +L +L ++ N   G IP S GNL+ L  L    N L G++P
Sbjct: 351 YLSNNHLTGEIPMELGDIPRLGLLDVSRNNLSGSIPDSFGNLSQLRRLLLYGNHLSGTVP 410

Query: 215 SSLGKCQNLIVLDLYNNNLSGTIPSEVIG-LSSLSIYLDLSQNQL 258
            SLGKC NL +LDL +NNL+GTIP EV+  L +L +YL+LS N L
Sbjct: 411 QSLGKCINLEILDLSHNNLTGTIPVEVVSNLRNLKLYLNLSSNHL 455

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score =  146 bits (369), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 102/253 (40%), Positives = 143/253 (56%), Gaps = 3/253 (1%)

Query: 7   NQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVP-SL 65
           N   G+L +D G+ LPNL  L L  NQFTG IP +++N S+L    I  N  SG +P S 
Sbjct: 251 NSFSGNLRADFGYLLPNLRRLLLGTNQFTGAIPKTLANISSLERFDISSNYLSGSIPLSF 310

Query: 66  ENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFST 125
             L  L  + I +N+         LEF+ ++ N ++LE L +  N  GG LP ++ N ST
Sbjct: 311 GKLRNLWWLGI-RNNSLGNNSSSGLEFIGAVANCTQLEYLDVGYNRLGGELPASIANLST 369

Query: 126 RLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKF 185
            L  L + +N + G IP  + NLV+L+ L L  N  +  +P S G L  LQ++ L  N  
Sbjct: 370 TLTSLFLGQNLISGTIPHDIGNLVSLQELSLETNMLSGELPVSFGKLLNLQVVDLYSNAI 429

Query: 186 LGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLS 245
            GEIPS  GN+T L  L+   N   G IP SLG+C+ L+ L +  N L+GTIP E++ + 
Sbjct: 430 SGEIPSYFGNMTRLQKLHLNSNSFHGRIPQSLGRCRYLLDLWMDTNRLNGTIPQEILQIP 489

Query: 246 SLSIYLDLSQNQL 258
           SL+ Y+DLS N L
Sbjct: 490 SLA-YIDLSNNFL 501

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  137 bits (345), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 94/259 (36%), Positives = 143/259 (55%), Gaps = 10/259 (3%)

Query: 1   DFDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSG 60
           D     N L GSLP  +     NLE L L+G Q +G IPV +S   +L++L +  N  +G
Sbjct: 315 DLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAG 374

Query: 61  KVP-SLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEA 119
            +P +L  L +L  + +  N L             S+ N + L+ L +  NN  G LP+ 
Sbjct: 375 SIPEALFELVELTDLYLHNNTLEG-------TLSPSISNLTNLQWLVLYHNNLEGKLPKE 427

Query: 120 VGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLG 179
           +     +L +L + EN+  G IP  + N  +L+++D+ GN F   IP SIG L++L +L 
Sbjct: 428 ISALR-KLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLH 486

Query: 180 LNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPS 239
           L  N+ +G +P+S+GN   L  L+ A+N L GSIPSS G  + L  L LYNN+L G +P 
Sbjct: 487 LRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPD 546

Query: 240 EVIGLSSLSIYLDLSQNQL 258
            +I L +L+  ++LS N+L
Sbjct: 547 SLISLRNLT-RINLSHNRL 564

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FRS6|PXL1_ARATH Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana GN=PXL1 PE=2 SV=1

 Score =  134 bits (337), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 91/244 (37%), Positives = 130/244 (53%), Gaps = 32/244 (13%)

Query: 15  SDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRV 74
           SD   + P+L+ L+L+ N F   +P S+SN ++L+ + +  N F G  P           
Sbjct: 94  SDQIQSFPSLQALDLSNNAFESSLPKSLSNLTSLKVIDVSVNSFFGTFP----------- 142

Query: 75  IISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAE 134
                    YG          L  A+ L  +  S NNF G LPE +GN +T L +L    
Sbjct: 143 ---------YG----------LGMATGLTHVNASSNNFSGFLPEDLGN-ATTLEVLDFRG 182

Query: 135 NQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIG 194
               G++PS  +NL NL+ L LSGN F  ++P  IG+L  L+ + L  N F+GEIP   G
Sbjct: 183 GYFEGSVPSSFKNLKNLKFLGLSGNNFGGKVPKVIGELSSLETIILGYNGFMGEIPEEFG 242

Query: 195 NLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLS 254
            LT L  L+ A   L G IPSSLG+ + L  + LY N L+G +P E+ G++SL ++LDLS
Sbjct: 243 KLTRLQYLDLAVGNLTGQIPSSLGQLKQLTTVYLYQNRLTGKLPRELGGMTSL-VFLDLS 301

Query: 255 QNQL 258
            NQ+
Sbjct: 302 DNQI 305

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  132 bits (333), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/253 (36%), Positives = 132/253 (52%), Gaps = 10/253 (3%)

Query: 6   FNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSL 65
           FN + G LP+DLG  L NL  L+   N  TGPIP SISN + L+ L +  N  +G++P  
Sbjct: 369 FNNISGELPADLGL-LTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRG 427

Query: 66  ENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFST 125
                L  + I +NH          E  + + N S LE L ++DNN  G L   +G    
Sbjct: 428 FGRMNLTFISIGRNHFTG-------EIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQ- 479

Query: 126 RLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKF 185
           +L IL V+ N L G IP  + NL +L +L L  N FT RIP  + +L  LQ L +  N  
Sbjct: 480 KLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDL 539

Query: 186 LGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLS 245
            G IP  + ++ LL  L+ + N   G IP+   K ++L  L L  N  +G+IP+ +  LS
Sbjct: 540 EGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLS 599

Query: 246 SLSIYLDLSQNQL 258
            L+ + D+S N L
Sbjct: 600 LLNTF-DISDNLL 611

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  132 bits (333), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/253 (34%), Positives = 143/253 (56%), Gaps = 10/253 (3%)

Query: 7   NQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-L 65
           NQ+ G +PS+LG TL  L       NQ  G IP  +++ ++L+ L + +N  +G +PS L
Sbjct: 380 NQISGLIPSELG-TLTKLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTIPSGL 438

Query: 66  ENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFST 125
             L  L ++++  N L  +  ++       + N S L  L++  N   G +P  +G+   
Sbjct: 439 FMLRNLTKLLLISNSLSGFIPQE-------IGNCSSLVRLRLGFNRITGEIPSGIGSLK- 490

Query: 126 RLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKF 185
           ++  L  + N+L G +P  + +   L+++DLS N     +P  +  L  LQ+L ++ N+F
Sbjct: 491 KINFLDFSSNRLHGKVPDEIGSCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQF 550

Query: 186 LGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLS 245
            G+IP+S+G L  L  L  ++N+  GSIP+SLG C  L +LDL +N LSG IPSE+  + 
Sbjct: 551 SGKIPASLGRLVSLNKLILSKNLFSGSIPTSLGMCSGLQLLDLGSNELSGEIPSELGDIE 610

Query: 246 SLSIYLDLSQNQL 258
           +L I L+LS N+L
Sbjct: 611 NLEIALNLSSNRL 623

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  131 bits (330), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 97/271 (35%), Positives = 146/271 (53%), Gaps = 22/271 (8%)

Query: 7   NQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-L 65
           NQL+G +P  +GF   N   L+++ N  +GPIP        L  L +G N  SG +P  L
Sbjct: 389 NQLEGKIPPLIGF-YSNFSVLDMSANSLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRDL 447

Query: 66  ENLHKLQRVIISQNHLG--------NYGEKDNLEFVNSLVNA---------SRLELLQIS 108
           +    L ++++  N L         N      LE   + ++            LE L+++
Sbjct: 448 KTCKSLTKLMLGDNQLTGSLPIELFNLQNLTALELHQNWLSGNISADLGKLKNLERLRLA 507

Query: 109 DNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGS 168
           +NNF G +P  +GN +  +G  +++ NQL G+IP  L + V ++ LDLSGN+F+  I   
Sbjct: 508 NNNFTGEIPPEIGNLTKIVG-FNISSNQLTGHIPKELGSCVTIQRLDLSGNKFSGYIAQE 566

Query: 169 IGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNL-IVLD 227
           +G L  L++L L+ N+  GEIP S G+LT LM L    N+L  +IP  LGK  +L I L+
Sbjct: 567 LGQLVYLEILRLSDNRLTGEIPHSFGDLTRLMELQLGGNLLSENIPVELGKLTSLQISLN 626

Query: 228 LYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
           + +NNLSGTIP  +  L  L I L L+ N+L
Sbjct: 627 ISHNNLSGTIPDSLGNLQMLEI-LYLNDNKL 656

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  129 bits (325), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/260 (37%), Positives = 142/260 (54%), Gaps = 13/260 (5%)

Query: 7   NQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVP-SL 65
           NQL G +P ++G  L +L  LNL  N F G IPV + + ++L  L +G N   G++P  +
Sbjct: 482 NQLTGEIPREIG-KLTSLSVLNLNANMFQGKIPVELGDCTSLTTLDLGSNNLQGQIPDKI 540

Query: 66  ENLHKLQRVIISQNHL-GNYGEKDNLEFVNSLVNASRLELLQ------ISDNNFGGMLPE 118
             L +LQ +++S N+L G+   K +  F    +    L  LQ      +S N   G +PE
Sbjct: 541 TALAQLQCLVLSYNNLSGSIPSKPSAYFHQ--IEMPDLSFLQHHGIFDLSYNRLSGPIPE 598

Query: 119 AVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQML 178
            +G     + I S++ N L G IP+ L  L NL +LDLSGN  T  IP  +G+  KLQ L
Sbjct: 599 ELGECLVLVEI-SLSNNHLSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNSLKLQGL 657

Query: 179 GLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIP 238
            L  N+  G IP S G L  L+ LN  +N L+G +P+SLG  + L  +DL  NNLSG + 
Sbjct: 658 NLANNQLNGHIPESFGLLGSLVKLNLTKNKLDGPVPASLGNLKELTHMDLSFNNLSGELS 717

Query: 239 SEVIGLSSLSIYLDLSQNQL 258
           SE+  +  L + L + QN+ 
Sbjct: 718 SELSTMEKL-VGLYIEQNKF 736

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
224097750	1023	predicted protein [Populus trichocarpa]	0.992	0.250	0.544	3e-66
255581223	1015	receptor-kinase, putative [Ricinus commu	0.972	0.247	0.545	4e-65
224121306	966	predicted protein [Populus trichocarpa]	0.988	0.263	0.564	1e-64
255577438	1028	receptor-kinase, putative [Ricinus commu	0.980	0.246	0.531	1e-62
224119022	1021	predicted protein [Populus trichocarpa]	0.984	0.248	0.515	7e-62
255585471	963	serine-threonine protein kinase, plant-t	0.996	0.266	0.511	5e-61
224116466	1008	predicted protein [Populus trichocarpa]	0.992	0.253	0.501	6e-61
224127492	1022	predicted protein [Populus trichocarpa]	0.984	0.248	0.550	1e-60
356523290	1001	PREDICTED: probable LRR receptor-like se	0.992	0.255	0.519	3e-59
449499190	1023	PREDICTED: LOW QUALITY PROTEIN: probable	0.992	0.250	0.521	3e-59

>gi|224097750|ref|XP_002311066.1| predicted protein [Populus trichocarpa] gi|222850886|gb|EEE88433.1| predicted protein [Populus trichocarpa]

 Score =  257 bits (657), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 140/257 (54%), Positives = 184/257 (71%), Gaps = 1/257 (0%)

Query: 2   FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGK 61
           F  P NQL G LP +LG TLPNL+  N+  NQF G IP ++SNAS + +L +  N F+GK
Sbjct: 247 FSAPLNQLYGILPPELGLTLPNLDTFNILSNQFRGLIPSTLSNASKISDLQLRNNSFTGK 306

Query: 62  VPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVG 121
           VPSL  LH LQR++++ N+LGN  E D+L F+  L N + LE+L I+ NNFGG+LPE V 
Sbjct: 307 VPSLAGLHNLQRLVLNFNNLGN-NEDDDLGFLYPLANTTSLEILAINHNNFGGVLPEIVC 365

Query: 122 NFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLN 181
           NFST+L I+ + EN L G+IP+ +  L+ L+ L L  NQ T  IP SIG LQ+L +  +N
Sbjct: 366 NFSTKLRIMIIGENNLRGSIPTEIGKLIGLDTLGLELNQLTGIIPSSIGKLQRLGVFNIN 425

Query: 182 GNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEV 241
           GNK  G IPSS+GN+T L+ + F  N L+G IPSSLG CQNL++L L  NNLSG+IP EV
Sbjct: 426 GNKISGNIPSSLGNITSLLEVYFFANNLQGRIPSSLGNCQNLLMLRLDQNNLSGSIPKEV 485

Query: 242 IGLSSLSIYLDLSQNQL 258
           +G+SSLS+YLDL++NQL
Sbjct: 486 LGISSLSMYLDLAENQL 502

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581223|ref|XP_002531424.1| receptor-kinase, putative [Ricinus communis] gi|223528974|gb|EEF30966.1| receptor-kinase, putative [Ricinus communis]

 Score =  253 bits (647), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 138/253 (54%), Positives = 183/253 (72%), Gaps = 2/253 (0%)

Query: 6   FNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSL 65
           +NQ+QG LPS+LG TLPNL+   +A N F G IP S SNASNL  L++ +N  +G+VPSL
Sbjct: 252 YNQIQGRLPSNLGITLPNLQVFAIARNDFIGSIPSSFSNASNLVWLIMSENKLTGRVPSL 311

Query: 66  ENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFST 125
           E LH LQ + +  N+LG   E ++L+FV+SLVN + L  L+I +N F G+LPE++ NFST
Sbjct: 312 EQLHNLQILGLGYNYLG--LEANDLDFVSSLVNCTNLWRLEIHNNKFHGVLPESISNFST 369

Query: 126 RLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKF 185
               L +AEN + G IPS + NLVNLE L+++ NQ +  IP + G+L  L++L L GNK 
Sbjct: 370 TFSQLVIAENNIAGRIPSSISNLVNLERLEMANNQLSGNIPSNFGNLNMLKVLHLFGNKL 429

Query: 186 LGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLS 245
            G IPSS+GNLT+L+TL+F +N L+G IPSSL +C+NL+VLDL  NNLSG+IP +V GLS
Sbjct: 430 SGTIPSSLGNLTMLLTLSFYDNNLQGRIPSSLAECENLMVLDLAKNNLSGSIPLQVFGLS 489

Query: 246 SLSIYLDLSQNQL 258
           SLSI LDLS N  
Sbjct: 490 SLSIALDLSANHF 502

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121306|ref|XP_002330794.1| predicted protein [Populus trichocarpa] gi|222872596|gb|EEF09727.1| predicted protein [Populus trichocarpa]

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 145/257 (56%), Positives = 187/257 (72%), Gaps = 2/257 (0%)

Query: 2   FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGK 61
           F FP NQLQG+LPSDLG   P L  LN+  NQ TG IP+S+SN+S L  L I  NGF+G 
Sbjct: 209 FCFPQNQLQGTLPSDLGNEFPYLVELNVGDNQITGSIPISLSNSSYLERLTIAINGFTGN 268

Query: 62  VPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVG 121
           VPSLE +HKL  + IS NHLG  GE  +L+F++++ NA+ L+L+ I+ NNFGGMLP A+ 
Sbjct: 269 VPSLEKMHKLWWLSISTNHLGT-GEARDLDFLSTVSNATSLQLMAINVNNFGGMLPSAIT 327

Query: 122 NFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLN 181
           NF T L I+++  N++FG+IP+GL NLVNLE+L +  NQFT  IP  IG LQ+L+ LGL 
Sbjct: 328 NF-TSLSIMTLDSNRIFGSIPAGLGNLVNLEMLYMGKNQFTGDIPEEIGKLQQLKKLGLQ 386

Query: 182 GNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEV 241
           GNK  G IPSS GNLTLL  L   ++ L+GSIP  LGKC NL++L+L  NNL+G IP EV
Sbjct: 387 GNKLSGNIPSSFGNLTLLTHLYMYQSSLKGSIPPELGKCLNLLLLNLSQNNLTGAIPKEV 446

Query: 242 IGLSSLSIYLDLSQNQL 258
           + + SL+IY+DLS+N L
Sbjct: 447 LSIPSLTIYMDLSRNNL 463

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577438|ref|XP_002529598.1| receptor-kinase, putative [Ricinus communis] gi|223530931|gb|EEF32790.1| receptor-kinase, putative [Ricinus communis]

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 135/254 (53%), Positives = 176/254 (69%), Gaps = 1/254 (0%)

Query: 5   PFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS 64
           P NQL G+LP DLG +LP LE L L  N+F+G IP +ISNASNL  L + +N F+GKVPS
Sbjct: 252 PINQLHGNLPPDLGQSLPKLEVLRLYANKFSGSIPPTISNASNLVALDVSQNNFTGKVPS 311

Query: 65  LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFS 124
           L  LH L  + I +N+LGN GE D+L F+ +L N + LE+L I++NN GG+LPE + NFS
Sbjct: 312 LARLHNLSYIGIHKNNLGN-GEDDDLSFLYTLANNTNLEILAITENNLGGVLPEMLSNFS 370

Query: 125 TRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNK 184
           T+L  ++   N++ G IPS + NL+ LE L    N+ T  IP S+G L+ L  L LN N 
Sbjct: 371 TKLVHMAFGRNKIRGRIPSEIDNLIRLEALGFERNELTGSIPSSLGKLKNLIKLYLNDNN 430

Query: 185 FLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGL 244
             G IPSS+GN+T L T++   N LEGSIPSSLG CQ ++++DL  NNLSGTIP E+I +
Sbjct: 431 ISGSIPSSLGNITSLSTISLKVNNLEGSIPSSLGNCQQMLLMDLSRNNLSGTIPKELISI 490

Query: 245 SSLSIYLDLSQNQL 258
            SLSI LDLS+NQ 
Sbjct: 491 PSLSISLDLSENQF 504

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119022|ref|XP_002331306.1| predicted protein [Populus trichocarpa] gi|222873889|gb|EEF11020.1| predicted protein [Populus trichocarpa]

 Score =  243 bits (619), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 132/256 (51%), Positives = 177/256 (69%), Gaps = 2/256 (0%)

Query: 3   DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKV 62
           D  FN   G+LPSD+G +LPNLE  ++A NQFTG IPVSISNASN+  L +  N  +G+V
Sbjct: 246 DIGFNLFHGNLPSDIGISLPNLEFFSIASNQFTGSIPVSISNASNIELLQVSLNNLTGEV 305

Query: 63  PSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGN 122
           P+LE LH+L    +  NHLG+ G+ ++L F++SL NA+ LE L I  NNFGG LP+ + N
Sbjct: 306 PTLEKLHRLNFFTLFSNHLGS-GQANDLSFLSSLTNATTLEYLSIKRNNFGGELPKQISN 364

Query: 123 FSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNG 182
            ST LG++S+ EN + G+IP+G+  LVNL++ D+  N+ +  IP SIG+LQ L+ L L+ 
Sbjct: 365 LSTMLGVISLPENNILGSIPAGIEKLVNLKVFDVGNNKISGIIPSSIGELQNLEGLVLDY 424

Query: 183 NKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVI 242
           N   G IPSS+GNLT LM L   +N LEGSIPSSLG C+ L+VL L  NNLSG IP  + 
Sbjct: 425 NNLSGRIPSSVGNLTKLMALYLGDNSLEGSIPSSLGNCKKLLVLTLCGNNLSGDIPPGLF 484

Query: 243 GLSSLSIYLDLSQNQL 258
           G+ SL +Y+  S+N  
Sbjct: 485 GIFSL-LYICFSKNHF 499

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585471|ref|XP_002533428.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223526716|gb|EEF28948.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  240 bits (612), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 132/258 (51%), Positives = 179/258 (69%), Gaps = 1/258 (0%)

Query: 1   DFDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSG 60
           + D   N   G+LPSD+GF LPN+    ++ N+FTG IPVS+SNA+NL  L++ +N  +G
Sbjct: 253 NLDIGENNFHGNLPSDIGFLLPNIRWFAISSNEFTGKIPVSLSNATNLESLLLLQNNLTG 312

Query: 61  KVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAV 120
           +VPSL  L +L+   ++ N+LG  G+ D+L F++SL N + LE L ++ NNFGGMLP+++
Sbjct: 313 EVPSLAKLDRLRVFSLTSNNLGT-GKADDLSFLHSLTNTTALEELGVNGNNFGGMLPDSI 371

Query: 121 GNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGL 180
            N ST L IL +  N++ G+IPSG+ NLV+LE  ++  NQ +  IP SIG LQ L +L L
Sbjct: 372 ANLSTTLRILLLDNNRIIGSIPSGIENLVSLEDFEVWNNQLSGFIPDSIGKLQNLVVLAL 431

Query: 181 NGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSE 240
           N N   G IPSS+GNLT L+ L   +N L G IPS LG+CQN++ L L  NN SG+IP E
Sbjct: 432 NSNMLSGHIPSSLGNLTNLIQLLVEDNNLSGRIPSDLGRCQNMLGLSLSQNNFSGSIPPE 491

Query: 241 VIGLSSLSIYLDLSQNQL 258
           VI +SSLSIYLDLSQN L
Sbjct: 492 VISISSLSIYLDLSQNNL 509

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116466|ref|XP_002331904.1| predicted protein [Populus trichocarpa] gi|222874576|gb|EEF11707.1| predicted protein [Populus trichocarpa]

 Score =  239 bits (611), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 129/257 (50%), Positives = 176/257 (68%), Gaps = 1/257 (0%)

Query: 2   FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGK 61
           F  P+NQ  G+LP ++G TLPNL+ L +  N+ +G +P ++ NA+   E+ +  N F+GK
Sbjct: 242 FSLPYNQFHGTLPPNIGLTLPNLQYLGIHDNRLSGQLPATLINATKFTEIYLSYNKFTGK 301

Query: 62  VPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVG 121
           VP+L  +  L+ + + +N LG  GE D+L F+ +L N+S+LE L I +NNFGG+LP+ + 
Sbjct: 302 VPTLAIMPNLRILSMEENGLGK-GEDDDLSFLYTLSNSSKLEDLYIDNNNFGGVLPDIIS 360

Query: 122 NFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLN 181
           NFST+L  ++   NQ+ G IP G+ NLV+L+ L L  N  T  IP SIG LQ L    LN
Sbjct: 361 NFSTKLKQMAFGSNQIRGTIPDGIGNLVSLDTLGLEANHLTGSIPSSIGKLQNLADFFLN 420

Query: 182 GNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEV 241
            NK  G IPSS+GN+T LM +NF +N L+GSIP SLG CQNL+VL L  NNLSG IP EV
Sbjct: 421 ENKLSGSIPSSLGNITSLMQINFDQNNLQGSIPPSLGNCQNLLVLALSQNNLSGPIPKEV 480

Query: 242 IGLSSLSIYLDLSQNQL 258
           + +SSLS+YL LS+NQL
Sbjct: 481 LSISSLSMYLVLSENQL 497

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127492|ref|XP_002329291.1| predicted protein [Populus trichocarpa] gi|222870745|gb|EEF07876.1| predicted protein [Populus trichocarpa]

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 141/256 (55%), Positives = 172/256 (67%), Gaps = 2/256 (0%)

Query: 4   FPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVP 63
           FP NQL GSLP  LG TLPNL+  N+  NQF G IP + SNASNL    IG N F+GKVP
Sbjct: 251 FPVNQLYGSLPHTLGLTLPNLQVFNIHTNQFGGLIPATFSNASNLLSFQIGSNNFNGKVP 310

Query: 64  SLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVN-ASRLELLQISDNNFGGMLPEAVGN 122
            L + H LQ + +  N+LG  GE ++L FV  L N  + LE L  SDNNFGG+LPE V N
Sbjct: 311 PLSSSHDLQVLGVGDNNLGK-GENNDLNFVYPLANNMTSLEALDTSDNNFGGVLPEIVSN 369

Query: 123 FSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNG 182
           FST+L  ++ A NQ+ G+IP+ + NL+NLE L L  NQ T  IP S+G LQKL  L LNG
Sbjct: 370 FSTKLMKMTFARNQIRGSIPTQIGNLINLEALGLETNQLTGMIPSSMGKLQKLSDLFLNG 429

Query: 183 NKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVI 242
           NK  G IPSS+GN+T L  +N   N LEGSIP SLG  Q L+ L L  NNLSG IP E++
Sbjct: 430 NKISGMIPSSMGNMTSLGRVNMRLNNLEGSIPPSLGNWQKLLSLALSQNNLSGPIPKELV 489

Query: 243 GLSSLSIYLDLSQNQL 258
            + SLS+YL LS+N+L
Sbjct: 490 SIPSLSMYLVLSENEL 505

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523290|ref|XP_003530273.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Glycine max]

 Score =  234 bits (597), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 134/258 (51%), Positives = 181/258 (70%), Gaps = 2/258 (0%)

Query: 2   FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGK 61
           F F  N L G+LP+D+GFTLPN++    A N  TG +P S+ NAS L  L    NG +G 
Sbjct: 210 FTFTQNHLHGTLPADVGFTLPNIQVFAGAVNNLTGSVPASLLNASKLEILDFSLNGLTGT 269

Query: 62  VPS-LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAV 120
           +P  L  L++L R+    N LG  G+ D+L F++SLVN + L++L++  NNFGG+LP+++
Sbjct: 270 LPKNLGVLYRLTRLSFEHNRLGT-GKTDDLSFLDSLVNCTALQVLRLGVNNFGGVLPKSI 328

Query: 121 GNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGL 180
            NFS++L   ++  N++ GNIP+G+ NL NL L+ L GN+ TS +P ++G LQ LQ+L L
Sbjct: 329 ANFSSQLHTFALNSNRIHGNIPAGIGNLANLALIGLEGNELTSSVPDALGRLQNLQLLYL 388

Query: 181 NGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSE 240
           N NKF G IPSS+GNL+L+  L   EN  EGSIPSSLG CQ L+VL LY+N LSGTIP+E
Sbjct: 389 NVNKFSGRIPSSLGNLSLITKLFLEENNFEGSIPSSLGNCQKLLVLSLYSNKLSGTIPTE 448

Query: 241 VIGLSSLSIYLDLSQNQL 258
           VIGLSSL+IY D+S N L
Sbjct: 449 VIGLSSLAIYFDVSYNAL 466

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449499190|ref|XP_004160745.1| PREDICTED: LOW QUALITY PROTEIN: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cucumis sativus]

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 134/257 (52%), Positives = 168/257 (65%), Gaps = 1/257 (0%)

Query: 2   FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGK 61
           F  P NQL+G LP++LGF  PNL+ L +  NQF+GPIP ++SNAS L E +I  N FSGK
Sbjct: 253 FSLPVNQLEGGLPTNLGFIFPNLQILKIHTNQFSGPIPFTLSNASKLEEFVISNNMFSGK 312

Query: 62  VPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVG 121
           VPSL +   L+   I +N+LG YG  D+L F+  LVN + L  + ISDNNFGG LPE + 
Sbjct: 313 VPSLASTRHLEVFGIDRNNLG-YGNVDDLNFLFPLVNCTNLSSVVISDNNFGGALPEYIS 371

Query: 122 NFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLN 181
           NFST+L I+    NQ+ G IP+ + NL  LE L L  NQ T  IP S G L KL  L LN
Sbjct: 372 NFSTKLRIIGFGRNQIHGTIPTEIGNLFQLEALGLETNQLTGSIPSSFGKLYKLNDLFLN 431

Query: 182 GNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEV 241
            NK  G IP S+GNL+ L   N   N L G+IP SLG+ Q+L++L L  N LSG IP E+
Sbjct: 432 MNKLSGTIPKSLGNLSALGRCNLRLNNLTGAIPPSLGESQSLLMLALSQNQLSGAIPKEL 491

Query: 242 IGLSSLSIYLDLSQNQL 258
           + +SSLSI LDLS+N L
Sbjct: 492 LSISSLSIALDLSENYL 508

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
TAIR|locus:2075661	1025	AT3G47110 [Arabidopsis thalian	0.968	0.243	0.411	1.9e-41
TAIR|locus:2079142	1010	AT3G47570 [Arabidopsis thalian	0.972	0.248	0.375	2.2e-40
TAIR|locus:2149922	1031	EFR "EF-TU receptor" [Arabidop	0.968	0.242	0.387	1.3e-39
TAIR|locus:2075631	1009	AT3G47090 [Arabidopsis thalian	0.957	0.244	0.390	2.6e-39
TAIR|locus:2079157	1011	AT3G47580 [Arabidopsis thalian	0.953	0.243	0.389	2.6e-39
UNIPROTKB|O24435	813	O24435 "Receptor kinase-like p	0.992	0.314	0.352	1.2e-37
UNIPROTKB|Q40640	1025	Xa21 "Receptor kinase-like pro	0.972	0.244	0.367	6.6e-35
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.965	0.264	0.357	2.9e-33
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.965	0.253	0.357	8.4e-33
TAIR|locus:2102499	964	AT3G56370 [Arabidopsis thalian	0.879	0.235	0.369	1.6e-31

TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)]

 Score = 450 (163.5 bits), Expect = 1.9e-41, P = 1.9e-41
 Identities = 104/253 (41%), Positives = 146/253 (57%)

Query:     7 NQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVP-SL 65
             N   G+L  D G  LPNL+ L +  N FTG IP ++SN S+LR+L I  N  +GK+P S 
Sbjct:   259 NSFSGTLRPDFGSLLPNLQILYMGINSFTGTIPETLSNISSLRQLDIPSNHLTGKIPLSF 318

Query:    66 ENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFST 125
               L  L  + ++ N LGNY   D L+F+ +L N S+L+ L +  N  GG LP  + N ST
Sbjct:   319 GRLQNLLLLGLNNNSLGNYSSGD-LDFLGALTNCSQLQYLNVGFNKLGGQLPVFIANLST 377

Query:   126 RLGILSVAENQLFGNIPSGXXXXXXXXXXXXXXXQFTSRIPGSIGDLQKLQMLGLNGNKF 185
             +L  LS+  N + G+IP G                 T ++P S+G+L +L+ + L  N  
Sbjct:   378 QLTELSLGGNLISGSIPHGIGNLVSLQTLDLGENLLTGKLPPSLGELSELRKVLLYSNGL 437

Query:   186 LGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLS 245
              GEIPSS+GN++ L  L    N  EGSIPSSLG C  L+ L+L  N L+G+IP E++ L 
Sbjct:   438 SGEIPSSLGNISGLTYLYLLNNSFEGSIPSSLGSCSYLLDLNLGTNKLNGSIPHELMELP 497

Query:   246 SLSIYLDLSQNQL 258
             SL + L++S N L
Sbjct:   498 SL-VVLNVSFNLL 509

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)]

 Score = 440 (159.9 bits), Expect = 2.2e-40, P = 2.2e-40
 Identities = 95/253 (37%), Positives = 141/253 (55%)

Query:     6 FNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSL 65
             +N   G L  DLG  LPNL   N+ GN FTG IP ++SN S L  L + +N  +G +P+ 
Sbjct:   243 YNHFSGRLRPDLGILLPNLLSFNMGGNYFTGSIPTTLSNISTLERLGMNENNLTGSIPTF 302

Query:    66 ENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFST 125
              N+  L+ + +  N LG+   +D LEF+ SL N ++LE L I  N  GG LP ++ N S 
Sbjct:   303 GNVPNLKLLFLHTNSLGSDSSRD-LEFLTSLTNCTQLETLGIGRNRLGGDLPISIANLSA 361

Query:   126 RLGILSVAENQLFGNIPSGXXXXXXXXXXXXXXXQFTSRIPGSIGDLQKLQMLGLNGNKF 185
             +L  L +    + G+IP                   +  +P S+G L  L+ L L  N+ 
Sbjct:   362 KLVTLDLGGTLISGSIPYDIGNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRL 421

Query:   186 LGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLS 245
              G IP+ IGN+T+L TL+ + N  EG +P+SLG C +L+ L + +N L+GTIP E++ + 
Sbjct:   422 SGGIPAFIGNMTMLETLDLSNNGFEGIVPTSLGNCSHLLELWIGDNKLNGTIPLEIMKIQ 481

Query:   246 SLSIYLDLSQNQL 258
              L + LD+S N L
Sbjct:   482 QL-LRLDMSGNSL 493

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 433 (157.5 bits), Expect = 1.3e-39, P = 1.3e-39
 Identities = 98/253 (38%), Positives = 134/253 (52%)

Query:     7 NQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVP-SL 65
             N   G+L +D G+ LPNL  L L  NQFTG IP +++N S+L    I  N  SG +P S 
Sbjct:   251 NSFSGNLRADFGYLLPNLRRLLLGTNQFTGAIPKTLANISSLERFDISSNYLSGSIPLSF 310

Query:    66 ENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFST 125
               L  L  + I  N LGN      LEF+ ++ N ++LE L +  N  GG LP ++ N ST
Sbjct:   311 GKLRNLWWLGIRNNSLGN-NSSSGLEFIGAVANCTQLEYLDVGYNRLGGELPASIANLST 369

Query:   126 RLGILSVAENQLFGNIPSGXXXXXXXXXXXXXXXQFTSRIPGSIGDLQKLQMLGLNGNKF 185
              L  L + +N + G IP                   +  +P S G L  LQ++ L  N  
Sbjct:   370 TLTSLFLGQNLISGTIPHDIGNLVSLQELSLETNMLSGELPVSFGKLLNLQVVDLYSNAI 429

Query:   186 LGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLS 245
              GEIPS  GN+T L  L+   N   G IP SLG+C+ L+ L +  N L+GTIP E++ + 
Sbjct:   430 SGEIPSYFGNMTRLQKLHLNSNSFHGRIPQSLGRCRYLLDLWMDTNRLNGTIPQEILQIP 489

Query:   246 SLSIYLDLSQNQL 258
             SL+ Y+DLS N L
Sbjct:   490 SLA-YIDLSNNFL 501

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0002764 "immune response-regulating signaling pathway" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0019199 "transmembrane receptor protein kinase activity" evidence=TAS

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 2.6e-39, P = 2.6e-39
 Identities = 100/256 (39%), Positives = 145/256 (56%)

Query:     7 NQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKV-PS- 64
             N   G+L  D G  LPN+  L+L GN  TG IP +++N S L    IGKN  +G + P+ 
Sbjct:   244 NGFSGNLKPDFGNLLPNIHELSLHGNFLTGAIPTTLANISTLEMFGIGKNRMTGSISPNF 303

Query:    65 --LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGN 122
               LENLH L+   ++ N LG+Y   D L F+++L N S L  L +S N  GG LP ++ N
Sbjct:   304 GKLENLHYLE---LANNSLGSYSFGD-LAFLDALTNCSHLHGLSVSYNRLGGALPTSIVN 359

Query:   123 FSTRLGILSVAENQLFGNIPSGXXXXXXXXXXXXXXXQFTSRIPGSIGDLQKLQMLGLNG 182
              ST L +L++  N ++G+IP                   T  +P S+G+L  L  L L  
Sbjct:   360 MSTELTVLNLKGNLIYGSIPHDIGNLIGLQSLLLADNLLTGPLPTSLGNLVGLGELILFS 419

Query:   183 NKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVI 242
             N+F GEIPS IGNLT L+ L  + N  EG +P SLG C +++ L +  N L+GTIP E++
Sbjct:   420 NRFSGEIPSFIGNLTQLVKLYLSNNSFEGIVPPSLGDCSHMLDLQIGYNKLNGTIPKEIM 479

Query:   243 GLSSLSIYLDLSQNQL 258
              + +L ++L++  N L
Sbjct:   480 QIPTL-VHLNMESNSL 494

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 2.6e-39, P = 2.6e-39
 Identities = 97/249 (38%), Positives = 138/249 (55%)

Query:    11 GSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKV-PSLENLH 69
             GSL  D G  LPN+  LNL  N   G IP ++SN S L++  I KN  +G + P+   + 
Sbjct:   248 GSLKPDFGNLLPNIRELNLGENDLVGAIPTTLSNISTLQKFGINKNMMTGGIYPNFGKVP 307

Query:    70 KLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGI 129
              LQ + +S+N LG+Y   D LEF++SL N + L+LL +     GG LP ++ N ST L  
Sbjct:   308 SLQYLDLSENPLGSYTFGD-LEFIDSLTNCTHLQLLSVGYTRLGGALPTSIANMSTELIS 366

Query:   130 LSVAENQLFGNIPSGXXXXXXXXXXXXXXXQFTSRIPGSIGDLQKLQMLGLNGNKFLGEI 189
             L++  N  FG+IP                   T  +P S+G L +L +L L  N+  GEI
Sbjct:   367 LNLIGNHFFGSIPQDIGNLIGLQRLQLGKNMLTGPLPTSLGKLLRLGLLSLYSNRMSGEI 426

Query:   190 PSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSI 249
             PS IGNLT L  L  + N  EG +P SLGKC +++ L +  N L+GTIP E++ + +L +
Sbjct:   427 PSFIGNLTQLEILYLSNNSFEGIVPPSLGKCSHMLDLRIGYNKLNGTIPKEIMQIPTL-V 485

Query:   250 YLDLSQNQL 258
              L +  N L
Sbjct:   486 NLSMEGNSL 494

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 412 (150.1 bits), Expect = 1.2e-37, P = 1.2e-37
 Identities = 91/258 (35%), Positives = 143/258 (55%)

Query:     2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGK 61
             F+   N+L G+LP++    LP+L+ + +  NQF G IP SI NASN+    IG N FSG 
Sbjct:   227 FEVISNKLSGTLPTNAFSNLPSLQEVYMYYNQFHGRIPASIGNASNISIFTIGLNSFSGV 286

Query:    62 VP-SLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAV 120
             VP  +  +  LQR+ + +  L    E ++ +F+ +L N S L+ +++    FGG+LP++V
Sbjct:   287 VPPEIGRMRNLQRLELPET-LSEAEETNDWKFMTALTNCSNLQEVELGGCKFGGVLPDSV 345

Query:   121 GNFSTRLGILSVAENQLFGNIPSGXXXXXXXXXXXXXXXQFTSRIPGSIGDLQKLQMLGL 180
              N S+ L  LS+ +N++ G++P                   T  +P S   L+ L+ L +
Sbjct:   346 SNLSSSLVSLSIRDNKISGSLPRDIGNLVNLQYLSLANNSLTGSLPSSFSKLKNLRRLTV 405

Query:   181 NGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSE 240
             + NK +G +P +IGNLT L  +    N   G+IPS+LG    L  ++L +NN  G IP E
Sbjct:   406 DNNKLIGSLPLTIGNLTQLTNMEVQFNAFGGTIPSTLGNLTKLFQINLGHNNFIGQIPIE 465

Query:   241 VIGLSSLSIYLDLSQNQL 258
             +  + +LS  LD+S N L
Sbjct:   466 IFSIPALSEILDVSHNNL 483

GO:0004672 "protein kinase activity" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 389 (142.0 bits), Expect = 6.6e-35, P = 6.6e-35
 Identities = 93/253 (36%), Positives = 138/253 (54%)

Query:     7 NQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-L 65
             N+L G +P++   TL  LE +++  N+F G IP S++NAS+L  + I  N FSG + S  
Sbjct:   258 NKLGGMIPTNAFKTLHLLEVIDMGTNRFHGKIPASVANASHLTVIQIYGNLFSGIITSGF 317

Query:    66 ENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFST 125
               L  L  + + +N L    E+D+  F++ L N S+L+ L + +NN GG+LP +  N ST
Sbjct:   318 GRLRNLTELYLWRN-LFQTREQDDWGFISDLTNCSKLQTLNLGENNLGGVLPNSFSNLST 376

Query:   126 RLGILSVAENQLFGNIPSGXXXXXXXXXXXXXXXQFTSRIPGSIGDLQKLQMLGLNGNKF 185
              L  L++  N++ G+IP                  F   +P S+G L+ L +L    N  
Sbjct:   377 SLSFLALELNKITGSIPKDIGNLIGLQHLYLCNNNFRGSLPSSLGRLKNLGILLAYENNL 436

Query:   186 LGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLS 245
              G IP +IGNLT L  L    N   G IP +L    NL+ L L  NNLSG IPSE+  + 
Sbjct:   437 SGSIPLAIGNLTELNILLLGTNKFSGWIPYTLSNLTNLLSLGLSTNNLSGPIPSELFNIQ 496

Query:   246 SLSIYLDLSQNQL 258
             +LSI +++S+N L
Sbjct:   497 TLSIMINVSKNNL 509

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 2.9e-33, P = 2.9e-33
 Identities = 93/260 (35%), Positives = 131/260 (50%)

Query:     1 DFDFPFNQLQGSLPSDLG-FTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFS 59
             + D   + L GS  S+   F L NL  L+L  N   G IP SI N S+L  L +  N F 
Sbjct:   103 ELDLSCSWLYGSFHSNSSLFRLQNLRVLDLTQNDLDGEIPSSIGNLSHLTSLHLSYNQFL 162

Query:    60 GKVPS-LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPE 118
             G +PS +ENL +L  + +S N           +  +S+ N S L  L++S N F G +P 
Sbjct:   163 GLIPSSIENLSRLTSLHLSSNQFSG-------QIPSSIGNLSHLTSLELSSNQFSGQIPS 215

Query:   119 AVGNFSTRLGILSVAENQLFGNIPSGXXXXXXXXXXXXXXXQFTSRIPGSIGDLQKLQML 178
             ++GN S  L  LS+  N  FG IPS                 F   IP S G+L +L +L
Sbjct:   216 SIGNLSN-LTFLSLPSNDFFGQIPSSIGNLARLTYLYLSYNNFVGEIPSSFGNLNQLIVL 274

Query:   179 GLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIP 238
              ++ NK  G +P S+ NLT L  L  + N   G+IP+++    NL+  +  NN  +GT+P
Sbjct:   275 QVDSNKLSGNVPISLLNLTRLSALLLSHNQFTGTIPNNISLLSNLMDFEASNNAFTGTLP 334

Query:   239 SEVIGLSSLSIYLDLSQNQL 258
             S +  +  L I LDLS NQL
Sbjct:   335 SSLFNIPPL-IRLDLSDNQL 353

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 369 (135.0 bits), Expect = 8.4e-33, P = 8.4e-33
 Identities = 94/263 (35%), Positives = 136/263 (51%)

Query:     1 DFDFPFNQLQGSLPSDLG-FTLPNLE---GLNLAGNQFTGPIPVSISNASNLRELMIGKN 56
             + D  F+ L+G L S+   F LP L     L+L+ N F G IP S+   SNL  L + +N
Sbjct:    87 ELDLSFSCLRGQLNSNSSLFRLPQLRFLTTLDLSNNDFIGQIPSSLETLSNLTTLDLSRN 146

Query:    57 GFSGKVPS-LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGM 115
              FSG++PS + NL  L  V  S N+          +  +SL   S L    +S NNF G 
Sbjct:   147 HFSGRIPSSIGNLSHLIFVDFSHNNFSG-------QIPSSLGYLSHLTSFNLSYNNFSGR 199

Query:   116 LPEAVGNFSTRLGILSVAENQLFGNIPSGXXXXXXXXXXXXXXXQFTSRIPGSIGDLQKL 175
             +P ++GN S  L  L ++ N  FG +PS                 F  +IP S+G+L  L
Sbjct:   200 VPSSIGNLSY-LTTLRLSRNSFFGELPSSLGSLFHLTDLILDTNHFVGKIPSSLGNLSHL 258

Query:   176 QMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSG 235
               + L+ N F+GEIP S+GNL+ L +   ++N + G IPSS G    L +L++ +N LSG
Sbjct:   259 TSIDLHKNNFVGEIPFSLGNLSCLTSFILSDNNIVGEIPSSFGNLNQLDILNVKSNKLSG 318

Query:   236 TIPSEVIGLSSLSIYLDLSQNQL 258
             + P  ++ L  LS  L L  N+L
Sbjct:   319 SFPIALLNLRKLST-LSLFNNRL 340

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2102499 AT3G56370 [Arabidopsis thaliana (taxid:3702)]

 Score = 357 (130.7 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 88/238 (36%), Positives = 130/238 (54%)

Query:     3 DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKV 62
             D   N L GSLP +      +L  L+LA N+ TG IPVSIS+ S+L  L +  NGFSG +
Sbjct:   124 DLSSNGLSGSLPDEFFRQCGSLRVLSLAKNKLTGKIPVSISSCSSLAALNLSSNGFSGSM 183

Query:    63 P-SLENLHKLQRVIISQNHL-GNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAV 120
             P  + +L+ L+ + +S+N L G + EK     ++ L N   L  L +S N   G +P  +
Sbjct:   184 PLGIWSLNTLRSLDLSRNELEGEFPEK-----IDRLNN---LRALDLSRNRLSGPIPSEI 235

Query:   121 GNFSTRLGILSVAENQLFGNIPSGXXXXXXXXXXXXXXXQFTSRIPGSIGDLQKLQMLGL 180
             G+    L  + ++EN L G++P+                     +P  IG+++ L+ L L
Sbjct:   236 GSCML-LKTIDLSENSLSGSLPNTFQQLSLCYSLNLGKNALEGEVPKWIGEMRSLETLDL 294

Query:   181 NGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIP 238
             + NKF G++P SIGNL  L  LNF+ N L GS+P S   C NL+ LDL  N+L+G +P
Sbjct:   295 SMNKFSGQVPDSIGNLLALKVLNFSGNGLIGSLPVSTANCINLLALDLSGNSLTGKLP 352

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0000272 "polysaccharide catabolic process" evidence=RCA

GO:0005982 "starch metabolic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008356 "asymmetric cell division" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0048653 "anther development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00080286 hypothetical protein (1023 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	258
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-33
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-33
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-31
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-31
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-30
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-29
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-29
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-15
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	6e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-04

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  128 bits (323), Expect = 1e-33
 Identities = 95/243 (39%), Positives = 128/243 (52%), Gaps = 15/243 (6%)

Query: 19  FTLPNLEGLNLAGNQFTGPIPVSISN-ASNLRELMIGKNGFSGKVP--SLENLHKLQRVI 75
           F LP ++ +NL+ NQ +GPIP  I   +S+LR L +  N F+G +P  S+ NL  L    
Sbjct: 90  FRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLD--- 146

Query: 76  ISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAEN 135
           +S N L         E  N + + S L++L +  N   G +P ++ N  T L  L++A N
Sbjct: 147 LSNNMLSG-------EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL-TSLEFLTLASN 198

Query: 136 QLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGN 195
           QL G IP  L  + +L+ + L  N  +  IP  IG L  L  L L  N   G IPSS+GN
Sbjct: 199 QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN 258

Query: 196 LTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQ 255
           L  L  L   +N L G IP S+   Q LI LDL +N+LSG IP  VI L +L I L L  
Sbjct: 259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEI-LHLFS 317

Query: 256 NQL 258
           N  
Sbjct: 318 NNF 320

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  127 bits (321), Expect = 2e-33
 Identities = 87/252 (34%), Positives = 125/252 (49%), Gaps = 35/252 (13%)

Query: 7   NQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLE 66
           N   GS+P   G  +PNLE L+L+ N  +G IP  I + S+L+ L +G N   GK+P   
Sbjct: 128 NNFTGSIPR--GS-IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP--- 181

Query: 67  NLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTR 126
                                      NSL N + LE L ++ N   G +P  +G   + 
Sbjct: 182 ---------------------------NSLTNLTSLEFLTLASNQLVGQIPRELGQMKS- 213

Query: 127 LGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFL 186
           L  + +  N L G IP  +  L +L  LDL  N  T  IP S+G+L+ LQ L L  NK  
Sbjct: 214 LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273

Query: 187 GEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSS 246
           G IP SI +L  L++L+ ++N L G IP  + + QNL +L L++NN +G IP  +  L  
Sbjct: 274 GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPR 333

Query: 247 LSIYLDLSQNQL 258
           L + L L  N+ 
Sbjct: 334 LQV-LQLWSNKF 344

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  122 bits (307), Expect = 1e-31
 Identities = 90/253 (35%), Positives = 130/253 (51%), Gaps = 11/253 (4%)

Query: 7   NQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVP-SL 65
           NQL G +P +LG  + +L+ + L  N  +G IP  I   ++L  L +  N  +G +P SL
Sbjct: 198 NQLVGQIPRELG-QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL 256

Query: 66  ENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFST 125
            NL  LQ + + QN L             S+ +  +L  L +SDN+  G +PE V     
Sbjct: 257 GNLKNLQYLFLYQNKLSG-------PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQN 309

Query: 126 RLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKF 185
            L IL +  N   G IP  L +L  L++L L  N+F+  IP ++G    L +L L+ N  
Sbjct: 310 -LEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368

Query: 186 LGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLS 245
            GEIP  + +   L  L    N LEG IP SLG C++L  + L +N+ SG +PSE   L 
Sbjct: 369 TGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL- 427

Query: 246 SLSIYLDLSQNQL 258
            L  +LD+S N L
Sbjct: 428 PLVYFLDISNNNL 440

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  120 bits (303), Expect = 6e-31
 Identities = 91/253 (35%), Positives = 129/253 (50%), Gaps = 11/253 (4%)

Query: 6   FNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVP-S 64
           +N L G +P ++G  L +L  L+L  N  TGPIP S+ N  NL+ L + +N  SG +P S
Sbjct: 221 YNNLSGEIPYEIG-GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS 279

Query: 65  LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFS 124
           + +L KL  + +S N L   GE   L     ++    LE+L +  NNF G +P A+ +  
Sbjct: 280 IFSLQKLISLDLSDNSLS--GEIPEL-----VIQLQNLEILHLFSNNFTGKIPVALTSLP 332

Query: 125 TRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNK 184
            RL +L +  N+  G IP  L    NL +LDLS N  T  IP  +     L  L L  N 
Sbjct: 333 -RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS 391

Query: 185 FLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGL 244
             GEIP S+G    L  +   +N   G +PS   K   +  LD+ NNNL G I S    +
Sbjct: 392 LEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDM 451

Query: 245 SSLSIYLDLSQNQ 257
            SL + L L++N+
Sbjct: 452 PSLQM-LSLARNK 463

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  118 bits (297), Expect = 3e-30
 Identities = 79/251 (31%), Positives = 132/251 (52%), Gaps = 21/251 (8%)

Query: 7   NQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVP-SL 65
           N+  G +P +LG    NL  L+L+ N  TG IP  + ++ NL +L++  N   G++P SL
Sbjct: 342 NKFSGEIPKNLG-KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL 400

Query: 66  ENLHKLQRVIISQNHLGNYGEKD--NLEFVNSL----------VNASR-----LELLQIS 108
                L+RV +  N        +   L  V  L          +N+ +     L++L ++
Sbjct: 401 GACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLA 460

Query: 109 DNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGS 168
            N F G LP++ G  S RL  L ++ NQ  G +P  L +L  L  L LS N+ +  IP  
Sbjct: 461 RNKFFGGLPDSFG--SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDE 518

Query: 169 IGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDL 228
           +   +KL  L L+ N+  G+IP+S   + +L  L+ ++N L G IP +LG  ++L+ +++
Sbjct: 519 LSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNI 578

Query: 229 YNNNLSGTIPS 239
            +N+L G++PS
Sbjct: 579 SHNHLHGSLPS 589

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  116 bits (293), Expect = 1e-29
 Identities = 86/235 (36%), Positives = 119/235 (50%), Gaps = 13/235 (5%)

Query: 26  GLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYG 85
            ++L+G   +G I  +I     ++ + +  N  SG +P          +  + + L  Y 
Sbjct: 73  SIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIP--------DDIFTTSSSL-RYL 123

Query: 86  EKDNLEFVNSLVNAS--RLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPS 143
              N  F  S+   S   LE L +S+N   G +P  +G+FS  L +L +  N L G IP+
Sbjct: 124 NLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFS-SLKVLDLGGNVLVGKIPN 182

Query: 144 GLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLN 203
            L NL +LE L L+ NQ   +IP  +G ++ L+ + L  N   GEIP  IG LT L  L+
Sbjct: 183 SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD 242

Query: 204 FAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
              N L G IPSSLG  +NL  L LY N LSG IP  +  L  L I LDLS N L
Sbjct: 243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKL-ISLDLSDNSL 296

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  116 bits (291), Expect = 2e-29
 Identities = 87/263 (33%), Positives = 134/263 (50%), Gaps = 20/263 (7%)

Query: 3   DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKV 62
           D   N L G +P+D+G    +L+ L+L GN   G IP S++N ++L  L +  N   G++
Sbjct: 146 DLSNNMLSGEIPNDIGS-FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI 204

Query: 63  PS-LENLHKLQRVIISQNHL--------GNYGEKDNLEFV---------NSLVNASRLEL 104
           P  L  +  L+ + +  N+L        G     ++L+ V         +SL N   L+ 
Sbjct: 205 PRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQY 264

Query: 105 LQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSR 164
           L +  N   G +P ++ +   +L  L +++N L G IP  +  L NLE+L L  N FT +
Sbjct: 265 LFLYQNKLSGPIPPSIFSL-QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK 323

Query: 165 IPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLI 224
           IP ++  L +LQ+L L  NKF GEIP ++G    L  L+ + N L G IP  L    NL 
Sbjct: 324 IPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLF 383

Query: 225 VLDLYNNNLSGTIPSEVIGLSSL 247
            L L++N+L G IP  +    SL
Sbjct: 384 KLILFSNSLEGEIPKSLGACRSL 406

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 74.5 bits (183), Expect = 4e-15
 Identities = 51/138 (36%), Positives = 77/138 (55%), Gaps = 4/138 (2%)

Query: 122 NFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDL-QKLQMLGL 180
           N S+R+  + ++   + G I S +  L  ++ ++LS NQ +  IP  I      L+ L L
Sbjct: 66  NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125

Query: 181 NGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSE 240
           + N F G IP   G++  L TL+ + NML G IP+ +G   +L VLDL  N L G IP+ 
Sbjct: 126 SNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS 183

Query: 241 VIGLSSLSIYLDLSQNQL 258
           +  L+SL  +L L+ NQL
Sbjct: 184 LTNLTSLE-FLTLASNQL 200

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 73.7 bits (181), Expect = 6e-15
 Identities = 36/91 (39%), Positives = 52/91 (57%)

Query: 154 LDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSI 213
           L L        IP  I  L+ LQ + L+GN   G IP S+G++T L  L+ + N   GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 214 PSSLGKCQNLIVLDLYNNNLSGTIPSEVIGL 244
           P SLG+  +L +L+L  N+LSG +P+ + G 
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 70.3 bits (172), Expect = 9e-14
 Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 11/187 (5%)

Query: 7   NQLQGSLPSDLGFT-LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSL 65
           N   G LPS   FT LP +  L+++ N   G I     +  +L+ L + +N F G +P  
Sbjct: 414 NSFSGELPS--EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS 471

Query: 66  ENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFST 125
               +L+ + +S+N                L + S L  L++S+N   G +P+ + +   
Sbjct: 472 FGSKRLENLDLSRNQFSG-------AVPRKLGSLSELMQLKLSENKLSGEIPDELSS-CK 523

Query: 126 RLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKF 185
           +L  L ++ NQL G IP+    +  L  LDLS NQ +  IP ++G+++ L  + ++ N  
Sbjct: 524 KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583

Query: 186 LGEIPSS 192
            G +PS+
Sbjct: 584 HGSLPST 590

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 68.7 bits (168), Expect = 3e-13
 Identities = 37/86 (43%), Positives = 53/86 (61%), Gaps = 1/86 (1%)

Query: 134 ENQ-LFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSS 192
           +NQ L G IP+ +  L +L+ ++LSGN     IP S+G +  L++L L+ N F G IP S
Sbjct: 426 DNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES 485

Query: 193 IGNLTLLMTLNFAENMLEGSIPSSLG 218
           +G LT L  LN   N L G +P++LG
Sbjct: 486 LGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.5 bits (165), Expect = 7e-13
 Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 2/95 (2%)

Query: 114 GMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQ 173
           G +P  +      L  ++++ N + GNIP  L ++ +LE+LDLS N F   IP S+G L 
Sbjct: 432 GFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490

Query: 174 KLQMLGLNGNKFLGEIPSSIGNLTLLMT-LNFAEN 207
            L++L LNGN   G +P+++G   L     NF +N
Sbjct: 491 SLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.8 bits (150), Expect = 7e-11
 Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 1/81 (1%)

Query: 178 LGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTI 237
           LGL+     G IP+ I  L  L ++N + N + G+IP SLG   +L VLDL  N+ +G+I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 238 PSEVIGLSSLSIYLDLSQNQL 258
           P  +  L+SL I L+L+ N L
Sbjct: 483 PESLGQLTSLRI-LNLNGNSL 502

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 3/77 (3%)

Query: 7   NQ-LQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVP-S 64
           NQ L+G +P+D+   L +L+ +NL+GN   G IP S+ + ++L  L +  N F+G +P S
Sbjct: 427 NQGLRGFIPNDIS-KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES 485

Query: 65  LENLHKLQRVIISQNHL 81
           L  L  L+ + ++ N L
Sbjct: 486 LGQLTSLRILNLNGNSL 502

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.7 bits (111), Expect = 6e-06
 Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 1/58 (1%)

Query: 7   NQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS 64
           N ++G++P  LG ++ +LE L+L+ N F G IP S+   ++LR L +  N  SG+VP+
Sbjct: 452 NSIRGNIPPSLG-SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.4 bits (102), Expect = 6e-05
 Identities = 64/206 (31%), Positives = 91/206 (44%), Gaps = 14/206 (6%)

Query: 21  LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNH 80
           L NL  L+L  N  T   P+     SNL+EL +  N        L NL  L+ + +S N 
Sbjct: 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174

Query: 81  LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGN 140
           L         +    L N S L  L +S N     LP       + L  L ++ N +   
Sbjct: 175 L--------SDLPKLLSNLSNLNNLDLSGNKI-SDLP-PEIELLSALEELDLSNNSII-E 223

Query: 141 IPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLM 200
           + S L NL NL  L+LS N+    +P SIG+L  L+ L L+ N       SS+G+LT L 
Sbjct: 224 LLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNN--QISSISSLGSLTNLR 280

Query: 201 TLNFAENMLEGSIPSSLGKCQNLIVL 226
            L+ + N L  ++P        L +L
Sbjct: 281 ELDLSGNSLSNALPLIALLLLLLELL 306

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 66/262 (25%), Positives = 108/262 (41%), Gaps = 47/262 (17%)

Query: 22  PNLEGLNLAGNQFTGPIPVSI-------SNASNLRELMIGKNGFS-GKVPSLENLHK--- 70
           P+L+ L L+ N  TG IP  +       +    L+EL +  N         LE+L +   
Sbjct: 51  PSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSS 109

Query: 71  LQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGN---FSTRL 127
           LQ + ++ N LG+ G +   + +  L     LE L +  N   G   EA+      +  L
Sbjct: 110 LQELKLNNNGLGDRGLRLLAKGLKDL--PPALEKLVLGRNRLEGASCEALAKALRANRDL 167

Query: 128 GILSVAENQL----FGNIPSGLRNLVNLELLDLSGNQFT----SRIPGSIGDLQKLQMLG 179
             L++A N +       +  GL+   NLE+LDL+ N  T    S +  ++  L+ L++L 
Sbjct: 168 KELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLN 227

Query: 180 LNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNL---SGT 236
           L  N           NLT       A  +L  +I        +L+ L L  N++      
Sbjct: 228 LGDN-----------NLTDAGAAALASALLSPNI--------SLLTLSLSCNDITDDGAK 268

Query: 237 IPSEVIGLSSLSIYLDLSQNQL 258
             +EV+      + LDL  N+ 
Sbjct: 269 DLAEVLAEKESLLELDLRGNKF 290

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 9/90 (10%)

Query: 57  GFSGKVPS-LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGM 115
           G  G +P+ +  L  LQ + +S N +             SL + + LE+L +S N+F G 
Sbjct: 429 GLRGFIPNDISKLRHLQSINLSGNSIRG-------NIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 116 LPEAVGNFSTRLGILSVAENQLFGNIPSGL 145
           +PE++G   T L IL++  N L G +P+ L
Sbjct: 482 IPESLGQL-TSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 53/192 (27%), Positives = 87/192 (45%), Gaps = 14/192 (7%)

Query: 12  SLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKL 71
            +P  +G    NL+ L+L+ N+    +P  + N  NL+ L +  N  S     L NL  L
Sbjct: 130 DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNL 188

Query: 72  QRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILS 131
             + +S N + +   +  L      ++ S   ++++           ++ N    L  L 
Sbjct: 189 NNLDLSGNKISDLPPEIELLSALEELDLSNNSIIEL---------LSSLSNL-KNLSGLE 238

Query: 132 VAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPS 191
           ++ N+L  ++P  + NL NLE LDLS NQ +S    S+G L  L+ L L+GN     +P 
Sbjct: 239 LSNNKLE-DLPESIGNLSNLETLDLSNNQISS--ISSLGSLTNLRELDLSGNSLSNALPL 295

Query: 192 SIGNLTLLMTLN 203
               L LL  L 
Sbjct: 296 IALLLLLLELLL 307

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	258
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.96
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.96
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.94
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.94
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.86
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.86
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.85
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.82
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.81
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.8
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.8
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.78
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.77
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.77
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.76
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.75
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.74
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.66
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.66
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.65
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.49
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.31
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.29
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.28
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.28
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.27
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.21
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.2
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.19
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.16
PLN03150	623	hypothetical protein; Provisional	99.14
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.09
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.07
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.07
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.02
PLN03150	623	hypothetical protein; Provisional	98.95
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.77
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.73
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.7
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.65
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.63
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.63
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.61
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.57
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.56
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.53
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.45
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.26
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.25
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.19
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.15
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.13
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.09
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.04
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.01
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.9
PRK15386	426	type III secretion protein GogB; Provisional	97.89
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.81
KOG4341	483	consensus F-box protein containing LRR [General fu	97.76
KOG4341	483	consensus F-box protein containing LRR [General fu	97.75
PRK15386	426	type III secretion protein GogB; Provisional	97.75
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.71
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.55
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.18
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.07
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.89
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.65
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.52
KOG4308	478	consensus LRR-containing protein [Function unknown	95.89
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.82
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.78
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.66
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.41
KOG4308	478	consensus LRR-containing protein [Function unknown	94.31
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.02
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	91.57
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.33
smart00370	26	LRR Leucine-rich repeats, outliers.	91.33
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	84.75
KOG0473	326	consensus Leucine-rich repeat protein [Function un	84.01
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	80.54

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.96  E-value=7.3e-29  Score=226.70  Aligned_cols=236  Identities=37%  Similarity=0.581  Sum_probs=99.7

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEecccc
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNH   80 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~   80 (258)
                      |++++|.+++.+|..++.++.+|++|++++|.+++..|.  ..+++|++|++++|.+....+. +..+++|++|++++|.
T Consensus        98 L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~  175 (968)
T PLN00113         98 INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV  175 (968)
T ss_pred             EECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCc
Confidence            344555555555555444455555555555544433332  2234444444444444322222 4445555555555554


Q ss_pred             ccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCc
Q 048125           81 LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQ  160 (258)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  160 (258)
                      +..       ..+..+..+++|++|++++|.+.+.+|..+..+ .+|+.|++++|.+....|..++.+++|++|++++|.
T Consensus       176 l~~-------~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  247 (968)
T PLN00113        176 LVG-------KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM-KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN  247 (968)
T ss_pred             ccc-------cCChhhhhCcCCCeeeccCCCCcCcCChHHcCc-CCccEEECcCCccCCcCChhHhcCCCCCEEECcCce
Confidence            432       222333444444444444444443344333333 244444444444433334444444444444444444


Q ss_pred             cccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccc
Q 048125          161 FTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSE  240 (258)
Q Consensus       161 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~  240 (258)
                      +.+..|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..
T Consensus       248 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~  327 (968)
T PLN00113        248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA  327 (968)
T ss_pred             eccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh
Confidence            43333334444444444444444443333333333344444444444333333333333333333333333333333333


Q ss_pred             cccccCc
Q 048125          241 VIGLSSL  247 (258)
Q Consensus       241 ~~~~~~l  247 (258)
                      +..++++
T Consensus       328 ~~~l~~L  334 (968)
T PLN00113        328 LTSLPRL  334 (968)
T ss_pred             HhcCCCC
Confidence            3333333

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.96  E-value=1.2e-28  Score=225.25  Aligned_cols=227  Identities=36%  Similarity=0.603  Sum_probs=96.0

Q ss_pred             CCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEecccccc
Q 048125            4 FPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNHLG   82 (258)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~   82 (258)
                      +++|.+++.+|..+. ++++|++|++.+|.+.+..|..+.++++|++|++++|.+....+. +..+++|+.|++++|.+.
T Consensus       147 Ls~n~~~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  225 (968)
T PLN00113        147 LSNNMLSGEIPNDIG-SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS  225 (968)
T ss_pred             CcCCcccccCChHHh-cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC
Confidence            333333333343333 244444444444444434444444444444444444443322221 344444444444444433


Q ss_pred             CcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccc
Q 048125           83 NYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFT  162 (258)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  162 (258)
                      .       ..+..+..+++|++|++++|.+.+..|..+..+ ++|+.|++++|.+....|..+..+++|++|++++|.+.
T Consensus       226 ~-------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  297 (968)
T PLN00113        226 G-------EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL-KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS  297 (968)
T ss_pred             C-------cCChhHhcCCCCCEEECcCceeccccChhHhCC-CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence            2       222233444444444444444443444433333 24444444444443333444444444444444444444


Q ss_pred             cccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCcccccccc
Q 048125          163 SRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPS  239 (258)
Q Consensus       163 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~  239 (258)
                      +..|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..++.+++|+.+++++|++.+.+|.
T Consensus       298 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~  374 (968)
T PLN00113        298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE  374 (968)
T ss_pred             cCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCCh
Confidence            33444444444444444444444434444444444444444444444444444444444444444444444433333

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.94  E-value=5.9e-28  Score=196.70  Aligned_cols=254  Identities=23%  Similarity=0.232  Sum_probs=186.7

Q ss_pred             CCCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEeccc
Q 048125            1 DFDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQN   79 (258)
Q Consensus         1 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~   79 (258)
                      .||++.|.++ ++|...+..-.++++|++.+|.|+.....+|.++..|..|.++.|.++..+.. |..+++|+.|.|..|
T Consensus       153 slDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN  231 (873)
T KOG4194|consen  153 SLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN  231 (873)
T ss_pred             hhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc
Confidence            3678888888 88887777678899999999999988888888888999999999998887776 666888888888888


Q ss_pred             cccCcCCCccc----------------h-hhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccC
Q 048125           80 HLGNYGEKDNL----------------E-FVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIP  142 (258)
Q Consensus        80 ~~~~~~~~~~~----------------~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~  142 (258)
                      .+.-....+..                + ..-.|..+.++++|+++.|++.......++.+ ++|+.|+++.|.+..+.+
T Consensus       232 ~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL-t~L~~L~lS~NaI~rih~  310 (873)
T KOG4194|consen  232 RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL-TSLEQLDLSYNAIQRIHI  310 (873)
T ss_pred             ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccccc-chhhhhccchhhhheeec
Confidence            77643221000                0 00134455556666666665552222233333 567777777777766666


Q ss_pred             ccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCC---ccccc
Q 048125          143 SGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIP---SSLGK  219 (258)
Q Consensus       143 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~  219 (258)
                      ....-.++|++|++++|.++...++.|..+..|+.|.+++|.+...-..+|..+++|++||++.|.++..+.   ..+.+
T Consensus       311 d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~g  390 (873)
T KOG4194|consen  311 DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNG  390 (873)
T ss_pred             chhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhcc
Confidence            666667788888888888877777778888888888888888775555678888889999999988764333   34566


Q ss_pred             CcCCcEEeccCCccccccc-cccccccCcceeEecCCCCC
Q 048125          220 CQNLIVLDLYNNNLSGTIP-SEVIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       220 ~~~L~~L~l~~~~l~~~~~-~~~~~~~~l~~~L~l~~n~~  258 (258)
                      +++|+.|.+.||+|+ .++ .+|..+++| ++|||.+|.|
T Consensus       391 l~~LrkL~l~gNqlk-~I~krAfsgl~~L-E~LdL~~Nai  428 (873)
T KOG4194|consen  391 LPSLRKLRLTGNQLK-SIPKRAFSGLEAL-EHLDLGDNAI  428 (873)
T ss_pred             chhhhheeecCceee-ecchhhhccCccc-ceecCCCCcc
Confidence            899999999999999 555 688999999 9999999875

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.94  E-value=5.9e-28  Score=196.69  Aligned_cols=243  Identities=23%  Similarity=0.270  Sum_probs=186.6

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEecccc
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNH   80 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~   80 (258)
                      |.++.|.++ .+|...+.++++|+.|++..|.+.-+..-.|.+++.|+.|.+..|++...... |.++.++++|+|..|.
T Consensus       202 lkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~  280 (873)
T KOG4194|consen  202 LKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR  280 (873)
T ss_pred             eecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccch
Confidence            445555665 56666555566666666666655533344555666666666666666554443 6666677777777776


Q ss_pred             ccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCc
Q 048125           81 LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQ  160 (258)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  160 (258)
                      +.....       .-+.+++.|+.|+++.|.+...-++.|... ++|+.|++++|.+.+..+..|..+.+|++|.++.|.
T Consensus       281 l~~vn~-------g~lfgLt~L~~L~lS~NaI~rih~d~Wsft-qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns  352 (873)
T KOG4194|consen  281 LQAVNE-------GWLFGLTSLEQLDLSYNAIQRIHIDSWSFT-QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS  352 (873)
T ss_pred             hhhhhc-------ccccccchhhhhccchhhhheeecchhhhc-ccceeEeccccccccCChhHHHHHHHhhhhcccccc
Confidence            654321       246688999999999999986666666554 589999999999997778889999999999999999


Q ss_pred             cccccCCcccCccCCcEEEecCCcccccc---CCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCcccccc
Q 048125          161 FTSRIPGSIGDLQKLQMLGLNGNKFLGEI---PSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTI  237 (258)
Q Consensus       161 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~  237 (258)
                      ++.....+|..+.+|+.|++..|.+...+   ...|..++.|+.|++.||++.......+.+++.|++|++.+|.|.+.-
T Consensus       353 i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq  432 (873)
T KOG4194|consen  353 IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQ  432 (873)
T ss_pred             hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeec
Confidence            99888889999999999999999987644   345788999999999999998677788999999999999999999888


Q ss_pred             ccccccccCcceeEecCC
Q 048125          238 PSEVIGLSSLSIYLDLSQ  255 (258)
Q Consensus       238 ~~~~~~~~~l~~~L~l~~  255 (258)
                      +.+|..+ .| .+|.++.
T Consensus       433 ~nAFe~m-~L-k~Lv~nS  448 (873)
T KOG4194|consen  433 PNAFEPM-EL-KELVMNS  448 (873)
T ss_pred             ccccccc-hh-hhhhhcc
Confidence            8888888 77 7776653

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.86  E-value=4.3e-24  Score=176.15  Aligned_cols=247  Identities=31%  Similarity=0.411  Sum_probs=134.2

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccc
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHL   81 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~   81 (258)
                      ||+++|.++ ++|..+-. ..++-.|++++|+|..+...-|.++.-|-.|++++|.+...++....+..|+.|.+++|.+
T Consensus       108 lDLShNqL~-EvP~~LE~-AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL  185 (1255)
T KOG0444|consen  108 LDLSHNQLR-EVPTNLEY-AKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPL  185 (1255)
T ss_pred             eecchhhhh-hcchhhhh-hcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChh
Confidence            455666666 56665553 5556666666666654333334455555566666666666666566666666666666654


Q ss_pred             cCcCCC------------------ccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCc
Q 048125           82 GNYGEK------------------DNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPS  143 (258)
Q Consensus        82 ~~~~~~------------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~  143 (258)
                      ..+.-.                  ....++.++-.+.+|+.++++.|++. .+|+.+..+ ++|+.|++++|+++ .+.-
T Consensus       186 ~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l-~~LrrLNLS~N~it-eL~~  262 (1255)
T KOG0444|consen  186 NHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKL-RNLRRLNLSGNKIT-ELNM  262 (1255)
T ss_pred             hHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhh-hhhheeccCcCcee-eeec
Confidence            332100                  00123333444445555555555554 445544444 25555555555554 2222


Q ss_pred             cCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccc-cccCCCCCCCCCcceEecccccccccCCcccccCcC
Q 048125          144 GLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFL-GEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQN  222 (258)
Q Consensus       144 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  222 (258)
                      ....+.++++|+++.|.++ ..|.++..++.|+.|.+.+|+++ +-+|..++.+.+|+.+..++|.+. ..|..++.|..
T Consensus       263 ~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~k  340 (1255)
T KOG0444|consen  263 TEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVK  340 (1255)
T ss_pred             cHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHH
Confidence            2334445555555555555 45555555555665555555543 134555555666666666666554 55666666666


Q ss_pred             CcEEeccCCccccccccccccccCcceeEecCCCC
Q 048125          223 LIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQ  257 (258)
Q Consensus       223 L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~  257 (258)
                      |+.|.+..|++- .+|.++--++.+ ..||+..|+
T Consensus       341 L~kL~L~~NrLi-TLPeaIHlL~~l-~vLDlreNp  373 (1255)
T KOG0444|consen  341 LQKLKLDHNRLI-TLPEAIHLLPDL-KVLDLRENP  373 (1255)
T ss_pred             HHHhccccccee-echhhhhhcCCc-ceeeccCCc
Confidence            666666666665 566666666666 666666554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.86  E-value=1.3e-23  Score=164.58  Aligned_cols=249  Identities=29%  Similarity=0.391  Sum_probs=192.0

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccc
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHL   81 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~   81 (258)
                      |.+..|+++ .+|+.++.+++.+..|+++.++++ ..|+.++.++.|++|++++|.++..+..++.+ .|+.|-+.+|.+
T Consensus       233 lh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  233 LHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             HHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence            345667777 888888888999999999999988 68888888999999999999999988888888 899999988854


Q ss_pred             cCcC-----------------------------CCc-c----chhhhccccCCCCcEEEeeccccccccccccccccc--
Q 048125           82 GNYG-----------------------------EKD-N----LEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFST--  125 (258)
Q Consensus        82 ~~~~-----------------------------~~~-~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--  125 (258)
                      ..+-                             ..+ .    -.........-+.+.|++++-.++ .+|..++....  
T Consensus       310 rTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~  388 (565)
T KOG0472|consen  310 RTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSE  388 (565)
T ss_pred             HHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhc
Confidence            3220                             000 0    001112233345666777766666 56665554431  


Q ss_pred             ccceEEecccccC-----------------------CccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecC
Q 048125          126 RLGILSVAENQLF-----------------------GNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNG  182 (258)
Q Consensus       126 ~l~~L~l~~~~~~-----------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  182 (258)
                      -+..++++.|++.                       ...|..+..++++..|++++|.+. ..|..+..+-.|+.++++.
T Consensus       389 ~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~  467 (565)
T KOG0472|consen  389 IVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSF  467 (565)
T ss_pred             ceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccc
Confidence            1566666666532                       134444556788999999998887 6787888888899999999


Q ss_pred             CccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccccccccCcceeEecCCCCC
Q 048125          183 NKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       183 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~  258 (258)
                      |+++ .+|+.+.....++++..++|++....+..+..+.+|..|++.+|.+. .+|..+..+.++ ++|+++||||
T Consensus       468 NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL-~hLeL~gNpf  540 (565)
T KOG0472|consen  468 NRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNL-RHLELDGNPF  540 (565)
T ss_pred             cccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccce-eEEEecCCcc
Confidence            9888 88888888888999999999998666677899999999999999999 899999999999 9999999997

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.85  E-value=5.6e-24  Score=175.48  Aligned_cols=216  Identities=28%  Similarity=0.434  Sum_probs=178.1

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCC---------------------
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSG---------------------   60 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---------------------   60 (258)
                      |++++|++. +||...+.++..|-.|++++|.+. .+|..+..+.+|+.|++++|++..                     
T Consensus       131 LNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~Tq  208 (1255)
T KOG0444|consen  131 LNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQ  208 (1255)
T ss_pred             EEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccccc
Confidence            678899998 899998888999999999988877 455566677777777777776532                     


Q ss_pred             -----CCCCccccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEeccc
Q 048125           61 -----KVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAEN  135 (258)
Q Consensus        61 -----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~  135 (258)
                           .+..+..+.+|+.++++.|.+.        .+++.+..+++|+.|++++|.++ .+....... ..+++|++++|
T Consensus       209 RTl~N~Ptsld~l~NL~dvDlS~N~Lp--------~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W-~~lEtLNlSrN  278 (1255)
T KOG0444|consen  209 RTLDNIPTSLDDLHNLRDVDLSENNLP--------IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEW-ENLETLNLSRN  278 (1255)
T ss_pred             chhhcCCCchhhhhhhhhccccccCCC--------cchHHHhhhhhhheeccCcCcee-eeeccHHHH-hhhhhhccccc
Confidence                 2233455666777777777665        56778889999999999999998 554444444 37999999999


Q ss_pred             ccCCccCccCCCCCcccEEEeeCCccc-cccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCC
Q 048125          136 QLFGNIPSGLRNLVNLELLDLSGNQFT-SRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIP  214 (258)
Q Consensus       136 ~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  214 (258)
                      +.. .+|.++..+++|+.|...+|.+. .-+|..++.+.+|+.+...+|.+. ..|+.+..|.+|+.|.+..|++. .+|
T Consensus       279 QLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLP  355 (1255)
T KOG0444|consen  279 QLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLP  355 (1255)
T ss_pred             hhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-ech
Confidence            987 78999999999999999999775 235778899999999999999887 89999999999999999999988 799


Q ss_pred             cccccCcCCcEEeccCCc
Q 048125          215 SSLGKCQNLIVLDLYNNN  232 (258)
Q Consensus       215 ~~~~~~~~L~~L~l~~~~  232 (258)
                      +.+.-++.|..|++..|.
T Consensus       356 eaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  356 EAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             hhhhhcCCcceeeccCCc
Confidence            999999999999999984

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.82  E-value=1.7e-23  Score=164.00  Aligned_cols=236  Identities=30%  Similarity=0.426  Sum_probs=120.7

Q ss_pred             CCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEecccccc
Q 048125            3 DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLG   82 (258)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~   82 (258)
                      .+.+|.++ .+..++- ++..+.++++.++... ..|.++.++..++.++.++|++...+.++..+..|++++.++|.+.
T Consensus        51 ils~N~l~-~l~~dl~-nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~  127 (565)
T KOG0472|consen   51 ILSHNDLE-VLREDLK-NLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELK  127 (565)
T ss_pred             hhccCchh-hccHhhh-cccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccccee
Confidence            34455555 3344333 3555556666555554 3455555555555555655555555555555555555555555544


Q ss_pred             CcCCCccchhhhccccCCCCcEEEeecccccccccccccccc----------------------cccceEEecccccCCc
Q 048125           83 NYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFS----------------------TRLGILSVAENQLFGN  140 (258)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----------------------~~l~~L~l~~~~~~~~  140 (258)
                              ..++.+..+..++.++..+|++. .+|+.++...                      ..+++++...|... .
T Consensus       128 --------el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-t  197 (565)
T KOG0472|consen  128 --------ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-T  197 (565)
T ss_pred             --------ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-c
Confidence                    23334444444444444444444 3344333332                      24444444444333 3


Q ss_pred             cCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccC-CCCCCCCCcceEecccccccccCCccccc
Q 048125          141 IPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIP-SSIGNLTLLMTLNFAENMLEGSIPSSLGK  219 (258)
Q Consensus       141 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  219 (258)
                      +|..++.+.+|.-|++..|++. ..| .|.++..|+.+.++.|++. .+| +..+.++++..||+.+|.+. ..|..++-
T Consensus       198 lP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl  273 (565)
T KOG0472|consen  198 LPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL  273 (565)
T ss_pred             CChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHH
Confidence            4444444555555555555554 334 4455555555555555554 233 23345555666666666655 45555555


Q ss_pred             CcCCcEEeccCCccccccccccccccCcceeEecCCCCC
Q 048125          220 CQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       220 ~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~  258 (258)
                      +.+|.+||+++|.|+ ..|..++.+ .+ +.|-+.|||+
T Consensus       274 LrsL~rLDlSNN~is-~Lp~sLgnl-hL-~~L~leGNPl  309 (565)
T KOG0472|consen  274 LRSLERLDLSNNDIS-SLPYSLGNL-HL-KFLALEGNPL  309 (565)
T ss_pred             hhhhhhhcccCCccc-cCCcccccc-ee-eehhhcCCch
Confidence            566666666666666 455555555 55 5666666553

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.81  E-value=1.8e-22  Score=157.75  Aligned_cols=247  Identities=24%  Similarity=0.254  Sum_probs=178.8

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeec-ccCCCCCCC-ccccCCcceEEeccc
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGK-NGFSGKVPS-LENLHKLQRVIISQN   79 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~-~~~l~~L~~L~l~~~   79 (258)
                      +.+..|.|+ .+|...|..+++||+|++++|.|+.+.|++|.+++.+..|.+.+ |++++.+.. |+++..|+.|.+.-|
T Consensus        72 irLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan  150 (498)
T KOG4237|consen   72 IRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN  150 (498)
T ss_pred             EEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh
Confidence            456678888 88888888888999999998888888888888888888877766 888877776 888888888888877


Q ss_pred             cccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccC------------CccCccCCC
Q 048125           80 HLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLF------------GNIPSGLRN  147 (258)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~------------~~~~~~~~~  147 (258)
                      ++..       .....+..++++..|.+.+|.+. .++...+.....++.+.+..+...            ...+..++.
T Consensus       151 ~i~C-------ir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsg  222 (498)
T KOG4237|consen  151 HINC-------IRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSG  222 (498)
T ss_pred             hhcc-------hhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccc
Confidence            7765       34457888899999999988775 444422222234555555444310            000111110


Q ss_pred             CC----------------------cccEE---EeeCCccccccC-CcccCccCCcEEEecCCccccccCCCCCCCCCcce
Q 048125          148 LV----------------------NLELL---DLSGNQFTSRIP-GSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMT  201 (258)
Q Consensus       148 ~~----------------------~L~~L---~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  201 (258)
                      ..                      .++.+   -.+.+......| ..|..+++|+.|++++|.++++.+.+|....+++.
T Consensus       223 arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~e  302 (498)
T KOG4237|consen  223 ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQE  302 (498)
T ss_pred             ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhh
Confidence            00                      01111   111121222222 35788999999999999999888889999999999


Q ss_pred             EecccccccccCCcccccCcCCcEEeccCCccccccccccccccCcceeEecCCCCC
Q 048125          202 LNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       202 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~  258 (258)
                      |.+.+|++...-..++.++..|+.|++.+|+|+..-|-.|....++ .+|+|-+||+
T Consensus       303 L~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l-~~l~l~~Np~  358 (498)
T KOG4237|consen  303 LYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL-STLNLLSNPF  358 (498)
T ss_pred             hhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee-eeeehccCcc
Confidence            9999999986667788889999999999999997777888899999 9999998885

>PLN03210 Resistant to P

Probab=99.80  E-value=1.3e-18  Score=160.67  Aligned_cols=94  Identities=20%  Similarity=0.264  Sum_probs=49.1

Q ss_pred             cCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcC
Q 048125            6 FNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYG   85 (258)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~   85 (258)
                      ++.++ .+|..+.  +.+|++|++.++.+. .++..+..+++|+.|+++++......+.+..+++|+.|++.+|....  
T Consensus       598 ~~~l~-~lP~~f~--~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~--  671 (1153)
T PLN03210        598 KYPLR-CMPSNFR--PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLV--  671 (1153)
T ss_pred             CCCCC-CCCCcCC--ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCcc--
Confidence            33444 5555442  556666666666555 34445555666666666655433333345555666666666553221  


Q ss_pred             CCccchhhhccccCCCCcEEEeecc
Q 048125           86 EKDNLEFVNSLVNASRLELLQISDN  110 (258)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~~L~l~~~  110 (258)
                           .++..+..+++|+.|++++|
T Consensus       672 -----~lp~si~~L~~L~~L~L~~c  691 (1153)
T PLN03210        672 -----ELPSSIQYLNKLEDLDMSRC  691 (1153)
T ss_pred             -----ccchhhhccCCCCEEeCCCC
Confidence                 23334444555555555554

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.80  E-value=8.3e-22  Score=168.37  Aligned_cols=241  Identities=34%  Similarity=0.431  Sum_probs=159.7

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccc
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHL   81 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~   81 (258)
                      ++++++.++ .+|.++. .|.+|+.+...++.+. ..|..+.....|+.|...+|.+...++...++..|++|++..|.+
T Consensus       246 ~dis~n~l~-~lp~wi~-~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L  322 (1081)
T KOG0618|consen  246 LDISHNNLS-NLPEWIG-ACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNL  322 (1081)
T ss_pred             eecchhhhh-cchHHHH-hcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccc
Confidence            445555555 5554444 3555555555555553 344444455555555555555555555555555666666666655


Q ss_pred             cCcCCCccchhhhccccCC-CCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCc
Q 048125           82 GNYGEKDNLEFVNSLVNAS-RLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQ  160 (258)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  160 (258)
                      ....+.       .+.... +++.+..+.+.+. ..|..=....+.|+.|++.+|..++..-..+-+.++|+.|++++|.
T Consensus       323 ~~lp~~-------~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr  394 (1081)
T KOG0618|consen  323 PSLPDN-------FLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR  394 (1081)
T ss_pred             cccchH-------HHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc
Confidence            543221       111111 1333443444333 2221111122467888888888876655567788899999999999


Q ss_pred             cccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccc
Q 048125          161 FTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSE  240 (258)
Q Consensus       161 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~  240 (258)
                      +.......++.+..|+.|+++||.++ .+|+....++.|++|...+|.+. ..| .+.++++|+.+|++.|.++......
T Consensus       395 L~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~  471 (1081)
T KOG0618|consen  395 LNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPE  471 (1081)
T ss_pred             cccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhh
Confidence            98666667788999999999999998 78888999999999999999998 677 7789999999999999999443333


Q ss_pred             cccccCcceeEecCCCC
Q 048125          241 VIGLSSLSIYLDLSQNQ  257 (258)
Q Consensus       241 ~~~~~~l~~~L~l~~n~  257 (258)
                      ....|.| +|||++||.
T Consensus       472 ~~p~p~L-kyLdlSGN~  487 (1081)
T KOG0618|consen  472 ALPSPNL-KYLDLSGNT  487 (1081)
T ss_pred             hCCCccc-ceeeccCCc
Confidence            3334889 999999985

>PLN03210 Resistant to P

Probab=99.78  E-value=6e-18  Score=156.41  Aligned_cols=237  Identities=24%  Similarity=0.326  Sum_probs=126.2

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCC-CCCCccccCCcceEEecccc
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSG-KVPSLENLHKLQRVIISQNH   80 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~   80 (258)
                      |++.+|.+. .++..+. .+++|+.+++.++.....+| .+..+++|+.|++++|.... .+..+..+++|+.|++++|.
T Consensus       616 L~L~~s~l~-~L~~~~~-~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~  692 (1153)
T PLN03210        616 LQMQGSKLE-KLWDGVH-SLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCE  692 (1153)
T ss_pred             EECcCcccc-ccccccc-cCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCC
Confidence            456666666 5665554 46777777776654333344 35566667777776655432 22235566666666666643


Q ss_pred             -ccCcCCCccchhhhccccCCCC---------------------cEEEeecccccccccccc------------------
Q 048125           81 -LGNYGEKDNLEFVNSLVNASRL---------------------ELLQISDNNFGGMLPEAV------------------  120 (258)
Q Consensus        81 -~~~~~~~~~~~~~~~~~~~~~L---------------------~~L~l~~~~~~~~~~~~~------------------  120 (258)
                       +...        +..+ .+++|                     +.|+++++.+. .+|..+                  
T Consensus       693 ~L~~L--------p~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l  762 (1153)
T PLN03210        693 NLEIL--------PTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKL  762 (1153)
T ss_pred             CcCcc--------CCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccc-cccccccccccccccccccchhhc
Confidence             2211        1111 23334                     44444444332 222111                  


Q ss_pred             -----------cccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCcccccc
Q 048125          121 -----------GNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEI  189 (258)
Q Consensus       121 -----------~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  189 (258)
                                 ...+++|+.|++++|.....+|..++.+++|++|++++|......|... .+++|++|++++|.....+
T Consensus       763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~  841 (1153)
T PLN03210        763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTF  841 (1153)
T ss_pred             cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccc
Confidence                       0011245555555554433455555555666666666553222334332 4555666666655433233


Q ss_pred             CCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccccccccCcceeEecCCCC
Q 048125          190 PSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQ  257 (258)
Q Consensus       190 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~  257 (258)
                      |..   .++|+.|++++|.+. .+|..+..+++|+.|++++|+-...++..+..++.+ +++++++|.
T Consensus       842 p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L-~~L~l~~C~  904 (1153)
T PLN03210        842 PDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHL-ETVDFSDCG  904 (1153)
T ss_pred             ccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCC-CeeecCCCc
Confidence            322   245667777777776 567777777888888888763333566667777777 777777763

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.77  E-value=6.9e-19  Score=153.80  Aligned_cols=227  Identities=22%  Similarity=0.368  Sum_probs=116.7

Q ss_pred             CCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEecccccc
Q 048125            3 DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLG   82 (258)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~   82 (258)
                      ++.++.++ .+|..+.   ++|+.|++.+|.++. +|..+.  .+|+.|++++|.+...+..+  ..+|+.|++++|.+.
T Consensus       184 ~L~~~~Lt-sLP~~Ip---~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~Ls~N~L~  254 (754)
T PRK15370        184 RLKILGLT-TIPACIP---EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLTSIPATL--PDTIQEMELSINRIT  254 (754)
T ss_pred             EeCCCCcC-cCCcccc---cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccccCChhh--hccccEEECcCCccC
Confidence            44455555 5555432   345566666555552 333322  35555555555554333222  124555555555444


Q ss_pred             CcCCCcc-------------chhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCC
Q 048125           83 NYGEKDN-------------LEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLV  149 (258)
Q Consensus        83 ~~~~~~~-------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~  149 (258)
                      .++....             ..++..+  .++|+.|++++|.+. .+|..+.   .+++.|++++|.+. .+|..+  .+
T Consensus       255 ~LP~~l~s~L~~L~Ls~N~L~~LP~~l--~~sL~~L~Ls~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt-~LP~~l--~~  325 (754)
T PRK15370        255 ELPERLPSALQSLDLFHNKISCLPENL--PEELRYLSVYDNSIR-TLPAHLP---SGITHLNVQSNSLT-ALPETL--PP  325 (754)
T ss_pred             cCChhHhCCCCEEECcCCccCcccccc--CCCCcEEECCCCccc-cCcccch---hhHHHHHhcCCccc-cCCccc--cc
Confidence            2211000             0011111  124555555555444 2332221   24555555555444 233222  24


Q ss_pred             cccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEecc
Q 048125          150 NLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLY  229 (258)
Q Consensus       150 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  229 (258)
                      +|++|++++|.+.. .|..+.  ++|+.|++++|.+. .+|..+.  ++|+.|++++|.+. .+|..+.  ..|+.|+++
T Consensus       326 sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs  396 (754)
T PRK15370        326 GLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQAS  396 (754)
T ss_pred             cceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhc
Confidence            67777777776663 444332  57777777777776 4555442  57777888877776 4454443  357777888


Q ss_pred             CCccccccccccc----cccCcceeEecCCCCC
Q 048125          230 NNNLSGTIPSEVI----GLSSLSIYLDLSQNQL  258 (258)
Q Consensus       230 ~~~l~~~~~~~~~----~~~~l~~~L~l~~n~~  258 (258)
                      +|++. .+|..+.    ..+.+ .+|+|.+|++
T Consensus       397 ~N~L~-~LP~sl~~~~~~~~~l-~~L~L~~Npl  427 (754)
T PRK15370        397 RNNLV-RLPESLPHFRGEGPQP-TRIIVEYNPF  427 (754)
T ss_pred             cCCcc-cCchhHHHHhhcCCCc-cEEEeeCCCc
Confidence            88777 4554333    34666 7888888875

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.77  E-value=4.6e-20  Score=148.96  Aligned_cols=252  Identities=24%  Similarity=0.325  Sum_probs=128.2

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCccccc----ccccccCCCCCcEEEeecccCCCCC-------CCccccCC
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGP----IPVSISNASNLRELMIGKNGFSGKV-------PSLENLHK   70 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~-------~~~~~l~~   70 (258)
                      |++..+.+++.--..++..+.+|+++++.++.++..    ++..+...+.+++++++++.+....       ..+..+++
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~   82 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG   82 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence            455666665332223333466677777777766432    3333445566777777666554201       11344567


Q ss_pred             cceEEeccccccCcCCCccchhhhccccCCCCcEEEeeccccccc----ccccccccccccceEEecccccCCc----cC
Q 048125           71 LQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGM----LPEAVGNFSTRLGILSVAENQLFGN----IP  142 (258)
Q Consensus        71 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~l~~L~l~~~~~~~~----~~  142 (258)
                      |++|++++|.+......   .+...... ++|++|++++|.+.+.    +...+....++++.+++++|.+...    ++
T Consensus        83 L~~L~l~~~~~~~~~~~---~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~  158 (319)
T cd00116          83 LQELDLSDNALGPDGCG---VLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA  158 (319)
T ss_pred             eeEEEccCCCCChhHHH---HHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence            77777776666531111   11111111 4477777776665421    1112222223567777776665421    22


Q ss_pred             ccCCCCCcccEEEeeCCccccc----cCCcccCccCCcEEEecCCcccc----ccCCCCCCCCCcceEecccccccccCC
Q 048125          143 SGLRNLVNLELLDLSGNQFTSR----IPGSIGDLQKLQMLGLNGNKFLG----EIPSSIGNLTLLMTLNFAENMLEGSIP  214 (258)
Q Consensus       143 ~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~  214 (258)
                      ..+..+++|++|++++|.+.+.    .+..+...++|++|++++|.+.+    .+...+..+++|++|++++|.+.+...
T Consensus       159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~  238 (319)
T cd00116         159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA  238 (319)
T ss_pred             HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence            3344455667777776666521    12223344567777776666542    223344556667777777766653222


Q ss_pred             ccccc-----CcCCcEEeccCCcccc----ccccccccccCcceeEecCCCCC
Q 048125          215 SSLGK-----CQNLIVLDLYNNNLSG----TIPSEVIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       215 ~~~~~-----~~~L~~L~l~~~~l~~----~~~~~~~~~~~l~~~L~l~~n~~  258 (258)
                      ..+..     .++|+.|++++|++++    .+...+..++.+ +++++++|.+
T Consensus       239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L-~~l~l~~N~l  290 (319)
T cd00116         239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESL-LELDLRGNKF  290 (319)
T ss_pred             HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCc-cEEECCCCCC
Confidence            22211     2566777777776651    222334444566 6667666653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.76  E-value=7.5e-18  Score=146.84  Aligned_cols=224  Identities=27%  Similarity=0.352  Sum_probs=131.7

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccc
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHL   81 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~   81 (258)
                      |+++++.++ ++|..+.   ++|+.|.+.+|.++. +|.   ..++|+.|++++|.+...+..   .++|+.|++.+|.+
T Consensus       206 LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L  274 (788)
T PRK15387        206 LNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPL  274 (788)
T ss_pred             EEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCcccCc---ccccceeeccCCch
Confidence            678888888 8888765   378888888888874 443   257888888888888765432   24666666666655


Q ss_pred             cCcCCCc---------cchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCccc
Q 048125           82 GNYGEKD---------NLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLE  152 (258)
Q Consensus        82 ~~~~~~~---------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~  152 (258)
                      ..++..-         ...+.......++|+.|++++|.+. .+|..    +..++.|++.+|.+. .+|.   ...+|+
T Consensus       275 ~~Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~-~Lp~l----p~~L~~L~Ls~N~L~-~LP~---lp~~Lq  345 (788)
T PRK15387        275 THLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLA-SLPAL----PSELCKLWAYNNQLT-SLPT---LPSGLQ  345 (788)
T ss_pred             hhhhhchhhcCEEECcCCccccccccccccceeECCCCccc-cCCCC----cccccccccccCccc-cccc---cccccc
Confidence            5332100         0000000001245677777776665 23321    112333333333332 1221   012444


Q ss_pred             EEEeeCCcccc-------------------ccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccC
Q 048125          153 LLDLSGNQFTS-------------------RIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSI  213 (258)
Q Consensus       153 ~L~l~~~~~~~-------------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  213 (258)
                      +|++++|.+..                   ..|..   ..+|+.|++++|.+. .+|..   .++|+.|++++|.+. .+
T Consensus       346 ~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sI  417 (788)
T PRK15387        346 ELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SL  417 (788)
T ss_pred             eEecCCCccCCCCCCCcccceehhhccccccCccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CC
Confidence            55555544442                   12221   235677777777766 34432   256777888888876 45


Q ss_pred             CcccccCcCCcEEeccCCccccccccccccccCcceeEecCCCCC
Q 048125          214 PSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       214 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~  258 (258)
                      |..   ..+|+.|++++|.|+ .+|..+..++.+ .+|+|++|+|
T Consensus       418 P~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L-~~LdLs~N~L  457 (788)
T PRK15387        418 PML---PSGLLSLSVYRNQLT-RLPESLIHLSSE-TTVNLEGNPL  457 (788)
T ss_pred             Ccc---hhhhhhhhhccCccc-ccChHHhhccCC-CeEECCCCCC
Confidence            543   246778888888888 788888889999 9999999986

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.75  E-value=5.1e-18  Score=148.40  Aligned_cols=203  Identities=22%  Similarity=0.369  Sum_probs=117.8

Q ss_pred             CCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCCC
Q 048125           22 PNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASR  101 (258)
Q Consensus        22 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~  101 (258)
                      .+...|++.+.+++. +|..+.  +.++.|++++|.+...+..+.  .+|+.|++++|.++.++.        .+  .+.
T Consensus       178 ~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~--------~l--~~~  242 (754)
T PRK15370        178 NNKTELRLKILGLTT-IPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPA--------TL--PDT  242 (754)
T ss_pred             cCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCCh--------hh--hcc
Confidence            357789999888874 565443  579999999999987665443  589999999999875432        11  235


Q ss_pred             CcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCccc-----------
Q 048125          102 LELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIG-----------  170 (258)
Q Consensus       102 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----------  170 (258)
                      |+.|++++|.+. .+|..+.   .+|+.|+++.|.+. .+|..+.  ++|++|++++|.+.. .|..+.           
T Consensus       243 L~~L~Ls~N~L~-~LP~~l~---s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N  314 (754)
T PRK15370        243 IQEMELSINRIT-ELPERLP---SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLPSGITHLNVQSN  314 (754)
T ss_pred             ccEEECcCCccC-cCChhHh---CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-CcccchhhHHHHHhcCC
Confidence            777777777766 5554432   35677777766665 3444332  366777777666653 232221           


Q ss_pred             --------CccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccccc
Q 048125          171 --------DLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVI  242 (258)
Q Consensus       171 --------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~  242 (258)
                              ..++|+.|++++|.++ .+|..+.  ++|+.|++++|.+. .+|..+.  ++|+.|++++|+++ .+|..+.
T Consensus       315 ~Lt~LP~~l~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~  387 (754)
T PRK15370        315 SLTALPETLPPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP  387 (754)
T ss_pred             ccccCCccccccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH
Confidence                    1134455555555444 2333222  45555555555554 3333321  45555555555555 3443332


Q ss_pred             cccCcceeEecCCCC
Q 048125          243 GLSSLSIYLDLSQNQ  257 (258)
Q Consensus       243 ~~~~l~~~L~l~~n~  257 (258)
                        ..+ ++|++++|.
T Consensus       388 --~sL-~~LdLs~N~  399 (754)
T PRK15370        388 --AAL-QIMQASRNN  399 (754)
T ss_pred             --HHH-HHHhhccCC
Confidence              134 555555554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.74  E-value=6.6e-20  Score=148.03  Aligned_cols=251  Identities=24%  Similarity=0.353  Sum_probs=175.1

Q ss_pred             CCCCcCcccCC----CCcchhccCCCCceEEecCCcccc------cccccccCCCCCcEEEeecccCCCCCCC-cccc--
Q 048125            2 FDFPFNQLQGS----LPSDLGFTLPNLEGLNLAGNQFTG------PIPVSISNASNLRELMIGKNGFSGKVPS-LENL--   68 (258)
Q Consensus         2 l~~~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l--   68 (258)
                      |++.++.+++.    ++..+. ..++++++++.++.+.+      ..+..+..+++|+.|++++|.+...... +..+  
T Consensus        28 l~l~~~~l~~~~~~~i~~~l~-~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  106 (319)
T cd00116          28 LRLEGNTLGEEAAKALASALR-PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLR  106 (319)
T ss_pred             EeecCCCCcHHHHHHHHHHHh-hCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhc
Confidence            56677777532    333333 57889999999887662      2344567789999999999998743332 4334  


Q ss_pred             -CCcceEEeccccccCcCCCccchhhhccccC-CCCcEEEeecccccccc----cccccccccccceEEecccccCCc--
Q 048125           69 -HKLQRVIISQNHLGNYGEKDNLEFVNSLVNA-SRLELLQISDNNFGGML----PEAVGNFSTRLGILSVAENQLFGN--  140 (258)
Q Consensus        69 -~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~----~~~~~~~~~~l~~L~l~~~~~~~~--  140 (258)
                       ++|++|++++|+++..+..   .+...+..+ ++|+.|++++|.+.+..    ...+... ..+++|++++|.+...  
T Consensus       107 ~~~L~~L~ls~~~~~~~~~~---~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~  182 (319)
T cd00116         107 SSSLQELKLNNNGLGDRGLR---LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRAN-RDLKELNLANNGIGDAGI  182 (319)
T ss_pred             cCcccEEEeeCCccchHHHH---HHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhC-CCcCEEECcCCCCchHHH
Confidence             4499999999988742211   334456667 89999999999887332    2222222 4799999999987632  


Q ss_pred             --cCccCCCCCcccEEEeeCCccccc----cCCcccCccCCcEEEecCCccccccCCCC-----CCCCCcceEecccccc
Q 048125          141 --IPSGLRNLVNLELLDLSGNQFTSR----IPGSIGDLQKLQMLGLNGNKFLGEIPSSI-----GNLTLLMTLNFAENML  209 (258)
Q Consensus       141 --~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~n~~  209 (258)
                        ++..+...++|++|++++|.+.+.    ....+..+++|++|++++|.+.+.....+     ...+.|++|++++|.+
T Consensus       183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i  262 (319)
T cd00116         183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI  262 (319)
T ss_pred             HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence              233345567999999999988632    23455678899999999998875222111     1347999999999998


Q ss_pred             cc----cCCcccccCcCCcEEeccCCccccc----cccccccc-cCcceeEecCCCCC
Q 048125          210 EG----SIPSSLGKCQNLIVLDLYNNNLSGT----IPSEVIGL-SSLSIYLDLSQNQL  258 (258)
Q Consensus       210 ~~----~~~~~~~~~~~L~~L~l~~~~l~~~----~~~~~~~~-~~l~~~L~l~~n~~  258 (258)
                      ++    .+...+..+++|+++++++|++++.    ....+... +.+ ++++|.+|++
T Consensus       263 ~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  319 (319)
T cd00116         263 TDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNEL-ESLWVKDDSF  319 (319)
T ss_pred             CcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCch-hhcccCCCCC
Confidence            62    2334455678999999999999854    34445555 567 9999999986

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.71  E-value=1.1e-19  Score=155.58  Aligned_cols=240  Identities=25%  Similarity=0.266  Sum_probs=180.1

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccc
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHL   81 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~   81 (258)
                      |+.++|.++...+.  + --.+|++++++++.++ .+|..+..+.+|+.++..+|.+...+.++....+|+.|...+|.+
T Consensus       224 L~a~~n~l~~~~~~--p-~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel  299 (1081)
T KOG0618|consen  224 LYADHNPLTTLDVH--P-VPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNEL  299 (1081)
T ss_pred             eeeccCcceeeccc--c-ccccceeeecchhhhh-cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhh
Confidence            34555655522221  1 1456777777777777 355777778888888888887766666677777788887777777


Q ss_pred             cCcCCCccchhhhccccCCCCcEEEeeccccccccccccccccc-ccceEEecccccCCccCccCCCCCcccEEEeeCCc
Q 048125           82 GNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFST-RLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQ  160 (258)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  160 (258)
                      ..        +++....+..|++|++..|.+. .+|+.+..... .++.++.+.+++.....-.-...+.|+.|.+.+|.
T Consensus       300 ~y--------ip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~  370 (1081)
T KOG0618|consen  300 EY--------IPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNH  370 (1081)
T ss_pred             hh--------CCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCc
Confidence            63        3344556778999999999887 66665444332 36777777776652221122346789999999999


Q ss_pred             cccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccc
Q 048125          161 FTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSE  240 (258)
Q Consensus       161 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~  240 (258)
                      +++..-..+...++|+.|++++|++.......+.+++.|+.|+++||.++ .+|..+..+..|++|...+|.|. ..| .
T Consensus       371 Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e  447 (1081)
T KOG0618|consen  371 LTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-E  447 (1081)
T ss_pred             ccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-h
Confidence            98766667888999999999999988443446789999999999999998 78899999999999999999999 778 8


Q ss_pred             cccccCcceeEecCCCCC
Q 048125          241 VIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       241 ~~~~~~l~~~L~l~~n~~  258 (258)
                      +..++.| +.+|||.|++
T Consensus       448 ~~~l~qL-~~lDlS~N~L  464 (1081)
T KOG0618|consen  448 LAQLPQL-KVLDLSCNNL  464 (1081)
T ss_pred             hhhcCcc-eEEecccchh
Confidence            8999999 9999999874

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.70  E-value=1.6e-19  Score=126.45  Aligned_cols=161  Identities=30%  Similarity=0.541  Sum_probs=101.6

Q ss_pred             ccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeeccccccccccccc
Q 048125           42 ISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVG  121 (258)
Q Consensus        42 ~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  121 (258)
                      +..+.+++.|.+++|++..+++.+..+.+|+.|++++|+++        ..+..++.+++|+.|++.-|.+. ..|..++
T Consensus        29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie--------~lp~~issl~klr~lnvgmnrl~-~lprgfg   99 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE--------ELPTSISSLPKLRILNVGMNRLN-ILPRGFG   99 (264)
T ss_pred             ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh--------hcChhhhhchhhhheecchhhhh-cCccccC
Confidence            44566777777777777777777777777777777777776        45566777777777777766665 6666666


Q ss_pred             ccccccceEEecccccCC-ccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcc
Q 048125          122 NFSTRLGILSVAENQLFG-NIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLM  200 (258)
Q Consensus       122 ~~~~~l~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  200 (258)
                      .++ .++.|++.+|...+ .+|..|..++.|+.|+++.|++. ..|..++.+++|+.|.+.+|.+. .+|..++.+..|+
T Consensus       100 s~p-~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lr  176 (264)
T KOG0617|consen  100 SFP-ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLR  176 (264)
T ss_pred             CCc-hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHH
Confidence            663 66667666665543 24555555556666666666555 55555556666666666665555 4555555555555


Q ss_pred             eEecccccccccCCc
Q 048125          201 TLNFAENMLEGSIPS  215 (258)
Q Consensus       201 ~L~l~~n~~~~~~~~  215 (258)
                      .|.+.+|+++ .+|.
T Consensus       177 elhiqgnrl~-vlpp  190 (264)
T KOG0617|consen  177 ELHIQGNRLT-VLPP  190 (264)
T ss_pred             HHhcccceee-ecCh
Confidence            6666666555 3443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.66  E-value=1.2e-18  Score=122.15  Aligned_cols=165  Identities=31%  Similarity=0.522  Sum_probs=145.5

Q ss_pred             ccccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCcc
Q 048125           65 LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSG  144 (258)
Q Consensus        65 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~  144 (258)
                      +..+.++..|.+++|+++        .+++.+..+.+|+.|++++|.+. .+|..+..+ ++++.|++.-|+.. ..|..
T Consensus        29 Lf~~s~ITrLtLSHNKl~--------~vppnia~l~nlevln~~nnqie-~lp~~issl-~klr~lnvgmnrl~-~lprg   97 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT--------VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSL-PKLRILNVGMNRLN-ILPRG   97 (264)
T ss_pred             ccchhhhhhhhcccCcee--------ecCCcHHHhhhhhhhhcccchhh-hcChhhhhc-hhhhheecchhhhh-cCccc
Confidence            345567888999999998        55667888999999999999998 888888877 48999999988876 78999


Q ss_pred             CCCCCcccEEEeeCCccc-cccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCC
Q 048125          145 LRNLVNLELLDLSGNQFT-SRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNL  223 (258)
Q Consensus       145 ~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L  223 (258)
                      |+.++.|+.||+.+|++. ...|+.|-.++.|+.|.+++|.+. .+|...+++.+|+.|.+.+|.+. .+|..++.+..|
T Consensus        98 fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~l  175 (264)
T KOG0617|consen   98 FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRL  175 (264)
T ss_pred             cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHH
Confidence            999999999999999886 367888889999999999999988 88999999999999999999988 799999999999


Q ss_pred             cEEeccCCcccccccccccc
Q 048125          224 IVLDLYNNNLSGTIPSEVIG  243 (258)
Q Consensus       224 ~~L~l~~~~l~~~~~~~~~~  243 (258)
                      ++|.++||+++ .+|..+..
T Consensus       176 relhiqgnrl~-vlppel~~  194 (264)
T KOG0617|consen  176 RELHIQGNRLT-VLPPELAN  194 (264)
T ss_pred             HHHhcccceee-ecChhhhh
Confidence            99999999999 77765543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.66  E-value=1.1e-18  Score=136.79  Aligned_cols=241  Identities=23%  Similarity=0.290  Sum_probs=174.1

Q ss_pred             CCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEecc-ccc
Q 048125            4 FPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQ-NHL   81 (258)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~-~~~   81 (258)
                      ....+++ ++|+.+.   +....+.+..|.|+.+.+.+|..+++|++|++++|.+....+. |.++..|.+|.+.+ |++
T Consensus        53 Cr~~GL~-eVP~~LP---~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI  128 (498)
T KOG4237|consen   53 CRGKGLT-EVPANLP---PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI  128 (498)
T ss_pred             ccCCCcc-cCcccCC---CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence            3445666 7887764   3567889999999988888999999999999999999877776 88999988887776 888


Q ss_pred             cCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCc-cCCCCCcccEEEeeCCc
Q 048125           82 GNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPS-GLRNLVNLELLDLSGNQ  160 (258)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~  160 (258)
                      ++...       ..|..+..++-|.+..|++.-.....+..+ +++..|.+.+|.+. .+++ .|..+..++++++..|+
T Consensus       129 ~~l~k-------~~F~gL~slqrLllNan~i~Cir~~al~dL-~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  129 TDLPK-------GAFGGLSSLQRLLLNANHINCIRQDALRDL-PSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             hhhhh-------hHhhhHHHHHHHhcChhhhcchhHHHHHHh-hhcchhcccchhhh-hhccccccchhccchHhhhcCc
Confidence            76432       357778888888888888763333334444 57888888888776 3444 67788888999888887


Q ss_pred             ccc------------ccCCcccCccC----------------------CcEE--Ee-cCCccccccC-CCCCCCCCcceE
Q 048125          161 FTS------------RIPGSIGDLQK----------------------LQML--GL-NGNKFLGEIP-SSIGNLTLLMTL  202 (258)
Q Consensus       161 ~~~------------~~~~~~~~~~~----------------------L~~L--~l-~~~~~~~~~~-~~~~~~~~L~~L  202 (258)
                      ...            ..+..++.+..                      ++.+  .+ +.+......| ..|+.+++|+++
T Consensus       200 ~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~l  279 (498)
T KOG4237|consen  200 FICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKL  279 (498)
T ss_pred             cccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEe
Confidence            321            11111111110                      1111  01 1111111222 347889999999


Q ss_pred             ecccccccccCCcccccCcCCcEEeccCCccccccccccccccCcceeEecCCCCC
Q 048125          203 NFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       203 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~  258 (258)
                      ++++|.+++.-+.+|.+..++++|++..|+|...-...|..+..| +.|+|++|.|
T Consensus       280 nlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L-~tL~L~~N~i  334 (498)
T KOG4237|consen  280 NLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGL-KTLSLYDNQI  334 (498)
T ss_pred             ccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccc-eeeeecCCee
Confidence            999999999999999999999999999999995555678888899 9999999975

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.65  E-value=9.1e-16  Score=133.99  Aligned_cols=210  Identities=31%  Similarity=0.375  Sum_probs=140.6

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEE--------------------EeecccCCCC
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLREL--------------------MIGKNGFSGK   61 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L--------------------~l~~~~~~~~   61 (258)
                      |++.+|+++ .+|.    ..++|++|++.+|.++. +|..   .++|+.|                    ++++|.+...
T Consensus       227 L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~L  297 (788)
T PRK15387        227 LVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSL  297 (788)
T ss_pred             EEccCCcCC-CCCC----CCCCCcEEEecCCccCc-ccCc---ccccceeeccCCchhhhhhchhhcCEEECcCCccccc
Confidence            567778888 6775    26788888888887774 3321   2344444                    4444444433


Q ss_pred             CCCccccCCcceEEeccccccCcCCCc-cch-------hhhccccC-CCCcEEEeecccccccccccccccccccceEEe
Q 048125           62 VPSLENLHKLQRVIISQNHLGNYGEKD-NLE-------FVNSLVNA-SRLELLQISDNNFGGMLPEAVGNFSTRLGILSV  132 (258)
Q Consensus        62 ~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~-------~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l  132 (258)
                      +.   ..++|+.|++++|.++..+..- .+.       ....+..+ ++|+.|++++|.+. .+|..    +.+++.|++
T Consensus       298 P~---~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~L  369 (788)
T PRK15387        298 PV---LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA-SLPTL----PSELYKLWA  369 (788)
T ss_pred             cc---cccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccC-CCCCC----Ccccceehh
Confidence            22   2367888888888877643210 000       00001111 25777888877776 44432    246777777


Q ss_pred             cccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEeccccccccc
Q 048125          133 AENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGS  212 (258)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  212 (258)
                      +.|.+. .+|..   .++|+.|++++|.+.. .|..   .++|+.|++++|.+. .+|..   ..+|+.|++++|.+. .
T Consensus       370 s~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~  436 (788)
T PRK15387        370 YNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-R  436 (788)
T ss_pred             hccccc-cCccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-c
Confidence            777665 34432   3579999999999984 4543   357999999999998 46653   357889999999998 7


Q ss_pred             CCcccccCcCCcEEeccCCcccccccccc
Q 048125          213 IPSSLGKCQNLIVLDLYNNNLSGTIPSEV  241 (258)
Q Consensus       213 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~  241 (258)
                      +|..++.+++|..+++++|.+++..+..+
T Consensus       437 LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        437 LPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             cChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            89889999999999999999997766655

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.49  E-value=1.3e-15  Score=117.83  Aligned_cols=234  Identities=22%  Similarity=0.309  Sum_probs=167.3

Q ss_pred             CCCCceEEecCCccccc----ccccccCCCCCcEEEeecccCC----CCCC-------CccccCCcceEEeccccccCcC
Q 048125           21 LPNLEGLNLAGNQFTGP----IPVSISNASNLRELMIGKNGFS----GKVP-------SLENLHKLQRVIISQNHLGNYG   85 (258)
Q Consensus        21 ~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~----~~~~-------~~~~l~~L~~L~l~~~~~~~~~   85 (258)
                      +..+..++++++.+...    +...+.+.+.|+..++++--..    ..+.       .+.+.++|++|+|++|.+.+.+
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            67788999999988754    3334556677887777663221    1111       1355679999999999988765


Q ss_pred             CCccchhhhccccCCCCcEEEeecccccccc----cc--------cccccccccceEEecccccCCc----cCccCCCCC
Q 048125           86 EKDNLEFVNSLVNASRLELLQISDNNFGGML----PE--------AVGNFSTRLGILSVAENQLFGN----IPSGLRNLV  149 (258)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~--------~~~~~~~~l~~L~l~~~~~~~~----~~~~~~~~~  149 (258)
                      ..   .+..-+.++..|++|+|.+|.+.-..    ..        ......+.|+++.+.+|...+.    +...|...+
T Consensus       109 ~~---~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~  185 (382)
T KOG1909|consen  109 IR---GLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP  185 (382)
T ss_pred             hH---HHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence            55   44555677889999999999775211    11        1112225899999998876533    445667778


Q ss_pred             cccEEEeeCCcccc----ccCCcccCccCCcEEEecCCcccc----ccCCCCCCCCCcceEecccccccccCCccc----
Q 048125          150 NLELLDLSGNQFTS----RIPGSIGDLQKLQMLGLNGNKFLG----EIPSSIGNLTLLMTLNFAENMLEGSIPSSL----  217 (258)
Q Consensus       150 ~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~----  217 (258)
                      .|+++.+.+|.|..    .....+.++++|+.|++.+|.++.    .+...++..++|+.+++++|.+.......+    
T Consensus       186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al  265 (382)
T KOG1909|consen  186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL  265 (382)
T ss_pred             ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence            99999999998862    234567889999999999998864    445667778899999999999875544433    


Q ss_pred             -ccCcCCcEEeccCCcccc----ccccccccccCcceeEecCCCCC
Q 048125          218 -GKCQNLIVLDLYNNNLSG----TIPSEVIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       218 -~~~~~L~~L~l~~~~l~~----~~~~~~~~~~~l~~~L~l~~n~~  258 (258)
                       ...+.|+.+.+.+|.|+.    .+..++...|.+ ..|+|++|.+
T Consensus       266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL-~kLnLngN~l  310 (382)
T KOG1909|consen  266 KESAPSLEVLELAGNEITRDAALALAACMAEKPDL-EKLNLNGNRL  310 (382)
T ss_pred             hccCCCCceeccCcchhHHHHHHHHHHHHhcchhh-HHhcCCcccc
Confidence             337899999999999972    234556678888 9999999864

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.31  E-value=5.2e-14  Score=115.61  Aligned_cols=169  Identities=27%  Similarity=0.451  Sum_probs=88.1

Q ss_pred             EEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccce
Q 048125           50 ELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGI  129 (258)
Q Consensus        50 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~  129 (258)
                      ..+++.|++..++.+++.+..|+.+.++.|.+.        .+++.+..+..|+.++++.|.+. .+|..++.++  |+.
T Consensus        79 ~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r--------~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp--Lkv  147 (722)
T KOG0532|consen   79 FADLSRNRFSELPEEACAFVSLESLILYHNCIR--------TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP--LKV  147 (722)
T ss_pred             hhhccccccccCchHHHHHHHHHHHHHHhccce--------ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc--cee
Confidence            445555555555555555555555555555554        33444555555555555555554 5555555442  555


Q ss_pred             EEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccc
Q 048125          130 LSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENML  209 (258)
Q Consensus       130 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~  209 (258)
                      |.++.|++. .+|+.++..+.|.+++.+.|.+. ..|..+..+..|+.|.+..|++. .+|+.+..+ .|.+||++.|.+
T Consensus       148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNki  223 (722)
T KOG0532|consen  148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKI  223 (722)
T ss_pred             EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCce
Confidence            555555554 44444455555555555555555 34444455555555555555544 334433322 245555555555


Q ss_pred             cccCCcccccCcCCcEEeccCCccc
Q 048125          210 EGSIPSSLGKCQNLIVLDLYNNNLS  234 (258)
Q Consensus       210 ~~~~~~~~~~~~~L~~L~l~~~~l~  234 (258)
                      . .+|..|..+..|++|.+.+|-+.
T Consensus       224 s-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  224 S-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             e-ecchhhhhhhhheeeeeccCCCC
Confidence            5 45555555555555555555555

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.29  E-value=6.2e-14  Score=115.18  Aligned_cols=212  Identities=24%  Similarity=0.364  Sum_probs=168.8

Q ss_pred             CCCcCcccCCCCcc-hhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccc
Q 048125            3 DFPFNQLQGSLPSD-LGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHL   81 (258)
Q Consensus         3 ~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~   81 (258)
                      .+++..+. ..|.. +.+.+..-...+++.|.+. .+|..++.+-.|+.+.+++|.+...+..+..+..|..++++.|.+
T Consensus        56 ~Ls~rrlk-~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nql  133 (722)
T KOG0532|consen   56 LLSGRRLK-EFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQL  133 (722)
T ss_pred             ccccchhh-cCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchh
Confidence            34444455 45542 2233555666777888777 677778888889999999999988888888999999999999988


Q ss_pred             cCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCcc
Q 048125           82 GNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQF  161 (258)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  161 (258)
                      +        ..+..++.+| |+.|.+++|+++ .+|..++ ....+..|+++.|.+. .+|..++.+.+|+.+.+..|++
T Consensus       134 S--------~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l  201 (722)
T KOG0532|consen  134 S--------HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHL  201 (722)
T ss_pred             h--------cCChhhhcCc-ceeEEEecCccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhh
Confidence            7        4566777777 899999999998 8888888 4468999999999876 6777788889999999999998


Q ss_pred             ccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCccccc---CcCCcEEeccCCc
Q 048125          162 TSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGK---CQNLIVLDLYNNN  232 (258)
Q Consensus       162 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~---~~~L~~L~l~~~~  232 (258)
                      . ..|..+..+ .|..|+++.|++. .+|-.|..+.+|++|-+.+|.++ ..|..++-   ..-.++|+.+-|.
T Consensus       202 ~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  202 E-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             h-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence            8 566666655 4999999999998 88999999999999999999998 67766643   3445678888773

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=4.8e-13  Score=106.72  Aligned_cols=209  Identities=22%  Similarity=0.222  Sum_probs=128.6

Q ss_pred             cCCCCceEEecCCccccccc-ccccCCCCCcEEEeecccCCCCCCC---ccccCCcceEEeccccccCcCCCccchhhhc
Q 048125           20 TLPNLEGLNLAGNQFTGPIP-VSISNASNLRELMIGKNGFSGKVPS---LENLHKLQRVIISQNHLGNYGEKDNLEFVNS   95 (258)
Q Consensus        20 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~   95 (258)
                      ++.+|+++.+.++.+..... .....|++++.|+++.|-+....+.   ...+++|+.|+++.|++......      ..
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s------~~  192 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS------NT  192 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc------cc
Confidence            46778888888776653221 2345678888888888877543222   56778888888888877543222      11


Q ss_pred             cccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCcccccc-CCcccCccC
Q 048125           96 LVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRI-PGSIGDLQK  174 (258)
Q Consensus        96 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~  174 (258)
                      ...++.|+.|.++.|.++-.-...+....|+++.|++.+|.....-......++.|++|++++|++-... -.....++.
T Consensus       193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~  272 (505)
T KOG3207|consen  193 TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPG  272 (505)
T ss_pred             hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccc
Confidence            2246677888888887652111112222357888888877421111122234567888888888765221 134566788


Q ss_pred             CcEEEecCCcccc-ccCCC-----CCCCCCcceEecccccccc-cCCcccccCcCCcEEeccCCccc
Q 048125          175 LQMLGLNGNKFLG-EIPSS-----IGNLTLLMTLNFAENMLEG-SIPSSLGKCQNLIVLDLYNNNLS  234 (258)
Q Consensus       175 L~~L~l~~~~~~~-~~~~~-----~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~~~l~  234 (258)
                      |..|+++.+.+.+ ..|+.     ...+++|+.|++..|.+.+ .....+...++|+.+.+..|.+.
T Consensus       273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             hhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            8888888887765 22333     3557888888888888742 22233455677777777777775

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=3.8e-13  Score=107.29  Aligned_cols=184  Identities=21%  Similarity=0.221  Sum_probs=77.7

Q ss_pred             CCCCcEEEeecccCCCCCC--CccccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeecccccccccccccc
Q 048125           45 ASNLRELMIGKNGFSGKVP--SLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGN  122 (258)
Q Consensus        45 ~~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  122 (258)
                      +.+|+.+.+.++.......  ....+++++.|++++|-+..+.     .+......+|+|+.|+++.|.+..-.......
T Consensus       120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~-----~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~  194 (505)
T KOG3207|consen  120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWF-----PVLKIAEQLPSLENLNLSSNRLSNFISSNTTL  194 (505)
T ss_pred             HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHH-----HHHHHHHhcccchhcccccccccCCccccchh
Confidence            4455555555555443332  1344555555555555544332     22333444555555555555443111111111


Q ss_pred             cccccceEEecccccCCc-cCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccC--CCCCCCCCc
Q 048125          123 FSTRLGILSVAENQLFGN-IPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIP--SSIGNLTLL  199 (258)
Q Consensus       123 ~~~~l~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L  199 (258)
                      ..+.++.|.+.+|.++.. +......+|+++.|++.+|...........-+..|+.|+|++|.+.+ .+  ...+.++.|
T Consensus       195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L  273 (505)
T KOG3207|consen  195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGL  273 (505)
T ss_pred             hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccch
Confidence            123455555555544311 11122334555555555552111111222233445555555555442 11  123445555


Q ss_pred             ceEeccccccccc-CCcc-----cccCcCCcEEeccCCccc
Q 048125          200 MTLNFAENMLEGS-IPSS-----LGKCQNLIVLDLYNNNLS  234 (258)
Q Consensus       200 ~~L~l~~n~~~~~-~~~~-----~~~~~~L~~L~l~~~~l~  234 (258)
                      ..|+++.+++... .|+.     ....++|++|++..|+|.
T Consensus       274 ~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  274 NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             hhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence            5555555554321 1111     122455555555555554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.27  E-value=6e-14  Score=108.81  Aligned_cols=232  Identities=19%  Similarity=0.256  Sum_probs=160.1

Q ss_pred             CCCCcCcccCCCCcchhc---cCCCCceEEecCCccccc-----------ccccccCCCCCcEEEeecccCCCCCCC---
Q 048125            2 FDFPFNQLQGSLPSDLGF---TLPNLEGLNLAGNQFTGP-----------IPVSISNASNLRELMIGKNGFSGKVPS---   64 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~-----------~~~~~~~~~~L~~L~l~~~~~~~~~~~---   64 (258)
                      +++++|.+-.+..+.+..   +-++|+..+++.- ++|.           +.+.+.++++|+.++|++|.+.....+   
T Consensus        35 l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~  113 (382)
T KOG1909|consen   35 LDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLE  113 (382)
T ss_pred             EeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHH
Confidence            455555554333333222   2456777776643 3332           233456788999999999998654443   


Q ss_pred             --ccccCCcceEEeccccccCcCCCcc------chhhhccccCCCCcEEEeeccccccc---ccccccccccccceEEec
Q 048125           65 --LENLHKLQRVIISQNHLGNYGEKDN------LEFVNSLVNASRLELLQISDNNFGGM---LPEAVGNFSTRLGILSVA  133 (258)
Q Consensus        65 --~~~l~~L~~L~l~~~~~~~~~~~~~------~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~l~~L~l~  133 (258)
                        +..+..|++|.+.+|.+.+.+....      +........-++|+++....|.+...   .....+...+.++.+.++
T Consensus       114 ~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~  193 (382)
T KOG1909|consen  114 ELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLS  193 (382)
T ss_pred             HHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEe
Confidence              5678899999999999887654420      11334456678899999999987522   122233344689999999


Q ss_pred             ccccCCc----cCccCCCCCcccEEEeeCCcccc----ccCCcccCccCCcEEEecCCccccccC----CCC-CCCCCcc
Q 048125          134 ENQLFGN----IPSGLRNLVNLELLDLSGNQFTS----RIPGSIGDLQKLQMLGLNGNKFLGEIP----SSI-GNLTLLM  200 (258)
Q Consensus       134 ~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~-~~~~~L~  200 (258)
                      .|.+...    ....+..+++|+.|++..|.++.    .....++.+++|+.|++++|-+...-.    +++ ...|.|+
T Consensus       194 qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~  273 (382)
T KOG1909|consen  194 QNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLE  273 (382)
T ss_pred             cccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCc
Confidence            9887543    34557789999999999998873    345567788999999999998865322    222 3479999


Q ss_pred             eEeccccccccc----CCcccccCcCCcEEeccCCccc
Q 048125          201 TLNFAENMLEGS----IPSSLGKCQNLIVLDLYNNNLS  234 (258)
Q Consensus       201 ~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~~~l~  234 (258)
                      .+.+.+|.|+..    +...+...+.|..|++.+|++.
T Consensus       274 vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  274 VLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             eeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            999999998642    2233455799999999999993

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.21  E-value=2e-11  Score=101.59  Aligned_cols=179  Identities=33%  Similarity=0.493  Sum_probs=121.0

Q ss_pred             ccCCCCCcEEEeecccCCCCCCCccccC-CcceEEeccccccCcCCCccchhhhccccCCCCcEEEeecccccccccccc
Q 048125           42 ISNASNLRELMIGKNGFSGKVPSLENLH-KLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAV  120 (258)
Q Consensus        42 ~~~~~~L~~L~l~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  120 (258)
                      +.....++.|++.++.+....+...... +|+.|++++|.+..        ++..+..++.|+.|+++.|++. .++...
T Consensus       112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~--------l~~~~~~l~~L~~L~l~~N~l~-~l~~~~  182 (394)
T COG4886         112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES--------LPSPLRNLPNLKNLDLSFNDLS-DLPKLL  182 (394)
T ss_pred             hhcccceeEEecCCcccccCccccccchhhcccccccccchhh--------hhhhhhccccccccccCCchhh-hhhhhh
Confidence            3445667788888887777666666664 78888888887763        2245667778888888888777 555443


Q ss_pred             cccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcc
Q 048125          121 GNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLM  200 (258)
Q Consensus       121 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  200 (258)
                      ... +.++.++++++.+. .+|........|+++.+++|.+. ..+..+..++++..+.+.++++. ..+..+..++.++
T Consensus       183 ~~~-~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~  258 (394)
T COG4886         183 SNL-SNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLE  258 (394)
T ss_pred             hhh-hhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccc
Confidence            233 46777888887776 44444344456778888877544 34556667777777777777765 3356667777788


Q ss_pred             eEecccccccccCCcccccCcCCcEEeccCCcccc
Q 048125          201 TLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSG  235 (258)
Q Consensus       201 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~  235 (258)
                      +|++++|.+.. ++. ++...+++.++++++.+..
T Consensus       259 ~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~  291 (394)
T COG4886         259 TLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSN  291 (394)
T ss_pred             eeccccccccc-ccc-ccccCccCEEeccCccccc
Confidence            88888888773 333 6677788888888877663

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.20  E-value=1.4e-11  Score=102.48  Aligned_cols=192  Identities=36%  Similarity=0.491  Sum_probs=146.8

Q ss_pred             EEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccC-CCCcEEEeecccccccccccccccccccc
Q 048125           50 ELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNA-SRLELLQISDNNFGGMLPEAVGNFSTRLG  128 (258)
Q Consensus        50 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~l~  128 (258)
                      .+....+.+.........++.++.+.+.++.++...        ...... ++|+.|++++|.+. .++..+..+ +.++
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~--------~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l-~~L~  166 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIP--------PLIGLLKSNLKELDLSDNKIE-SLPSPLRNL-PNLK  166 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCc--------cccccchhhcccccccccchh-hhhhhhhcc-cccc
Confidence            466666666444445556678999999999887543        233444 38999999999887 554445544 5899


Q ss_pred             eEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEeccccc
Q 048125          129 ILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENM  208 (258)
Q Consensus       129 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~  208 (258)
                      .|+++.|.+. .++......+.|+.+++++|.+. ..|........|+++.+++|.+. ..+..+..++.+..+.+.+|+
T Consensus       167 ~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~  243 (394)
T COG4886         167 NLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNK  243 (394)
T ss_pred             ccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCce
Confidence            9999999887 45555447789999999999998 55655445667999999999654 556677888889999999999


Q ss_pred             ccccCCcccccCcCCcEEeccCCccccccccccccccCcceeEecCCCCC
Q 048125          209 LEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       209 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~  258 (258)
                      +. ..+..++.+++++++++++|.++ .++. +.....+ ++|++++|.+
T Consensus       244 ~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l-~~L~~s~n~~  289 (394)
T COG4886         244 LE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNL-RELDLSGNSL  289 (394)
T ss_pred             ee-eccchhccccccceecccccccc-cccc-ccccCcc-CEEeccCccc
Confidence            87 44777788899999999999999 5555 8888899 9999998753

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.19  E-value=1.9e-11  Score=88.61  Aligned_cols=121  Identities=31%  Similarity=0.363  Sum_probs=42.8

Q ss_pred             ccceEEecccccCCccCccCC-CCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCC-CCCCCcceEe
Q 048125          126 RLGILSVAENQLFGNIPSGLR-NLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSI-GNLTLLMTLN  203 (258)
Q Consensus       126 ~l~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~  203 (258)
                      .++.|++.++.+.. + +.+. .+.+|+.|++++|.+... . .+..++.|++|++++|.+++ +.+.+ ..+++|++|+
T Consensus        20 ~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred             cccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEE
Confidence            56778888877752 2 2343 456778888888877732 2 46667788888888888773 33333 3567788888


Q ss_pred             ccccccccc-CCcccccCcCCcEEeccCCcccccc---ccccccccCcceeEe
Q 048125          204 FAENMLEGS-IPSSLGKCQNLIVLDLYNNNLSGTI---PSEVIGLSSLSIYLD  252 (258)
Q Consensus       204 l~~n~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~---~~~~~~~~~l~~~L~  252 (258)
                      +++|.|.+. ....+..+++|+.|++.+|.+...-   ...+..+|+| +.||
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~L-k~LD  146 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSL-KVLD  146 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT--SEET
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChh-heeC
Confidence            888887532 1234566788888888888776321   1345667777 7666

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.16  E-value=9e-12  Score=95.46  Aligned_cols=126  Identities=29%  Similarity=0.324  Sum_probs=66.6

Q ss_pred             ccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecc
Q 048125          126 RLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFA  205 (258)
Q Consensus       126 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  205 (258)
                      .++.++++.|.++ .+.+.+.-.|.++.|+++.|.+..+.  .+..+++|+.|++++|.+. .+..+-..+-++++|.++
T Consensus       285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence            3555566665554 34444555556666666666555321  1455566666666666555 233333445555666666


Q ss_pred             cccccccCCcccccCcCCcEEeccCCccccccc-cccccccCcceeEecCCCCC
Q 048125          206 ENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIP-SEVIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       206 ~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~l~~~L~l~~n~~  258 (258)
                      +|.+.  ....++.+-+|..|++++|+|..... ..++.+|-+ ..+.+.+||+
T Consensus       361 ~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCL-E~l~L~~NPl  411 (490)
T KOG1259|consen  361 QNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCL-ETLRLTGNPL  411 (490)
T ss_pred             hhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHH-HHHhhcCCCc
Confidence            66654  22344555556666666666652221 345555555 5555555553

>PLN03150 hypothetical protein; Provisional

Probab=99.14  E-value=7.6e-11  Score=102.92  Aligned_cols=107  Identities=35%  Similarity=0.577  Sum_probs=92.4

Q ss_pred             cccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEecc
Q 048125          150 NLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLY  229 (258)
Q Consensus       150 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  229 (258)
                      .++.|+++++.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            36788889988888888888899999999999999988888889999999999999999988899999999999999999


Q ss_pred             CCcccccccccccccc-CcceeEecCCCC
Q 048125          230 NNNLSGTIPSEVIGLS-SLSIYLDLSQNQ  257 (258)
Q Consensus       230 ~~~l~~~~~~~~~~~~-~l~~~L~l~~n~  257 (258)
                      +|++++.+|..+.... .+ ..+++.+|+
T Consensus       499 ~N~l~g~iP~~l~~~~~~~-~~l~~~~N~  526 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHR-ASFNFTDNA  526 (623)
T ss_pred             CCcccccCChHHhhccccC-ceEEecCCc
Confidence            9999988888776543 44 678888775

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.09  E-value=4.3e-11  Score=86.79  Aligned_cols=124  Identities=27%  Similarity=0.307  Sum_probs=37.2

Q ss_pred             CCCcEEEeecccCCCCCCCcc-ccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccc
Q 048125           46 SNLRELMIGKNGFSGKVPSLE-NLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFS  124 (258)
Q Consensus        46 ~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  124 (258)
                      .++++|++.++.+.... .++ .+.+|+.|++++|.++.+         +.+..+++|+.|++++|.+. .+...+...+
T Consensus        19 ~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l---------~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~l   87 (175)
T PF14580_consen   19 VKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKL---------EGLPGLPRLKTLDLSNNRIS-SISEGLDKNL   87 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S-----------TT----TT--EEE--SS----S-CHHHHHH-
T ss_pred             ccccccccccccccccc-chhhhhcCCCEEECCCCCCccc---------cCccChhhhhhcccCCCCCC-ccccchHHhC
Confidence            34555555555554432 232 345566666666665432         23444566666666666665 3332222222


Q ss_pred             cccceEEecccccCCcc-CccCCCCCcccEEEeeCCcccccc---CCcccCccCCcEEEe
Q 048125          125 TRLGILSVAENQLFGNI-PSGLRNLVNLELLDLSGNQFTSRI---PGSIGDLQKLQMLGL  180 (258)
Q Consensus       125 ~~l~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l  180 (258)
                      ++|+.|++++|.+.+.. -..+..+++|++|++.+|++....   ...+..+|+|+.||-
T Consensus        88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            46667777666664321 133455677777777777776321   123455677777764

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.07  E-value=2.8e-10  Score=68.19  Aligned_cols=59  Identities=37%  Similarity=0.511  Sum_probs=29.7

Q ss_pred             cccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEeccccc
Q 048125          150 NLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENM  208 (258)
Q Consensus       150 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~  208 (258)
                      +|++|++++|.+....+..|.++++|++|++++|.++...+.+|..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            44555555555544444455555555555555555544444455555555555555544

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.07  E-value=1.7e-10  Score=69.15  Aligned_cols=59  Identities=41%  Similarity=0.539  Sum_probs=29.0

Q ss_pred             CcceEecccccccccCCcccccCcCCcEEeccCCccccccccccccccCcceeEecCCCC
Q 048125          198 LLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQ  257 (258)
Q Consensus       198 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~  257 (258)
                      +|++|++++|.+....+..+..+++|++|++++|+++...+..|..++++ ++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L-~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNL-RYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTE-SEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCC-CEEeCcCCc
Confidence            34455555555543333444445555555555555553333445555555 555555554

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.02  E-value=7.6e-11  Score=90.44  Aligned_cols=190  Identities=24%  Similarity=0.246  Sum_probs=128.0

Q ss_pred             cccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCcc------c----------hhhhccccCCCC
Q 048125           39 PVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDN------L----------EFVNSLVNASRL  102 (258)
Q Consensus        39 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~------~----------~~~~~~~~~~~L  102 (258)
                      |..+.-+++|..+.++.|.-.........-|.|+.+......+........      .          .....+--.+.|
T Consensus       207 ~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~L  286 (490)
T KOG1259|consen  207 SFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQEL  286 (490)
T ss_pred             ccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhh
Confidence            333444566777777776544322222233556666655443332211100      0          011122334568


Q ss_pred             cEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecC
Q 048125          103 ELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNG  182 (258)
Q Consensus       103 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  182 (258)
                      +.+++++|.+. .+...+. +.|.++.|+++.|.+...  ..+..+++|++||+++|.+. ...++-..+.++++|.+.+
T Consensus       287 telDLS~N~I~-~iDESvK-L~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~  361 (490)
T KOG1259|consen  287 TELDLSGNLIT-QIDESVK-LAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQ  361 (490)
T ss_pred             hhccccccchh-hhhhhhh-hccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhh
Confidence            89999999887 5555544 346999999999988632  22667889999999999988 5566777888999999999


Q ss_pred             CccccccCCCCCCCCCcceEecccccccc-cCCcccccCcCCcEEeccCCcccc
Q 048125          183 NKFLGEIPSSIGNLTLLMTLNFAENMLEG-SIPSSLGKCQNLIVLDLYNNNLSG  235 (258)
Q Consensus       183 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~~~l~~  235 (258)
                      |.+.+.  ..++.+=+|..||+.+|+|.. .-...++++|.|+.+.+.+|.+..
T Consensus       362 N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  362 NKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            988632  456777889999999999863 233567899999999999998873

>PLN03150 hypothetical protein; Provisional

Probab=98.95  E-value=1.4e-09  Score=95.13  Aligned_cols=108  Identities=34%  Similarity=0.552  Sum_probs=95.7

Q ss_pred             cceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEeccc
Q 048125          127 LGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAE  206 (258)
Q Consensus       127 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  206 (258)
                      ++.|++.++.+...+|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|+.++.+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            67888888888777888888999999999999999888888899999999999999999989999999999999999999


Q ss_pred             ccccccCCcccccC-cCCcEEeccCCccc
Q 048125          207 NMLEGSIPSSLGKC-QNLIVLDLYNNNLS  234 (258)
Q Consensus       207 n~~~~~~~~~~~~~-~~L~~L~l~~~~l~  234 (258)
                      |.+.+.+|..+... .++..+++.+|...
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccc
Confidence            99998999887653 46778888888654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=5.2e-11  Score=91.10  Aligned_cols=194  Identities=20%  Similarity=0.158  Sum_probs=125.8

Q ss_pred             CCceEEecCCccccc-ccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEeccc-cccCcCCCccchhhhccccC
Q 048125           23 NLEGLNLAGNQFTGP-IPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQN-HLGNYGEKDNLEFVNSLVNA   99 (258)
Q Consensus        23 ~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~   99 (258)
                      .|++++++...++.. .-.-+..|.+|+-|.+.+..+.+.+.. +++..+|+.|+++.+ .++..      .....+..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n------~~~ll~~sc  259 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTEN------ALQLLLSSC  259 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchh------HHHHHHHhh
Confidence            488888888777632 222356788899999999888764444 788888999988875 23321      334456778


Q ss_pred             CCCcEEEeecccccccc-cccccccccccceEEecccccC---CccCccCCCCCcccEEEeeCCc-cccccCCcccCccC
Q 048125          100 SRLELLQISDNNFGGML-PEAVGNFSTRLGILSVAENQLF---GNIPSGLRNLVNLELLDLSGNQ-FTSRIPGSIGDLQK  174 (258)
Q Consensus       100 ~~L~~L~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~  174 (258)
                      ..|..|+++.|...... ...+....++++.|+++++.-.   ..+....+.++.+.+||++.|. +.......|..++.
T Consensus       260 s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~  339 (419)
T KOG2120|consen  260 SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY  339 (419)
T ss_pred             hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcch
Confidence            88999999988665322 2223333367888888876432   1222334678899999999874 33333345567888


Q ss_pred             CcEEEecCCccccccCC---CCCCCCCcceEecccccccccCCcccccCcCCc
Q 048125          175 LQMLGLNGNKFLGEIPS---SIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLI  224 (258)
Q Consensus       175 L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~  224 (258)
                      |++|.++.|..  ..|.   .+...|.|.+|++.++--.+...-....+++|+
T Consensus       340 L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lk  390 (419)
T KOG2120|consen  340 LQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLK  390 (419)
T ss_pred             heeeehhhhcC--CChHHeeeeccCcceEEEEeccccCchHHHHHHHhCcccc
Confidence            99999988763  3444   356788999999888754322222223455554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.73  E-value=7.3e-10  Score=92.63  Aligned_cols=175  Identities=27%  Similarity=0.319  Sum_probs=75.9

Q ss_pred             ccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeeccccccccccccc
Q 048125           42 ISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVG  121 (258)
Q Consensus        42 ~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  121 (258)
                      +..+.+|+.|++.+|.+......+..+++|++|++++|.++.+.         .+..++.|+.|++++|.+. .+.. +.
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~---------~l~~l~~L~~L~l~~N~i~-~~~~-~~  159 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE---------GLSTLTLLKELNLSGNLIS-DISG-LE  159 (414)
T ss_pred             cccccceeeeeccccchhhcccchhhhhcchheecccccccccc---------chhhccchhhheeccCcch-hccC-Cc
Confidence            34445555555555555443332444555555555555554321         2223333555555555444 2111 11


Q ss_pred             ccccccceEEecccccCCccC-ccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCC--C
Q 048125          122 NFSTRLGILSVAENQLFGNIP-SGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLT--L  198 (258)
Q Consensus       122 ~~~~~l~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~  198 (258)
                      . ...++.+++++|.+...-. . ...+.+++++.+.+|.+...  ..+..+..+..+++..|.+...-+  +....  +
T Consensus       160 ~-l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~  233 (414)
T KOG0531|consen  160 S-LKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEG--LNELVMLH  233 (414)
T ss_pred             c-chhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccC--cccchhHH
Confidence            1 1344555555554432111 0 23334455555555544321  112222233333444444432111  11112  2


Q ss_pred             cceEecccccccccCCcccccCcCCcEEeccCCccc
Q 048125          199 LMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLS  234 (258)
Q Consensus       199 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~  234 (258)
                      |+.+++++|++. ..+..+..+.++..+++..+++.
T Consensus       234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             HHHHhcccCccc-cccccccccccccccchhhcccc
Confidence            566666666665 23244455666666666666655

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.70  E-value=9.1e-10  Score=92.05  Aligned_cols=173  Identities=26%  Similarity=0.309  Sum_probs=73.7

Q ss_pred             CCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCC
Q 048125           21 LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNAS  100 (258)
Q Consensus        21 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  100 (258)
                      +.+++.+++..+.+..+.. .+..+.+|++|++++|.+.... .+..++.|+.|++.+|.+..+.         .+..++
T Consensus        94 ~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~---------~~~~l~  162 (414)
T KOG0531|consen   94 LKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDIS---------GLESLK  162 (414)
T ss_pred             ccceeeeeccccchhhccc-chhhhhcchheecccccccccc-chhhccchhhheeccCcchhcc---------CCccch
Confidence            4555555555555543211 1344555555555555554322 2334444555555555554332         222245


Q ss_pred             CCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCcc--CCcEE
Q 048125          101 RLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQ--KLQML  178 (258)
Q Consensus       101 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~L  178 (258)
                      .|+.+++++|.+...-+.... ...+++.+.+.++.+...  +.+.....+..+++..|.+....+  +....  +|+.+
T Consensus       163 ~L~~l~l~~n~i~~ie~~~~~-~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l  237 (414)
T KOG0531|consen  163 SLKLLDLSYNRIVDIENDELS-ELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLREL  237 (414)
T ss_pred             hhhcccCCcchhhhhhhhhhh-hccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccC--cccchhHHHHHH
Confidence            555555555554422110011 113455555555544311  112222233333444444442111  11111  25555


Q ss_pred             EecCCccccccCCCCCCCCCcceEeccccccc
Q 048125          179 GLNGNKFLGEIPSSIGNLTLLMTLNFAENMLE  210 (258)
Q Consensus       179 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  210 (258)
                      .+.++.+. ..+..+..+..+..+++.++.+.
T Consensus       238 ~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  238 YLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             hcccCccc-cccccccccccccccchhhcccc
Confidence            55555554 22234444555555555555543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.65  E-value=2.2e-10  Score=97.34  Aligned_cols=126  Identities=33%  Similarity=0.310  Sum_probs=85.8

Q ss_pred             ccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecc
Q 048125          126 RLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFA  205 (258)
Q Consensus       126 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  205 (258)
                      .|...++++|... .+...+.-++.++.|+++.|++++..  .++.++.|++|+|+.|+++ .+|..-..-.+|+.|+++
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lr  240 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLR  240 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhhheeeeec
Confidence            3455555555544 34455666778888888888887432  6777888888888888877 555433222348888888


Q ss_pred             cccccccCCcccccCcCCcEEeccCCccccccc-cccccccCcceeEecCCCCC
Q 048125          206 ENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIP-SEVIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       206 ~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~l~~~L~l~~n~~  258 (258)
                      +|.++  -...+.++.+|..||++.|-|.+.-. .-++.+..| ++|.|.|||+
T Consensus       241 nN~l~--tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L-~~L~LeGNPl  291 (1096)
T KOG1859|consen  241 NNALT--TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSL-IVLWLEGNPL  291 (1096)
T ss_pred             ccHHH--hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHH-HHHhhcCCcc
Confidence            88876  33456778888888888887774322 235667777 8888888875

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.63  E-value=2.5e-08  Score=89.72  Aligned_cols=92  Identities=25%  Similarity=0.325  Sum_probs=59.1

Q ss_pred             CCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccch
Q 048125           12 SLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLE   91 (258)
Q Consensus        12 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~   91 (258)
                      .++..++..+|.|+.|++++|.-.+.+|..++++-+|++|+++++.+...+..+..+..|.+|++..+....       .
T Consensus       561 ~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~-------~  633 (889)
T KOG4658|consen  561 EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLE-------S  633 (889)
T ss_pred             hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccc-------c
Confidence            455555666777777777776554567777777777777777777777666667777777777776654332       1


Q ss_pred             hhhccccCCCCcEEEeecc
Q 048125           92 FVNSLVNASRLELLQISDN  110 (258)
Q Consensus        92 ~~~~~~~~~~L~~L~l~~~  110 (258)
                      .+.....+++|++|.+...
T Consensus       634 ~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  634 IPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             ccchhhhcccccEEEeecc
Confidence            1223444667777776554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.63  E-value=9.2e-09  Score=79.02  Aligned_cols=184  Identities=16%  Similarity=0.110  Sum_probs=86.9

Q ss_pred             CCCCCcEEEeecccCCCCCCC---ccccCCcceEEeccccccCcCCCccchhhhcc-ccCCCCcEEEeeccccccccccc
Q 048125           44 NASNLRELMIGKNGFSGKVPS---LENLHKLQRVIISQNHLGNYGEKDNLEFVNSL-VNASRLELLQISDNNFGGMLPEA  119 (258)
Q Consensus        44 ~~~~L~~L~l~~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~  119 (258)
                      .+..++++++.+|.+++....   +..+|.|+.|++++|.+.+.        +... ....+|+++.+.+..+.-.....
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~--------I~~lp~p~~nl~~lVLNgT~L~w~~~~s  140 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD--------IKSLPLPLKNLRVLVLNGTGLSWTQSTS  140 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc--------cccCcccccceEEEEEcCCCCChhhhhh
Confidence            345566666666665432221   45556666666666655431        1111 23345555655555432111111


Q ss_pred             ccccccccceEEecccccCC--ccCccCC-CCCcccEEEeeCCcccc--ccCCcccCccCCcEEEecCCccccccC-CCC
Q 048125          120 VGNFSTRLGILSVAENQLFG--NIPSGLR-NLVNLELLDLSGNQFTS--RIPGSIGDLQKLQMLGLNGNKFLGEIP-SSI  193 (258)
Q Consensus       120 ~~~~~~~l~~L~l~~~~~~~--~~~~~~~-~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~  193 (258)
                      .-...|.+++|+++.|.+..  ...+... .-+.+++++..+|....  .....-+.++++..+.+..|.+++.-. ..+
T Consensus       141 ~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~s  220 (418)
T KOG2982|consen  141 SLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGS  220 (418)
T ss_pred             hhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccC
Confidence            22222455555555553211  0111111 12245555555554321  111222345666666676666654222 233


Q ss_pred             CCCCCcceEecccccccc-cCCcccccCcCCcEEeccCCcccc
Q 048125          194 GNLTLLMTLNFAENMLEG-SIPSSLGKCQNLIVLDLYNNNLSG  235 (258)
Q Consensus       194 ~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~~~l~~  235 (258)
                      ..++.+.-|+++.+.+.. ...+.+.++++|+-|.++++.+.+
T Consensus       221 e~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  221 EPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             CCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            445555666777776641 223345566777777777776653

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.61  E-value=8e-09  Score=79.34  Aligned_cols=210  Identities=17%  Similarity=0.151  Sum_probs=99.0

Q ss_pred             ccCCCCCcEEEeecccCCCCCCC--c-cccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeecccccccccc
Q 048125           42 ISNASNLRELMIGKNGFSGKVPS--L-ENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPE  118 (258)
Q Consensus        42 ~~~~~~L~~L~l~~~~~~~~~~~--~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  118 (258)
                      ++..+.++.+.+.++.+......  + .....++++++.+|.++++.     .+...+.++|.|+.|+++.|.+...+- 
T Consensus        41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWs-----eI~~ile~lP~l~~LNls~N~L~s~I~-  114 (418)
T KOG2982|consen   41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWS-----EIGAILEQLPALTTLNLSCNSLSSDIK-  114 (418)
T ss_pred             eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHH-----HHHHHHhcCccceEeeccCCcCCCccc-
Confidence            33344455555556555432221  2 23455666667666666554     233345566666777776665542211 


Q ss_pred             cccccccccceEEecccccCCc-cCccCCCCCcccEEEeeCCcccc--ccCCcccCc-cCCcEEEecCCcccc--ccCCC
Q 048125          119 AVGNFSTRLGILSVAENQLFGN-IPSGLRNLVNLELLDLSGNQFTS--RIPGSIGDL-QKLQMLGLNGNKFLG--EIPSS  192 (258)
Q Consensus       119 ~~~~~~~~l~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~-~~L~~L~l~~~~~~~--~~~~~  192 (258)
                      ..-....+++.|.+.+....-. ....+..+|.+++++++.|....  ...+..... +.++++....|....  ..-..
T Consensus       115 ~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l  194 (418)
T KOG2982|consen  115 SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKL  194 (418)
T ss_pred             cCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhH
Confidence            1111113566666655443211 22233455666666666663321  111111222 245555555543210  00011


Q ss_pred             CCCCCCcceEecccccccc-cCCcccccCcCCcEEeccCCcccc-ccccccccccCcceeEecCCCCC
Q 048125          193 IGNLTLLMTLNFAENMLEG-SIPSSLGKCQNLIVLDLYNNNLSG-TIPSEVIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       193 ~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~l~~~L~l~~n~~  258 (258)
                      -+-+|++..+-+..|++.. .........+.+..|+++.+.|.+ .--+.+...+.+ +-|.++.||+
T Consensus       195 ~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l-~dlRv~~~Pl  261 (418)
T KOG2982|consen  195 SRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQL-VDLRVSENPL  261 (418)
T ss_pred             HhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchh-heeeccCCcc
Confidence            1334556666666665531 222334445566666666666652 112345556666 6666666553

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=3.5e-10  Score=86.68  Aligned_cols=177  Identities=20%  Similarity=0.226  Sum_probs=116.8

Q ss_pred             CCcEEEeecccCCCCCCC--ccccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeeccc-cccccccccccc
Q 048125           47 NLRELMIGKNGFSGKVPS--LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNN-FGGMLPEAVGNF  123 (258)
Q Consensus        47 ~L~~L~l~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~  123 (258)
                      +|+++++++..++.....  +..+.+|+.|.+.++.+.+       .+...+..-..|+.++++.+. ++......++..
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD-------~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~s  258 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD-------PIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSS  258 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc-------HHHHHHhccccceeeccccccccchhHHHHHHHh
Confidence            588899988877643333  5677888889898888876       666677777889999988874 443333445555


Q ss_pred             ccccceEEecccccCCcc-CccCC-CCCcccEEEeeCCccc--c-ccCCcccCccCCcEEEecCCccc-cccCCCCCCCC
Q 048125          124 STRLGILSVAENQLFGNI-PSGLR-NLVNLELLDLSGNQFT--S-RIPGSIGDLQKLQMLGLNGNKFL-GEIPSSIGNLT  197 (258)
Q Consensus       124 ~~~l~~L~l~~~~~~~~~-~~~~~-~~~~L~~L~l~~~~~~--~-~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~  197 (258)
                      +..|..|+++-|...... ...+. .-+.++.|+++|+.-.  . ...-..+.++++.+|++++|-.. ...-.+|-+++
T Consensus       259 cs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~  338 (419)
T KOG2120|consen  259 CSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN  338 (419)
T ss_pred             hhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc
Confidence            567888888877553221 11111 2347788888876321  1 11223356888999999887542 22223456788


Q ss_pred             CcceEecccccccccCCcc---cccCcCCcEEeccCCc
Q 048125          198 LLMTLNFAENMLEGSIPSS---LGKCQNLIVLDLYNNN  232 (258)
Q Consensus       198 ~L~~L~l~~n~~~~~~~~~---~~~~~~L~~L~l~~~~  232 (258)
                      .|+++.++.|...  +|..   +...|+|.+|++.||-
T Consensus       339 ~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  339 YLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             hheeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence            8999999988753  3433   4567889999988873

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.56  E-value=2.6e-08  Score=89.54  Aligned_cols=104  Identities=19%  Similarity=0.168  Sum_probs=54.6

Q ss_pred             CCCCceEEecCCc--ccccccccccCCCCCcEEEeecccCC-CCCCCccccCCcceEEeccccccCcCCCccchhhhccc
Q 048125           21 LPNLEGLNLAGNQ--FTGPIPVSISNASNLRELMIGKNGFS-GKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLV   97 (258)
Q Consensus        21 ~~~L~~L~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   97 (258)
                      +++|++|-+..+.  +.......|..++.|+.|++++|.-. ..+..++.+-+||.|+++++.++        .++..+.
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~--------~LP~~l~  615 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS--------HLPSGLG  615 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc--------ccchHHH
Confidence            5556666666553  33223333555666666666654433 23333566666666666666555        3445555


Q ss_pred             cCCCCcEEEeecccccccccccccccccccceEEec
Q 048125           98 NASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVA  133 (258)
Q Consensus        98 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~  133 (258)
                      .+.+|.+|++..+.....++.....+ .+|++|.+.
T Consensus       616 ~Lk~L~~Lnl~~~~~l~~~~~i~~~L-~~Lr~L~l~  650 (889)
T KOG4658|consen  616 NLKKLIYLNLEVTGRLESIPGILLEL-QSLRVLRLP  650 (889)
T ss_pred             HHHhhheeccccccccccccchhhhc-ccccEEEee
Confidence            66666666666554432333322323 356666554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.53  E-value=1e-09  Score=93.50  Aligned_cols=153  Identities=25%  Similarity=0.269  Sum_probs=109.8

Q ss_pred             hhccccCCCCcEEEeecccccccccccccccccccceEEecc-----------cccCCccCccCCCCCcccEEEeeCCcc
Q 048125           93 VNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAE-----------NQLFGNIPSGLRNLVNLELLDLSGNQF  161 (258)
Q Consensus        93 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~-----------~~~~~~~~~~~~~~~~L~~L~l~~~~~  161 (258)
                      +..+..+.+|++|.+.++++..  ...+......|++|....           |..  .+..+ ..+-.|.+.+++.|.+
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascgg--d~~ns-~~Wn~L~~a~fsyN~L  176 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGG--DISNS-PVWNKLATASFSYNRL  176 (1096)
T ss_pred             CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhcc--ccccc-hhhhhHhhhhcchhhH
Confidence            4467778899999999998862  223333334555553322           111  11111 1234788889999988


Q ss_pred             ccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCcccccccccc
Q 048125          162 TSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEV  241 (258)
Q Consensus       162 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~  241 (258)
                      . .....++-++.++.|+++.|+++++  +.+.++++|++||+++|.+....-....+|. |..|.++||.+++  ..++
T Consensus       177 ~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~t--L~gi  250 (1096)
T KOG1859|consen  177 V-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTT--LRGI  250 (1096)
T ss_pred             H-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHh--hhhH
Confidence            7 5566778889999999999999854  3789999999999999999843333445555 9999999999883  3457


Q ss_pred             ccccCcceeEecCCCC
Q 048125          242 IGLSSLSIYLDLSQNQ  257 (258)
Q Consensus       242 ~~~~~l~~~L~l~~n~  257 (258)
                      ..+.+| ..||+++|-
T Consensus       251 e~LksL-~~LDlsyNl  265 (1096)
T KOG1859|consen  251 ENLKSL-YGLDLSYNL  265 (1096)
T ss_pred             Hhhhhh-hccchhHhh
Confidence            788999 999999984

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.45  E-value=1.2e-08  Score=77.46  Aligned_cols=44  Identities=23%  Similarity=0.331  Sum_probs=19.4

Q ss_pred             cccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeecccc
Q 048125           66 ENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNF  112 (258)
Q Consensus        66 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  112 (258)
                      -++|.|+.+++++|.+.+....   .+.+-+++.+.|.+|.+++|.+
T Consensus        89 lkcp~l~~v~LSDNAfg~~~~e---~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238          89 LKCPRLQKVDLSDNAFGSEFPE---ELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             hcCCcceeeeccccccCcccch---HHHHHHhcCCCceeEEeecCCC
Confidence            3445555555555544432222   2223344444455555555443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.26  E-value=9.3e-08  Score=72.72  Aligned_cols=228  Identities=20%  Similarity=0.234  Sum_probs=147.3

Q ss_pred             CCCCcCcccCCCCcchhc---cCCCCceEEecCCccccc-----------ccccccCCCCCcEEEeecccCCCCCCC---
Q 048125            2 FDFPFNQLQGSLPSDLGF---TLPNLEGLNLAGNQFTGP-----------IPVSISNASNLRELMIGKNGFSGKVPS---   64 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~-----------~~~~~~~~~~L~~L~l~~~~~~~~~~~---   64 (258)
                      +++++|-+..+..+.+..   +-.+|+..+++.- +++.           +.+.+.+|++|+..++++|.+....++   
T Consensus        35 vdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~  113 (388)
T COG5238          35 VDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELG  113 (388)
T ss_pred             EeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHH
Confidence            345555555343333222   2445666666543 2211           234467899999999999998654443   


Q ss_pred             --ccccCCcceEEeccccccCcCCCccchhh---------hccccCCCCcEEEeeccccccccccc----ccccccccce
Q 048125           65 --LENLHKLQRVIISQNHLGNYGEKDNLEFV---------NSLVNASRLELLQISDNNFGGMLPEA----VGNFSTRLGI  129 (258)
Q Consensus        65 --~~~l~~L~~L~l~~~~~~~~~~~~~~~~~---------~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~~l~~  129 (258)
                        +++...|.+|.+.+|.+.+.+..   ++.         .....-|.|+++....|++. ..+..    .......++.
T Consensus       114 d~is~~t~l~HL~l~NnGlGp~aG~---rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk~  189 (388)
T COG5238         114 DLISSSTDLVHLKLNNNGLGPIAGG---RIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHENLKE  189 (388)
T ss_pred             HHHhcCCCceeEEeecCCCCccchh---HHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCcee
Confidence              57778999999999998776543   333         34456788999999888775 32221    1122236788


Q ss_pred             EEecccccCCcc-----CccCCCCCcccEEEeeCCcccc----ccCCcccCccCCcEEEecCCccccccC----CCC--C
Q 048125          130 LSVAENQLFGNI-----PSGLRNLVNLELLDLSGNQFTS----RIPGSIGDLQKLQMLGLNGNKFLGEIP----SSI--G  194 (258)
Q Consensus       130 L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~--~  194 (258)
                      +.+..|.+....     -..+.++++|+.|++..|.++.    ....++..++.|+.|.+.+|-+...-.    ..|  .
T Consensus       190 vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~  269 (388)
T COG5238         190 VKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEK  269 (388)
T ss_pred             EEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhh
Confidence            888888776431     1234577899999999998863    234455677889999999987653222    122  3


Q ss_pred             CCCCcceEecccccccccCCcc-----c--ccCcCCcEEeccCCccc
Q 048125          195 NLTLLMTLNFAENMLEGSIPSS-----L--GKCQNLIVLDLYNNNLS  234 (258)
Q Consensus       195 ~~~~L~~L~l~~n~~~~~~~~~-----~--~~~~~L~~L~l~~~~l~  234 (258)
                      ..|+|+.|...+|.+.+..-..     +  .++|-|..+.+.||+++
T Consensus       270 ~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         270 FVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             cCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence            4688888888888764321111     1  34777888888888887

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.25  E-value=2.6e-06  Score=62.12  Aligned_cols=128  Identities=21%  Similarity=0.149  Sum_probs=87.3

Q ss_pred             cEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecC
Q 048125          103 ELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNG  182 (258)
Q Consensus       103 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  182 (258)
                      +.+++.+..+...  ..++....+...+++.+|.+.  ....|..+++|.+|.+.+|.|+.+.|..-..+++|..|.+.+
T Consensus        22 ~e~~LR~lkip~i--enlg~~~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn   97 (233)
T KOG1644|consen   22 RELDLRGLKIPVI--ENLGATLDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN   97 (233)
T ss_pred             cccccccccccch--hhccccccccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence            4455555544311  113333346777888888664  234567788999999999999877776656678899999999


Q ss_pred             Ccccccc-CCCCCCCCCcceEeccccccccc---CCcccccCcCCcEEeccCCccc
Q 048125          183 NKFLGEI-PSSIGNLTLLMTLNFAENMLEGS---IPSSLGKCQNLIVLDLYNNNLS  234 (258)
Q Consensus       183 ~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~~~~L~~L~l~~~~l~  234 (258)
                      |.+.+.. -+-+..||+|+.|.+-+|++...   -...+..+|+|+.||+++-+..
T Consensus        98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~  153 (233)
T KOG1644|consen   98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRK  153 (233)
T ss_pred             cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHH
Confidence            8886421 23467788999999999988632   2234677899999998876544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.19  E-value=3.4e-06  Score=61.56  Aligned_cols=107  Identities=20%  Similarity=0.247  Sum_probs=72.2

Q ss_pred             CCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCcc-CccCCC
Q 048125           69 HKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNI-PSGLRN  147 (258)
Q Consensus        69 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~-~~~~~~  147 (258)
                      .+...+++++|.+..         ...+.+++.|.+|.++.|+++ .+.+.+..+.+.+..|.+.+|.+.+.. -.-+..
T Consensus        42 d~~d~iDLtdNdl~~---------l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~  111 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRK---------LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLAS  111 (233)
T ss_pred             cccceecccccchhh---------cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhcc
Confidence            355666777776643         235667778888888888887 555556666667888888888765321 233456


Q ss_pred             CCcccEEEeeCCccccc---cCCcccCccCCcEEEecCCcc
Q 048125          148 LVNLELLDLSGNQFTSR---IPGSIGDLQKLQMLGLNGNKF  185 (258)
Q Consensus       148 ~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~  185 (258)
                      +++|++|.+-+|++...   -...+..+++|+.|++++-..
T Consensus       112 ~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen  112 CPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             CCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            77888888888887632   234556788888888876543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.15  E-value=2e-06  Score=47.37  Aligned_cols=36  Identities=33%  Similarity=0.507  Sum_probs=20.9

Q ss_pred             CcceEecccccccccCCcccccCcCCcEEeccCCccc
Q 048125          198 LLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLS  234 (258)
Q Consensus       198 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~  234 (258)
                      +|++|++++|+++ .+|..++.+++|+.|++++|+|+
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4566666666666 34444566666666666666665

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.13  E-value=8.2e-08  Score=65.55  Aligned_cols=108  Identities=25%  Similarity=0.348  Sum_probs=75.2

Q ss_pred             cceEEecccccCCccCcc---CCCCCcccEEEeeCCccccccCCcc-cCccCCcEEEecCCccccccCCCCCCCCCcceE
Q 048125          127 LGILSVAENQLFGNIPSG---LRNLVNLELLDLSGNQFTSRIPGSI-GDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTL  202 (258)
Q Consensus       127 l~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  202 (258)
                      +..+++++|.+. .+++.   +.....|+..++++|.+. ..|..| ...+.++.+++.+|.+. .+|+.+..++.|+.+
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL  105 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence            445666677654 22222   234456777788888887 444444 34567888888888887 677778888888888


Q ss_pred             ecccccccccCCcccccCcCCcEEeccCCcccccccc
Q 048125          203 NFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPS  239 (258)
Q Consensus       203 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~  239 (258)
                      +++.|.+. ..|+.+..+.++..|+..+|.+. .++.
T Consensus       106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~  140 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDV  140 (177)
T ss_pred             ccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcH
Confidence            88888887 67777777888888888888776 4443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.09  E-value=1.1e-07  Score=65.00  Aligned_cols=84  Identities=27%  Similarity=0.334  Sum_probs=42.4

Q ss_pred             CCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEE
Q 048125          100 SRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLG  179 (258)
Q Consensus       100 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  179 (258)
                      ..|+..++++|.+. .+|+.+....+..+.++++.|++. .+|+.+..++.|+.++++.|++. ..|..+..+.++..|+
T Consensus        53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD  129 (177)
T ss_pred             ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence            33444455555444 333333333334555555555554 34444555555666666665555 3444444455555555


Q ss_pred             ecCCccc
Q 048125          180 LNGNKFL  186 (258)
Q Consensus       180 l~~~~~~  186 (258)
                      ..++...
T Consensus       130 s~~na~~  136 (177)
T KOG4579|consen  130 SPENARA  136 (177)
T ss_pred             CCCCccc
Confidence            5555543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.04  E-value=4.7e-06  Score=45.85  Aligned_cols=36  Identities=42%  Similarity=0.622  Sum_probs=31.1

Q ss_pred             cCCcEEeccCCccccccccccccccCcceeEecCCCCC
Q 048125          221 QNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       221 ~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~  258 (258)
                      ++|++|++++|+|+ .++..+..++.| ++|++++|++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L-~~L~l~~N~i   36 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNL-ETLNLSNNPI   36 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTS-SEEEETSSCC
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCC-CEEEecCCCC
Confidence            47899999999999 678789999999 9999999986

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.01  E-value=9.5e-07  Score=77.76  Aligned_cols=135  Identities=21%  Similarity=0.267  Sum_probs=87.9

Q ss_pred             CCCcEEEeecccc-cccccccccccccccceEEecccccC-CccCccCCCCCcccEEEeeCCccccccCCcccCccCCcE
Q 048125          100 SRLELLQISDNNF-GGMLPEAVGNFSTRLGILSVAENQLF-GNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQM  177 (258)
Q Consensus       100 ~~L~~L~l~~~~~-~~~~~~~~~~~~~~l~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  177 (258)
                      .+|++|++++... ....+..++...|+|+.|.+.+-... +.......++++|..||+++.++...  ...+.+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            4688888887532 33445566777788888888775442 22334455778888888888888733  45677888888


Q ss_pred             EEecCCcccc-ccCCCCCCCCCcceEecccccccccC------CcccccCcCCcEEeccCCccccc
Q 048125          178 LGLNGNKFLG-EIPSSIGNLTLLMTLNFAENMLEGSI------PSSLGKCQNLIVLDLYNNNLSGT  236 (258)
Q Consensus       178 L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~------~~~~~~~~~L~~L~l~~~~l~~~  236 (258)
                      |.+.+-.+.. ..-..+.++++|+.||++........      .+.-..+|+|+.||.+++.+...
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            8777655542 11123566888888888876643211      11223378888888888888743

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.90  E-value=8.8e-05  Score=51.41  Aligned_cols=100  Identities=16%  Similarity=0.225  Sum_probs=40.1

Q ss_pred             ccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecc
Q 048125          126 RLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFA  205 (258)
Q Consensus       126 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  205 (258)
                      +++.+.+.. .+.......|..+++++++.+..+ +......+|.++++++.+.+.+ .+.......|..+++++.+++.
T Consensus        13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~   89 (129)
T PF13306_consen   13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP   89 (129)
T ss_dssp             T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred             CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence            455555543 222222334445555666665553 4334445555555566666644 3332333455556666666665


Q ss_pred             cccccccCCcccccCcCCcEEeccC
Q 048125          206 ENMLEGSIPSSLGKCQNLIVLDLYN  230 (258)
Q Consensus       206 ~n~~~~~~~~~~~~~~~L~~L~l~~  230 (258)
                      .+ +.......+..+ .++.+.+..
T Consensus        90 ~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   90 SN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TT--BEEHTTTTTT--T--EEE-TT
T ss_pred             cc-ccEEchhhhcCC-CceEEEECC
Confidence            44 332333444444 666665554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.89  E-value=7.2e-05  Score=61.47  Aligned_cols=137  Identities=20%  Similarity=0.212  Sum_probs=72.6

Q ss_pred             cccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccC
Q 048125           66 ENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGL  145 (258)
Q Consensus        66 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~  145 (258)
                      ..+.+++.|++++|.++..        +   .-.++|+.|.+++|.-...+|..+   +.+|+.|.+++|.....+|   
T Consensus        49 ~~~~~l~~L~Is~c~L~sL--------P---~LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP---  111 (426)
T PRK15386         49 EEARASGRLYIKDCDIESL--------P---VLPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLP---  111 (426)
T ss_pred             HHhcCCCEEEeCCCCCccc--------C---CCCCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccccc---
Confidence            4467889999998877643        2   112368899998864433555433   3578899988873221233   


Q ss_pred             CCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccc--cccCCCCCCCCCcceEecccccccccCCcccccCcCC
Q 048125          146 RNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFL--GEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNL  223 (258)
Q Consensus       146 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L  223 (258)
                         +.|++|++..+.... ...   -.++|+.|.+.++...  ...+..  -.++|++|++++|... ..|..+.  .+|
T Consensus       112 ---~sLe~L~L~~n~~~~-L~~---LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SL  179 (426)
T PRK15386        112 ---ESVRSLEIKGSATDS-IKN---VPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESL  179 (426)
T ss_pred             ---cccceEEeCCCCCcc-ccc---CcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccC
Confidence               356667766543321 111   0124555555432211  011111  1256777777776654 2333222  466


Q ss_pred             cEEeccCC
Q 048125          224 IVLDLYNN  231 (258)
Q Consensus       224 ~~L~l~~~  231 (258)
                      +.|+++.+
T Consensus       180 k~L~ls~n  187 (426)
T PRK15386        180 QSITLHIE  187 (426)
T ss_pred             cEEEeccc
Confidence            66666654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.81  E-value=0.00016  Score=50.13  Aligned_cols=121  Identities=18%  Similarity=0.207  Sum_probs=46.1

Q ss_pred             cccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCC
Q 048125           96 LVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKL  175 (258)
Q Consensus        96 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  175 (258)
                      +..+.+|+.+.+.. .+. .+....+..+..++.+.+..+ +.......|..++.++++.+.. .+.......|..++++
T Consensus         8 F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            44455555555543 222 233333333345666665543 3323334455555666666654 3332444566666666


Q ss_pred             cEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCC
Q 048125          176 QMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNL  223 (258)
Q Consensus       176 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L  223 (258)
                      +.+.+..+ +...-...|..+ +++.+.+.+ .+.......+.+|++|
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            66666543 443444456665 666666655 2222344445555444

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.76  E-value=8.5e-07  Score=71.33  Aligned_cols=47  Identities=19%  Similarity=0.037  Sum_probs=31.3

Q ss_pred             CCCcchhccCCCCceEEecCC-cccccccccc-cCCCCCcEEEeecccC
Q 048125           12 SLPSDLGFTLPNLEGLNLAGN-QFTGPIPVSI-SNASNLRELMIGKNGF   58 (258)
Q Consensus        12 ~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~-~~~~~L~~L~l~~~~~   58 (258)
                      ..-..+...|++|+++++..| .++....+.+ .++++|++|++++|.-
T Consensus       180 ~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~q  228 (483)
T KOG4341|consen  180 SSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQ  228 (483)
T ss_pred             HHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCch
Confidence            333345556888888888886 5554443333 3688888888888764

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.75  E-value=7.2e-07  Score=71.74  Aligned_cols=67  Identities=22%  Similarity=0.198  Sum_probs=48.8

Q ss_pred             CcchhccCCCCceEEecCC-ccccccccccc-CCCCCcEEEeecccCCC-CCCC--ccccCCcceEEecccc
Q 048125           14 PSDLGFTLPNLEGLNLAGN-QFTGPIPVSIS-NASNLRELMIGKNGFSG-KVPS--LENLHKLQRVIISQNH   80 (258)
Q Consensus        14 ~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~-~~~~L~~L~l~~~~~~~-~~~~--~~~l~~L~~L~l~~~~   80 (258)
                      .+.+..+||++++|++.+| ++++....+++ .|++|++|++..|.... ....  ..++++|+++++++|.
T Consensus       156 lrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~  227 (483)
T KOG4341|consen  156 LRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCP  227 (483)
T ss_pred             hhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCc
Confidence            3456667999999999999 56554444444 58999999999965432 2222  4688999999999874

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.75  E-value=0.00033  Score=57.70  Aligned_cols=53  Identities=13%  Similarity=0.261  Sum_probs=25.1

Q ss_pred             CCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEeccc
Q 048125           21 LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQN   79 (258)
Q Consensus        21 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~   79 (258)
                      |.++++|++.+|.++ .+| .+  -.+|++|.+++|.-....+. +  ..+|+.|.+.+|
T Consensus        51 ~~~l~~L~Is~c~L~-sLP-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         51 ARASGRLYIKDCDIE-SLP-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             hcCCCEEEeCCCCCc-ccC-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            456666666666554 233 11  12466666655443222221 1  135556655554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.71  E-value=1.9e-05  Score=69.71  Aligned_cols=90  Identities=27%  Similarity=0.409  Sum_probs=52.4

Q ss_pred             chhccCCCCceEEecCCcccc-cccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhh
Q 048125           16 DLGFTLPNLEGLNLAGNQFTG-PIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVN   94 (258)
Q Consensus        16 ~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~   94 (258)
                      .++.-+|.|++|.+++-.+.. .+..-..++++|..||++++++... ..++.+.+|+.|.+.+=.+...      ....
T Consensus       142 kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~------~~l~  214 (699)
T KOG3665|consen  142 KIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESY------QDLI  214 (699)
T ss_pred             HHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCch------hhHH
Confidence            355557777777776654432 2223334567777777777766543 2356666777776665555442      2233


Q ss_pred             ccccCCCCcEEEeecccc
Q 048125           95 SLVNASRLELLQISDNNF  112 (258)
Q Consensus        95 ~~~~~~~L~~L~l~~~~~  112 (258)
                      .+..+.+|++||+|....
T Consensus       215 ~LF~L~~L~vLDIS~~~~  232 (699)
T KOG3665|consen  215 DLFNLKKLRVLDISRDKN  232 (699)
T ss_pred             HHhcccCCCeeecccccc
Confidence            555677777777776543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.55  E-value=3.2e-06  Score=72.20  Aligned_cols=112  Identities=20%  Similarity=0.190  Sum_probs=53.4

Q ss_pred             cCCCCceEEecCC-ccccc-ccccccCCCCCcEEEeecc-cCCCCCC-----CccccCCcceEEecccc-ccCcCCCccc
Q 048125           20 TLPNLEGLNLAGN-QFTGP-IPVSISNASNLRELMIGKN-GFSGKVP-----SLENLHKLQRVIISQNH-LGNYGEKDNL   90 (258)
Q Consensus        20 ~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~~~-----~~~~l~~L~~L~l~~~~-~~~~~~~~~~   90 (258)
                      .+++|+.+.+..| .++.. .......++.|+.|+++++ .......     ....+.+|++++++++. +++.+     
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~-----  260 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG-----  260 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh-----
Confidence            3566666666655 33321 1223345666777776652 1111111     12344666666666665 33311     


Q ss_pred             hhhhccccCCCCcEEEeeccc-ccccccccccccccccceEEeccccc
Q 048125           91 EFVNSLVNASRLELLQISDNN-FGGMLPEAVGNFSTRLGILSVAENQL  137 (258)
Q Consensus        91 ~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~l~~L~l~~~~~  137 (258)
                       +......++.|+.|.+..+. +++.....+...++.|+.|+++.|..
T Consensus       261 -l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  261 -LSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             -HHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence             11111225666666655554 34333333333344566666665543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.18  E-value=0.00021  Score=54.38  Aligned_cols=100  Identities=31%  Similarity=0.370  Sum_probs=64.9

Q ss_pred             CcccEEEeeCCccccccCCcccCccCCcEEEecCC--ccccccCCCCCCCCCcceEecccccccccCCcc---cccCcCC
Q 048125          149 VNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGN--KFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSS---LGKCQNL  223 (258)
Q Consensus       149 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~~~~L  223 (258)
                      ..++.+.+.+..++.  -..|..+++|++|.+++|  .+...++-....+|+|+++++++|++..  +..   +..+.+|
T Consensus        43 ~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL  118 (260)
T KOG2739|consen   43 VELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENL  118 (260)
T ss_pred             cchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcch
Confidence            455566666655552  234566788999999998  5554444444566999999999998862  322   3456778


Q ss_pred             cEEeccCCcccccc---ccccccccCcceeEec
Q 048125          224 IVLDLYNNNLSGTI---PSEVIGLSSLSIYLDL  253 (258)
Q Consensus       224 ~~L~l~~~~l~~~~---~~~~~~~~~l~~~L~l  253 (258)
                      ..|++.+|..+..-   ...|..+++| .+||-
T Consensus       119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L-~~LD~  150 (260)
T KOG2739|consen  119 KSLDLFNCSVTNLDDYREKVFLLLPSL-KYLDG  150 (260)
T ss_pred             hhhhcccCCccccccHHHHHHHHhhhh-ccccc
Confidence            88888888776311   1345566677 66663

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.07  E-value=0.00024  Score=54.11  Aligned_cols=105  Identities=17%  Similarity=0.145  Sum_probs=52.5

Q ss_pred             CCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCC--CCC-ccccCCcceEEeccccccCcCCCccchhhhccc
Q 048125           21 LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGK--VPS-LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLV   97 (258)
Q Consensus        21 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   97 (258)
                      +.+|+.+++.++..+.  ...|..+++|+.|.++.|.....  ... ...+++|+++++++|++...      .....+.
T Consensus        42 ~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l------stl~pl~  113 (260)
T KOG2739|consen   42 FVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL------STLRPLK  113 (260)
T ss_pred             ccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccc------cccchhh
Confidence            5555666555555442  12344556666777766633221  111 33446777777777766542      2333445


Q ss_pred             cCCCCcEEEeecccccc--cccccccccccccceEEec
Q 048125           98 NASRLELLQISDNNFGG--MLPEAVGNFSTRLGILSVA  133 (258)
Q Consensus        98 ~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~l~~L~l~  133 (258)
                      .+.+|..|++..|..+.  ..-..++.+.++|++|+-.
T Consensus       114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             hhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence            55566666666664432  1112234444555555443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.89  E-value=4.9e-05  Score=64.94  Aligned_cols=115  Identities=18%  Similarity=0.094  Sum_probs=65.2

Q ss_pred             CCCCCcEEEeecccCCCC---CCCccccCCcceEEeccc-cccCcCCCccchhhhccccCCCCcEEEeeccc-ccccccc
Q 048125           44 NASNLRELMIGKNGFSGK---VPSLENLHKLQRVIISQN-HLGNYGEKDNLEFVNSLVNASRLELLQISDNN-FGGMLPE  118 (258)
Q Consensus        44 ~~~~L~~L~l~~~~~~~~---~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~  118 (258)
                      .++.|+.+.+..+.....   .......++|+.|.+.++ ........   ........+++|+.++++.+. +++....
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~~~~~L~~l~l~~~~~isd~~l~  262 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPL---LLLLLLSICRKLKSLDLSGCGLVTDIGLS  262 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchh---HhhhhhhhcCCcCccchhhhhccCchhHH
Confidence            367777777777644332   122566778888888763 11111110   111234456778888888776 5544444


Q ss_pred             cccccccccceEEecccc-cCCc-cCccCCCCCcccEEEeeCCcc
Q 048125          119 AVGNFSTRLGILSVAENQ-LFGN-IPSGLRNLVNLELLDLSGNQF  161 (258)
Q Consensus       119 ~~~~~~~~l~~L~l~~~~-~~~~-~~~~~~~~~~L~~L~l~~~~~  161 (258)
                      .+...++.++.|.+..|. +++. +......++.|++|+++++..
T Consensus       263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            444445678888766665 3322 223334566788888887744

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.65  E-value=4.8e-05  Score=58.52  Aligned_cols=82  Identities=20%  Similarity=0.154  Sum_probs=45.2

Q ss_pred             CCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCcccccc-CCcccCccCCcE
Q 048125           99 ASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRI-PGSIGDLQKLQM  177 (258)
Q Consensus        99 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~  177 (258)
                      +.+.++|+..+|.+. .+.  ++.-.+.++.|.++-|+++..  ..+..+++|++|++..|.|.+.. -.++.++++|+.
T Consensus        18 l~~vkKLNcwg~~L~-DIs--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLD-DIS--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCcc-HHH--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            445666666666655 221  222224666676666666422  22455667777777776665321 124456666777


Q ss_pred             EEecCCcc
Q 048125          178 LGLNGNKF  185 (258)
Q Consensus       178 L~l~~~~~  185 (258)
                      |+|..|.-
T Consensus        93 LWL~ENPC  100 (388)
T KOG2123|consen   93 LWLDENPC  100 (388)
T ss_pred             HhhccCCc
Confidence            76666543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.52  E-value=9.4e-05  Score=56.97  Aligned_cols=86  Identities=21%  Similarity=0.248  Sum_probs=55.5

Q ss_pred             CCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCC
Q 048125           21 LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNAS  100 (258)
Q Consensus        21 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  100 (258)
                      +.+++.|++-+|++.++  .-..+++.|+.|.|+-|++.... .+..+++|++|+|..|.+.++      .-..-+.++|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sl------dEL~YLknlp   88 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESL------DELEYLKNLP   88 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccH------HHHHHHhcCc
Confidence            45667777777776643  12246777777777777776432 356677777777777777654      2334556777


Q ss_pred             CCcEEEeeccccccc
Q 048125          101 RLELLQISDNNFGGM  115 (258)
Q Consensus       101 ~L~~L~l~~~~~~~~  115 (258)
                      +|+.|-+..|.-++.
T Consensus        89 sLr~LWL~ENPCc~~  103 (388)
T KOG2123|consen   89 SLRTLWLDENPCCGE  103 (388)
T ss_pred             hhhhHhhccCCcccc
Confidence            777777777765544

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.89  E-value=1.6e-05  Score=67.25  Aligned_cols=183  Identities=24%  Similarity=0.284  Sum_probs=80.7

Q ss_pred             cceEEeccccccCcCCCccchhhhccccCCCCcEEEeeccccccccccc----ccccccccceEEecccccCCc----cC
Q 048125           71 LQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEA----VGNFSTRLGILSVAENQLFGN----IP  142 (258)
Q Consensus        71 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~~l~~L~l~~~~~~~~----~~  142 (258)
                      +..+.+.+|.+...+..   .....+.-.+.|..|++++|.++......    +......+++|++..|.....    +.
T Consensus        89 l~~L~L~~~~l~~~~~~---~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~  165 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAE---ELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLA  165 (478)
T ss_pred             HHHhhhhhCccccchHH---HHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHH
Confidence            45555555555443322   33334445555555666665554221111    111112344455544444322    22


Q ss_pred             ccCCCCCcccEEEeeCCcccc----ccCCc----ccCccCCcEEEecCCcccc----ccCCCCCCCCC-cceEecccccc
Q 048125          143 SGLRNLVNLELLDLSGNQFTS----RIPGS----IGDLQKLQMLGLNGNKFLG----EIPSSIGNLTL-LMTLNFAENML  209 (258)
Q Consensus       143 ~~~~~~~~L~~L~l~~~~~~~----~~~~~----~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~-L~~L~l~~n~~  209 (258)
                      ..+...+.++++++..|.+..    ..+..    +....++++|.+..|.++.    .+...+...+. +..+++..|.+
T Consensus       166 ~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l  245 (478)
T KOG4308|consen  166 AVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKL  245 (478)
T ss_pred             HHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCc
Confidence            333334555555555554421    11111    2234556666666665442    11122333333 44466666655


Q ss_pred             ccc----CCcccccC-cCCcEEeccCCccccc----cccccccccCcceeEecCCCC
Q 048125          210 EGS----IPSSLGKC-QNLIVLDLYNNNLSGT----IPSEVIGLSSLSIYLDLSQNQ  257 (258)
Q Consensus       210 ~~~----~~~~~~~~-~~L~~L~l~~~~l~~~----~~~~~~~~~~l~~~L~l~~n~  257 (258)
                      .+.    ....+... ..++.++++.|+|.+.    +...+..++.+ .++.++.|+
T Consensus       246 ~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l-~~l~l~~n~  301 (478)
T KOG4308|consen  246 GDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQL-EELSLSNNP  301 (478)
T ss_pred             chHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHH-HHhhcccCc
Confidence            432    11222222 4556666666666532    23344455555 666666554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.82  E-value=0.0054  Score=27.97  Aligned_cols=18  Identities=56%  Similarity=0.743  Sum_probs=10.1

Q ss_pred             CcEEeccCCcccccccccc
Q 048125          223 LIVLDLYNNNLSGTIPSEV  241 (258)
Q Consensus       223 L~~L~l~~~~l~~~~~~~~  241 (258)
                      |++|++++|+++ .+|..|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            456666666665 455444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.78  E-value=0.0029  Score=46.62  Aligned_cols=81  Identities=22%  Similarity=0.250  Sum_probs=52.5

Q ss_pred             cccEEEeeCCccccccCCcccCccCCcEEEecCCcccc--ccCCCCCCCCCcceEeccccc-ccccCCcccccCcCCcEE
Q 048125          150 NLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLG--EIPSSIGNLTLLMTLNFAENM-LEGSIPSSLGKCQNLIVL  226 (258)
Q Consensus       150 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L  226 (258)
                      .++.++-+++.|.....+-+..++.++.|.+.+|..-+  .+...-.-.++|+.|++++|. |++.....+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            56777777777765555666777777777777765432  111111245777888888774 666666777777777777


Q ss_pred             eccC
Q 048125          227 DLYN  230 (258)
Q Consensus       227 ~l~~  230 (258)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            7655

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.66  E-value=0.0047  Score=45.52  Aligned_cols=84  Identities=17%  Similarity=0.191  Sum_probs=46.9

Q ss_pred             ccceEEecccccCCccCccCCCCCcccEEEeeCCccccc-cCCcc-cCccCCcEEEecCCc-cccccCCCCCCCCCcceE
Q 048125          126 RLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSR-IPGSI-GDLQKLQMLGLNGNK-FLGEIPSSIGNLTLLMTL  202 (258)
Q Consensus       126 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~-~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L  202 (258)
                      .+++++-+++.+..+.-+.+..+++++.|.+.+|.-.+. .-+.+ ...++|+.|++++|. |++.--..+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            466666666665544445566677777777776633211 11111 134677777777763 443323345566777777


Q ss_pred             ecccccc
Q 048125          203 NFAENML  209 (258)
Q Consensus       203 ~l~~n~~  209 (258)
                      .+.+-..
T Consensus       182 ~l~~l~~  188 (221)
T KOG3864|consen  182 HLYDLPY  188 (221)
T ss_pred             HhcCchh
Confidence            6666543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.41  E-value=0.028  Score=23.76  Aligned_cols=13  Identities=62%  Similarity=0.759  Sum_probs=5.4

Q ss_pred             CCcEEeccCCccc
Q 048125          222 NLIVLDLYNNNLS  234 (258)
Q Consensus       222 ~L~~L~l~~~~l~  234 (258)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4555555555544

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.31  E-value=0.0001  Score=62.51  Aligned_cols=38  Identities=29%  Similarity=0.354  Sum_probs=20.6

Q ss_pred             CCcceEecccccccccCCc----ccccCcCCcEEeccCCccc
Q 048125          197 TLLMTLNFAENMLEGSIPS----SLGKCQNLIVLDLYNNNLS  234 (258)
Q Consensus       197 ~~L~~L~l~~n~~~~~~~~----~~~~~~~L~~L~l~~~~l~  234 (258)
                      +.++.+++..|.+.+....    .+..+++++.+.+.+|.+.
T Consensus       262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            4556666666666543322    2333556666666666655

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.02  E-value=0.0024  Score=48.21  Aligned_cols=86  Identities=17%  Similarity=0.163  Sum_probs=57.3

Q ss_pred             CCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcE
Q 048125          146 RNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIV  225 (258)
Q Consensus       146 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  225 (258)
                      ....+.+.||++.|.+. ..-..|+-++.++.++++.+.+. ..|.-++....+..++...|... ..|.+.+..+.++.
T Consensus        39 ~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~  115 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK  115 (326)
T ss_pred             hccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence            34456677777777665 34445666677777777777766 66666666666666676666665 56667777777777


Q ss_pred             EeccCCccc
Q 048125          226 LDLYNNNLS  234 (258)
Q Consensus       226 L~l~~~~l~  234 (258)
                      ++..++.+.
T Consensus       116 ~e~k~~~~~  124 (326)
T KOG0473|consen  116 NEQKKTEFF  124 (326)
T ss_pred             hhhccCcch
Confidence            777776654

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=91.57  E-value=0.042  Score=25.49  Aligned_cols=14  Identities=50%  Similarity=0.674  Sum_probs=5.7

Q ss_pred             cCCcEEeccCCccc
Q 048125          221 QNLIVLDLYNNNLS  234 (258)
Q Consensus       221 ~~L~~L~l~~~~l~  234 (258)
                      ++|+.|++++|+|+
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            34445555555444

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.33  E-value=0.17  Score=23.89  Aligned_cols=18  Identities=56%  Similarity=0.757  Sum_probs=10.3

Q ss_pred             cCCcEEeccCCcccccccc
Q 048125          221 QNLIVLDLYNNNLSGTIPS  239 (258)
Q Consensus       221 ~~L~~L~l~~~~l~~~~~~  239 (258)
                      ++|+.|++++|+|+ .+|.
T Consensus         2 ~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCEEECCCCcCC-cCCH
Confidence            45566666666666 4443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.33  E-value=0.17  Score=23.89  Aligned_cols=18  Identities=56%  Similarity=0.757  Sum_probs=10.3

Q ss_pred             cCCcEEeccCCcccccccc
Q 048125          221 QNLIVLDLYNNNLSGTIPS  239 (258)
Q Consensus       221 ~~L~~L~l~~~~l~~~~~~  239 (258)
                      ++|+.|++++|+|+ .+|.
T Consensus         2 ~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCEEECCCCcCC-cCCH
Confidence            45566666666666 4443

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=84.75  E-value=0.75  Score=22.18  Aligned_cols=13  Identities=62%  Similarity=0.677  Sum_probs=8.1

Q ss_pred             cCcceeEecCCCCC
Q 048125          245 SSLSIYLDLSQNQL  258 (258)
Q Consensus       245 ~~l~~~L~l~~n~~  258 (258)
                      ++| ++|||++|.|
T Consensus         2 ~~L-~~LdL~~N~i   14 (28)
T smart00368        2 PSL-RELDLSNNKL   14 (28)
T ss_pred             Ccc-CEEECCCCCC
Confidence            345 6777777654

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=84.01  E-value=0.035  Score=42.17  Aligned_cols=83  Identities=20%  Similarity=0.199  Sum_probs=60.0

Q ss_pred             cccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEec
Q 048125          125 TRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNF  204 (258)
Q Consensus       125 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  204 (258)
                      ...+.|+++.+... .+-..|..++.+..++++.|.+. ..|..+.....+..++...|... ..|..++..++++.++.
T Consensus        42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence            36777777777554 33444556667777888888776 67777777777777777777765 67778888888888888


Q ss_pred             cccccc
Q 048125          205 AENMLE  210 (258)
Q Consensus       205 ~~n~~~  210 (258)
                      -++.+.
T Consensus       119 k~~~~~  124 (326)
T KOG0473|consen  119 KKTEFF  124 (326)
T ss_pred             ccCcch
Confidence            888765

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=80.54  E-value=0.84  Score=39.22  Aligned_cols=92  Identities=14%  Similarity=0.041  Sum_probs=52.6

Q ss_pred             cchhccCCCCceEEecCCcccccc--cccccCCCCCcEEEeecccCCC-CCCC--ccccCCcceEEeccccccCcCCCcc
Q 048125           15 SDLGFTLPNLEGLNLAGNQFTGPI--PVSISNASNLRELMIGKNGFSG-KVPS--LENLHKLQRVIISQNHLGNYGEKDN   89 (258)
Q Consensus        15 ~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~-~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~   89 (258)
                      ..+..+.+.+..+++++|.+-...  ..--...|+|+.|+|++|.... ...+  .-+...|++|.+.+|.+......-.
T Consensus       211 ~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s  290 (585)
T KOG3763|consen  211 KHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRS  290 (585)
T ss_pred             HHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhH
Confidence            345567888888888888665321  1112356889999999883321 1122  2345678889998888765321111


Q ss_pred             chhhhccccCCCCcEEE
Q 048125           90 LEFVNSLVNASRLELLQ  106 (258)
Q Consensus        90 ~~~~~~~~~~~~L~~L~  106 (258)
                      .-+...-..+|+|..||
T Consensus       291 ~yv~~i~~~FPKL~~LD  307 (585)
T KOG3763|consen  291 EYVSAIRELFPKLLRLD  307 (585)
T ss_pred             HHHHHHHHhcchheeec
Confidence            01111122567777666

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	258
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-21
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-21
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		9e-08
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-07

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 74.3 bits (181), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 125/300 (41%), Gaps = 57/300 (19%)
Query: 6   FNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS- 64
           FN L G++PS LG +L  L  L L  N   G IP  +     L  L++  N  +G++PS 
Sbjct: 427 FNYLSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 485
Query: 65  LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFS 124
           L N   L  + +S N L   GE    +++  L N   L +L++S+N+F G +P  +G+  
Sbjct: 486 LSNCTNLNWISLSNNRL--TGEIP--KWIGRLEN---LAILKLSNNSFSGNIPAELGDCR 538
Query: 125 TRLGILSVAENQLFGNIPS----------------------------------------- 143
           + L  L +  N   G IP+                                         
Sbjct: 539 S-LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 597
Query: 144 GXXXXXXXXXXXXXXXQFTSRIPG-----SIGDLQKLQMLGLNGNKFLGEIPSSIGNLTL 198
           G                 TSR+ G     +  +   +  L ++ N   G IP  IG++  
Sbjct: 598 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 657
Query: 199 LMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
           L  LN   N + GSIP  +G  + L +LDL +N L G IP  +  L+ L+  +DLS N L
Sbjct: 658 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT-EIDLSNNNL 716

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 74.3 bits (181), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 125/300 (41%), Gaps = 57/300 (19%)
Query: 6   FNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS- 64
           FN L G++PS LG +L  L  L L  N   G IP  +     L  L++  N  +G++PS 
Sbjct: 424 FNYLSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 482
Query: 65  LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFS 124
           L N   L  + +S N L   GE    +++  L N   L +L++S+N+F G +P  +G+  
Sbjct: 483 LSNCTNLNWISLSNNRL--TGEIP--KWIGRLEN---LAILKLSNNSFSGNIPAELGDCR 535
Query: 125 TRLGILSVAENQLFGNIPS----------------------------------------- 143
           + L  L +  N   G IP+                                         
Sbjct: 536 S-LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 594
Query: 144 GXXXXXXXXXXXXXXXQFTSRIPG-----SIGDLQKLQMLGLNGNKFLGEIPSSIGNLTL 198
           G                 TSR+ G     +  +   +  L ++ N   G IP  IG++  
Sbjct: 595 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 654
Query: 199 LMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
           L  LN   N + GSIP  +G  + L +LDL +N L G IP  +  L+ L+  +DLS N L
Sbjct: 655 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT-EIDLSNNNL 713

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 21/161 (13%)
Query: 2   FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNL-RELMIGKNGFSG 60
            DF +N L G+LP  +  +LPNL G+   GN+ +G IP S  + S L   + I +N  +G
Sbjct: 130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG 188
Query: 61  KV-PSLENLHKLQRVIISQNHLGN-----YGEKDNLEFVNSLVNASRLEL---------- 104
           K+ P+  NL+ L  V +S+N L       +G   N + ++   N+   +L          
Sbjct: 189 KIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLN 247
Query: 105 -LQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSG 144
            L + +N   G LP+ +      L  L+V+ N L G IP G
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLK-FLHSLNVSFNNLCGEIPQG 287

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 48/94 (51%)
Query: 165 IPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLI 224
           IP +I  L +L  L +      G IP  +  +  L+TL+F+ N L G++P S+    NL+
Sbjct: 93  IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152
Query: 225 VLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
            +    N +SG IP      S L   + +S+N+L
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	258
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-59
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-55
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-51
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-51
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-50
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-49
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-48
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-47
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-42
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-37
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-52
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-51
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-46
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-43
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-42
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-34
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-33
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-31
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-30
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-30
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-32
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-28
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-31
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-31
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-30
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-29
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-31
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-28
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-26
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-30
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-27
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-23
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-19
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-11
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-11
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-10
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-09
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	6e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	9e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	7e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  199 bits (509), Expect = 2e-59
 Identities = 91/261 (34%), Positives = 120/261 (45%), Gaps = 12/261 (4%)

Query: 2   FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGK 61
                N+  G +P  L      L GL+L+GN F G +P    + S L  L +  N FSG+
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333

Query: 62  VP--SLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNAS-RLELLQISDNNFGGMLPE 118
           +P  +L  +  L+ + +S N         + E   SL N S  L  L +S NNF G +  
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEF-------SGELPESLTNLSASLLTLDLSSNNFSGPILP 386

Query: 119 AVGNFS-TRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQM 177
            +       L  L +  N   G IP  L N   L  L LS N  +  IP S+G L KL+ 
Sbjct: 387 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 446

Query: 178 LGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTI 237
           L L  N   GEIP  +  +  L TL    N L G IPS L  C NL  + L NN L+G I
Sbjct: 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506

Query: 238 PSEVIGLSSLSIYLDLSQNQL 258
           P  +  L +L+I L LS N  
Sbjct: 507 PKWIGRLENLAI-LKLSNNSF 526

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  188 bits (480), Expect = 2e-55
 Identities = 81/259 (31%), Positives = 121/259 (46%), Gaps = 12/259 (4%)

Query: 2   FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNAS-NLRELMIGKNGFSG 60
                N   G LP D    +  L+ L+L+ N+F+G +P S++N S +L  L +  N FSG
Sbjct: 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 382

Query: 61  KVPS---LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLP 117
            +         + LQ + +  N           +   +L N S L  L +S N   G +P
Sbjct: 383 PILPNLCQNPKNTLQELYLQNNGF-------TGKIPPTLSNCSELVSLHLSFNYLSGTIP 435

Query: 118 EAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQM 177
            ++G+ S +L  L +  N L G IP  L  +  LE L L  N  T  IP  + +   L  
Sbjct: 436 SSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 494

Query: 178 LGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTI 237
           + L+ N+  GEIP  IG L  L  L  + N   G+IP+ LG C++LI LDL  N  +GTI
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554

Query: 238 PSEVIGLSSLSIYLDLSQN 256
           P+ +   S       ++  
Sbjct: 555 PAAMFKQSGKIAANFIAGK 573

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  177 bits (452), Expect = 2e-51
 Identities = 81/262 (30%), Positives = 118/262 (45%), Gaps = 17/262 (6%)

Query: 2   FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSI---SNASNLRELMIGKNGF 58
            +   N L        G  L +LE L+L+ N  +G   V          L+ L I  N  
Sbjct: 131 LNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI 190

Query: 59  SGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPE 118
           SG V  +     L+ + +S N+            +  L + S L+ L IS N   G    
Sbjct: 191 SGDVD-VSRCVNLEFLDVSSNNF--STG------IPFLGDCSALQHLDISGNKLSGDFSR 241

Query: 119 AVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSI-GDLQKLQM 177
           A+    T L +L+++ NQ  G IP     L +L+ L L+ N+FT  IP  + G    L  
Sbjct: 242 AISTC-TELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTG 298

Query: 178 LGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIP-SSLGKCQNLIVLDLYNNNLSGT 236
           L L+GN F G +P   G+ +LL +L  + N   G +P  +L K + L VLDL  N  SG 
Sbjct: 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358

Query: 237 IPSEVIGLSSLSIYLDLSQNQL 258
           +P  +  LS+  + LDLS N  
Sbjct: 359 LPESLTNLSASLLTLDLSSNNF 380

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  177 bits (451), Expect = 3e-51
 Identities = 71/280 (25%), Positives = 114/280 (40%), Gaps = 31/280 (11%)

Query: 1   DFDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSG 60
           D     N L+G +P +L   +  LE L L  N  TG IP  +SN +NL  + +  N  +G
Sbjct: 446 DLKLWLNMLEGEIPQELM-YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 504

Query: 61  KVP-SLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEA 119
           ++P  +  L  L  + +S N     G          L +   L  L ++ N F G +P A
Sbjct: 505 EIPKWIGRLENLAILKLSNNSF--SGN-----IPAELGDCRSLIWLDLNTNLFNGTIPAA 557

Query: 120 VGNFSTRLG---------------------ILSVAENQLFGNIPSGLRNLVNLELLDLSG 158
           +   S ++                        +    +  G     L  L      +++ 
Sbjct: 558 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617

Query: 159 NQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLG 218
             +      +  +   +  L ++ N   G IP  IG++  L  LN   N + GSIP  +G
Sbjct: 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG 677

Query: 219 KCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
             + L +LDL +N L G IP  +  L+ L+  +DLS N L
Sbjct: 678 DLRGLNILDLSSNKLDGRIPQAMSALTMLT-EIDLSNNNL 716

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  173 bits (442), Expect = 6e-50
 Identities = 74/262 (28%), Positives = 121/262 (46%), Gaps = 19/262 (7%)

Query: 2   FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGK 61
                N++ G +         NLE L+++ N F+  IP  + + S L+ L I  N  SG 
Sbjct: 183 LAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGD 238

Query: 62  VP-SLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAV 120
              ++    +L+ + IS N          L           L+ L +++N F G +P+ +
Sbjct: 239 FSRAISTCTELKLLNISSNQFVGPIPPLPL---------KSLQYLSLAENKFTGEIPDFL 289

Query: 121 GNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIP-GSIGDLQKLQMLG 179
                 L  L ++ N  +G +P    +   LE L LS N F+  +P  ++  ++ L++L 
Sbjct: 290 SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD 349

Query: 180 LNGNKFLGEIPSSIGNLTL-LMTLNFAENMLEGSIPSSLGKCQ--NLIVLDLYNNNLSGT 236
           L+ N+F GE+P S+ NL+  L+TL+ + N   G I  +L +     L  L L NN  +G 
Sbjct: 350 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409

Query: 237 IPSEVIGLSSLSIYLDLSQNQL 258
           IP  +   S L   L LS N L
Sbjct: 410 IPPTLSNCSELV-SLHLSFNYL 430

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  172 bits (439), Expect = 1e-49
 Identities = 79/262 (30%), Positives = 127/262 (48%), Gaps = 18/262 (6%)

Query: 2   FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISN--ASNLRELMIGKNGFS 59
            D  FN+  G LP  L     +L  L+L+ N F+GPI  ++     + L+EL +  NGF+
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407

Query: 60  GKVP-SLENLHKLQRVIISQNHL-GNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLP 117
           GK+P +L N  +L  + +S N+L G           +SL + S+L  L++  N   G +P
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSG--------TIPSSLGSLSKLRDLKLWLNMLEGEIP 459

Query: 118 EAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQM 177
           + +      L  L +  N L G IPSGL N  NL  + LS N+ T  IP  IG L+ L +
Sbjct: 460 QELMY-VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518

Query: 178 LGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTI 237
           L L+ N F G IP+ +G+   L+ L+   N+  G+IP+++ K        +  N ++G  
Sbjct: 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS----GKIAANFIAGKR 574

Query: 238 PSEVIGLSSLS-IYLDLSQNQL 258
              +         +   +  + 
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEF 596

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  169 bits (431), Expect = 1e-48
 Identities = 76/261 (29%), Positives = 118/261 (45%), Gaps = 18/261 (6%)

Query: 3   DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKV 62
             P N    ++ S L  +L  LE L L+ +   G +      +++L  L + +N  SG V
Sbjct: 59  SKPLNVGFSAVSSSLL-SLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPV 116

Query: 63  P---SLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEA 119
               SL +   L+ + +S N L   G+      V+  +  + LE+L +S N+  G     
Sbjct: 117 TTLTSLGSCSGLKFLNVSSNTLDFPGK------VSGGLKLNSLEVLDLSANSISGANVVG 170

Query: 120 VGNFS--TRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQM 177
                    L  L+++ N++ G++       VNLE LD+S N F++ IP  +GD   LQ 
Sbjct: 171 WVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIP-FLGDCSALQH 227

Query: 178 LGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTI 237
           L ++GNK  G+   +I   T L  LN + N   G IP      ++L  L L  N  +G I
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEI 285

Query: 238 PSEVIGLSSLSIYLDLSQNQL 258
           P  + G       LDLS N  
Sbjct: 286 PDFLSGACDTLTGLDLSGNHF 306

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  166 bits (423), Expect = 2e-47
 Identities = 70/254 (27%), Positives = 106/254 (41%), Gaps = 18/254 (7%)

Query: 2   FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGK 61
               FN L G +PS L     NL  ++L+ N+ TG IP  I    NL  L +  N FSG 
Sbjct: 471 LILDFNDLTGEIPSGLS-NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529

Query: 62  VP-SLENLHKLQRVIISQNHL-----GNYGEKDNLEFVNSLVNASRLEL----------L 105
           +P  L +   L  + ++ N           ++      N +     + +           
Sbjct: 530 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 589

Query: 106 QISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRI 165
             +   F G+  E +   ST     ++      G+      N  ++  LD+S N  +  I
Sbjct: 590 AGNLLEFQGIRSEQLNRLST-RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648

Query: 166 PGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIV 225
           P  IG +  L +L L  N   G IP  +G+L  L  L+ + N L+G IP ++     L  
Sbjct: 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708

Query: 226 LDLYNNNLSGTIPS 239
           +DL NNNLSG IP 
Sbjct: 709 IDLSNNNLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  153 bits (389), Expect = 1e-42
 Identities = 55/239 (23%), Positives = 100/239 (41%), Gaps = 16/239 (6%)

Query: 23  NLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLG 82
           +L    L        +  S+ + + L  L +  +  +G V   +    L  + +S+N L 
Sbjct: 56  DLSSKPLNV--GFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLS 113

Query: 83  NYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIP 142
                  +  + SL + S L+ L +S N        + G     L +L ++ N + G   
Sbjct: 114 -----GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV 168

Query: 143 SGLR---NLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLL 199
            G         L+ L +SGN+ +  +   +     L+ L ++ N F   IP  +G+ + L
Sbjct: 169 VGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSAL 225

Query: 200 MTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
             L+ + N L G    ++  C  L +L++ +N   G IP     L SL  YL L++N+ 
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQ-YLSLAENKF 281

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  138 bits (350), Expect = 2e-37
 Identities = 62/231 (26%), Positives = 100/231 (43%), Gaps = 28/231 (12%)

Query: 7   NQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-- 64
           N+L G +P  +G  L NL  L L+ N F+G IP  + +  +L  L +  N F+G +P+  
Sbjct: 500 NRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558

Query: 65  -------------------LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELL 105
                              ++N    +    + N L   G          L   S     
Sbjct: 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI-----RSEQLNRLSTRNPC 613

Query: 106 QISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRI 165
            I+   +GG       N  + +  L ++ N L G IP  + ++  L +L+L  N  +  I
Sbjct: 614 NITSRVYGGHTSPTFDNNGS-MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672

Query: 166 PGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSS 216
           P  +GDL+ L +L L+ NK  G IP ++  LT+L  ++ + N L G IP  
Sbjct: 673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  100 bits (251), Expect = 3e-24
 Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 6/139 (4%)

Query: 125 TRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNK 184
           T + + S   N  F  + S L +L  LE L LS +     +         L  L L+ N 
Sbjct: 53  TSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNS 111

Query: 185 FLGEIPS--SIGNLTLLMTLNFAENMLEGSIPSSLG-KCQNLIVLDLYNNNLSGTIPSEV 241
             G + +  S+G+ + L  LN + N L+     S G K  +L VLDL  N++SG      
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW 171

Query: 242 IGLSSLS--IYLDLSQNQL 258
           +         +L +S N++
Sbjct: 172 VLSDGCGELKHLAISGNKI 190

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 79.6 bits (197), Expect = 4e-17
 Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 5/116 (4%)

Query: 146 RNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFA 205
             + +++L     N   S +  S+  L  L+ L L+ +   G +         L +L+ +
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLS 108

Query: 206 ENMLEGSIPS--SLGKCQNLIVLDLYNNNLSGTIP-SEVIGLSSLSIYLDLSQNQL 258
            N L G + +  SLG C  L  L++ +N L      S  + L+SL   LDLS N +
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE-VLDLSANSI 163

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  171 bits (437), Expect = 2e-52
 Identities = 68/243 (27%), Positives = 102/243 (41%), Gaps = 16/243 (6%)

Query: 3   DFPFNQLQGS--LPSDLGFTLPNLEGLNLAG-NQFTGPIPVSISNASNLRELMIGKNGFS 59
           D     L     +PS L   LP L  L + G N   GPIP +I+  + L  L I     S
Sbjct: 56  DLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114

Query: 60  GKVP-SLENLHKLQRVIISQNHL-GNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLP 117
           G +P  L  +  L  +  S N L G            S+ +   L  +    N   G +P
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGT--------LPPSISSLPNLVGITFDGNRISGAIP 166

Query: 118 EAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQM 177
           ++ G+FS     ++++ N+L G IP    NL NL  +DLS N          G  +  Q 
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 178 LGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTI 237
           + L  N    ++   +G    L  L+   N + G++P  L + + L  L++  NNL G I
Sbjct: 226 IHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 238 PSE 240
           P  
Sbjct: 285 PQG 287

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  167 bits (426), Expect = 8e-51
 Identities = 67/261 (25%), Positives = 110/261 (42%), Gaps = 17/261 (6%)

Query: 3   DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTG--PIPVSISNASNLRELMI-GKNGFS 59
           D       G L          +  L+L+G       PIP S++N   L  L I G N   
Sbjct: 32  DCCNRTWLGVLCDTDT-QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 60  GKVP-SLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPE 118
           G +P ++  L +L  + I+  ++   G        + L     L  L  S N   G LP 
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNV--SGA-----IPDFLSQIKTLVTLDFSYNALSGTLPP 143

Query: 119 AVGNFSTRLGILSVAENQLFGNIPSGLRNLVNL-ELLDLSGNQFTSRIPGSIGDLQKLQM 177
           ++ +    L  ++   N++ G IP    +   L   + +S N+ T +IP +  +L  L  
Sbjct: 144 SISSL-PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAF 201

Query: 178 LGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTI 237
           + L+ N   G+     G+      ++ A+N L   +   +G  +NL  LDL NN + GT+
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTL 260

Query: 238 PSEVIGLSSLSIYLDLSQNQL 258
           P  +  L  L   L++S N L
Sbjct: 261 PQGLTQLKFLH-SLNVSFNNL 280

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  156 bits (396), Expect = 2e-46
 Identities = 59/235 (25%), Positives = 92/235 (39%), Gaps = 14/235 (5%)

Query: 6   FNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVP-S 64
            N L G +P  +   L  L  L +     +G IP  +S    L  L    N  SG +P S
Sbjct: 86  INNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144

Query: 65  LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRL-ELLQISDNNFGGMLPEAVGNF 123
           + +L  L  +    N +       +    +S  + S+L   + IS N   G +P    N 
Sbjct: 145 ISSLPNLVGITFDGNRI-------SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197

Query: 124 STRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGN 183
           +  L  + ++ N L G+      +  N + + L+ N     +   +G  + L  L L  N
Sbjct: 198 N--LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNN 254

Query: 184 KFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIP 238
           +  G +P  +  L  L +LN + N L G IP   G  Q   V    NN      P
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  146 bits (372), Expect = 8e-43
 Identities = 53/238 (22%), Positives = 83/238 (34%), Gaps = 37/238 (15%)

Query: 25  EGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKV---PSLENLHKLQRVIISQNHL 81
              +     + G +  + +    +  L +             SL NL  L  + I     
Sbjct: 29  PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIG---- 84

Query: 82  GNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNI 141
                                       NN  G +P A+   + +L  L +    + G I
Sbjct: 85  --------------------------GINNLVGPIPPAIAKLT-QLHYLYITHTNVSGAI 117

Query: 142 PSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMT 201
           P  L  +  L  LD S N  +  +P SI  L  L  +  +GN+  G IP S G+ + L T
Sbjct: 118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT 177

Query: 202 -LNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
            +  + N L G IP +     NL  +DL  N L G          +    + L++N L
Sbjct: 178 SMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQ-KIHLAKNSL 233

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  144 bits (367), Expect = 4e-42
 Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 8/176 (4%)

Query: 90  LEFVNSLVNASRL----ELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFG--NIPS 143
           L+    L N + L          +  + G+L +     + R+  L ++   L     IPS
Sbjct: 12  LQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQ-TYRVNNLDLSGLNLPKPYPIPS 70

Query: 144 GLRNLVNLELLDLSG-NQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTL 202
            L NL  L  L + G N     IP +I  L +L  L +      G IP  +  +  L+TL
Sbjct: 71  SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130

Query: 203 NFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
           +F+ N L G++P S+    NL+ +    N +SG IP      S L   + +S+N+L
Sbjct: 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 61.0 bits (149), Expect = 4e-11
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 3/82 (3%)

Query: 1   DFDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSG 60
             D   N L+G      G +  N + ++LA N     +   +  + NL  L +  N   G
Sbjct: 201 FVDLSRNMLEGDASVLFG-SDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYG 258

Query: 61  KVP-SLENLHKLQRVIISQNHL 81
            +P  L  L  L  + +S N+L
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNL 280

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  128 bits (324), Expect = 4e-34
 Identities = 49/270 (18%), Positives = 96/270 (35%), Gaps = 26/270 (9%)

Query: 6   FNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSG--KVP 63
           +NQL+G LP+  G +   L  LNLA NQ T            +  L    N       + 
Sbjct: 339 YNQLEGKLPA-FG-SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIF 396

Query: 64  SLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNF 123
             +++  +  +  S N +G+   K+      +      +  + +S+N       E     
Sbjct: 397 DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFST- 455

Query: 124 STRLGILSVAENQL-------FGNIPSGLRNLVNLELLDLSGNQFTSRIPGSI--GDLQK 174
            + L  +++  N L         +     +N   L  +DL  N+ T  +        L  
Sbjct: 456 GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPY 514

Query: 175 LQMLGLNGNKFLGEIPSSIGNLT------LLMTLNFAENMLEGSIPSSLGKCQNLIVLDL 228
           L  + L+ N    + P+   N +      +    +   N      P  +  C +L  L +
Sbjct: 515 LVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQI 573

Query: 229 YNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
            +N++   +  ++    ++S  LD+  N  
Sbjct: 574 GSNDIR-KVNEKI--TPNIS-VLDIKDNPN 599

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  126 bits (319), Expect = 2e-33
 Identities = 43/270 (15%), Positives = 89/270 (32%), Gaps = 26/270 (9%)

Query: 5   PFNQLQGSLPSDLGFTLPNLEGLNLAGNQF-TGPIPVSISNASNLRELMIGKNGFSGKVP 63
              +      +D       ++ + +  N   T P+  S+     L  L    N   GK+P
Sbjct: 289 EQLKDDWQALADAPV-GEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP 347

Query: 64  SLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNF 123
           +  +  KL  + ++ N +     +    F         +E L  + N    +        
Sbjct: 348 AFGSEIKLASLNLAYNQI----TEIPANFCGFTEQ---VENLSFAHNKLKYIPNIFDAKS 400

Query: 124 STRLGILSVAENQL-------FGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQ 176
            + +  +  + N++       F  +       +N+  ++LS NQ +            L 
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460

Query: 177 MLGLNGNKF-------LGEIPSSIGNLTLLMTLNFAENMLEGSIPS-SLGKCQNLIVLDL 228
            + L GN         L +   +  N  LL +++   N L              L+ +DL
Sbjct: 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDL 520

Query: 229 YNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
             N+ S   P++ +  S+L     +   + 
Sbjct: 521 SYNSFSK-FPTQPLNSSTLK-GFGIRNQRD 548

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  118 bits (299), Expect = 9e-31
 Identities = 28/251 (11%), Positives = 72/251 (28%), Gaps = 26/251 (10%)

Query: 21  LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKV-----PSLENLHKLQRVI 75
              + GL+L G   +G +P +I   + L  L +G +G            +      ++  
Sbjct: 80  NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQ 139

Query: 76  ISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAEN 135
             + H             +   + S L    I+ +     + ++    + +   +    N
Sbjct: 140 KMRMHYQK-----TFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI-TLKDTQIGQLSN 193

Query: 136 QLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGN 195
            +   +   +  L  L    +  + F +       + +  +                  N
Sbjct: 194 NITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-----EDLKWDN 247

Query: 196 LTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNL--------SGTIPSEVIGLSSL 247
           L  L  +          +P+ L     + ++++  N               ++      +
Sbjct: 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKI 307

Query: 248 SIYLDLSQNQL 258
            I + +  N L
Sbjct: 308 QI-IYIGYNNL 317

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  117 bits (295), Expect = 3e-30
 Identities = 43/262 (16%), Positives = 98/262 (37%), Gaps = 26/262 (9%)

Query: 7   NQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLE 66
           +  Q S+      TL + + +    N  T  +  ++   + LR+  +G + F  +     
Sbjct: 169 DPQQKSIKKSSRITLKDTQ-IGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEA 226

Query: 67  NLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTR 126
             ++      +  +   Y  +D         N   L  +++ +      LP  +      
Sbjct: 227 WENE------NSEYAQQYKTED-----LKWDNLKDLTDVEVYNCPNLTKLPTFLKAL-PE 274

Query: 127 LGILSVAENQL--------FGNIPSGLRNLVNLELLDLSGNQFTS-RIPGSIGDLQKLQM 177
           + +++VA N+              +       ++++ +  N   +  +  S+  ++KL M
Sbjct: 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGM 334

Query: 178 LGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTI 237
           L    N+  G++P + G+   L +LN A N +     +  G  + +  L   +N L    
Sbjct: 335 LECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIP 393

Query: 238 PSEVIG-LSSLSIYLDLSQNQL 258
                  +S +S  +D S N++
Sbjct: 394 NIFDAKSVSVMS-AIDFSYNEI 414

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  117 bits (295), Expect = 4e-30
 Identities = 30/233 (12%), Positives = 78/233 (33%), Gaps = 12/233 (5%)

Query: 28  NLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVP-SLENLHKLQRVIISQNHLGNYGE 86
           N   + +     VS+++   +  L +   G SG+VP ++  L +L+ + +  +       
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN-- 120

Query: 87  KDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFS-TRLGILSVAENQLFGNIPSGL 145
            + L     +      E  Q    ++     +       + L    +  +    +I    
Sbjct: 121 -ERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS 179

Query: 146 RNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFA 205
           R  +    +    N  T  +  ++  L KL+   +  + F+ E                 
Sbjct: 180 RITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ-- 236

Query: 206 ENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
                 +        ++L  +++YN      +P+ +  L  +   ++++ N+ 
Sbjct: 237 ---QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ-LINVACNRG 285

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 72.4 bits (178), Expect = 1e-14
 Identities = 35/193 (18%), Positives = 58/193 (30%), Gaps = 28/193 (14%)

Query: 7   NQLQGSLPSDLGFTLPNLEGLNLAGNQFTG-------PIPVSISNASNLRELMIGKNGFS 59
           NQ+          T   L  +NL GN  T            +  N   L  + +  N  +
Sbjct: 443 NQISKFPKELFS-TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT 501

Query: 60  GKVPSLE--NLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQI------SDNN 111
                     L  L  + +S N           +F    +N+S L+   I        N 
Sbjct: 502 KLSDDFRATTLPYLVGIDLSYNSFS--------KFPTQPLNSSTLKGFGIRNQRDAQGNR 553

Query: 112 FGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGD 171
                PE +      L  L +  N +   +   +    N+ +LD+  N   S     +  
Sbjct: 554 TLREWPEGITLC-PSLTQLQIGSNDI-RKVNEKI--TPNISVLDIKDNPNISIDLSYVCP 609

Query: 172 LQKLQMLGLNGNK 184
             +  M  L  +K
Sbjct: 610 YIEAGMYMLFYDK 622

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  118 bits (299), Expect = 5e-32
 Identities = 50/256 (19%), Positives = 92/256 (35%), Gaps = 21/256 (8%)

Query: 12  SLPSDLGF-TLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHK 70
           +    L   T P    L L         P      S+L+ + I   G      +++    
Sbjct: 70  ATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAG 128

Query: 71  LQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFS------ 124
           L+ + +++N L             S+ + +RL  L I        LPE + +        
Sbjct: 129 LETLTLARNPLR--------ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180

Query: 125 --TRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNG 182
               L  L +    +  ++P+ + NL NL+ L +  +  ++ +  +I  L KL+ L L G
Sbjct: 181 GLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRG 238

Query: 183 NKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVI 242
              L   P   G    L  L   +     ++P  + +   L  LDL        +PS + 
Sbjct: 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298

Query: 243 GLSSLSIYLDLSQNQL 258
            L +  I + +  +  
Sbjct: 299 QLPANCI-ILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  108 bits (273), Expect = 3e-28
 Identities = 46/233 (19%), Positives = 84/233 (36%), Gaps = 14/233 (6%)

Query: 7   NQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLE 66
             L    P      L +L+ + +        +P ++   + L  L + +N       S+ 
Sbjct: 91  VPLP-QFPDQAF-RLSHLQHMTIDAAGLME-LPDTMQQFAGLETLTLARNPLRALPASIA 147

Query: 67  NLHKLQRVIIS-QNHLG----NYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVG 121
           +L++L+ + I     L          D       LVN   L+ L++        LP ++ 
Sbjct: 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN---LQSLRLEWTGIRS-LPASIA 203

Query: 122 NFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLN 181
           N    L  L +  + L   +   + +L  LE LDL G       P   G    L+ L L 
Sbjct: 204 NL-QNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK 261

Query: 182 GNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLS 234
               L  +P  I  LT L  L+    +    +PS + +     ++ +  +  +
Sbjct: 262 DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 98.9 bits (247), Expect = 1e-24
 Identities = 46/247 (18%), Positives = 83/247 (33%), Gaps = 29/247 (11%)

Query: 21  LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNH 80
               E L   G+    P    +   S  +                 N +  Q    +   
Sbjct: 11  SSGRENLYFQGSTALRPYHDVL---SQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRA 67

Query: 81  LGNYGEKDNLEFVNSLVNASRLEL--LQISDNNFGGMLPEAVGNFSTRLGILSVAENQLF 138
           L            + L +A++     L++         P+      + L  +++    L 
Sbjct: 68  LK--------ATADLLEDATQPGRVALELRSVPL-PQFPDQAFRL-SHLQHMTIDAAGL- 116

Query: 139 GNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTL 198
             +P  ++    LE L L+ N   + +P SI  L +L+ L +     L E+P  + +   
Sbjct: 117 MELPDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDA 175

Query: 199 ---------LMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSI 249
                    L +L      +  S+P+S+   QNL  L + N+ LS  +   +  L  L  
Sbjct: 176 SGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKL-E 232

Query: 250 YLDLSQN 256
            LDL   
Sbjct: 233 ELDLRGC 239

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 18/135 (13%), Positives = 35/135 (25%), Gaps = 24/135 (17%)

Query: 145 LRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNG-------------------NKF 185
             +    E L   G+         +   Q+      N                     + 
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRA 67

Query: 186 LGEIPSSIGNLTL--LMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIG 243
           L      + + T    + L      L    P    +  +L  + +    L   +P  +  
Sbjct: 68  LKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQ 125

Query: 244 LSSLSIYLDLSQNQL 258
            + L   L L++N L
Sbjct: 126 FAGL-ETLTLARNPL 139

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 12/112 (10%), Positives = 24/112 (21%), Gaps = 23/112 (20%)

Query: 168 SIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEG---------------- 211
                   + L   G+  L      +         +                        
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGR 66

Query: 212 ---SIPSSLGKCQ--NLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
              +    L        + L+L +  L    P +   LS L  ++ +    L
Sbjct: 67  ALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHL-QHMTIDAAGL 116

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  121 bits (305), Expect = 2e-31
 Identities = 65/286 (22%), Positives = 101/286 (35%), Gaps = 35/286 (12%)

Query: 6   FNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSG-KVPS 64
            N+L         F   NL  L+L  N              NL  L +  NG S  K+ +
Sbjct: 82  HNELSQLSDKTFAF-CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT 140

Query: 65  LENLHKLQRVIISQNHLGNYGEKDNLEFVNS-------------------LVNASRLELL 105
              L  LQ +++S N +     ++   F NS                        RL  L
Sbjct: 141 QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL 200

Query: 106 QISDNNFGGMLPEAVGNFS--TRLGILSVAENQLFGNIPSGLRNL--VNLELLDLSGNQF 161
            +++   G  L E +      T +  LS++ +QL     +    L   NL +LDLS N  
Sbjct: 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260

Query: 162 TSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSI-------- 213
                 S   L +L+   L  N        S+  L  +  LN   +  + SI        
Sbjct: 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI 320

Query: 214 -PSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
              S    + L  L++ +N++ G   +   GL +L  YL LS +  
Sbjct: 321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK-YLSLSNSFT 365

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  120 bits (302), Expect = 4e-31
 Identities = 52/260 (20%), Positives = 95/260 (36%), Gaps = 16/260 (6%)

Query: 6   FNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVP-S 64
           FN +    P      LP L+ LNL  N+ +     + +  +NL EL +  N         
Sbjct: 58  FNTISKLEPELCQ-KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP 116

Query: 65  LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFS 124
                 L  + +S N L       +   + + V    L+ L +S+N    +  E +  F+
Sbjct: 117 FVKQKNLITLDLSHNGL-------SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 169

Query: 125 -TRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGD---LQKLQMLGL 180
            + L  L ++ NQ+    P     +  L  L L+  Q    +   +        ++ L L
Sbjct: 170 NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL 229

Query: 181 NGNKFLGEIPSSIGNLTL--LMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIP 238
           + ++      ++   L    L  L+ + N L      S      L    L  NN+     
Sbjct: 230 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 289

Query: 239 SEVIGLSSLSIYLDLSQNQL 258
             + GL ++  YL+L ++  
Sbjct: 290 HSLHGLFNVR-YLNLKRSFT 308

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  117 bits (294), Expect = 6e-30
 Identities = 58/254 (22%), Positives = 90/254 (35%), Gaps = 18/254 (7%)

Query: 12  SLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVP-SLENLHK 70
            +P DL     N+  LNL  NQ       + +  S L  L +G N  S   P   + L  
Sbjct: 18  QVPDDL---PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPM 74

Query: 71  LQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGIL 130
           L+ + +  N L    +        +    + L  L +  N+   +           L  L
Sbjct: 75  LKVLNLQHNELSQLSD-------KTFAFCTNLTELHLMSNSIQKIKNNPFVKQ-KNLITL 126

Query: 131 SVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQ--KLQMLGLNGNKFLGE 188
            ++ N L          L NL+ L LS N+  +     +       L+ L L+ N+    
Sbjct: 127 DLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF 186

Query: 189 IPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQN---LIVLDLYNNNLSGTIPSEVIGLS 245
            P     +  L  L      L  S+   L        +  L L N+ LS T  +  +GL 
Sbjct: 187 SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK 246

Query: 246 SLSI-YLDLSQNQL 258
             ++  LDLS N L
Sbjct: 247 WTNLTMLDLSYNNL 260

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  114 bits (287), Expect = 4e-29
 Identities = 53/264 (20%), Positives = 99/264 (37%), Gaps = 22/264 (8%)

Query: 6   FNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVS-ISNASNLRELMIGKNGFSGKVP- 63
            N++           L +LE L+L  N+    +         N+ E+ +  N +      
Sbjct: 390 KNKISKIESDAFS-WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRN 448

Query: 64  SLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNF 123
           S   +  LQR+++ +  L     K+     +       L +L +S+NN   +  + +   
Sbjct: 449 SFALVPSLQRLMLRRVAL-----KNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 503

Query: 124 STRLGILSVAENQL--------FGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKL 175
             +L IL +  N L         G     L+ L +L +L+L  N F         DL +L
Sbjct: 504 -EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562

Query: 176 QMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKC-QNLIVLDLYNNNLS 234
           +++ L  N       S   N   L +LN  +N++        G   +NL  LD+  N   
Sbjct: 563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622

Query: 235 GTIPSEVIGLSSLSIYLDLSQNQL 258
            T  S    ++    +++ +   +
Sbjct: 623 CTCES----IAWFVNWINETHTNI 642

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  108 bits (273), Expect = 3e-27
 Identities = 46/271 (16%), Positives = 86/271 (31%), Gaps = 25/271 (9%)

Query: 6   FNQLQGSLPSDLG-FTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS 64
            N++Q     +L  F   +L+ L L+ NQ     P        L  L +        +  
Sbjct: 154 NNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE 213

Query: 65  ----LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAV 120
                     ++ + +S + L               +  + L +L +S NN   +  ++ 
Sbjct: 214 KLCLELANTSIRNLSLSNSQL-----STTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF 268

Query: 121 GNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGN---------QFTSRIPGSIGD 171
                +L    +  N +       L  L N+  L+L  +                 S   
Sbjct: 269 AWL-PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327

Query: 172 LQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLG----KCQNLIVLD 227
           L+ L+ L +  N   G   +    L  L  L+ + +       ++          L +L+
Sbjct: 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 387

Query: 228 LYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
           L  N +S         L  L   LDL  N++
Sbjct: 388 LTKNKISKIESDAFSWLGHLE-VLDLGLNEI 417

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  106 bits (266), Expect = 3e-26
 Identities = 47/263 (17%), Positives = 89/263 (33%), Gaps = 34/263 (12%)

Query: 6   FNQLQGSLPSDLGF--TLPNLEGLNLAGNQFTGPIPVSISN--ASNLRELMIGKNGFSGK 61
             QL  SL   L       ++  L+L+ +Q +     +      +NL  L +  N  +  
Sbjct: 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263

Query: 62  VP-SLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAV 120
              S   L +L+   +  N++ +        F +SL     +  L +  +          
Sbjct: 264 GNDSFAWLPQLEYFFLEYNNIQH-------LFSHSLHGLFNVRYLNLKRS---------- 306

Query: 121 GNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGL 180
                     S++   L        + L  LE L++  N            L  L+ L L
Sbjct: 307 ------FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360

Query: 181 NGNKF-LGEIPSSIG---NLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGT 236
           + +   L  + +        + L  LN  +N +      +     +L VLDL  N +   
Sbjct: 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 420

Query: 237 IPSEVI-GLSSLSIYLDLSQNQL 258
           +  +   GL ++   + LS N+ 
Sbjct: 421 LTGQEWRGLENIF-EIYLSYNKY 442

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 98.1 bits (245), Expect = 2e-23
 Identities = 39/158 (24%), Positives = 63/158 (39%), Gaps = 5/158 (3%)

Query: 101 RLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQ 160
             E+   S       L +   +  T + +L++  NQL     +       L  LD+  N 
Sbjct: 5   SHEVADCSHLK----LTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 161 FTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKC 220
            +   P     L  L++L L  N+       +    T L  L+   N ++    +   K 
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 221 QNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
           +NLI LDL +N LS T     + L +L   L LS N++
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQ-ELLLSNNKI 157

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 72.3 bits (178), Expect = 9e-15
 Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 4/110 (3%)

Query: 149 VNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENM 208
           V+ E+ D S  + T  +P  +     + +L L  N+      ++    + L +L+   N 
Sbjct: 4   VSHEVADCSHLKLTQ-VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 209 LEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
           +    P    K   L VL+L +N LS          ++L+  L L  N +
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT-ELHLMSNSI 109

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  120 bits (302), Expect = 4e-31
 Identities = 53/256 (20%), Positives = 89/256 (34%), Gaps = 35/256 (13%)

Query: 6   FNQLQGSLPSDLGFTLPNLEGLNLAGNQ--FTGPIPVSISNASNLRELMIGKNGFSGKVP 63
           F   +G         LP+LE L+L+ N   F G    S    ++L+ L +  NG      
Sbjct: 332 FTSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS 390

Query: 64  SLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNF 123
           +   L +L+                                L    +N   M   +V   
Sbjct: 391 NFLGLEQLEH-------------------------------LDFQHSNLKQMSEFSVFLS 419

Query: 124 STRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRI-PGSIGDLQKLQMLGLNG 182
              L  L ++              L +LE+L ++GN F     P    +L+ L  L L+ 
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

Query: 183 NKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVI 242
            +     P++  +L+ L  LN + N              +L VLD   N++  +   E+ 
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 539

Query: 243 GLSSLSIYLDLSQNQL 258
              S   +L+L+QN  
Sbjct: 540 HFPSSLAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  111 bits (280), Expect = 3e-28
 Identities = 58/280 (20%), Positives = 91/280 (32%), Gaps = 32/280 (11%)

Query: 1   DFDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSG 60
           +F   +         DL   L N+   +L             S     + L +    F  
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQ 318

Query: 61  --------------------KVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNAS 100
                                  S  +L  L+ + +S+N L   G         S    +
Sbjct: 319 FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS-----QSDFGTT 373

Query: 101 RLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSG-LRNLVNLELLDLSGN 159
            L+ L +S N    M    +G    +L  L    + L          +L NL  LD+S  
Sbjct: 374 SLKYLDLSFNGVITMSSNFLG--LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431

Query: 160 QFTSRIPGSIGDLQKLQMLGLNGNKFLGEI-PSSIGNLTLLMTLNFAENMLEGSIPSSLG 218
                  G    L  L++L + GN F     P     L  L  L+ ++  LE   P++  
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491

Query: 219 KCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
              +L VL++ +NN           L+SL   LD S N +
Sbjct: 492 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ-VLDYSLNHI 530

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  105 bits (265), Expect = 3e-26
 Identities = 48/246 (19%), Positives = 90/246 (36%), Gaps = 13/246 (5%)

Query: 12  SLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS--LENLH 69
              S   F   +L+ L+L+ N     +  +      L  L    +            +L 
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421

Query: 70  KLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGI 129
            L  + IS  H         + F       S LE+L+++ N+F       +      L  
Sbjct: 422 NLIYLDISHTHT-------RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474

Query: 130 LSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEI 189
           L +++ QL    P+   +L +L++L++S N F S        L  LQ+L  + N  +   
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 534

Query: 190 PSSIGNL-TLLMTLNFAENMLEGSIPSS--LGKCQNLIVLDLYNNNLSGTIPSEVIGLSS 246
              + +  + L  LN  +N    +      L   ++   L +    +    PS+  G+  
Sbjct: 535 KQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPV 594

Query: 247 LSIYLD 252
           LS+ + 
Sbjct: 595 LSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 99.3 bits (248), Expect = 7e-24
 Identities = 50/256 (19%), Positives = 92/256 (35%), Gaps = 21/256 (8%)

Query: 12  SLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVP-SLENLHK 70
            +P +L     + + L+L+ N        S  +   L+ L + +         + ++L  
Sbjct: 21  KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH 77

Query: 71  LQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGIL 130
           L  +I++ N + +           +    S L+ L   + N   +    +G+    L  L
Sbjct: 78  LSTLILTGNPIQSLAL-------GAFSGLSSLQKLVAVETNLASLENFPIGHL-KTLKEL 129

Query: 131 SVAENQL-FGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQM----LGLNGNKF 185
           +VA N +    +P    NL NLE LDLS N+  S     +  L ++ +    L L+ N  
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 186 LGEIPSSIGNLTLLMTLNFAENMLEGSIPS-SLGKCQNLIVLDLYNNNLSGTIPSEVIGL 244
               P +   + L   L    N    ++    +     L V  L           E    
Sbjct: 190 NFIQPGAFKEIRLH-KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248

Query: 245 SSLS--IYLDLSQNQL 258
           S+L     L + + +L
Sbjct: 249 SALEGLCNLTIEEFRL 264

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 89.3 bits (222), Expect = 2e-20
 Identities = 53/284 (18%), Positives = 90/284 (31%), Gaps = 39/284 (13%)

Query: 6   FNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLR----ELMIGKNGFSGK 61
            N +Q     +    L NLE L+L+ N+        +     +      L +  N  +  
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192

Query: 62  VPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVG 121
            P      +L ++ +  N       K        +   + LE+ ++    F         
Sbjct: 193 QPGAFKEIRLHKLTLRNNFDSLNVMK------TCIQGLAGLEVHRLVLGEFRNEGNLEKF 246

Query: 122 NFST--RLGILSVAENQL------FGNIPSGLRNLVNLELLDLSGNQFTSRIPGSI-GDL 172
           + S    L  L++ E +L        +I      L N+    L           S     
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGW 306

Query: 173 QKLQMLG----------------LNGNKFLGEIPSSIGNLTLLMTLNFAENML--EGSIP 214
           Q L+++                 L      G    S  +L  L  L+ + N L  +G   
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS 366

Query: 215 SSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
            S     +L  LDL  N +  T+ S  +GL  L  +LD   + L
Sbjct: 367 QSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLE-HLDFQHSNL 408

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 80.5 bits (199), Expect = 2e-17
 Identities = 36/218 (16%), Positives = 65/218 (29%), Gaps = 33/218 (15%)

Query: 3   DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKV 62
           DF  + L+      +  +L NL  L+++            +  S+L  L +  N F    
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461

Query: 63  PSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGN 122
                                          +       L  L +S      + P A  +
Sbjct: 462 LP-----------------------------DIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 123 FSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDL-QKLQMLGLN 181
             + L +L+++ N  F       + L +L++LD S N   +     +      L  L L 
Sbjct: 493 L-SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 551

Query: 182 GNKFLGEIPSS--IGNLTLLMTLNFAENMLEGSIPSSL 217
            N F         +  +     L      +E + PS  
Sbjct: 552 QNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 589

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  116 bits (292), Expect = 9e-30
 Identities = 41/269 (15%), Positives = 78/269 (28%), Gaps = 27/269 (10%)

Query: 5   PFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTG-PIPVSISNASNLRELMIGKNGFSGKVP 63
                   L  D   T P ++   +  N     P   S+     L  L    N     + 
Sbjct: 532 QLKADWTRLADDED-TGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE 589

Query: 64  SLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNF 123
           +     KL  + +  N +    E       +      ++E L  S N    +        
Sbjct: 590 AFGTNVKLTDLKLDYNQIEEIPE-------DFCAFTDQVEGLGFSHNKLKYIPNIFNAKS 642

Query: 124 STRLGILSVAENQLFGNIPS-----GLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQML 178
              +G +  + N++     +          +N   + LS N+              +  +
Sbjct: 643 VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTI 702

Query: 179 GLNGNKF-------LGEIPSSIGNLTLLMTLNFAENMLEGSIPSSL--GKCQNLIVLDLY 229
            L+ N         L     +  N  LL T++   N L  S+           L  +D+ 
Sbjct: 703 ILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVS 761

Query: 230 NNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
            N  S + P++ +  S L     +   + 
Sbjct: 762 YNCFS-SFPTQPLNSSQLK-AFGIRHQRD 788

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  115 bits (290), Expect = 2e-29
 Identities = 47/287 (16%), Positives = 94/287 (32%), Gaps = 33/287 (11%)

Query: 1   DFDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSG 60
           +F+   +        DL      + GL+LAG    G +P +I   + L+ L  G +  + 
Sbjct: 303 NFNKELDMWGDQPGVDLD-NNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETV 361

Query: 61  KVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAV 120
                 +      +   + H      K      +  +N S L    I+ N     + +  
Sbjct: 362 SGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDS 421

Query: 121 GNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTS----------------- 163
                   I ++  N++   I   ++ L  L+++  + + FT                  
Sbjct: 422 RISLKDTQIGNL-TNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ 479

Query: 164 --RIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEG---------S 212
                 S  +L+ L  + L     + ++P  + +L  L +LN A N              
Sbjct: 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR 539

Query: 213 IPSSLGKCQNLIVLDLYNNNLSGTIPSEVIG-LSSLSIYLDLSQNQL 258
           +         + +  +  NNL     S  +  +  L   LD   N++
Sbjct: 540 LADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLG-LLDCVHNKV 585

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  114 bits (286), Expect = 6e-29
 Identities = 48/275 (17%), Positives = 97/275 (35%), Gaps = 35/275 (12%)

Query: 6   FNQLQGSLPSDLGFTLPNLEGLNLAGNQFTG-PIPVSISNASNLRELMIGKNGFSGKVPS 64
           +NQ++  +P D       +EGL  + N+    P   +  +   +  +    N    +  +
Sbjct: 604 YNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662

Query: 65  LE------NLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPE 118
           +              V +S N +  +               S +  + +S+N    +   
Sbjct: 663 ISCSMDDYKGINASTVTLSYNEIQKFPT-------ELFATGSPISTIILSNNLMTSIPEN 715

Query: 119 AVGNFS------TRLGILSVAENQLFGNIPSGLR--NLVNLELLDLSGNQFTSRIPGSIG 170
           ++            L  + +  N+L  ++    R   L  L  +D+S N F+S  P    
Sbjct: 716 SLKPKDGNYKNTYLLTTIDLRFNKL-TSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPL 773

Query: 171 DLQKLQMLGL------NGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLI 224
           +  +L+  G+       GN+ L + P+ I     L+ L    N +   +   L     L 
Sbjct: 774 NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLY 830

Query: 225 VLDL-YNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
           +LD+  N N+S  + S    + +    L   + Q 
Sbjct: 831 ILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  105 bits (264), Expect = 4e-27
 Identities = 45/253 (17%), Positives = 93/253 (36%), Gaps = 24/253 (9%)

Query: 7   NQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLE 66
           + L+    + L  +  N++ L+L+GN  +      ++  + L  L +  N    +   LE
Sbjct: 20  SSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETLDLE 77

Query: 67  NLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTR 126
           +L  L+ + ++ N++              L+    +E L  ++NN    +  + G     
Sbjct: 78  SLSTLRTLDLNNNYV------------QELLVGPSIETLHAANNNI-SRVSCSRG---QG 121

Query: 127 LGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTS-RIPGSIGDLQKLQMLGLNGNKF 185
              + +A N++             ++ LDL  N+  +            L+ L L  N  
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF- 180

Query: 186 LGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLS 245
           + ++   +     L TL+ + N L   +         +  + L NN L   I   +    
Sbjct: 181 IYDVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237

Query: 246 SLSIYLDLSQNQL 258
           +L  + DL  N  
Sbjct: 238 NLE-HFDLRGNGF 249

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 71.2 bits (175), Expect = 1e-14
 Identities = 34/193 (17%), Positives = 69/193 (35%), Gaps = 18/193 (9%)

Query: 66  ENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFST 125
           +N ++ +   ++ + L            +   +A  ++ L +S N    +    +  F T
Sbjct: 7   QNGNRYKIEKVTDSSLKQALA-------SLRQSAWNVKELDLSGNPLSQISAADLAPF-T 58

Query: 126 RLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKF 185
           +L +L+++ N L       L +L  L  LDL+ N         +     ++ L    N  
Sbjct: 59  KLELLNLSSNVL-YETLD-LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNN- 110

Query: 186 LGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLS 245
           +  +  S         +  A N +        G    +  LDL  N +     +E+   S
Sbjct: 111 ISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 246 SLSIYLDLSQNQL 258
               +L+L  N +
Sbjct: 169 DTLEHLNLQYNFI 181

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 63.1 bits (154), Expect = 7e-12
 Identities = 34/188 (18%), Positives = 61/188 (32%), Gaps = 15/188 (7%)

Query: 20  TLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSG--KVPSLENLHKLQRVIIS 77
                + + LA N+ T    +     S ++ L +  N            +   L+ + + 
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 78  QNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQL 137
            N          +  V   V  ++L+ L +S N     +     +    +  +S+  N+L
Sbjct: 178 YN---------FIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSA-AGVTWISLRNNKL 226

Query: 138 FGNIPSGLRNLVNLELLDLSGNQFTS-RIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNL 196
              I   LR   NLE  DL GN F    +       Q++Q +     K L         +
Sbjct: 227 -VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV 285

Query: 197 TLLMTLNF 204
             L     
Sbjct: 286 PTLGHYGA 293

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.5 bits (150), Expect = 3e-11
 Identities = 23/118 (19%), Positives = 43/118 (36%), Gaps = 8/118 (6%)

Query: 141 IPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLM 200
           I    +N    ++  ++ +     +         ++ L L+GN       + +   T L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 201 TLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
            LN + N+L       L     L  LDL NN +      E++   S+   L  + N +
Sbjct: 62  LLNLSSNVL--YETLDLESLSTLRTLDLNNNYV-----QELLVGPSI-ETLHAANNNI 111

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  105 bits (264), Expect = 5e-26
 Identities = 43/244 (17%), Positives = 79/244 (32%), Gaps = 15/244 (6%)

Query: 19  FTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVP---SLENLHKLQRVI 75
             LP L+ L L  N+ +  I        +L  L + +N  S       S    + L+ + 
Sbjct: 325 LDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 382

Query: 76  ISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAEN 135
           +S N               + +    L+ L    +    +   +      +L  L ++  
Sbjct: 383 LSFNGAI--------IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434

Query: 136 QLFGNIPSGLRNLVNLELLDLSGNQFTSRIP-GSIGDLQKLQMLGLNGNKFLGEIPSSIG 194
               +       L +L  L ++GN F          +   L  L L+  +          
Sbjct: 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD 494

Query: 195 NLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLS 254
            L  L  LN + N L     S   +  +L  LD   N +  +         SL+ + +L+
Sbjct: 495 TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLA-FFNLT 553

Query: 255 QNQL 258
            N +
Sbjct: 554 NNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  100 bits (252), Expect = 2e-24
 Identities = 56/217 (25%), Positives = 87/217 (40%), Gaps = 10/217 (4%)

Query: 21  LPNLEGLNLAGNQFT--GPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQ 78
           LP+L  L+L+ N  +  G    S    ++LR L +  NG      +   L +LQ +    
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQH 408

Query: 79  NHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLF 138
           + L        +   ++ ++  +L  L IS  N             T L  L +A N   
Sbjct: 409 STL------KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL-TSLNTLKMAGNSFK 461

Query: 139 GNIPSG-LRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLT 197
            N  S    N  NL  LDLS  Q      G    L +LQ+L ++ N  L    S    L 
Sbjct: 462 DNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY 521

Query: 198 LLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLS 234
            L TL+ + N +E S        ++L   +L NN+++
Sbjct: 522 SLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 87.4 bits (217), Expect = 8e-20
 Identities = 49/254 (19%), Positives = 89/254 (35%), Gaps = 19/254 (7%)

Query: 12  SLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVP-SLENLHK 70
            +P D+     + + ++L+ N        S SN S L+ L + +         +   LH 
Sbjct: 25  KVPDDIP---SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHH 81

Query: 71  LQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGIL 130
           L  +I++ N + ++          S    + LE L   +     +    +G     L  L
Sbjct: 82  LSNLILTGNPIQSFSP-------GSFSGLTSLENLVAVETKLASLESFPIGQL-ITLKKL 133

Query: 131 SVAENQLFG-NIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQM----LGLNGNKF 185
           +VA N +    +P+   NL NL  +DLS N   +     +  L++       L ++ N  
Sbjct: 134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN-P 192

Query: 186 LGEIPSSIGNLTLLMTLNFAENMLEGSIPS-SLGKCQNLIVLDLYNNNLSGTIPSEVIGL 244
           +  I         L  L    N    +I    L     L V  L           E+   
Sbjct: 193 IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEP 252

Query: 245 SSLSIYLDLSQNQL 258
           S +    D++ ++ 
Sbjct: 253 SIMEGLCDVTIDEF 266

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 84.3 bits (209), Expect = 8e-19
 Identities = 35/194 (18%), Positives = 63/194 (32%), Gaps = 10/194 (5%)

Query: 18  GFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVP--SLENLHKLQRVI 75
                +L  L+L+ N     +  +      L+ L    +         +  +L KL  + 
Sbjct: 372 DLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD 430

Query: 76  ISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAEN 135
           IS  +          +F    +  + L  L+++ N+F       V   +T L  L +++ 
Sbjct: 431 ISYTNTKI-------DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483

Query: 136 QLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGN 195
           QL          L  L+LL++S N            L  L  L  + N+           
Sbjct: 484 QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHF 543

Query: 196 LTLLMTLNFAENML 209
              L   N   N +
Sbjct: 544 PKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 83.9 bits (208), Expect = 1e-18
 Identities = 46/267 (17%), Positives = 86/267 (32%), Gaps = 24/267 (8%)

Query: 6   FNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVP-S 64
           FN L+             L+ L+L+  +       +     +L  L++  N      P S
Sbjct: 41  FNPLKILKSYSFSN-FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS 99

Query: 65  LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFS 124
              L  L+ ++  +  L +            +     L+ L ++ N        A  +  
Sbjct: 100 FSGLTSLENLVAVETKLAS-------LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL 152

Query: 125 TRLGILSVAENQLFGNIPSGLRNLVNLEL----LDLSGNQFTSRIPGSIGDLQKLQMLGL 180
           T L  + ++ N +     + L+ L         LD+S N     I        KL  L L
Sbjct: 153 TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGIKLHELTL 211

Query: 181 NGNKFLGEIPSSIGN-------LTLLMTLNFAENMLEGSIPSSLGKCQNLIV--LDLYNN 231
            GN     I  +            L++     E  LE   PS +    ++ +    L   
Sbjct: 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271

Query: 232 NLSGTIPSEVIGLSSLSIYLDLSQNQL 258
           N       +   L+++S  + L+   +
Sbjct: 272 NDFSDDIVKFHCLANVS-AMSLAGVSI 297

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 78.2 bits (193), Expect = 9e-17
 Identities = 51/283 (18%), Positives = 85/283 (30%), Gaps = 39/283 (13%)

Query: 6   FNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVP-- 63
            N +Q   P      L +LE L     +        I     L++L +  N         
Sbjct: 89  GNPIQSFSPGSFSG-LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA 147

Query: 64  SLENLHKLQRVIISQNHLGNYGEKD-------------------NLEFVNSLV-NASRLE 103
              NL  L  V +S N++      D                    ++F+        +L 
Sbjct: 148 YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLH 207

Query: 104 LLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNI------PSGLRNLVNL--ELLD 155
            L +  N     + +        L +  +   +           PS +  L ++  +   
Sbjct: 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR 267

Query: 156 LSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPS 215
           L+     S        L  +  + L G     +    +       +L+     L+     
Sbjct: 268 LTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQFPTL 325

Query: 216 SLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
            L     L  L L  N  S  I  + + L SLS YLDLS+N L
Sbjct: 326 DL---PFLKSLTLTMNKGS--ISFKKVALPSLS-YLDLSRNAL 362

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  104 bits (261), Expect = 1e-25
 Identities = 45/258 (17%), Positives = 92/258 (35%), Gaps = 19/258 (7%)

Query: 7   NQLQGSLPSDLGFTLPNLEGLNLAGNQFT--GPIPVSISNASNLRELMIGKNGFSGKVP- 63
           N  +  L +     L NL  L+L+ +         + + N S+L+ L +  N        
Sbjct: 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE 394

Query: 64  SLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNF 123
           + +   +L+ + ++   L         +  +   N   L++L +S +       +     
Sbjct: 395 AFKECPQLELLDLAFTRL------KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL 448

Query: 124 STRLGILSVAENQLFGNI---PSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGL 180
              L  L++  N          + L+ L  LE+L LS    +S    +   L+ +  + L
Sbjct: 449 P-ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507

Query: 181 NGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSE 240
           + N+       ++ +L  +  LN A N +   +PS L        ++L  N L  T    
Sbjct: 508 SHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT---- 562

Query: 241 VIGLSSLSIYLDLSQNQL 258
                    +   +  +L
Sbjct: 563 -CSNIYFLEWYKENMQKL 579

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  100 bits (252), Expect = 2e-24
 Identities = 44/252 (17%), Positives = 83/252 (32%), Gaps = 16/252 (6%)

Query: 12  SLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVP-SLENLHK 70
            +P  L     + E L  + N        + S   NL  L + +         + ++ H+
Sbjct: 26  EIPGTL---PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHR 82

Query: 71  LQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGIL 130
           L  ++++ N L    E        +L     L+ L         +    + N    L  L
Sbjct: 83  LDTLVLTANPLIFMAE-------TALSGPKALKHLFFIQTGISSIDFIPLHN-QKTLESL 134

Query: 131 SVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNK-FLGEI 189
            +  N +             L++LD   N         +  LQ+   L LN N   +  I
Sbjct: 135 YLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGI 194

Query: 190 PSSIGNLTLLMTLNFAENMLEGSIPSSLGKC--QNLIVLDLYNNNLSGTIPSEVIGLSSL 247
                +  +  +LNF        I   L     Q+L +    + +     P+   GL  +
Sbjct: 195 EPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM 254

Query: 248 SI-YLDLSQNQL 258
           S+  ++L ++  
Sbjct: 255 SVESINLQKHYF 266

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 99.7 bits (249), Expect = 4e-24
 Identities = 47/244 (19%), Positives = 87/244 (35%), Gaps = 16/244 (6%)

Query: 21  LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVP-SLENLHKLQRVIISQN 79
              L+ L L  N        ++S    L+ L   + G S      L N   L+ + +  N
Sbjct: 80  QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN 139

Query: 80  HLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNF-STRLGILSVAENQLF 138
           H+ +                 +L++L   +N    +  E + +        L++  N + 
Sbjct: 140 HISSIKL-------PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI- 191

Query: 139 GNIPSGLRNLVNLELLDLSGNQFTSRIPGSIG--DLQKLQMLGLNGNKFLGEIPSSIGNL 196
             I  G  +    + L+  G Q    I   +    +Q L +            P+    L
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251

Query: 197 TL--LMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLS 254
               + ++N  ++       ++      L  LDL   +LS  +PS ++GLS+L   L LS
Sbjct: 252 CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLK-KLVLS 309

Query: 255 QNQL 258
            N+ 
Sbjct: 310 ANKF 313

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 98.5 bits (246), Expect = 1e-23
 Identities = 50/263 (19%), Positives = 85/263 (32%), Gaps = 18/263 (6%)

Query: 3   DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKV 62
           +F FN L     +     L NL  L+L   Q       +  +   L  L++  N      
Sbjct: 39  EFSFNVLPTIQNTTFSR-LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMA 97

Query: 63  P-SLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVG 121
             +L     L+ +   Q  +       +      L N   LE L +  N+   +      
Sbjct: 98  ETALSGPKALKHLFFIQTGI-------SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF 150

Query: 122 NFSTRLGILSVAENQLFGNIPSGLRNLVNLEL--LDLSGNQFTSRIPGSIGDLQKLQMLG 179
             + +L +L    N +       + +L       L+L+GN     I     D    Q L 
Sbjct: 151 P-TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLN 208

Query: 180 LNGNKFLGEIPSSIGNLTL--LMTLNFAENMLEGSIPSSLGKCQ--NLIVLDLYNNNLSG 235
             G + L  I   + N T+  L    F +   E   P+        ++  ++L  +    
Sbjct: 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268

Query: 236 TIPSEVIGLSSLSIYLDLSQNQL 258
              +     S L   LDL+   L
Sbjct: 269 ISSNTFHCFSGLQ-ELDLTATHL 290

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 92.4 bits (230), Expect = 1e-21
 Identities = 55/303 (18%), Positives = 93/303 (30%), Gaps = 53/303 (17%)

Query: 6   FNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLR--ELMIGKNGFSGKVP 63
            N +  S+    GF    L+ L+   N         +S+        L +  N  +G  P
Sbjct: 138 SNHIS-SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEP 196

Query: 64  SLENLHKLQRVIISQNH---------------------LGNYGEKDNLEFVNSLVNASRL 102
              +    Q +                             +  ++D    V   +    +
Sbjct: 197 GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV 256

Query: 103 ELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFT 162
           E + +  + F  +       F + L  L +    L   +PSGL  L  L+ L LS N+F 
Sbjct: 257 ESINLQKHYFFNISSNTFHCF-SGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFE 314

Query: 163 SRIPGSIGDLQKLQMLGLNGNKFLGEIPS---------------------------SIGN 195
           +    S  +   L  L + GN    E+ +                            + N
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374

Query: 196 LTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQ 255
           L+ L +LN + N        +  +C  L +LDL    L             L   L+LS 
Sbjct: 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434

Query: 256 NQL 258
           + L
Sbjct: 435 SLL 437

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.9 bits (156), Expect = 7e-12
 Identities = 42/232 (18%), Positives = 78/232 (33%), Gaps = 33/232 (14%)

Query: 3   DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKV 62
           D  F +L+          L  L+ LNL+ +               L+ L           
Sbjct: 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHL----------- 454

Query: 63  PSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGN 122
                        +  NH      K N++  NSL    RLE+L +S  +   +   A  +
Sbjct: 455 ------------NLQGNHF----PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS 498

Query: 123 FSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNG 182
               +  + ++ N+L  +    L +L  +  L+L+ N  +  +P  +  L + + + L  
Sbjct: 499 L-KMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQ 556

Query: 183 NKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLS 234
           N        +  N+  L         LE +  +       L  + L +  LS
Sbjct: 557 NPLDC----TCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  100 bits (250), Expect = 2e-24
 Identities = 44/253 (17%), Positives = 90/253 (35%), Gaps = 24/253 (9%)

Query: 7   NQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLE 66
           + L+    + L  +  N++ L+L+GN  +      ++  + L  L +  N        LE
Sbjct: 20  SSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-TLDLE 77

Query: 67  NLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTR 126
           +L  L+ + ++ N++              L+    +E L  ++NN   +           
Sbjct: 78  SLSTLRTLDLNNNYV------------QELLVGPSIETLHAANNNISRVSCSRGQG---- 121

Query: 127 LGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTS-RIPGSIGDLQKLQMLGLNGNKF 185
              + +A N++             ++ LDL  N+  +            L+ L L  N  
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF- 180

Query: 186 LGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLS 245
           + ++   +     L TL+ + N L   +         +  + L NN L   I   +    
Sbjct: 181 IYDVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237

Query: 246 SLSIYLDLSQNQL 258
           +L  + DL  N  
Sbjct: 238 NLE-HFDLRGNGF 249

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 69.9 bits (171), Expect = 6e-14
 Identities = 35/178 (19%), Positives = 62/178 (34%), Gaps = 21/178 (11%)

Query: 98  NASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLS 157
           N +R ++ +++D++    L     +    +  L ++ N L     + L     LELL+LS
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSA-WNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 158 GNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPS-----------------SIGNLTLLM 200
            N         +  L  L+ L LN N  + E+                   S        
Sbjct: 67  SNVLYE--TLDLESLSTLRTLDLNNNY-VQELLVGPSIETLHAANNNISRVSCSRGQGKK 123

Query: 201 TLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
            +  A N +        G    +  LDL  N +     +E+   S    +L+L  N +
Sbjct: 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.1 bits (117), Expect = 6e-07
 Identities = 21/202 (10%), Positives = 53/202 (26%), Gaps = 7/202 (3%)

Query: 6   FNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSL 65
            N+L   +  +   +   +  ++L  N+    I  ++  + NL    +  NGF       
Sbjct: 200 SNKLA-FMGPEFQ-SAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRD 256

Query: 66  ENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFST 125
                 +   +++  +     ++  E   ++            D          +     
Sbjct: 257 FFSKNQRVQTVAKQTVKKLTGQNEEE--CTVPTLGHYGAYCCEDLP-APFADRLIALKRK 313

Query: 126 RLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKF 185
              +LS   ++    +     N      +D    Q+ + I       Q    L       
Sbjct: 314 EHALLSGQGSET-ERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKAL 372

Query: 186 LGEIPSSIGNLTLLMTLNFAEN 207
             ++ +       L        
Sbjct: 373 DEQVSNGRRAHAELDGTLQQAV 394

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 98.4 bits (246), Expect = 2e-24
 Identities = 58/251 (23%), Positives = 101/251 (40%), Gaps = 27/251 (10%)

Query: 21  LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNH 80
           L NL  L L  +  +   P  ++N + +  L +G N     +  L N+  L  + ++++ 
Sbjct: 109 LTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK 166

Query: 81  LGNYGEKDNL-------------EFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRL 127
           + +     NL             E ++ L + + L       N    +    V N  TRL
Sbjct: 167 VKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDI--TPVANM-TRL 223

Query: 128 GILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLG 187
             L +  N++     S L NL  L  L++  NQ +     ++ DL KL+ML +  N+   
Sbjct: 224 NSLKIGNNKI--TDLSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQI-- 277

Query: 188 EIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSL 247
              S + NL+ L +L    N L       +G   NL  L L  N+++   P  +  LS +
Sbjct: 278 SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKM 335

Query: 248 SIYLDLSQNQL 258
               D +   +
Sbjct: 336 D-SADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 94.1 bits (235), Expect = 9e-23
 Identities = 51/232 (21%), Positives = 94/232 (40%), Gaps = 23/232 (9%)

Query: 3   DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKV 62
           +   N    S  S L   +  L  L +  ++     P  I+N ++L  L +  N     +
Sbjct: 138 NLGANHNL-SDLSPLS-NMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED-I 192

Query: 63  PSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGN 122
             L +L  L       N + +         +  + N +RL  L+I +N    +    + N
Sbjct: 193 SPLASLTSLHYFTAYVNQITD---------ITPVANMTRLNSLKIGNNKITDL--SPLAN 241

Query: 123 FSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNG 182
             ++L  L +  NQ+  +  + +++L  L++L++  NQ +      + +L +L  L LN 
Sbjct: 242 L-SQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNN 296

Query: 183 NKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLS 234
           N+   E    IG LT L TL  ++N +    P  L     +   D  N  + 
Sbjct: 297 NQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 91.8 bits (229), Expect = 7e-22
 Identities = 62/238 (26%), Positives = 106/238 (44%), Gaps = 25/238 (10%)

Query: 21  LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNH 80
           L NLE LNL GNQ T   P  +SN   L  L IG N  +  + +L+NL  L+ + +++++
Sbjct: 65  LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISALQNLTNLRELYLNEDN 121

Query: 81  LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGN 140
           + +         ++ L N +++  L +  N+        + N  T L  L+V E+++   
Sbjct: 122 ISD---------ISPLANLTKMYSLNLGANHNLS-DLSPLSNM-TGLNYLTVTESKV--K 168

Query: 141 IPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLM 200
             + + NL +L  L L+ NQ     P  +  L  L       N+     P  + N+T L 
Sbjct: 169 DVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLN 224

Query: 201 TLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
           +L    N +    P  L     L  L++  N +S    + V  L+ L   L++  NQ+
Sbjct: 225 SLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLK-MLNVGSNQI 277

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 88.4 bits (220), Expect = 1e-20
 Identities = 49/251 (19%), Positives = 99/251 (39%), Gaps = 29/251 (11%)

Query: 21  LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNH 80
           L       L     T  +        ++ +L++     +  +  +E L  L+ + ++ N 
Sbjct: 21  LAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-SIQGIEYLTNLEYLNLNGNQ 77

Query: 81  LGNYGEKDNL-------------EFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRL 127
           + +     NL               +++L N + L  L ++++N   +    + N  T++
Sbjct: 78  ITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDI--SPLANL-TKM 134

Query: 128 GILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLG 187
             L++  N    ++ S L N+  L  L ++ ++     P  I +L  L  L LN N+   
Sbjct: 135 YSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED 191

Query: 188 EIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSL 247
             P  + +LT L       N +    P  +     L  L + NN ++   P     LS L
Sbjct: 192 ISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLA--NLSQL 245

Query: 248 SIYLDLSQNQL 258
           + +L++  NQ+
Sbjct: 246 T-WLEIGTNQI 255

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 74.5 bits (184), Expect = 9e-16
 Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 26/212 (12%)

Query: 60  GKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLV-------------NASRLELLQ 106
            ++    +L +  R ++ +  + +   ++ LE +  LV               + LE L 
Sbjct: 13  NQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLN 72

Query: 107 ISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIP 166
           ++ N    +    + N   +L  L +  N++     S L+NL NL  L L+ +  +   P
Sbjct: 73  LNGNQITDI--SPLSNL-VKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP 127

Query: 167 GSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVL 226
             + +L K+  L L  N       S + N+T L  L   E+ ++   P  +    +L  L
Sbjct: 128 --LANLTKMYSLNLGANH-NLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSL 182

Query: 227 DLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
            L  N +    P  +  L+SL  Y     NQ+
Sbjct: 183 SLNYNQIEDISP--LASLTSLH-YFTAYVNQI 211

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 94.2 bits (234), Expect = 4e-22
 Identities = 67/265 (25%), Positives = 100/265 (37%), Gaps = 44/265 (16%)

Query: 3   DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKV 62
             P N L  SLP+        L  L ++GNQ T  +PV       L              
Sbjct: 67  VIPDNNLT-SLPALPP----ELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPLTHLPALP 120

Query: 63  PSLENLHKLQRVIISQNHLGNY-GEKDNLEFVNSLVNA--------SRLELLQISDNNFG 113
             L  L       I  N L +       L+ ++   N         S L  L   +N   
Sbjct: 121 SGLCKLW------IFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQL- 173

Query: 114 GMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQ 173
             LP         L  LSV++NQL  ++P+    L  L   +   N+ TS +P     L+
Sbjct: 174 TSLPMLPSG----LQELSVSDNQL-ASLPTLPSELYKLWAYN---NRLTS-LPALPSGLK 224

Query: 174 KLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNL 233
           +L    ++GN+ L  +P     L     L  + N L  S+P        L+ L +Y N L
Sbjct: 225 ELI---VSGNR-LTSLPVLPSELK---ELMVSGNRLT-SLPMLPS---GLLSLSVYRNQL 273

Query: 234 SGTIPSEVIGLSSLSIYLDLSQNQL 258
           +  +P  +I LSS +  ++L  N L
Sbjct: 274 T-RLPESLIHLSSET-TVNLEGNPL 296

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 70.3 bits (172), Expect = 5e-14
 Identities = 59/281 (20%), Positives = 92/281 (32%), Gaps = 51/281 (18%)

Query: 3   DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKV 62
           +   NQL  SLP      L  L   +              +  S L +L I  N  +   
Sbjct: 87  EVSGNQLT-SLPVLPP-GLLELSIFSNPLTHLP-------ALPSGLCKLWIFGNQLTSLP 137

Query: 63  PSLENLHKLQRVIISQNHLGNY-GEKDNLEFVNSLVNA--------SRLELLQISDNNFG 113
                L +L    +S N L +       L  + +  N         S L+ L +SDN   
Sbjct: 138 VLPPGLQELS---VSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLA 194

Query: 114 GMLPEAVGNFSTRLGILSVAENQL--FGNIPSGLRNLV--------------NLELLDLS 157
             LP         L  L    N+L     +PSGL+ L+               L+ L +S
Sbjct: 195 -SLPTLPSE----LYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVS 249

Query: 158 GNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSL 217
           GN+ TS +P     L  L    +  N+ L  +P S+ +L+   T+N   N L        
Sbjct: 250 GNRLTS-LPMLPSGLLSLS---VYRNQ-LTRLPESLIHLSSETTVNLEGNPLSERTLQ-- 302

Query: 218 GKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
              + +     Y+  +              +  L L+    
Sbjct: 303 -ALREITSAPGYSGPII-RFDMAGASAPRETRALHLAAADW 341

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 70.3 bits (172), Expect = 6e-14
 Identities = 40/175 (22%), Positives = 68/175 (38%), Gaps = 37/175 (21%)

Query: 100 SRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGN 159
           +   +L + ++     LP+ +      +  L + +N L  ++P+    L  L   ++SGN
Sbjct: 40  NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNL-TSLPALPPELRTL---EVSGN 91

Query: 160 QFTSRIPGSIGDLQKLQMLGLNGNKF----------------LGEIPSSIGNLTLLMTLN 203
           Q TS +P     L +L +                        L  +P     L     L+
Sbjct: 92  QLTS-LPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQ---ELS 147

Query: 204 FAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
            ++N L  S+P+       L  L  YNN L+ ++P    GL      L +S NQL
Sbjct: 148 VSDNQLA-SLPALPS---ELCKLWAYNNQLT-SLPMLPSGLQE----LSVSDNQL 193

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 62.2 bits (151), Expect = 3e-11
 Identities = 52/237 (21%), Positives = 78/237 (32%), Gaps = 36/237 (15%)

Query: 7   NQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLE 66
           NQL  SLP         L+ L+++ NQ    +P   S    L +L    N  +       
Sbjct: 171 NQLT-SLPMLPS----GLQELSVSDNQLAS-LPTLPSE---LYKLWAYNNRLTSLPALPS 221

Query: 67  NLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTR 126
            L +L   I+S N L +                S L+ L +S N     LP         
Sbjct: 222 GLKEL---IVSGNRLTSLPV-----------LPSELKELMVSGNRLT-SLPMLPSG---- 262

Query: 127 LGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLN---GN 183
           L  LSV  NQL   +P  L +L +   ++L GN  + R   ++ ++             +
Sbjct: 263 LLSLSVYRNQL-TRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFD 321

Query: 184 KFLGEIPSSIGNLTLLMTLNFAENMLEGSIP----SSLGKCQNLIVLDLYNNNLSGT 236
                 P     L L               P       G+  N     L+ + LS T
Sbjct: 322 MAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSET 378

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 92.5 bits (230), Expect = 1e-21
 Identities = 55/252 (21%), Positives = 89/252 (35%), Gaps = 21/252 (8%)

Query: 12  SLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS--LENLH 69
           ++P  +         L+L  N+         ++  +L EL + +N  S  V      NL 
Sbjct: 25  AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLF 80

Query: 70  KLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGI 129
            L+ + +  N L                  S L  L IS+N    +L     +    L  
Sbjct: 81  NLRTLGLRSNRLKLIPL-------GVFTGLSNLTKLDISENKIVILLDYMFQDL-YNLKS 132

Query: 130 LSVAENQLFGNIPSG-LRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGE 188
           L V +N L   I       L +LE L L     TS    ++  L  L +L L     +  
Sbjct: 133 LEVGDNDL-VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN-INA 190

Query: 189 IPSSI-GNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVI-GLSS 246
           I       L  L  L  +      ++  +     NL  L + + NL+  +P   +  L  
Sbjct: 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVY 249

Query: 247 LSIYLDLSQNQL 258
           L  +L+LS N +
Sbjct: 250 LR-FLNLSYNPI 260

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 89.4 bits (222), Expect = 2e-20
 Identities = 50/255 (19%), Positives = 100/255 (39%), Gaps = 15/255 (5%)

Query: 7   NQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSG-KVPSL 65
           N+L+  +P  +   L NL  L+++ N+    +     +  NL+ L +G N        + 
Sbjct: 90  NRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF 148

Query: 66  ENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFST 125
             L+ L+++ + + +L +           +L +   L +L++   N    + +       
Sbjct: 149 SGLNSLEQLTLEKCNLTSIPT-------EALSHLHGLIVLRLRHLNIN-AIRDYSFKRLY 200

Query: 126 RLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKF 185
           RL +L ++       +       +NL  L ++    T+    ++  L  L+ L L+ N  
Sbjct: 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP- 259

Query: 186 LGEIPSSI-GNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVI-G 243
           +  I  S+   L  L  +      L    P +      L VL++  N L+ T+   V   
Sbjct: 260 ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHS 318

Query: 244 LSSLSIYLDLSQNQL 258
           + +L   L L  N L
Sbjct: 319 VGNLE-TLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 81.7 bits (202), Expect = 6e-18
 Identities = 54/232 (23%), Positives = 95/232 (40%), Gaps = 16/232 (6%)

Query: 7   NQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVP--S 64
           N++   L   +   L NL+ L +  N        + S  ++L +L + K   +  +P  +
Sbjct: 114 NKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEA 171

Query: 65  LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFS 124
           L +LH L  + +   ++    +        S     RL++L+IS   +   +      + 
Sbjct: 172 LSHLHGLIVLRLRHLNINAIRD-------YSFKRLYRLKVLEISHWPYLDTMTPNC-LYG 223

Query: 125 TRLGILSVAENQLFGNIPSG-LRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGN 183
             L  LS+    L   +P   +R+LV L  L+LS N  ++     + +L +LQ + L G 
Sbjct: 224 LNLTSLSITHCNL-TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG 282

Query: 184 KFLGEIPSSI-GNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLS 234
           + L  +       L  L  LN + N L     S      NL  L L +N L+
Sbjct: 283 Q-LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 89.3 bits (222), Expect = 8e-21
 Identities = 56/264 (21%), Positives = 98/264 (37%), Gaps = 25/264 (9%)

Query: 6   FNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS- 64
           FN ++  LP  +   +P L  L L  N  +        N   L  L +  N    ++   
Sbjct: 102 FNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDD 159

Query: 65  -LENLHKLQRVIISQNHLGN--YGEKDNLEFVN-------SLVNASRLELLQISDNNFGG 114
             +    LQ + +S N L +       +L   N       +L     +E L  S N+   
Sbjct: 160 TFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN- 218

Query: 115 MLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQK 174
           ++       +  L IL +  N L     + L N   L  +DLS N+    +      +Q+
Sbjct: 219 VVRG---PVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 273

Query: 175 LQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLS 234
           L+ L ++ N+ L  +      +  L  L+ + N L   +  +  +   L  L L +N++ 
Sbjct: 274 LERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331

Query: 235 GTIPSEVIGLSSLSIYLDLSQNQL 258
            T+        +L   L LS N  
Sbjct: 332 -TLKLST--HHTLK-NLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 77.4 bits (191), Expect = 1e-16
 Identities = 45/254 (17%), Positives = 93/254 (36%), Gaps = 25/254 (9%)

Query: 7   NQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSG-KVPSL 65
            Q Q         TL N + +    +         + +   +  L +           + 
Sbjct: 30  MQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAF 89

Query: 66  ENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFST 125
              H +Q++ +  N +            +   N   L +L +  N+    LP  + + + 
Sbjct: 90  AYAHTIQKLYMGFNAIRYLPP-------HVFQNVPLLTVLVLERNDL-SSLPRGIFHNTP 141

Query: 126 RLGILSVAENQLFGNIPSG-LRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNK 184
           +L  LS++ N L   I     +   +L+ L LS N+ T  +   +  +  L    ++ N 
Sbjct: 142 KLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLFHANVSYNL 197

Query: 185 FLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGL 244
                 S++     +  L+ + N +   +   +     L +L L +NNL  T  + ++  
Sbjct: 198 L-----STLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNL--TDTAWLLNY 247

Query: 245 SSLSIYLDLSQNQL 258
             L + +DLS N+L
Sbjct: 248 PGL-VEVDLSYNEL 260

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 74.3 bits (183), Expect = 1e-15
 Identities = 45/239 (18%), Positives = 86/239 (35%), Gaps = 24/239 (10%)

Query: 7   NQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLE 66
           N L  SLP  +    P L  L+++ N        +    ++L+ L +  N  +  V  L 
Sbjct: 127 NDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD-LS 183

Query: 67  NLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNA---------SRLELLQISDNNFGGMLP 117
            +  L    +S N L        +E +++  N+           L +L++  NN      
Sbjct: 184 LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNL----- 238

Query: 118 EAVGNFS--TRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKL 175
                      L  + ++ N+L   +      +  LE L +S N+  + +      +  L
Sbjct: 239 TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTL 297

Query: 176 QMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLS 234
           ++L L+ N  L  +  +      L  L    N +  ++  S      L  L L +N+  
Sbjct: 298 KVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIV-TLKLST--HHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 73.9 bits (182), Expect = 2e-15
 Identities = 45/258 (17%), Positives = 91/258 (35%), Gaps = 26/258 (10%)

Query: 4   FPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVP 63
            P       + S+L         +++                +N + +    +    K+P
Sbjct: 4   KPRQPEYKCIDSNL-QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLP 61

Query: 64  S--LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVG 121
           +  L++  +++ + ++   +             +   A  ++ L +  N     LP  V 
Sbjct: 62  AALLDSFRQVELLNLNDLQIEEIDT-------YAFAYAHTIQKLYMGFNAI-RYLPPHVF 113

Query: 122 NFSTRLGILSVAENQLFGNIPSGL-RNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGL 180
                L +L +  N L  ++P G+  N   L  L +S N        +      LQ L L
Sbjct: 114 QNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 172

Query: 181 NGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSE 240
           + N+ L  +   +  +  L   N + N+L     S+L     +  LD  +N+++  +   
Sbjct: 173 SSNR-LTHVD--LSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGP 223

Query: 241 VIGLSSLSIYLDLSQNQL 258
           V     L+  L L  N L
Sbjct: 224 V--NVELT-ILKLQHNNL 238

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 87.7 bits (218), Expect = 5e-20
 Identities = 56/238 (23%), Positives = 92/238 (38%), Gaps = 23/238 (9%)

Query: 21  LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNH 80
           L NLE L    NQ +   P  +   +NL EL +  N     + +L +L  L  + ++ N 
Sbjct: 198 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-DIGTLASLTNLTDLDLANN- 253

Query: 81  LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGN 140
                    +  +  L   ++L  L++  N    +    +    T L  L + ENQL   
Sbjct: 254 --------QISNLAPLSGLTKLTELKLGANQISNI--SPLAGL-TALTNLELNENQLED- 301

Query: 141 IPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLM 200
             S + NL NL  L L  N  +   P  +  L KLQ L    NK      SS+ NLT + 
Sbjct: 302 -ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV--SDVSSLANLTNIN 356

Query: 201 TLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
            L+   N +    P  L     +  L L +   +    +    +S  +   +++   +
Sbjct: 357 WLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI 412

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 84.6 bits (210), Expect = 5e-19
 Identities = 65/238 (27%), Positives = 99/238 (41%), Gaps = 27/238 (11%)

Query: 21  LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNH 80
           L NL  +N + NQ T   P  + N + L ++++  N  +  +  L NL  L  + +  N 
Sbjct: 67  LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-ITPLANLTNLTGLTLFNNQ 123

Query: 81  LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGN 140
           + +         ++ L N + L  L++S N        A+    T L  LS         
Sbjct: 124 ITD---------IDPLKNLTNLNRLELSSNTISD--ISALSGL-TSLQQLSFGNQVTD-- 169

Query: 141 IPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLM 200
               L NL  LE LD+S N+ +      +  L  L+ L    N+     P  +G LT L 
Sbjct: 170 -LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLD 224

Query: 201 TLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
            L+   N L+     +L    NL  LDL NN +S   P  + GL+ L   L L  NQ+
Sbjct: 225 ELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKL-TELKLGANQI 277

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 80.0 bits (198), Expect = 2e-17
 Identities = 57/238 (23%), Positives = 92/238 (38%), Gaps = 27/238 (11%)

Query: 21  LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNH 80
           L       L     T  +    ++   +  L   + G    +  +E L+ L ++  S N 
Sbjct: 23  LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SIDGVEYLNNLTQINFSNNQ 79

Query: 81  LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGN 140
           L       ++  + +L     L  + +++N         + N  T L  L++  NQ+   
Sbjct: 80  L------TDITPLKNLTK---LVDILMNNNQIAD--ITPLANL-TNLTGLTLFNNQI--T 125

Query: 141 IPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLM 200
               L+NL NL  L+LS N  +     ++  L  LQ L              + NLT L 
Sbjct: 126 DIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQV---TDLKPLANLTTLE 180

Query: 201 TLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
            L+ + N +  S  S L K  NL  L   NN +S   P     L++L   L L+ NQL
Sbjct: 181 RLDISSNKV--SDISVLAKLTNLESLIATNNQISDITPLG--ILTNLD-ELSLNGNQL 233

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 77.3 bits (191), Expect = 2e-16
 Identities = 55/216 (25%), Positives = 92/216 (42%), Gaps = 21/216 (9%)

Query: 21  LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNH 80
           L NL  L+LA NQ +   P  +S  + L EL +G N  S  +  L  L  L  + +++N 
Sbjct: 242 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NISPLAGLTALTNLELNEN- 297

Query: 81  LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGN 140
                    LE ++ + N   L  L +  NN   + P  V +  T+L  L    N++  +
Sbjct: 298 --------QLEDISPISNLKNLTYLTLYFNNISDISP--VSSL-TKLQRLFFYNNKV--S 344

Query: 141 IPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLM 200
             S L NL N+  L    NQ +   P  + +L ++  LGLN   +     +   N+++  
Sbjct: 345 DVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPN 402

Query: 201 TLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGT 236
           T+      L    P+++    +    D+  N  S T
Sbjct: 403 TVKNVTGAL--IAPATISDGGSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 73.5 bits (181), Expect = 4e-15
 Identities = 49/218 (22%), Positives = 90/218 (41%), Gaps = 25/218 (11%)

Query: 41  SISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNAS 100
           + +  +   + ++GK   +    S  +L ++  +   +  +       +++ V  L N  
Sbjct: 19  TDTALAEKMKTVLGKTNVTD-TVSQTDLDQVTTLQADRLGIK------SIDGVEYLNN-- 69

Query: 101 RLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQ 160
            L  +  S+N    +    + N  T+L  + +  NQ+     + L NL NL  L L  NQ
Sbjct: 70  -LTQINFSNNQLTDI--TPLKNL-TKLVDILMNNNQI--ADITPLANLTNLTGLTLFNNQ 123

Query: 161 FTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKC 220
            T   P  + +L  L  L L+ N       S++  LT L  L+F   + +      L   
Sbjct: 124 ITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTD---LKPLANL 176

Query: 221 QNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
             L  LD+ +N +S    S +  L++L   L  + NQ+
Sbjct: 177 TTLERLDISSNKVSD--ISVLAKLTNLE-SLIATNNQI 211

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 27/133 (20%), Positives = 49/133 (36%), Gaps = 10/133 (7%)

Query: 126 RLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKF 185
            LG  ++ ++     I      L       L     T  +     DL ++  L  +    
Sbjct: 2   PLGSATITQDTPINQI-FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI 58

Query: 186 LGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLS 245
             +    +  L  L  +NF+ N L    P  L     L+ + + NN ++   P  +  L+
Sbjct: 59  --KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLT 112

Query: 246 SLSIYLDLSQNQL 258
           +L+  L L  NQ+
Sbjct: 113 NLT-GLTLFNNQI 124

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.9 bits (125), Expect = 6e-08
 Identities = 32/173 (18%), Positives = 61/173 (35%), Gaps = 16/173 (9%)

Query: 21  LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNH 80
           L NL  L L  N  +   P  +S+ + L+ L    N  S  V SL NL  +  +    N 
Sbjct: 308 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD-VSSLANLTNINWLSAGHNQ 364

Query: 81  LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGN 140
           + +         +  L N +R+  L ++D  +         N S    + +V    +   
Sbjct: 365 ISD---------LTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--- 412

Query: 141 IPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSI 193
            P+ + +  +    D++ N  +           +   +G     F G +   +
Sbjct: 413 APATISDGGSYTEPDITWNLPSY-TNEVSYTFSQPVTIGKGTTTFSGTVTQPL 464

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 87.5 bits (217), Expect = 6e-20
 Identities = 53/231 (22%), Positives = 92/231 (39%), Gaps = 15/231 (6%)

Query: 6   FNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS- 64
            N +Q  + +D    L +LE L L  N        + +  ++L  L +  N  +  +PS 
Sbjct: 84  ENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSG 141

Query: 65  -LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNF 123
             E L KL+ + +  N + +           +      L  L + +      + E     
Sbjct: 142 AFEYLSKLRELWLRNNPIESIPS-------YAFNRVPSLMRLDLGELKKLEYISEGAFEG 194

Query: 124 STRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGN 183
              L  L++    +  ++P+ L  LV LE L++SGN F    PGS   L  L+ L +  +
Sbjct: 195 LFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252

Query: 184 KFLGEIPS-SIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNL 233
           + +  I   +   L  L+ LN A N L           + L+ L L++N  
Sbjct: 253 Q-VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 81.3 bits (201), Expect = 8e-18
 Identities = 55/252 (21%), Positives = 95/252 (37%), Gaps = 22/252 (8%)

Query: 12  SLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVP--SLENLH 69
            +P  +     N   LNL  N        +  +  +L  L +G+N    ++   +   L 
Sbjct: 68  EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLA 123

Query: 70  KLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGI 129
            L  + +  N L             +    S+L  L + +N     +P    N    L  
Sbjct: 124 SLNTLELFDNWLTVIPS-------GAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMR 175

Query: 130 LSVAENQLFGNIPSG-LRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGE 188
           L + E +    I  G    L NL+ L+L        +P ++  L  L+ L ++GN    E
Sbjct: 176 LDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNH-FPE 232

Query: 189 IPS-SIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVI-GLSS 246
           I   S   L+ L  L    + +     ++     +L+ L+L +NNLS ++P ++   L  
Sbjct: 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRY 291

Query: 247 LSIYLDLSQNQL 258
           L   L L  N  
Sbjct: 292 LV-ELHLHHNPW 302

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 86.3 bits (214), Expect = 1e-19
 Identities = 54/234 (23%), Positives = 95/234 (40%), Gaps = 15/234 (6%)

Query: 3   DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKV 62
           +   NQ+Q  +  +    L +LE L L+ N        + +  +NL  L +  N  +  +
Sbjct: 70  NLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TI 127

Query: 63  PS--LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAV 120
           P+     L KL+ + +  N + +           +      L  L + +      + E  
Sbjct: 128 PNGAFVYLSKLKELWLRNNPIESIPS-------YAFNRIPSLRRLDLGELKRLSYISEGA 180

Query: 121 GNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGL 180
               + L  L++A   L   IP+ L  L+ L+ LDLSGN  ++  PGS   L  LQ L +
Sbjct: 181 FEGLSNLRYLNLAMCNL-REIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM 238

Query: 181 NGNKFLGEIPS-SIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNL 233
             ++ +  I   +  NL  L+ +N A N L            +L  + L++N  
Sbjct: 239 IQSQ-IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 74.4 bits (183), Expect = 2e-15
 Identities = 55/241 (22%), Positives = 94/241 (39%), Gaps = 20/241 (8%)

Query: 22  PNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSG-KVPSLENLHKLQRVIISQNH 80
                +          +P  IS  +N R L + +N     KV S ++L  L+ + +S+NH
Sbjct: 43  NQFSKVICVRKNLRE-VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 81  LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGN 140
           +             +    + L  L++ DN    +   A     ++L  L +  N +  +
Sbjct: 100 IRTIEI-------GAFNGLANLNTLELFDNRLTTIPNGAFVYL-SKLKELWLRNNPI-ES 150

Query: 141 IPSGL-RNLVNLELLDLSG-NQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTL 198
           IPS     + +L  LDL    + +    G+   L  L+ L L     L EIP+ +  L  
Sbjct: 151 IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN-LTPLIK 208

Query: 199 LMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVI-GLSSLSIYLDLSQNQ 257
           L  L+ + N L    P S     +L  L +  + +   I       L SL   ++L+ N 
Sbjct: 209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLV-EINLAHNN 266

Query: 258 L 258
           L
Sbjct: 267 L 267

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 6/118 (5%)

Query: 142 PSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMT 201
           PS          +          +P  I      ++L L+ N+      +S  +L  L  
Sbjct: 36  PSVCSCSNQFSKVICVRKNLRE-VPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEI 92

Query: 202 LNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEV-IGLSSLSIYLDLSQNQL 258
           L  + N +      +     NL  L+L++N L+ TIP+   + LS L   L L  N +
Sbjct: 93  LQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLK-ELWLRNNPI 148

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 86.3 bits (214), Expect = 2e-19
 Identities = 57/259 (22%), Positives = 90/259 (34%), Gaps = 17/259 (6%)

Query: 2   FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGK 61
           F      ++        F   +LE +N    QF            +L+ L    N     
Sbjct: 287 FSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT------LKLKSLKRLTFTSNKGG-N 339

Query: 62  VPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVG 121
             S  +L  L+ + +S+N L   G         S    + L+ L +S N    M    +G
Sbjct: 340 AFSEVDLPSLEFLDLSRNGLSFKGCCSQ-----SDFGTTSLKYLDLSFNGVITMSSNFLG 394

Query: 122 NFSTRLGILSVAENQLFGNIPSG-LRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGL 180
               +L  L    + L          +L NL  LD+S         G    L  L++L +
Sbjct: 395 --LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452

Query: 181 NGNKFLGEIPSSI-GNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPS 239
            GN F       I   L  L  L+ ++  LE   P++     +L VL++ +N L      
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512

Query: 240 EVIGLSSLSIYLDLSQNQL 258
               L+SL   + L  N  
Sbjct: 513 IFDRLTSLQ-KIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 80.1 bits (198), Expect = 2e-17
 Identities = 47/223 (21%), Positives = 85/223 (38%), Gaps = 14/223 (6%)

Query: 21  LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGK---VPSLENLHKLQRVIIS 77
           L +L+ L    N+       S  +  +L  L + +NG S K     S      L+ + +S
Sbjct: 324 LKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 78  QNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQL 137
            N +        +   ++ +   +LE L    +N   M   +V      L  L ++    
Sbjct: 382 FNGV--------ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 138 FGNIPSGLRNLVNLELLDLSGNQFTSRI-PGSIGDLQKLQMLGLNGNKFLGEIPSSIGNL 196
                     L +LE+L ++GN F     P    +L+ L  L L+  +     P++  +L
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493

Query: 197 TLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPS 239
           + L  LN A N L+        +  +L  + L+ N    + P 
Sbjct: 494 SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 75.1 bits (185), Expect = 1e-15
 Identities = 51/260 (19%), Positives = 86/260 (33%), Gaps = 40/260 (15%)

Query: 1   DFDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSG 60
           +F   +         DL   L N+   +L           S       + L +    F  
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLELVNCKFGQ 318

Query: 61  KVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAV 120
             P+L  L  L+R+  + N  GN           S V+   LE L +S N          
Sbjct: 319 -FPTL-KLKSLKRLTFTSNKGGN---------AFSEVDLPSLEFLDLSRNGL-------- 359

Query: 121 GNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGL 180
                             G          +L+ LDLS N   + +  +   L++L+ L  
Sbjct: 360 ---------------SFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDF 403

Query: 181 NGNKFLGEIPSSI-GNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPS 239
             +        S+  +L  L+ L+ +      +         +L VL +  N+       
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463

Query: 240 EVI-GLSSLSIYLDLSQNQL 258
           ++   L +L+ +LDLSQ QL
Sbjct: 464 DIFTELRNLT-FLDLSQCQL 482

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 74.8 bits (184), Expect = 1e-15
 Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 2/138 (1%)

Query: 122 NFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLN 181
           N       L ++ N L         +   L++LDLS  +  +   G+   L  L  L L 
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 182 GNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNL-SGTIPSE 240
           GN        +   L+ L  L   E  L       +G  + L  L++ +N + S  +P  
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 241 VIGLSSLSIYLDLSQNQL 258
              L++L  +LDLS N++
Sbjct: 145 FSNLTNLE-HLDLSSNKI 161

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 73.6 bits (181), Expect = 3e-15
 Identities = 47/216 (21%), Positives = 77/216 (35%), Gaps = 13/216 (6%)

Query: 3   DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFT--GPIPVSISNASNLRELMIGKNGFSG 60
            F  N+   +        LP+LE L+L+ N  +  G    S    ++L+ L +  NG   
Sbjct: 331 TFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387

Query: 61  KVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAV 120
              +   L +L+ +    ++L        +   +  ++   L  L IS  +         
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNL------KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 121 GNFSTRLGILSVAENQLFGNIPSG-LRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLG 179
               + L +L +A N    N        L NL  LDLS  Q     P +   L  LQ+L 
Sbjct: 442 NGL-SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500

Query: 180 LNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPS 215
           +  N+           LT L  +    N  + S P 
Sbjct: 501 MASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 73.6 bits (181), Expect = 4e-15
 Identities = 51/261 (19%), Positives = 88/261 (33%), Gaps = 22/261 (8%)

Query: 7   NQLQGSLPSDLGFTLPNLEGLNLAG------NQFTGPIPVSISNASNLRELMIGKNGFSG 60
           N    ++       L  LE   L                 ++    NL            
Sbjct: 210 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269

Query: 61  KVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAV 120
            +  + +L      + S + +        +E V         + L++ +  FG      +
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSV-----TIERVKDFSYNFGWQHLELVNCKFGQFPTLKL 324

Query: 121 GNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFT--SRIPGSIGDLQKLQML 178
            +       L+   N+  GN  S + +L +LE LDLS N  +       S      L+ L
Sbjct: 325 KSLKR----LTFTSNKG-GNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378

Query: 179 GLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSS-LGKCQNLIVLDLYNNNLSGTI 237
            L+ N  +  + S+   L  L  L+F  + L+     S     +NLI LD+ + +     
Sbjct: 379 DLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437

Query: 238 PSEVIGLSSLSIYLDLSQNQL 258
                GLSSL   L ++ N  
Sbjct: 438 NGIFNGLSSLE-VLKMAGNSF 457

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 72.4 bits (178), Expect = 8e-15
 Identities = 48/249 (19%), Positives = 89/249 (35%), Gaps = 34/249 (13%)

Query: 12  SLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSG-KVPSLENLHK 70
            +P +L     + + L+L+ N        S  +   L+ L + +      +  + ++L  
Sbjct: 21  KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH 77

Query: 71  LQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGIL 130
           L  +I++ N + +           +    S L+ L   + N   +    +G+    L  L
Sbjct: 78  LSTLILTGNPIQSLAL-------GAFSGLSSLQKLVAVETNLASLENFPIGH-LKTLKEL 129

Query: 131 SVAENQL-FGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEI 189
           +VA N +    +P    NL NLE LDLS N+  S     +  L ++ +            
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL------------ 177

Query: 190 PSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSI 249
                   L ++L+ + N +   I     K   L  L L NN  S  +    I   +   
Sbjct: 178 --------LNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLE 228

Query: 250 YLDLSQNQL 258
              L   + 
Sbjct: 229 VHRLVLGEF 237

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 85.9 bits (213), Expect = 2e-19
 Identities = 43/268 (16%), Positives = 95/268 (35%), Gaps = 19/268 (7%)

Query: 7   NQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNG----FSGKV 62
             L+      L  ++ ++  L L  ++    + +     S++R L +            +
Sbjct: 158 LSLRNYQSQSLK-SIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPL 216

Query: 63  PSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGN 122
           P  E    ++++    + L +    + L+ +  ++  S +E    + N  G   P     
Sbjct: 217 PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDV 276

Query: 123 FS-------TRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKL 175
            S         +  L + +  LF ++ +    L  ++ + +  ++           L+ L
Sbjct: 277 VSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSL 336

Query: 176 QMLGLNGNKFLGEI---PSSIGNLTLLMTLNFAENMLE--GSIPSSLGKCQNLIVLDLYN 230
           + L L+ N  + E     +  G    L TL  ++N L         L   +NL  LD+  
Sbjct: 337 EFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISR 396

Query: 231 NNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
           N     +P        +  +L+LS   +
Sbjct: 397 NTFH-PMPDSCQWPEKM-RFLNLSSTGI 422

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 77.8 bits (192), Expect = 1e-16
 Identities = 43/257 (16%), Positives = 91/257 (35%), Gaps = 20/257 (7%)

Query: 6   FNQLQGSLPSDLGF-TLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSG-KVP 63
           FN  +  + S+LG      +  L++        +    S    ++ + +  +        
Sbjct: 269 FNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCS 328

Query: 64  SLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNF 123
             ++L  L+ + +S+N +     K++            L+ L +S N+    + +     
Sbjct: 329 FSQHLKSLEFLDLSENLMVEEYLKNSACKGAW----PSLQTLVLSQNHLR-SMQKTGEIL 383

Query: 124 S--TRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLN 181
                L  L ++ N     +P   +    +  L+LS       +   I   Q L++L ++
Sbjct: 384 LTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVS 439

Query: 182 GNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEV 241
            N  L      +  L     L  + N L+ ++P +      L+V+ +  N L        
Sbjct: 440 NNN-LDSFSLFLPRLQ---ELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIF 493

Query: 242 IGLSSLSIYLDLSQNQL 258
             L+SL   + L  N  
Sbjct: 494 DRLTSLQ-KIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 75.5 bits (186), Expect = 7e-16
 Identities = 43/250 (17%), Positives = 92/250 (36%), Gaps = 13/250 (5%)

Query: 12  SLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSG-KVPSLENLHK 70
           S+PS L      ++ L+L+ N+ T      +   +NL+ L++  +  +  +  +  +L  
Sbjct: 19  SIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS 75

Query: 71  LQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGIL 130
           L+ + +S NHL +          +     S L+ L +  N +  +   ++    T L  L
Sbjct: 76  LEHLDLSDNHLSSLSS-------SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128

Query: 131 SVAENQLFGNIPSG-LRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEI 189
            +   + F  I       L +L  L++      +    S+  ++ +  L L+ ++    +
Sbjct: 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLL 188

Query: 190 PSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSL-S 248
                 L+ +  L   +  L     S L   +    +       S         L  L  
Sbjct: 189 EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLR 248

Query: 249 IYLDLSQNQL 258
             L+LS+ + 
Sbjct: 249 YILELSEVEF 258

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 75.5 bits (186), Expect = 8e-16
 Identities = 48/265 (18%), Positives = 88/265 (33%), Gaps = 25/265 (9%)

Query: 12  SLPSDLGFTLPNLEGLNLAGNQ--------FTGPIPVSISNASNLRELMIGKNGFSGKVP 63
            L       L ++  L L                   S       R  ++    F+  + 
Sbjct: 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK 245

Query: 64  SLENLHKLQRVIISQNHLGNYGEKDNLEFVN----SLVNASRLELLQISDNNFGGMLPEA 119
            L  + +L  V      L   G+ +  E         V    +  L I        L   
Sbjct: 246 LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTV 305

Query: 120 VGNFSTRLGILSVAENQLFGNIPSG-LRNLVNLELLDLSGNQFTSRI---PGSIGDLQKL 175
                 ++  ++V  +++F  +P    ++L +LE LDLS N             G    L
Sbjct: 306 YSLL-EKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL 363

Query: 176 QMLGLNGNKF--LGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNL 233
           Q L L+ N    + +    +  L  L +L+ + N     +P S    + +  L+L +  +
Sbjct: 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI 422

Query: 234 SGTIPSEVIGLSSLSIYLDLSQNQL 258
              + + +    +L   LD+S N L
Sbjct: 423 R-VVKTCI--PQTLE-VLDVSNNNL 443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 70.5 bits (173), Expect = 5e-14
 Identities = 44/235 (18%), Positives = 88/235 (37%), Gaps = 21/235 (8%)

Query: 3   DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKV 62
             P   L     S +   L  ++ + +  ++          +  +L  L + +N    + 
Sbjct: 292 HIPQFYLF-YDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEY 350

Query: 63  P----SLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPE 118
                       LQ +++SQNHL +  +   +     L+    L  L IS N F  M   
Sbjct: 351 LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI-----LLTLKNLTSLDISRNTFHPMPDS 405

Query: 119 AVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQML 178
                  ++  L+++   +   + + +     LE+LD+S N   S        L +LQ L
Sbjct: 406 CQW--PEKMRFLNLSSTGI-RVVKTCI--PQTLEVLDVSNNNLDS-FSL---FLPRLQEL 456

Query: 179 GLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNL 233
            ++ NK L  +P +     +L+ +  + N L+        +  +L  + L+ N  
Sbjct: 457 YISRNK-LKTLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 69.0 bits (169), Expect = 1e-13
 Identities = 44/275 (16%), Positives = 83/275 (30%), Gaps = 27/275 (9%)

Query: 3   DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKV 62
           D  FN++      DL     NL+ L L  ++       +  +  +L  L +  N  S  +
Sbjct: 32  DLSFNKITYIGHGDLRA-CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SL 89

Query: 63  PS--LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAV 120
            S     L  L+ + +  N          L   +   N + L+ L+I +      +    
Sbjct: 90  SSSWFGPLSSLKYLNLMGNPY------QTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID 143

Query: 121 GNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGL 180
               T L  L +    L       L+++ ++  L L  ++    +      L  ++ L L
Sbjct: 144 FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203

Query: 181 NGNKFLGEIPSSIGNLTLLMTLNFAENMLEG----------SIPSSLGKCQNLIVLDLYN 230
                     S +    +   +                    +   + +   +   D   
Sbjct: 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263

Query: 231 NNLSGTIPSEVIGLSSLSI-------YLDLSQNQL 258
           N L    PSE   +S L          L + Q  L
Sbjct: 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL 298

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 86.0 bits (213), Expect = 3e-19
 Identities = 57/280 (20%), Positives = 101/280 (36%), Gaps = 31/280 (11%)

Query: 3   DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKV 62
           +        ++  +    LPNL  L+L  ++     P +     +L EL +   G S  V
Sbjct: 54  ELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV 113

Query: 63  PS---LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEA 119
                  NL  L R+ +S+N +       +L    S    + L+ +  S N    +    
Sbjct: 114 LKDGYFRNLKALTRLDLSKNQI------RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE 167

Query: 120 VGNFSTR-LGILSVAENQLFGNIPSGLRNLVN------LELLDLSGNQFTSRIPG----- 167
           +     + L   S+A N L+  +       +N      LE+LD+SGN +T  I G     
Sbjct: 168 LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA 227

Query: 168 -------SIGDLQKLQMLGLNGNKFLGEIPSSIGNLTL--LMTLNFAENMLEGSIPSSLG 218
                  S+     +   G   +       ++   L    +  L+ +   +         
Sbjct: 228 ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE 287

Query: 219 KCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
             ++L VL+L  N ++        GL +L   L+LS N L
Sbjct: 288 TLKDLKVLNLAYNKINKIADEAFYGLDNLQ-VLNLSYNLL 326

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 84.1 bits (208), Expect = 1e-18
 Identities = 44/263 (16%), Positives = 82/263 (31%), Gaps = 32/263 (12%)

Query: 21  LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVP--SLENLHKLQRVIISQ 78
           L   E L L+ N        S      L+ L +G       +   +  NL  L+ + +  
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 79  NHLGNYGEKDNLEFVNSLVNASRLELLQISDNNF-GGMLPEAVGNFSTRLGILSVAENQL 137
           + +            ++      L  L++        +L +        L  L +++NQ+
Sbjct: 83  SKIYFLHP-------DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI 135

Query: 138 FG-NIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQ--KLQMLGLNGNKFLGEIPSSI- 193
               +      L +L+ +D S NQ        +  LQ   L    L  N     +     
Sbjct: 136 RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG 195

Query: 194 -----------------GNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGT 236
                            GN   +       N +  S   SL    +++      +N+   
Sbjct: 196 KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255

Query: 237 IPSEVIGLSSLSI-YLDLSQNQL 258
             +   GL+  S+ +LDLS   +
Sbjct: 256 DQNTFAGLARSSVRHLDLSHGFV 278

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 82.9 bits (205), Expect = 3e-18
 Identities = 55/295 (18%), Positives = 101/295 (34%), Gaps = 49/295 (16%)

Query: 6   FNQLQGSLPSDLGFT-LPNLEGLNLAGNQFTG-PIPVSISNASNLRELMIGKNGFSG-KV 62
           F  L  ++  D  F  L  L  L+L+ NQ     +  S    ++L+ +    N       
Sbjct: 106 FCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165

Query: 63  PSLENLH--KLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAV 120
             LE L    L    ++ N L +    D  + +N   N   LE+L +S N +   +    
Sbjct: 166 HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV-LEILDVSGNGWTVDITGNF 224

Query: 121 GNFSTRLGILSVAE-------------------------------------NQLFGNIPS 143
            N  ++    S+                                         +F     
Sbjct: 225 SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR 284

Query: 144 GLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLN 203
               L +L++L+L+ N+       +   L  LQ+L L+ N       S+   L  +  ++
Sbjct: 285 VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344

Query: 204 FAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
             +N +      +    + L  LDL +N L     + +  + S+   + LS N+L
Sbjct: 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIP-DIFLSGNKL 393

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 79.1 bits (195), Expect = 6e-17
 Identities = 52/255 (20%), Positives = 95/255 (37%), Gaps = 29/255 (11%)

Query: 3   DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKV 62
           +  +N L   L S   + LP +  ++L  N        +      L+ L +  N  +   
Sbjct: 320 NLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT--- 375

Query: 63  PSLENLHKLQRVIISQNHLGNYGEKD--------------NLEFVNSLVNASRLELLQIS 108
            ++  +  +  + +S N L    + +              NL+ +  L+    L++L ++
Sbjct: 376 -TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILN 434

Query: 109 DNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGL-----RNLVNLELLDLSGNQFTS 163
            N F     +   + +  L  L + EN L     + L       L +L++L L+ N   S
Sbjct: 435 QNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS 494

Query: 164 RIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNL 223
             PG    L  L+ L LN N+ L  +  +      L  L+ + N L    P       +L
Sbjct: 495 LPPGVFSHLTALRGLSLNSNR-LTVLSHND-LPANLEILDISRNQLLAPNPDVF---VSL 549

Query: 224 IVLDLYNNNLSGTIP 238
            VLD+ +N       
Sbjct: 550 SVLDITHNKFICECE 564

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 76.0 bits (187), Expect = 6e-16
 Identities = 60/265 (22%), Positives = 106/265 (40%), Gaps = 27/265 (10%)

Query: 2   FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSG- 60
            D     +  SL S +  TL +L+ LNLA N+       +     NL+ L +  N     
Sbjct: 271 LDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329

Query: 61  KVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAV 120
              +   L K+  + + +NH+    +        +     +L+ L + DN    +     
Sbjct: 330 YSSNFYGLPKVAYIDLQKNHIAIIQD-------QTFKFLEKLQTLDLRDNALTTI----- 377

Query: 121 GNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTS-RIPGSIGDLQKLQMLG 179
            +F   +  + ++ N+L   +P      +   L+ LS N+  +  I   +  +  LQ+L 
Sbjct: 378 -HFIPSIPDIFLSGNKL-VTLPK---INLTANLIHLSENRLENLDILYFLLRVPHLQILI 432

Query: 180 LNGNKFLG-EIPSSIGNLTLLMTLNFAENMLEGSIPSSL-----GKCQNLIVLDLYNNNL 233
           LN N+F       +      L  L   ENML+ +  + L         +L VL L +N L
Sbjct: 433 LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL 492

Query: 234 SGTIPSEVIGLSSLSIYLDLSQNQL 258
           +   P     L++L   L L+ N+L
Sbjct: 493 NSLPPGVFSHLTALR-GLSLNSNRL 516

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 73.7 bits (181), Expect = 4e-15
 Identities = 45/259 (17%), Positives = 92/259 (35%), Gaps = 25/259 (9%)

Query: 6   FNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISN--ASNLRELMIGKNGFSGKVP 63
           F+       +       ++ G     +    P   + +    S++R L +        + 
Sbjct: 224 FSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLN 282

Query: 64  S--LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVG 121
           S   E L  L+ + ++ N +    +        +      L++L +S N  G +      
Sbjct: 283 SRVFETLKDLKVLNLAYNKINKIAD-------EAFYGLDNLQVLNLSYNLLGELYSSNFY 335

Query: 122 NFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLN 181
               ++  + + +N +        + L  L+ LDL  N  T+     I  +  +  + L+
Sbjct: 336 GL-PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLS 389

Query: 182 GNKFLGEIPSSIGNLTL-LMTLNFAENMLEG-SIPSSLGKCQNLIVLDLYNNNLSGTIPS 239
           GNK       ++  + L    ++ +EN LE   I   L +  +L +L L  N  S     
Sbjct: 390 GNKL-----VTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGD 444

Query: 240 EVIGLSSLSIYLDLSQNQL 258
           +    +     L L +N L
Sbjct: 445 QTPSENPSLEQLFLGENML 463

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 64.8 bits (158), Expect = 4e-12
 Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 4/116 (3%)

Query: 146 RNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEI-PSSIGNLTLLMTLNF 204
           + L   E L LS N   +    S   L++LQ+L L        I   +  NL  L  L+ 
Sbjct: 21  QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 205 AENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVI--GLSSLSIYLDLSQNQL 258
             + +    P +     +L  L LY   LS  +  +     L +L+  LDLS+NQ+
Sbjct: 81  GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT-RLDLSKNQI 135

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 83.5 bits (207), Expect = 4e-19
 Identities = 53/253 (20%), Positives = 96/253 (37%), Gaps = 19/253 (7%)

Query: 12  SLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGK---VPSLENL 68
           S+P+ +     +   L L  N+            + L +L +  NG S K     S    
Sbjct: 21  SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77

Query: 69  HKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLG 128
             L+ + +S N +            ++ +   +LE L    +N   M   +V      L 
Sbjct: 78  TSLKYLDLSFNGVITM--------SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 129

Query: 129 ILSVAENQLFGNIPSG-LRNLVNLELLDLSGNQFTSRI-PGSIGDLQKLQMLGLNGNKFL 186
            L ++         +G    L +LE+L ++GN F     P    +L+ L  L L+  + L
Sbjct: 130 YLDISHTHT-RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-L 187

Query: 187 GEIPSSI-GNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLS 245
            ++  +   +L+ L  LN + N              +L VLD   N++  +   E+    
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 247

Query: 246 SLSIYLDLSQNQL 258
           S   +L+L+QN  
Sbjct: 248 SSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 80.8 bits (200), Expect = 4e-18
 Identities = 53/237 (22%), Positives = 92/237 (38%), Gaps = 14/237 (5%)

Query: 3   DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFT--GPIPVSISNASNLRELMIGKNGFSG 60
           +   N+LQ SLP  +   L  L  L+L+ N  +  G    S    ++L+ L +  NG   
Sbjct: 34  ELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 92

Query: 61  KVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAV 120
              +   L +L+ +    ++L        +   +  ++   L  L IS  +   +    +
Sbjct: 93  MSSNFLGLEQLEHLDFQHSNL------KQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGI 145

Query: 121 GNFSTRLGILSVAENQLFGNIPSG-LRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLG 179
            N  + L +L +A N    N        L NL  LDLS  Q     P +   L  LQ+L 
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205

Query: 180 LNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSL--GKCQNLIVLDLYNNNLS 234
           ++ N F          L  L  L+++ N +  +           +L  L+L  N+ +
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 85.0 bits (210), Expect = 5e-19
 Identities = 57/264 (21%), Positives = 98/264 (37%), Gaps = 25/264 (9%)

Query: 6   FNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS- 64
           FN ++  LP  +   +P L  L L  N  +        N   L  L +  N    ++   
Sbjct: 108 FNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDD 165

Query: 65  -LENLHKLQRVIISQNHLGN--YGEKDNLEFVN-------SLVNASRLELLQISDNNFGG 114
             +    LQ + +S N L +       +L   N       +L     +E L  S N+   
Sbjct: 166 TFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS--- 222

Query: 115 MLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQK 174
            +    G  +  L IL +  N L     + L N   L  +DLS N+    +      +Q+
Sbjct: 223 -INVVRGPVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 279

Query: 175 LQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLS 234
           L+ L ++ N+ L  +      +  L  L+ + N L   +  +  +   L  L L +N++ 
Sbjct: 280 LERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337

Query: 235 GTIPSEVIGLSSLSIYLDLSQNQL 258
            T+        +L   L LS N  
Sbjct: 338 -TLKLST--HHTLK-NLTLSHNDW 357

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 73.0 bits (179), Expect = 5e-15
 Identities = 43/241 (17%), Positives = 90/241 (37%), Gaps = 25/241 (10%)

Query: 20  TLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSG-KVPSLENLHKLQRVIISQ 78
           TL N + +    +         + +   +  L +           +    H +Q++ +  
Sbjct: 49  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 108

Query: 79  NHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLF 138
           N +            +   N   L +L +  N+    LP  + + + +L  LS++ N L 
Sbjct: 109 NAIRYLPP-------HVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNL- 159

Query: 139 GNIPSG-LRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLT 197
             I     +   +L+ L LS N+ T  +   +  +  L    ++ N       S++    
Sbjct: 160 ERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLFHANVSYNLL-----STLAIPI 211

Query: 198 LLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQ 257
            +  L+ + N +   +   +     L +L L +NNL  T  + ++    L   +DLS N+
Sbjct: 212 AVEELDASHNSIN-VVRGPV--NVELTILKLQHNNL--TDTAWLLNYPGLV-EVDLSYNE 265

Query: 258 L 258
           L
Sbjct: 266 L 266

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 71.5 bits (175), Expect = 2e-14
 Identities = 45/239 (18%), Positives = 86/239 (35%), Gaps = 24/239 (10%)

Query: 7   NQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLE 66
           N L  SLP  +    P L  L+++ N        +    ++L+ L +  N  +  V  L 
Sbjct: 133 NDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD-LS 189

Query: 67  NLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNA---------SRLELLQISDNNFGGMLP 117
            +  L    +S N L        +E +++  N+           L +L++  NN      
Sbjct: 190 LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNL----- 244

Query: 118 EAVGNFS--TRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKL 175
                      L  + ++ N+L   +      +  LE L +S N+  + +      +  L
Sbjct: 245 TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTL 303

Query: 176 QMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLS 234
           ++L L+ N  L  +  +      L  L    N +  ++   L     L  L L +N+  
Sbjct: 304 KVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 70.3 bits (172), Expect = 5e-14
 Identities = 42/243 (17%), Positives = 86/243 (35%), Gaps = 25/243 (10%)

Query: 19  FTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS--LENLHKLQRVII 76
                   +++                +N + +    +    K+P+  L++  +++ + +
Sbjct: 24  QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNL 82

Query: 77  SQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQ 136
           +   +             +   A  ++ L +  N     LP  V      L +L +  N 
Sbjct: 83  NDLQIEEIDT-------YAFAYAHTIQKLYMGFNAI-RYLPPHVFQNVPLLTVLVLERND 134

Query: 137 LFGNIPSGL-RNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGN 195
           L  ++P G+  N   L  L +S N        +      LQ L L+ N+ L  +   +  
Sbjct: 135 L-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSL 190

Query: 196 LTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQ 255
           +  L   N + N+L     S+L     +  LD  +N+++  +   V     L+  L L  
Sbjct: 191 IPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV--NVELT-ILKLQH 241

Query: 256 NQL 258
           N L
Sbjct: 242 NNL 244

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 63.0 bits (153), Expect = 1e-11
 Identities = 33/170 (19%), Positives = 59/170 (34%), Gaps = 9/170 (5%)

Query: 95  SLVNASRLELLQISDNNFGGMLPEAVGNFS----TRLGILSVAENQLFGNIPSGLRNLVN 150
             ++++        D +      +    F         I++   + +     + L +   
Sbjct: 17  KCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQ 76

Query: 151 LELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSI-GNLTLLMTLNFAENML 209
           +ELL+L+  Q       +      +Q L +  N  +  +P  +  N+ LL  L    N L
Sbjct: 77  VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDL 135

Query: 210 EGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVI-GLSSLSIYLDLSQNQL 258
                        L  L + NNNL   I  +     +SL   L LS N+L
Sbjct: 136 SSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQ-NLQLSSNRL 183

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 79.3 bits (196), Expect = 2e-17
 Identities = 52/261 (19%), Positives = 102/261 (39%), Gaps = 28/261 (10%)

Query: 7   NQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVP--S 64
           N++   +       L  LE L L+ NQ    +P  +     L+EL + +N  + KV    
Sbjct: 86  NKIS-KISPGAFAPLVKLERLYLSKNQLKE-LPEKM--PKTLQELRVHENEIT-KVRKSV 140

Query: 65  LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFS 124
              L+++  V +  N L + G ++      +     +L  ++I+D N   +      +  
Sbjct: 141 FNGLNQMIVVELGTNPLKSSGIENG-----AFQGMKKLSYIRIADTNITTIPQGLPPS-- 193

Query: 125 TRLGILSVAENQLFGNIPSG-LRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGN 183
             L  L +  N++   + +  L+ L NL  L LS N  ++   GS+ +   L+ L LN N
Sbjct: 194 --LTELHLDGNKI-TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250

Query: 184 KFLGEIPSSIGNLTLLMTLNFAENMLEG------SIPSSLGKCQNLIVLDLYNNNLSGT- 236
           K L ++P  + +   +  +    N +          P    K  +   + L++N +    
Sbjct: 251 K-LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309

Query: 237 IPSEV-IGLSSLSIYLDLSQN 256
           I       +   +  + L   
Sbjct: 310 IQPSTFRCVYVRA-AVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 77.0 bits (190), Expect = 1e-16
 Identities = 65/271 (23%), Positives = 109/271 (40%), Gaps = 34/271 (12%)

Query: 12  SLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVP-SLENLHK 70
            +P DL    P+   L+L  N+ T        N  NL  L++  N  S   P +   L K
Sbjct: 45  KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 101

Query: 71  LQRVIISQNHLGNYGEK--DNLE------------FVNSLVNASRLELLQISDNNFG-GM 115
           L+R+ +S+N L    EK    L+              +     +++ ++++  N      
Sbjct: 102 LERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 161

Query: 116 LPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKL 175
           +         +L  + +A+  +   IP GL    +L  L L GN+ T     S+  L  L
Sbjct: 162 IENGAFQGMKKLSYIRIADTNI-TTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNL 218

Query: 176 QMLGLNGNKFLGEIPS-SIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLS 234
             LGL+ N  +  + + S+ N   L  L+   N L   +P  L   + + V+ L+NNN+S
Sbjct: 219 AKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

Query: 235 GTIPSEVI-------GLSSLSIYLDLSQNQL 258
             I S            +S S  + L  N +
Sbjct: 277 -AIGSNDFCPPGYNTKKASYS-GVSLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.2 bits (123), Expect = 8e-08
 Identities = 34/190 (17%), Positives = 65/190 (34%), Gaps = 26/190 (13%)

Query: 7   NQLQGSLPSDLGFT-LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVP-- 63
           N L+ S   +  F  +  L  + +A    T    +      +L EL +  N  + KV   
Sbjct: 155 NPLKSSGIENGAFQGMKKLSYIRIADTNITT---IPQGLPPSLTELHLDGNKIT-KVDAA 210

Query: 64  SLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNF 123
           SL+ L+ L ++ +S N +             SL N   L  L +++N     +P  + + 
Sbjct: 211 SLKGLNNLAKLGLSFNSISAVDN-------GSLANTPHLRELHLNNNKLV-KVPGGLADH 262

Query: 124 STRLGILSVAENQLFGNIPSG-------LRNLVNLELLDLSGNQFTSRI--PGSIGDLQK 174
              + ++ +  N +   I S             +   + L  N        P +   +  
Sbjct: 263 -KYIQVVYLHNNNI-SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 320

Query: 175 LQMLGLNGNK 184
              + L   K
Sbjct: 321 RAAVQLGNYK 330

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 79.6 bits (196), Expect = 3e-17
 Identities = 48/257 (18%), Positives = 87/257 (33%), Gaps = 42/257 (16%)

Query: 7   NQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLE 66
           N+    L   L   +     L L     +  +P ++     +  L I +N     +P L 
Sbjct: 47  NEAVSLLKECL---INQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLPEL- 98

Query: 67  NLHKLQRVIISQNHLGNYGEKDNLEFVNSL-VNASRLELLQISDNNFGGMLPEAVGNFST 125
               L+ +    N L            ++L    + L+ L + +N    MLPE       
Sbjct: 99  -PASLEYLDACDNRL------------STLPELPASLKHLDVDNNQLT-MLPELPAL--- 141

Query: 126 RLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKF 185
            L  ++   NQL   +P    +L   E+L +  NQ T  +P     L+ L    ++ N  
Sbjct: 142 -LEYINADNNQL-TMLPELPTSL---EVLSVRNNQLTF-LPELPESLEALD---VSTNL- 191

Query: 186 LGEIPSSIGNLT----LLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEV 241
           L  +P+            +     EN +   IP ++        + L +N LS +   E 
Sbjct: 192 LESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS-SRIRES 249

Query: 242 IGLSSLSIYLDLSQNQL 258
           +   +        +   
Sbjct: 250 LSQQTAQPDYHGPRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 77.7 bits (191), Expect = 2e-16
 Identities = 56/260 (21%), Positives = 93/260 (35%), Gaps = 43/260 (16%)

Query: 6   FNQLQGSLPSDLGFTLPNLEGLNLAG---NQFTGPIPVSISNASNLRELMIGKNGFSGKV 62
           +N +     +D        E   L G   N+    +   + N     EL + +   S  +
Sbjct: 19  YNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN--QFSELQLNRLNLS-SL 74

Query: 63  PSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGN 122
           P      ++  + I+QN L                +   LE L   DN     LPE   +
Sbjct: 75  PD-NLPPQITVLEITQNALI--------SLPELPAS---LEYLDACDNRL-STLPELPAS 121

Query: 123 FSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNG 182
               L  L V  NQL   +P        LE ++   NQ T  +P        L++L +  
Sbjct: 122 ----LKHLDVDNNQL-TMLPELPA---LLEYINADNNQLTM-LPELPT---SLEVLSVRN 169

Query: 183 NKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNL----IVLDLYNNNLSGTIP 238
           N+ L  +P    +L     L+ + N+LE S+P+   +  +     I      N ++  IP
Sbjct: 170 NQ-LTFLPELPESLE---ALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIP 223

Query: 239 SEVIGLSSLSIYLDLSQNQL 258
             ++ L      + L  N L
Sbjct: 224 ENILSLDPTC-TIILEDNPL 242

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 58.4 bits (141), Expect = 5e-10
 Identities = 39/232 (16%), Positives = 69/232 (29%), Gaps = 30/232 (12%)

Query: 6   FNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSL 65
            N+L  +LP        +L+ L++  NQ T  +P   +    L  +    N  +      
Sbjct: 109 DNRLS-TLPELPA----SLKHLDVDNNQLTM-LPELPAL---LEYINADNNQLTMLPELP 159

Query: 66  ENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVG---N 122
            +L  L    +  N L                +   LE L +S N     LP       +
Sbjct: 160 TSLEVL---SVRNNQLT--------FLPELPES---LEALDVSTNLLES-LPAVPVRNHH 204

Query: 123 FSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNG 182
                      EN++  +IP  + +L     + L  N  +SRI  S+             
Sbjct: 205 SEETEIFFRCRENRI-THIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPR 263

Query: 183 NKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLS 234
             F         N       +        +  S + +  +    + + N  S
Sbjct: 264 IYFSMSDGQQ--NTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFS 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 78.2 bits (193), Expect = 6e-17
 Identities = 53/259 (20%), Positives = 102/259 (39%), Gaps = 26/259 (10%)

Query: 12  SLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS--LENLH 69
           S+PS L      ++ L+L+ N+ T      +    NL+ L++  NG +  +      +L 
Sbjct: 45  SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLG 100

Query: 70  KLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGI 129
            L+ + +S N+L N          +     S L  L +  N +  +   ++ +  T+L I
Sbjct: 101 SLEHLDLSYNYLSNLSS-------SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 153

Query: 130 LSVAENQLFGNIPSG-LRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGE 188
           L V     F  I       L  LE L++  +   S  P S+  +Q +  L L+  +    
Sbjct: 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HIL 212

Query: 189 IPSSI-GNLTLLMTLNFAENMLEG----SIPS----SLGKCQNLIVLDLYNNNLSGTIPS 239
           +        + +  L   +  L+      + +    SL K      + + + +L   +  
Sbjct: 213 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMK 271

Query: 240 EVIGLSSLSIYLDLSQNQL 258
            +  +S L   L+ S+NQL
Sbjct: 272 LLNQISGLL-ELEFSRNQL 289

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 74.4 bits (183), Expect = 1e-15
 Identities = 48/267 (17%), Positives = 85/267 (31%), Gaps = 26/267 (9%)

Query: 3   DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKV 62
           D   N++   + +       NL+ L L  N        S S+  +L  L +  N  S  +
Sbjct: 58  DLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NL 115

Query: 63  PS--LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQ---ISDNNFGGMLP 117
            S   + L  L  + +  N     GE      +  L       +     I   +F G+  
Sbjct: 116 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL-- 173

Query: 118 EAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQM 177
                  T L  L +  + L    P  L+++ N+  L L   Q    +   +     ++ 
Sbjct: 174 -------TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVEC 226

Query: 178 LGLNGNKF----LGEIPS----SIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLY 229
           L L           E+ +    S+        +   +  L   +   L +   L+ L+  
Sbjct: 227 LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFS 285

Query: 230 NNNLSGTIPSEVIGLSSLSIYLDLSQN 256
            N L          L+SL   + L  N
Sbjct: 286 RNQLKSVPDGIFDRLTSLQ-KIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 55.5 bits (134), Expect = 3e-09
 Identities = 34/186 (18%), Positives = 60/186 (32%), Gaps = 13/186 (6%)

Query: 7   NQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSI-SNASNLRELMIGKNGFSGKVP-- 63
           N  +    + L   L  L+ L +        I     +  + L EL I  +         
Sbjct: 134 NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPK 192

Query: 64  SLENLHKLQRVIISQNHLGNYGEK--DNLEFVNSLVNASRLELLQISDNNFGGMLPEAVG 121
           SL+++  +  +I+         E   D    V  L     L    +   +F  +      
Sbjct: 193 SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL----ELRDTDLDTFHFSELSTGETN 248

Query: 122 NFS--TRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLG 179
           +         + + +  LF  +   L  +  L  L+ S NQ  S   G    L  LQ + 
Sbjct: 249 SLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIW 307

Query: 180 LNGNKF 185
           L+ N +
Sbjct: 308 LHTNPW 313

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 77.0 bits (190), Expect = 9e-17
 Identities = 47/232 (20%), Positives = 77/232 (33%), Gaps = 39/232 (16%)

Query: 6   FNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS- 64
            N++   +P+       NL  L L  N        + +  + L +L +  N     V   
Sbjct: 41  GNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA 99

Query: 65  -LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNF 123
               L +L  + + +  L                         +    F G+        
Sbjct: 100 TFHGLGRLHTLHLDRCGLQE-----------------------LGPGLFRGL-------- 128

Query: 124 STRLGILSVAENQLFGNIPSG-LRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNG 182
              L  L + +N L   +P    R+L NL  L L GN+ +S    +   L  L  L L+ 
Sbjct: 129 -AALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186

Query: 183 NKFLGEIPSSI-GNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNL 233
           N+ +  +      +L  LMTL    N L      +L   + L  L L +N  
Sbjct: 187 NR-VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 72.7 bits (179), Expect = 3e-15
 Identities = 36/168 (21%), Positives = 53/168 (31%), Gaps = 7/168 (4%)

Query: 94  NSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSG-LRNLVNLE 152
            S      L +L +  N    +   A       L  L +++N    ++       L  L 
Sbjct: 50  ASFRACRNLTILWLHSNVLARIDAAAFTGL-ALLEQLDLSDNAQLRSVDPATFHGLGRLH 108

Query: 153 LLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSI-GNLTLLMTLNFAENMLEG 211
            L L         PG    L  LQ L L  N  L  +P     +L  L  L    N +  
Sbjct: 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISS 167

Query: 212 SIPSSLGKCQNLIVLDLYNNNLSGTIPSEVI-GLSSLSIYLDLSQNQL 258
               +     +L  L L+ N ++  +       L  L   L L  N L
Sbjct: 168 VPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLM-TLYLFANNL 213

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 60.0 bits (146), Expect = 8e-11
 Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 8/121 (6%)

Query: 141 IPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSI-GNLTLL 199
           +P G+      + + L GN+ +     S    + L +L L+ N  L  I ++    L LL
Sbjct: 26  VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALL 82

Query: 200 MTLNFAENMLEGSIPSS-LGKCQNLIVLDLYNNNLSGTIPSEV-IGLSSLSIYLDLSQNQ 257
             L+ ++N    S+  +       L  L L    L   +   +  GL++L  YL L  N 
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQ-YLYLQDNA 140

Query: 258 L 258
           L
Sbjct: 141 L 141

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 77.1 bits (189), Expect = 3e-16
 Identities = 46/227 (20%), Positives = 94/227 (41%), Gaps = 23/227 (10%)

Query: 21  LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNH 80
                  NL     T  +    +  +++ +++   +     V  ++ L  + ++ ++ N 
Sbjct: 20  FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQGIQYLPNVTKLFLNGNK 76

Query: 81  LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGN 140
           L       +++ + +L N   L  L + +N    +   ++ +   +L  LS+  N +  +
Sbjct: 77  L------TDIKPLTNLKN---LGWLFLDENKIKDL--SSLKDL-KKLKSLSLEHNGI-SD 123

Query: 141 IPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLM 200
           I +GL +L  LE L L  N+ T      +  L KL  L L  N+ + +I   +  LT L 
Sbjct: 124 I-NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQ-ISDI-VPLAGLTKLQ 178

Query: 201 TLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSL 247
            L  ++N +  S   +L   +NL VL+L++        +    L   
Sbjct: 179 NLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVP 223

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 71.3 bits (174), Expect = 2e-14
 Identities = 37/213 (17%), Positives = 76/213 (35%), Gaps = 21/213 (9%)

Query: 21  LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNH 80
           L +++ +    +         I    N+ +L +  N  +  +  L NL  L  + + +N 
Sbjct: 42  LNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLT-DIKPLTNLKNLGWLFLDENK 98

Query: 81  LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGN 140
           +       +L  +  L     L+ L +  N    +    + +   +L  L +  N++   
Sbjct: 99  I------KDLSSLKDLKK---LKSLSLEHNGISDI--NGLVHL-PQLESLYLGNNKI--T 144

Query: 141 IPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLM 200
             + L  L  L+ L L  NQ +  I   +  L KLQ L L+ N  + ++  ++  L  L 
Sbjct: 145 DITVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNH-ISDL-RALAGLKNLD 200

Query: 201 TLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNL 233
            L            +          +   + +L
Sbjct: 201 VLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.9 bits (173), Expect = 3e-14
 Identities = 39/198 (19%), Positives = 84/198 (42%), Gaps = 23/198 (11%)

Query: 61  KVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAV 120
           ++   +   +  +  + +  +       +    N L +   ++ +  ++++   +  + +
Sbjct: 13  QIFPDDAFAETIKDNLKKKSV------TDAVTQNELNS---IDQIIANNSDIKSV--QGI 61

Query: 121 GNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGL 180
                 +  L +  N+L  +I   L NL NL  L L  N+    +   + DL+KL+ L L
Sbjct: 62  QYL-PNVTKLFLNGNKL-TDI-KPLTNLKNLGWLFLDENKIKD-LSS-LKDLKKLKSLSL 116

Query: 181 NGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSE 240
             N  + +I + + +L  L +L    N +  +  + L +   L  L L +N +S      
Sbjct: 117 EHNG-ISDI-NGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDI--VP 170

Query: 241 VIGLSSLSIYLDLSQNQL 258
           + GL+ L   L LS+N +
Sbjct: 171 LAGLTKLQ-NLYLSKNHI 187

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.5 bits (172), Expect = 4e-14
 Identities = 56/225 (24%), Positives = 95/225 (42%), Gaps = 23/225 (10%)

Query: 21  LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNH 80
           LPN+  L L GN+ T   P  ++N  NL  L + +N     + SL++L KL+ + +  N 
Sbjct: 64  LPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLSSLKDLKKLKSLSLEHNG 120

Query: 81  LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGN 140
           + +         +N LV+  +LE L + +N    +    +    T+L  LS+ +NQ+  +
Sbjct: 121 ISD---------INGLVHLPQLESLYLGNNKITDI--TVLSRL-TKLDTLSLEDNQI-SD 167

Query: 141 IPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLM 200
           I   L  L  L+ L LS N  +      +  L+ L +L L   + L +  +   NL +  
Sbjct: 168 I-VPLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPN 224

Query: 201 TLNFAENMLEG----SIPSSLGKCQNLIVLDLYNNNLSGTIPSEV 241
           T+   +  L      S      K      L  + N +S      V
Sbjct: 225 TVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPV 269

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 74.7 bits (184), Expect = 7e-16
 Identities = 54/249 (21%), Positives = 91/249 (36%), Gaps = 30/249 (12%)

Query: 21  LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVP--SLENLHKLQRVIISQ 78
           L  L+ L ++ N     IP ++   S+L EL I  N    KVP      L  +  + +  
Sbjct: 101 LRKLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGG 156

Query: 79  NHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLF 138
           N L N G +    F        +L  L+IS+    G+  +        L  L +  N++ 
Sbjct: 157 NPLENSGFEPGA-FDGL-----KLNYLRISEAKLTGIPKDLPET----LNELHLDHNKI- 205

Query: 139 GNIPSG-LRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLT 197
             I    L     L  L L  NQ      GS+  L  L+ L L+ NK L  +P+ + +L 
Sbjct: 206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLK 264

Query: 198 LLMTLNFAENMLEGSIPSS-------LGKCQNLIVLDLYNNNLS-GTIPSEVI-GLSSLS 248
           LL  +    N +   +  +         K      + L+NN +    +       ++   
Sbjct: 265 LLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL 323

Query: 249 IYLDLSQNQ 257
             +     +
Sbjct: 324 -AIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 71.6 bits (176), Expect = 1e-14
 Identities = 57/253 (22%), Positives = 93/253 (36%), Gaps = 29/253 (11%)

Query: 12  SLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS--LENLH 69
           ++P ++    P+   L+L  N  +           +L  L++  N  S K+       L 
Sbjct: 47  AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLR 102

Query: 70  KLQRVIISQNHLGNYGEKDNLEFVNSLVNA--SRLELLQISDNNFGGMLPEAVGNFSTRL 127
           KLQ++ IS+NHL              +     S L  L+I DN    +           +
Sbjct: 103 KLQKLYISKNHL------------VEIPPNLPSSLVELRIHDNRIRKVPKGVFSGL-RNM 149

Query: 128 GILSVAENQL-FGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFL 186
             + +  N L       G  + + L  L +S  + T  IP  +   + L  L L+ NK +
Sbjct: 150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDL--PETLNELHLDHNK-I 205

Query: 187 GEIPS-SIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLS 245
             I    +   + L  L    N +      SL     L  L L NN LS  +P+ +  L 
Sbjct: 206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLK 264

Query: 246 SLSIYLDLSQNQL 258
            L   + L  N +
Sbjct: 265 LLQ-VVYLHTNNI 276

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 72.6 bits (178), Expect = 5e-15
 Identities = 44/166 (26%), Positives = 67/166 (40%), Gaps = 10/166 (6%)

Query: 100 SRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSG-LRNLVNLELLDLSG 158
           S   LL +S NN   +  E      T L  L ++ N L   I S     + NL  LDLS 
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSS 97

Query: 159 NQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSI-GNLTLLMTLNFAENMLEGSIP--- 214
           N   +       DLQ L++L L  N  +  +  +   ++  L  L  ++N +    P   
Sbjct: 98  NHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVEL 155

Query: 215 -SSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLS-IYLDLSQNQL 258
                K   L++LDL +N L     +++  L +     L L  N L
Sbjct: 156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.9 bits (127), Expect = 2e-08
 Identities = 40/187 (21%), Positives = 62/187 (33%), Gaps = 38/187 (20%)

Query: 3   DFPFNQLQGSLPSDLGFT-LPNLEGLNLAGNQFTGPIPVSI-SNASNLRELMIGKNGFSG 60
           D   N L   L ++   T L NL  L L+ N     I         NLR L +  N    
Sbjct: 45  DLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLSSNHLH- 101

Query: 61  KVPS--LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPE 118
            +      +L  L+ +++  NH+            N+  + ++L+ L +S N        
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIVVVDR-------NAFEDMAQLQKLYLSQNQ------- 147

Query: 119 AVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQM- 177
                      +S    +L          L  L LLDLS N+        +  L      
Sbjct: 148 -----------ISRFPVELI----KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN 192

Query: 178 -LGLNGN 183
            L L+ N
Sbjct: 193 GLYLHNN 199

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 70.1 bits (172), Expect = 2e-14
 Identities = 54/227 (23%), Positives = 84/227 (37%), Gaps = 43/227 (18%)

Query: 7   NQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLE 66
             L  +LP DL     +   L+L+ N        ++   + L +L + +   + K+    
Sbjct: 20  RNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDG 74

Query: 67  NLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTR 126
            L  L  + +S N L +                                LP         
Sbjct: 75  TLPVLGTLDLSHNQLQS--------------------------------LPLLGQTL-PA 101

Query: 127 LGILSVAENQLFGNIPSGL-RNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKF 185
           L +L V+ N+L  ++P G  R L  L+ L L GN+  +  PG +    KL+ L L  N  
Sbjct: 102 LTVLDVSFNRL-TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN- 159

Query: 186 LGEIPSSI-GNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNN 231
           L E+P+ +   L  L TL   EN L  +IP        L    L+ N
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 68.6 bits (168), Expect = 9e-14
 Identities = 47/165 (28%), Positives = 69/165 (41%), Gaps = 14/165 (8%)

Query: 97  VNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDL 156
            + + L L      N       A     TRL  L++   +L   +      L  L  LDL
Sbjct: 31  KDTTILHL----SENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVD-GTLPVLGTLDL 84

Query: 157 SGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSI-GNLTLLMTLNFAENMLEGSIPS 215
           S NQ  S +P     L  L +L ++ N+ L  +P      L  L  L    N L+ ++P 
Sbjct: 85  SHNQLQS-LPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELK-TLPP 141

Query: 216 SL-GKCQNLIVLDLYNNNLSGTIPSEVI-GLSSLSIYLDLSQNQL 258
            L      L  L L NNNL+  +P+ ++ GL +L   L L +N L
Sbjct: 142 GLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLD-TLLLQENSL 184

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 64.0 bits (156), Expect = 3e-12
 Identities = 50/159 (31%), Positives = 72/159 (45%), Gaps = 10/159 (6%)

Query: 100 SRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGN 159
           +RL  L +        L   V      LG L ++ NQL  ++P   + L  L +LD+S N
Sbjct: 55  TRLTQLNLDRAELT-KLQ--VDGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFN 110

Query: 160 QFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSI-GNLTLLMTLNFAENMLEGSIPSSL- 217
           + TS   G++  L +LQ L L GN+ L  +P  +      L  L+ A N L   +P+ L 
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLL 168

Query: 218 GKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQN 256
              +NL  L L  N+L  TIP    G   L  +  L  N
Sbjct: 169 NGLENLDTLLLQENSLY-TIPKGFFGSHLLP-FAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 61.7 bits (150), Expect = 2e-11
 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 8/119 (6%)

Query: 141 IPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLM 200
           +P  L    +  +L LS N   +    ++    +L  L L+  + L ++    G L +L 
Sbjct: 25  LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLG 80

Query: 201 TLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVI-GLSSLSIYLDLSQNQL 258
           TL+ + N L+ S+P        L VLD+  N L+ ++P   + GL  L   L L  N+L
Sbjct: 81  TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQ-ELYLKGNEL 136

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 68.4 bits (168), Expect = 2e-14
 Identities = 31/217 (14%), Positives = 67/217 (30%), Gaps = 38/217 (17%)

Query: 19  FTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQ 78
                 +         +    ++ +  ++L  + +     +  +  +E  H ++ + I+ 
Sbjct: 17  IPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT-DLTGIEYAHNIKDLTINN 75

Query: 79  NHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLF 138
            H  NY     L                                  + L  L +    + 
Sbjct: 76  IHATNYNPISGL----------------------------------SNLERLRIMGKDVT 101

Query: 139 GNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTL 198
            +    L  L +L LLD+S +     I   I  L K+  + L+ N  + +I   +  L  
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPE 160

Query: 199 LMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSG 235
           L +LN   + +       +     L  L  ++  + G
Sbjct: 161 LKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.4 bits (160), Expect = 3e-13
 Identities = 26/193 (13%), Positives = 62/193 (32%), Gaps = 19/193 (9%)

Query: 66  ENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFST 125
                    ++ Q+   N           +    + L  + +++ N   +    +     
Sbjct: 20  STFKAYLNGLLGQSSTANI----------TEAQMNSLTYITLANINVTDL--TGIEYA-H 66

Query: 126 RLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKF 185
            +  L++          + +  L NLE L + G   TS    ++  L  L +L ++ +  
Sbjct: 67  NIKDLTINNIHA--TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124

Query: 186 LGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLS 245
              I + I  L  + +++ + N     I   L     L  L++  + +       +    
Sbjct: 125 DDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFP 181

Query: 246 SLSIYLDLSQNQL 258
            L+  L      +
Sbjct: 182 KLN-QLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 16/108 (14%), Positives = 38/108 (35%), Gaps = 10/108 (9%)

Query: 7   NQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLE 66
             +      +L   L +L  L+++ +     I   I+    +  + +  NG    +  L+
Sbjct: 98  KDVTSDKIPNLS-GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLK 156

Query: 67  NLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGG 114
            L +L+ + I  + + +            + +  +L  L       GG
Sbjct: 157 TLPELKSLNIQFDGVHD---------YRGIEDFPKLNQLYAFSQTIGG 195

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 69.0 bits (169), Expect = 1e-13
 Identities = 47/275 (17%), Positives = 93/275 (33%), Gaps = 29/275 (10%)

Query: 7   NQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSI---SNASNLRELMIGKNGF----- 58
           N ++   P+     +     L+L  N+    I           +   L +          
Sbjct: 139 NNIKKIQPASFFLNMRRFHVLDLTFNKVKS-ICEEDLLNFQGKHFTLLRLSSITLQDMNE 197

Query: 59  ----SGKVPSLENLHKLQRVIISQNHLGN------YGEKDNLEFVNSLVNASRLELLQIS 108
                 K  +      +  + +S N          +      +  + +++ S        
Sbjct: 198 YWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG 257

Query: 109 DNNFGGMLPEA-VGNFSTRLGILSVAENQLFGNIPSGL-RNLVNLELLDLSGNQFTSRIP 166
             NF         G  ++ +    ++++++F  +   +  +  +LE L L+ N+      
Sbjct: 258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDD 316

Query: 167 GSIGDLQKLQMLGLNGNKFLGEIPSSI-GNLTLLMTLNFAENMLEGSIPS-SLGKCQNLI 224
            +   L  L  L L+ N  LG I S +  NL  L  L+ + N +  ++   S     NL 
Sbjct: 317 NAFWGLTHLLKLNLSQNF-LGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLK 374

Query: 225 VLDLYNNNLSGTIPSEVI-GLSSLSIYLDLSQNQL 258
            L L  N L  ++P  +   L+SL   + L  N  
Sbjct: 375 ELALDTNQLK-SVPDGIFDRLTSLQ-KIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 67.5 bits (165), Expect = 4e-13
 Identities = 54/306 (17%), Positives = 104/306 (33%), Gaps = 64/306 (20%)

Query: 7   NQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSI-SNASNLRELMIGKNGF-SGKVP- 63
                 + ++    L +L  L L  NQF   +     +  +NL  L + +       +  
Sbjct: 64  QTPGLVIRNNTFRGLSSLIILKLDYNQFLQ-LETGAFNGLANLEVLTLTQCNLDGAVLSG 122

Query: 64  -SLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGN 122
              + L  L+ +++  N++        ++  +  +N  R  +L ++ N    +  E + N
Sbjct: 123 NFFKPLTSLEMLVLRDNNI------KKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN 176

Query: 123 F-STRLGILSVAENQL-------FGNIPSG-LRNLVNLELLDLSGNQFTSRIPGSIGDL- 172
           F      +L ++   L        G    G      ++  LDLSGN F   +     D  
Sbjct: 177 FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI 236

Query: 173 --------------------------------------QKLQMLGLNGNKFLGEIPSSI- 193
                                                   ++   L+ +K +  +  S+ 
Sbjct: 237 AGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IFALLKSVF 295

Query: 194 GNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVI-GLSSLSIYLD 252
            + T L  L  A+N +     ++     +L+ L+L  N L  +I S +   L  L   LD
Sbjct: 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLE-VLD 353

Query: 253 LSQNQL 258
           LS N +
Sbjct: 354 LSYNHI 359

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 67.5 bits (165), Expect = 4e-13
 Identities = 49/285 (17%), Positives = 93/285 (32%), Gaps = 38/285 (13%)

Query: 3   DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSI-SNASNLRELMIGKNGFSGK 61
           D   N +   L       L +L+ L +        I  +     S+L  L +  N F  +
Sbjct: 36  DLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-Q 93

Query: 62  VPS--LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEA 119
           + +     L  L+ + ++Q +L       N          + LE+L + DNN   + P +
Sbjct: 94  LETGAFNGLANLEVLTLTQCNLDGAVLSGNF-----FKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 120 VGNFSTRLGILSVAENQL----------FGNIPSGLRNLVNLELLDLSGNQFTSRIPGSI 169
                 R  +L +  N++          F      L  L ++ L D++         G+ 
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208

Query: 170 GDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQ-------- 221
                +  L L+GN F   +     +      +         ++ SS G           
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268

Query: 222 -------NLIVLDLYNNNLSGTIPSEV-IGLSSLSIYLDLSQNQL 258
                   +   DL  + +   +   V    + L   L L+QN++
Sbjct: 269 FKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLE-QLTLAQNEI 311

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 62.5 bits (152), Expect = 2e-11
 Identities = 39/240 (16%), Positives = 80/240 (33%), Gaps = 25/240 (10%)

Query: 22  PNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS--LENLHKLQRVIISQN 79
            ++  ++L+ N        S S   +L+ L + +      + +     L  L  + +  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 80  HLGNYGEKDNLEFVNSLVNASRLELLQISDNNF-GGMLPEAVGNFSTRLGILSVAENQLF 138
                     LE   +    + LE+L ++  N  G +L        T L +L + +N + 
Sbjct: 90  QF------LQLE-TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK 142

Query: 139 GNIPSGL-RNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLT 197
              P+    N+    +LDL+ N+  S     + + Q      L               L+
Sbjct: 143 KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL--------------RLS 188

Query: 198 LLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQ 257
            +   +  E  L      +  K  ++  LDL  N    ++        + +    L  + 
Sbjct: 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 61.7 bits (150), Expect = 3e-11
 Identities = 37/162 (22%), Positives = 60/162 (37%), Gaps = 6/162 (3%)

Query: 102 LELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGL-RNLVNLELLDLSGNQ 160
           +  + +S N+    L E   +    L  L V +      I +   R L +L +L L  NQ
Sbjct: 32  VNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 161 FTSRIPGSIGDLQKLQMLGLNGNKF-LGEIPSSI-GNLTLLMTLNFAENMLEGSIPSSL- 217
           F     G+   L  L++L L         +  +    LT L  L   +N ++   P+S  
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 218 GKCQNLIVLDLYNNNLSGTIPSEVIGLSSLS-IYLDLSQNQL 258
              +   VLDL  N +      +++         L LS   L
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITL 192

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 60.5 bits (147), Expect = 9e-11
 Identities = 28/113 (24%), Positives = 40/113 (35%), Gaps = 4/113 (3%)

Query: 149 VNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSI-GNLTLLMTLNFAEN 207
            ++  +DLS N        S   LQ LQ L +        I ++    L+ L+ L    N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 208 MLEGSIPSSLGKCQNLIVLDLYNNNL-SGTIPSEV-IGLSSLSIYLDLSQNQL 258
                   +     NL VL L   NL    +       L+SL   L L  N +
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE-MLVLRDNNI 141

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 68.5 bits (168), Expect = 2e-13
 Identities = 55/264 (20%), Positives = 90/264 (34%), Gaps = 47/264 (17%)

Query: 7   NQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLE 66
           N L   LP     +L +L   N      +   P        L  L +  N    K+P L+
Sbjct: 101 NSLT-ELPELPQ-SLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLE-KLPELQ 150

Query: 67  NLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTR 126
           N   L+ + +  N L         +  +   +   LE +   +N     LPE + N    
Sbjct: 151 NSSFLKIIDVDNNSLK--------KLPDLPPS---LEFIAAGNNQLEE-LPE-LQNL-PF 196

Query: 127 LGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFL 186
           L  +    N L   +P      ++LE +    N         + +L  L  +  + N  L
Sbjct: 197 LTAIYADNNSL-KKLPD---LPLSLESIVAGNNILEE--LPELQNLPFLTTIYADNNL-L 249

Query: 187 GEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPS-EVIGLS 245
             +P    +L     LN  +N L   +P        L V +   + LS   P+   +  S
Sbjct: 250 KTLPDLPPSLE---ALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 305

Query: 246 SLSI-----------YLDLSQNQL 258
           S  I            L++S N+L
Sbjct: 306 SNEIRSLCDLPPSLEELNVSNNKL 329

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 67.7 bits (166), Expect = 4e-13
 Identities = 57/263 (21%), Positives = 92/263 (34%), Gaps = 53/263 (20%)

Query: 21  LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNH 80
           LP L  +    N     +P    +   L  ++ G N    ++P L+NL  L  +    N 
Sbjct: 194 LPFLTAIYADNNSLKK-LPDLPLS---LESIVAGNNILE-ELPELQNLPFLTTIYADNNL 248

Query: 81  LGNY-GEKDNLEFVNSLVNA--------SRLELLQISDNNFGGMLPEAVGNFSTRLGILS 131
           L        +LE +N   N           L  L +S+N F G L E   N    L  L+
Sbjct: 249 LKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSG-LSELPPN----LYYLN 303

Query: 132 VAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPS 191
            + N++  ++        +LE L++S N+    +P     L++L     + N  L E+P 
Sbjct: 304 ASSNEI-RSLCD---LPPSLEELNVSNNKLIE-LPALPPRLERLI---ASFNH-LAEVPE 354

Query: 192 SIGNLTLLMTLNFAENMLEGSIPSSLGK----------------CQNLIVLDLYNNNLSG 235
              NL     L+   N L    P                      QNL  L +  N L  
Sbjct: 355 LPQNLK---QLHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR- 409

Query: 236 TIPSEVIGLSSLSIYLDLSQNQL 258
             P     +      L ++  ++
Sbjct: 410 EFPDIPESVE----DLRMNSERV 428

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 64.2 bits (157), Expect = 5e-12
 Identities = 41/255 (16%), Positives = 81/255 (31%), Gaps = 50/255 (19%)

Query: 19  FTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQ 78
            +   L+      +  T  +PV   N  +  E     + +    P               
Sbjct: 8   VSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAP--------------- 51

Query: 79  NHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLF 138
              G   E       + L    +   L++++      LPE   +    L  L  + N L 
Sbjct: 52  PGNGEQREMAVSRLRDCLDR--QAHELELNNLGL-SSLPELPPH----LESLVASCNSL- 103

Query: 139 GNIPSGLRNLVNLELLDLSGNQFTSRIPG---------------SIGDLQKLQMLGLNGN 183
             +P   ++L +L + + +    +   P                 + +   L+++ ++ N
Sbjct: 104 TELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNN 163

Query: 184 KFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIG 243
             L ++P    +L     +    N LE  +P  L     L  +   NN+L   +P   + 
Sbjct: 164 S-LKKLPDLPPSLE---FIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLK-KLPDLPLS 216

Query: 244 LSSLSIYLDLSQNQL 258
           L S    +    N L
Sbjct: 217 LES----IVAGNNIL 227

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.9 bits (156), Expect = 7e-12
 Identities = 50/270 (18%), Positives = 90/270 (33%), Gaps = 50/270 (18%)

Query: 1   DFDFPFNQLQGSLPSDLG------------FTLPNLEGLNLAGNQFTGPIPVSISNASNL 48
           ++   +++ + + P   G                    L L     +  +P    +   L
Sbjct: 38  EYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPELPPH---L 93

Query: 49  RELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQIS 108
             L+   N  +      ++L  L     +   L +                  LE L +S
Sbjct: 94  ESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPL--------------LEYLGVS 139

Query: 109 DNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGS 168
           +N     LPE + N  + L I+ V  N L   +P       +LE +    NQ    +P  
Sbjct: 140 NNQLEK-LPE-LQNS-SFLKIIDVDNNSL-KKLPDLP---PSLEFIAAGNNQLEE-LP-E 190

Query: 169 IGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDL 228
           + +L  L  +  + N  L ++P    +L    ++    N+L       L     L  +  
Sbjct: 191 LQNLPFLTAIYADNNS-LKKLPDLPLSLE---SIVAGNNIL--EELPELQNLPFLTTIYA 244

Query: 229 YNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
            NN L  T+P     L +    L++  N L
Sbjct: 245 DNNLLK-TLPDLPPSLEA----LNVRDNYL 269

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 46/246 (18%), Positives = 75/246 (30%), Gaps = 37/246 (15%)

Query: 21  LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNH 80
           LP L  +    N     +P    +   L  L +  N  +      ++L  L       + 
Sbjct: 236 LPFLTTIYADNNLLKT-LPDLPPS---LEALNVRDNYLTDLPELPQSLTFLDVSENIFSG 291

Query: 81  LGNYGEKDNLEFVNSLVNA--------SRLELLQISDNNFGGMLPEAVGNFSTRLGILSV 132
           L       NL ++N+  N           LE L +S+N     LP         L  L  
Sbjct: 292 LSE--LPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR----LERLIA 344

Query: 133 AENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSS 192
           + N L   +P   +NL   + L +  N      P     ++ L+M     N  L E+P  
Sbjct: 345 SFNHL-AEVPELPQNL---KQLHVEYNPLRE-FPDIPESVEDLRM-----NSHLAEVPEL 394

Query: 193 IGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLD 252
             NL     L+   N L    P       ++  L + +  +             L     
Sbjct: 395 PQNLK---QLHVETNPLR-EFPDIPE---SVEDLRMNSERVVDPYEFAHETTDKLED-DV 446

Query: 253 LSQNQL 258
              +  
Sbjct: 447 FEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 33/170 (19%), Positives = 59/170 (34%), Gaps = 28/170 (16%)

Query: 15  SDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRV 74
             L    P+LE LN++ N+    +P        L  L+   N  + +VP L     L+++
Sbjct: 310 RSLCDLPPSLEELNVSNNKLIE-LPALPPR---LERLIASFNHLA-EVPEL--PQNLKQL 362

Query: 75  IISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAE 134
            +  N L         EF +   +   L +     N+    +PE   N    L  L V  
Sbjct: 363 HVEYNPL--------REFPDIPESVEDLRM-----NSHLAEVPELPQN----LKQLHVET 405

Query: 135 NQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNK 184
           N L    P    ++ +L    ++  +       +     KL+      + 
Sbjct: 406 NPL-REFPDIPESVEDL---RMNSERVVDPYEFAHETTDKLEDDVFEHHH 451

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 67.6 bits (165), Expect = 4e-13
 Identities = 49/291 (16%), Positives = 105/291 (36%), Gaps = 42/291 (14%)

Query: 3   DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNA----SNLRELMIGKNGF 58
            F  N L     +     L +L+  N+  N       ++  +       L  + +     
Sbjct: 202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET 261

Query: 59  SGK----VPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGG 114
           + K    +        ++ + I    +    +++   +  + + +  L +  + +  F  
Sbjct: 262 TWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKS--LMIEHVKNQVFL- 318

Query: 115 MLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQK 174
              EA+ +    + I  ++ +           +  +   L+ + N FT  +      L++
Sbjct: 319 FSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKR 378

Query: 175 LQMLGLNGNKF-----LGEIPSSIGNLTL----------------------LMTLNFAEN 207
           LQ L L  N       +  +  ++ +L                        ++ LN + N
Sbjct: 379 LQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438

Query: 208 MLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
           ML GS+   L     + VLDL+NN +  +IP +V  L +L   L+++ NQL
Sbjct: 439 MLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQ-ELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 54.5 bits (131), Expect = 1e-08
 Identities = 47/208 (22%), Positives = 81/208 (38%), Gaps = 14/208 (6%)

Query: 3   DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKV 62
                         L      +    L+ +       V   + S+   L   +N F+  V
Sbjct: 311 HVKNQVFL-FSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSV 369

Query: 63  PS-LENLHKLQRVIISQNHLGNYGEKDNLEFV-NSLVNASRLELLQISDNNFGGMLPEAV 120
                 L +LQ +I+ +N L       N   V     N S LE L +S N+      +  
Sbjct: 370 FQGCSTLKRLQTLILQRNGL------KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT 423

Query: 121 GNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGL 180
             ++  + +L+++ N L G++   L     +++LDL  N+  S IP  +  LQ LQ L +
Sbjct: 424 CAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIMS-IPKDVTHLQALQELNV 480

Query: 181 NGNKFLGEIPSSI-GNLTLLMTLNFAEN 207
             N+ L  +P  +   LT L  +   +N
Sbjct: 481 ASNQ-LKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 53.3 bits (128), Expect = 2e-08
 Identities = 32/180 (17%), Positives = 68/180 (37%), Gaps = 8/180 (4%)

Query: 6   FNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSL 65
            +     +      +  +   LN   N FT  +    S    L+ L++ +NG        
Sbjct: 338 ISDTP-FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVA 396

Query: 66  ENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFST 125
                +  +      L +    ++  +  +   A  + +L +S N   G +         
Sbjct: 397 LMTKNMSSLETLDVSLNSL---NSHAYDRTCAWAESILVLNLSSNMLTGSVFR---CLPP 450

Query: 126 RLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKF 185
           ++ +L +  N++  +IP  + +L  L+ L+++ NQ  S   G    L  LQ + L+ N +
Sbjct: 451 KVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 50.3 bits (120), Expect = 3e-07
 Identities = 31/139 (22%), Positives = 49/139 (35%), Gaps = 6/139 (4%)

Query: 122 NFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLN 181
           +   R   LS+++N +       +  L  L +L LS N+  S         Q L+ L ++
Sbjct: 49  DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108

Query: 182 GNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSS--LGKCQNLIVLDLYNNNLSGTIPS 239
            N+ L  I      +  L  L+ + N  +  +P     G    L  L L           
Sbjct: 109 HNR-LQNISC--CPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLL 164

Query: 240 EVIGLSSLSIYLDLSQNQL 258
            V  L    I LDL    +
Sbjct: 165 PVAHLHLSCILLDLVSYHI 183

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.1 bits (117), Expect = 5e-07
 Identities = 47/161 (29%), Positives = 72/161 (44%), Gaps = 8/161 (4%)

Query: 100 SRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGN 159
           S L +L++S N     L   V  F+  L  L V+ N+L  NI      + +L  LDLS N
Sbjct: 76  SELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRL-QNISCC--PMASLRHLDLSFN 131

Query: 160 QFTS-RIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTL-LMTLNFAENMLEGSIPSSL 217
            F    +    G+L KL  LGL+  KF       + +L L  + L+     ++G    SL
Sbjct: 132 DFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESL 191

Query: 218 GKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
            +  N  VL L  +  S       + +++L  +L LS  +L
Sbjct: 192 -QIPNTTVLHLVFHPNSLFSVQVNMSVNALG-HLQLSNIKL 230

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.0 bits (109), Expect = 6e-06
 Identities = 43/285 (15%), Positives = 89/285 (31%), Gaps = 38/285 (13%)

Query: 7   NQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFS------- 59
           N+++ SL   +     +LE L+++ N+      +S    ++LR L +  N F        
Sbjct: 86  NRIR-SLDFHVFLFNQDLEYLDVSHNRLQN---ISCCPMASLRHLDLSFNDFDVLPVCKE 141

Query: 60  -GKVPSLENLH----KLQRV----------IISQNHLGNYGEKDNLEFVNSLVNASRLEL 104
            G +  L  L     K +++                L +Y  K        + N + L L
Sbjct: 142 FGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHL 201

Query: 105 LQISDNNFGGMLPEAVGNF-STRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTS 163
           +   ++ F   +  +V      +L  + + +      +           LL+++     +
Sbjct: 202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET 261

Query: 164 RIPGSIGDLQKLQM----------LGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSI 213
               S+   Q              L +       E   S   L  LM  +    +   S 
Sbjct: 262 TWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSK 321

Query: 214 PSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
            +       + +  L  ++    I        S   +L+ +QN  
Sbjct: 322 EALYSVFAEMNIKMLSISDTP-FIHMVCPPSPSSFTFLNFTQNVF 365

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 66.1 bits (162), Expect = 5e-13
 Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 13/165 (7%)

Query: 102 LELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGL-RNLVNLELLDLSGNQ 160
            + L +S N    +   +  +F   L +L ++  ++   I  G  ++L +L  L L+GN 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNP 87

Query: 161 FTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSI-GNLTLLMTLNFAENMLEGSIPSS--L 217
             S   G+   L  LQ L       L  + +   G+L  L  LN A N+++ S       
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYF 145

Query: 218 GKCQNLIVLDLYNNNLSGTIPSEV----IGLSSLSIYLDLSQNQL 258
               NL  LDL +N +  +I          +  L++ LDLS N +
Sbjct: 146 SNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPM 189

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 59.6 bits (145), Expect = 1e-10
 Identities = 48/235 (20%), Positives = 83/235 (35%), Gaps = 46/235 (19%)

Query: 6   FNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSI-SNASNLRELMIGKNGFSGKVPS 64
           FN L+  L S   F+ P L+ L+L+  +    I      + S+L  L++  N     +  
Sbjct: 37  FNPLR-HLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQ-SLAL 93

Query: 65  --LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGN 122
                L  LQ+++  + +L +                       + +   G +       
Sbjct: 94  GAFSGLSSLQKLVAVETNLAS-----------------------LENFPIGHL------- 123

Query: 123 FSTRLGILSVAENQLFGNIPSG--LRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQM--- 177
               L  L+VA N +  +        NL NLE LDLS N+  S     +  L ++ +   
Sbjct: 124 --KTLKELNVAHNLI-QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180

Query: 178 -LGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNN 231
            L L+ N  +  I         L  L    N L+        +  +L  + L+ N
Sbjct: 181 SLDLSLNP-MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 59.2 bits (144), Expect = 1e-10
 Identities = 43/198 (21%), Positives = 82/198 (41%), Gaps = 21/198 (10%)

Query: 67  NLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTR 126
           +  +LQ + +S+  +        +E   +  + S L  L ++ N     L     +  + 
Sbjct: 50  SFPELQVLDLSRCEI------QTIE-DGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSS 101

Query: 127 LGILSVAENQLFGNIPSGL-RNLVNLELLDLSGNQFTS-RIPGSIGDLQKLQMLGLNGNK 184
           L  L   E  L  ++ +    +L  L+ L+++ N   S ++P    +L  L+ L L+ NK
Sbjct: 102 LQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160

Query: 185 FLGEIPSSI----GNLTLL-MTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPS 239
            +  I  +       + LL ++L+ + N +   I     K   L  L L  N L  ++P 
Sbjct: 161 -IQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SVPD 217

Query: 240 EVI-GLSSLSIYLDLSQN 256
            +   L+SL   + L  N
Sbjct: 218 GIFDRLTSLQ-KIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 59.2 bits (144), Expect = 1e-10
 Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 9/121 (7%)

Query: 141 IPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSI-GNLTLL 199
           IP  L    + + LDLS N        S     +LQ+L L+  + +  I      +L+ L
Sbjct: 22  IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHL 78

Query: 200 MTLNFAENMLEGSIPSSL-GKCQNLIVLDLYNNNLSGTIPSEVI-GLSSLSIYLDLSQNQ 257
            TL    N ++ S+         +L  L     NL+ ++ +  I  L +L   L+++ N 
Sbjct: 79  STLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLK-ELNVAHNL 135

Query: 258 L 258
           +
Sbjct: 136 I 136

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.4 bits (160), Expect = 5e-13
 Identities = 28/171 (16%), Positives = 56/171 (32%), Gaps = 8/171 (4%)

Query: 94  NSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSG-LRNLVNLE 152
           ++  N   +  + +S +     L        +++  + +   +    I    L+ L  L+
Sbjct: 49  HAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108

Query: 153 LLDLSGNQFTSRIPG--SIGDLQKLQMLGLNGNKFLGEIPS-SIGNLT-LLMTLNFAENM 208
            L +         P    +       +L +  N ++  IP  +   L    +TL    N 
Sbjct: 109 FLGIFNTGLKM-FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG 167

Query: 209 LEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEV-IGLSSLSIYLDLSQNQL 258
              S+         L  + L  N     I  +   G+ S    LD+SQ  +
Sbjct: 168 FT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 62.7 bits (153), Expect = 5e-12
 Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 8/146 (5%)

Query: 119 AVGNFSTRLGILSVAENQLFGNIPSG-LRNLVNLELLDLSGNQFTSRIP-GSIGDLQKLQ 176
            + +       L + E  L   IPS    NL N+  + +S +    ++   S  +L K+ 
Sbjct: 25  RIPSLPPSTQTLKLIETHL-RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVT 83

Query: 177 MLGLNGNKFLGEIPSSI-GNLTLLMTLNFAENMLEGSIP--SSLGKCQNLIVLDLYNNNL 233
            + +   + L  I       L LL  L      L+   P  + +       +L++ +N  
Sbjct: 84  HIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPY 142

Query: 234 SGTIPSEVI-GLSSLSIYLDLSQNQL 258
             +IP     GL + ++ L L  N  
Sbjct: 143 MTSIPVNAFQGLCNETLTLKLYNNGF 168

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 57.7 bits (140), Expect = 3e-10
 Identities = 45/219 (20%), Positives = 80/219 (36%), Gaps = 19/219 (8%)

Query: 21  LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS--LENLHKLQRVIISQ 78
            P+ + L L           + SN  N+  + +  +    ++ S    NL K+  + I  
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 79  NHLGNYGEKDNLEFVNSLV--NASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQ 136
                     NL +++         L+ L I +              +    IL + +N 
Sbjct: 90  TR--------NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNP 141

Query: 137 LFGNIPSG-LRNLVN-LELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSI- 193
              +IP    + L N    L L  N FTS + G   +  KL  + LN NK+L  I     
Sbjct: 142 YMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLNKNKYLTVIDKDAF 200

Query: 194 -GNLTLLMTLNFAENMLEGSIPS-SLGKCQNLIVLDLYN 230
            G  +    L+ ++  +  ++PS  L   + LI  + + 
Sbjct: 201 GGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNTWT 238

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 65.5 bits (160), Expect = 1e-12
 Identities = 49/238 (20%), Positives = 97/238 (40%), Gaps = 26/238 (10%)

Query: 21  LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNH 80
           L N   +    +  T  +    ++   +  L     G +  +  ++ L+ L  + +  N 
Sbjct: 18  LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDNQ 74

Query: 81  LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGN 140
           + +         +  L N +++  L++S N    +   A+      +  L +   Q+   
Sbjct: 75  ITD---------LAPLKNLTKITELELSGNPLKNV--SAIAGL-QSIKTLDLTSTQI--T 120

Query: 141 IPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLM 200
             + L  L NL++L L  NQ T+  P  +  L  LQ L +   + + ++ + + NL+ L 
Sbjct: 121 DVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQ-VSDL-TPLANLSKLT 176

Query: 201 TLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
           TL   +N +     S L    NLI + L NN +S    S +   S+L   + L+   +
Sbjct: 177 TLKADDNKISDI--SPLASLPNLIEVHLKNNQISDV--SPLANTSNLF-IVTLTNQTI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 64.7 bits (158), Expect = 2e-12
 Identities = 49/238 (20%), Positives = 94/238 (39%), Gaps = 23/238 (9%)

Query: 21  LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNH 80
           L  +  L+  G   T      +   +NL  L +  N  +  +  L+NL K+  + +S N 
Sbjct: 40  LDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQIT-DLAPLKNLTKITELELSGNP 96

Query: 81  LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGN 140
           L       N+  +  L +   ++ L ++      +    +    + L +L +  NQ+   
Sbjct: 97  L------KNVSAIAGLQS---IKTLDLTSTQITDV--TPLAGL-SNLQVLYLDLNQI--T 142

Query: 141 IPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLM 200
             S L  L NL+ L +   Q +   P  + +L KL  L  + NK + +I S + +L  L+
Sbjct: 143 NISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK-ISDI-SPLASLPNLI 198

Query: 201 TLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
            ++   N +     S L    NL ++ L N  ++         L   ++    S   +
Sbjct: 199 EVHLKNNQISDV--SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPI 254

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.8 bits (140), Expect = 4e-10
 Identities = 43/207 (20%), Positives = 84/207 (40%), Gaps = 27/207 (13%)

Query: 65  LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLV-------------NASRLELLQISDNN 111
              L    ++   ++++ +   + +L+ + +L                + L  L++ DN 
Sbjct: 15  DPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQ 74

Query: 112 FGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGD 171
              +    + N  T++  L ++ N L     S +  L +++ LDL+  Q T   P  +  
Sbjct: 75  ITDL--APLKNL-TKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP--LAG 127

Query: 172 LQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNN 231
           L  LQ+L L+ N+ +  I S +  LT L  L+     +     + L     L  L   +N
Sbjct: 128 LSNLQVLYLDLNQ-ITNI-SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDN 183

Query: 232 NLSGTIPSEVIGLSSLSIYLDLSQNQL 258
            +S    S +  L +L   + L  NQ+
Sbjct: 184 KISDI--SPLASLPNLI-EVHLKNNQI 207

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 37/183 (20%), Positives = 73/183 (39%), Gaps = 19/183 (10%)

Query: 21  LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNH 80
           L +++ L+L   Q T   P  ++  SNL+ L +  N  +  +  L  L  LQ + I    
Sbjct: 106 LQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQIT-NISPLAGLTNLQYLSIGNAQ 162

Query: 81  LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGN 140
           + +         +  L N S+L  L+  DN    +    + +    L  + +  NQ+  +
Sbjct: 163 VSD---------LTPLANLSKLTTLKADDNKISDI--SPLASL-PNLIEVHLKNNQI--S 208

Query: 141 IPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLM 200
             S L N  NL ++ L+    T++      +L    ++       +   P++I +     
Sbjct: 209 DVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPI--APATISDNGTYA 266

Query: 201 TLN 203
           + N
Sbjct: 267 SPN 269

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.8 bits (101), Expect = 5e-05
 Identities = 25/116 (21%), Positives = 42/116 (36%), Gaps = 9/116 (7%)

Query: 143 SGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTL 202
                L N   +    +  T  +     DL  +  L   G   +  I   +  L  L+ L
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTG-VTTI-EGVQYLNNLIGL 68

Query: 203 NFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
              +N +  +  + L     +  L+L  N L     S + GL S+   LDL+  Q+
Sbjct: 69  ELKDNQI--TDLAPLKNLTKITELELSGNPL--KNVSAIAGLQSI-KTLDLTSTQI 119

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 64.1 bits (156), Expect = 4e-12
 Identities = 46/227 (20%), Positives = 82/227 (36%), Gaps = 20/227 (8%)

Query: 12  SLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS--LENLH 69
            +PSDL     N   L     +       + S   +L ++ I +N     + +    NL 
Sbjct: 23  EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP 79

Query: 70  KLQRVIISQNHLGNYGEKDNLEFV--NSLVNASRLELLQISDNNFGGMLPEAVGNFSTRL 127
           KL  + I +         +NL ++   +  N   L+ L IS+      LP+     S + 
Sbjct: 80  KLHEIRIEKA--------NNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQK 130

Query: 128 GILSVAENQLFGNIPSG-LRNL-VNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKF 185
            +L + +N     I       L     +L L+ N     I  S  +  +L  L L+ N  
Sbjct: 131 VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNN 189

Query: 186 LGEIPSSI-GNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNN 231
           L E+P+ +    +  + L+ +   +       L   + L     YN 
Sbjct: 190 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 61.4 bits (149), Expect = 4e-11
 Identities = 35/169 (20%), Positives = 67/169 (39%), Gaps = 6/169 (3%)

Query: 94  NSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSG-LRNLVNLE 152
            +      LE ++IS N+   ++   V +   +L  + + +      I     +NL NL+
Sbjct: 48  GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ 107

Query: 153 LLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPS-SIGNLT-LLMTLNFAENMLE 210
            L +S                +  +L +  N  +  I   S   L+   + L   +N ++
Sbjct: 108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167

Query: 211 GSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVI-GLSSLSIYLDLSQNQL 258
               S+    Q   +    NNNL   +P++V  G S   I LD+S+ ++
Sbjct: 168 EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVI-LDISRTRI 214

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.4 bits (131), Expect = 8e-09
 Identities = 40/223 (17%), Positives = 76/223 (34%), Gaps = 28/223 (12%)

Query: 3   DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSI-SNASNLRELMIGKNGFSGK 61
            F   +L+  +         +LE + ++ N     I   + SN   L E+ I K      
Sbjct: 36  RFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY 94

Query: 62  VPS--LENLHKLQRVIISQNHLGN--YGEKDNLEFVNSLVNASRLELLQISDNNFGGM-- 115
           +     +NL  LQ ++IS   + +     K +      L     + +  I  N+F G+  
Sbjct: 95  INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF 154

Query: 116 --------------LPEAVGNFSTRLGILSVAENQLFGNIPSG-LRNLVNLELLDLSGNQ 160
                         +  +  N +    +     N L   +P+          +LD+S  +
Sbjct: 155 ESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNL-EELPNDVFHGASGPVILDISRTR 213

Query: 161 FTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLN 203
             S     + +L+KL+       K L     ++  L  LM  +
Sbjct: 214 IHSLPSYGLENLKKLRARSTYNLKKLP----TLEKLVALMEAS 252

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 63.7 bits (155), Expect = 8e-12
 Identities = 40/246 (16%), Positives = 74/246 (30%), Gaps = 15/246 (6%)

Query: 21  LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNH 80
             N E   +          + +SN   + E        S       N       + +   
Sbjct: 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIET 232

Query: 81  LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFS----TRLGILSVAENQ 136
             N     +   +  LV  + +    IS+    G L     ++S      L I  V  + 
Sbjct: 233 TWN-----SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV 287

Query: 137 LFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNL 196
                        N+ + + + +            +     L  + N     +  + G+L
Sbjct: 288 FGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHL 347

Query: 197 TLLMTLNFAENMLEGSIPSSLG---KCQNLIVLDLYNNNLSGTIPSEVI-GLSSLSIYLD 252
           T L TL    N L+  +        + ++L  LD+  N++S            SL   L+
Sbjct: 348 TELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL-SLN 405

Query: 253 LSQNQL 258
           +S N L
Sbjct: 406 MSSNIL 411

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 56.0 bits (135), Expect = 3e-09
 Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 4/138 (2%)

Query: 122 NFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLN 181
           + S +  IL++++N +     S + +L  L +L +S N+            Q+L+ L L+
Sbjct: 18  DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77

Query: 182 GNKFLGEIPSSIGNLTLLMTLNFAENMLEG-SIPSSLGKCQNLIVLDLYNNNLSGTIPSE 240
            NK L +I         L  L+ + N  +   I    G    L  L L   +L  +    
Sbjct: 78  HNK-LVKISC--HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLP 134

Query: 241 VIGLSSLSIYLDLSQNQL 258
           +  L+   + L L +   
Sbjct: 135 IAHLNISKVLLVLGETYG 152

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.9 bits (132), Expect = 6e-09
 Identities = 44/241 (18%), Positives = 84/241 (34%), Gaps = 18/241 (7%)

Query: 23  NLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSL-ENLHKLQRVIISQNHL 81
           ++  + L G         S ++   L    +  + F      + E    +     + +  
Sbjct: 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT 312

Query: 82  GNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQL--FG 139
                   +  +      S    L  S+N     + E  G+  T L  L +  NQL    
Sbjct: 313 -------RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHL-TELETLILQMNQLKELS 364

Query: 140 NIPSGLRNLVNLELLDLSGNQFTSRIPGSIGD-LQKLQMLGLNGNKFLGEIPSSIGNLTL 198
            I      + +L+ LD+S N  +           + L  L ++ N     I   +     
Sbjct: 365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPR 422

Query: 199 LMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVI-GLSSLSIYLDLSQNQ 257
           +  L+   N ++ SIP  + K + L  L++ +N L  ++P  +   L+SL   + L  N 
Sbjct: 423 IKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQ-KIWLHTNP 479

Query: 258 L 258
            
Sbjct: 480 W 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.5 bits (131), Expect = 9e-09
 Identities = 30/119 (25%), Positives = 45/119 (37%), Gaps = 7/119 (5%)

Query: 141 IPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLM 200
           +P  L       +L++S N  +      I  L KL++L ++ N+      S       L 
Sbjct: 15  VPKDL--SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE 72

Query: 201 TLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIG-LSSLSIYLDLSQNQL 258
            L+ + N L   I        NL  LDL  N        +  G +S L  +L LS   L
Sbjct: 73  YLDLSHNKLV-KISC--HPTVNLKHLDLSFNAFDALPICKEFGNMSQLK-FLGLSTTHL 127

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.9 bits (127), Expect = 3e-08
 Identities = 35/183 (19%), Positives = 72/183 (39%), Gaps = 16/183 (8%)

Query: 7   NQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFS---GKVP 63
           +  +  +       +     L+ + N  T  +  +  + + L  L++  N          
Sbjct: 310 SGTR-MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAE 368

Query: 64  SLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAV-GN 122
               +  LQ++ ISQN +    +K +    +   +   L  L +S N     L + +   
Sbjct: 369 MTTQMKSLQQLDISQNSVSYDEKKGDC---SWTKS---LLSLNMSSNI----LTDTIFRC 418

Query: 123 FSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNG 182
              R+ +L +  N++  +IP  +  L  L+ L+++ NQ  S   G    L  LQ + L+ 
Sbjct: 419 LPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHT 477

Query: 183 NKF 185
           N +
Sbjct: 478 NPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.9 bits (101), Expect = 5e-05
 Identities = 40/227 (17%), Positives = 72/227 (31%), Gaps = 40/227 (17%)

Query: 12  SLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSG-KVPSLENLHK 70
            +P DL         LN++ N  +      I + S LR L+I  N      +   +   +
Sbjct: 14  HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQE 70

Query: 71  LQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGIL 130
           L+ + +S N L        +   +  VN   L+ L +S N F                  
Sbjct: 71  LEYLDLSHNKLVK------ISC-HPTVN---LKHLDLSFNAF-----------------D 103

Query: 131 SVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIP 190
           ++   + FGN       +  L+ L LS           I  L   ++L + G  +  +  
Sbjct: 104 ALPICKEFGN-------MSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKE- 155

Query: 191 SSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTI 237
                L    T +             +       V +L  +N+   +
Sbjct: 156 -DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVL 201

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 62.3 bits (152), Expect = 1e-11
 Identities = 51/160 (31%), Positives = 66/160 (41%), Gaps = 8/160 (5%)

Query: 100 SRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGL-RNLVNLELLDLSG 158
           ++L LL ++DN     LP  +      L  L V +N+L   +P G+   LVNL  L L  
Sbjct: 61  TKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL-QALPIGVFDQLVNLAELRLDR 118

Query: 159 NQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSI-GNLTLLMTLNFAENMLEGSIPSSL 217
           NQ  S  P     L KL  L L  N+ L  +P  +   LT L  L    N L+  +P   
Sbjct: 119 NQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGA 176

Query: 218 -GKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQN 256
             K   L  L L NN L          L  L   L L +N
Sbjct: 177 FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK-MLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.8 bits (143), Expect = 2e-10
 Identities = 39/133 (29%), Positives = 56/133 (42%), Gaps = 7/133 (5%)

Query: 129 ILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGE 188
            L +  N+L          L  L LL L+ N+  +   G   +L+ L+ L +  NK L  
Sbjct: 41  KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQA 99

Query: 189 IPSSI-GNLTLLMTLNFAENMLEGSIPSSL-GKCQNLIVLDLYNNNLSGTIPSEVI-GLS 245
           +P  +   L  L  L    N L+ S+P  +      L  L L  N L  ++P  V   L+
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLT 157

Query: 246 SLSIYLDLSQNQL 258
           SL   L L  NQL
Sbjct: 158 SLK-ELRLYNNQL 169

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 57.3 bits (139), Expect = 6e-10
 Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 9/121 (7%)

Query: 141 IPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSI-GNLTLL 199
           IPS +    + + LDL  N+ +S    +   L KL++L LN NK L  +P+ I   L  L
Sbjct: 31  IPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNL 87

Query: 200 MTLNFAENMLEGSIPSSL-GKCQNLIVLDLYNNNLSGTIPSEV-IGLSSLSIYLDLSQNQ 257
            TL   +N L+ ++P  +  +  NL  L L  N L  ++P  V   L+ L+ YL L  N+
Sbjct: 88  ETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLT-YLSLGYNE 144

Query: 258 L 258
           L
Sbjct: 145 L 145

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 54.2 bits (131), Expect = 7e-09
 Identities = 50/206 (24%), Positives = 77/206 (37%), Gaps = 42/206 (20%)

Query: 7   NQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSI-SNASNLRELMIGKNGFSGKVPS- 64
           N+L  SLPS     L  L  L L  N+    +P  I     NL  L +  N     +P  
Sbjct: 47  NKLS-SLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQ-ALPIG 103

Query: 65  -LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNF 123
             + L  L  + + +N L +                       +    F  +        
Sbjct: 104 VFDQLVNLAELRLDRNQLKS-----------------------LPPRVFDSL-------- 132

Query: 124 STRLGILSVAENQLFGNIPSGL-RNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNG 182
            T+L  LS+  N+L  ++P G+   L +L+ L L  NQ      G+   L +L+ L L+ 
Sbjct: 133 -TKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN 190

Query: 183 NKFLGEIPSSI-GNLTLLMTLNFAEN 207
           N+ L  +P     +L  L  L   EN
Sbjct: 191 NQ-LKRVPEGAFDSLEKLKMLQLQEN 215

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 62.8 bits (153), Expect = 1e-11
 Identities = 44/227 (19%), Positives = 93/227 (40%), Gaps = 23/227 (10%)

Query: 21  LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNH 80
                  NL     T  +    +  +++ +++   +     V  ++ L  + ++ ++ N 
Sbjct: 23  FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQGIQYLPNVTKLFLNGNK 79

Query: 81  LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGN 140
           L       +++ + +L N   L  L + +N    +   ++ +   +L  LS+  N +  +
Sbjct: 80  L------TDIKPLANLKN---LGWLFLDENKVKDL--SSLKDL-KKLKSLSLEHNGI--S 125

Query: 141 IPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLM 200
             +GL +L  LE L L  N+ T      +  L KL  L L  N+ + +I   +  LT L 
Sbjct: 126 DINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQ-ISDI-VPLAGLTKLQ 181

Query: 201 TLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSL 247
            L  ++N +   +  +L   +NL VL+L++        +    L   
Sbjct: 182 NLYLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVP 226

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.8 bits (148), Expect = 4e-11
 Identities = 48/217 (22%), Positives = 93/217 (42%), Gaps = 24/217 (11%)

Query: 42  ISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASR 101
               +   +  + K   +    +   L+ + ++I + + +       +++ +  L N   
Sbjct: 20  DDAFAETIKDNLKKKSVT-DAVTQNELNSIDQIIANNSDI------KSVQGIQYLPN--- 69

Query: 102 LELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQF 161
           +  L ++ N    + P  + N    LG L + EN++     S L++L  L+ L L  N  
Sbjct: 70  VTKLFLNGNKLTDIKP--LANL-KNLGWLFLDENKV--KDLSSLKDLKKLKSLSLEHNGI 124

Query: 162 TSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQ 221
           +  I G +  L +L+ L L  NK + +I + +  LT L TL+  +N +   I   L    
Sbjct: 125 SD-ING-LVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQIS-DI-VPLAGLT 178

Query: 222 NLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
            L  L L  N++S      + GL +L + L+L   + 
Sbjct: 179 KLQNLYLSKNHISDL--RALAGLKNLDV-LELFSQEC 212

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 39/200 (19%), Positives = 87/200 (43%), Gaps = 27/200 (13%)

Query: 61  KVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAV 120
           ++ S +   +  +  + +  +       +    N L +   ++ +  ++++   +  + +
Sbjct: 16  QIFSDDAFAETIKDNLKKKSV------TDAVTQNELNS---IDQIIANNSDIKSV--QGI 64

Query: 121 GNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGL 180
                 +  L +  N+L  +I   L NL NL  L L  N+    +   + DL+KL+ L L
Sbjct: 65  QYL-PNVTKLFLNGNKL-TDI-KPLANLKNLGWLFLDENKVKD-LSS-LKDLKKLKSLSL 119

Query: 181 NGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSE 240
             N  + +I + + +L  L +L    N +  +  + L +   L  L L +N +     S+
Sbjct: 120 EHNG-ISDI-NGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQI-----SD 170

Query: 241 VIGLSSLS--IYLDLSQNQL 258
           ++ L+ L+    L LS+N +
Sbjct: 171 IVPLAGLTKLQNLYLSKNHI 190

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 41/205 (20%), Positives = 82/205 (40%), Gaps = 27/205 (13%)

Query: 21  LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNH 80
           LPN+  L L GN+ T   P  ++N  NL  L + +N     + SL++L KL+ + +  N 
Sbjct: 67  LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSSLKDLKKLKSLSLEHNG 123

Query: 81  LGN-------------YGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFS--T 125
           + +             Y   + +  +  L   ++L+ L + DN         +   +  T
Sbjct: 124 ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQI-----SDIVPLAGLT 178

Query: 126 RLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKF 185
           +L  L +++N +  +    L  L NL++L+L   +  ++      +L     +       
Sbjct: 179 KLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

Query: 186 LGEIPSSIGNLTLLMTLNFAENMLE 210
           +   P  I +       N   ++ E
Sbjct: 237 VT--PEIISDDGDYEKPNVKWHLPE 259

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 62.2 bits (151), Expect = 1e-11
 Identities = 40/224 (17%), Positives = 62/224 (27%), Gaps = 23/224 (10%)

Query: 39  PVSISNASNLRELMIGKNGFSGK----VPSLENLHKLQRVIISQNHLGNYGEKDNLEFVN 94
              I  + +L+ L +       +       +  +  LQ + +    +        LE   
Sbjct: 61  FTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG 120

Query: 95  SLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELL 154
             +N   L L  +S       L E        L +LS+A+          +R    L  L
Sbjct: 121 PDLNI--LNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTL 178

Query: 155 DLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIP 214
           DLS N                              P     L +L   N       G   
Sbjct: 179 DLSDNPELGERG-----------------LISALCPLKFPTLQVLALRNAGMETPSGVCS 221

Query: 215 SSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
           +       L  LDL +N+L     +      S    L+LS   L
Sbjct: 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.1 bits (148), Expect = 4e-11
 Identities = 50/248 (20%), Positives = 81/248 (32%), Gaps = 20/248 (8%)

Query: 23  NLEGLNLAGNQFTGPIPVSIS---NASNLRELMIGKNGFSGKVP-SLENLHKLQRVIISQ 78
           +L+ L +   +    I          S L+EL +     +G  P  L         I++ 
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 79  NHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLF 138
            ++        L  +   +    L++L I+  +      E V  F   L  L +++N   
Sbjct: 129 RNVSWATRDAWLAELQQWLKPG-LKVLSIAQAHSLNFSCEQVRVFPA-LSTLDLSDNPEL 186

Query: 139 GNI-------PSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPS 191
           G         P     L  L L +      +           +LQ L L+ N       +
Sbjct: 187 GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246

Query: 192 SI-GNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIY 250
                 + L +LN +   L+  +P  L     L VLDL  N L    PS    L  +   
Sbjct: 247 PSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLD-RNPSP-DELPQVG-N 300

Query: 251 LDLSQNQL 258
           L L  N  
Sbjct: 301 LSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.1 bits (148), Expect = 4e-11
 Identities = 37/187 (19%), Positives = 67/187 (35%), Gaps = 14/187 (7%)

Query: 6   FNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSL 65
           +      L     +  P L+ L++A           +     L  L +  N   G+   +
Sbjct: 133 WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192

Query: 66  E-----NLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAV 120
                     LQ + +    +    E  +           +L+ L +S N+         
Sbjct: 193 SALCPLKFPTLQVLALRNAGM----ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248

Query: 121 GNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGL 180
            ++ ++L  L+++   L   +P GL     L +LDLS N+     P S  +L ++  L L
Sbjct: 249 CDWPSQLNSLNLSFTGL-KQVPKGL--PAKLSVLDLSYNRLDR-NP-SPDELPQVGNLSL 303

Query: 181 NGNKFLG 187
            GN FL 
Sbjct: 304 KGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 55.3 bits (133), Expect = 4e-09
 Identities = 47/231 (20%), Positives = 79/231 (34%), Gaps = 26/231 (11%)

Query: 19  FTLPNLEGLNLAGNQFTGPIPVSISNAS--NLRELMIGKNGFSGKVPSLENLH-----KL 71
             +  L+ L L   + TG  P  +  A+  +L  L +    ++ +   L  L       L
Sbjct: 92  LGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGL 151

Query: 72  QRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGG---MLPEAVGNFSTRLG 128
           + + I+Q H  N+           +     L  L +SDN   G   ++          L 
Sbjct: 152 KVLSIAQAHSLNFS-------CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQ 204

Query: 129 ILSVAENQ---LFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGD-LQKLQMLGLNGNK 184
           +L++         G   +     V L+ LDLS N           D   +L  L L+   
Sbjct: 205 VLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264

Query: 185 FLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSG 235
            L ++P  +     L  L+ + N L+   PS       +  L L  N    
Sbjct: 265 -LKQVPKGL--PAKLSVLDLSYNRLD-RNPSPDE-LPQVGNLSLKGNPFLD 310

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 61.3 bits (149), Expect = 2e-11
 Identities = 44/140 (31%), Positives = 58/140 (41%), Gaps = 15/140 (10%)

Query: 97  VNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGL-RNLVNLELLD 155
            NA  L L     +N    L   V +    L  L +  NQL G +P G+  +L  L +LD
Sbjct: 40  TNAQILYL----HDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLD 94

Query: 156 LSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPS 215
           L  NQ T         L  L+ L +  NK L E+P  I  LT L  L   +N L+ SIP 
Sbjct: 95  LGTNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLK-SIPH 152

Query: 216 ----SLGKCQNLIVLDLYNN 231
                L    +     L+ N
Sbjct: 153 GAFDRLSSLTHAY---LFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 52.8 bits (127), Expect = 1e-08
 Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 6/126 (4%)

Query: 129 ILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGE 188
           IL + +NQ+    P    +L+NL+ L L  NQ  +   G    L +L +L L  N+ L  
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-LTV 102

Query: 189 IPSSI-GNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVI-GLSS 246
           +PS++   L  L  L    N L   +P  + +  +L  L L  N L  +IP      LSS
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSS 160

Query: 247 LS-IYL 251
           L+  YL
Sbjct: 161 LTHAYL 166

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 61.6 bits (150), Expect = 2e-11
 Identities = 48/159 (30%), Positives = 67/159 (42%), Gaps = 11/159 (6%)

Query: 97  VNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGL-RNLVNLELLD 155
            +  +L+L     +     L +A     T+L  L++  NQL   + +G+  +L  L  L 
Sbjct: 35  ADTEKLDL----QSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLG 89

Query: 156 LSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSI-GNLTLLMTLNFAENMLEGSIP 214
           L+ NQ  S   G    L +L  L L GN+ L  +PS +   LT L  L    N L+ SIP
Sbjct: 90  LANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQ-SIP 147

Query: 215 SSL-GKCQNLIVLDLYNNNLSGTIPSEVIGLSSLS-IYL 251
           +    K  NL  L L  N L          L  L  I L
Sbjct: 148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.2 bits (128), Expect = 1e-08
 Identities = 39/121 (32%), Positives = 56/121 (46%), Gaps = 9/121 (7%)

Query: 141 IPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSI-GNLTLL 199
           +PSG+    + E LDL      +    +   L KL  L L+ N+ L  + + +  +LT L
Sbjct: 29  VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTEL 85

Query: 200 MTLNFAENMLEGSIPSSL-GKCQNLIVLDLYNNNLSGTIPSEVI-GLSSLSIYLDLSQNQ 257
            TL  A N L  S+P  +      L  L L  N L  ++PS V   L+ L   L L+ NQ
Sbjct: 86  GTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLK-ELRLNTNQ 142

Query: 258 L 258
           L
Sbjct: 143 L 143

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 45/165 (27%), Positives = 68/165 (41%), Gaps = 19/165 (11%)

Query: 25  EGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS--LENLHKLQRVIISQNHLG 82
           E L+L           +    + L  L +  N     + +   ++L +L  + ++ N L 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQL- 95

Query: 83  NYGEKDNLE---FVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFG 139
                 +L    F + L    +L L      N    LP  V +  T+L  L +  NQL  
Sbjct: 96  -----ASLPLGVF-DHLTQLDKLYL----GGNQLKSLPSGVFDRLTKLKELRLNTNQL-Q 144

Query: 140 NIPSGL-RNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGN 183
           +IP+G    L NL+ L LS NQ  S   G+   L KLQ + L GN
Sbjct: 145 SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 39/117 (33%), Positives = 52/117 (44%), Gaps = 10/117 (8%)

Query: 94  NSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGL-RNLVNLE 152
           + L     L L     NN    LP  V +  T+L  L +  NQL  ++PSG+   L  L+
Sbjct: 80  DDLTELGTLGL----ANNQLASLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLK 134

Query: 153 LLDLSGNQFTSRIPGSIGD-LQKLQMLGLNGNKFLGEIPSSI-GNLTLLMTLNFAEN 207
            L L+ NQ  S IP    D L  LQ L L+ N+ L  +P      L  L T+    N
Sbjct: 135 ELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGN 189

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 60.5 bits (146), Expect = 1e-10
 Identities = 31/172 (18%), Positives = 63/172 (36%), Gaps = 30/172 (17%)

Query: 64  SLENLHKLQRVIISQNHLGNYGEKDNL-EFVNSLVNASRLELLQISDNNFGGMLPEAVGN 122
           +L+    L+ V   +    +      L E     +  + + +L ++  +    +   +  
Sbjct: 404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQ 461

Query: 123 FSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNG 182
               +  L ++ N+L   +P  L  L  LE+L  S N   + + G + +L +LQ L L  
Sbjct: 462 L-LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VDG-VANLPRLQELLLCN 517

Query: 183 NKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLS 234
           N+        +     +                 L  C  L++L+L  N+L 
Sbjct: 518 NR--------LQQSAAIQ---------------PLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.7 bits (105), Expect = 2e-05
 Identities = 35/158 (22%), Positives = 58/158 (36%), Gaps = 20/158 (12%)

Query: 22  PNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHL 81
                L+   ++F     V     +++R L +     +  +  LE L  +  + +S N L
Sbjct: 417 MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCHLEQLLLVTHLDLSHNRL 475

Query: 82  GNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFS--TRLGILSVAENQLFG 139
                        +L     LE+LQ SDN       E V   +   RL  L +  N+L  
Sbjct: 476 R--------ALPPALAALRCLEVLQASDNAL-----ENVDGVANLPRLQELLLCNNRL-Q 521

Query: 140 NIPS--GLRNLVNLELLDLSGNQFTSRIPGSIGDLQKL 175
              +   L +   L LL+L GN    +  G    L ++
Sbjct: 522 QSAAIQPLVSCPRLVLLNLQGNSLC-QEEGIQERLAEM 558

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 52/211 (24%), Positives = 87/211 (41%), Gaps = 25/211 (11%)

Query: 27  LNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGE 86
            NL     T  +    +  +++ +++   +     V  ++ L  ++ + +  N L +   
Sbjct: 24  ANLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQGIQYLPNVRYLALGGNKLHDISA 80

Query: 87  KDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLR 146
                    L N + L L      N    LP  V +  T L  L + ENQL  ++P G+ 
Sbjct: 81  LK------ELTNLTYLIL----TGNQLQSLPNGVFDKLTNLKELVLVENQL-QSLPDGVF 129

Query: 147 N-LVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSI-GNLTLLMTLNF 204
           + L NL  L+L+ NQ  S   G    L  L  L L+ N+ L  +P  +   LT L  L  
Sbjct: 130 DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRL 188

Query: 205 AENMLEGSIPS----SLGKCQNLIVLDLYNN 231
            +N L+ S+P      L   Q    + L++N
Sbjct: 189 YQNQLK-SVPDGVFDRLTSLQY---IWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 50/137 (36%), Positives = 69/137 (50%), Gaps = 9/137 (6%)

Query: 125 TRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNK 184
             +  L++  N+L  +I + L+ L NL  L L+GNQ  S   G    L  L+ L L  N+
Sbjct: 63  PNVRYLALGGNKL-HDISA-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120

Query: 185 FLGEIPSSIGN-LTLLMTLNFAENMLEGSIPSSL-GKCQNLIVLDLYNNNLSGTIPSEVI 242
            L  +P  + + LT L  LN A N L+ S+P  +  K  NL  LDL  N L  ++P  V 
Sbjct: 121 -LQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVF 177

Query: 243 G-LSSLSIYLDLSQNQL 258
             L+ L   L L QNQL
Sbjct: 178 DKLTQLK-DLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 11/141 (7%)

Query: 121 GNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGL 180
            N    +  +    + +      G++ L N+  L L GN+       ++ +L  L  L L
Sbjct: 37  QNELNSIDQIIANNSDI--KSVQGIQYLPNVRYLALGGNKLHD--ISALKELTNLTYLIL 92

Query: 181 NGNKFLGEIPSSI-GNLTLLMTLNFAENMLEGSIPSSL-GKCQNLIVLDLYNNNLSGTIP 238
            GN+ L  +P+ +   LT L  L   EN L+ S+P  +  K  NL  L+L +N L  ++P
Sbjct: 93  TGNQ-LQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ-SLP 149

Query: 239 SEVI-GLSSLSIYLDLSQNQL 258
             V   L++L+  LDLS NQL
Sbjct: 150 KGVFDKLTNLT-ELDLSYNQL 169

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 57.7 bits (140), Expect = 3e-10
 Identities = 22/135 (16%), Positives = 55/135 (40%), Gaps = 12/135 (8%)

Query: 103 ELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSG-LRNLVNLELLDLSGNQF 161
             L++++N F  +    +     +L  ++ + N++  +I  G       +  + L+ N+ 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI-TDIEEGAFEGASGVNEILLTSNRL 93

Query: 162 TSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSI-GNLTLLMTLNFAENMLEGSIP----SS 216
            +        L+ L+ L L  N+ +  + +     L+ +  L+  +N +  ++      +
Sbjct: 94  ENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDT 151

Query: 217 LGKCQNLIVLDLYNN 231
           L     L  L+L  N
Sbjct: 152 LHS---LSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 8/133 (6%)

Query: 130 LSVAENQLFGNIPSGL-RNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGE 188
           L +  N+      +G+ + L  L  ++ S N+ T    G+      +  + L  N+ L  
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR-LEN 95

Query: 189 IPSSI-GNLTLLMTLNFAENMLEGSIPS-SLGKCQNLIVLDLYNNNLSGTIPSEV-IGLS 245
           +   +   L  L TL    N +   + + S     ++ +L LY+N ++ T+       L 
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLH 153

Query: 246 SLSIYLDLSQNQL 258
           SLS  L+L  N  
Sbjct: 154 SLS-TLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 10/122 (8%)

Query: 141 IPSGLRNLVNLELLDLSGNQFTSRIP-GSIGDLQKLQMLGLNGNKFLGEIPSSI-GNLTL 198
           IP  +        L L+ N+FT     G    L +L+ +  + NK + +I        + 
Sbjct: 26  IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASG 82

Query: 199 LMTLNFAENMLEGSIPSSL-GKCQNLIVLDLYNNNLSGTIPSEV-IGLSSLSIYLDLSQN 256
           +  +    N LE ++   +    ++L  L L +N ++  + ++  IGLSS+   L L  N
Sbjct: 83  VNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVR-LLSLYDN 139

Query: 257 QL 258
           Q+
Sbjct: 140 QI 141

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 5/120 (4%)

Query: 90  LEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGL-RNL 148
           LE         +L  +  S+N     + E     ++ +  + +  N+L  N+   + + L
Sbjct: 47  LEATGIFKKLPQLRKINFSNNKITD-IEEGAFEGASGVNEILLTSNRL-ENVQHKMFKGL 104

Query: 149 VNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSI-GNLTLLMTLNFAEN 207
            +L+ L L  N+ T     S   L  +++L L  N+ +  +       L  L TLN   N
Sbjct: 105 ESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLAN 163

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 44/242 (18%), Positives = 83/242 (34%), Gaps = 34/242 (14%)

Query: 19  FTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQ 78
           F   N      A  +      +S    + L  L    +  +  +  +E L  L ++I + 
Sbjct: 15  FPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTGIEKLTGLTKLICTS 73

Query: 79  NHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLF 138
           N++              L   + L  L    N     L        T+L  L+   N+L 
Sbjct: 74  NNITTL----------DLSQNTNLTYLACDSNK----LTNLDVTPLTKLTYLNCDTNKL- 118

Query: 139 GNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTL 198
                 +     L  L+ + N  T      +    +L  L  + NK + ++   +   T 
Sbjct: 119 --TKLDVSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD--VTPQTQ 171

Query: 199 LMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLS--IYLDLSQN 256
           L TL+ + N +       + + + L  L+   NN++       + L+      +LD S N
Sbjct: 172 LTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNITK------LDLNQNIQLTFLDCSSN 222

Query: 257 QL 258
           +L
Sbjct: 223 KL 224

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.4 bits (126), Expect = 4e-08
 Identities = 47/256 (18%), Positives = 79/256 (30%), Gaps = 48/256 (18%)

Query: 21  LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNH 80
            P L  LN A N  T    + +S+ + L EL    N        +    +L  +  S N 
Sbjct: 126 NPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKI-TKLDVTPQTQLTTLDCSFNK 181

Query: 81  LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGN 140
           +              +     L  L    NN    + +   N + +L  L  + N+L   
Sbjct: 182 ITEL----------DVSQNKLLNRLNCDTNN----ITKLDLNQNIQLTFLDCSSNKL-TE 226

Query: 141 IPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQM------------------LGLNG 182
           I   +  L  L   D S N  T     ++  L  L                        G
Sbjct: 227 ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEG 284

Query: 183 NKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVI 242
            + + E+   + + T L  L+     +   +   L +   L+ L L N  L+  +   V 
Sbjct: 285 CRKIKELD--VTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELD--VS 336

Query: 243 GLSSLSIYLDLSQNQL 258
             + L   L      +
Sbjct: 337 HNTKLK-SLSCVNAHI 351

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.5 bits (116), Expect = 8e-07
 Identities = 35/238 (14%), Positives = 74/238 (31%), Gaps = 37/238 (15%)

Query: 21  LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNH 80
              L  L+ + N+ T    + ++  + L       N  +     +  L KL  +   Q  
Sbjct: 211 NIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVNPLT--ELDVSTLSKLTTLHCIQTD 265

Query: 81  LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGN 140
           L              L + ++L   Q         + E     +T+L +L      +   
Sbjct: 266 LLE----------IDLTHNTQLIYFQAEGCR---KIKELDVTHNTQLYLLDCQAAGI-TE 311

Query: 141 IPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLM 200
           +   L     L  L L+  + T  +   +    KL+ L       + +   S+G +  L 
Sbjct: 312 LD--LSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAH-IQDFS-SVGKIPALN 364

Query: 201 TLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
               AE                +    L NN+L+  +  +++      + ++     +
Sbjct: 365 NNFEAEGQT-----------ITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGV 411

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.4 bits (139), Expect = 4e-10
 Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 9/131 (6%)

Query: 130 LSVAENQLFGNIPSG-LRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGE 188
           + + +N +   IP G       L  +DLS NQ +   P +   L+ L  L L GNK + E
Sbjct: 37  IRLEQNTI-KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITE 94

Query: 189 IPSSI-GNLTLLMTLNFAENMLEGSIPS-SLGKCQNLIVLDLYNNNLSGTIPSEVI-GLS 245
           +P S+   L  L  L    N +   +   +     NL +L LY+N L  TI       L 
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLR 152

Query: 246 SLSIYLDLSQN 256
           ++   + L+QN
Sbjct: 153 AIQ-TMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.9 bits (130), Expect = 6e-09
 Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 9/121 (7%)

Query: 141 IPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSI-GNLTLL 199
           IP+ L     +  + L  N      PG+    +KL+ + L+ N+ + E+       L  L
Sbjct: 26  IPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSL 82

Query: 200 MTLNFAENMLEGSIPSSL-GKCQNLIVLDLYNNNLSGTIPSEVI-GLSSLSIYLDLSQNQ 257
            +L    N +   +P SL     +L +L L  N ++  +  +    L +L+  L L  N+
Sbjct: 83  NSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLN-LLSLYDNK 139

Query: 258 L 258
           L
Sbjct: 140 L 140

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 3/109 (2%)

Query: 100 SRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGL-RNLVNLELLDLSG 158
            +L  + +S+N     L          L  L +  N++   +P  L   L +L+LL L+ 
Sbjct: 56  KKLRRIDLSNNQISE-LAPDAFQGLRSLNSLVLYGNKI-TELPKSLFEGLFSLQLLLLNA 113

Query: 159 NQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAEN 207
           N+       +  DL  L +L L  NK       +   L  + T++ A+N
Sbjct: 114 NKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 53.9 bits (130), Expect = 4e-09
 Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 12/129 (9%)

Query: 109 DNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRN-LVNLELLDLSGNQFTSRIPG 167
           + N    LP  V +  T L  L +  N+L  ++P+G+ N L +L  L+LS NQ  S   G
Sbjct: 36  ETNSLKSLPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQLQSLPNG 94

Query: 168 SIGDLQKLQMLGLNGNKFLGEIPSSI-GNLTLLMTLNFAENMLEGSIPS----SLGKCQN 222
               L +L+ L LN N+ L  +P  +   LT L  L   +N L+ S+P      L   Q 
Sbjct: 95  VFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQY 152

Query: 223 LIVLDLYNN 231
              + L++N
Sbjct: 153 ---IWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 47.7 bits (114), Expect = 7e-07
 Identities = 40/126 (31%), Positives = 55/126 (43%), Gaps = 7/126 (5%)

Query: 130 LSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEI 189
           L +  N L          L +L  L L GN+  S   G    L  L  L L+ N+ L  +
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSL 91

Query: 190 PSSI-GNLTLLMTLNFAENMLEGSIPSSL-GKCQNLIVLDLYNNNLSGTIPSEVI-GLSS 246
           P+ +   LT L  L    N L+ S+P  +  K   L  L LY N L  ++P  V   L+S
Sbjct: 92  PNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTS 149

Query: 247 LS-IYL 251
           L  I+L
Sbjct: 150 LQYIWL 155

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 43/121 (35%), Positives = 58/121 (47%), Gaps = 9/121 (7%)

Query: 141 IPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGN-LTLL 199
           +P+G+        LDL  N   S   G   +L  L  L L GNK L  +P+ + N LT L
Sbjct: 22  VPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSL 78

Query: 200 MTLNFAENMLEGSIPSSL-GKCQNLIVLDLYNNNLSGTIPSEVIG-LSSLSIYLDLSQNQ 257
             LN + N L+ S+P+ +  K   L  L L  N L  ++P  V   L+ L   L L QNQ
Sbjct: 79  TYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLK-DLRLYQNQ 135

Query: 258 L 258
           L
Sbjct: 136 L 136

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 54.3 bits (131), Expect = 6e-09
 Identities = 40/213 (18%), Positives = 74/213 (34%), Gaps = 22/213 (10%)

Query: 21  LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNH 80
           L N    NL     T  +       S ++      +     +  ++    L+ + +S N 
Sbjct: 18  LANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SLAGMQFFTNLKELHLSHNQ 74

Query: 81  LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGN 140
           +       +L  +  L     LE L ++ N     L    G  S  L  L +  N+L   
Sbjct: 75  I------SDLSPLKDLTK---LEELSVNRNR----LKNLNGIPSACLSRLFLDNNEL--R 119

Query: 141 IPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLM 200
               L +L NLE+L +  N+  S I   +G L KL++L L+GN+ +      +  L  + 
Sbjct: 120 DTDSLIHLKNLEILSIRNNKLKS-IVM-LGFLSKLEVLDLHGNE-ITNT-GGLTRLKKVN 175

Query: 201 TLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNL 233
            ++               +      +   +   
Sbjct: 176 WIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.6 bits (124), Expect = 5e-08
 Identities = 40/193 (20%), Positives = 77/193 (39%), Gaps = 22/193 (11%)

Query: 42  ISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASR 101
               +N  +  +GK   +  + S + L  +Q      +++       +L  +    N   
Sbjct: 15  DPGLANAVKQNLGKQSVT-DLVSQKELSGVQNFNGDNSNI------QSLAGMQFFTN--- 64

Query: 102 LELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQF 161
           L+ L +S N    +    + +  T+L  LSV  N+L     +G+ +   L  L L  N+ 
Sbjct: 65  LKELHLSHNQISDL--SPLKDL-TKLEELSVNRNRL--KNLNGIPSA-CLSRLFLDNNEL 118

Query: 162 TSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQ 221
                 S+  L+ L++L +  NK L  I   +G L+ L  L+   N +  +    L + +
Sbjct: 119 RD--TDSLIHLKNLEILSIRNNK-LKSI-VMLGFLSKLEVLDLHGNEI--TNTGGLTRLK 172

Query: 222 NLIVLDLYNNNLS 234
            +  +DL      
Sbjct: 173 KVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.8 bits (122), Expect = 9e-08
 Identities = 44/200 (22%), Positives = 82/200 (41%), Gaps = 28/200 (14%)

Query: 61  KVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAV 120
           +V     L    +  + +  +       +L     L     ++     ++N   +    +
Sbjct: 11  QVFPDPGLANAVKQNLGKQSV------TDLVSQKELSG---VQNFNGDNSNIQSL--AGM 59

Query: 121 GNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGL 180
             F T L  L ++ NQ+  ++ S L++L  LE L ++ N+  + + G       L  L L
Sbjct: 60  QFF-TNLKELHLSHNQI-SDL-SPLKDLTKLEELSVNRNRLKN-LNG--IPSACLSRLFL 113

Query: 181 NGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSE 240
           + N+       S+ +L  L  L+   N L+ SI   LG    L VLDL+ N +     + 
Sbjct: 114 DNNEL--RDTDSLIHLKNLEILSIRNNKLK-SI-VMLGFLSKLEVLDLHGNEI-----TN 164

Query: 241 VIGLSSLS--IYLDLSQNQL 258
             GL+ L    ++DL+  + 
Sbjct: 165 TGGLTRLKKVNWIDLTGQKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 37/202 (18%), Positives = 80/202 (39%), Gaps = 22/202 (10%)

Query: 21  LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNH 80
           L  ++  N   +         +   +NL+EL +  N  S  +  L++L KL+ + +++N 
Sbjct: 40  LSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQIS-DLSPLKDLTKLEELSVNRNR 96

Query: 81  LGN------------YGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLG 128
           L N            + + + L   +SL++   LE+L I +N    +    +G   ++L 
Sbjct: 97  LKNLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSI--VMLGFL-SKLE 153

Query: 129 ILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGE 188
           +L +  N++      GL  L  +  +DL+G +  +       +L     +     +++  
Sbjct: 154 VLDLHGNEI--TNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWIS- 210

Query: 189 IPSSIGNLTLLMTLNFAENMLE 210
            P  I N    +       +  
Sbjct: 211 -PYYISNGGSYVDGCVLWELPV 231

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.0 bits (129), Expect = 1e-08
 Identities = 22/125 (17%), Positives = 37/125 (29%), Gaps = 27/125 (21%)

Query: 135 NQLFGNIPSGLRNLVNLELLDLSGNQFTSRIP-GSIGDLQKLQMLGLNGNKFLGEIPSSI 193
                +    L    NL  L +   Q    +    +  L +L+ L +  +  L  +    
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVA--- 72

Query: 194 GNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDL 253
                               P +      L  L+L  N L  ++  + +   SL   L L
Sbjct: 73  --------------------PDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQE-LVL 110

Query: 254 SQNQL 258
           S N L
Sbjct: 111 SGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.1 bits (106), Expect = 1e-05
 Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 2/86 (2%)

Query: 125 TRLGILSVAENQLFGNIPSG-LRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGN 183
             L  L +   Q   ++    LR L  L  L +  +      P +     +L  L L+ N
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90

Query: 184 KFLGEIPSSIGNLTLLMTLNFAENML 209
             L  +         L  L  + N L
Sbjct: 91  A-LESLSWKTVQGLSLQELVLSGNPL 115

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 9/121 (7%)

Query: 140 NIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLL 199
            + + L  L   + L LS N    +I   +  ++ L++L L  N  + +I +       L
Sbjct: 39  KMDATLSTLKACKHLALSTNNIE-KISS-LSGMENLRILSLGRNL-IKKIENLDAVADTL 95

Query: 200 MTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLS--IYLDLSQNQ 257
             L  + N +  S+ S + K  NL VL + NN ++     E+  L++L     L L+ N 
Sbjct: 96  EELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITN--WGEIDKLAALDKLEDLLLAGNP 151

Query: 258 L 258
           L
Sbjct: 152 L 152

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.7 bits (119), Expect = 9e-08
 Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 7/116 (6%)

Query: 143 SGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTL 202
           +   N V    LDL G +    I      L +   +  + N+ + ++      L  L TL
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTL 69

Query: 203 NFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLS--IYLDLSQN 256
               N +            +L  L L NN+L      ++  L+SL    YL + +N
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLVE--LGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 29/148 (19%), Positives = 51/148 (34%), Gaps = 10/148 (6%)

Query: 88  DNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRN 147
           + +E      NA R   L +       +  E +G    +   +  ++N++      G   
Sbjct: 7   ELIEQAAQYTNAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDNEI--RKLDGFPL 62

Query: 148 LVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKF--LGEIPSSIGNLTLLMTLNFA 205
           L  L+ L ++ N+      G    L  L  L L  N    LG++   + +L  L  L   
Sbjct: 63  LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCIL 121

Query: 206 EN---MLEGSIPSSLGKCQNLIVLDLYN 230
            N     +      + K   + VLD   
Sbjct: 122 RNPVTNKKHYRLYVIYKVPQVRVLDFQK 149

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 35/109 (32%), Positives = 49/109 (44%), Gaps = 12/109 (11%)

Query: 129 ILSVAENQLFGNIPSGL-RNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLG 187
            L +  N+L  ++P G+   L  L  L LS NQ  S   G    L KL +L L+ NK L 
Sbjct: 32  RLELESNKL-QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQ 89

Query: 188 EIPSSI-GNLTLLMTLNFAENMLEGSIPS----SLGKCQNLIVLDLYNN 231
            +P+ +   LT L  L    N L+ S+P      L   Q    + L+ N
Sbjct: 90  SLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQK---IWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 13/116 (11%)

Query: 140 NIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSI-GNLTL 198
            IPS      +   L+L  N+  S   G    L +L  L L+ N+ +  +P  +   LT 
Sbjct: 25  GIPS------SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTK 77

Query: 199 LMTLNFAENMLEGSIPSSL-GKCQNLIVLDLYNNNLSGTIPSEVI-GLSSLS-IYL 251
           L  L   EN L+ S+P+ +  K   L  L L  N L  ++P  +   L+SL  I+L
Sbjct: 78  LTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWL 131

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.5 bits (98), Expect = 6e-05
 Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 6/95 (6%)

Query: 116 LPEAVGNFSTRLGILSVAENQLFGNIPSGL-RNLVNLELLDLSGNQFTSRIPGSIGD-LQ 173
           LP  V +  T+L  LS+++NQ+  ++P G+   L  L +L L  N+  S +P  + D L 
Sbjct: 43  LPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKLTILYLHENKLQS-LPNGVFDKLT 100

Query: 174 KLQMLGLNGNKFLGEIPSSI-GNLTLLMTLNFAEN 207
           +L+ L L+ N+ L  +P  I   LT L  +    N
Sbjct: 101 QLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 134

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 5/99 (5%)

Query: 135 NQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSI- 193
           NQ    +P  L N  +L L+DLS N+ ++    S  ++ +L  L L+ N+ L  IP    
Sbjct: 41  NQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRTF 98

Query: 194 GNLTLLMTLNFAENMLEGSIP-SSLGKCQNLIVLDLYNN 231
             L  L  L+   N +   +P  +      L  L +  N
Sbjct: 99  DGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 14/116 (12%)

Query: 140 NIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSI-GNLTL 198
            IP       ++  L L GNQFT  +P  + + + L ++ L+ N+ +  + +    N+T 
Sbjct: 28  GIPR------DVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQ 79

Query: 199 LMTLNFAENMLEGSIPSSL-GKCQNLIVLDLYNNNLSGTIPSEVI-GLSSLS-IYL 251
           L+TL  + N L   IP       ++L +L L+ N++S  +P      LS+LS + +
Sbjct: 80  LLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAI 133

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 37/237 (15%), Positives = 70/237 (29%), Gaps = 43/237 (18%)

Query: 47  NLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQ 106
           +L+   I           L     ++ +++S N +G    +       ++ +   LE+ +
Sbjct: 10  SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAAR---WLSENIASKKDLEIAE 66

Query: 107 ISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIP 166
            SD   G +  E          +  + +          L     L  + LS N F     
Sbjct: 67  FSDIFTGRVKDEIP------EALRLLLQ---------ALLKCPKLHTVRLSDNAFGPTAQ 111

Query: 167 GSIGDL----QKLQMLGLNGN-------KFLGE------IPSSIGNLTLLMTLNFAENML 209
             + D       L+ L L+ N         +        +     N   L ++    N L
Sbjct: 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171

Query: 210 EG----SIPSSLGKCQNLIVLDLYNNNLS--GTIPSEVIGLSSLS--IYLDLSQNQL 258
           E         +    + L  + +  N +   G     + GL+       LDL  N  
Sbjct: 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 48.2 bits (115), Expect = 9e-07
 Identities = 46/259 (17%), Positives = 79/259 (30%), Gaps = 48/259 (18%)

Query: 22  PNLEGLNLAGNQFTGPIPV----------SISNASNLRELMIGKNGFSGK-----VPSLE 66
            +LE    +                    ++     L  + +  N F        +  L 
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119

Query: 67  NLHKLQRVIISQNHLGNYGEK------DNLEFVNSLVNASRLELLQISDNNFG--GM--L 116
               L+ + +  N LG             L       NA  L  +    N      M   
Sbjct: 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179

Query: 117 PEAVGNFSTRLGILSVAENQLF-----GNIPSGLRNLVNLELLDLSGNQFTSR----IPG 167
            +   +    L  + + +N +        +  GL     L++LDL  N FT      +  
Sbjct: 180 AKTFQSHRL-LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238

Query: 168 SIGDLQKLQMLGLNGN-------KFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLG-- 218
           ++     L+ LGLN           + +  S + N+ L  TL    N +E     +L   
Sbjct: 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQ-TLRLQYNEIELDAVRTLKTV 297

Query: 219 ---KCQNLIVLDLYNNNLS 234
              K  +L+ L+L  N  S
Sbjct: 298 IDEKMPDLLFLELNGNRFS 316

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 49.2 bits (116), Expect = 4e-07
 Identities = 30/174 (17%), Positives = 59/174 (33%), Gaps = 13/174 (7%)

Query: 1   DFDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSG 60
           D DF   ++      DL   L  +  LN    + T  + +      NL+ L I   G   
Sbjct: 148 DIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPD 207

Query: 61  KVP------SLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGG 114
            V        L NL KL   +  +++  +         + S      L+ L I D     
Sbjct: 208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV-FRPLFSKDRFPNLKWLGIVDAEEQN 266

Query: 115 MLPEAVGNFS--TRLGILSVAENQL----FGNIPSGLRNLVNLELLDLSGNQFT 162
           ++ E         +L  + ++   L       +   +  + +L+ +++  N  +
Sbjct: 267 VVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 48.8 bits (115), Expect = 5e-07
 Identities = 39/243 (16%), Positives = 74/243 (30%), Gaps = 41/243 (16%)

Query: 31  GNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNL 90
            +     I  +    ++   L  G   F  +  S      L  V+ +   L N   K   
Sbjct: 124 CSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN 183

Query: 91  EFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVN 150
                      L+ L+I        + E +                          +L N
Sbjct: 184 NLSIGKKPRPNLKSLEIISGGLPDSVVEDILG-----------------------SDLPN 220

Query: 151 LELLDLSGNQFTSRIPGSIGDLQ---------KLQMLGLNGNKFLGEIPSSIGN---LTL 198
           LE L L          G +   +          L+ LG+   +    +         L  
Sbjct: 221 LEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQ 280

Query: 199 LMTLNFAENMLEGS----IPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLS 254
           L T++ +  +L       +   + K ++L  +++  N LS  +  E+    SL + +D+S
Sbjct: 281 LETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKEL--QKSLPMKIDVS 338

Query: 255 QNQ 257
            +Q
Sbjct: 339 DSQ 341

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.6 bits (111), Expect = 8e-07
 Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 7/116 (6%)

Query: 144 GLRNLVNLELLDLSGNQFTS-RIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTL 202
             R   +++ L L  ++    ++ G   + ++L+ L       L  I +++  L  L  L
Sbjct: 12  RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKL 69

Query: 203 NFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLS--IYLDLSQN 256
             ++N + G +     KC NL  L+L  N +     S +  L  L     LDL   
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKD--LSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 8/138 (5%)

Query: 98  NASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLS 157
             S ++ L + ++       E + +    L  LS     L  +I + L  L  L+ L+LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-TSI-ANLPKLNKLKKLELS 72

Query: 158 GNQFTSRIPGSIGDLQKLQMLGLNGNKF--LGEIPSSIGNLTLLMTLNFAEN---MLEGS 212
            N+ +  +         L  L L+GNK   L  I   +  L  L +L+        L   
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTI-EPLKKLENLKSLDLFNCEVTNLNDY 131

Query: 213 IPSSLGKCQNLIVLDLYN 230
             +       L  LD Y+
Sbjct: 132 RENVFKLLPQLTYLDGYD 149

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 47.3 bits (113), Expect = 8e-07
 Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 11/109 (10%)

Query: 129 ILSVAENQLFGNIPSGL-RNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLG 187
            L + +N+L      GL   L +L  L+L  NQ T   P +      +Q L L  NK + 
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IK 91

Query: 188 EIPSSI-GNLTLLMTLNFAENMLEGSIPS----SLGKCQNLIVLDLYNN 231
           EI + +   L  L TLN  +N +   +       L    +   L+L +N
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTS---LNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 44.2 bits (105), Expect = 9e-06
 Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 10/116 (8%)

Query: 141 IPSGLRNLVNLELLDLSGNQFTSRIPGSIGD-LQKLQMLGLNGNKFLGEIPSSI-GNLTL 198
           IP  +   ++   L L+ N+        +   L  L  L L  N+ L  I  +     + 
Sbjct: 23  IPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASH 79

Query: 199 LMTLNFAENMLEGSIPSSL-GKCQNLIVLDLYNNNLSGTIPSEVI-GLSSLS-IYL 251
           +  L   EN ++  I + +      L  L+LY+N +S  +       L+SL+ + L
Sbjct: 80  IQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNL 133

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 48.4 bits (116), Expect = 9e-07
 Identities = 47/268 (17%), Positives = 88/268 (32%), Gaps = 60/268 (22%)

Query: 23  NLEGLNLAGNQFTGPIPVSISNA----SNLRELMIGKNGFSGK-VPSL-----ENLHKLQ 72
            LE L L     +      +++      + +EL +  N  +   V  L     ++  +L+
Sbjct: 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLE 202

Query: 73  RVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGG----MLPEAVGNFSTRLG 128
            + +    + +   +D       + + + L  L +  N  G      L   + + S+RL 
Sbjct: 203 ALKLESCGVTSDNCRD---LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR 259

Query: 129 ILSVAENQL----FGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNK 184
            L + E  +     G++   LR   +L+ L L+GN+                 LG  G +
Sbjct: 260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-----------------LGDEGAR 302

Query: 185 FLGEIPSSIGNLTLLMTLNFAENMLEG----SIPSSLGKCQNLIVLDLYNNNLSGTIPSE 240
            L E          L +L                S L + + L+ L + NN L       
Sbjct: 303 LLCETLLE--PGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA---- 356

Query: 241 VIGLSSLS----------IYLDLSQNQL 258
             G+  L             L L+   +
Sbjct: 357 --GVRELCQGLGQPGSVLRVLWLADCDV 382

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 48.4 bits (116), Expect = 9e-07
 Identities = 45/231 (19%), Positives = 73/231 (31%), Gaps = 40/231 (17%)

Query: 46  SNLRELMIGKNGFS--GKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLE 103
            +++ L I     S       L  L + Q V +    L     KD     ++L     L 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKD---ISSALRVNPALA 59

Query: 104 LLQISDNNFGG----MLPEAVGNFSTRLGILSVAENQL----FGNIPSGLRNLVNLELLD 155
            L +  N  G      + + +   S ++  LS+    L     G + S LR L  L+ L 
Sbjct: 60  ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELH 119

Query: 156 LSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLE----G 211
           LS N                  LG  G + L E          L  L      L      
Sbjct: 120 LSDNL-----------------LGDAGLQLLCEGLLD--PQCRLEKLQLEYCSLSAASCE 160

Query: 212 SIPSSLGKCQNLIVLDLYNNNLSGT---IPSEVIGLSSLSI-YLDLSQNQL 258
            + S L    +   L + NN+++     +  + +  S   +  L L    +
Sbjct: 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV 211

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 52/292 (17%), Positives = 91/292 (31%), Gaps = 38/292 (13%)

Query: 2   FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFT----GPIPVSISNASNLRELMIGKNG 57
            D    +L  +  ++L   L   + + L     T      I  ++     L EL +  N 
Sbjct: 8   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 67

Query: 58  FSGKV-----PSLENLH-KLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNN 111
                       L+    K+Q++ +    L   G        ++L     L+ L +SDN 
Sbjct: 68  LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV---LSSTLRTLPTLQELHLSDNL 124

Query: 112 FGG----MLPEAVGNFSTRLGILSVAENQL----FGNIPSGLRNLVNLELLDLSGNQFTS 163
            G     +L E + +   RL  L +    L       + S LR   + + L +S N    
Sbjct: 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 184

Query: 164 RIPGSIGDLQK-----LQMLGLNGNKF----LGEIPSSIGNLTLLMTLNFAENMLEGS-- 212
                +    K     L+ L L           ++   + +   L  L    N L     
Sbjct: 185 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 244

Query: 213 ---IPSSLGKCQNLIVLDLYNNNLS---GTIPSEVIGLSSLSIYLDLSQNQL 258
               P  L     L  L ++   ++         V+        L L+ N+L
Sbjct: 245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 47/234 (20%), Positives = 76/234 (32%), Gaps = 44/234 (18%)

Query: 23  NLEGLNLAGNQFTGPIPVSISNA----SNLRELMIGKNGFSGK------VPSLENLHKLQ 72
            LE L L     T      +       ++LREL +G N              L    +L+
Sbjct: 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR 259

Query: 73  RVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGG----MLPEAVGNFSTRLG 128
            + I +  +   G  D       L     L+ L ++ N  G     +L E +     +L 
Sbjct: 260 TLWIWECGITAKGCGD---LCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLE 316

Query: 129 ILSVAENQL----FGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNK 184
            L V           +  S L     L  L +S N+        + D          G +
Sbjct: 317 SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR--------LED---------AGVR 359

Query: 185 FLGEIPSSIGNLTLLMTLNFAENML--EG--SIPSSLGKCQNLIVLDLYNNNLS 234
            L +        ++L  L  A+  +      S+ ++L    +L  LDL NN L 
Sbjct: 360 ELCQGLGQ--PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 33/127 (25%), Positives = 50/127 (39%), Gaps = 11/127 (8%)

Query: 134 ENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSI 193
             +L    P+ +R LV    LD   +    +I G   +   L+ L L     L  + S++
Sbjct: 15  HLELRNRTPAAVRELV----LDNCKSN-DGKIEGLTAEFVNLEFLSLINVG-LISV-SNL 67

Query: 194 GNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLS--IYL 251
             L  L  L  +EN + G +     K  NL  L+L  N L     S +  L  L     L
Sbjct: 68  PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD--ISTLEPLKKLECLKSL 125

Query: 252 DLSQNQL 258
           DL   ++
Sbjct: 126 DLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 30/139 (21%), Positives = 47/139 (33%), Gaps = 8/139 (5%)

Query: 98  NASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLS 157
             + +  L + +        E +      L  LS+    L     S L  L  L+ L+LS
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL--ISVSNLPKLPKLKKLELS 79

Query: 158 GNQFTSRIPGSIGDLQKLQMLGLNGNKF--LGEIPSSIGNLTLLMTLNFAEN---MLEGS 212
            N+    +      L  L  L L+GNK   +  +   +  L  L +L+        L   
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNCEVTNLNDY 138

Query: 213 IPSSLGKCQNLIVLDLYNN 231
             S       L  LD Y+ 
Sbjct: 139 RESVFKLLPQLTYLDGYDR 157

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 44.2 bits (105), Expect = 7e-06
 Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 12/96 (12%)

Query: 141 IPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSI-GNLTLL 199
           +P+G+    + + L L+ NQ T   PG    L  LQ L  N NK L  IP+ +   LT L
Sbjct: 27  VPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQL 83

Query: 200 MTLNFAENMLEGSIPS----SLGKCQNLIVLDLYNN 231
             L+  +N L+ SIP     +L    ++    LYNN
Sbjct: 84  TQLDLNDNHLK-SIPRGAFDNLKSLTHIY---LYNN 115

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 42.8 bits (101), Expect = 5e-05
 Identities = 36/251 (14%), Positives = 83/251 (33%), Gaps = 44/251 (17%)

Query: 23  NLEGLNLAGNQFTGPIPVSISNA-----SNLRELMIGKNGFSGK-----VPSLENLH-KL 71
           ++  LNL+GN         +        +N+  L +  N  S K     V +L  +   +
Sbjct: 52  SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTI 111

Query: 72  QRVIISQNHLGNYGEK---DNLEFVNSLVNASRLELLQISDNNFGGM----LPEAVGNFS 124
             + +  N   +            + +      +  L +  N+ G      L + +    
Sbjct: 112 TVLDLGWNDFSSKSSSEFKQAFSNLPA-----SITSLNLRGNDLGIKSSDELIQILAAIP 166

Query: 125 TRLGILSVAENQL----FGNIPSGLRNL-VNLELLDLSGNQFTSRIPGSIGDL-----QK 174
             +  L++  N L       +   L ++  ++  LDLS N    +    +  +       
Sbjct: 167 ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNH 226

Query: 175 LQMLGLNGNKF----LGEIPSSIGNLTLLMTLNFAENMLEG-------SIPSSLGKCQNL 223
           +  L L  N      L  +     +L  L T+    ++++        ++ ++    Q +
Sbjct: 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI 286

Query: 224 IVLDLYNNNLS 234
           I++D     + 
Sbjct: 287 ILVDKNGKEIH 297

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 37/249 (14%), Positives = 80/249 (32%), Gaps = 30/249 (12%)

Query: 13  LPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQ 72
            P+ +    P +  + L G        +            I     S     LE +  L+
Sbjct: 57  SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEA--MSSSYTWLEEIR-LK 113

Query: 73  RVIISQNHLGNYGEK-DNLEFVN--------------SLVNASRLELLQISDNNFGGMLP 117
           R++++ + L    +   N + +                      L+ L + +++   +  
Sbjct: 114 RMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSG 173

Query: 118 EAVGNFSTRLGIL-SVAENQLFGNI-PSGLRNLV----NLELLDLSGNQFTSRIPGSIGD 171
             + +F      L S+  + L   +  S L  LV    NL+ L L+      ++   +  
Sbjct: 174 HWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQR 233

Query: 172 LQKLQMLGLNG------NKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIV 225
             +L+ LG  G            +  ++     L  L+   + +   +P+    C  L  
Sbjct: 234 APQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTT 293

Query: 226 LDLYNNNLS 234
           L+L    + 
Sbjct: 294 LNLSYATVQ 302

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 39.1 bits (91), Expect = 5e-04
 Identities = 20/127 (15%), Positives = 46/127 (36%), Gaps = 12/127 (9%)

Query: 138 FGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKF-----LGEIPSS 192
           + ++P+G  +   ++ +D + +   S     +  LQ ++ + L    +     L  +   
Sbjct: 50  YNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQL 109

Query: 193 IGNLTLLMTLNFAENML--EGSIPSSLGKCQNLIVLDLYNN----NLSGTIPSEVIGLSS 246
                 ++ +         +  I  +L   +NL  L L +          + +    L S
Sbjct: 110 ENLQKSMLEMEIISCGNVTDKGI-IALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPS 168

Query: 247 LSIYLDL 253
           L + LDL
Sbjct: 169 LELKLDL 175

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 7e-04
 Identities = 45/250 (18%), Positives = 74/250 (29%), Gaps = 68/250 (27%)

Query: 31  GNQFTGPIPVS-------ISNASNLREL----------MIGKNGFSGK-VPSLENL--HK 70
            NQ      VS       +  A  L EL          ++G    SGK   +L+    +K
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQA--LLELRPAKNVLIDGVLG----SGKTWVALDVCLSYK 175

Query: 71  LQRVIISQNH---LGNYGEKDN-LEFVNSLVNASRLELLQISDNNFGGMLP-EAVGNFST 125
           +Q  +  +     L N    +  LE +  L+          SD++    L   ++     
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 126 RLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQ----FTSRIPGSIGDLQKLQMLGLN 181
           RL      EN L   +   L N+ N +  +          T+R        Q    L   
Sbjct: 236 RLLKSKPYENCLL--V---LLNVQNAKAWNAFNLSCKILLTTR------FKQVTDFLSAA 284

Query: 182 GNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEV 241
               +     S+  LT     +             L K  +    DL         P EV
Sbjct: 285 TTTHISLDHHSMT-LTPDEVKSL------------LLKYLDCRPQDL---------PREV 322

Query: 242 IGLSSLSIYL 251
           +  +   + +
Sbjct: 323 LTTNPRRLSI 332

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	258
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.98
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.97
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.97
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.97
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.97
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.96
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.96
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.96
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.95
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.95
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.95
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.95
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.95
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.95
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.95
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.95
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.95
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.95
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.95
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.94
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.94
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.94
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.92
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.91
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.91
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.91
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.91
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.9
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.9
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.9
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.9
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.85
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.81
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.79
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.79
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.79
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.78
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.78
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.75
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.72
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.71
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.69
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.69
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.69
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.68
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.68
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.67
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.67
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.67
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.66
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.65
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.64
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.64
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.64
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.63
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.63
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.61
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.59
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.58
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.51
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.5
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.49
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.47
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.46
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.44
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.43
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.39
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.27
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.25
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.22
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.21
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.13
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.1
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.05
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.01
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.8
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.67
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.66
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.62
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.54
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.18
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.15
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.85
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.49
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.13
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.54
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	89.59
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	84.57

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.8e-33  Score=225.24  Aligned_cols=244  Identities=28%  Similarity=0.428  Sum_probs=213.7

Q ss_pred             CCCCcCcccC--CCCcchhccCCCCceEEecC-CcccccccccccCCCCCcEEEeecccCCCCCC-CccccCCcceEEec
Q 048125            2 FDFPFNQLQG--SLPSDLGFTLPNLEGLNLAG-NQFTGPIPVSISNASNLRELMIGKNGFSGKVP-SLENLHKLQRVIIS   77 (258)
Q Consensus         2 l~~~~~~~~~--~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~   77 (258)
                      |+++++.+++  .+|..+. ++++|++|++.+ +.+.+..|..+.++++|++|++++|.+....+ .+..+++|++|+++
T Consensus        55 L~L~~~~l~~~~~~~~~l~-~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  133 (313)
T 1ogq_A           55 LDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS  133 (313)
T ss_dssp             EEEECCCCSSCEECCGGGG-GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECC
T ss_pred             EECCCCCccCCcccChhHh-CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCC
Confidence            5678889988  7888777 599999999995 88888889999999999999999999974444 48899999999999


Q ss_pred             cccccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEee
Q 048125           78 QNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLS  157 (258)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  157 (258)
                      +|.++.       ..+..+..+++|++|++++|.+.+.+|..++.+.+.++.|++++|.+....|..+..++ |++|+++
T Consensus       134 ~N~l~~-------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls  205 (313)
T 1ogq_A          134 YNALSG-------TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS  205 (313)
T ss_dssp             SSEEES-------CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred             CCccCC-------cCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence            999876       44557888999999999999998788888887755899999999988767788887776 9999999


Q ss_pred             CCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCcccccc
Q 048125          158 GNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTI  237 (258)
Q Consensus       158 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~  237 (258)
                      +|.+.+..+..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+.+..|..+..+++|+.|++++|++++.+
T Consensus       206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i  284 (313)
T 1ogq_A          206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI  284 (313)
T ss_dssp             SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred             CCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccC
Confidence            9999888888899999999999999999865554 788899999999999999889999999999999999999999888


Q ss_pred             ccccccccCcceeEecCCCC
Q 048125          238 PSEVIGLSSLSIYLDLSQNQ  257 (258)
Q Consensus       238 ~~~~~~~~~l~~~L~l~~n~  257 (258)
                      |.. ..++++ +++++++|+
T Consensus       285 p~~-~~l~~L-~~l~l~~N~  302 (313)
T 1ogq_A          285 PQG-GNLQRF-DVSAYANNK  302 (313)
T ss_dssp             CCS-TTGGGS-CGGGTCSSS
T ss_pred             CCC-cccccc-ChHHhcCCC
Confidence            876 788999 999999987

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.5e-32  Score=244.08  Aligned_cols=247  Identities=33%  Similarity=0.563  Sum_probs=201.6

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEecccc
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNH   80 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~   80 (258)
                      |++.+|.+++.+|..+. ++++|++|++.+|.+++..|..+.++++|++|++++|.+....+. +..+++|++|++++|.
T Consensus       399 L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~  477 (768)
T 3rgz_A          399 LYLQNNGFTGKIPPTLS-NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND  477 (768)
T ss_dssp             EECCSSEEEEECCGGGG-GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred             EECCCCccccccCHHHh-cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCc
Confidence            45667777767777666 478888888888887777777788888888888888887754444 7777888888888887


Q ss_pred             ccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCc
Q 048125           81 LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQ  160 (258)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  160 (258)
                      +++       ..+..+..+++|++|++++|.+.+.+|..++.+ ++++.|++++|.+...+|..+..+++|++|++++|.
T Consensus       478 l~~-------~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  549 (768)
T 3rgz_A          478 LTG-------EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL-ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL  549 (768)
T ss_dssp             CCS-------CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred             ccC-------cCCHHHhcCCCCCEEEccCCccCCcCChHHhcC-CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence            775       345567788889999999998887888777766 489999999988877788888888899999999887


Q ss_pred             cccccCC----------------------------------------------------------------------ccc
Q 048125          161 FTSRIPG----------------------------------------------------------------------SIG  170 (258)
Q Consensus       161 ~~~~~~~----------------------------------------------------------------------~~~  170 (258)
                      +.+..|.                                                                      .+.
T Consensus       550 l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~  629 (768)
T 3rgz_A          550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD  629 (768)
T ss_dssp             EESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCS
T ss_pred             cCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhh
Confidence            7644332                                                                      233


Q ss_pred             CccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccccccccCccee
Q 048125          171 DLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIY  250 (258)
Q Consensus       171 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~  250 (258)
                      .+++|++|++++|.+.+.+|..++.+++|+.|++++|.+++.+|..++.+++|+.|++++|++++.+|..+..++.| ++
T Consensus       630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L-~~  708 (768)
T 3rgz_A          630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML-TE  708 (768)
T ss_dssp             SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCC-SE
T ss_pred             ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCC-CE
Confidence            45778899999999998899999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             EecCCCCC
Q 048125          251 LDLSQNQL  258 (258)
Q Consensus       251 L~l~~n~~  258 (258)
                      |||++|++
T Consensus       709 L~ls~N~l  716 (768)
T 3rgz_A          709 IDLSNNNL  716 (768)
T ss_dssp             EECCSSEE
T ss_pred             EECcCCcc
Confidence            99999864

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.98  E-value=1.8e-31  Score=237.25  Aligned_cols=248  Identities=38%  Similarity=0.578  Sum_probs=205.2

Q ss_pred             CCCCcCcccCCCCcchhcc-CCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEeccc
Q 048125            2 FDFPFNQLQGSLPSDLGFT-LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQN   79 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~   79 (258)
                      |++++|.+++.+|..+... +++|++|++.+|.+++..|..+.++++|++|++++|.+....+. +..+++|+.|++++|
T Consensus       373 L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n  452 (768)
T 3rgz_A          373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN  452 (768)
T ss_dssp             EECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred             EEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCC
Confidence            4455555555555544421 56677777777777777777788888888888888887654444 778888888888888


Q ss_pred             cccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCC
Q 048125           80 HLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGN  159 (258)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  159 (258)
                      .+..       .++..+..+++|+.|++++|.+.+..|..+..+ ++++.|++++|.+...+|.+++.+++|++|++++|
T Consensus       453 ~l~~-------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N  524 (768)
T 3rgz_A          453 MLEG-------EIPQELMYVKTLETLILDFNDLTGEIPSGLSNC-TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN  524 (768)
T ss_dssp             CCCS-------CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred             cccC-------cCCHHHcCCCCceEEEecCCcccCcCCHHHhcC-CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCC
Confidence            8775       455577888999999999999987888877766 58999999999998788999999999999999999


Q ss_pred             ccccccCCcccCccCCcEEEecCCccccccCC------------------------------------------------
Q 048125          160 QFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPS------------------------------------------------  191 (258)
Q Consensus       160 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~------------------------------------------------  191 (258)
                      .+.+..|..+..+++|+.|++++|.+.+.+|.                                                
T Consensus       525 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  604 (768)
T 3rgz_A          525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL  604 (768)
T ss_dssp             CCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGG
T ss_pred             cccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhh
Confidence            99888899999999999999999987754443                                                


Q ss_pred             ----------------------CCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccccccccCcce
Q 048125          192 ----------------------SIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSI  249 (258)
Q Consensus       192 ----------------------~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~  249 (258)
                                            .++.+++|+.|++++|.+++.+|..++.+++|+.|++++|++++.+|..+..++.| +
T Consensus       605 ~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L-~  683 (768)
T 3rgz_A          605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL-N  683 (768)
T ss_dssp             GGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC-C
T ss_pred             hccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCC-C
Confidence                                  34456789999999999999999999999999999999999999999999999999 9


Q ss_pred             eEecCCCCC
Q 048125          250 YLDLSQNQL  258 (258)
Q Consensus       250 ~L~l~~n~~  258 (258)
                      +|||++|.+
T Consensus       684 ~LdLs~N~l  692 (768)
T 3rgz_A          684 ILDLSSNKL  692 (768)
T ss_dssp             EEECCSSCC
T ss_pred             EEECCCCcc
Confidence            999999975

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.97  E-value=2.9e-31  Score=222.88  Aligned_cols=131  Identities=22%  Similarity=0.178  Sum_probs=89.3

Q ss_pred             cceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEeccc
Q 048125          127 LGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAE  206 (258)
Q Consensus       127 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  206 (258)
                      ++.|++++|.+....+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus       277 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  356 (455)
T 3v47_A          277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY  356 (455)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCS
T ss_pred             ceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCC
Confidence            33333333333333455566667777777777777766666777777777777777777666666777777777777777


Q ss_pred             ccccccCCcccccCcCCcEEeccCCccccccccccccccCcceeEecCCCCC
Q 048125          207 NMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       207 n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~  258 (258)
                      |.+.+..|..+..+++|++|++++|++++..+..+..++++ ++|+|++|++
T Consensus       357 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~l~~N~l  407 (455)
T 3v47_A          357 NHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSL-QKIWLHTNPW  407 (455)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC-CEEECCSSCB
T ss_pred             CcccccChhhccccccccEEECCCCccccCCHhHhccCCcc-cEEEccCCCc
Confidence            77776667777777777777777777775444456677777 7777777764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.97  E-value=1.2e-30  Score=219.11  Aligned_cols=248  Identities=22%  Similarity=0.247  Sum_probs=169.9

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCccccc-ccccccCCCCCcEEEeecccCCCCCC-CccccCCcceEEeccc
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGP-IPVSISNASNLRELMIGKNGFSGKVP-SLENLHKLQRVIISQN   79 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~   79 (258)
                      |++++|.+++..|..+. ++++|++|++.+|.+.+. .+..|.++++|++|++++|.+....+ .+..+++|++|++++|
T Consensus        35 L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  113 (455)
T 3v47_A           35 VDLSLNSIAELNETSFS-RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQC  113 (455)
T ss_dssp             EECCSSCCCEECTTTTS-SCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTS
T ss_pred             EEecCCccCcCChhHhc-cCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCC
Confidence            56777777744455444 577788888877766533 34567777777777777777766543 3677777777777777


Q ss_pred             cccCcCCCccchhhhc--cccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCC----------
Q 048125           80 HLGNYGEKDNLEFVNS--LVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRN----------  147 (258)
Q Consensus        80 ~~~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~----------  147 (258)
                      .+++       ..+..  +..+++|++|++++|.+.+..|..+....+++++|++++|.+....+..+..          
T Consensus       114 ~l~~-------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~  186 (455)
T 3v47_A          114 NLDG-------AVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR  186 (455)
T ss_dssp             CCBT-------HHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEE
T ss_pred             CCCc-------cccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccc
Confidence            7654       11222  4455556666665555553334332222234555555555443222221111          


Q ss_pred             --------------------------------------------------------------------------------
Q 048125          148 --------------------------------------------------------------------------------  147 (258)
Q Consensus       148 --------------------------------------------------------------------------------  147 (258)
                                                                                                      
T Consensus       187 l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  266 (455)
T 3v47_A          187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN  266 (455)
T ss_dssp             CTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCT
T ss_pred             cccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcc
Confidence                                                                                            


Q ss_pred             -------CCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccC
Q 048125          148 -------LVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKC  220 (258)
Q Consensus       148 -------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  220 (258)
                             .++|+++++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+
T Consensus       267 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  346 (455)
T 3v47_A          267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENL  346 (455)
T ss_dssp             TTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTC
T ss_pred             cccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCc
Confidence                   1355666666666665567778888899999999999887778888899999999999999987778888889


Q ss_pred             cCCcEEeccCCccccccccccccccCcceeEecCCCCC
Q 048125          221 QNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       221 ~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~  258 (258)
                      ++|+.|++++|++++..+..+..++.| ++|++++|.+
T Consensus       347 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L-~~L~L~~N~l  383 (455)
T 3v47_A          347 DKLEVLDLSYNHIRALGDQSFLGLPNL-KELALDTNQL  383 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTC-CEEECCSSCC
T ss_pred             ccCCEEECCCCcccccChhhccccccc-cEEECCCCcc
Confidence            999999999999987778888899999 9999999875

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.97  E-value=1.1e-30  Score=208.42  Aligned_cols=243  Identities=22%  Similarity=0.267  Sum_probs=206.6

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCC---CCccccCCcceEEecc
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKV---PSLENLHKLQRVIISQ   78 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~l~~L~~L~l~~   78 (258)
                      ++..++.++ .+|..+   .++|++|++.++.++...+..|.++++|++|++++|.+....   ..+..+++|++|++++
T Consensus        12 l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~   87 (306)
T 2z66_A           12 IRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF   87 (306)
T ss_dssp             EECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred             EEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence            456677788 888755   468999999999998655556889999999999999987542   3356789999999999


Q ss_pred             ccccCcCCCccchhhhccccCCCCcEEEeeccccccccc-ccccccccccceEEecccccCCccCccCCCCCcccEEEee
Q 048125           79 NHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLP-EAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLS  157 (258)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  157 (258)
                      |.+..        ++..+..+++|++|++++|.+.+..+ ..+..+ ++|++|++++|.+....+..+..+++|++|+++
T Consensus        88 n~i~~--------l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  158 (306)
T 2z66_A           88 NGVIT--------MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL-RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA  158 (306)
T ss_dssp             CSEEE--------EEEEEETCTTCCEEECTTSEEESSTTTTTTTTC-TTCCEEECTTSCCEECSTTTTTTCTTCCEEECT
T ss_pred             Ccccc--------ChhhcCCCCCCCEEECCCCcccccccchhhhhc-cCCCEEECCCCcCCccchhhcccCcCCCEEECC
Confidence            98873        44467889999999999999874433 234444 689999999998876777888889999999999


Q ss_pred             CCcccc-ccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccc
Q 048125          158 GNQFTS-RIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGT  236 (258)
Q Consensus       158 ~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  236 (258)
                      +|.+.+ ..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++++.
T Consensus       159 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  238 (306)
T 2z66_A          159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS  238 (306)
T ss_dssp             TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred             CCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence            999975 5788899999999999999999987788999999999999999999877777888899999999999999988


Q ss_pred             ccccccccc-CcceeEecCCCCC
Q 048125          237 IPSEVIGLS-SLSIYLDLSQNQL  258 (258)
Q Consensus       237 ~~~~~~~~~-~l~~~L~l~~n~~  258 (258)
                      .+..+..++ ++ ++|++++|++
T Consensus       239 ~~~~~~~~~~~L-~~L~L~~N~~  260 (306)
T 2z66_A          239 KKQELQHFPSSL-AFLNLTQNDF  260 (306)
T ss_dssp             SSSSCCCCCTTC-CEEECTTCCE
T ss_pred             CHHHHHhhhccC-CEEEccCCCe
Confidence            888898886 78 9999999975

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=4e-30  Score=217.22  Aligned_cols=248  Identities=21%  Similarity=0.208  Sum_probs=171.2

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEecccc
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNH   80 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~   80 (258)
                      |++++|.+++..|..+. ++++|++|++.+|.++...+..|.++++|++|++++|.+....+. +..+++|++|++++|.
T Consensus        61 L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~  139 (477)
T 2id5_A           61 LELNENIVSAVEPGAFN-NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND  139 (477)
T ss_dssp             EECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT
T ss_pred             EECCCCccCEeChhhhh-CCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc
Confidence            56677777744455444 577888888877777765555667777777777777777655443 6677777777777776


Q ss_pred             ccCcCCCccchhhhccccCCCCcEEEeeccccccccccccccc-----------------------ccccceEEeccccc
Q 048125           81 LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNF-----------------------STRLGILSVAENQL  137 (258)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-----------------------~~~l~~L~l~~~~~  137 (258)
                      +.....       ..+..+++|+.|++++|.+.+..+..+..+                       .++++.|++++|..
T Consensus       140 l~~~~~-------~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~  212 (477)
T 2id5_A          140 LVYISH-------RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY  212 (477)
T ss_dssp             CCEECT-------TSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTT
T ss_pred             cceeCh-------hhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcc
Confidence            654322       234455555555555555542222222222                       13444444444433


Q ss_pred             CCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCccc
Q 048125          138 FGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSL  217 (258)
Q Consensus       138 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  217 (258)
                      ...++.......+|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+
T Consensus       213 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  292 (477)
T 2id5_A          213 LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF  292 (477)
T ss_dssp             CCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTB
T ss_pred             ccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHh
Confidence            33333333333466677777777764444567888999999999999987777788999999999999999988888889


Q ss_pred             ccCcCCcEEeccCCccccccccccccccCcceeEecCCCCC
Q 048125          218 GKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       218 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~  258 (258)
                      ..+++|+.|++++|++++..+..|..+++| ++|++++|++
T Consensus       293 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~l~~N~l  332 (477)
T 2id5_A          293 RGLNYLRVLNVSGNQLTTLEESVFHSVGNL-ETLILDSNPL  332 (477)
T ss_dssp             TTCTTCCEEECCSSCCSCCCGGGBSCGGGC-CEEECCSSCE
T ss_pred             cCcccCCEEECCCCcCceeCHhHcCCCccc-CEEEccCCCc
Confidence            999999999999999996666678888999 9999999974

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=2.4e-30  Score=207.07  Aligned_cols=226  Identities=27%  Similarity=0.443  Sum_probs=202.8

Q ss_pred             CCCceEEecCCcccc--cccccccCCCCCcEEEeec-ccCCCCCC-CccccCCcceEEeccccccCcCCCccchhhhccc
Q 048125           22 PNLEGLNLAGNQFTG--PIPVSISNASNLRELMIGK-NGFSGKVP-SLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLV   97 (258)
Q Consensus        22 ~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   97 (258)
                      .++++|++.++.+.+  .+|..+.++++|++|++++ |.+....+ .+..+++|++|++++|.++.       ..+..+.
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-------~~p~~~~  122 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-------AIPDFLS  122 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE-------ECCGGGG
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC-------cCCHHHh
Confidence            579999999999998  7899999999999999995 77765444 48999999999999999875       4555788


Q ss_pred             cCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCC-cccEEEeeCCccccccCCcccCccCCc
Q 048125           98 NASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLV-NLELLDLSGNQFTSRIPGSIGDLQKLQ  176 (258)
Q Consensus        98 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~  176 (258)
                      .+++|++|++++|.+.+..|..+..+ ++|++|++++|.+...+|..+..++ +|++|++++|.+.+..|..+..++ |+
T Consensus       123 ~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~  200 (313)
T 1ogq_A          123 QIKTLVTLDFSYNALSGTLPPSISSL-PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LA  200 (313)
T ss_dssp             GCTTCCEEECCSSEEESCCCGGGGGC-TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CS
T ss_pred             CCCCCCEEeCCCCccCCcCChHHhcC-CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-cc
Confidence            99999999999999988888888776 5999999999998867888888887 999999999999988888888887 99


Q ss_pred             EEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccccccccCcceeEecCCC
Q 048125          177 MLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQN  256 (258)
Q Consensus       177 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n  256 (258)
                      +|++++|.+.+..|..+..+++|+.|++++|.+.+..+. +..+++|++|++++|++++.+|..+..++.+ ++|+|++|
T Consensus       201 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L-~~L~Ls~N  278 (313)
T 1ogq_A          201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL-HSLNVSFN  278 (313)
T ss_dssp             EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTC-CEEECCSS
T ss_pred             EEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCC-CEEECcCC
Confidence            999999999988889999999999999999999865555 7889999999999999999999999999999 99999999


Q ss_pred             CC
Q 048125          257 QL  258 (258)
Q Consensus       257 ~~  258 (258)
                      ++
T Consensus       279 ~l  280 (313)
T 1ogq_A          279 NL  280 (313)
T ss_dssp             EE
T ss_pred             cc
Confidence            64

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=1.9e-29  Score=203.07  Aligned_cols=225  Identities=21%  Similarity=0.260  Sum_probs=200.6

Q ss_pred             CCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCC
Q 048125           21 LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNAS  100 (258)
Q Consensus        21 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  100 (258)
                      .+++++|++.++.++ .+|..+.++++|++|++++|.+...+..+..+++|++|++++|.++.        ++..+..++
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~--------lp~~l~~l~  150 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRA--------LPASIASLN  150 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCC--------CCGGGGGCT
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCcccc--------CcHHHhcCc
Confidence            478999999999998 67778888999999999999999666668999999999999998873        455688899


Q ss_pred             CCcEEEeecccccccccccccc--------cccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCc
Q 048125          101 RLELLQISDNNFGGMLPEAVGN--------FSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDL  172 (258)
Q Consensus       101 ~L~~L~l~~~~~~~~~~~~~~~--------~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  172 (258)
                      +|++|++++|...+.+|..+..        ..++|+.|++++|.+. .+|..+..+++|++|++++|.+.+ .+..+..+
T Consensus       151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l  228 (328)
T 4fcg_A          151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHL  228 (328)
T ss_dssp             TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGC
T ss_pred             CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccC
Confidence            9999999998887788876643        1368999999999988 778889999999999999999984 56678999


Q ss_pred             cCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccccccccCcceeEe
Q 048125          173 QKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLD  252 (258)
Q Consensus       173 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~  252 (258)
                      ++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..+..++++ +.++
T Consensus       229 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L-~~l~  307 (328)
T 4fcg_A          229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN-CIIL  307 (328)
T ss_dssp             TTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTT-CEEE
T ss_pred             CCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCc-eEEe
Confidence            999999999999988999999999999999999999988999999999999999999999999999999999999 9999


Q ss_pred             cCCCC
Q 048125          253 LSQNQ  257 (258)
Q Consensus       253 l~~n~  257 (258)
                      +..+.
T Consensus       308 l~~~~  312 (328)
T 4fcg_A          308 VPPHL  312 (328)
T ss_dssp             CCGGG
T ss_pred             CCHHH
Confidence            87653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=3.9e-29  Score=201.54  Aligned_cols=241  Identities=22%  Similarity=0.294  Sum_probs=144.0

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccc
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHL   81 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~   81 (258)
                      |++++|.++ .++...+.++++|++|++.+|.+++..|..|.++++|++|++++|.+...+..+.  ++|++|++++|.+
T Consensus        57 L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l  133 (330)
T 1xku_A           57 LDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEI  133 (330)
T ss_dssp             EECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCC
T ss_pred             EECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcc
Confidence            455666666 3444333356666666666666665556666666666666666666654443322  5666666666655


Q ss_pred             cCcCCCccchhhhccccCCCCcEEEeecccccc--cccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCC
Q 048125           82 GNYGEKDNLEFVNSLVNASRLELLQISDNNFGG--MLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGN  159 (258)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  159 (258)
                      ...       ....+..+++|+.|++++|.+..  ..+..+..+ ++++.|++++|.+. .+|..+.  ++|++|++++|
T Consensus       134 ~~~-------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n  202 (330)
T 1xku_A          134 TKV-------RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM-KKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGN  202 (330)
T ss_dssp             CBB-------CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC-TTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTS
T ss_pred             ccc-------CHhHhcCCccccEEECCCCcCCccCcChhhccCC-CCcCEEECCCCccc-cCCcccc--ccCCEEECCCC
Confidence            542       12245566777777777776542  223333333 46677777666655 3333332  56677777777


Q ss_pred             ccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCcccccccc
Q 048125          160 QFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPS  239 (258)
Q Consensus       160 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~  239 (258)
                      .+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .+|..+..+++|+.|++++|+|++..+.
T Consensus       203 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~  281 (330)
T 1xku_A          203 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSN  281 (330)
T ss_dssp             CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChh
Confidence            666555666666777777777777766555556666677777777777766 5566666667777777777777643333


Q ss_pred             cccc------ccCcceeEecCCCCC
Q 048125          240 EVIG------LSSLSIYLDLSQNQL  258 (258)
Q Consensus       240 ~~~~------~~~l~~~L~l~~n~~  258 (258)
                      .|..      .+.+ ..|++++|++
T Consensus       282 ~f~~~~~~~~~~~l-~~l~l~~N~~  305 (330)
T 1xku_A          282 DFCPPGYNTKKASY-SGVSLFSNPV  305 (330)
T ss_dssp             SSSCSSCCTTSCCC-SEEECCSSSS
T ss_pred             hcCCcccccccccc-cceEeecCcc
Confidence            3322      2445 6666666653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=1.3e-29  Score=214.11  Aligned_cols=247  Identities=23%  Similarity=0.223  Sum_probs=187.6

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEecccc
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNH   80 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~   80 (258)
                      |++++|.+++..|.. +.++++|++|++.+|.+++..+..|.++++|++|++++|.+...+.. +..+++|++|++++|.
T Consensus        37 L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  115 (477)
T 2id5_A           37 LDLGKNRIKTLNQDE-FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK  115 (477)
T ss_dssp             EECCSSCCCEECTTT-TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSC
T ss_pred             EECCCCccceECHhH-ccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCc
Confidence            677888888433444 44689999999999988877788888899999999999988876665 7788899999999988


Q ss_pred             ccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCc
Q 048125           81 LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQ  160 (258)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  160 (258)
                      +...       .+..+..+++|++|++++|.+.+..+..+..+ ++|+.|++++|.+....+..+..+++|++|++++|.
T Consensus       116 i~~~-------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  187 (477)
T 2id5_A          116 IVIL-------LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL-NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN  187 (477)
T ss_dssp             CCEE-------CTTTTTTCTTCCEEEECCTTCCEECTTSSTTC-TTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC
T ss_pred             cccC-------ChhHccccccCCEEECCCCccceeChhhccCC-CCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc
Confidence            8753       23467788999999999998875555555555 589999999988875545567777888888888887


Q ss_pred             cccccCCcccCccCCcEEEecCC------------------------ccccccCCCCCCCCCcceEecccccccccCCcc
Q 048125          161 FTSRIPGSIGDLQKLQMLGLNGN------------------------KFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSS  216 (258)
Q Consensus       161 ~~~~~~~~~~~~~~L~~L~l~~~------------------------~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  216 (258)
                      +....+..|..+++|++|++++|                        .+++..+..+..+++|+.|++++|.+.+..+..
T Consensus       188 i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  267 (477)
T 2id5_A          188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM  267 (477)
T ss_dssp             CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTS
T ss_pred             CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhh
Confidence            77666666666666666666554                        343222234567778888888888887666777


Q ss_pred             cccCcCCcEEeccCCccccccccccccccCcceeEecCCCCC
Q 048125          217 LGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       217 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~  258 (258)
                      +..+++|+.|++++|++.+..+..|..+++| ++|+|++|.+
T Consensus       268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~N~l  308 (477)
T 2id5_A          268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYL-RVLNVSGNQL  308 (477)
T ss_dssp             CTTCTTCCEEECCSSCCSEECTTTBTTCTTC-CEEECCSSCC
T ss_pred             ccccccCCEEECCCCccceECHHHhcCcccC-CEEECCCCcC
Confidence            7888888888888888887777888888888 8899888864

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.97  E-value=5.2e-29  Score=208.33  Aligned_cols=241  Identities=23%  Similarity=0.249  Sum_probs=203.5

Q ss_pred             CCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEeccccc
Q 048125            3 DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNHL   81 (258)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~   81 (258)
                      +..+..++ .+|..+.   ++++.|++.+|.+++..+..|.++++|++|++++|.+...... +..+++|++|++++|.+
T Consensus        49 ~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l  124 (440)
T 3zyj_A           49 ICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL  124 (440)
T ss_dssp             ECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred             EeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence            34556677 7887654   6899999999999988888999999999999999999876654 88999999999999999


Q ss_pred             cCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCc-cCccCCCCCcccEEEeeCCc
Q 048125           82 GNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGN-IPSGLRNLVNLELLDLSGNQ  160 (258)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~  160 (258)
                      +....       ..+..+++|++|++++|.+. .++...+...++|+.|+++++..... .+..+..+++|++|++++|.
T Consensus       125 ~~~~~-------~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~  196 (440)
T 3zyj_A          125 TTIPN-------GAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN  196 (440)
T ss_dssp             SSCCT-------TTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC
T ss_pred             CeeCH-------hHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc
Confidence            86432       25778999999999999988 44443333346999999998544333 34568889999999999999


Q ss_pred             cccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccc
Q 048125          161 FTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSE  240 (258)
Q Consensus       161 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~  240 (258)
                      +. ..| .+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..+..+++|+.|++++|++++..+..
T Consensus       197 l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  274 (440)
T 3zyj_A          197 LR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDL  274 (440)
T ss_dssp             CS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTT
T ss_pred             Cc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhH
Confidence            98 445 4788999999999999999888899999999999999999999888889999999999999999999666677


Q ss_pred             cccccCcceeEecCCCCC
Q 048125          241 VIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       241 ~~~~~~l~~~L~l~~n~~  258 (258)
                      +..++.+ ++|+|++|++
T Consensus       275 ~~~l~~L-~~L~L~~Np~  291 (440)
T 3zyj_A          275 FTPLHHL-ERIHLHHNPW  291 (440)
T ss_dssp             TSSCTTC-CEEECCSSCE
T ss_pred             hccccCC-CEEEcCCCCc
Confidence            8889999 9999999985

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.97  E-value=3.2e-29  Score=217.60  Aligned_cols=253  Identities=25%  Similarity=0.264  Sum_probs=181.6

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCC-CCCC-ccccCCcceEEeccc
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSG-KVPS-LENLHKLQRVIISQN   79 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~-~~~l~~L~~L~l~~~   79 (258)
                      |++++|.++ .+|..+. ++++|++|++.+|.+.+..+..+.++++|++|++++|.+.. .+.. +..+++|++|++++|
T Consensus       283 L~l~~n~l~-~lp~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  360 (606)
T 3t6q_A          283 LDLTATHLS-ELPSGLV-GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD  360 (606)
T ss_dssp             EECTTSCCS-CCCSSCC-SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSS
T ss_pred             EeccCCccC-CCChhhc-ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCC
Confidence            677888888 8888766 58899999999988887777778888888888888887753 2222 677778888888877


Q ss_pred             cccCcCC--Cc--c---------------chhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCc
Q 048125           80 HLGNYGE--KD--N---------------LEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGN  140 (258)
Q Consensus        80 ~~~~~~~--~~--~---------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~  140 (258)
                      .+.....  ..  .               -..+..+..+++|++|++++|.+.+..+.......++++.|++++|.+...
T Consensus       361 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~  440 (606)
T 3t6q_A          361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS  440 (606)
T ss_dssp             CCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTT
T ss_pred             ccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCc
Confidence            7654320  00  0               011223445566666666666555443433222335677777777776655


Q ss_pred             cCccCCCCCcccEEEeeCCccccc---cCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCccc
Q 048125          141 IPSGLRNLVNLELLDLSGNQFTSR---IPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSL  217 (258)
Q Consensus       141 ~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  217 (258)
                      .+..+..+++|++|++++|.+.+.   .+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+
T Consensus       441 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l  520 (606)
T 3t6q_A          441 SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL  520 (606)
T ss_dssp             CTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGG
T ss_pred             CHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHh
Confidence            666677777888888888877642   23457777888888888888887777788888888888888888887778888


Q ss_pred             ccCcCCcEEeccCCccccccccccccccCcceeEecCCCCC
Q 048125          218 GKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       218 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~  258 (258)
                      ..+++| .|++++|++++..|..+..++.+ ++|++++|++
T Consensus       521 ~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L-~~L~l~~N~~  559 (606)
T 3t6q_A          521 SHLKGI-YLNLASNHISIILPSLLPILSQQ-RTINLRQNPL  559 (606)
T ss_dssp             TTCCSC-EEECCSSCCCCCCGGGHHHHHTS-SEEECTTCCE
T ss_pred             Cccccc-EEECcCCcccccCHhhcccCCCC-CEEeCCCCCc
Confidence            888888 88888888887677778888888 8999998874

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=5.8e-29  Score=208.74  Aligned_cols=241  Identities=22%  Similarity=0.244  Sum_probs=203.3

Q ss_pred             CCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEeccccc
Q 048125            3 DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNHL   81 (258)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~   81 (258)
                      +..+..++ ++|..+   .+++++|++.+|.+++..+..|.++++|++|++++|.+....+. +.++++|++|++++|.+
T Consensus        60 ~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l  135 (452)
T 3zyi_A           60 VCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL  135 (452)
T ss_dssp             ECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence            34456677 788755   36899999999999988888999999999999999999876654 88999999999999998


Q ss_pred             cCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCcc-CccCCCCCcccEEEeeCCc
Q 048125           82 GNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNI-PSGLRNLVNLELLDLSGNQ  160 (258)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~  160 (258)
                      +....       ..+..+++|++|++++|.+. .++...+...++|+.|++++|.....+ +..+..+++|++|++++|.
T Consensus       136 ~~~~~-------~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~  207 (452)
T 3zyi_A          136 TVIPS-------GAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN  207 (452)
T ss_dssp             SBCCT-------TTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             CccCh-------hhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc
Confidence            86432       35778999999999999988 444433334469999999985443333 4568889999999999999


Q ss_pred             cccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccc
Q 048125          161 FTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSE  240 (258)
Q Consensus       161 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~  240 (258)
                      +.. .+ .+..+++|++|++++|.+.+..|..|..+++|+.|++++|.+.+..+..+..+++|+.|++++|++++..+..
T Consensus       208 l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  285 (452)
T 3zyi_A          208 IKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL  285 (452)
T ss_dssp             CSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTS
T ss_pred             ccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHH
Confidence            984 34 5788999999999999999888889999999999999999999888888999999999999999999666677


Q ss_pred             cccccCcceeEecCCCCC
Q 048125          241 VIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       241 ~~~~~~l~~~L~l~~n~~  258 (258)
                      +..++++ ++|+|++|++
T Consensus       286 ~~~l~~L-~~L~L~~Np~  302 (452)
T 3zyi_A          286 FTPLRYL-VELHLHHNPW  302 (452)
T ss_dssp             STTCTTC-CEEECCSSCE
T ss_pred             hccccCC-CEEEccCCCc
Confidence            8889999 9999999984

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.96  E-value=4.9e-29  Score=205.44  Aligned_cols=240  Identities=23%  Similarity=0.260  Sum_probs=115.6

Q ss_pred             CCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEeccccc
Q 048125            3 DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNHL   81 (258)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~   81 (258)
                      ++.++.++ .+|..++.++++|++|++.++.+++..+..|.++++|++|++++|.+....+. +..+++|++|++++|.+
T Consensus        51 ~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  129 (390)
T 3o6n_A           51 TFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL  129 (390)
T ss_dssp             EEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCcc
Confidence            34445555 55555544566666666666665554445555666666666666665554443 45556666666666655


Q ss_pred             cCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCcc--------------------
Q 048125           82 GNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNI--------------------  141 (258)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~--------------------  141 (258)
                      +..+..       .+..+++|++|++++|.+.+..+..+..+ ++++.|++++|.+....                    
T Consensus       130 ~~l~~~-------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~  201 (390)
T 3o6n_A          130 SSLPRG-------IFHNTPKLTTLSMSNNNLERIEDDTFQAT-TSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL  201 (390)
T ss_dssp             CCCCTT-------TTTTCTTCCEEECCSSCCCBCCTTTTSSC-TTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEE
T ss_pred             CcCCHH-------HhcCCCCCcEEECCCCccCccChhhccCC-CCCCEEECCCCcCCccccccccccceeeccccccccc
Confidence            532211       12344444444444444432222222222 23444444443332110                    


Q ss_pred             ---------------------------------------CccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecC
Q 048125          142 ---------------------------------------PSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNG  182 (258)
Q Consensus       142 ---------------------------------------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  182 (258)
                                                             ...+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus       202 ~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  281 (390)
T 3o6n_A          202 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN  281 (390)
T ss_dssp             ECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCS
T ss_pred             CCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCC
Confidence                                                   11233344455555555554444444455555555555555


Q ss_pred             CccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccccccccCcceeEecCCCC
Q 048125          183 NKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQ  257 (258)
Q Consensus       183 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~  257 (258)
                      |.++ .++..+..+++|++|++++|.+. .+|..+..+++|+.|++++|+++ .++  +..++.+ ++|++++|+
T Consensus       282 n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~-~~~--~~~~~~L-~~L~l~~N~  350 (390)
T 3o6n_A          282 NRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTL-KNLTLSHND  350 (390)
T ss_dssp             SCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC-CCC--CCTTCCC-SEEECCSSC
T ss_pred             CcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccc-eeC--chhhccC-CEEEcCCCC
Confidence            5544 23333444555555555555554 33444444555555555555554 222  3444555 555555554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=1.5e-29  Score=220.46  Aligned_cols=208  Identities=23%  Similarity=0.353  Sum_probs=126.7

Q ss_pred             ccccccCCCCCcEEEeecccCCC------------------CCCCcc--ccCCcceEEeccccccCcCCCccchhhhccc
Q 048125           38 IPVSISNASNLRELMIGKNGFSG------------------KVPSLE--NLHKLQRVIISQNHLGNYGEKDNLEFVNSLV   97 (258)
Q Consensus        38 ~~~~~~~~~~L~~L~l~~~~~~~------------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   97 (258)
                      +|..+.++++|++|++++|.+..                  .+..+.  .+++|++|++++|.+..       .++..+.
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~-------~~p~~l~  270 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT-------KLPTFLK  270 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS-------SCCTTTT
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc-------cChHHHh
Confidence            45566677777777777777766                  455565  77777777777776655       4445566


Q ss_pred             cCCCCcEEEeeccc-ccc-ccccccccc-----ccccceEEecccccCCccCc--cCCCCCcccEEEeeCCccccccCCc
Q 048125           98 NASRLELLQISDNN-FGG-MLPEAVGNF-----STRLGILSVAENQLFGNIPS--GLRNLVNLELLDLSGNQFTSRIPGS  168 (258)
Q Consensus        98 ~~~~L~~L~l~~~~-~~~-~~~~~~~~~-----~~~l~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~  168 (258)
                      .+++|++|++++|. +.+ .+|..++.+     .+++++|++++|.+. .+|.  .+..+++|++|++++|.+.+..| .
T Consensus       271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~  348 (636)
T 4eco_A          271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A  348 (636)
T ss_dssp             TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred             cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence            66777777777776 555 556555443     136667777666666 5555  56666666666666666664455 5


Q ss_pred             ccCccCCcEEEecCCccccccCCCCCCCCC-cceEecccccccccCCcccccCc--CCcEEeccCCccccccccccc---
Q 048125          169 IGDLQKLQMLGLNGNKFLGEIPSSIGNLTL-LMTLNFAENMLEGSIPSSLGKCQ--NLIVLDLYNNNLSGTIPSEVI---  242 (258)
Q Consensus       169 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~--~L~~L~l~~~~l~~~~~~~~~---  242 (258)
                      +..+++|++|++++|.+. .+|..+..+++ |++|++++|.+. .+|..+...+  +|+.|++++|++.+.+|..+.   
T Consensus       349 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~  426 (636)
T 4eco_A          349 FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD  426 (636)
T ss_dssp             CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC
T ss_pred             hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccc
Confidence            566666666666666665 55555655655 666666666655 4554444432  555555555555555554444   


Q ss_pred             ----cccCcceeEecCCCC
Q 048125          243 ----GLSSLSIYLDLSQNQ  257 (258)
Q Consensus       243 ----~~~~l~~~L~l~~n~  257 (258)
                          .++++ ++|++++|.
T Consensus       427 ~~~~~~~~L-~~L~Ls~N~  444 (636)
T 4eco_A          427 PTPFKGINV-SSINLSNNQ  444 (636)
T ss_dssp             SSCCCCCCE-EEEECCSSC
T ss_pred             cccccCCCC-CEEECcCCc
Confidence                44455 555555554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.96  E-value=1.3e-28  Score=213.65  Aligned_cols=247  Identities=21%  Similarity=0.246  Sum_probs=170.8

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCC-CccccCCcceEEecccc
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVP-SLENLHKLQRVIISQNH   80 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~   80 (258)
                      |++++|.++ .++...+.++++|++|++.+|.++ .+|..+.++++|++|++++|.+....+ .+..+++|++|++++|.
T Consensus       259 L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  336 (606)
T 3t6q_A          259 INLQKHYFF-NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT  336 (606)
T ss_dssp             EECTTCCCS-SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCS
T ss_pred             EEeecCccC-ccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCC
Confidence            567788888 566665557999999999999988 677888999999999999999987655 48889999999999997


Q ss_pred             ccCcCCCccchhhhccccCCCCcEEEeecccccccc--cccccccccccceEEecccccCCccCccCCCCCcccEEEeeC
Q 048125           81 LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGML--PEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSG  158 (258)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  158 (258)
                      +.....      ...+..+++|++|++++|.+.+..  +..+..+ ++++.|++++|.+....+..+..+++|++|++++
T Consensus       337 ~~~~~~------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  409 (606)
T 3t6q_A          337 KRLELG------TGCLENLENLRELDLSHDDIETSDCCNLQLRNL-SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF  409 (606)
T ss_dssp             SCCBCC------SSTTTTCTTCCEEECCSSCCCEEEESTTTTTTC-TTCCEEECCSCSCEEECTTTTTTCTTCSEEECTT
T ss_pred             cccccc------hhhhhccCcCCEEECCCCccccccCcchhcccC-CCCCEEECCCCcCCcCCHHHhcCCccCCeEECCC
Confidence            763111      123556777777777777665332  3334433 4677777777766555566666667777777777


Q ss_pred             CccccccC-CcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccc---cCCcccccCcCCcEEeccCCccc
Q 048125          159 NQFTSRIP-GSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEG---SIPSSLGKCQNLIVLDLYNNNLS  234 (258)
Q Consensus       159 ~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~---~~~~~~~~~~~L~~L~l~~~~l~  234 (258)
                      |.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+   ..+..+..+++|+.|++++|+++
T Consensus       410 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~  489 (606)
T 3t6q_A          410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS  489 (606)
T ss_dssp             CCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCC
T ss_pred             CcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccC
Confidence            76654433 336666777777777777665556666667777777777776654   12244566666777777777766


Q ss_pred             cccccccccccCcceeEecCCCCC
Q 048125          235 GTIPSEVIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       235 ~~~~~~~~~~~~l~~~L~l~~n~~  258 (258)
                      +..|..+..++.+ ++|++++|.+
T Consensus       490 ~~~~~~~~~l~~L-~~L~Ls~N~l  512 (606)
T 3t6q_A          490 SIDQHAFTSLKMM-NHVDLSHNRL  512 (606)
T ss_dssp             EECTTTTTTCTTC-CEEECCSSCC
T ss_pred             ccChhhhccccCC-CEEECCCCcc
Confidence            5556666666666 6777766653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=8.4e-29  Score=199.77  Aligned_cols=239  Identities=23%  Similarity=0.269  Sum_probs=117.7

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccc
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHL   81 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~   81 (258)
                      |++++|.++ .++...+.++++|++|++.+|.+++..+..|.++++|++|++++|.+...+..+.  ++|++|++++|.+
T Consensus        59 L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i  135 (332)
T 2ft3_A           59 LDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRI  135 (332)
T ss_dssp             EECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCC
T ss_pred             EECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCcc
Confidence            344455555 2222222245555555555555554445555555555555555555544333322  4555555555555


Q ss_pred             cCcCCCccchhhhccccCCCCcEEEeecccccc--cccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCC
Q 048125           82 GNYGEKDNLEFVNSLVNASRLELLQISDNNFGG--MLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGN  159 (258)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  159 (258)
                      ....       ...+..+++|+.|++++|.+..  ..+..+...  +++.|++++|.+.. +|..+.  ++|++|++++|
T Consensus       136 ~~~~-------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l--~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n  203 (332)
T 2ft3_A          136 RKVP-------KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL--KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHN  203 (332)
T ss_dssp             CCCC-------SGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC--CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSS
T ss_pred             CccC-------HhHhCCCccCCEEECCCCccccCCCCcccccCC--ccCEEECcCCCCCc-cCcccc--CCCCEEECCCC
Confidence            4321       1235556666666666665531  222222221  44444444444431 222221  35555555555


Q ss_pred             ccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCcccccccc
Q 048125          160 QFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPS  239 (258)
Q Consensus       160 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~  239 (258)
                      .+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .+|..+..+++|+.|++++|++++..+.
T Consensus       204 ~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~  282 (332)
T 2ft3_A          204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVN  282 (332)
T ss_dssp             CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTT
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChh
Confidence            555444455555555555555555555444445555555555666555555 4455555555555566655555533333


Q ss_pred             cccc------ccCcceeEecCCCC
Q 048125          240 EVIG------LSSLSIYLDLSQNQ  257 (258)
Q Consensus       240 ~~~~------~~~l~~~L~l~~n~  257 (258)
                      .|..      .+.+ ..|++++|+
T Consensus       283 ~~~~~~~~~~~~~l-~~L~l~~N~  305 (332)
T 2ft3_A          283 DFCPVGFGVKRAYY-NGISLFNNP  305 (332)
T ss_dssp             SSSCSSCCSSSCCB-SEEECCSSS
T ss_pred             Hccccccccccccc-cceEeecCc
Confidence            3322      1334 555555554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=2.1e-28  Score=197.26  Aligned_cols=237  Identities=24%  Similarity=0.332  Sum_probs=200.2

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCC-CccccCCcceEEecccc
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVP-SLENLHKLQRVIISQNH   80 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~   80 (258)
                      +++.++.++ .+|..+   .+++++|++.+|.+++..+..|.++++|++|++++|.+....+ .+..+++|++|++++|.
T Consensus        36 l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  111 (330)
T 1xku_A           36 VQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ  111 (330)
T ss_dssp             EECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred             EEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc
Confidence            456677777 788755   3689999999999998777789999999999999999987744 48899999999999999


Q ss_pred             ccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCC--ccCccCCCCCcccEEEeeC
Q 048125           81 LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFG--NIPSGLRNLVNLELLDLSG  158 (258)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~  158 (258)
                      ++..+..        +  .++|++|++++|.+.+..+..+..+ ++++.|++++|.+..  ..+..+..+++|++|++++
T Consensus       112 l~~l~~~--------~--~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~  180 (330)
T 1xku_A          112 LKELPEK--------M--PKTLQELRVHENEITKVRKSVFNGL-NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD  180 (330)
T ss_dssp             CSBCCSS--------C--CTTCCEEECCSSCCCBBCHHHHTTC-TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred             CCccChh--------h--cccccEEECCCCcccccCHhHhcCC-ccccEEECCCCcCCccCcChhhccCCCCcCEEECCC
Confidence            8754322        2  2789999999999885544445554 689999999998753  4566788899999999999


Q ss_pred             CccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccc
Q 048125          159 NQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIP  238 (258)
Q Consensus       159 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~  238 (258)
                      |.+.. .|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|+++ .+|
T Consensus       181 n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp  256 (330)
T 1xku_A          181 TNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVP  256 (330)
T ss_dssp             SCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCC
T ss_pred             Ccccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCC
Confidence            99984 444433  78999999999999877889999999999999999999877778899999999999999999 889


Q ss_pred             cccccccCcceeEecCCCCC
Q 048125          239 SEVIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       239 ~~~~~~~~l~~~L~l~~n~~  258 (258)
                      .++..++.+ ++|++++|++
T Consensus       257 ~~l~~l~~L-~~L~l~~N~i  275 (330)
T 1xku_A          257 GGLADHKYI-QVVYLHNNNI  275 (330)
T ss_dssp             TTTTTCSSC-CEEECCSSCC
T ss_pred             hhhccCCCc-CEEECCCCcC
Confidence            999999999 9999999975

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=1.2e-28  Score=198.37  Aligned_cols=227  Identities=18%  Similarity=0.228  Sum_probs=197.2

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccc
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHL   81 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~   81 (258)
                      |++++|.++ .+|..++. +++|++|++.+|.++ .+|..+.++++|++|++++|.+...+..+..+++|++|++++|.+
T Consensus        86 L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~  162 (328)
T 4fcg_A           86 LELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPE  162 (328)
T ss_dssp             EEEESSCCS-SCCSCGGG-GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETT
T ss_pred             EEccCCCch-hcChhhhh-CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCC
Confidence            678899999 99998885 999999999999998 788889999999999999999997666689999999999999876


Q ss_pred             cCcCCCc--cchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCC
Q 048125           82 GNYGEKD--NLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGN  159 (258)
Q Consensus        82 ~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  159 (258)
                      .......  ...+...+..+++|++|++++|.+. .+|..+..+ ++|+.|++++|.+. .++..+..+++|++|++++|
T Consensus       163 ~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l-~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n  239 (328)
T 4fcg_A          163 LTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANL-QNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGC  239 (328)
T ss_dssp             CCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGC-TTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTC
T ss_pred             ccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCC-CCCCEEEccCCCCC-cCchhhccCCCCCEEECcCC
Confidence            5422110  0011223456999999999999998 788777766 58999999999988 56667889999999999999


Q ss_pred             ccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccc
Q 048125          160 QFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLS  234 (258)
Q Consensus       160 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~  234 (258)
                      .+.+..|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..++.+++|+.+++..+.+.
T Consensus       240 ~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             TTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             cchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            988888999999999999999999998899999999999999999999999999999999999999999987765

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.96  E-value=1.5e-28  Score=202.49  Aligned_cols=219  Identities=20%  Similarity=0.208  Sum_probs=146.1

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEecccc
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNH   80 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~   80 (258)
                      |++++|.++ .++...+.++++|++|++.+|.+++..+..+.++++|++|++++|.+...+.. +..+++|++|++++|.
T Consensus        74 L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~  152 (390)
T 3o6n_A           74 LNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN  152 (390)
T ss_dssp             EECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc
Confidence            455556555 33332233466666666666666555555555566666666666655544443 3555556666665555


Q ss_pred             ccCcCCCccchhhhccccCCCCcEEEeec---------------------------------------------------
Q 048125           81 LGNYGEKDNLEFVNSLVNASRLELLQISD---------------------------------------------------  109 (258)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~---------------------------------------------------  109 (258)
                      +.....       ..+..+++|++|++++                                                   
T Consensus       153 l~~~~~-------~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~  225 (390)
T 3o6n_A          153 LERIED-------DTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN  225 (390)
T ss_dssp             CCBCCT-------TTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCC
T ss_pred             cCccCh-------hhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecccccc
Confidence            543221       1222333333333333                                                   


Q ss_pred             ----------ccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEE
Q 048125          110 ----------NNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLG  179 (258)
Q Consensus       110 ----------~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  179 (258)
                                |.+.+ . ..+..+ ++++.|++++|.+....+..+..+++|++|++++|.+.. .+..+..+++|++|+
T Consensus       226 ~~L~~L~l~~n~l~~-~-~~l~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~  301 (390)
T 3o6n_A          226 VELTILKLQHNNLTD-T-AWLLNY-PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLD  301 (390)
T ss_dssp             SSCCEEECCSSCCCC-C-GGGGGC-TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEE
T ss_pred             ccccEEECCCCCCcc-c-HHHcCC-CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEE
Confidence                      33321 1 122333 578999999998886678889999999999999999984 555667899999999


Q ss_pred             ecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccc
Q 048125          180 LNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGT  236 (258)
Q Consensus       180 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  236 (258)
                      +++|.+. .+|..+..+++|+.|++++|.+.+. +  +..+++|+.|++++|.+.+.
T Consensus       302 L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          302 LSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             CCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred             CCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence            9999998 6677788899999999999999843 3  67789999999999999853

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=2e-28  Score=197.52  Aligned_cols=236  Identities=25%  Similarity=0.295  Sum_probs=188.0

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEecccc
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNH   80 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~   80 (258)
                      +++.++.++ .+|..+   .++|++|++.+|.+++..+..|.++++|++|++++|.+....+. +..+++|++|++++|.
T Consensus        38 l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  113 (332)
T 2ft3_A           38 VQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH  113 (332)
T ss_dssp             EECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC
T ss_pred             EECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc
Confidence            456677777 777765   35788899988888877777888888999999988888766443 7888889999998888


Q ss_pred             ccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCC--ccCccCCCCCcccEEEeeC
Q 048125           81 LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFG--NIPSGLRNLVNLELLDLSG  158 (258)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~  158 (258)
                      ++..+..        +.  ++|++|++++|.+....+..+..+ ++++.|++++|.+..  ..+..+..+ +|++|++++
T Consensus       114 l~~l~~~--------~~--~~L~~L~l~~n~i~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~  181 (332)
T 2ft3_A          114 LVEIPPN--------LP--SSLVELRIHDNRIRKVPKGVFSGL-RNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE  181 (332)
T ss_dssp             CCSCCSS--------CC--TTCCEEECCSSCCCCCCSGGGSSC-SSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS
T ss_pred             CCccCcc--------cc--ccCCEEECCCCccCccCHhHhCCC-ccCCEEECCCCccccCCCCcccccCC-ccCEEECcC
Confidence            8754322        22  688899999888873333334444 588899998887753  345566666 888899998


Q ss_pred             CccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccc
Q 048125          159 NQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIP  238 (258)
Q Consensus       159 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~  238 (258)
                      |.+.. .|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|+++ .+|
T Consensus       182 n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp  257 (332)
T 2ft3_A          182 AKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVP  257 (332)
T ss_dssp             SBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCC
T ss_pred             CCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecC
Confidence            88874 444333  68999999999999777788999999999999999999777778999999999999999999 899


Q ss_pred             cccccccCcceeEecCCCCC
Q 048125          239 SEVIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       239 ~~~~~~~~l~~~L~l~~n~~  258 (258)
                      ..+..++.+ ++|++++|++
T Consensus       258 ~~l~~l~~L-~~L~l~~N~l  276 (332)
T 2ft3_A          258 AGLPDLKLL-QVVYLHTNNI  276 (332)
T ss_dssp             TTGGGCTTC-CEEECCSSCC
T ss_pred             hhhhcCccC-CEEECCCCCC
Confidence            999999999 9999999975

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=2.1e-28  Score=211.89  Aligned_cols=125  Identities=23%  Similarity=0.317  Sum_probs=67.6

Q ss_pred             CCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEecccccc
Q 048125            4 FPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNHLG   82 (258)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~   82 (258)
                      +.+|.++ .+|..++.++++|++|++.+|.+++..+..|..+++|++|++++|.+...++. +..+++|++|++++|.++
T Consensus        58 l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  136 (597)
T 3oja_B           58 FKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS  136 (597)
T ss_dssp             ESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             eeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC
Confidence            4445555 55555555566666666666666655555666666666666666666555444 456666666666666655


Q ss_pred             CcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEeccccc
Q 048125           83 NYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQL  137 (258)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~  137 (258)
                      ..+..       .+..+++|++|++++|.+.+..+..+..+ ++|+.|++++|.+
T Consensus       137 ~l~~~-------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~l  183 (597)
T 3oja_B          137 SLPRG-------IFHNTPKLTTLSMSNNNLERIEDDTFQAT-TSLQNLQLSSNRL  183 (597)
T ss_dssp             CCCTT-------TTTTCTTCCEEECCSSCCCBCCTTTTTTC-TTCCEEECTTSCC
T ss_pred             CCCHH-------HhccCCCCCEEEeeCCcCCCCChhhhhcC-CcCcEEECcCCCC
Confidence            32211       23445555555555555543333333332 3455555544443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=6.2e-29  Score=202.19  Aligned_cols=241  Identities=22%  Similarity=0.271  Sum_probs=164.3

Q ss_pred             CCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEecccccc
Q 048125            4 FPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNHLG   82 (258)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~   82 (258)
                      .+++.++ ++|..+.   ++|++|++.++.+++..+..+.++++|++|++++|.+....+. +..+++|++|++++|.++
T Consensus        38 ~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  113 (353)
T 2z80_A           38 GSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS  113 (353)
T ss_dssp             CCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC
Confidence            4455666 6676543   4677777777777765555677777777777777777665443 677777777777777776


Q ss_pred             CcCCCccchhhhccccCCCCcEEEeecccccccccc-cccccccccceEEecccc-cCCccCccCCCCCcccEEEeeCCc
Q 048125           83 NYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPE-AVGNFSTRLGILSVAENQ-LFGNIPSGLRNLVNLELLDLSGNQ  160 (258)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~  160 (258)
                      ...       ...+..+++|++|++++|.+. .++. ......++++.|++++|. +....+..+..+++|++|++++|.
T Consensus       114 ~~~-------~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  185 (353)
T 2z80_A          114 NLS-------SSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD  185 (353)
T ss_dssp             SCC-------HHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             cCC-------HhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence            421       123566777777777777766 3443 222223577777777763 443345566677777777777777


Q ss_pred             cccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEeccccccccc----------------------------
Q 048125          161 FTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGS----------------------------  212 (258)
Q Consensus       161 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~----------------------------  212 (258)
                      +.+..+..+..+++|++|++++|.+.......+..+++|+.|++++|.+.+.                            
T Consensus       186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~  265 (353)
T 2z80_A          186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES  265 (353)
T ss_dssp             CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred             cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcc
Confidence            7766677777777777777777776532222234466777777777776542                            


Q ss_pred             ---CCcccccCcCCcEEeccCCccccccccc-cccccCcceeEecCCCCC
Q 048125          213 ---IPSSLGKCQNLIVLDLYNNNLSGTIPSE-VIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       213 ---~~~~~~~~~~L~~L~l~~~~l~~~~~~~-~~~~~~l~~~L~l~~n~~  258 (258)
                         +|..+..+++|+.|++++|+++ .+|.. +..++++ ++|++++|++
T Consensus       266 l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L-~~L~L~~N~~  313 (353)
T 2z80_A          266 LFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSL-QKIWLHTNPW  313 (353)
T ss_dssp             HHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTC-CEEECCSSCB
T ss_pred             hhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCC-CEEEeeCCCc
Confidence               3445677899999999999999 67765 5789999 9999999985

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.96  E-value=1.4e-28  Score=213.58  Aligned_cols=246  Identities=18%  Similarity=0.191  Sum_probs=160.0

Q ss_pred             CCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEecccccc
Q 048125            3 DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLG   82 (258)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~   82 (258)
                      ++.++.++ .+| .+. .+++|++|++.+|.+. .+| .+ .+++|++|++++|...... .+..+++|++|++++|.++
T Consensus       291 ~l~~~~~~-~l~-~l~-~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~  363 (606)
T 3vq2_A          291 SLAGVSIK-YLE-DVP-KHFKWQSLSIIRCQLK-QFP-TL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALS  363 (606)
T ss_dssp             EEESCCCC-CCC-CCC-TTCCCSEEEEESCCCS-SCC-CC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEE
T ss_pred             EecCccch-hhh-hcc-ccccCCEEEcccccCc-ccc-cC-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccC
Confidence            44455554 455 233 3566666666666553 344 23 5555555555555332211 2334445555555554443


Q ss_pred             CcCCCc------------------cchhhhccccCCCCcEEEeeccccccccc-ccccccccccceEEecccccCCccCc
Q 048125           83 NYGEKD------------------NLEFVNSLVNASRLELLQISDNNFGGMLP-EAVGNFSTRLGILSVAENQLFGNIPS  143 (258)
Q Consensus        83 ~~~~~~------------------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~~~~~~~~~~  143 (258)
                      ..+...                  ...++..+..+++|+.|++++|.+.+..+ ..+..+ ++++.|++++|.+....+.
T Consensus       364 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~  442 (606)
T 3vq2_A          364 FSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL-EKLLYLDISYTNTKIDFDG  442 (606)
T ss_dssp             EEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTC-TTCCEEECTTSCCEECCTT
T ss_pred             CCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhcc-ccCCEEECcCCCCCccchh
Confidence            221000                  00122355667777777777777765544 233333 5788888888877666677


Q ss_pred             cCCCCCcccEEEeeCCcccc-ccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcC
Q 048125          144 GLRNLVNLELLDLSGNQFTS-RIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQN  222 (258)
Q Consensus       144 ~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  222 (258)
                      .+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..|..++.+++
T Consensus       443 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  522 (606)
T 3vq2_A          443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS  522 (606)
T ss_dssp             TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTT
T ss_pred             hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCc
Confidence            77778888888888888775 36777788888888888888888777777888888888888888888777778888888


Q ss_pred             CcEEeccCCccccccccccccccC-cceeEecCCCCC
Q 048125          223 LIVLDLYNNNLSGTIPSEVIGLSS-LSIYLDLSQNQL  258 (258)
Q Consensus       223 L~~L~l~~~~l~~~~~~~~~~~~~-l~~~L~l~~n~~  258 (258)
                      |+.|++++|+++ .+|..+..++. + ++|++++|++
T Consensus       523 L~~L~l~~N~l~-~~p~~~~~l~~~L-~~l~l~~N~~  557 (606)
T 3vq2_A          523 LSTLDCSFNRIE-TSKGILQHFPKSL-AFFNLTNNSV  557 (606)
T ss_dssp             CCEEECTTSCCC-CEESCGGGSCTTC-CEEECCSCCC
T ss_pred             CCEEECCCCcCc-ccCHhHhhhcccC-cEEEccCCCc
Confidence            888888888888 67777777764 7 8888888875

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=2.7e-28  Score=212.51  Aligned_cols=246  Identities=19%  Similarity=0.282  Sum_probs=145.5

Q ss_pred             CCCCcCcccCCCCc--chhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCC-cceEEecc
Q 048125            2 FDFPFNQLQGSLPS--DLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHK-LQRVIISQ   78 (258)
Q Consensus         2 l~~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~-L~~L~l~~   78 (258)
                      |++++|.++ .+|.  .+. ++++|++|++.+|.+++.+| .+..+++|++|++++|.+...+..+..+++ |++|++++
T Consensus       310 L~L~~n~l~-~ip~~~~l~-~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~  386 (636)
T 4eco_A          310 IYIGYNNLK-TFPVETSLQ-KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH  386 (636)
T ss_dssp             EECCSSCCS-SCCCHHHHT-TCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCS
T ss_pred             EECCCCcCC-ccCchhhhc-cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccC
Confidence            456677777 6776  444 47777777777777765566 666666666666666666644444666666 66666666


Q ss_pred             ccccCcCCCccc------------------hhhhccc-------cCCCCcEEEeecccccccccccccccccccceEEec
Q 048125           79 NHLGNYGEKDNL------------------EFVNSLV-------NASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVA  133 (258)
Q Consensus        79 ~~~~~~~~~~~~------------------~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~  133 (258)
                      |.++.++.....                  ..+..+.       .+++|++|++++|.+. .+|..++...++++.|+++
T Consensus       387 N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls  465 (636)
T 4eco_A          387 NKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLM  465 (636)
T ss_dssp             SCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECC
T ss_pred             CcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECC
Confidence            666533221000                  0011122       3445556666666555 4444444333456666666


Q ss_pred             ccccCCccCcc-CCCC-------CcccEEEeeCCccccccCCccc--CccCCcEEEecCCccccccCCCCCCCCCcceEe
Q 048125          134 ENQLFGNIPSG-LRNL-------VNLELLDLSGNQFTSRIPGSIG--DLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLN  203 (258)
Q Consensus       134 ~~~~~~~~~~~-~~~~-------~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  203 (258)
                      +|.+. .+|.. +...       ++|++|++++|.+. ..|..+.  .+++|++|++++|.+.+ +|..+..+++|++|+
T Consensus       466 ~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~  542 (636)
T 4eco_A          466 GNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFG  542 (636)
T ss_dssp             SSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEE
T ss_pred             CCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEE
Confidence            66655 33332 2211       26667777776666 4455554  66677777777777664 666666677777777


Q ss_pred             c------ccccccccCCcccccCcCCcEEeccCCccccccccccccccCcceeEecCCCCC
Q 048125          204 F------AENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       204 l------~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~  258 (258)
                      +      ++|.+.+.+|..++.+++|+.|++++|++. .+|..+.  +.+ ++|+|++|++
T Consensus       543 Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L-~~L~Ls~N~l  599 (636)
T 4eco_A          543 IRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNI-SVLDIKDNPN  599 (636)
T ss_dssp             CCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTC-CEEECCSCTT
T ss_pred             CCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcC-CEEECcCCCC
Confidence            7      345555566666667777777777777773 6666544  566 7777777754

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=2.1e-27  Score=187.64  Aligned_cols=220  Identities=24%  Similarity=0.266  Sum_probs=128.0

Q ss_pred             CCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCC-CccccCCcceEEecccc-
Q 048125            3 DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVP-SLENLHKLQRVIISQNH-   80 (258)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~-   80 (258)
                      +..++.++ .+|..+   .++|++|++.++.+++..+..|..+++|++|++++|.+....+ .+..+++|++|++++|. 
T Consensus        17 ~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~   92 (285)
T 1ozn_A           17 SCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (285)
T ss_dssp             ECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence            34455555 555432   3466666666666665555556666666666666666655433 25666666666666665 


Q ss_pred             ccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCc
Q 048125           81 LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQ  160 (258)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  160 (258)
                      +....       +..+..+++|++|++++|.+.+..+..+..+ ++|++|++++|.+....+..+..+++|++|++++|.
T Consensus        93 l~~~~-------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  164 (285)
T 1ozn_A           93 LRSVD-------PATFHGLGRLHTLHLDRCGLQELGPGLFRGL-AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR  164 (285)
T ss_dssp             CCCCC-------TTTTTTCTTCCEEECTTSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccccC-------HHHhcCCcCCCEEECCCCcCCEECHhHhhCC-cCCCEEECCCCcccccCHhHhccCCCccEEECCCCc
Confidence            44321       2245556666666666666653333333333 356666666666554444445556666666666666


Q ss_pred             cccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccc
Q 048125          161 FTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLS  234 (258)
Q Consensus       161 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~  234 (258)
                      +....+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus       165 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            65444445666666666666666666555566666666666666666666444444556666666666666655

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=9.5e-28  Score=207.83  Aligned_cols=241  Identities=20%  Similarity=0.212  Sum_probs=162.3

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEecccc
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNH   80 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~   80 (258)
                      |++++|.+++..|..+. ++++|++|++.+|.+++..+..|.++++|++|++++|.+...+.. +..+++|++|++++|.
T Consensus        80 L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~  158 (597)
T 3oja_B           80 LNLNDLQIEEIDTYAFA-YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN  158 (597)
T ss_dssp             EECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCCCCCCChHHhc-CCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc
Confidence            67778888844444444 688888888888888877777778888888888888888776665 5788888888888888


Q ss_pred             ccCcCCCccchhhhccccCCCCcEEEeeccccccccccccc------------------------------------ccc
Q 048125           81 LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVG------------------------------------NFS  124 (258)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~------------------------------------~~~  124 (258)
                      ++...       +..+..+++|++|++++|.+.+.....+.                                    ...
T Consensus       159 l~~~~-------~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~  231 (597)
T 3oja_B          159 LERIE-------DDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN  231 (597)
T ss_dssp             CCBCC-------TTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCC
T ss_pred             CCCCC-------hhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccC
Confidence            77532       23466677777777777766532111100                                    001


Q ss_pred             cccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEec
Q 048125          125 TRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNF  204 (258)
Q Consensus       125 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  204 (258)
                      ++++.|++++|.+..  +..+..+++|++|++++|.+.+..|..|..+++|++|++++|.+.+ +|..+..+++|+.|++
T Consensus       232 ~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L  308 (597)
T 3oja_B          232 VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDL  308 (597)
T ss_dssp             SCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEEC
T ss_pred             CCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEEC
Confidence            234444444444432  2445566777777777777776667777777777777777777763 4555566777777777


Q ss_pred             ccccccccCCcccccCcCCcEEeccCCccccccccccccccCcceeEecCCCCC
Q 048125          205 AENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       205 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~  258 (258)
                      ++|.+. .+|..+..+++|+.|++++|.+.+ ++  +..++.| ++|+|++|++
T Consensus       309 s~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~-~~--~~~~~~L-~~L~l~~N~~  357 (597)
T 3oja_B          309 SHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTL-KNLTLSHNDW  357 (597)
T ss_dssp             CSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCC-SEEECCSSCE
T ss_pred             CCCCCC-ccCcccccCCCCCEEECCCCCCCC-cC--hhhcCCC-CEEEeeCCCC
Confidence            777776 566666677777777777777763 33  4556777 7778877764

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.95  E-value=1.8e-27  Score=203.10  Aligned_cols=103  Identities=17%  Similarity=0.129  Sum_probs=62.1

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccc
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHL   81 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~   81 (258)
                      |++++|.++ .++...+.++++|++|++++|.+++..|..|.++++|++|++++|.+...+..  .+++|++|++++|.+
T Consensus        26 L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l  102 (520)
T 2z7x_B           26 LNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAF  102 (520)
T ss_dssp             EECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCC
T ss_pred             EECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCcc
Confidence            456666666 33332333577777777777777666666677777777777777766644333  566677777777666


Q ss_pred             cCcCCCccchhhhccccCCCCcEEEeeccccc
Q 048125           82 GNYGEKDNLEFVNSLVNASRLELLQISDNNFG  113 (258)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  113 (258)
                      +..      ..+..+..+++|++|++++|.+.
T Consensus       103 ~~~------~~p~~~~~l~~L~~L~L~~n~l~  128 (520)
T 2z7x_B          103 DAL------PICKEFGNMSQLKFLGLSTTHLE  128 (520)
T ss_dssp             SSC------CCCGGGGGCTTCCEEEEEESSCC
T ss_pred             ccc------cchhhhccCCcceEEEecCcccc
Confidence            542      12334555666666666665543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=4.5e-28  Score=193.38  Aligned_cols=227  Identities=24%  Similarity=0.301  Sum_probs=196.0

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCccccc--ccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccc
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGP--IPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQN   79 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~   79 (258)
                      |++++|.++ .+|..++.++++|++|++.+|.++..  .+..+.++++|++|++++|.+...+..+..+++|++|++++|
T Consensus        33 L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n  111 (306)
T 2z66_A           33 LELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS  111 (306)
T ss_dssp             EECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTS
T ss_pred             EECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCC
Confidence            678899999 88888777899999999999988743  356677899999999999999876666889999999999999


Q ss_pred             cccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCC-ccCccCCCCCcccEEEeeC
Q 048125           80 HLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFG-NIPSGLRNLVNLELLDLSG  158 (258)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~  158 (258)
                      .++....      ...+..+++|++|++++|.+.+..+..+..+ +++++|++++|.+.. ..+..+..+++|++|++++
T Consensus       112 ~l~~~~~------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~  184 (306)
T 2z66_A          112 NLKQMSE------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGL-SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ  184 (306)
T ss_dssp             EEESSTT------TTTTTTCTTCCEEECTTSCCEECSTTTTTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred             ccccccc------chhhhhccCCCEEECCCCcCCccchhhcccC-cCCCEEECCCCccccccchhHHhhCcCCCEEECCC
Confidence            9886432      2357788999999999999886666555555 589999999998875 4788889999999999999


Q ss_pred             CccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCc-CCcEEeccCCccccc
Q 048125          159 NQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQ-NLIVLDLYNNNLSGT  236 (258)
Q Consensus       159 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~L~~L~l~~~~l~~~  236 (258)
                      |.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..++ +|+.|++++|.+.+.
T Consensus       185 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             CCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence            999977788999999999999999999876666789999999999999999988888888884 999999999999843

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=2.9e-27  Score=186.80  Aligned_cols=222  Identities=23%  Similarity=0.280  Sum_probs=188.9

Q ss_pred             ceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEeccccccCcCCCccchhhhccccCCCCc
Q 048125           25 EGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLE  103 (258)
Q Consensus        25 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~  103 (258)
                      +++++.+.+++. +|..+  .+++++|++++|.+...... +..+++|++|++++|.++..       .+..+..+++|+
T Consensus        14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~-------~~~~~~~l~~L~   83 (285)
T 1ozn_A           14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-------DAAAFTGLALLE   83 (285)
T ss_dssp             CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-------CTTTTTTCTTCC
T ss_pred             eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcccee-------CHhhcCCccCCC
Confidence            678888877773 45443  47899999999999887755 88999999999999988753       234678899999


Q ss_pred             EEEeeccc-ccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecC
Q 048125          104 LLQISDNN-FGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNG  182 (258)
Q Consensus       104 ~L~l~~~~-~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  182 (258)
                      +|++++|. +....+..+..+ ++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus        84 ~L~l~~n~~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  162 (285)
T 1ozn_A           84 QLDLSDNAQLRSVDPATFHGL-GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG  162 (285)
T ss_dssp             EEECCSCTTCCCCCTTTTTTC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             EEeCCCCCCccccCHHHhcCC-cCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCC
Confidence            99999997 663335555544 6899999999998866678888999999999999999877777789999999999999


Q ss_pred             CccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccccccccCcceeEecCCCCC
Q 048125          183 NKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       183 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~  258 (258)
                      |.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++++..+..+..++.+ ++|++++|++
T Consensus       163 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~N~~  237 (285)
T 1ozn_A          163 NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL-QYLRLNDNPW  237 (285)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTC-CEEECCSSCE
T ss_pred             CcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCccc-CEEeccCCCc
Confidence            99986666679999999999999999998889999999999999999999996555678899999 9999999975

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.95  E-value=2.5e-28  Score=195.75  Aligned_cols=233  Identities=18%  Similarity=0.174  Sum_probs=191.9

Q ss_pred             CCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEecccccc
Q 048125            3 DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLG   82 (258)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~   82 (258)
                      ++..+.+. +.+..++..+++|++|++++|.+++..+..|.++++|++|++++|.+....+ +..+++|++|++++|.++
T Consensus        16 ~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~   93 (317)
T 3o53_A           16 KVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ   93 (317)
T ss_dssp             SCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEE
T ss_pred             eccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccc
Confidence            44555555 4555666668899999999999998878889999999999999999876554 888999999999999887


Q ss_pred             CcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccc
Q 048125           83 NYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFT  162 (258)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  162 (258)
                      ..            ...++|++|++++|.+.+..+..    .++++.|++++|.+....+..+..+++|++|++++|.+.
T Consensus        94 ~l------------~~~~~L~~L~l~~n~l~~~~~~~----~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  157 (317)
T 3o53_A           94 EL------------LVGPSIETLHAANNNISRVSCSR----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID  157 (317)
T ss_dssp             EE------------EECTTCCEEECCSSCCSEEEECC----CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC
T ss_pred             cc------------cCCCCcCEEECCCCccCCcCccc----cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC
Confidence            42            23489999999999887443322    257999999999988666677888899999999999998


Q ss_pred             cccCCcc-cCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCcccccccccc
Q 048125          163 SRIPGSI-GDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEV  241 (258)
Q Consensus       163 ~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~  241 (258)
                      +..+..+ ..+++|++|++++|.+++. +. ...+++|++|++++|.+.+ ++..+..+++|+.|++++|+++ .+|..+
T Consensus       158 ~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~  233 (317)
T 3o53_A          158 TVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKAL  233 (317)
T ss_dssp             EEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTC
T ss_pred             cccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHh
Confidence            7666665 4689999999999999854 32 3348999999999999985 4555888999999999999999 688888


Q ss_pred             ccccCcceeEecCCCCC
Q 048125          242 IGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       242 ~~~~~l~~~L~l~~n~~  258 (258)
                      ..++.+ ++|++++|++
T Consensus       234 ~~l~~L-~~L~l~~N~~  249 (317)
T 3o53_A          234 RFSQNL-EHFDLRGNGF  249 (317)
T ss_dssp             CCCTTC-CEEECTTCCC
T ss_pred             hcCCCC-CEEEccCCCc
Confidence            899999 9999999985

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.95  E-value=1.8e-27  Score=206.64  Aligned_cols=245  Identities=22%  Similarity=0.181  Sum_probs=189.4

Q ss_pred             CcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCc
Q 048125            5 PFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNY   84 (258)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~   84 (258)
                      ..+.+.+.+|.  +..+++|+++++.++.+.. ++ .+..+++|++|++++|.+...+ .+ .+++|++|++++|.....
T Consensus       270 ~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~  343 (606)
T 3vq2_A          270 YTNDFSDDIVK--FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSIS  343 (606)
T ss_dssp             CCTTCCGGGGS--CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEE
T ss_pred             ccccccccccc--cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccc
Confidence            45677777776  4469999999999999874 45 7889999999999999995544 56 899999999999943221


Q ss_pred             CCCc------cc--------h---hhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccC-ccCC
Q 048125           85 GEKD------NL--------E---FVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIP-SGLR  146 (258)
Q Consensus        85 ~~~~------~~--------~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~~~  146 (258)
                      ....      .+        .   .+..+..+++|++|++++|.+. .++..+..+ ++++.|++++|.+....+ ..+.
T Consensus       344 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~  421 (606)
T 3vq2_A          344 FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGL-EELQHLDFQHSTLKRVTEFSAFL  421 (606)
T ss_dssp             CCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTC-TTCCEEECTTSEEESTTTTTTTT
T ss_pred             hhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCC-CCCCeeECCCCccCCccChhhhh
Confidence            1000      00        0   1233445566666666666655 344444444 478888888887765555 5677


Q ss_pred             CCCcccEEEeeCCccccccCCcccCccCCcEEEecCCcccc-ccCCCCCCCCCcceEecccccccccCCcccccCcCCcE
Q 048125          147 NLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLG-EIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIV  225 (258)
Q Consensus       147 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  225 (258)
                      .+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..++.+++|++|++++|.+.+..|..+..+++|+.
T Consensus       422 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  501 (606)
T 3vq2_A          422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL  501 (606)
T ss_dssp             TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             ccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCE
Confidence            88889999999988887778888889999999999998886 47888899999999999999998888888889999999


Q ss_pred             EeccCCccccccccccccccCcceeEecCCCCC
Q 048125          226 LDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       226 L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~  258 (258)
                      |++++|++++..|..+..++++ ++|+|++|.+
T Consensus       502 L~Ls~N~l~~~~~~~~~~l~~L-~~L~l~~N~l  533 (606)
T 3vq2_A          502 LNMSHNNLLFLDSSHYNQLYSL-STLDCSFNRI  533 (606)
T ss_dssp             EECCSSCCSCEEGGGTTTCTTC-CEEECTTSCC
T ss_pred             EECCCCcCCCcCHHHccCCCcC-CEEECCCCcC
Confidence            9999999998778889999999 9999999875

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.95  E-value=4.2e-27  Score=202.55  Aligned_cols=103  Identities=17%  Similarity=0.151  Sum_probs=57.1

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccc
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHL   81 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~   81 (258)
                      |++++|.++ .++...+.++++|++|++.+|.+++..|..|.++++|++|++++|.+...+..  .+++|++|++++|.+
T Consensus        57 L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l  133 (562)
T 3a79_B           57 LSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDF  133 (562)
T ss_dssp             EECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCC
T ss_pred             EECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCc
Confidence            455566665 33332233466666666666666655555566666666666666665543333  455666666666655


Q ss_pred             cCcCCCccchhhhccccCCCCcEEEeeccccc
Q 048125           82 GNYGEKDNLEFVNSLVNASRLELLQISDNNFG  113 (258)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  113 (258)
                      +...      .+..+..+++|++|++++|.+.
T Consensus       134 ~~l~------~p~~~~~l~~L~~L~L~~n~l~  159 (562)
T 3a79_B          134 DVLP------VCKEFGNLTKLTFLGLSAAKFR  159 (562)
T ss_dssp             SBCC------CCGGGGGCTTCCEEEEECSBCC
T ss_pred             cccC------chHhhcccCcccEEecCCCccc
Confidence            4321      2234556666666666666543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.95  E-value=4.2e-27  Score=211.13  Aligned_cols=250  Identities=23%  Similarity=0.204  Sum_probs=165.8

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCC-CC--ccccCCcceEEecc
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKV-PS--LENLHKLQRVIISQ   78 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~--~~~l~~L~~L~l~~   78 (258)
                      |++++|...+.++...+.++++|++|++++|.+.+..|..|.++++|++|++++|.+.... ..  +..+++|++|++++
T Consensus        53 LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~  132 (844)
T 3j0a_A           53 LELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK  132 (844)
T ss_dssp             EEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEES
T ss_pred             EeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCC
Confidence            3444444443443333335666666666666666555666666666666666666665422 22  56666666666666


Q ss_pred             ccccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccc-c------------------------------cc
Q 048125           79 NHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFS-T------------------------------RL  127 (258)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~------------------------------~l  127 (258)
                      |.+....      ....+..+++|++|++++|.+.+..+..+.... +                              .+
T Consensus       133 N~l~~~~------~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L  206 (844)
T 3j0a_A          133 NQIRSLY------LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL  206 (844)
T ss_dssp             CCCCCCC------CCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCB
T ss_pred             Ccccccc------cchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCce
Confidence            6665421      123466777777777777766543333322110 1                              25


Q ss_pred             ceEEecccccCCccCccC------------------------------------CC--CCcccEEEeeCCccccccCCcc
Q 048125          128 GILSVAENQLFGNIPSGL------------------------------------RN--LVNLELLDLSGNQFTSRIPGSI  169 (258)
Q Consensus       128 ~~L~l~~~~~~~~~~~~~------------------------------------~~--~~~L~~L~l~~~~~~~~~~~~~  169 (258)
                      +.|++++|.+....+..+                                    ..  .+++++|++++|.+....+..|
T Consensus       207 ~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~  286 (844)
T 3j0a_A          207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF  286 (844)
T ss_dssp             SEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS
T ss_pred             eEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhh
Confidence            566666554322211111                                    11  2568888888888877777888


Q ss_pred             cCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccccccccCcce
Q 048125          170 GDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSI  249 (258)
Q Consensus       170 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~  249 (258)
                      ..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+..+..|..+++| +
T Consensus       287 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L-~  365 (844)
T 3j0a_A          287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL-Q  365 (844)
T ss_dssp             SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCC-C
T ss_pred             hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCC-C
Confidence            888899999999998887778888888999999999999887778888889999999999999886666678888888 9


Q ss_pred             eEecCCCCC
Q 048125          250 YLDLSQNQL  258 (258)
Q Consensus       250 ~L~l~~n~~  258 (258)
                      +|++++|.+
T Consensus       366 ~L~Ls~N~l  374 (844)
T 3j0a_A          366 TLDLRDNAL  374 (844)
T ss_dssp             EEEEETCCS
T ss_pred             EEECCCCCC
Confidence            999998864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.95  E-value=1.1e-27  Score=213.12  Aligned_cols=151  Identities=22%  Similarity=0.351  Sum_probs=77.5

Q ss_pred             CCCcEEEeecccccccccc--cccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccC-Cc
Q 048125          100 SRLELLQISDNNFGGMLPE--AVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQK-LQ  176 (258)
Q Consensus       100 ~~L~~L~l~~~~~~~~~~~--~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~  176 (258)
                      ++|+.|++++|.+. .+|.  .+..+ ++|+.|++++|.+. .+| .+..+++|++|++++|.+. ..|..+..+++ |+
T Consensus       548 ~~L~~L~Ls~N~L~-~ip~~~~l~~L-~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~  622 (876)
T 4ecn_A          548 PKIQIFYMGYNNLE-EFPASASLQKM-VKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVE  622 (876)
T ss_dssp             TTCCEEECCSSCCC-BCCCHHHHTTC-TTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCC
T ss_pred             CCccEEEeeCCcCC-ccCChhhhhcC-CCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCC
Confidence            35555555555554 4444  34333 35555555555554 444 4455555555555555555 44444555555 55


Q ss_pred             EEEecCCccccccCCCCCCCCC--cceEecccccccccCCccc---c--cCcCCcEEeccCCccccccccccc-cccCcc
Q 048125          177 MLGLNGNKFLGEIPSSIGNLTL--LMTLNFAENMLEGSIPSSL---G--KCQNLIVLDLYNNNLSGTIPSEVI-GLSSLS  248 (258)
Q Consensus       177 ~L~l~~~~~~~~~~~~~~~~~~--L~~L~l~~n~~~~~~~~~~---~--~~~~L~~L~l~~~~l~~~~~~~~~-~~~~l~  248 (258)
                      .|++++|.+. .+|..+...+.  |+.|++++|.+.+.+|...   .  ..++|+.|++++|++. .+|..+. .++.| 
T Consensus       623 ~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L-  699 (876)
T 4ecn_A          623 GLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPI-  699 (876)
T ss_dssp             EEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCC-
T ss_pred             EEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCC-
Confidence            5555555555 44544444332  5555555555544333221   1  2235666666666666 4444433 55666 


Q ss_pred             eeEecCCCCC
Q 048125          249 IYLDLSQNQL  258 (258)
Q Consensus       249 ~~L~l~~n~~  258 (258)
                      ++|+|++|.+
T Consensus       700 ~~L~Ls~N~L  709 (876)
T 4ecn_A          700 STIILSNNLM  709 (876)
T ss_dssp             SEEECCSCCC
T ss_pred             CEEECCCCcC
Confidence            6777776653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=5.1e-27  Score=196.30  Aligned_cols=223  Identities=23%  Similarity=0.231  Sum_probs=192.9

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEecccc
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNH   80 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~   80 (258)
                      |++++|.++ .++...+.++++|++|++.+|.+++..+..|.++++|++|++++|.+...... +..+++|++|++++|.
T Consensus        69 L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  147 (440)
T 3zyj_A           69 LNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP  147 (440)
T ss_dssp             EECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC
T ss_pred             EEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc
Confidence            678899999 55544455799999999999999988888999999999999999999887765 8899999999999999


Q ss_pred             ccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCc
Q 048125           81 LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQ  160 (258)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  160 (258)
                      +.....       ..+..+++|++|++++|...+.++...+...++|+.|++++|.+. .+| .+..+++|++|++++|.
T Consensus       148 i~~~~~-------~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~  218 (440)
T 3zyj_A          148 IESIPS-------YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNH  218 (440)
T ss_dssp             CCEECT-------TTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSC
T ss_pred             ccccCH-------HHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCc
Confidence            886432       367789999999999965544666544444469999999999887 444 47788999999999999


Q ss_pred             cccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccc
Q 048125          161 FTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLS  234 (258)
Q Consensus       161 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~  234 (258)
                      +....+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus       219 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          219 LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             cCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            99888999999999999999999999888889999999999999999999777778888999999999999875

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=6.5e-27  Score=196.28  Aligned_cols=224  Identities=22%  Similarity=0.216  Sum_probs=193.1

Q ss_pred             CCCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEeccc
Q 048125            1 DFDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQN   79 (258)
Q Consensus         1 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~   79 (258)
                      +|++++|.+++..|..+. ++++|++|++.+|.+++..+..|.++++|++|++++|.+...... +..+++|++|++++|
T Consensus        79 ~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  157 (452)
T 3zyi_A           79 YLNLMENNIQMIQADTFR-HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN  157 (452)
T ss_dssp             EEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC
T ss_pred             EEECcCCcCceECHHHcC-CCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC
Confidence            368899999954455444 799999999999999988888999999999999999999887766 888999999999999


Q ss_pred             cccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCC
Q 048125           80 HLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGN  159 (258)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  159 (258)
                      .+.....       ..+..+++|+.|++++|...+.++...+...++|+.|++++|.+.. ++ .+..+++|++|++++|
T Consensus       158 ~l~~~~~-------~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N  228 (452)
T 3zyi_A          158 PIESIPS-------YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGN  228 (452)
T ss_dssp             CCCEECT-------TTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTS
T ss_pred             CcceeCH-------hHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCC
Confidence            9885432       3677899999999999655446665544444699999999998873 33 4778899999999999


Q ss_pred             ccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccc
Q 048125          160 QFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLS  234 (258)
Q Consensus       160 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~  234 (258)
                      .+.+..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus       229 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          229 HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             CCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             cCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            999888999999999999999999999888889999999999999999999777777888999999999999875

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.95  E-value=6.3e-27  Score=205.73  Aligned_cols=246  Identities=21%  Similarity=0.185  Sum_probs=128.5

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEecccc
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNH   80 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~   80 (258)
                      |++++|.++ .+|...+.++++|++|++.+|.+++..+..|.++++|++|++++|.+...+.. +..+++|++|++++|.
T Consensus        30 L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~  108 (680)
T 1ziw_A           30 LNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS  108 (680)
T ss_dssp             EECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred             EECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCc
Confidence            556667766 44444344577777777777777666666666777777777777766655553 6667777777777776


Q ss_pred             ccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccC--CCCCcccEEEeeC
Q 048125           81 LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGL--RNLVNLELLDLSG  158 (258)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~  158 (258)
                      +.....       ..+..+++|++|++++|.+.+..+..+..+ ++|++|++++|.+....+..+  ...++|++|++++
T Consensus       109 l~~~~~-------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~  180 (680)
T 1ziw_A          109 IQKIKN-------NPFVKQKNLITLDLSHNGLSSTKLGTQVQL-ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS  180 (680)
T ss_dssp             CCCCCS-------CTTTTCTTCCEEECCSSCCSCCCCCSSSCC-TTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred             cCccCh-------hHccccCCCCEEECCCCcccccCchhhccc-ccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence            654321       234455555666665555543333333322 345555555554432222221  1223444444444


Q ss_pred             Cccc---------------------------------------------------cccCCcccCccC--CcEEEecCCcc
Q 048125          159 NQFT---------------------------------------------------SRIPGSIGDLQK--LQMLGLNGNKF  185 (258)
Q Consensus       159 ~~~~---------------------------------------------------~~~~~~~~~~~~--L~~L~l~~~~~  185 (258)
                      |.+.                                                   +..+..|..++.  |+.|++++|.+
T Consensus       181 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l  260 (680)
T 1ziw_A          181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL  260 (680)
T ss_dssp             CCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred             CcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence            4443                                                   333333433322  55555555555


Q ss_pred             ccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCcccc-----ccc----cccccccCcceeEecCCC
Q 048125          186 LGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSG-----TIP----SEVIGLSSLSIYLDLSQN  256 (258)
Q Consensus       186 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~-----~~~----~~~~~~~~l~~~L~l~~n  256 (258)
                      .+..+..++.+++|++|++++|.+.+..+..+..+++|+.+++++|...+     .+|    ..+..++++ ++|++++|
T Consensus       261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L-~~L~l~~n  339 (680)
T 1ziw_A          261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCL-EHLNMEDN  339 (680)
T ss_dssp             CEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTC-CEEECCSC
T ss_pred             CccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCC-CEEECCCC
Confidence            44444445555555555555555554444445555555555555443221     111    144455566 66666665


Q ss_pred             C
Q 048125          257 Q  257 (258)
Q Consensus       257 ~  257 (258)
                      .
T Consensus       340 ~  340 (680)
T 1ziw_A          340 D  340 (680)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.95  E-value=2.9e-27  Score=201.77  Aligned_cols=123  Identities=24%  Similarity=0.249  Sum_probs=102.1

Q ss_pred             CCCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCC-CccccCCcceEEeccc
Q 048125            1 DFDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVP-SLENLHKLQRVIISQN   79 (258)
Q Consensus         1 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~   79 (258)
                      +|++++|.++ .+|..++   ++|++|++++|.+++..+..|.++++|++|++++|.+....+ .+..+++|++|++++|
T Consensus         4 ~l~ls~n~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            4 LVDRSKNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             EEECTTSCCS-SCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             eEecCCCCcc-ccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            3688999999 8998765   799999999999998888899999999999999999987755 4899999999999999


Q ss_pred             cccCcCCCccchhhhccccCCCCcEEEeecccccc-cccccccccccccceEEecccccC
Q 048125           80 HLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGG-MLPEAVGNFSTRLGILSVAENQLF  138 (258)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~l~~L~l~~~~~~  138 (258)
                      .++.+        +..  .+++|++|++++|.+.+ .+|..+..+ ++|++|++++|.+.
T Consensus        80 ~l~~l--------p~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l-~~L~~L~L~~n~l~  128 (520)
T 2z7x_B           80 KLVKI--------SCH--PTVNLKHLDLSFNAFDALPICKEFGNM-SQLKFLGLSTTHLE  128 (520)
T ss_dssp             CCCEE--------ECC--CCCCCSEEECCSSCCSSCCCCGGGGGC-TTCCEEEEEESSCC
T ss_pred             ceeec--------Ccc--ccCCccEEeccCCccccccchhhhccC-CcceEEEecCcccc
Confidence            98743        222  78999999999999875 356666655 47878877776553

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.95  E-value=6.5e-27  Score=209.95  Aligned_cols=251  Identities=20%  Similarity=0.183  Sum_probs=196.4

Q ss_pred             CCCCCcCcccCCCCcchhccCCCCceEEecCCccccccccc--ccCCCCCcEEEeecccCCCCCC--CccccCCcceEEe
Q 048125            1 DFDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVS--ISNASNLRELMIGKNGFSGKVP--SLENLHKLQRVII   76 (258)
Q Consensus         1 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l   76 (258)
                      +|++++|.+++..|..+. ++++|++|++.+|.+++..+..  +.++++|++|++++|.+.....  .+..+++|++|++
T Consensus        77 ~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~L  155 (844)
T 3j0a_A           77 ILDLGSSKIYFLHPDAFQ-GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF  155 (844)
T ss_dssp             EEECTTCCCCEECTTSSC-SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEE
T ss_pred             EEECCCCcCcccCHhHcc-CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEEC
Confidence            367889999966677666 6999999999999988755554  8899999999999999977654  3889999999999


Q ss_pred             ccccccCcCCCccch-------------------hhhccccCC------CCcEEEeeccccccccccccccc--------
Q 048125           77 SQNHLGNYGEKDNLE-------------------FVNSLVNAS------RLELLQISDNNFGGMLPEAVGNF--------  123 (258)
Q Consensus        77 ~~~~~~~~~~~~~~~-------------------~~~~~~~~~------~L~~L~l~~~~~~~~~~~~~~~~--------  123 (258)
                      ++|.+..........                   .+..+..++      +|+.|++++|.+.+..+..+...        
T Consensus       156 s~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~  235 (844)
T 3j0a_A          156 SSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS  235 (844)
T ss_dssp             ESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSE
T ss_pred             CCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccc
Confidence            999886643321100                   011122222      38889998886654333222111        


Q ss_pred             -----------------------------ccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccC
Q 048125          124 -----------------------------STRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQK  174 (258)
Q Consensus       124 -----------------------------~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  174 (258)
                                                   .++++.|++++|.+....+..+..+++|++|++++|.+....+..|..+++
T Consensus       236 L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~  315 (844)
T 3j0a_A          236 LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN  315 (844)
T ss_dssp             EECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSS
T ss_pred             eecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCC
Confidence                                         147899999999888667888999999999999999999888889999999


Q ss_pred             CcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccccccccCcceeEecC
Q 048125          175 LQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLS  254 (258)
Q Consensus       175 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~  254 (258)
                      |++|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+++ ++.    ++++ .+|+++
T Consensus       316 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~----~~~L-~~L~l~  389 (844)
T 3j0a_A          316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IHF----IPSI-PDIFLS  389 (844)
T ss_dssp             CCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CSS----CCSC-SEEEEE
T ss_pred             CCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-ccC----CCCc-chhccC
Confidence            9999999999987778899999999999999999987777788999999999999999983 332    5566 666666


Q ss_pred             CCCC
Q 048125          255 QNQL  258 (258)
Q Consensus       255 ~n~~  258 (258)
                      +|.+
T Consensus       390 ~N~l  393 (844)
T 3j0a_A          390 GNKL  393 (844)
T ss_dssp             SCCC
T ss_pred             CCCc
Confidence            6653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.95  E-value=1.4e-26  Score=203.55  Aligned_cols=203  Identities=21%  Similarity=0.195  Sum_probs=107.9

Q ss_pred             CcEEEeecccCCCCCCC-ccccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeecccccc------------
Q 048125           48 LRELMIGKNGFSGKVPS-LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGG------------  114 (258)
Q Consensus        48 L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------------  114 (258)
                      |+.|++++|.+....+. +..+++|+.|++++|.+.....      ...+..+++|++|++++|.+.+            
T Consensus       383 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L  456 (680)
T 1ziw_A          383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT------GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSL  456 (680)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECC------SGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTC
T ss_pred             CceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccC------cccccCcccccEEecCCCCcceeChhhhhcCccc
Confidence            33444444444333222 5556666777776666543100      1234444555555555554432            


Q ss_pred             --------------cccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccC--------CcccCc
Q 048125          115 --------------MLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIP--------GSIGDL  172 (258)
Q Consensus       115 --------------~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------~~~~~~  172 (258)
                                    ..|..+..+ ++++.|++++|.+....+..+..+++|++|++++|.+....+        ..+..+
T Consensus       457 ~~L~l~~n~l~~~~~~p~~~~~l-~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l  535 (680)
T 1ziw_A          457 QRLMLRRVALKNVDSSPSPFQPL-RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGL  535 (680)
T ss_dssp             CEEECTTSCCBCTTCSSCTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTC
T ss_pred             ccchhccccccccccCCcccccC-CCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCC
Confidence                          233333333 356666666665554444445556666666666665553211        124555


Q ss_pred             cCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccccc-cccCcceeE
Q 048125          173 QKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVI-GLSSLSIYL  251 (258)
Q Consensus       173 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~~l~~~L  251 (258)
                      ++|++|++++|.+.+..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+. .++++ ++|
T Consensus       536 ~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L-~~l  614 (680)
T 1ziw_A          536 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNL-TEL  614 (680)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTC-SEE
T ss_pred             CCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhccccccc-CEE
Confidence            6666666666666533333566666666666666666644444455666666666666666644444444 45666 666


Q ss_pred             ecCCCCC
Q 048125          252 DLSQNQL  258 (258)
Q Consensus       252 ~l~~n~~  258 (258)
                      ++++|++
T Consensus       615 ~l~~N~~  621 (680)
T 1ziw_A          615 DMRFNPF  621 (680)
T ss_dssp             ECTTCCC
T ss_pred             EccCCCc
Confidence            6666654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.95  E-value=1.8e-26  Score=187.25  Aligned_cols=240  Identities=25%  Similarity=0.376  Sum_probs=159.5

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccc
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHL   81 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~   81 (258)
                      |++++|.++ .+|. + .++++|++|++.+|.+.+..+  +..+++|++|++++|........+..+++|++|++++|.+
T Consensus        93 L~L~~n~i~-~~~~-~-~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~  167 (347)
T 4fmz_A           93 LYIGTNKIT-DISA-L-QNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKV  167 (347)
T ss_dssp             EECCSSCCC-CCGG-G-TTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCC
T ss_pred             EEccCCccc-CchH-H-cCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCc
Confidence            567788887 4553 3 358888888888888775432  6777888888888876554444466677777777777665


Q ss_pred             cCcCCCcc-------------chhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCC
Q 048125           82 GNYGEKDN-------------LEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNL  148 (258)
Q Consensus        82 ~~~~~~~~-------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~  148 (258)
                      ........             +.....+..+++|+.+++++|.+.+..+  +..+ ++++.|++++|.+....+  +..+
T Consensus       168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~-~~L~~L~l~~n~l~~~~~--~~~l  242 (347)
T 4fmz_A          168 KDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANM-TRLNSLKIGNNKITDLSP--LANL  242 (347)
T ss_dssp             CCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGC-TTCCEEECCSSCCCCCGG--GTTC
T ss_pred             CCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch--hhcC-CcCCEEEccCCccCCCcc--hhcC
Confidence            54321000             0000113444555555555554442211  2222 467777777777653322  6677


Q ss_pred             CcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEec
Q 048125          149 VNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDL  228 (258)
Q Consensus       149 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  228 (258)
                      ++|++|++++|.+...  ..+..+++|++|++++|.+.+.  ..+..+++|+.|++++|.+.+..+..++.+++|+.|++
T Consensus       243 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  318 (347)
T 4fmz_A          243 SQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL  318 (347)
T ss_dssp             TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEEC
T ss_pred             CCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEc
Confidence            7888888888877643  3567788888888888887743  45777888888888888887777777888888888888


Q ss_pred             cCCccccccccccccccCcceeEecCCCCC
Q 048125          229 YNNNLSGTIPSEVIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       229 ~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~  258 (258)
                      ++|++++..|  +..++.+ ++|++++|+|
T Consensus       319 ~~n~l~~~~~--~~~l~~L-~~L~l~~N~i  345 (347)
T 4fmz_A          319 SQNHITDIRP--LASLSKM-DSADFANQVI  345 (347)
T ss_dssp             CSSSCCCCGG--GGGCTTC-SEESSSCC--
T ss_pred             cCCccccccC--hhhhhcc-ceeehhhhcc
Confidence            8888885444  7778888 8888888875

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.95  E-value=1.7e-26  Score=198.70  Aligned_cols=122  Identities=25%  Similarity=0.318  Sum_probs=101.4

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEecccc
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNH   80 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~   80 (258)
                      +++++++++ .+|..+.   ++|++|++++|.+++..+..|.++++|++|++++|.+....+. +..+++|++|++++|.
T Consensus        36 l~ls~~~L~-~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  111 (562)
T 3a79_B           36 VDYSNRNLT-HVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR  111 (562)
T ss_dssp             EECTTSCCC-SCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             EEcCCCCCc-cCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc
Confidence            678899999 7998654   7999999999999988888999999999999999999877554 8999999999999999


Q ss_pred             ccCcCCCccchhhhccccCCCCcEEEeeccccccc-ccccccccccccceEEecccccC
Q 048125           81 LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGM-LPEAVGNFSTRLGILSVAENQLF  138 (258)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~~~~~  138 (258)
                      ++.+        +..  .+++|++|++++|.+.+. .|..+..+ ++|+.|++++|.+.
T Consensus       112 l~~l--------p~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l-~~L~~L~L~~n~l~  159 (562)
T 3a79_B          112 LQNI--------SCC--PMASLRHLDLSFNDFDVLPVCKEFGNL-TKLTFLGLSAAKFR  159 (562)
T ss_dssp             CCEE--------CSC--CCTTCSEEECCSSCCSBCCCCGGGGGC-TTCCEEEEECSBCC
T ss_pred             CCcc--------Ccc--ccccCCEEECCCCCccccCchHhhccc-CcccEEecCCCccc
Confidence            8743        222  789999999999998742 34556655 57888888887654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.95  E-value=1.8e-26  Score=198.91  Aligned_cols=239  Identities=21%  Similarity=0.206  Sum_probs=178.9

Q ss_pred             ccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC--------------------cccc
Q 048125            9 LQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS--------------------LENL   68 (258)
Q Consensus         9 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------------~~~l   68 (258)
                      +.+.+|..+. ++++|++|++.++.+. .+|..+..+ +|++|++++|.+...+..                    ...+
T Consensus       270 ~~~~~~~~~~-~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~  346 (570)
T 2z63_A          270 YLDDIIDLFN-CLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL  346 (570)
T ss_dssp             EESCSTTTTG-GGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBC
T ss_pred             hhhhchhhhc-CcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccC
Confidence            3334444433 3666666666666555 344444444 555555555554422211                    1455


Q ss_pred             CCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccC-ccCCC
Q 048125           69 HKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIP-SGLRN  147 (258)
Q Consensus        69 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~~~~  147 (258)
                      ++|++|++++|.++...     ..+..+..+++|++|++++|.+. ..+..+..+ ++++.|++++|.+....+ ..+..
T Consensus       347 ~~L~~L~l~~n~l~~~~-----~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~  419 (570)
T 2z63_A          347 PSLEFLDLSRNGLSFKG-----CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGL-EQLEHLDFQHSNLKQMSEFSVFLS  419 (570)
T ss_dssp             TTCCEEECCSSCCBEEE-----EEEHHHHTCSCCCEEECCSCSEE-EEEEEEETC-TTCCEEECTTSEEESCTTSCTTTT
T ss_pred             CCCCEEeCcCCccCccc-----cccccccccCccCEEECCCCccc-ccccccccc-CCCCEEEccCCccccccchhhhhc
Confidence            66666666666655321     11345667889999999998887 344445544 589999999998875544 46788


Q ss_pred             CCcccEEEeeCCccccccCCcccCccCCcEEEecCCccc-cccCCCCCCCCCcceEecccccccccCCcccccCcCCcEE
Q 048125          148 LVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFL-GEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVL  226 (258)
Q Consensus       148 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  226 (258)
                      +++|++|++++|.+....+..+..+++|++|++++|.+. +.+|..+..+++|+.|++++|.+.+..|..+..+++|+.|
T Consensus       420 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  499 (570)
T 2z63_A          420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL  499 (570)
T ss_dssp             CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence            999999999999998788889999999999999999987 4788999999999999999999998889999999999999


Q ss_pred             eccCCccccccccccccccCcceeEecCCCCC
Q 048125          227 DLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       227 ~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~  258 (258)
                      ++++|++++..+..+..++++ ++|++++|++
T Consensus       500 ~l~~n~l~~~~~~~~~~l~~L-~~L~l~~N~~  530 (570)
T 2z63_A          500 NMASNQLKSVPDGIFDRLTSL-QKIWLHTNPW  530 (570)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTC-CEEECCSSCB
T ss_pred             eCCCCcCCCCCHHHhhcccCC-cEEEecCCcc
Confidence            999999997777788999999 9999999985

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.94  E-value=3.8e-26  Score=185.29  Aligned_cols=240  Identities=26%  Similarity=0.336  Sum_probs=171.1

Q ss_pred             CCCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEecccc
Q 048125            1 DFDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNH   80 (258)
Q Consensus         1 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~   80 (258)
                      +|++++|.++ .++.  +.++++|++|++.+|.+++.  ..+.++++|++|++++|.+..... +..+++|++|++++|.
T Consensus        70 ~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~  143 (347)
T 4fmz_A           70 YLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANH  143 (347)
T ss_dssp             EEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCT
T ss_pred             EEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCC
Confidence            3678899998 5665  44699999999999998853  368899999999999999987554 8899999999999995


Q ss_pred             ccCc-CCCc-------------cchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCC
Q 048125           81 LGNY-GEKD-------------NLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLR  146 (258)
Q Consensus        81 ~~~~-~~~~-------------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~  146 (258)
                      .... ....             .......+..+++|+.|++++|.+. .++. +..+ ++++.+++++|.+....+  +.
T Consensus       144 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~-~~~l-~~L~~L~l~~n~l~~~~~--~~  218 (347)
T 4fmz_A          144 NLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIE-DISP-LASL-TSLHYFTAYVNQITDITP--VA  218 (347)
T ss_dssp             TCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCC-CCGG-GGGC-TTCCEEECCSSCCCCCGG--GG
T ss_pred             CcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccc-cccc-ccCC-CccceeecccCCCCCCch--hh
Confidence            4321 1000             0000111334444555555544443 2221 2222 355555555555442222  55


Q ss_pred             CCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEE
Q 048125          147 NLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVL  226 (258)
Q Consensus       147 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  226 (258)
                      .+++|++|++++|.+....+  +..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+.  ..+..+++|+.|
T Consensus       219 ~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L  292 (347)
T 4fmz_A          219 NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSL  292 (347)
T ss_dssp             GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred             cCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEE
Confidence            67788888888888874433  77888899999988888743  4678889999999999988743  457788999999


Q ss_pred             eccCCccccccccccccccCcceeEecCCCCC
Q 048125          227 DLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       227 ~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~  258 (258)
                      ++++|++++..+..+..++++ ++|++++|++
T Consensus       293 ~L~~n~l~~~~~~~l~~l~~L-~~L~L~~n~l  323 (347)
T 4fmz_A          293 FLNNNQLGNEDMEVIGGLTNL-TTLFLSQNHI  323 (347)
T ss_dssp             ECCSSCCCGGGHHHHHTCTTC-SEEECCSSSC
T ss_pred             ECcCCcCCCcChhHhhccccC-CEEEccCCcc
Confidence            999999987778888899999 9999999875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.94  E-value=2.2e-26  Score=204.82  Aligned_cols=245  Identities=18%  Similarity=0.271  Sum_probs=171.5

Q ss_pred             CCCCcCcccCCCCc--chhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCC-cceEEecc
Q 048125            2 FDFPFNQLQGSLPS--DLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHK-LQRVIISQ   78 (258)
Q Consensus         2 l~~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~-L~~L~l~~   78 (258)
                      |++++|.++ .+|.  .+. ++++|++|++.+|.++ .+| .+..+++|++|++++|.+...+..+..+++ |++|++++
T Consensus       553 L~Ls~N~L~-~ip~~~~l~-~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~  628 (876)
T 4ecn_A          553 FYMGYNNLE-EFPASASLQ-KMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSH  628 (876)
T ss_dssp             EECCSSCCC-BCCCHHHHT-TCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCS
T ss_pred             EEeeCCcCC-ccCChhhhh-cCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcC
Confidence            567788888 7887  555 5888888888888877 566 777788888888888888755555777777 88888888


Q ss_pred             ccccCcCCCccc--------------hhh---h----cc--ccCCCCcEEEeecccccccccccccccccccceEEeccc
Q 048125           79 NHLGNYGEKDNL--------------EFV---N----SL--VNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAEN  135 (258)
Q Consensus        79 ~~~~~~~~~~~~--------------~~~---~----~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~  135 (258)
                      |.++.++..-..              .+.   +    .+  ..+++|+.|++++|.+. .+|..++..+++|+.|++++|
T Consensus       629 N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N  707 (876)
T 4ecn_A          629 NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNN  707 (876)
T ss_dssp             SCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSC
T ss_pred             CCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCC
Confidence            877644321000              000   0    00  02236677777777666 556555534457888888887


Q ss_pred             ccCCccCccCCC--------CCcccEEEeeCCccccccCCccc--CccCCcEEEecCCccccccCCCCCCCCCcceEecc
Q 048125          136 QLFGNIPSGLRN--------LVNLELLDLSGNQFTSRIPGSIG--DLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFA  205 (258)
Q Consensus       136 ~~~~~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  205 (258)
                      .+. .+|..+..        +++|++|++++|.+. ..|..+.  .+++|+.|++++|.+.+ +|..+..+++|+.|+++
T Consensus       708 ~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls  784 (876)
T 4ecn_A          708 LMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIR  784 (876)
T ss_dssp             CCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECC
T ss_pred             cCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECC
Confidence            776 44443322        227888888888887 5566665  78888888888888875 67777788888888886


Q ss_pred             c------ccccccCCcccccCcCCcEEeccCCccccccccccccccCcceeEecCCCCC
Q 048125          206 E------NMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       206 ~------n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~  258 (258)
                      +      |.+.+.+|..+..+++|+.|++++|++ +.+|..+.  ++| ++|||++|++
T Consensus       785 ~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L-~~LdLs~N~l  839 (876)
T 4ecn_A          785 HQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQL-YILDIADNPN  839 (876)
T ss_dssp             CCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSS-CEEECCSCTT
T ss_pred             CCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCC-CEEECCCCCC
Confidence            5      666677888888888888888888888 47777655  577 8888888875

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.94  E-value=8.4e-27  Score=200.11  Aligned_cols=81  Identities=21%  Similarity=0.214  Sum_probs=57.3

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEecccc
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNH   80 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~   80 (258)
                      |++++|.+++..|..+. ++++|++|++.+|.+++..+..|.++++|++|++++|.+....+. +..+++|++|++++|.
T Consensus        31 L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~  109 (549)
T 2z81_A           31 LDLSFNKITYIGHGDLR-ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP  109 (549)
T ss_dssp             EECCSSCCCEECSSTTS-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCC
T ss_pred             EECcCCccCccChhhhh-cCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCc
Confidence            56777777744444444 577788888877777766666777777777777777777766555 6777777777777777


Q ss_pred             ccC
Q 048125           81 LGN   83 (258)
Q Consensus        81 ~~~   83 (258)
                      ++.
T Consensus       110 l~~  112 (549)
T 2z81_A          110 YQT  112 (549)
T ss_dssp             CSS
T ss_pred             ccc
Confidence            664

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=1.7e-27  Score=190.51  Aligned_cols=236  Identities=22%  Similarity=0.224  Sum_probs=183.6

Q ss_pred             CCCcCcccCCCCcchhccCCCCceEEecCCccc-cccccccc-------CCCCCcEEEeecccCCCCCCC-c--cccCCc
Q 048125            3 DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFT-GPIPVSIS-------NASNLRELMIGKNGFSGKVPS-L--ENLHKL   71 (258)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~-~--~~l~~L   71 (258)
                      ++.+|.+  .+|..+...   |++|++.++.+. ...+..+.       ++++|++|++++|.+.+..+. +  ..+++|
T Consensus        49 ~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L  123 (312)
T 1wwl_A           49 LKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDL  123 (312)
T ss_dssp             HHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCC
T ss_pred             eeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCc
Confidence            3455666  567766643   888888888774 33444443       689999999999999864444 4  889999


Q ss_pred             ceEEeccccccCcCCCccchhhhccccC-----CCCcEEEeecccccccccccccccccccceEEecccccCCc--cCcc
Q 048125           72 QRVIISQNHLGNYGEKDNLEFVNSLVNA-----SRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGN--IPSG  144 (258)
Q Consensus        72 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~--~~~~  144 (258)
                      ++|++++|.++..+        ..+..+     ++|++|++++|.+.+..+..+..+ ++++.|++++|.+...  .+..
T Consensus       124 ~~L~Ls~N~l~~~~--------~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~  194 (312)
T 1wwl_A          124 NILNLRNVSWATRD--------AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF-PALSTLDLSDNPELGERGLISA  194 (312)
T ss_dssp             SEEEEESCBCSSSS--------SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC-SSCCEEECCSCTTCHHHHHHHH
T ss_pred             cEEEccCCCCcchh--------HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC-CCCCEEECCCCCcCcchHHHHH
Confidence            99999999998642        223333     899999999999986655666665 5899999999986432  2223


Q ss_pred             --CCCCCcccEEEeeCCcccc---ccCCcccCccCCcEEEecCCccccccC-CCCCCCCCcceEecccccccccCCcccc
Q 048125          145 --LRNLVNLELLDLSGNQFTS---RIPGSIGDLQKLQMLGLNGNKFLGEIP-SSIGNLTLLMTLNFAENMLEGSIPSSLG  218 (258)
Q Consensus       145 --~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~  218 (258)
                        +..+++|++|++++|.+..   .....+..+++|++|++++|.+.+..| ..+..+++|++|++++|.++ .+|..+.
T Consensus       195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~  273 (312)
T 1wwl_A          195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP  273 (312)
T ss_dssp             SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC
T ss_pred             HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc
Confidence              3778999999999999873   223445677899999999999987664 46677899999999999998 6777666


Q ss_pred             cCcCCcEEeccCCccccccccccccccCcceeEecCCCCC
Q 048125          219 KCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       219 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~  258 (258)
                        ++|+.|++++|++++ +|. +..++.+ ++|++++|++
T Consensus       274 --~~L~~L~Ls~N~l~~-~p~-~~~l~~L-~~L~L~~N~l  308 (312)
T 1wwl_A          274 --AKLSVLDLSYNRLDR-NPS-PDELPQV-GNLSLKGNPF  308 (312)
T ss_dssp             --SEEEEEECCSSCCCS-CCC-TTTSCEE-EEEECTTCTT
T ss_pred             --CCceEEECCCCCCCC-Chh-HhhCCCC-CEEeccCCCC
Confidence              899999999999995 466 8899999 9999999986

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=4.3e-27  Score=191.31  Aligned_cols=229  Identities=20%  Similarity=0.233  Sum_probs=185.9

Q ss_pred             CCCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEeccc
Q 048125            1 DFDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQN   79 (258)
Q Consensus         1 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~   79 (258)
                      +|++++|.++ .+|...+.++++|++|++.+|.+++..+..|.++++|++|++++|.+...... +..+++|++|++++|
T Consensus        56 ~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  134 (353)
T 2z80_A           56 SLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN  134 (353)
T ss_dssp             EEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC
T ss_pred             EEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC
Confidence            3678899999 56665555799999999999999988888899999999999999999877666 788999999999999


Q ss_pred             cccCcCCCccchhhhccccCCCCcEEEeeccc-ccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeC
Q 048125           80 HLGNYGEKDNLEFVNSLVNASRLELLQISDNN-FGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSG  158 (258)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  158 (258)
                      .++..+.      ...+..+++|++|++++|. +....+..+..+ ++++.|++++|.+....+..+..+++|++|++++
T Consensus       135 ~l~~l~~------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  207 (353)
T 2z80_A          135 PYKTLGE------TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL-TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM  207 (353)
T ss_dssp             CCSSSCS------SCSCTTCTTCCEEEEEESSSCCEECTTTTTTC-CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred             CCcccCc------hhhhccCCCCcEEECCCCccccccCHHHccCC-CCCCEEECCCCCcCccCHHHHhccccCCeecCCC
Confidence            9885432      1257789999999999995 553334445544 6899999999998877788899999999999999


Q ss_pred             CccccccCCcccCccCCcEEEecCCcccccc-------------------------------CCCCCCCCCcceEecccc
Q 048125          159 NQFTSRIPGSIGDLQKLQMLGLNGNKFLGEI-------------------------------PSSIGNLTLLMTLNFAEN  207 (258)
Q Consensus       159 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-------------------------------~~~~~~~~~L~~L~l~~n  207 (258)
                      |.+.......+..+++|++|++++|.+.+..                               |..+..+++|++|++++|
T Consensus       208 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N  287 (353)
T 2z80_A          208 KQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN  287 (353)
T ss_dssp             SCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS
T ss_pred             CccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC
Confidence            9987544444556889999999999887532                               334567889999999999


Q ss_pred             cccccCCcc-cccCcCCcEEeccCCccccccc
Q 048125          208 MLEGSIPSS-LGKCQNLIVLDLYNNNLSGTIP  238 (258)
Q Consensus       208 ~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~  238 (258)
                      .+. .+|.. +..+++|+.|++++|.+.+..+
T Consensus       288 ~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          288 QLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            999 45554 5889999999999999985443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=1.9e-26  Score=194.86  Aligned_cols=216  Identities=19%  Similarity=0.177  Sum_probs=183.0

Q ss_pred             CCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCC
Q 048125           21 LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNAS  100 (258)
Q Consensus        21 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  100 (258)
                      +++|++|++++|.+++..|..|..+++|++|++++|.+....+ +..+++|++|++++|.++..            ...+
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l------------~~~~   99 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL------------LVGP   99 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEE------------EECT
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCC------------CCCC
Confidence            4489999999999998888899999999999999999876554 88999999999999988742            2348


Q ss_pred             CCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCccc-CccCCcEEE
Q 048125          101 RLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIG-DLQKLQMLG  179 (258)
Q Consensus       101 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~  179 (258)
                      +|++|++++|.+.+..+..    .++++.|++++|.+....+..+..+++|++|++++|.+.+..+..+. .+++|++|+
T Consensus       100 ~L~~L~L~~N~l~~~~~~~----l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~  175 (487)
T 3oja_A          100 SIETLHAANNNISRVSCSR----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN  175 (487)
T ss_dssp             TCCEEECCSSCCCCEEECC----CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred             CcCEEECcCCcCCCCCccc----cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence            8999999999988443322    25899999999998877777888899999999999999877777775 789999999


Q ss_pred             ecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccccccccCcceeEecCCCCC
Q 048125          180 LNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       180 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~  258 (258)
                      +++|.+.+..+  ...+++|+.|++++|.+++ +|..+..+++|+.|++++|.++ .+|..+..++.+ .+|++++|++
T Consensus       176 Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L-~~L~l~~N~l  249 (487)
T 3oja_A          176 LQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNL-EHFDLRGNGF  249 (487)
T ss_dssp             CTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTC-CEEECTTCCB
T ss_pred             cCCCccccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCC-CEEEcCCCCC
Confidence            99999986532  3458999999999999985 4445888999999999999999 588888899999 9999999975

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.94  E-value=3e-25  Score=193.31  Aligned_cols=111  Identities=27%  Similarity=0.390  Sum_probs=90.3

Q ss_pred             CCCcccEEEeeCCcc-ccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcE
Q 048125          147 NLVNLELLDLSGNQF-TSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIV  225 (258)
Q Consensus       147 ~~~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  225 (258)
                      .++.+++|++++|.+ ....|..|..+++|++|++++|++++..|..|..+++|++|++++|.+.+..+..+..+++|+.
T Consensus       467 ~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  546 (635)
T 4g8a_A          467 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV  546 (635)
T ss_dssp             TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCE
T ss_pred             cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCE
Confidence            345566667766653 3346777888889999999999988777888899999999999999998777778888899999


Q ss_pred             EeccCCcccccccccccccc-CcceeEecCCCCC
Q 048125          226 LDLYNNNLSGTIPSEVIGLS-SLSIYLDLSQNQL  258 (258)
Q Consensus       226 L~l~~~~l~~~~~~~~~~~~-~l~~~L~l~~n~~  258 (258)
                      |++++|+|++..|..+..++ +| ++|+|++||+
T Consensus       547 L~Ls~N~l~~~~~~~l~~l~~~L-~~L~L~~Np~  579 (635)
T 4g8a_A          547 LDYSLNHIMTSKKQELQHFPSSL-AFLNLTQNDF  579 (635)
T ss_dssp             EECTTSCCCBCCSSCTTCCCTTC-CEEECTTCCB
T ss_pred             EECCCCcCCCCCHHHHHhhhCcC-CEEEeeCCCC
Confidence            99999999977788888874 67 9999999885

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.93  E-value=4.2e-25  Score=192.36  Aligned_cols=92  Identities=28%  Similarity=0.373  Sum_probs=77.1

Q ss_pred             CCcccCccCCcEEEecCCccc-cccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccccccc
Q 048125          166 PGSIGDLQKLQMLGLNGNKFL-GEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGL  244 (258)
Q Consensus       166 ~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~  244 (258)
                      +..+..++.++.|++++|... ...|..|..+++|+.|++++|.+.+..|..+.++++|+.|++++|+|++..+..|..+
T Consensus       462 ~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l  541 (635)
T 4g8a_A          462 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL  541 (635)
T ss_dssp             TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTC
T ss_pred             ccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCC
Confidence            344555667777888777643 3567888999999999999999998888899999999999999999997777788999


Q ss_pred             cCcceeEecCCCCC
Q 048125          245 SSLSIYLDLSQNQL  258 (258)
Q Consensus       245 ~~l~~~L~l~~n~~  258 (258)
                      ++| ++|||++|++
T Consensus       542 ~~L-~~L~Ls~N~l  554 (635)
T 4g8a_A          542 NSL-QVLDYSLNHI  554 (635)
T ss_dssp             TTC-CEEECTTSCC
T ss_pred             CCC-CEEECCCCcC
Confidence            999 9999999975

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=5.1e-27  Score=188.10  Aligned_cols=231  Identities=20%  Similarity=0.184  Sum_probs=187.8

Q ss_pred             CCCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEecccc
Q 048125            1 DFDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNH   80 (258)
Q Consensus         1 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~   80 (258)
                      +|++++|.+++..|..+ .++++|++|++.+|.+++..+  +..+++|++|++++|.+....    ..++|++|++++|.
T Consensus        38 ~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l~~n~  110 (317)
T 3o53_A           38 ELDLSGNPLSQISAADL-APFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNN  110 (317)
T ss_dssp             EEECTTSCCCCCCHHHH-TTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE----ECTTCCEEECCSSC
T ss_pred             EEECcCCccCcCCHHHh-hCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc----CCCCcCEEECCCCc
Confidence            36889999995444444 479999999999999986554  889999999999999886533    44899999999999


Q ss_pred             ccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccC-CCCCcccEEEeeCC
Q 048125           81 LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGL-RNLVNLELLDLSGN  159 (258)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~  159 (258)
                      ++...          ...+++|++|++++|.+.+..+..+..+ ++++.|++++|.+....+..+ ..+++|++|++++|
T Consensus       111 l~~~~----------~~~~~~L~~L~l~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N  179 (317)
T 3o53_A          111 ISRVS----------CSRGQGKKNIYLANNKITMLRDLDEGCR-SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN  179 (317)
T ss_dssp             CSEEE----------ECCCSSCEEEECCSSCCCSGGGBCTGGG-SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             cCCcC----------ccccCCCCEEECCCCCCCCccchhhhcc-CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence            87642          2246889999999999985545455544 589999999998876555555 46789999999999


Q ss_pred             ccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccc-cccc
Q 048125          160 QFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLS-GTIP  238 (258)
Q Consensus       160 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~  238 (258)
                      .+... +. ...+++|++|++++|.++ .+|..+..+++|+.|++++|.+. .+|..+..+++|+.+++++|.+. +.++
T Consensus       180 ~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~  255 (317)
T 3o53_A          180 FIYDV-KG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLR  255 (317)
T ss_dssp             CCCEE-EC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHH
T ss_pred             cCccc-cc-ccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHH
Confidence            99855 32 235889999999999998 45556889999999999999998 56778889999999999999998 6777


Q ss_pred             cccccccCcceeEecC
Q 048125          239 SEVIGLSSLSIYLDLS  254 (258)
Q Consensus       239 ~~~~~~~~l~~~L~l~  254 (258)
                      ..+..++.+ ++|+++
T Consensus       256 ~~~~~~~~L-~~l~l~  270 (317)
T 3o53_A          256 DFFSKNQRV-QTVAKQ  270 (317)
T ss_dssp             HHHHTCHHH-HHHHHH
T ss_pred             HHHhccccc-eEEECC
Confidence            788888888 777765

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.93  E-value=9e-25  Score=183.97  Aligned_cols=77  Identities=30%  Similarity=0.457  Sum_probs=47.5

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccc
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHL   81 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~   81 (258)
                      |++++|.++ .+|. + .++++|++|++.+|.+.+..+  +.++++|++|++++|.+..... +..+++|++|++++|.+
T Consensus        73 L~Ls~n~l~-~~~~-~-~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l  146 (466)
T 1o6v_A           73 INFSNNQLT-DITP-L-KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTI  146 (466)
T ss_dssp             EECCSSCCC-CCGG-G-TTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEE
T ss_pred             EECCCCccC-Cchh-h-hccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCcc
Confidence            456666666 3343 3 346666666666666664333  6666777777777776655433 66667777777777766


Q ss_pred             cCc
Q 048125           82 GNY   84 (258)
Q Consensus        82 ~~~   84 (258)
                      ...
T Consensus       147 ~~~  149 (466)
T 1o6v_A          147 SDI  149 (466)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=1.9e-24  Score=169.32  Aligned_cols=202  Identities=25%  Similarity=0.313  Sum_probs=158.1

Q ss_pred             CCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEeccccccCcCCCccchhhhccccCC
Q 048125           22 PNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNAS  100 (258)
Q Consensus        22 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  100 (258)
                      .+.+++++.++.++. +|..+.  +.+++|++++|.+...... +..+++|++|++++|.++....       ..+..++
T Consensus        16 ~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~-------~~~~~l~   85 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA-------GIFKELK   85 (270)
T ss_dssp             TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT-------TTTSSCT
T ss_pred             CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh-------hhhcCCC
Confidence            457889999888884 555443  6799999999998877664 8888999999999998875332       2456788


Q ss_pred             CCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEe
Q 048125          101 RLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGL  180 (258)
Q Consensus       101 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  180 (258)
                      +|++|++++|.+. .++...+...++|++|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|++
T Consensus        86 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  164 (270)
T 2o6q_A           86 NLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL  164 (270)
T ss_dssp             TCCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEe
Confidence            9999999999887 444433333358899999888887666667788888999999988888666667888888999999


Q ss_pred             cCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccc
Q 048125          181 NGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLS  234 (258)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~  234 (258)
                      ++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus       165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            888888666667888888999999988888666666778888899999888876

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.93  E-value=1.5e-25  Score=192.27  Aligned_cols=173  Identities=20%  Similarity=0.267  Sum_probs=130.8

Q ss_pred             CCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEeccccc
Q 048125            3 DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNHL   81 (258)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~   81 (258)
                      +.+++.++ ++|..++   ++|++|++++|.+++..+..|.++++|++|++++|.+....+. +..+++|++|++++|.+
T Consensus        11 ~~~~~~l~-~ip~~~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l   86 (549)
T 2z81_A           11 DGRSRSFT-SIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL   86 (549)
T ss_dssp             ECTTSCCS-SCCSCCC---TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             ECCCCccc-cccccCC---CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence            35567788 8898654   7899999999999988888999999999999999999877654 89999999999999998


Q ss_pred             cCcCCCccchhhhccccCCCCcEEEeeccccccc-ccccccccccccceEEecccccCCcc-CccCCCCCcccEEEeeCC
Q 048125           82 GNYGEKDNLEFVNSLVNASRLELLQISDNNFGGM-LPEAVGNFSTRLGILSVAENQLFGNI-PSGLRNLVNLELLDLSGN  159 (258)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~  159 (258)
                      +..       .+..+..+++|++|++++|.+.+. .+..+..+ +++++|++++|.....+ +..+..+++|++|++++|
T Consensus        87 ~~~-------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n  158 (549)
T 2z81_A           87 SSL-------SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL-TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL  158 (549)
T ss_dssp             CSC-------CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC-TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred             Ccc-------CHHHhccCCCCcEEECCCCcccccchhhhhhcc-CCccEEECCCCccccccCHhhhhcccccCeeeccCC
Confidence            863       233477888899999988887642 34444444 57888888887633233 356777888888888888


Q ss_pred             ccccccCCcccC------------------------ccCCcEEEecCCcccc
Q 048125          160 QFTSRIPGSIGD------------------------LQKLQMLGLNGNKFLG  187 (258)
Q Consensus       160 ~~~~~~~~~~~~------------------------~~~L~~L~l~~~~~~~  187 (258)
                      .+.+..+..+..                        +++|++|++++|.+.+
T Consensus       159 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~  210 (549)
T 2z81_A          159 SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR  210 (549)
T ss_dssp             TCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred             cccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccc
Confidence            777655555544                        4566666666666543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=4.7e-25  Score=173.32  Aligned_cols=221  Identities=21%  Similarity=0.215  Sum_probs=172.6

Q ss_pred             CCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEecccccc
Q 048125            4 FPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNHLG   82 (258)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~   82 (258)
                      ..+.+++ .+|..+.   ++|++|++.++.+++..+..|.++++|++|++++|.+...... +..+++|++|++++|.++
T Consensus        14 c~~~~l~-~ip~~l~---~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~   89 (276)
T 2z62_A           14 CMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ   89 (276)
T ss_dssp             CTTSCCS-SCCSSSC---TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             ecCCCcc-ccCCCCC---CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence            3445566 6777543   5799999999999877777888999999999999988776654 788899999999999887


Q ss_pred             CcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCc-cCccCCCCCcccEEEeeCCcc
Q 048125           83 NYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGN-IPSGLRNLVNLELLDLSGNQF  161 (258)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~  161 (258)
                      ...       +..+..+++|++|++++|.+.+..+..+..+ ++|++|++++|.+... +|..+..+++|++|++++|.+
T Consensus        90 ~~~-------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l  161 (276)
T 2z62_A           90 SLA-------LGAFSGLSSLQKLVAVETNLASLENFPIGHL-KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI  161 (276)
T ss_dssp             EEC-------TTTTTTCTTCCEEECTTSCCCCSTTCCCTTC-TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             ccC-------hhhhcCCccccEEECCCCCccccCchhcccC-CCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC
Confidence            532       2367788999999999998874444344444 5899999999888653 577888889999999999988


Q ss_pred             ccccCCcccCccCCc----EEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCcccccc
Q 048125          162 TSRIPGSIGDLQKLQ----MLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTI  237 (258)
Q Consensus       162 ~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~  237 (258)
                      .+..+..+..+++++    ++++++|.+.+..+..+. ..+|+.|++++|.+.+..+..+..+++|+.+++++|.+.+..
T Consensus       162 ~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             CEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred             CcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence            876677777777777    889999998855444444 447999999999988666666788899999999999888543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.93  E-value=3.7e-25  Score=190.69  Aligned_cols=231  Identities=21%  Similarity=0.203  Sum_probs=182.2

Q ss_pred             CceEEecCC-cccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccc------------
Q 048125           24 LEGLNLAGN-QFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNL------------   90 (258)
Q Consensus        24 L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~------------   90 (258)
                      ++.+++.++ .+.+..+..+..+++|++|++++|.+...+..+..+ +|++|++++|.+..++.....            
T Consensus       259 l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~  337 (570)
T 2z63_A          259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG  337 (570)
T ss_dssp             EEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBS
T ss_pred             hhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCcc
Confidence            566777766 667778888999999999999999998766667777 999999999988754331100            


Q ss_pred             hhhhccccCCCCcEEEeecccccccc--cccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccC-C
Q 048125           91 EFVNSLVNASRLELLQISDNNFGGML--PEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIP-G  167 (258)
Q Consensus        91 ~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~  167 (258)
                      ........+++|++|++++|.+.+..  +..+..+ ++++.|++++|.+.. .+..+..+++|++|++++|.+.+..+ .
T Consensus       338 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~  415 (570)
T 2z63_A          338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT-TSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFS  415 (570)
T ss_dssp             CCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTC-SCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESCTTSC
T ss_pred             ccccccccCCCCCEEeCcCCccCcccccccccccc-CccCEEECCCCcccc-ccccccccCCCCEEEccCCccccccchh
Confidence            00001145677888888887765332  3444444 578888888887763 33337788899999999998876544 5


Q ss_pred             cccCccCCcEEEecCCccccccCCCCCCCCCcceEeccccccc-ccCCcccccCcCCcEEeccCCccccccccccccccC
Q 048125          168 SIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLE-GSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSS  246 (258)
Q Consensus       168 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~  246 (258)
                      .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +.+|..+..+++|+.|++++|++++..|..+..+++
T Consensus       416 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  495 (570)
T 2z63_A          416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS  495 (570)
T ss_dssp             TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccC
Confidence            7788999999999999998888889999999999999999987 468888999999999999999999777889999999


Q ss_pred             cceeEecCCCCC
Q 048125          247 LSIYLDLSQNQL  258 (258)
Q Consensus       247 l~~~L~l~~n~~  258 (258)
                      | ++|++++|.+
T Consensus       496 L-~~L~l~~n~l  506 (570)
T 2z63_A          496 L-QVLNMASNQL  506 (570)
T ss_dssp             C-CEEECCSSCC
T ss_pred             C-CEEeCCCCcC
Confidence            9 9999999875

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.93  E-value=1.5e-24  Score=171.48  Aligned_cols=202  Identities=23%  Similarity=0.213  Sum_probs=142.0

Q ss_pred             hccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEeccccccCcCCCccchhhhcc
Q 048125           18 GFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNHLGNYGEKDNLEFVNSL   96 (258)
Q Consensus        18 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   96 (258)
                      ..++++++++++.++.++. +|..+.  +.++.|++++|.+...... +..+++|++|++++|.++...         ..
T Consensus         6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---------~~   73 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ---------VD   73 (290)
T ss_dssp             EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE---------CC
T ss_pred             ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCccc---------CC
Confidence            3357788888888888773 454443  6788888888888765543 777888888888888776432         12


Q ss_pred             ccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCc
Q 048125           97 VNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQ  176 (258)
Q Consensus        97 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  176 (258)
                      ..+++|++|++++|.+. .+|..+..+ ++++.|++++|.+....+..|..+++|++|++++|.+....+..|..+++|+
T Consensus        74 ~~l~~L~~L~Ls~N~l~-~l~~~~~~l-~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  151 (290)
T 1p9a_G           74 GTLPVLGTLDLSHNQLQ-SLPLLGQTL-PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE  151 (290)
T ss_dssp             SCCTTCCEEECCSSCCS-SCCCCTTTC-TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             CCCCcCCEEECCCCcCC-cCchhhccC-CCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCC
Confidence            56777888888888776 555544444 4677777777777654556677777777777777777766666667777777


Q ss_pred             EEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccc
Q 048125          177 MLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLS  234 (258)
Q Consensus       177 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~  234 (258)
                      .|++++|++++..+..|..+++|+.|++++|.+. .+|..+....+|+.+++++|.+.
T Consensus       152 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             EEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            7777777777544455677777777777777776 56666666677777777777665

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=4.6e-26  Score=192.49  Aligned_cols=231  Identities=20%  Similarity=0.172  Sum_probs=190.4

Q ss_pred             CCCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEecccc
Q 048125            1 DFDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNH   80 (258)
Q Consensus         1 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~   80 (258)
                      +|++++|.+++..|..+. ++++|++|++++|.+++..+  +..+++|++|++++|.+...+    ..++|++|++++|.
T Consensus        38 ~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~----~~~~L~~L~L~~N~  110 (487)
T 3oja_A           38 ELDLSGNPLSQISAADLA-PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNN  110 (487)
T ss_dssp             EEECCSSCCCCCCGGGGT-TCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE----ECTTCCEEECCSSC
T ss_pred             EEEeeCCcCCCCCHHHHh-CCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC----CCCCcCEEECcCCc
Confidence            378899999954445554 69999999999999986555  889999999999999887543    34899999999999


Q ss_pred             ccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCC-CCCcccEEEeeCC
Q 048125           81 LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLR-NLVNLELLDLSGN  159 (258)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~  159 (258)
                      ++...          ...+++|+.|++++|.+.+..+..+..+ ++|+.|++++|.+....+..+. .+++|++|++++|
T Consensus       111 l~~~~----------~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N  179 (487)
T 3oja_A          111 ISRVS----------CSRGQGKKNIYLANNKITMLRDLDEGCR-SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN  179 (487)
T ss_dssp             CCCEE----------ECCCSSCEEEECCSSCCCSGGGBCGGGG-SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             CCCCC----------ccccCCCCEEECCCCCCCCCCchhhcCC-CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence            98642          2246889999999999986666666655 5899999999998866676665 7899999999999


Q ss_pred             ccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccc-cccc
Q 048125          160 QFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLS-GTIP  238 (258)
Q Consensus       160 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~  238 (258)
                      .+.+..+  ...+++|++|++++|.+++ +|..+..+++|+.|++++|.+. .+|..+..+++|+.+++++|.+. +.+|
T Consensus       180 ~l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~  255 (487)
T 3oja_A          180 FIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLR  255 (487)
T ss_dssp             CCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred             ccccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchH
Confidence            9986533  3458999999999999995 5556889999999999999998 47777888999999999999998 5667


Q ss_pred             cccccccCcceeEecC
Q 048125          239 SEVIGLSSLSIYLDLS  254 (258)
Q Consensus       239 ~~~~~~~~l~~~L~l~  254 (258)
                      ..+..++.+ ..++++
T Consensus       256 ~~~~~l~~L-~~l~~~  270 (487)
T 3oja_A          256 DFFSKNQRV-QTVAKQ  270 (487)
T ss_dssp             HHHTTCHHH-HHHHHH
T ss_pred             HHHHhCCCC-cEEecc
Confidence            777777777 766664

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=8.9e-25  Score=171.75  Aligned_cols=220  Identities=20%  Similarity=0.187  Sum_probs=178.0

Q ss_pred             eEEecCCcccccccccccCCCCCcEEEeecccCCCCCC-CccccCCcceEEeccccccCcCCCccchhhhccccCCCCcE
Q 048125           26 GLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVP-SLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLEL  104 (258)
Q Consensus        26 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~  104 (258)
                      .++..+.++. .+|..+.  +.+++|++++|.+..... .+..+++|++|++++|.++...       ...+..+++|++
T Consensus        11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------~~~~~~l~~L~~   80 (276)
T 2z62_A           11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-------DGAYQSLSHLST   80 (276)
T ss_dssp             EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEEC-------TTTTTTCTTCCE
T ss_pred             eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccC-------HHHccCCcCCCE
Confidence            3455555555 3555443  579999999999987776 4889999999999999887532       235778999999


Q ss_pred             EEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccc-cCCcccCccCCcEEEecCC
Q 048125          105 LQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSR-IPGSIGDLQKLQMLGLNGN  183 (258)
Q Consensus       105 L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~  183 (258)
                      |++++|.+.+..+..+..+ +++++|++++|.+....+..+..+++|++|++++|.+... .|..+..+++|++|++++|
T Consensus        81 L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N  159 (276)
T 2z62_A           81 LILTGNPIQSLALGAFSGL-SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN  159 (276)
T ss_dssp             EECTTCCCCEECTTTTTTC-TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             EECCCCccCccChhhhcCC-ccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC
Confidence            9999999885555555555 6899999999988765566788999999999999999854 4888999999999999999


Q ss_pred             ccccccCCCCCCCCCcc----eEecccccccccCCcccccCcCCcEEeccCCccccccccccccccCcceeEecCCCCC
Q 048125          184 KFLGEIPSSIGNLTLLM----TLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       184 ~~~~~~~~~~~~~~~L~----~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~  258 (258)
                      .+.+..+..+..+++|+    ++++++|.+.+..+..+ ...+|+.|++++|++++..+..+..++++ ++|++++|++
T Consensus       160 ~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~l~~N~~  236 (276)
T 2z62_A          160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSL-QKIWLHTNPW  236 (276)
T ss_dssp             CCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSC-CEEECCSSCB
T ss_pred             CCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccc-cEEEccCCcc
Confidence            99876667777777777    89999999986555444 45589999999999995555567889999 9999999985

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=1.5e-25  Score=179.13  Aligned_cols=222  Identities=22%  Similarity=0.238  Sum_probs=178.3

Q ss_pred             CCCCcCccc-CCCCcchh------ccCCCCceEEecCCcccccccccc--cCCCCCcEEEeecccCCCCCCCcccc----
Q 048125            2 FDFPFNQLQ-GSLPSDLG------FTLPNLEGLNLAGNQFTGPIPVSI--SNASNLRELMIGKNGFSGKVPSLENL----   68 (258)
Q Consensus         2 l~~~~~~~~-~~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~l----   68 (258)
                      |++++|.++ ..+|..++      .++++|++|++.+|.+++..|..+  ..+++|++|++++|.+...+..+..+    
T Consensus        68 L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~  147 (312)
T 1wwl_A           68 LSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWL  147 (312)
T ss_dssp             CCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTC
T ss_pred             cccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhh
Confidence            678888884 44665543      148999999999999998888876  88999999999999998874446666    


Q ss_pred             -CCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeeccccccc--ccccc-cccccccceEEecccccCCc--cC
Q 048125           69 -HKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGM--LPEAV-GNFSTRLGILSVAENQLFGN--IP  142 (258)
Q Consensus        69 -~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~-~~~~~~l~~L~l~~~~~~~~--~~  142 (258)
                       ++|++|++++|.+....       +..+..+++|++|++++|.+.+.  .+..+ ....+++++|++++|.+...  .+
T Consensus       148 ~~~L~~L~L~~N~l~~~~-------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  220 (312)
T 1wwl_A          148 KPGLKVLSIAQAHSLNFS-------CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC  220 (312)
T ss_dssp             CTTCCEEEEESCSCCCCC-------TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHH
T ss_pred             cCCCcEEEeeCCCCccch-------HHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHH
Confidence             89999999999998633       34678899999999999987644  23333 12336899999999988731  22


Q ss_pred             -ccCCCCCcccEEEeeCCccccccC-CcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccC
Q 048125          143 -SGLRNLVNLELLDLSGNQFTSRIP-GSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKC  220 (258)
Q Consensus       143 -~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  220 (258)
                       ..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.++ .+|..+.  ++|++|++++|.+++. |. +..+
T Consensus       221 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l  295 (312)
T 1wwl_A          221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDEL  295 (312)
T ss_dssp             HHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTS
T ss_pred             HHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhC
Confidence             334567899999999999986553 45667899999999999998 7777766  8999999999999855 65 8899


Q ss_pred             cCCcEEeccCCcccc
Q 048125          221 QNLIVLDLYNNNLSG  235 (258)
Q Consensus       221 ~~L~~L~l~~~~l~~  235 (258)
                      ++|+.|++++|.+++
T Consensus       296 ~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          296 PQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CEEEEEECTTCTTTC
T ss_pred             CCCCEEeccCCCCCC
Confidence            999999999999884

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.92  E-value=1e-23  Score=177.57  Aligned_cols=231  Identities=28%  Similarity=0.413  Sum_probs=139.6

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccc
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHL   81 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~   81 (258)
                      |++.++.++ .+|. +. .+++|++|++++|.+++..+  +.++++|++|++++|.+....+ +..+++|++|++++|.+
T Consensus        51 L~l~~~~i~-~l~~-~~-~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l  124 (466)
T 1o6v_A           51 LQADRLGIK-SIDG-VE-YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQI  124 (466)
T ss_dssp             EECCSSCCC-CCTT-GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred             EecCCCCCc-cCcc-hh-hhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCC
Confidence            567788888 6775 44 59999999999999986544  8899999999999999987665 88999999999999988


Q ss_pred             cCcCCCccchhhhccccCCCCcEEEeecccccccccccccc--------------------cccccceEEecccccCCcc
Q 048125           82 GNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGN--------------------FSTRLGILSVAENQLFGNI  141 (258)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--------------------~~~~l~~L~l~~~~~~~~~  141 (258)
                      +...         .+..+++|++|++++|.+.+ ++. +..                    ..++|+.|++++|.+... 
T Consensus       125 ~~~~---------~~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-  192 (466)
T 1o6v_A          125 TDID---------PLKNLTNLNRLELSSNTISD-ISA-LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-  192 (466)
T ss_dssp             CCCG---------GGTTCTTCSEEEEEEEEECC-CGG-GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-
T ss_pred             CCCh---------HHcCCCCCCEEECCCCccCC-Chh-hccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC-
Confidence            7542         25667777777777776652 221 111                    113455555554443311 


Q ss_pred             CccCCCCCcccEEEeeCCccccccC--------------------CcccCccCCcEEEecCCccccccCCCCCCCCCcce
Q 048125          142 PSGLRNLVNLELLDLSGNQFTSRIP--------------------GSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMT  201 (258)
Q Consensus       142 ~~~~~~~~~L~~L~l~~~~~~~~~~--------------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  201 (258)
                       ..+..+++|++|++++|.+.+..+                    ..+..+++|++|++++|.+.+..+  +..+++|+.
T Consensus       193 -~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  269 (466)
T 1o6v_A          193 -SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTE  269 (466)
T ss_dssp             -GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSE
T ss_pred             -hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCE
Confidence             123333444444444444332211                    133444455555555554443222  445555555


Q ss_pred             EecccccccccCCcccccCcCCcEEeccCCccccccccccccccCcceeEecCCCCC
Q 048125          202 LNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       202 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~  258 (258)
                      |++++|.+.+..+  +..+++|+.|++++|++.+..+  +..++++ ++|++++|.+
T Consensus       270 L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L-~~L~L~~n~l  321 (466)
T 1o6v_A          270 LKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL-TYLTLYFNNI  321 (466)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTC-SEEECCSSCC
T ss_pred             EECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCC-CEEECcCCcC
Confidence            5555555553222  4555666666666666653222  5556666 6666666653

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=2.3e-23  Score=163.17  Aligned_cols=197  Identities=21%  Similarity=0.313  Sum_probs=155.5

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEecccc
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNH   80 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~   80 (258)
                      ++++++.++ .+|..+.   +++++|++.++.+++..+..|.++++|++|++++|.+...... +..+++|++|++++|.
T Consensus        21 l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~   96 (270)
T 2o6q_A           21 VDCSSKKLT-AIPSNIP---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK   96 (270)
T ss_dssp             EECTTSCCS-SCCSCCC---TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC
T ss_pred             EEccCCCCC-ccCCCCC---CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc
Confidence            466777888 7787543   5788999999988877667788899999999999988776665 5788899999999988


Q ss_pred             ccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCc
Q 048125           81 LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQ  160 (258)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  160 (258)
                      ++....       ..+..+++|++|++++|.+.+..+..+..+ ++|+.|++++|.+....+..+..+++|++|++++|.
T Consensus        97 l~~~~~-------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  168 (270)
T 2o6q_A           97 LQALPI-------GVFDQLVNLAELRLDRNQLKSLPPRVFDSL-TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ  168 (270)
T ss_dssp             CCCCCT-------TTTTTCSSCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCcCCH-------hHcccccCCCEEECCCCccCeeCHHHhCcC-cCCCEEECCCCcCCccCHhHccCCcccceeEecCCc
Confidence            875332       246678889999999988874444444444 589999999988875555567888899999999998


Q ss_pred             cccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEeccccccc
Q 048125          161 FTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLE  210 (258)
Q Consensus       161 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  210 (258)
                      +....+..|..+++|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus       169 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          169 LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            88766777888889999999999888655567888899999999998875

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.92  E-value=2.1e-24  Score=169.29  Aligned_cols=210  Identities=23%  Similarity=0.277  Sum_probs=171.1

Q ss_pred             cCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccC
Q 048125           20 TLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNA   99 (258)
Q Consensus        20 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~   99 (258)
                      .+++|++|++.++.++..  ..+..+++|++|++++|.+... ..+..+++|++|++++|.++...       ...+..+
T Consensus        39 ~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~l~~~~-------~~~~~~l  108 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLP-------NGVFDKL  108 (272)
T ss_dssp             HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSCCCCCC-------TTTTTTC
T ss_pred             cccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCccC-------hhHhcCC
Confidence            488999999999988742  3577899999999999988764 35788899999999999887533       2246788


Q ss_pred             CCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEE
Q 048125          100 SRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLG  179 (258)
Q Consensus       100 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  179 (258)
                      ++|++|++++|.+.+..+..+..+ ++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus       109 ~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  187 (272)
T 3rfs_A          109 TNLKELVLVENQLQSLPDGVFDKL-TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR  187 (272)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCCEEECCCCcCCccCHHHhccC-CCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEE
Confidence            999999999998884444334444 5899999999988755666678889999999999999877777788899999999


Q ss_pred             ecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccccccccCc
Q 048125          180 LNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSL  247 (258)
Q Consensus       180 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l  247 (258)
                      +++|.+.+..+..+..+++|+.|++++|.+.       +.+++|+.+++.+|++.|.+|.++..++..
T Consensus       188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~~  248 (272)
T 3rfs_A          188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAPD  248 (272)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred             CCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccccCCC
Confidence            9999998777777889999999999999876       346788899999999998898887766654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.91  E-value=1.4e-26  Score=188.80  Aligned_cols=252  Identities=15%  Similarity=0.199  Sum_probs=189.5

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCccccccc----ccccCCC-CCcEEEeecccCCCCCCC-cccc-----CC
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIP----VSISNAS-NLRELMIGKNGFSGKVPS-LENL-----HK   70 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~-~~~l-----~~   70 (258)
                      +++++|.+++.+|.... ..++|++|++++|.+++..+    ..+.+++ +|++|++++|.+...... +...     ++
T Consensus         3 ~~ls~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTS-IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EECCCCTTCCHHHHHHT-SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             cccccccchHHHHHHHh-CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            46788999977776444 46669999999999987766    6777888 899999999999765443 4443     89


Q ss_pred             cceEEeccccccCcCCCccchhhhccccC-CCCcEEEeeccccccccccccccc----ccccceEEecccccCCcc----
Q 048125           71 LQRVIISQNHLGNYGEKDNLEFVNSLVNA-SRLELLQISDNNFGGMLPEAVGNF----STRLGILSVAENQLFGNI----  141 (258)
Q Consensus        71 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~----~~~l~~L~l~~~~~~~~~----  141 (258)
                      |++|++++|.++..+..   .+...+..+ ++|++|++++|.+.+..+..+...    +.++++|++++|.+....    
T Consensus        82 L~~L~Ls~n~l~~~~~~---~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l  158 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSD---ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL  158 (362)
T ss_dssp             CCEEECCSSCGGGSCHH---HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred             ccEEECcCCcCChHHHH---HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence            99999999998865433   344445566 899999999999885555443322    358999999999887432    


Q ss_pred             CccCCCCC-cccEEEeeCCccccccCCcc----cCc-cCCcEEEecCCccccc----cCCCCCC-CCCcceEeccccccc
Q 048125          142 PSGLRNLV-NLELLDLSGNQFTSRIPGSI----GDL-QKLQMLGLNGNKFLGE----IPSSIGN-LTLLMTLNFAENMLE  210 (258)
Q Consensus       142 ~~~~~~~~-~L~~L~l~~~~~~~~~~~~~----~~~-~~L~~L~l~~~~~~~~----~~~~~~~-~~~L~~L~l~~n~~~  210 (258)
                      +..+...+ +|++|++++|.+....+..+    ... ++|++|++++|.+.+.    ++..+.. .++|++|++++|.+.
T Consensus       159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  238 (362)
T 3goz_A          159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH  238 (362)
T ss_dssp             HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred             HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence            33344444 99999999999986554433    344 5999999999998852    4445554 469999999999998


Q ss_pred             ccCC----cccccCcCCcEEeccCCcccc-------ccccccccccCcceeEecCCCCC
Q 048125          211 GSIP----SSLGKCQNLIVLDLYNNNLSG-------TIPSEVIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       211 ~~~~----~~~~~~~~L~~L~l~~~~l~~-------~~~~~~~~~~~l~~~L~l~~n~~  258 (258)
                      +..+    ..+..+++|+.|++++|.+.+       .++..+..++.+ ++||+++|++
T Consensus       239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L-~~LdL~~N~l  296 (362)
T 3goz_A          239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI-ILVDKNGKEI  296 (362)
T ss_dssp             CCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEE-EEECTTSCBC
T ss_pred             cHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCce-EEEecCCCcC
Confidence            6544    334667999999999999442       344567788889 9999999975

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.91  E-value=4.4e-23  Score=172.90  Aligned_cols=201  Identities=21%  Similarity=0.233  Sum_probs=129.5

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccc
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHL   81 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~   81 (258)
                      |++++|.++ .+| .+. ++++|++|++.+|.+++. +  +..+++|++|++++|.+...  .+..+++|++|++++|.+
T Consensus        47 L~Ls~n~l~-~~~-~l~-~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~--~~~~l~~L~~L~L~~N~l  118 (457)
T 3bz5_A           47 LDCHNSSIT-DMT-GIE-KLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL--DVTPLTKLTYLNCDTNKL  118 (457)
T ss_dssp             EECCSSCCC-CCT-TGG-GCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC--CCTTCTTCCEEECCSSCC
T ss_pred             EEccCCCcc-cCh-hhc-ccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee--ecCCCCcCCEEECCCCcC
Confidence            577788888 456 344 588888888888888764 3  77788888888888888765  377788888888888877


Q ss_pred             cCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCcc
Q 048125           82 GNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQF  161 (258)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  161 (258)
                      +..          .+..+++|++|++++|.+.+ ++  +..+ ++++.|++++|.....+  .+..+++|++|++++|.+
T Consensus       119 ~~l----------~~~~l~~L~~L~l~~N~l~~-l~--l~~l-~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l  182 (457)
T 3bz5_A          119 TKL----------DVSQNPLLTYLNCARNTLTE-ID--VSHN-TQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKI  182 (457)
T ss_dssp             SCC----------CCTTCTTCCEEECTTSCCSC-CC--CTTC-TTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCC
T ss_pred             Cee----------cCCCCCcCCEEECCCCccce-ec--cccC-CcCCEEECCCCCccccc--ccccCCcCCEEECCCCcc
Confidence            643          25567777777777777763 22  3333 46666666666322122  245556666666666666


Q ss_pred             ccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCcccc
Q 048125          162 TSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSG  235 (258)
Q Consensus       162 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~  235 (258)
                      .+ .+  +..+++|+.|++++|.+++.   .++.+++|+.|++++|.+.+ +|  ++.+++|+.|++++|++++
T Consensus       183 ~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~  247 (457)
T 3bz5_A          183 TE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE  247 (457)
T ss_dssp             CC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred             ce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence            53 22  45566666666666665532   25556666666666666653 33  4556666666666666653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=2.1e-23  Score=164.94  Aligned_cols=194  Identities=22%  Similarity=0.199  Sum_probs=126.0

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccc
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHL   81 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~   81 (258)
                      ++++++.++ .+|..+.   +++++|++.+|.+++..+..|.++++|++|++++|.+...... ..+++|++|++++|.+
T Consensus        15 l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l   89 (290)
T 1p9a_G           15 VNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQL   89 (290)
T ss_dssp             EECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCC
T ss_pred             EECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcC
Confidence            455666666 6665543   4677777777777666666677777777777777776654332 5667777777777766


Q ss_pred             cCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCcc
Q 048125           82 GNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQF  161 (258)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  161 (258)
                      +.        ++..+..+++|++|++++|.+.+..+..+..+ ++|+.|++++|.+....+..+..+++|++|++++|.+
T Consensus        90 ~~--------l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  160 (290)
T 1p9a_G           90 QS--------LPLLGQTLPALTVLDVSFNRLTSLPLGALRGL-GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (290)
T ss_dssp             SS--------CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             Cc--------CchhhccCCCCCEEECCCCcCcccCHHHHcCC-CCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence            53        23345566777777777777763333333333 4677777777776644455566677777777777777


Q ss_pred             ccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEeccccccc
Q 048125          162 TSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLE  210 (258)
Q Consensus       162 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  210 (258)
                      ....+..|..+++|++|++++|.++ .+|..+...++|+.+++++|++.
T Consensus       161 ~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            6555556666777777777777776 55666666667777777777664

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.91  E-value=2.8e-23  Score=174.09  Aligned_cols=179  Identities=21%  Similarity=0.180  Sum_probs=108.8

Q ss_pred             CCCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEecccc
Q 048125            1 DFDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNH   80 (258)
Q Consensus         1 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~   80 (258)
                      +|++++|.++ .+|  +. ++++|++|++.+|.+++. +  +.++++|++|++++|.+....  +..+++|++|++++|.
T Consensus        68 ~L~Ls~n~l~-~~~--~~-~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~  138 (457)
T 3bz5_A           68 KLICTSNNIT-TLD--LS-QNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNT  138 (457)
T ss_dssp             EEECCSSCCS-CCC--CT-TCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSC
T ss_pred             EEEccCCcCC-eEc--cc-cCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCc
Confidence            3678888888 455  44 689999999999988864 2  788899999999999887753  7888899999999998


Q ss_pred             ccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCc
Q 048125           81 LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQ  160 (258)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  160 (258)
                      ++..          .+..+++|++|++++|...+.++  +..+ ++++.|++++|.+.. ++  +..+++|++|++++|.
T Consensus       139 l~~l----------~l~~l~~L~~L~l~~n~~~~~~~--~~~l-~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~  202 (457)
T 3bz5_A          139 LTEI----------DVSHNTQLTELDCHLNKKITKLD--VTPQ-TQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNN  202 (457)
T ss_dssp             CSCC----------CCTTCTTCCEEECTTCSCCCCCC--CTTC-TTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSC
T ss_pred             ccee----------ccccCCcCCEEECCCCCcccccc--cccC-CcCCEEECCCCccce-ec--cccCCCCCEEECcCCc
Confidence            8753          24445556666665553322221  2222 355555555555442 22  3444555555555555


Q ss_pred             cccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEeccccccc
Q 048125          161 FTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLE  210 (258)
Q Consensus       161 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  210 (258)
                      +.+.   .+..+++|++|++++|.+.+ +|  +..+++|+.|++++|.+.
T Consensus       203 l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~  246 (457)
T 3bz5_A          203 ITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT  246 (457)
T ss_dssp             CSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS
T ss_pred             CCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCC
Confidence            4432   24444555555555555543 33  444455555555555544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.91  E-value=1e-25  Score=185.41  Aligned_cols=242  Identities=18%  Similarity=0.241  Sum_probs=187.5

Q ss_pred             CCCcchhccCCCCceEEecCCccccccc----ccccCCCCCcEEEeecccCCCCC---C-C-------ccccCCcceEEe
Q 048125           12 SLPSDLGFTLPNLEGLNLAGNQFTGPIP----VSISNASNLRELMIGKNGFSGKV---P-S-------LENLHKLQRVII   76 (258)
Q Consensus        12 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~---~-~-------~~~l~~L~~L~l   76 (258)
                      .++..+. .+++|++|++.+|.+++..+    ..+..+++|++|++++|.+....   + .       +..+++|++|++
T Consensus        23 ~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L  101 (386)
T 2ca6_A           23 SVFAVLL-EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL  101 (386)
T ss_dssp             TTSHHHH-HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred             HHHHHHh-cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence            3555555 58999999999999886543    34678999999999998654322   1 1       257899999999


Q ss_pred             ccccccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccc------------cccceEEecccccCC-ccC-
Q 048125           77 SQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFS------------TRLGILSVAENQLFG-NIP-  142 (258)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~------------~~l~~L~l~~~~~~~-~~~-  142 (258)
                      ++|.+...+..   .++..+..+++|++|++++|.+....+..+....            ++|+.|++++|.+.. ..+ 
T Consensus       102 s~n~l~~~~~~---~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  178 (386)
T 2ca6_A          102 SDNAFGPTAQE---PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE  178 (386)
T ss_dssp             CSCCCCTTTHH---HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred             CCCcCCHHHHH---HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH
Confidence            99998864332   4566788899999999999988643333332221            489999999998863 233 


Q ss_pred             --ccCCCCCcccEEEeeCCcccc-----ccCCcccCccCCcEEEecCCccc----cccCCCCCCCCCcceEecccccccc
Q 048125          143 --SGLRNLVNLELLDLSGNQFTS-----RIPGSIGDLQKLQMLGLNGNKFL----GEIPSSIGNLTLLMTLNFAENMLEG  211 (258)
Q Consensus       143 --~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~n~~~~  211 (258)
                        ..+..+++|++|++++|.+..     ..+..+..+++|++|++++|.+.    ..+|..+..+++|++|++++|.+.+
T Consensus       179 l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~  258 (386)
T 2ca6_A          179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA  258 (386)
T ss_dssp             HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred             HHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence              356678899999999998873     23447788999999999999985    4677788899999999999999975


Q ss_pred             c----CCccc--ccCcCCcEEeccCCcccc----cccccc-ccccCcceeEecCCCCC
Q 048125          212 S----IPSSL--GKCQNLIVLDLYNNNLSG----TIPSEV-IGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       212 ~----~~~~~--~~~~~L~~L~l~~~~l~~----~~~~~~-~~~~~l~~~L~l~~n~~  258 (258)
                      .    ++..+  +.+++|+.|++++|.+++    .++..+ ..+++| ++|++++|++
T Consensus       259 ~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L-~~L~l~~N~l  315 (386)
T 2ca6_A          259 RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL-LFLELNGNRF  315 (386)
T ss_dssp             HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTC-CEEECTTSBS
T ss_pred             hhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCc-eEEEccCCcC
Confidence            4    44555  338999999999999996    477777 557999 9999999975

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.91  E-value=4.4e-23  Score=158.71  Aligned_cols=197  Identities=20%  Similarity=0.267  Sum_probs=142.4

Q ss_pred             CCCcEEEeecccCCCCCCC-ccccCCcceEEecccc-ccCcCCCccchhhhccccCCCCcEEEeec-ccccccccccccc
Q 048125           46 SNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNH-LGNYGEKDNLEFVNSLVNASRLELLQISD-NNFGGMLPEAVGN  122 (258)
Q Consensus        46 ~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~  122 (258)
                      .++++|++++|.+...... +..+++|++|++++|. ++.+..       ..+..+++|++|++++ |.+....+..+..
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~-------~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~  103 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLES-------HSFYNLSKVTHIEIRNTRNLTYIDPDALKE  103 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECT-------TTEESCTTCCEEEEEEETTCCEECTTSEEC
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCH-------hHcCCCcCCcEEECCCCCCeeEcCHHHhCC
Confidence            3677777777777766553 6677778888887775 654322       2566777888888887 6666332333333


Q ss_pred             cccccceEEecccccCCccCccCCCCCccc---EEEeeCC-ccccccCCcccCccCCc-EEEecCCccccccCCCCCCCC
Q 048125          123 FSTRLGILSVAENQLFGNIPSGLRNLVNLE---LLDLSGN-QFTSRIPGSIGDLQKLQ-MLGLNGNKFLGEIPSSIGNLT  197 (258)
Q Consensus       123 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~  197 (258)
                      + ++|+.|++++|.+.. +|. +..+++|+   +|++++| .+....+..|..+++|+ +|++++|.++...+..+.. +
T Consensus       104 l-~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~  179 (239)
T 2xwt_C          104 L-PLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-T  179 (239)
T ss_dssp             C-TTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-C
T ss_pred             C-CCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-C
Confidence            3 578888888887763 454 66677776   9999998 88866677788889999 9999999888443445555 7


Q ss_pred             CcceEeccccc-ccccCCcccccC-cCCcEEeccCCccccccccccccccCcceeEecCCCC
Q 048125          198 LLMTLNFAENM-LEGSIPSSLGKC-QNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQ  257 (258)
Q Consensus       198 ~L~~L~l~~n~-~~~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~  257 (258)
                      +|++|++++|+ +.+..+..+..+ ++|+.|++++|+++ .+|..  .++.+ ++|++++++
T Consensus       180 ~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L-~~L~l~~~~  237 (239)
T 2xwt_C          180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHL-KELIARNTW  237 (239)
T ss_dssp             EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTC-SEEECTTC-
T ss_pred             CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccC-ceeeccCcc
Confidence            89999999995 876667778888 89999999999998 45544  56778 888888764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.90  E-value=2e-22  Score=174.08  Aligned_cols=224  Identities=28%  Similarity=0.349  Sum_probs=139.7

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccc
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHL   81 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~   81 (258)
                      |+++++.++ .+|..++   ++|++|++.+|.++. +|.   .+++|++|++++|.+...+.   .+++|++|++++|.+
T Consensus        45 L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l  113 (622)
T 3g06_A           45 LNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPL  113 (622)
T ss_dssp             EECCSSCCS-CCCSCCC---TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCC
T ss_pred             EEecCCCcC-ccChhhC---CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcC
Confidence            567788888 7787654   678888888887774 443   46778888888887765443   557777777777766


Q ss_pred             cCcCCCc----cc-----hhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCccc
Q 048125           82 GNYGEKD----NL-----EFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLE  152 (258)
Q Consensus        82 ~~~~~~~----~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~  152 (258)
                      +.++...    .+     .+...-..+++|++|++++|.+. .+|..    +.+++.|++++|.+.. ++   ..+++|+
T Consensus       114 ~~l~~~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~-~l~~~----~~~L~~L~L~~N~l~~-l~---~~~~~L~  184 (622)
T 3g06_A          114 THLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLA-SLPAL----PSELCKLWAYNNQLTS-LP---MLPSGLQ  184 (622)
T ss_dssp             CCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSC-CC---CCCTTCC
T ss_pred             CCCCCCCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCC-CcCCc----cCCCCEEECCCCCCCC-Cc---ccCCCCc
Confidence            6532200    00     00000001255666666666554 22221    1233333333333321 11   1124455


Q ss_pred             EEEeeCCcccc-------------------ccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccC
Q 048125          153 LLDLSGNQFTS-------------------RIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSI  213 (258)
Q Consensus       153 ~L~l~~~~~~~-------------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  213 (258)
                      +|++++|.+.+                   ..+.   .+++|++|++++|.+++ +|   ..+++|+.|++++|.+. .+
T Consensus       185 ~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~l  256 (622)
T 3g06_A          185 ELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SL  256 (622)
T ss_dssp             EEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CC
T ss_pred             EEECCCCCCCCCCCccchhhEEECcCCcccccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cC
Confidence            55555554442                   1221   13678888888888773 45   45578899999999888 45


Q ss_pred             CcccccCcCCcEEeccCCccccccccccccccCcceeEecCCCCC
Q 048125          214 PSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       214 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~  258 (258)
                      |.   .+++|+.|++++|+|+ .+|..+..++++ ++|+|++|++
T Consensus       257 p~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L-~~L~L~~N~l  296 (622)
T 3g06_A          257 PM---LPSGLLSLSVYRNQLT-RLPESLIHLSSE-TTVNLEGNPL  296 (622)
T ss_dssp             CC---CCTTCCEEECCSSCCC-SCCGGGGGSCTT-CEEECCSCCC
T ss_pred             Cc---ccccCcEEeCCCCCCC-cCCHHHhhcccc-CEEEecCCCC
Confidence            54   5688999999999999 789899999999 9999999986

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=1.6e-23  Score=164.17  Aligned_cols=201  Identities=21%  Similarity=0.255  Sum_probs=165.1

Q ss_pred             CCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCCCC
Q 048125           23 NLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRL  102 (258)
Q Consensus        23 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L  102 (258)
                      ++..+++..+.+.+.  ..+..+++|+.|++.++.+... ..+..+++|++|++++|.+...         ..+..+++|
T Consensus        20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~-~~l~~l~~L~~L~l~~n~l~~~---------~~l~~l~~L   87 (272)
T 3rfs_A           20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV-QGIQYLPNVRYLALGGNKLHDI---------SALKELTNL   87 (272)
T ss_dssp             HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC-TTGGGCTTCCEEECTTSCCCCC---------GGGTTCTTC
T ss_pred             HHHHHHhcCcccccc--cccccccceeeeeeCCCCcccc-cccccCCCCcEEECCCCCCCCc---------hhhcCCCCC
Confidence            455566666666533  3456789999999999988753 3478899999999999988752         367788999


Q ss_pred             cEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecC
Q 048125          103 ELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNG  182 (258)
Q Consensus       103 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  182 (258)
                      ++|++++|.+.+..+..+..+ ++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus        88 ~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  166 (272)
T 3rfs_A           88 TYLILTGNQLQSLPNGVFDKL-TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY  166 (272)
T ss_dssp             CEEECTTSCCCCCCTTTTTTC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEECCCCccCccChhHhcCC-cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCC
Confidence            999999999884444434444 6899999999998866666788899999999999999877777788999999999999


Q ss_pred             CccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccc
Q 048125          183 NKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGT  236 (258)
Q Consensus       183 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  236 (258)
                      |.+++..+..++.+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+.
T Consensus       167 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  220 (272)
T 3rfs_A          167 NQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT  220 (272)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc
Confidence            999877677789999999999999999977777788999999999999988743

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.90  E-value=1.3e-22  Score=156.05  Aligned_cols=205  Identities=22%  Similarity=0.273  Sum_probs=168.3

Q ss_pred             ccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeeccc-CCCCCC-CccccCCcceEEecc-ccccCcC
Q 048125            9 LQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNG-FSGKVP-SLENLHKLQRVIISQ-NHLGNYG   85 (258)
Q Consensus         9 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~-~~~~l~~L~~L~l~~-~~~~~~~   85 (258)
                      ++ ++|. +   .++|++|++.++.+++..+..|.++++|++|++++|. +..... .+..+++|++|++++ |.++...
T Consensus        23 l~-~ip~-~---~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~   97 (239)
T 2xwt_C           23 IQ-RIPS-L---PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID   97 (239)
T ss_dssp             CS-SCCC-C---CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred             cc-ccCC-C---CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence            44 7777 3   4589999999999998777789999999999999997 776665 488999999999998 8887533


Q ss_pred             CCccchhhhccccCCCCcEEEeecccccccccccccccccccc---eEEeccc-ccCCccCccCCCCCccc-EEEeeCCc
Q 048125           86 EKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLG---ILSVAEN-QLFGNIPSGLRNLVNLE-LLDLSGNQ  160 (258)
Q Consensus        86 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~  160 (258)
                             ...+..+++|++|++++|.+. .+|. +... ++++   .|++++| .+....+..+..+++|+ ++++++|.
T Consensus        98 -------~~~f~~l~~L~~L~l~~n~l~-~lp~-~~~l-~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~  167 (239)
T 2xwt_C           98 -------PDALKELPLLKFLGIFNTGLK-MFPD-LTKV-YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG  167 (239)
T ss_dssp             -------TTSEECCTTCCEEEEEEECCC-SCCC-CTTC-CBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC
T ss_pred             -------HHHhCCCCCCCEEeCCCCCCc-cccc-cccc-cccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC
Confidence                   236778999999999999988 4665 4444 4777   9999999 88755566788999999 99999999


Q ss_pred             cccccCCcccCccCCcEEEecCCc-cccccCCCCCCC-CCcceEecccccccccCCcccccCcCCcEEeccCCc
Q 048125          161 FTSRIPGSIGDLQKLQMLGLNGNK-FLGEIPSSIGNL-TLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNN  232 (258)
Q Consensus       161 ~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~  232 (258)
                      +....+..|.. ++|++|++++|+ +++..+..|..+ ++|+.|++++|.+.+ +|..  .+++|+.|+++++.
T Consensus       168 l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          168 FTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             CCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred             CcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence            98655666666 899999999995 886667789999 999999999999984 4443  67899999998874

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.90  E-value=2.2e-23  Score=166.54  Aligned_cols=227  Identities=20%  Similarity=0.210  Sum_probs=173.0

Q ss_pred             CCCCceEEecCCcccccccc---cccCCCCCcEEEeecccCCCCCCC-c--cccCCcceEEeccccccCcCCCccchhhh
Q 048125           21 LPNLEGLNLAGNQFTGPIPV---SISNASNLRELMIGKNGFSGKVPS-L--ENLHKLQRVIISQNHLGNYGEKDNLEFVN   94 (258)
Q Consensus        21 ~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~-~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~   94 (258)
                      ...++.+.+.++.++.....   .+..+++|++|++++|.+....+. +  ..+++|++|++++|.++.....   ....
T Consensus        63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~---~~~~  139 (310)
T 4glp_A           63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSW---LAEL  139 (310)
T ss_dssp             SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSS---HHHH
T ss_pred             hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhh---hHHH
Confidence            34567788877766532111   122356799999999999765555 4  8899999999999998853221   1113


Q ss_pred             ccccCCCCcEEEeecccccccccccccccccccceEEecccccCCc--c--CccCCCCCcccEEEeeCCccccccCC---
Q 048125           95 SLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGN--I--PSGLRNLVNLELLDLSGNQFTSRIPG---  167 (258)
Q Consensus        95 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~--~--~~~~~~~~~L~~L~l~~~~~~~~~~~---  167 (258)
                      .+..+++|++|++++|.+.+..+..+..+ ++|++|++++|.+...  .  +..+..+++|++|++++|.+.. .+.   
T Consensus       140 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~  217 (310)
T 4glp_A          140 QQWLKPGLKVLSIAQAHSPAFSCEQVRAF-PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCA  217 (310)
T ss_dssp             HTTBCSCCCEEEEECCSSCCCCTTSCCCC-TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHH
T ss_pred             HhhhccCCCEEEeeCCCcchhhHHHhccC-CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHH
Confidence            44578999999999999985555555555 5899999999986421  2  2334678899999999999973 232   


Q ss_pred             -cccCccCCcEEEecCCccccccCCCCCCC---CCcceEecccccccccCCcccccCcCCcEEeccCCcccccccccccc
Q 048125          168 -SIGDLQKLQMLGLNGNKFLGEIPSSIGNL---TLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIG  243 (258)
Q Consensus       168 -~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~  243 (258)
                       .+..+++|++|++++|.+.+..|..+..+   ++|++|++++|.+. .+|..+.  ++|+.|++++|+|++ +|. +..
T Consensus       218 ~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~  292 (310)
T 4glp_A          218 ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-PDE  292 (310)
T ss_dssp             HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-TTS
T ss_pred             HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-hhh
Confidence             35678999999999999997777777666   79999999999999 6677664  899999999999994 444 677


Q ss_pred             ccCcceeEecCCCCC
Q 048125          244 LSSLSIYLDLSQNQL  258 (258)
Q Consensus       244 ~~~l~~~L~l~~n~~  258 (258)
                      ++.+ ++|++++|++
T Consensus       293 l~~L-~~L~L~~N~l  306 (310)
T 4glp_A          293 LPEV-DNLTLDGNPF  306 (310)
T ss_dssp             CCCC-SCEECSSTTT
T ss_pred             CCCc-cEEECcCCCC
Confidence            8999 9999999986

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.90  E-value=3e-26  Score=192.63  Aligned_cols=206  Identities=16%  Similarity=0.171  Sum_probs=107.3

Q ss_pred             CCCCcCcccCCCCcchhccCC----CCceEEecCCcccc----cccccccCCCCCcEEEeecccCCCCCCC------ccc
Q 048125            2 FDFPFNQLQGSLPSDLGFTLP----NLEGLNLAGNQFTG----PIPVSISNASNLRELMIGKNGFSGKVPS------LEN   67 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~----~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~------~~~   67 (258)
                      |++++|.+++..+..++..++    +|++|++.+|.+++    .++..+..+++|++|++++|.+......      ...
T Consensus        61 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~  140 (461)
T 1z7x_W           61 LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDP  140 (461)
T ss_dssp             EECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTST
T ss_pred             EeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcC
Confidence            445555555433444443344    46666666665553    2345555666666666666655321111      112


Q ss_pred             cCCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeecccccccccccccc----cccccceEEecccccCCc---
Q 048125           68 LHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGN----FSTRLGILSVAENQLFGN---  140 (258)
Q Consensus        68 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~l~~L~l~~~~~~~~---  140 (258)
                      .++|++|++++|.++..+..   .+...+..+++|++|++++|.+....+..+..    ..++++.|++++|.+...   
T Consensus       141 ~~~L~~L~L~~n~l~~~~~~---~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  217 (461)
T 1z7x_W          141 QCRLEKLQLEYCSLSAASCE---PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR  217 (461)
T ss_dssp             TCCCCEEECTTSCCBGGGHH---HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH
T ss_pred             CCcceEEECCCCCCCHHHHH---HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH
Confidence            34566666666655542221   23445556677777777777665332222221    123677777777766532   


Q ss_pred             -cCccCCCCCcccEEEeeCCcccccc-----CCcccCccCCcEEEecCCccccc----cCCCCCCCCCcceEeccccccc
Q 048125          141 -IPSGLRNLVNLELLDLSGNQFTSRI-----PGSIGDLQKLQMLGLNGNKFLGE----IPSSIGNLTLLMTLNFAENMLE  210 (258)
Q Consensus       141 -~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~  210 (258)
                       ++..+..+++|++|++++|.+....     +..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+.
T Consensus       218 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  297 (461)
T 1z7x_W          218 DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG  297 (461)
T ss_dssp             HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred             HHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence             2444445666777777776655321     12222355666666666665532    3444445556666666666554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.90  E-value=2e-26  Score=193.67  Aligned_cols=255  Identities=23%  Similarity=0.258  Sum_probs=155.7

Q ss_pred             CCCCcCcccC----CCCcchhccCCCCceEEecCCccccccccccc-----CCCCCcEEEeecccCCCCCC-----Cccc
Q 048125            2 FDFPFNQLQG----SLPSDLGFTLPNLEGLNLAGNQFTGPIPVSIS-----NASNLRELMIGKNGFSGKVP-----SLEN   67 (258)
Q Consensus         2 l~~~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~-----~~~~   67 (258)
                      |++++|.+++    .++..+. ++++|++|++.+|.+++..+..+.     ..++|++|++++|.+.....     .+..
T Consensus        90 L~L~~n~i~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~  168 (461)
T 1z7x_W           90 LSLQNCCLTGAGCGVLSSTLR-TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRA  168 (461)
T ss_dssp             EECTTSCCBGGGHHHHHHHTT-SCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHH
T ss_pred             EEccCCCCCHHHHHHHHHHHc-cCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhh
Confidence            5677777773    2344444 577888888887776643333222     23456666666666543221     1333


Q ss_pred             cCCcceEEeccccccCcCCC--------------------------ccchhhhccccCCCCcEEEeecccccccc----c
Q 048125           68 LHKLQRVIISQNHLGNYGEK--------------------------DNLEFVNSLVNASRLELLQISDNNFGGML----P  117 (258)
Q Consensus        68 l~~L~~L~l~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~  117 (258)
                      +++|++|++++|.+...+..                          ....++..+..+++|++|++++|.+.+..    .
T Consensus       169 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~  248 (461)
T 1z7x_W          169 KPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELC  248 (461)
T ss_dssp             CTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHH
T ss_pred             CCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHH
Confidence            45555555555544321110                          00013344555677777777777654321    1


Q ss_pred             ccccccccccceEEecccccCCc----cCccCCCCCcccEEEeeCCccccccCCccc-----CccCCcEEEecCCccccc
Q 048125          118 EAVGNFSTRLGILSVAENQLFGN----IPSGLRNLVNLELLDLSGNQFTSRIPGSIG-----DLQKLQMLGLNGNKFLGE  188 (258)
Q Consensus       118 ~~~~~~~~~l~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~  188 (258)
                      ..+....++++.|++++|.+...    ++..+..+++|++|++++|.+....+..+.     ..++|++|++++|.+.+.
T Consensus       249 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~  328 (461)
T 1z7x_W          249 PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA  328 (461)
T ss_dssp             HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred             HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH
Confidence            22222234677777777766532    344555567788888888777543222222     225788888888877643


Q ss_pred             ----cCCCCCCCCCcceEecccccccccCCccccc-----CcCCcEEeccCCcccc----ccccccccccCcceeEecCC
Q 048125          189 ----IPSSIGNLTLLMTLNFAENMLEGSIPSSLGK-----CQNLIVLDLYNNNLSG----TIPSEVIGLSSLSIYLDLSQ  255 (258)
Q Consensus       189 ----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-----~~~L~~L~l~~~~l~~----~~~~~~~~~~~l~~~L~l~~  255 (258)
                          ++..+..+++|++|++++|.+.+..+..+..     .++|+.|++++|++++    .++..+..++++ ++|++++
T Consensus       329 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L-~~L~l~~  407 (461)
T 1z7x_W          329 CCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL-RELDLSN  407 (461)
T ss_dssp             GHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC-CEEECCS
T ss_pred             HHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCc-cEEECCC
Confidence                3455667788999999999887655544433     6789999999999885    677788888999 9999999


Q ss_pred             CCC
Q 048125          256 NQL  258 (258)
Q Consensus       256 n~~  258 (258)
                      |++
T Consensus       408 N~i  410 (461)
T 1z7x_W          408 NCL  410 (461)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            875

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.89  E-value=1.1e-22  Score=170.42  Aligned_cols=232  Identities=23%  Similarity=0.282  Sum_probs=115.0

Q ss_pred             CCCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCC-------------CcEEEeecccCCCCCCCccc
Q 048125            1 DFDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASN-------------LRELMIGKNGFSGKVPSLEN   67 (258)
Q Consensus         1 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-------------L~~L~l~~~~~~~~~~~~~~   67 (258)
                      +|++++|.+ +.+|..++ ++++|++|++.+|.+.+..|..+.++.+             +++|++++|.+...+..   
T Consensus        15 ~L~l~~n~l-~~iP~~i~-~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~---   89 (454)
T 1jl5_A           15 EPLRHSSNL-TEMPVEAE-NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL---   89 (454)
T ss_dssp             ---------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC---
T ss_pred             hhhcccCch-hhCChhHh-cccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC---
Confidence            367788888 59999887 5999999999999888888888877765             48888888887664432   


Q ss_pred             cCCcceEEeccccccCcCCCc-cch-------hhhccccC-CCCcEEEeecccccccccccccccccccceEEecccccC
Q 048125           68 LHKLQRVIISQNHLGNYGEKD-NLE-------FVNSLVNA-SRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLF  138 (258)
Q Consensus        68 l~~L~~L~l~~~~~~~~~~~~-~~~-------~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~  138 (258)
                      .++|++|++++|.++.++... .+.       -...+... ++|++|++++|.+.+ +| .+..+ +++++|++++|.+.
T Consensus        90 ~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l-~~L~~L~l~~N~l~  166 (454)
T 1jl5_A           90 PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNS-SFLKIIDVDNNSLK  166 (454)
T ss_dssp             CTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTC-TTCCEEECCSSCCS
T ss_pred             cCCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCC-CCCCEEECCCCcCc
Confidence            357777777777776532110 000       00000011 345555555554442 33 23322 34555555555443


Q ss_pred             CccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccc
Q 048125          139 GNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLG  218 (258)
Q Consensus       139 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  218 (258)
                       .+|..+   ++|++|++++|.+.+ .| .+..+++|++|++++|.+.+ +|...   ++|++|++++|.+. .+|. ++
T Consensus       167 -~lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~-~~  234 (454)
T 1jl5_A          167 -KLPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE-ELPE-LQ  234 (454)
T ss_dssp             -CCCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCCC-CT
T ss_pred             -ccCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-cccc-cC
Confidence             222221   355555555555543 23 35555555666665555542 33221   35566666666655 4442 55


Q ss_pred             cCcCCcEEeccCCccccccccccccccCcceeEecCCCC
Q 048125          219 KCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQ  257 (258)
Q Consensus       219 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~  257 (258)
                      .+++|+.|++++|+++ .+|..   .+++ ++|++++|.
T Consensus       235 ~l~~L~~L~l~~N~l~-~l~~~---~~~L-~~L~l~~N~  268 (454)
T 1jl5_A          235 NLPFLTTIYADNNLLK-TLPDL---PPSL-EALNVRDNY  268 (454)
T ss_dssp             TCTTCCEEECCSSCCS-SCCSC---CTTC-CEEECCSSC
T ss_pred             CCCCCCEEECCCCcCC-ccccc---cccc-CEEECCCCc
Confidence            6666666666666666 33332   1444 555555554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=8e-22  Score=152.75  Aligned_cols=181  Identities=22%  Similarity=0.308  Sum_probs=150.3

Q ss_pred             CCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeeccccccccccccccccc
Q 048125           46 SNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFST  125 (258)
Q Consensus        46 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  125 (258)
                      ...++++++++.+..++..+.  +.+++|++++|.++....       ..+..+++|++|++++|.+.+..+..+..+ +
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~-------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~   83 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSD-------ATFRGLTKLTWLNLDYNQLQTLSAGVFDDL-T   83 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCT-------TTTTTCTTCCEEECTTSCCCCCCTTTTTTC-T
T ss_pred             CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCH-------hHhcCcccCCEEECCCCcCCccCHhHhccC-C
Confidence            356789999998887776554  689999999999886432       357788999999999999885555445544 5


Q ss_pred             ccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecc
Q 048125          126 RLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFA  205 (258)
Q Consensus       126 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  205 (258)
                      +|+.|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        84 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  163 (251)
T 3m19_A           84 ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS  163 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECC
Confidence            89999999999886666778889999999999999987777778889999999999999986666688999999999999


Q ss_pred             cccccccCCcccccCcCCcEEeccCCccccc
Q 048125          206 ENMLEGSIPSSLGKCQNLIVLDLYNNNLSGT  236 (258)
Q Consensus       206 ~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  236 (258)
                      +|.+.+..+..+..+++|+.|++++|.+.+.
T Consensus       164 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          164 TNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            9999877777888899999999999998744

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=3.7e-22  Score=159.13  Aligned_cols=193  Identities=24%  Similarity=0.396  Sum_probs=148.4

Q ss_pred             cCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccC
Q 048125           20 TLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNA   99 (258)
Q Consensus        20 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~   99 (258)
                      .+++|++|++.++.++. ++ .+..+++|++|++++|.+..... +..+++|++|++++|.++..         ..+..+
T Consensus        39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~---------~~~~~l  106 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNV---------SAIAGL  106 (308)
T ss_dssp             HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCC---------GGGTTC
T ss_pred             HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCc---------hhhcCC
Confidence            47788899998888874 33 57788889999999888876665 78888899999998887653         256778


Q ss_pred             CCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEE
Q 048125          100 SRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLG  179 (258)
Q Consensus       100 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  179 (258)
                      ++|++|++++|.+.+ ++. +..+ ++|+.|++++|.+....+  +..+++|++|++++|.+.+..+  +..+++|+.|+
T Consensus       107 ~~L~~L~l~~n~l~~-~~~-l~~l-~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~  179 (308)
T 1h6u_A          107 QSIKTLDLTSTQITD-VTP-LAGL-SNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLK  179 (308)
T ss_dssp             TTCCEEECTTSCCCC-CGG-GTTC-TTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             CCCCEEECCCCCCCC-chh-hcCC-CCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEE
Confidence            889999998888873 343 4444 588888888887764322  6778888999999888874333  77888899999


Q ss_pred             ecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCcccc
Q 048125          180 LNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSG  235 (258)
Q Consensus       180 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~  235 (258)
                      +++|.+.+..+  +..+++|++|++++|.+.+..  .+..+++|+.|++++|.+++
T Consensus       180 l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          180 ADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             CCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence            98888874332  778888899999999887443  36788889999999888873

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=2.8e-22  Score=159.83  Aligned_cols=206  Identities=22%  Similarity=0.341  Sum_probs=166.5

Q ss_pred             EEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEE
Q 048125           27 LNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQ  106 (258)
Q Consensus        27 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  106 (258)
                      +.+....+.+..  .+..+++|++|+++++.+.... .+..+++|++|++++|.+...        .. +..+++|++|+
T Consensus        24 ~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~--------~~-~~~l~~L~~L~   91 (308)
T 1h6u_A           24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDL--------AP-LKNLTKITELE   91 (308)
T ss_dssp             HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCC--------GG-GTTCCSCCEEE
T ss_pred             HHhCCCCcCcee--cHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCC--------hh-HccCCCCCEEE
Confidence            344444444322  3456889999999999987654 688899999999999988753        22 78899999999


Q ss_pred             eecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccc
Q 048125          107 ISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFL  186 (258)
Q Consensus       107 l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  186 (258)
                      +++|.+. .++ .+..+ ++|+.|++++|.+.. ++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.
T Consensus        92 L~~n~l~-~~~-~~~~l-~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~  164 (308)
T 1h6u_A           92 LSGNPLK-NVS-AIAGL-QSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS  164 (308)
T ss_dssp             CCSCCCS-CCG-GGTTC-TTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred             ccCCcCC-Cch-hhcCC-CCCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC
Confidence            9999987 344 45544 589999999998874 33 37889999999999999985433  888999999999999998


Q ss_pred             cccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccccccccCcceeEecCCCCC
Q 048125          187 GEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       187 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~  258 (258)
                      +. +. +..+++|+.|++++|.+.+..+  +..+++|+.|++++|++.+..  .+..++++ ++|++++|++
T Consensus       165 ~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L-~~L~l~~N~i  229 (308)
T 1h6u_A          165 DL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNL-FIVTLTNQTI  229 (308)
T ss_dssp             CC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTC-CEEEEEEEEE
T ss_pred             CC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCC-CEEEccCCee
Confidence            53 33 8899999999999999985433  788999999999999999544  37889999 9999998864

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=2.2e-22  Score=160.69  Aligned_cols=202  Identities=20%  Similarity=0.161  Sum_probs=162.4

Q ss_pred             CCCCceEEecCCcccccccccc--cCCCCCcEEEeecccCCCCCCC-----ccccCCcceEEeccccccCcCCCccchhh
Q 048125           21 LPNLEGLNLAGNQFTGPIPVSI--SNASNLRELMIGKNGFSGKVPS-----LENLHKLQRVIISQNHLGNYGEKDNLEFV   93 (258)
Q Consensus        21 ~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~-----~~~l~~L~~L~l~~~~~~~~~~~~~~~~~   93 (258)
                      +++|++|++.+|.+.+..|..+  .++++|++|++++|.+......     +..+++|++|++++|.+...       .+
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-------~~  162 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAF-------SC  162 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCC-------CT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchh-------hH
Confidence            5679999999999998888887  8899999999999999865442     35689999999999999763       33


Q ss_pred             hccccCCCCcEEEeeccccccc--ccccc-cccccccceEEecccccCCccCc----cCCCCCcccEEEeeCCccccccC
Q 048125           94 NSLVNASRLELLQISDNNFGGM--LPEAV-GNFSTRLGILSVAENQLFGNIPS----GLRNLVNLELLDLSGNQFTSRIP  166 (258)
Q Consensus        94 ~~~~~~~~L~~L~l~~~~~~~~--~~~~~-~~~~~~l~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~  166 (258)
                      ..+..+++|++|++++|.+.+.  ++... ....++|++|++++|.+. .++.    .+..+++|++|++++|.+.+..|
T Consensus       163 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p  241 (310)
T 4glp_A          163 EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVN  241 (310)
T ss_dssp             TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCC
T ss_pred             HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccch
Confidence            4677899999999999986532  22222 122358999999999886 2222    24677899999999999997667


Q ss_pred             CcccCc---cCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCcccc
Q 048125          167 GSIGDL---QKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSG  235 (258)
Q Consensus       167 ~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~  235 (258)
                      ..+..+   ++|++|++++|.++ .+|..+.  ++|++|++++|.+++ +|. +..+++|+.|++++|.+++
T Consensus       242 ~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          242 PSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             SCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-TTSCCCCSCEECSSTTTSC
T ss_pred             hhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-hhhCCCccEEECcCCCCCC
Confidence            666665   69999999999999 6677664  899999999999984 343 6788999999999999873

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=1.9e-23  Score=168.58  Aligned_cols=201  Identities=16%  Similarity=0.226  Sum_probs=122.9

Q ss_pred             CCCceEEecCCcccccccccccCCCCCcEEEeecccCCCC-C-CCccccCCcceEEeccccccCcCCCccchhhhccccC
Q 048125           22 PNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGK-V-PSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNA   99 (258)
Q Consensus        22 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~   99 (258)
                      ++++.+++.++.+.+..+. +..+++|++|++++|.+... . ..+..+++|++|++++|.+++       ..+..+..+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~-------~~~~~l~~~  141 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD-------PIVNTLAKN  141 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCH-------HHHHHHTTC
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCH-------HHHHHHhcC
Confidence            6677777777776654443 44667777777777765432 2 225666777777777776654       344456667


Q ss_pred             CCCcEEEeecc-ccccc-ccccccccccccceEEeccc-ccCCc-cCccCCCCC-cccEEEeeCCc--cc-cccCCcccC
Q 048125          100 SRLELLQISDN-NFGGM-LPEAVGNFSTRLGILSVAEN-QLFGN-IPSGLRNLV-NLELLDLSGNQ--FT-SRIPGSIGD  171 (258)
Q Consensus       100 ~~L~~L~l~~~-~~~~~-~~~~~~~~~~~l~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~~~~--~~-~~~~~~~~~  171 (258)
                      ++|++|++++| .+.+. ++..+..+ ++|++|++++| .+... ++..+..++ +|++|++++|.  +. ...+..+..
T Consensus       142 ~~L~~L~L~~~~~l~~~~l~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~  220 (336)
T 2ast_B          142 SNLVRLNLSGCSGFSEFALQTLLSSC-SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR  220 (336)
T ss_dssp             TTCSEEECTTCBSCCHHHHHHHHHHC-TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH
T ss_pred             CCCCEEECCCCCCCCHHHHHHHHhcC-CCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh
Confidence            77777777777 44432 33333333 46777777777 55432 344455566 77777777773  32 233445556


Q ss_pred             ccCCcEEEecCCc-cccccCCCCCCCCCcceEeccccc-ccccCCcccccCcCCcEEeccCC
Q 048125          172 LQKLQMLGLNGNK-FLGEIPSSIGNLTLLMTLNFAENM-LEGSIPSSLGKCQNLIVLDLYNN  231 (258)
Q Consensus       172 ~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~~  231 (258)
                      +++|++|++++|. +++..+..+..+++|++|++++|. +.......++.+++|+.|++++|
T Consensus       221 ~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          221 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            6777777777776 554555566667777777777774 33222234566777777777777

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=7.1e-24  Score=171.13  Aligned_cols=203  Identities=13%  Similarity=0.155  Sum_probs=85.1

Q ss_pred             CCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeeccccccccccccccccc
Q 048125           46 SNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFST  125 (258)
Q Consensus        46 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  125 (258)
                      ++++.|+++++.+......+..+++|++|++++|.+...      .+...+..+++|++|++++|.+.+..+..+..+ +
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~------~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~-~  142 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS------TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKN-S  142 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHH------HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTC-T
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHH------HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcC-C
Confidence            444455554444444333333444455555554444320      123334444455555555444443333333332 3


Q ss_pred             ccceEEeccc-ccCCc-cCccCCCCCcccEEEeeCC-ccccc-cCCcccCcc-CCcEEEecCCc--cc-cccCCCCCCCC
Q 048125          126 RLGILSVAEN-QLFGN-IPSGLRNLVNLELLDLSGN-QFTSR-IPGSIGDLQ-KLQMLGLNGNK--FL-GEIPSSIGNLT  197 (258)
Q Consensus       126 ~l~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~~~~--~~-~~~~~~~~~~~  197 (258)
                      +|++|++++| .+... ++..+..+++|++|++++| .+.+. .+..+..++ +|++|++++|.  ++ +.++..+..++
T Consensus       143 ~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~  222 (336)
T 2ast_B          143 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP  222 (336)
T ss_dssp             TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCT
T ss_pred             CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCC
Confidence            4555555444 23211 2223334444555555544 44321 233334444 45555554442  22 12233334444


Q ss_pred             CcceEeccccc-ccccCCcccccCcCCcEEeccCCc-cccccccccccccCcceeEecCCC
Q 048125          198 LLMTLNFAENM-LEGSIPSSLGKCQNLIVLDLYNNN-LSGTIPSEVIGLSSLSIYLDLSQN  256 (258)
Q Consensus       198 ~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~l~~~L~l~~n  256 (258)
                      +|++|++++|. +++..+..+..+++|+.|++++|. +.......+..+++| ++|++++|
T Consensus       223 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L-~~L~l~~~  282 (336)
T 2ast_B          223 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL-KTLQVFGI  282 (336)
T ss_dssp             TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTC-CEEECTTS
T ss_pred             CCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCC-CEEeccCc
Confidence            45555555544 333334444444555555555442 222222234444444 44554443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.87  E-value=4e-21  Score=160.91  Aligned_cols=232  Identities=28%  Similarity=0.352  Sum_probs=136.1

Q ss_pred             CCCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEecccc
Q 048125            1 DFDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNH   80 (258)
Q Consensus         1 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~   80 (258)
                      +|++++|.++ .+|. +. ++++|++|++.+|.+++ +|..   ..+|++|++++|.+...+ .+..+++|++|++++|.
T Consensus       135 ~L~L~~n~l~-~lp~-~~-~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~  206 (454)
T 1jl5_A          135 YLGVSNNQLE-KLPE-LQ-NSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS  206 (454)
T ss_dssp             EEECCSSCCS-SCCC-CT-TCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC
T ss_pred             EEECcCCCCC-CCcc-cC-CCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc
Confidence            3678889998 5883 44 69999999999998875 4433   258888888888887644 57778888888888887


Q ss_pred             ccCcCCCc-----------cchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCC
Q 048125           81 LGNYGEKD-----------NLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLV  149 (258)
Q Consensus        81 ~~~~~~~~-----------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~  149 (258)
                      ++..+...           .+.....+..+++|++|++++|.+. .+|..    .++++.|++++|.+.. +|..   ++
T Consensus       207 l~~l~~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~N~l~~-l~~~---~~  277 (454)
T 1jl5_A          207 LKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK-TLPDL----PPSLEALNVRDNYLTD-LPEL---PQ  277 (454)
T ss_dssp             CSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS-SCCSC----CTTCCEEECCSSCCSC-CCCC---CT
T ss_pred             CCcCCCCcCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCC-ccccc----ccccCEEECCCCcccc-cCcc---cC
Confidence            76532210           0001113455666777777776665 23321    1356666666665542 2222   24


Q ss_pred             cccEEEeeCCccccc--cCCc-------------ccCc-cCCcEEEecCCccccccCCCCCCCCCcceEecccccccccC
Q 048125          150 NLELLDLSGNQFTSR--IPGS-------------IGDL-QKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSI  213 (258)
Q Consensus       150 ~L~~L~l~~~~~~~~--~~~~-------------~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  213 (258)
                      +|++|++++|.+.+.  .+..             +..+ ++|++|++++|.+.+ +|..   +++|++|++++|.++ .+
T Consensus       278 ~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~l  352 (454)
T 1jl5_A          278 SLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EV  352 (454)
T ss_dssp             TCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CC
T ss_pred             cCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cc
Confidence            555556655555431  1100             0111 366777777776663 4433   467888888888877 45


Q ss_pred             CcccccCcCCcEEeccCCcccc--ccccccccc-------------cCcceeEecCCCCC
Q 048125          214 PSSLGKCQNLIVLDLYNNNLSG--TIPSEVIGL-------------SSLSIYLDLSQNQL  258 (258)
Q Consensus       214 ~~~~~~~~~L~~L~l~~~~l~~--~~~~~~~~~-------------~~l~~~L~l~~n~~  258 (258)
                      |.   .+++|+.|++++|++++  .+|.++..+             +++ ++|++++|++
T Consensus       353 p~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L-~~L~ls~N~l  408 (454)
T 1jl5_A          353 PE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNL-KQLHVETNPL  408 (454)
T ss_dssp             CC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------
T ss_pred             cc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcC-CEEECCCCcC
Confidence            54   36788888888888886  677777666             677 8888888864

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=5.4e-21  Score=148.06  Aligned_cols=180  Identities=21%  Similarity=0.298  Sum_probs=151.7

Q ss_pred             CCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEeccccccCcCCCccchhhhccccCC
Q 048125           22 PNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNAS  100 (258)
Q Consensus        22 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  100 (258)
                      ++.+++++.++.++ .+|..+.  +.++.|++++|.+...... +..+++|++|++++|.++...       ...+..++
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-------~~~~~~l~   83 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS-------AGVFDDLT   83 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-------TTTTTTCT
T ss_pred             CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC-------HhHhccCC
Confidence            46788999999888 4565554  6899999999999887765 889999999999999998633       33577899


Q ss_pred             CCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEe
Q 048125          101 RLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGL  180 (258)
Q Consensus       101 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  180 (258)
                      +|++|++++|.+.+..+..+..+ ++|++|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|++
T Consensus        84 ~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  162 (251)
T 3m19_A           84 ELGTLGLANNQLASLPLGVFDHL-TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL  162 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCEEECCCCcccccChhHhccc-CCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEEC
Confidence            99999999999984443444444 69999999999998656666788999999999999999777778999999999999


Q ss_pred             cCCccccccCCCCCCCCCcceEeccccccccc
Q 048125          181 NGNKFLGEIPSSIGNLTLLMTLNFAENMLEGS  212 (258)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  212 (258)
                      ++|.+.+..+..+..+++|+.|++++|.+...
T Consensus       163 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          163 STNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            99999977777899999999999999999754

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.86  E-value=4.6e-21  Score=155.54  Aligned_cols=236  Identities=17%  Similarity=0.137  Sum_probs=172.0

Q ss_pred             CCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC--ccccCCcce-EEeccc
Q 048125            3 DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS--LENLHKLQR-VIISQN   79 (258)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~l~~L~~-L~l~~~   79 (258)
                      +.++++++ ++|..+   .+++++|++.+|.++.+.+..|.++++|++|++++|.+....+.  |..++++++ +.+.+|
T Consensus        15 ~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N   90 (350)
T 4ay9_X           15 LCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   90 (350)
T ss_dssp             EEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred             EecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence            44567888 899876   45899999999999976667899999999999999998654332  788888876 556668


Q ss_pred             cccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEeccc-ccCCccCccCCCC-CcccEEEee
Q 048125           80 HLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAEN-QLFGNIPSGLRNL-VNLELLDLS  157 (258)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~-~~~~~~~~~~~~~-~~L~~L~l~  157 (258)
                      .++.+.       +..+..+++|++|++++|.+....+...... .++..+++.++ .+....+..|... ..+++|+++
T Consensus        91 ~l~~l~-------~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~  162 (350)
T 4ay9_X           91 NLLYIN-------PEAFQNLPNLQYLLISNTGIKHLPDVHKIHS-LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN  162 (350)
T ss_dssp             TCCEEC-------TTSBCCCTTCCEEEEEEECCSSCCCCTTCCB-SSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECC
T ss_pred             cccccC-------chhhhhccccccccccccccccCCchhhccc-chhhhhhhccccccccccccchhhcchhhhhhccc
Confidence            787532       3467889999999999999874333333333 36777887654 4443334455554 468999999


Q ss_pred             CCccccccCCcccCccCCcEEEecC-CccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccc
Q 048125          158 GNQFTSRIPGSIGDLQKLQMLGLNG-NKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGT  236 (258)
Q Consensus       158 ~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  236 (258)
                      +|.+..+.+..|. .++++++.+.+ |.++...+++|+.+++|+.|++++|.++...+..   +.+|+.|.+.++.-...
T Consensus       163 ~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~  238 (350)
T 4ay9_X          163 KNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKK  238 (350)
T ss_dssp             SSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCC
T ss_pred             cccccCCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCc
Confidence            9999866565554 46799999976 5666444457899999999999999998443333   45667777766533326


Q ss_pred             cccccccccCcceeEecCCC
Q 048125          237 IPSEVIGLSSLSIYLDLSQN  256 (258)
Q Consensus       237 ~~~~~~~~~~l~~~L~l~~n  256 (258)
                      +| .+..+++| ++++++++
T Consensus       239 lP-~l~~l~~L-~~l~l~~~  256 (350)
T 4ay9_X          239 LP-TLEKLVAL-MEASLTYP  256 (350)
T ss_dssp             CC-CTTTCCSC-CEEECSCH
T ss_pred             CC-CchhCcCh-hhCcCCCC
Confidence            66 47788889 99998753

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=7.7e-24  Score=174.14  Aligned_cols=232  Identities=19%  Similarity=0.240  Sum_probs=175.9

Q ss_pred             CCCCcCcccCCCCcch---hccCCCCceEEecCCcc---cccccccc-------cCCCCCcEEEeecccCCCC-----CC
Q 048125            2 FDFPFNQLQGSLPSDL---GFTLPNLEGLNLAGNQF---TGPIPVSI-------SNASNLRELMIGKNGFSGK-----VP   63 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~---~~~~~~~~-------~~~~~L~~L~l~~~~~~~~-----~~   63 (258)
                      |++++|.+++..+..+   ..++++|++|++.+|.+   ++..|..+       ..+++|++|++++|.+...     +.
T Consensus        37 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~  116 (386)
T 2ca6_A           37 IVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLID  116 (386)
T ss_dssp             EECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHH
T ss_pred             EECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHH
Confidence            6788888886544432   23599999999998744   33444444       6889999999999998762     22


Q ss_pred             CccccCCcceEEeccccccCcCCCccchhhhccccC---------CCCcEEEeecccccc-ccc---ccccccccccceE
Q 048125           64 SLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNA---------SRLELLQISDNNFGG-MLP---EAVGNFSTRLGIL  130 (258)
Q Consensus        64 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~---------~~L~~L~l~~~~~~~-~~~---~~~~~~~~~l~~L  130 (258)
                      .+..+++|++|++++|.++..+..   .+...+..+         ++|++|++++|.+.. .++   ..+... ++|+.|
T Consensus       117 ~l~~~~~L~~L~L~~n~l~~~~~~---~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L  192 (386)
T 2ca6_A          117 FLSKHTPLEHLYLHNNGLGPQAGA---KIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH-RLLHTV  192 (386)
T ss_dssp             HHHHCTTCCEEECCSSCCHHHHHH---HHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC-TTCCEE
T ss_pred             HHHhCCCCCEEECcCCCCCHHHHH---HHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC-CCcCEE
Confidence            367889999999999988653222   233344445         899999999998863 333   233333 589999


Q ss_pred             EecccccCCc-----cCccCCCCCcccEEEeeCCccc----cccCCcccCccCCcEEEecCCccccc----cCCCC--CC
Q 048125          131 SVAENQLFGN-----IPSGLRNLVNLELLDLSGNQFT----SRIPGSIGDLQKLQMLGLNGNKFLGE----IPSSI--GN  195 (258)
Q Consensus       131 ~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~--~~  195 (258)
                      ++++|.+...     .+..+..+++|++|++++|.+.    ...+..+..+++|++|++++|.+.+.    ++..+  ..
T Consensus       193 ~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~  272 (386)
T 2ca6_A          193 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE  272 (386)
T ss_dssp             ECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCS
T ss_pred             ECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhcc
Confidence            9999987632     3336778899999999999985    35677888999999999999998764    45555  34


Q ss_pred             CCCcceEecccccccc----cCCccc-ccCcCCcEEeccCCcccccc
Q 048125          196 LTLLMTLNFAENMLEG----SIPSSL-GKCQNLIVLDLYNNNLSGTI  237 (258)
Q Consensus       196 ~~~L~~L~l~~n~~~~----~~~~~~-~~~~~L~~L~l~~~~l~~~~  237 (258)
                      +++|++|++++|.+.+    .++..+ ..+++|+.|++++|.+++..
T Consensus       273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            8999999999999986    377666 55899999999999999655

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.85  E-value=7.1e-23  Score=166.96  Aligned_cols=233  Identities=18%  Similarity=0.230  Sum_probs=173.4

Q ss_pred             CCCCCcCcccCCCCc---chhccCC-CCceEEecCCcccccccccccCC-----CCCcEEEeecccCCCCCCC-----cc
Q 048125            1 DFDFPFNQLQGSLPS---DLGFTLP-NLEGLNLAGNQFTGPIPVSISNA-----SNLRELMIGKNGFSGKVPS-----LE   66 (258)
Q Consensus         1 ~l~~~~~~~~~~~~~---~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~-----~~   66 (258)
                      +|++++|.+++..+.   ..+.+++ +|++|++++|.+++..+..+..+     ++|++|++++|.+......     +.
T Consensus        26 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~  105 (362)
T 3goz_A           26 SLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLA  105 (362)
T ss_dssp             EEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHH
T ss_pred             EEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHH
Confidence            378899999954441   3334588 89999999999998777777664     9999999999999765544     34


Q ss_pred             cc-CCcceEEeccccccCcCCCccchhhhccccC-CCCcEEEeeccccccccc----ccccccccccceEEecccccCCc
Q 048125           67 NL-HKLQRVIISQNHLGNYGEKDNLEFVNSLVNA-SRLELLQISDNNFGGMLP----EAVGNFSTRLGILSVAENQLFGN  140 (258)
Q Consensus        67 ~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~----~~~~~~~~~l~~L~l~~~~~~~~  140 (258)
                      .+ ++|++|++++|.++..+..   .+...+..+ ++|++|++++|.+.+...    ..+....++++.|++++|.+...
T Consensus       106 ~~~~~L~~L~Ls~N~l~~~~~~---~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~  182 (362)
T 3goz_A          106 AIPFTITVLDLGWNDFSSKSSS---EFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK  182 (362)
T ss_dssp             TSCTTCCEEECCSSCGGGSCHH---HHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred             hCCCCccEEECcCCcCCcHHHH---HHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchh
Confidence            44 7999999999999875443   334445553 699999999998875433    33333334899999999988755


Q ss_pred             cCc----cCCCC-CcccEEEeeCCccccc----cCCcccC-ccCCcEEEecCCcccccc----CCCCCCCCCcceEeccc
Q 048125          141 IPS----GLRNL-VNLELLDLSGNQFTSR----IPGSIGD-LQKLQMLGLNGNKFLGEI----PSSIGNLTLLMTLNFAE  206 (258)
Q Consensus       141 ~~~----~~~~~-~~L~~L~l~~~~~~~~----~~~~~~~-~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~  206 (258)
                      .+.    .+... ++|++|++++|.+...    .+..+.. .++|++|++++|.+.+..    ...+..+++|++|++++
T Consensus       183 ~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~  262 (362)
T 3goz_A          183 NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDY  262 (362)
T ss_dssp             CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEH
T ss_pred             hHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEecc
Confidence            443    33444 5999999999999852    3444444 459999999999987532    24567889999999999


Q ss_pred             ccccc-------cCCcccccCcCCcEEeccCCccccc
Q 048125          207 NMLEG-------SIPSSLGKCQNLIVLDLYNNNLSGT  236 (258)
Q Consensus       207 n~~~~-------~~~~~~~~~~~L~~L~l~~~~l~~~  236 (258)
                      |.+.+       .++..+..+++|+.+++++|++.+.
T Consensus       263 n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          263 DIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             CCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            99542       2334566788999999999999855

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.84  E-value=3.3e-20  Score=160.22  Aligned_cols=210  Identities=30%  Similarity=0.353  Sum_probs=139.3

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCc----------------
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSL----------------   65 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----------------   65 (258)
                      |++++|.++ .+|.    .+++|++|++++|.++. +|.   .+++|++|++++|.+...+..+                
T Consensus        66 L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~l~~l  136 (622)
T 3g06_A           66 LVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSL  136 (622)
T ss_dssp             EEECSCCCS-CCCC----CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCCCCCCCTTCCEEECCSSCCSCC
T ss_pred             EEecCCCCC-CCCC----cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCCCCCCCCCcCEEECCCCCCCcC
Confidence            456666666 5665    25667777777666653 332   3455566666555554332210                


Q ss_pred             -cccCCcceEEeccccccCcCCCccchhhhcc--------------ccCCCCcEEEeecccccccccccccccccccceE
Q 048125           66 -ENLHKLQRVIISQNHLGNYGEKDNLEFVNSL--------------VNASRLELLQISDNNFGGMLPEAVGNFSTRLGIL  130 (258)
Q Consensus        66 -~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~--------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L  130 (258)
                       ..+++|++|++++|.++..+..     +..+              ..+++|+.|++++|.+. .+|..    .++++.|
T Consensus       137 p~~l~~L~~L~Ls~N~l~~l~~~-----~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~-~l~~~----~~~L~~L  206 (622)
T 3g06_A          137 PVLPPGLQELSVSDNQLASLPAL-----PSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLA-SLPTL----PSELYKL  206 (622)
T ss_dssp             CCCCTTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCCCC----CTTCCEE
T ss_pred             CCCCCCCCEEECcCCcCCCcCCc-----cCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCC-CCCCc----cchhhEE
Confidence             0125666666666666543211     1111              12266677777777665 33321    2467777


Q ss_pred             EecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEeccccccc
Q 048125          131 SVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLE  210 (258)
Q Consensus       131 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  210 (258)
                      ++++|.+. .++.   .+++|++|++++|.+.+ .|   ..+++|++|++++|.++ .+|.   .+++|+.|++++|.+.
T Consensus       207 ~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~  274 (622)
T 3g06_A          207 WAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT  274 (622)
T ss_dssp             ECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC
T ss_pred             ECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC
Confidence            77777665 3333   24789999999999985 44   45689999999999998 5665   6789999999999999


Q ss_pred             ccCCcccccCcCCcEEeccCCcccccccccccc
Q 048125          211 GSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIG  243 (258)
Q Consensus       211 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~  243 (258)
                       .+|..+..+++|+.|++++|.+++..+..+..
T Consensus       275 -~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~  306 (622)
T 3g06_A          275 -RLPESLIHLSSETTVNLEGNPLSERTLQALRE  306 (622)
T ss_dssp             -SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred             -cCCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence             77888999999999999999999777665543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=7.4e-20  Score=137.66  Aligned_cols=180  Identities=22%  Similarity=0.229  Sum_probs=110.5

Q ss_pred             ceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEeccccccCcCCCccchhhhccccCCCCc
Q 048125           25 EGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLE  103 (258)
Q Consensus        25 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~  103 (258)
                      +.+++.++.++. +|..+  .++|++|++++|.+...... +..+++|++|++++|.++....       ..+..+++|+
T Consensus        10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------~~~~~l~~L~   79 (208)
T 2o6s_A           10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPN-------GVFNKLTSLT   79 (208)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT-------TTTTTCTTCC
T ss_pred             CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccCh-------hhcCCCCCcC
Confidence            456666666653 34333  35788888888887765554 5677778888888777764321       2345667777


Q ss_pred             EEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCC
Q 048125          104 LLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGN  183 (258)
Q Consensus       104 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  183 (258)
                      +|++++|.+. .++.......++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus        80 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A           80 YLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             EEECCCCcCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence            7777777766 333332222246777777776665444444566666777777776666555555666666777776666


Q ss_pred             ccccccCCCCCCCCCcceEecccccccccCCcccccCcC
Q 048125          184 KFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQN  222 (258)
Q Consensus       184 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  222 (258)
                      .+.       ..+++|+.|++..|.+.+.+|..++.++.
T Consensus       159 ~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          159 PWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             CBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             Cee-------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence            543       23456666666666666666666555433

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.83  E-value=9.6e-20  Score=138.18  Aligned_cols=134  Identities=22%  Similarity=0.275  Sum_probs=68.9

Q ss_pred             CCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEE
Q 048125          100 SRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLG  179 (258)
Q Consensus       100 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  179 (258)
                      ++++.|++++|.+.+..+..+..+ ++|+.|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l-~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~  110 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPY-KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL  110 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTC-TTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCC-CCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence            345555555555542222222222 3555555555555444445555555555555555555544444455555555555


Q ss_pred             ecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccc
Q 048125          180 LNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLS  234 (258)
Q Consensus       180 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~  234 (258)
                      +++|.+.+..+..|..+++|+.|++++|.+.+..+..+..+++|+.+++++|.+.
T Consensus       111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            5555555444455555555555555555555444444555555555555555544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=2.9e-19  Score=134.37  Aligned_cols=181  Identities=21%  Similarity=0.217  Sum_probs=113.0

Q ss_pred             cEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccc
Q 048125           49 RELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLG  128 (258)
Q Consensus        49 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~  128 (258)
                      +.++.+++.+...+..+  .++|++|++++|.++....       ..+..+++|++|++++|.+. .++...+...++|+
T Consensus        10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~-------~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~   79 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPN-------GVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLT   79 (208)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCT-------TTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred             CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCCh-------hhhcccccCcEEECCCCccC-ccChhhcCCCCCcC
Confidence            34555555555444332  3467777777777664321       23556677777777777666 33333322234677


Q ss_pred             eEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEeccccc
Q 048125          129 ILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENM  208 (258)
Q Consensus       129 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~  208 (258)
                      +|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus        80 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A           80 YLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             EEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence            77777776664444456667777777777777765555556677777777777777765544556677777777777776


Q ss_pred             ccccCCcccccCcCCcEEeccCCccccccccccccccC
Q 048125          209 LEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSS  246 (258)
Q Consensus       209 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~  246 (258)
                      +.       +.+++|++++++.|++++.+|..+..++.
T Consensus       160 ~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          160 WD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             BC-------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             ee-------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence            54       34556677777777777777766655543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.82  E-value=8.1e-20  Score=138.57  Aligned_cols=155  Identities=16%  Similarity=0.179  Sum_probs=99.1

Q ss_pred             cceEEeccccccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCc
Q 048125           71 LQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVN  150 (258)
Q Consensus        71 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~  150 (258)
                      -+.++++++.++.++.        .+  .+.+++|++++|.+.+..+...+...++|+.|++++|.+....+..|..+++
T Consensus        13 ~~~l~~s~n~l~~iP~--------~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~   82 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPE--------HI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG   82 (220)
T ss_dssp             TTEEECCSSCCSSCCS--------CC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             CCEeEeCCCCcccCcc--------CC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCC
Confidence            3566777766654321        11  2345677777777664433333223346777777777666444556666777


Q ss_pred             ccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccC
Q 048125          151 LELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYN  230 (258)
Q Consensus       151 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  230 (258)
                      |++|++++|.+....+..|..+++|++|++++|.+.+..|..|..+++|+.|++++|.+.+..|..+..+++|+.|++++
T Consensus        83 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  162 (220)
T 2v70_A           83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA  162 (220)
T ss_dssp             CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence            77777777777655566667777777777777777666566677777777777777777666566666777777777777


Q ss_pred             Ccccc
Q 048125          231 NNLSG  235 (258)
Q Consensus       231 ~~l~~  235 (258)
                      |.+..
T Consensus       163 N~l~c  167 (220)
T 2v70_A          163 NPFNC  167 (220)
T ss_dssp             CCEEC
T ss_pred             cCCcC
Confidence            77663

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=3.2e-19  Score=152.44  Aligned_cols=188  Identities=23%  Similarity=0.319  Sum_probs=146.9

Q ss_pred             CCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCCCC
Q 048125           23 NLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRL  102 (258)
Q Consensus        23 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L  102 (258)
                      +|+.|++.++.+++ +|..+  .++|+.|++++|.+..++   ..+++|+.|++++|.++.++.         +..  +|
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~---------l~~--~L  122 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE---------LPA--SL  122 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC---------CCT--TC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch---------hhc--CC
Confidence            89999999998886 55555  378999999999988655   457899999999998875321         222  89


Q ss_pred             cEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecC
Q 048125          103 ELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNG  182 (258)
Q Consensus       103 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  182 (258)
                      ++|++++|.+.+ +|.    .+++|+.|++++|.+.. +|.   .+++|++|++++|.+.+ .|. +.  ++|++|++++
T Consensus       123 ~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~  189 (571)
T 3cvr_A          123 KHLDVDNNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVST  189 (571)
T ss_dssp             CEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCS
T ss_pred             CEEECCCCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcC
Confidence            999999998884 565    23689999999998874 554   46789999999999885 555 55  7899999999


Q ss_pred             CccccccCCCCCCCCCc-------ceEecccccccccCCcccccCcCCcEEeccCCcccccccccccccc
Q 048125          183 NKFLGEIPSSIGNLTLL-------MTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLS  245 (258)
Q Consensus       183 ~~~~~~~~~~~~~~~~L-------~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~  245 (258)
                      |.++ .+|. +..  +|       +.|++++|.++ .+|..+..+++|+.|++++|.+++.+|..+..+.
T Consensus       190 N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          190 NLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             SCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             CCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            9988 6666 543  67       99999999998 6788788899999999999999887777666543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=9.3e-19  Score=149.57  Aligned_cols=177  Identities=27%  Similarity=0.383  Sum_probs=147.6

Q ss_pred             CCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeeccccccccccccccccc
Q 048125           46 SNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFST  125 (258)
Q Consensus        46 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  125 (258)
                      .+++.|++++|.+...+..+  +++|++|++++|.++.++           ..+++|++|++++|.+.+ +|. +.   .
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip-----------~~l~~L~~L~Ls~N~l~~-ip~-l~---~  120 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP-----------ELPASLEYLDACDNRLST-LPE-LP---A  120 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC-----------CCCTTCCEEECCSSCCSC-CCC-CC---T
T ss_pred             CCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc-----------cccCCCCEEEccCCCCCC-cch-hh---c
Confidence            38999999999998765544  378999999999988532           346899999999999984 666 43   2


Q ss_pred             ccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecc
Q 048125          126 RLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFA  205 (258)
Q Consensus       126 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  205 (258)
                      +|+.|++++|.+.. +|.   .+++|++|++++|.+.+ .|.   .+++|++|++++|.+++ +|. +.  ++|+.|+++
T Consensus       121 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls  188 (571)
T 3cvr_A          121 SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVS  188 (571)
T ss_dssp             TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECC
T ss_pred             CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECc
Confidence            89999999999874 555   57899999999999985 454   57899999999999985 676 65  999999999


Q ss_pred             cccccccCCcccccCcCC-------cEEeccCCccccccccccccccCcceeEecCCCCC
Q 048125          206 ENMLEGSIPSSLGKCQNL-------IVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       206 ~n~~~~~~~~~~~~~~~L-------~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~  258 (258)
                      +|.++ .+|. +..  +|       +.|++++|+|+ .+|..+..++++ ++|+|++|++
T Consensus       189 ~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L-~~L~L~~N~l  242 (571)
T 3cvr_A          189 TNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPT-CTIILEDNPL  242 (571)
T ss_dssp             SSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTT-EEEECCSSSC
T ss_pred             CCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCC-CEEEeeCCcC
Confidence            99998 5666 554  77       99999999999 789989999999 9999999986

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.81  E-value=5.2e-19  Score=134.99  Aligned_cols=133  Identities=26%  Similarity=0.307  Sum_probs=78.0

Q ss_pred             CCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEE
Q 048125          100 SRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLG  179 (258)
Q Consensus       100 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  179 (258)
                      ++|++|++++|.+.+..+..+..+ ++|+.|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|+
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  118 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSL-INLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF  118 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEEcCCCccCccCHHHhhCc-cCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence            556666666666654434444333 3566666666665533334455566666666666666654455556666666666


Q ss_pred             ecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccc
Q 048125          180 LNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLS  234 (258)
Q Consensus       180 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~  234 (258)
                      +++|.+. .+|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus       119 Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          119 MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             ccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            6666665 45555566666666666666665444445555666666666666655

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.80  E-value=4.8e-19  Score=140.01  Aligned_cols=171  Identities=22%  Similarity=0.348  Sum_probs=117.8

Q ss_pred             cCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccC
Q 048125           20 TLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNA   99 (258)
Q Consensus        20 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~   99 (258)
                      .+++|++|++.+|.+... + .+..+++|++|++++|.+..... +..+++|++|++++|.++..         ..+..+
T Consensus        44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~---------~~l~~l  111 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDL---------SSLKDL  111 (291)
T ss_dssp             HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCG---------GGGTTC
T ss_pred             hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCC---------hhhccC
Confidence            467788888887777643 2 46677788888888887776554 77777888888888777542         246677


Q ss_pred             CCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEE
Q 048125          100 SRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLG  179 (258)
Q Consensus       100 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  179 (258)
                      ++|++|++++|.+.+ + ..+..+ ++|+.|++++|.+...  ..+..+++|++|++++|.+.+..+  +..+++|++|+
T Consensus       112 ~~L~~L~L~~n~i~~-~-~~l~~l-~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~  184 (291)
T 1h6t_A          112 KKLKSLSLEHNGISD-I-NGLVHL-PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLY  184 (291)
T ss_dssp             TTCCEEECTTSCCCC-C-GGGGGC-TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCCC-C-hhhcCC-CCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEE
Confidence            778888888777763 3 233433 4677777777776533  456667777777777777764433  67777777777


Q ss_pred             ecCCccccccCCCCCCCCCcceEecccccccc
Q 048125          180 LNGNKFLGEIPSSIGNLTLLMTLNFAENMLEG  211 (258)
Q Consensus       180 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  211 (258)
                      +++|.+.+ ++ .+..+++|+.|++++|.+.+
T Consensus       185 L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          185 LSKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             CCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence            77777763 33 36777777777777777763

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=3.4e-18  Score=138.67  Aligned_cols=216  Identities=20%  Similarity=0.148  Sum_probs=159.6

Q ss_pred             ceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEeccccccCcCCCccchhhhccccCCCCc
Q 048125           25 EGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLE  103 (258)
Q Consensus        25 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~  103 (258)
                      +++++++++++ .+|..+  .+++++|++++|.+...... |.++++|++|++++|.+.....      ...+..+++++
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~------~~~f~~L~~l~   82 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE------ADVFSNLPKLH   82 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEEC------TTSBCSCTTCC
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccC------hhHhhcchhhh
Confidence            67888888888 566655  36899999999999887765 8999999999999998754211      12567788877


Q ss_pred             E-EEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCC-ccccccCCcccCcc-CCcEEEe
Q 048125          104 L-LQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGN-QFTSRIPGSIGDLQ-KLQMLGL  180 (258)
Q Consensus       104 ~-L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~-~L~~L~l  180 (258)
                      . +.+..|.+. .++...+...++|++|++++|.+....+..+....++..+++.++ .+....+..|..+. .++.|++
T Consensus        83 ~~l~~~~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L  161 (350)
T 4ay9_X           83 EIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL  161 (350)
T ss_dssp             EEEEEEETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC
T ss_pred             hhhcccCCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcc
Confidence            6 555667777 444444344469999999999987555555666678889999764 67666666777764 6899999


Q ss_pred             cCCccccccCCCCCCCCCcceEeccc-ccccccCCcccccCcCCcEEeccCCccccccc-cccccccCcceeEec
Q 048125          181 NGNKFLGEIPSSIGNLTLLMTLNFAE-NMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIP-SEVIGLSSLSIYLDL  253 (258)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~l~~~L~l  253 (258)
                      ++|.+++ ++.......+|+++++.+ |.+....+..+..+++|+.|++++|+|+ .+| ..+..++.| +.++.
T Consensus       162 ~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~~~~L~~L-~~l~~  233 (350)
T 4ay9_X          162 NKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKL-RARST  233 (350)
T ss_dssp             CSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSSSCTTCCEE-ECTTC
T ss_pred             ccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChhhhccchHh-hhccC
Confidence            9999984 444444567899999985 6666444456789999999999999999 455 456555555 44443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.79  E-value=5.1e-19  Score=139.83  Aligned_cols=189  Identities=23%  Similarity=0.354  Sum_probs=145.5

Q ss_pred             CceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCCCCc
Q 048125           24 LEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLE  103 (258)
Q Consensus        24 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~  103 (258)
                      +..+.+....+++..  .+..+++|+.|++++|.+... +.+..+++|++|++++|.++..        . .+..+++|+
T Consensus        26 ~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~~~~~l~~L~~L~L~~n~l~~~--------~-~l~~l~~L~   93 (291)
T 1h6t_A           26 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDI--------K-PLANLKNLG   93 (291)
T ss_dssp             HHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCC--------G-GGTTCTTCC
T ss_pred             HHHHHhcCCCccccc--chhhcCcccEEEccCCCcccC-hhHhcCCCCCEEEccCCccCCC--------c-ccccCCCCC
Confidence            333445555554322  345688899999999988765 3478889999999999988753        2 277889999


Q ss_pred             EEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCC
Q 048125          104 LLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGN  183 (258)
Q Consensus       104 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  183 (258)
                      +|++++|.+. .++. +..+ ++|+.|++++|.+...  ..+..+++|++|++++|.+.+.  ..+..+++|++|++++|
T Consensus        94 ~L~l~~n~l~-~~~~-l~~l-~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N  166 (291)
T 1h6t_A           94 WLFLDENKVK-DLSS-LKDL-KKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN  166 (291)
T ss_dssp             EEECCSSCCC-CGGG-GTTC-TTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS
T ss_pred             EEECCCCcCC-CChh-hccC-CCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCC
Confidence            9999999887 3433 4444 5899999999987643  4567788999999999988854  56788899999999999


Q ss_pred             ccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCcccc
Q 048125          184 KFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSG  235 (258)
Q Consensus       184 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~  235 (258)
                      .+.+..+  +..+++|+.|++++|.+.+ ++ .+..+++|+.|++++|++..
T Consensus       167 ~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          167 QISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             ccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence            9885444  8888999999999999884 44 37889999999999998873

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.79  E-value=6.3e-19  Score=143.53  Aligned_cols=176  Identities=24%  Similarity=0.177  Sum_probs=85.6

Q ss_pred             cEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccc-cCCCCcEEEeeccccccccccccccccccc
Q 048125           49 RELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLV-NASRLELLQISDNNFGGMLPEAVGNFSTRL  127 (258)
Q Consensus        49 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l  127 (258)
                      +.++++++.+..++..+.  ..++.|++++|.++....       ..+. .+++|+.|++++|.+.+..+..+..+ ++|
T Consensus        21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~-------~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l-~~L   90 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRA-------EWTPTRLTNLHSLLLSHNHLNFISSEAFVPV-PNL   90 (361)
T ss_dssp             TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECT-------TSSSSCCTTCCEEECCSSCCCEECTTTTTTC-TTC
T ss_pred             CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccCh-------hhhhhcccccCEEECCCCcCCccChhhccCC-CCC
Confidence            456666666655444332  346666666666654221       1233 45566666666665553222223332 355


Q ss_pred             ceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCC---CCCCCcceEec
Q 048125          128 GILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSI---GNLTLLMTLNF  204 (258)
Q Consensus       128 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l  204 (258)
                      +.|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++|++++|.+.+..+..|   ..+++|+.|++
T Consensus        91 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L  170 (361)
T 2xot_A           91 RYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDL  170 (361)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEEC
T ss_pred             CEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEEC
Confidence            555555555543333444555555555555555554445555555555555555555553222222   33455555555


Q ss_pred             ccccccccCCcccccCcC--CcEEeccCCccc
Q 048125          205 AENMLEGSIPSSLGKCQN--LIVLDLYNNNLS  234 (258)
Q Consensus       205 ~~n~~~~~~~~~~~~~~~--L~~L~l~~~~l~  234 (258)
                      ++|.+....+..+..++.  ++.|++++|.+.
T Consensus       171 ~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          171 SSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            555555333333444443  244555555444

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.79  E-value=8.6e-19  Score=130.69  Aligned_cols=150  Identities=17%  Similarity=0.198  Sum_probs=83.7

Q ss_pred             CCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEE
Q 048125           99 ASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQML  178 (258)
Q Consensus        99 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  178 (258)
                      +++|+.|++++|.+. .++ .+..+ +++++|++++|.+.  .+..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus        43 l~~L~~L~l~~n~i~-~l~-~l~~l-~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           43 MNSLTYITLANINVT-DLT-GIEYA-HNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHTCCEEEEESSCCS-CCT-TGGGC-TTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             cCCccEEeccCCCcc-ChH-HHhcC-CCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            344555555555444 333 22222 35555555555332  12234555666666666666654455556666666666


Q ss_pred             EecCCccccccCCCCCCCCCcceEeccccc-ccccCCcccccCcCCcEEeccCCccccccccccccccCcceeEecCCCC
Q 048125          179 GLNGNKFLGEIPSSIGNLTLLMTLNFAENM-LEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQ  257 (258)
Q Consensus       179 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~  257 (258)
                      ++++|.+.+..+..+..+++|++|++++|. +. .++ .+..+++|+.|++++|++++ ++ .+..++.+ ++|++++|+
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L-~~L~l~~N~  192 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKL-NQLYAFSQT  192 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSC-CEEEECBC-
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCC-CEEEeeCcc
Confidence            666666665455556666666666666665 44 333 45666666666666666663 33 55666666 666666665


Q ss_pred             C
Q 048125          258 L  258 (258)
Q Consensus       258 ~  258 (258)
                      |
T Consensus       193 i  193 (197)
T 4ezg_A          193 I  193 (197)
T ss_dssp             -
T ss_pred             c
Confidence            4

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.78  E-value=1.8e-18  Score=149.20  Aligned_cols=172  Identities=22%  Similarity=0.346  Sum_probs=126.8

Q ss_pred             cCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccC
Q 048125           20 TLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNA   99 (258)
Q Consensus        20 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~   99 (258)
                      .+++|+.|++.+|.+... + .+..+++|+.|++++|.+....+ +..+++|+.|++++|.+...         ..+..+
T Consensus        41 ~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l---------~~l~~l  108 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDL---------SSLKDL  108 (605)
T ss_dssp             HHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCC---------TTSTTC
T ss_pred             cCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCC---------hhhccC
Confidence            477888888888877643 3 57778888888888888776554 77888888888888877642         256677


Q ss_pred             CCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEE
Q 048125          100 SRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLG  179 (258)
Q Consensus       100 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  179 (258)
                      ++|+.|++++|.+.+ ++ .+..+ ++|+.|++++|.+...  ..+..+++|++|++++|.+.+..+  +..+++|+.|+
T Consensus       109 ~~L~~L~Ls~N~l~~-l~-~l~~l-~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~  181 (605)
T 1m9s_A          109 KKLKSLSLEHNGISD-IN-GLVHL-PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLY  181 (605)
T ss_dssp             TTCCEEECTTSCCCC-CG-GGGGC-TTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             CCCCEEEecCCCCCC-Cc-cccCC-CccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEE
Confidence            888888888887763 33 34444 5788888888877643  556777888888888888875444  77788888888


Q ss_pred             ecCCccccccCCCCCCCCCcceEeccccccccc
Q 048125          180 LNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGS  212 (258)
Q Consensus       180 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  212 (258)
                      +++|.+.+ + ..+..+++|+.|++++|.+.+.
T Consensus       182 Ls~N~i~~-l-~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          182 LSKNHISD-L-RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CCSSCCCB-C-GGGTTCTTCSEEECCSEEEECC
T ss_pred             CcCCCCCC-C-hHHccCCCCCEEEccCCcCcCC
Confidence            88888774 3 3577788888888888887643

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.78  E-value=4.5e-18  Score=128.97  Aligned_cols=154  Identities=16%  Similarity=0.174  Sum_probs=126.5

Q ss_pred             cEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccc
Q 048125           49 RELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLG  128 (258)
Q Consensus        49 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~  128 (258)
                      +.++++++.+..++..+  ...+++|++++|.++....      ...+..+++|++|++++|.+.+..+..+..+ ++|+
T Consensus        14 ~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~------~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l-~~L~   84 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEA------TGIFKKLPQLRKINFSNNKITDIEEGAFEGA-SGVN   84 (220)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECC------CCCGGGCTTCCEEECCSSCCCEECTTTTTTC-TTCC
T ss_pred             CEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCc------hhhhccCCCCCEEECCCCcCCEECHHHhCCC-CCCC
Confidence            58899999888766544  3467899999998875421      1246788999999999999885444455554 5899


Q ss_pred             eEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEeccccc
Q 048125          129 ILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENM  208 (258)
Q Consensus       129 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~  208 (258)
                      +|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|++++|.+++..|..|..+++|++|++++|.
T Consensus        85 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A           85 EILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             EEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             EEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence            99999999886666778889999999999999998778889999999999999999997778899999999999999999


Q ss_pred             ccc
Q 048125          209 LEG  211 (258)
Q Consensus       209 ~~~  211 (258)
                      +..
T Consensus       165 l~c  167 (220)
T 2v70_A          165 FNC  167 (220)
T ss_dssp             EEC
T ss_pred             CcC
Confidence            864

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.78  E-value=8.3e-19  Score=151.27  Aligned_cols=190  Identities=23%  Similarity=0.367  Sum_probs=155.4

Q ss_pred             CceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCCCCc
Q 048125           24 LEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLE  103 (258)
Q Consensus        24 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~  103 (258)
                      +..+.+....+.+..  .+..+++|+.|++++|.+.... .+..+++|+.|++++|.+....         .+..+++|+
T Consensus        23 l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~---------~l~~l~~L~   90 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIK---------PLTNLKNLG   90 (605)
T ss_dssp             HHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCG---------GGGGCTTCC
T ss_pred             HHHHhccCCCccccc--chhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCCh---------hhccCCCCC
Confidence            455566666665433  3567899999999999987654 5889999999999999987532         278899999


Q ss_pred             EEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCC
Q 048125          104 LLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGN  183 (258)
Q Consensus       104 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  183 (258)
                      .|++++|.+. .++ .+..+ ++|+.|++++|.+.. + ..+..+++|++|++++|.+...  ..+..+++|+.|++++|
T Consensus        91 ~L~Ls~N~l~-~l~-~l~~l-~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N  163 (605)
T 1m9s_A           91 WLFLDENKIK-DLS-SLKDL-KKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN  163 (605)
T ss_dssp             EEECCSSCCC-CCT-TSTTC-TTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSS
T ss_pred             EEECcCCCCC-CCh-hhccC-CCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCC
Confidence            9999999887 344 45544 589999999998874 2 4577889999999999999854  57889999999999999


Q ss_pred             ccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccc
Q 048125          184 KFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGT  236 (258)
Q Consensus       184 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  236 (258)
                      .+.+..|  +..+++|+.|++++|.+.+ + ..+..+++|+.|++++|.+.+.
T Consensus       164 ~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          164 QISDIVP--LAGLTKLQNLYLSKNHISD-L-RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CCCCCGG--GTTCTTCCEEECCSSCCCB-C-GGGTTCTTCSEEECCSEEEECC
T ss_pred             cCCCchh--hccCCCCCEEECcCCCCCC-C-hHHccCCCCCEEEccCCcCcCC
Confidence            9986555  8899999999999999985 3 4578899999999999999843

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.77  E-value=3.1e-18  Score=127.69  Aligned_cols=105  Identities=21%  Similarity=0.272  Sum_probs=59.9

Q ss_pred             ccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCc-cccccCCCCCCCCCcceEec
Q 048125          126 RLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNK-FLGEIPSSIGNLTLLMTLNF  204 (258)
Q Consensus       126 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l  204 (258)
                      +++.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|. +. .++ .+..+++|++|++
T Consensus        89 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l  166 (197)
T 4ezg_A           89 NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNI  166 (197)
T ss_dssp             TCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEEC
T ss_pred             CCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEEC
Confidence            44555555544443344445555666666666666654445555666666666666665 44 333 4566666777777


Q ss_pred             ccccccccCCcccccCcCCcEEeccCCccc
Q 048125          205 AENMLEGSIPSSLGKCQNLIVLDLYNNNLS  234 (258)
Q Consensus       205 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~  234 (258)
                      ++|.+.+ ++ .+..+++|+.|++++|+|.
T Consensus       167 ~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          167 QFDGVHD-YR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             TTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred             CCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence            7776663 33 4566677777777777664

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=6.9e-18  Score=127.93  Aligned_cols=152  Identities=20%  Similarity=0.269  Sum_probs=121.9

Q ss_pred             cEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccc
Q 048125           49 RELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLG  128 (258)
Q Consensus        49 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~  128 (258)
                      +.++++++.+..++..+.  ++|++|++++|.++...       ...+..+++|++|++++|.+.+..+..+..+ ++|+
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~-------~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l-~~L~   83 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIP-------PGAFSPYKKLRRIDLSNNQISELAPDAFQGL-RSLN   83 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEEC-------TTSSTTCTTCCEEECCSSCCCEECTTTTTTC-SSCC
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcC-------HhHhhCCCCCCEEECCCCcCCCcCHHHhhCC-cCCC
Confidence            567888888877665543  68899999999887532       2256778899999999998885556666655 5899


Q ss_pred             eEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEeccccc
Q 048125          129 ILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENM  208 (258)
Q Consensus       129 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~  208 (258)
                      +|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++|++++|.+++..+..+..+++|++|++++|+
T Consensus        84 ~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B           84 SLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence            99999998885555567788899999999999987778888889999999999999887666778888999999999998


Q ss_pred             cc
Q 048125          209 LE  210 (258)
Q Consensus       209 ~~  210 (258)
                      +.
T Consensus       164 ~~  165 (220)
T 2v9t_B          164 FI  165 (220)
T ss_dssp             EE
T ss_pred             cC
Confidence            75

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.75  E-value=1.7e-17  Score=135.06  Aligned_cols=179  Identities=26%  Similarity=0.235  Sum_probs=143.7

Q ss_pred             CcceEEeccccccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCC
Q 048125           70 KLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLV  149 (258)
Q Consensus        70 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~  149 (258)
                      .-+.++++++.++.++.        .+  .+.++.|++++|.+.+..+..+....++|+.|++++|.+....+..|..++
T Consensus        19 ~~~~l~c~~~~l~~iP~--------~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~   88 (361)
T 2xot_A           19 ASNILSCSKQQLPNVPQ--------SL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP   88 (361)
T ss_dssp             ETTEEECCSSCCSSCCS--------SC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             CCCEEEeCCCCcCccCc--------cC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCC
Confidence            34788898888875432        22  245899999999998444433431346899999999999866677899999


Q ss_pred             cccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCccc---ccCcCCcEE
Q 048125          150 NLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSL---GKCQNLIVL  226 (258)
Q Consensus       150 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~---~~~~~L~~L  226 (258)
                      +|++|++++|.+....+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..+   ..+++|+.|
T Consensus        89 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L  168 (361)
T 2xot_A           89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLL  168 (361)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEE
T ss_pred             CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEE
Confidence            99999999999997778889999999999999999998878899999999999999999985444444   568999999


Q ss_pred             eccCCccccccccccccccCc-ceeEecCCCCC
Q 048125          227 DLYNNNLSGTIPSEVIGLSSL-SIYLDLSQNQL  258 (258)
Q Consensus       227 ~l~~~~l~~~~~~~~~~~~~l-~~~L~l~~n~~  258 (258)
                      ++++|+|++..+..+..++.+ +++|+|++|++
T Consensus       169 ~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          169 DLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             ECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred             ECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence            999999995444567777763 27899999985

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.75  E-value=1.2e-18  Score=135.60  Aligned_cols=170  Identities=22%  Similarity=0.302  Sum_probs=117.6

Q ss_pred             CCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCC
Q 048125           21 LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNAS  100 (258)
Q Consensus        21 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  100 (258)
                      +.++..+++..+.+++..  .+..+++|++|++++|.+.... .+..+++|++|++++|.++..        . .+..++
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~--------~-~l~~l~   85 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDL--------S-PLKDLT   85 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCC--------G-GGTTCS
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCC--------h-hhccCC
Confidence            344666667777666432  4667777888888877776544 566777788888887777642        1 166777


Q ss_pred             CCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEe
Q 048125          101 RLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGL  180 (258)
Q Consensus       101 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  180 (258)
                      +|++|++++|.+. .++....   ++++.|++++|.+.. + ..+..+++|++|++++|.+.+. + .+..+++|++|++
T Consensus        86 ~L~~L~L~~N~l~-~l~~~~~---~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L  157 (263)
T 1xeu_A           86 KLEELSVNRNRLK-NLNGIPS---ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDL  157 (263)
T ss_dssp             SCCEEECCSSCCS-CCTTCCC---SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEEC
T ss_pred             CCCEEECCCCccC-CcCcccc---CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEEC
Confidence            7888888888776 3333222   477888888877763 2 3466777888888888887743 3 5677788888888


Q ss_pred             cCCccccccCCCCCCCCCcceEeccccccccc
Q 048125          181 NGNKFLGEIPSSIGNLTLLMTLNFAENMLEGS  212 (258)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  212 (258)
                      ++|.+.+.  ..+..+++|+.|++++|.+...
T Consensus       158 ~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          158 HGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             TTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             CCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            88887754  5677788888888888887643

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=4.8e-17  Score=124.06  Aligned_cols=154  Identities=20%  Similarity=0.218  Sum_probs=121.5

Q ss_pred             CCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccc
Q 048125           47 NLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTR  126 (258)
Q Consensus        47 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  126 (258)
                      .-+.++.+++.+..++..+.  ++|++|++++|.++...       +..+..+++|++|++++|.+. .++...+...++
T Consensus        20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~-------~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~   89 (229)
T 3e6j_A           20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLE-------PGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQ   89 (229)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCC-------TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTT
T ss_pred             eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccC-------HHHhhCccCCcEEECCCCCCC-CcChhhcccCCC
Confidence            35678888888776665443  78999999999888632       345778889999999999886 555444334468


Q ss_pred             cceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEeccc
Q 048125          127 LGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAE  206 (258)
Q Consensus       127 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  206 (258)
                      |+.|++++|.+....+..+..+++|++|++++|.+. ..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus        90 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  168 (229)
T 3e6j_A           90 LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG  168 (229)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             cCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence            999999999887555666788899999999999988 5677788889999999999998866566788899999999999


Q ss_pred             ccccc
Q 048125          207 NMLEG  211 (258)
Q Consensus       207 n~~~~  211 (258)
                      |++..
T Consensus       169 N~~~c  173 (229)
T 3e6j_A          169 NPWDC  173 (229)
T ss_dssp             SCBCT
T ss_pred             CCccC
Confidence            98874

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.73  E-value=3.4e-19  Score=154.16  Aligned_cols=247  Identities=15%  Similarity=0.136  Sum_probs=130.9

Q ss_pred             CCCCcCcccC----CCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeec----------------------
Q 048125            2 FDFPFNQLQG----SLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGK----------------------   55 (258)
Q Consensus         2 l~~~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~----------------------   55 (258)
                      |++++|.+++    .++. +..++++|++|++.+|.+.+ .+..+.++++|++|.+++                      
T Consensus       197 L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~  274 (592)
T 3ogk_B          197 LNFYMTEFAKISPKDLET-IARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCR  274 (592)
T ss_dssp             EECTTCCCSSCCHHHHHH-HHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCE
T ss_pred             EEeeccCCCccCHHHHHH-HHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccc
Confidence            4566666651    2222 23357888888888876654 344455555555555543                      


Q ss_pred             -----ccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeeccccccccccccccc-------
Q 048125           56 -----NGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNF-------  123 (258)
Q Consensus        56 -----~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-------  123 (258)
                           +........+..+++|++|++++|.++..      .+...+..+++|++|+++.+ +.......+...       
T Consensus       275 L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~------~~~~~~~~~~~L~~L~L~~~-~~~~~l~~~~~~~~~L~~L  347 (592)
T 3ogk_B          275 LGLSYMGPNEMPILFPFAAQIRKLDLLYALLETE------DHCTLIQKCPNLEVLETRNV-IGDRGLEVLAQYCKQLKRL  347 (592)
T ss_dssp             EEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHH------HHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEE
T ss_pred             cCccccchhHHHHHHhhcCCCcEEecCCCcCCHH------HHHHHHHhCcCCCEEeccCc-cCHHHHHHHHHhCCCCCEE
Confidence                 21111122244566777777777764331      11122344555555555422 211111111111       


Q ss_pred             -----------------------------ccccceEEecccccCCccCccCC-CCCcccEEEee----CCccccc-----
Q 048125          124 -----------------------------STRLGILSVAENQLFGNIPSGLR-NLVNLELLDLS----GNQFTSR-----  164 (258)
Q Consensus       124 -----------------------------~~~l~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~----~~~~~~~-----  164 (258)
                                                   +++|+.|++..+.+.......+. .+++|++|+++    .+.+++.     
T Consensus       348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~  427 (592)
T 3ogk_B          348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG  427 (592)
T ss_dssp             EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred             EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence                                         23444444433333322222222 24566666665    2233321     


Q ss_pred             cCCcccCccCCcEEEecCCc--cccccCCCC-CCCCCcceEecccccccc-cCCcccccCcCCcEEeccCCccccc-ccc
Q 048125          165 IPGSIGDLQKLQMLGLNGNK--FLGEIPSSI-GNLTLLMTLNFAENMLEG-SIPSSLGKCQNLIVLDLYNNNLSGT-IPS  239 (258)
Q Consensus       165 ~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~-~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~-~~~  239 (258)
                      .+..+.++++|++|++++|.  +.+.....+ ..+++|++|++++|.+++ .++..+..+++|+.|++++|.+++. ++.
T Consensus       428 ~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  507 (592)
T 3ogk_B          428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAA  507 (592)
T ss_dssp             HHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHH
T ss_pred             HHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHH
Confidence            11224456777777776543  333222222 347788888888888865 3344557788999999999988744 344


Q ss_pred             ccccccCcceeEecCCCCC
Q 048125          240 EVIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       240 ~~~~~~~l~~~L~l~~n~~  258 (258)
                      ....++++ ++|+|++|++
T Consensus       508 ~~~~l~~L-~~L~ls~n~i  525 (592)
T 3ogk_B          508 AVTKLPSL-RYLWVQGYRA  525 (592)
T ss_dssp             HHHHCSSC-CEEEEESCBC
T ss_pred             HHHhcCcc-CeeECcCCcC
Confidence            44567888 9999998864

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.73  E-value=3.9e-17  Score=121.16  Aligned_cols=131  Identities=22%  Similarity=0.240  Sum_probs=98.3

Q ss_pred             cEEEeecccccccccccccccccccceEEecccccCCccCc-cCCCCCcccEEEeeCCccccccCCcccCccCCcEEEec
Q 048125          103 ELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPS-GLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLN  181 (258)
Q Consensus       103 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  181 (258)
                      +.++++++.+. .+|..+.   ..++.|++++|.+....+. .+..+++|++|++++|.+.+..+..|..+++|++|+++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            67788877775 6665443   3678888888877644443 36777888888888888877667778888888888888


Q ss_pred             CCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCcccccc
Q 048125          182 GNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTI  237 (258)
Q Consensus       182 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~  237 (258)
                      +|.+++..+..|..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence            88887766677778888888888888887777777777888888888888777443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.72  E-value=5.6e-18  Score=131.88  Aligned_cols=171  Identities=22%  Similarity=0.279  Sum_probs=139.9

Q ss_pred             CCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeeccccccccccccccc
Q 048125           44 NASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNF  123 (258)
Q Consensus        44 ~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  123 (258)
                      .+.+++.++++++.+.... .+..+++|++|++++|.++...         .+..+++|+.|++++|.+.+ ++. +..+
T Consensus        17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~---------~l~~l~~L~~L~L~~N~i~~-~~~-l~~l   84 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA---------GMQFFTNLKELHLSHNQISD-LSP-LKDL   84 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT---------TGGGCTTCCEEECCSSCCCC-CGG-GTTC
T ss_pred             HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch---------HHhhCCCCCEEECCCCccCC-Chh-hccC
Confidence            4566778888888887655 5788999999999999887532         56788999999999999884 444 5544


Q ss_pred             ccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEe
Q 048125          124 STRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLN  203 (258)
Q Consensus       124 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  203 (258)
                       ++|+.|++++|.+.. ++... . ++|++|++++|.+.+. + .+..+++|+.|++++|.+++. + .+..+++|+.|+
T Consensus        85 -~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~  156 (263)
T 1xeu_A           85 -TKLEELSVNRNRLKN-LNGIP-S-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLD  156 (263)
T ss_dssp             -SSCCEEECCSSCCSC-CTTCC-C-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEE
T ss_pred             -CCCCEEECCCCccCC-cCccc-c-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEE
Confidence             689999999998874 33322 2 8999999999999853 3 588999999999999999854 3 688899999999


Q ss_pred             cccccccccCCcccccCcCCcEEeccCCccccc
Q 048125          204 FAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGT  236 (258)
Q Consensus       204 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  236 (258)
                      +++|.+.+.  ..+..+++|+.|++++|++.+.
T Consensus       157 L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          157 LHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             CCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            999999855  6678899999999999999843

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.72  E-value=2.3e-20  Score=159.92  Aligned_cols=204  Identities=21%  Similarity=0.181  Sum_probs=138.5

Q ss_pred             cCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccC-cC-----CCccchhhhccccCCCCcEEE-eeccccccc
Q 048125           43 SNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGN-YG-----EKDNLEFVNSLVNASRLELLQ-ISDNNFGGM  115 (258)
Q Consensus        43 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~-----~~~~~~~~~~~~~~~~L~~L~-l~~~~~~~~  115 (258)
                      ..++.|+.|++++|.+...+..++.+++|++|++.+|.... ..     ....-..+..+..+++|+.|+ ++.+.+. .
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-~  424 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-D  424 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-H
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-h
Confidence            34566666666666665554446666666666665443000 00     000002334455566666666 3443322 1


Q ss_pred             ccc------cccc-cccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccc
Q 048125          116 LPE------AVGN-FSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGE  188 (258)
Q Consensus       116 ~~~------~~~~-~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  188 (258)
                      ++.      .+.. ....++.|++++|.+.. +|. ++.+++|++|++++|.+. ..|..+..+++|+.|++++|.+++ 
T Consensus       425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-  500 (567)
T 1dce_A          425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-  500 (567)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-
T ss_pred             hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-
Confidence            110      0000 01258899999998874 565 888899999999999998 678889999999999999999985 


Q ss_pred             cCCCCCCCCCcceEecccccccccC-CcccccCcCCcEEeccCCcccccccc---ccccccCcceeEec
Q 048125          189 IPSSIGNLTLLMTLNFAENMLEGSI-PSSLGKCQNLIVLDLYNNNLSGTIPS---EVIGLSSLSIYLDL  253 (258)
Q Consensus       189 ~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~---~~~~~~~l~~~L~l  253 (258)
                      +| .+..+++|+.|++++|.+.+.. |..++.+++|+.|++++|.+++..+.   .+..+|.+ ++||+
T Consensus       501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L-~~L~l  567 (567)
T 1dce_A          501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV-SSILT  567 (567)
T ss_dssp             CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTC-SEEEC
T ss_pred             Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCccc-CccCC
Confidence            66 7889999999999999998665 88999999999999999999954442   23347788 88864

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.71  E-value=6.2e-19  Score=152.55  Aligned_cols=157  Identities=13%  Similarity=-0.006  Sum_probs=107.4

Q ss_pred             cccCCCCcEEEeecccccccccccccccccccceEEeccc----ccCCc-----cCccCCCCCcccEEEeeCCc--cccc
Q 048125           96 LVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAEN----QLFGN-----IPSGLRNLVNLELLDLSGNQ--FTSR  164 (258)
Q Consensus        96 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~----~~~~~-----~~~~~~~~~~L~~L~l~~~~--~~~~  164 (258)
                      ...+++|++|+++.+.+++..+..+...+++|+.|++..+    .+...     ++..+..+++|++|+++.|.  +.+.
T Consensus       374 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~  453 (592)
T 3ogk_B          374 AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL  453 (592)
T ss_dssp             HHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH
T ss_pred             HhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH
Confidence            3457888888887777765555555554468999999743    33321     22224568899999998643  4433


Q ss_pred             cCCcc-cCccCCcEEEecCCcccc-ccCCCCCCCCCcceEeccccccccc-CCcccccCcCCcEEeccCCcccccccccc
Q 048125          165 IPGSI-GDLQKLQMLGLNGNKFLG-EIPSSIGNLTLLMTLNFAENMLEGS-IPSSLGKCQNLIVLDLYNNNLSGTIPSEV  241 (258)
Q Consensus       165 ~~~~~-~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~~  241 (258)
                      ....+ ..+++|++|++++|.+++ .++..+..+++|++|++++|.+++. .+.....+++|+.|++++|++++.....+
T Consensus       454 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l  533 (592)
T 3ogk_B          454 GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLM  533 (592)
T ss_dssp             HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGG
T ss_pred             HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHH
Confidence            33333 347899999999999875 3344557789999999999998644 34444678999999999999986543333


Q ss_pred             -ccccCcceeEec
Q 048125          242 -IGLSSLSIYLDL  253 (258)
Q Consensus       242 -~~~~~l~~~L~l  253 (258)
                       ..+|.+ ....+
T Consensus       534 ~~~~p~l-~~~~~  545 (592)
T 3ogk_B          534 QMARPYW-NIELI  545 (592)
T ss_dssp             GGCCTTE-EEEEE
T ss_pred             HHhCCCc-EEEEe
Confidence             345655 44333

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.69  E-value=2.6e-16  Score=116.73  Aligned_cols=127  Identities=23%  Similarity=0.289  Sum_probs=92.0

Q ss_pred             cEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecC
Q 048125          103 ELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNG  182 (258)
Q Consensus       103 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  182 (258)
                      +.++.+++.+. .+|..+.   +.++.|++++|.+. .+|..+..+++|++|++++|.+....+..|..+++|++|++++
T Consensus        13 ~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            56777777666 5555433   46777888777776 5566677777788888888877766667777777888888888


Q ss_pred             CccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccc
Q 048125          183 NKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLS  234 (258)
Q Consensus       183 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~  234 (258)
                      |.+++..+..|..+++|+.|++++|.+....+..+..+++|+.+++++|.+.
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            8777666667777778888888888777555555677777888888877765

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.69  E-value=1.2e-16  Score=128.50  Aligned_cols=227  Identities=14%  Similarity=0.075  Sum_probs=143.8

Q ss_pred             CCCcchhcc--------CCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEeccccc-
Q 048125           12 SLPSDLGFT--------LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNHL-   81 (258)
Q Consensus        12 ~~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~-   81 (258)
                      .+|...+.+        |++|+++.+.+ .++.+...+|.+|.+|+.+++.++.+...... |..+.++..+....... 
T Consensus        83 ~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~  161 (329)
T 3sb4_A           83 FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAY  161 (329)
T ss_dssp             EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHH
T ss_pred             ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhh
Confidence            456666667        88888888887 67766667788888888888888877654444 66655666555443211 


Q ss_pred             ---cCcCCCccchhhhccccCCCCc-EEEeecccccccccccccc---cccccceEEecccccCCccCccCCCCCcccEE
Q 048125           82 ---GNYGEKDNLEFVNSLVNASRLE-LLQISDNNFGGMLPEAVGN---FSTRLGILSVAENQLFGNIPSGLRNLVNLELL  154 (258)
Q Consensus        82 ---~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~---~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L  154 (258)
                         ..+.       ...+..+..|+ .+.+....   .++..++.   .+.++..+.+.+.-...........+++|+++
T Consensus       162 ~~~~~i~-------~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l  231 (329)
T 3sb4_A          162 RFKNRWE-------HFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSL  231 (329)
T ss_dssp             HTSTTTT-------TSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEE
T ss_pred             hcccccc-------ccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEE
Confidence               1111       11344555555 34333221   12221111   11345555554432111111111236788888


Q ss_pred             EeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcc-eEecccccccccCCcccccCcCCcEEeccCCcc
Q 048125          155 DLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLM-TLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNL  233 (258)
Q Consensus       155 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l  233 (258)
                      ++++|.+..+...+|.++++|+.+++.++ ++...+.+|..+++|+ .+++.+ .+....+..|.+|++|+.+++.+|++
T Consensus       232 ~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i  309 (329)
T 3sb4_A          232 DISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKI  309 (329)
T ss_dssp             ECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCC
T ss_pred             ECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCcc
Confidence            88888887777778888888888888876 6656667888888888 888888 66656677888888888888888888


Q ss_pred             ccccccccccccCcceeEe
Q 048125          234 SGTIPSEVIGLSSLSIYLD  252 (258)
Q Consensus       234 ~~~~~~~~~~~~~l~~~L~  252 (258)
                      +...+.+|..+++| +++.
T Consensus       310 ~~I~~~aF~~~~~L-~~ly  327 (329)
T 3sb4_A          310 TTLGDELFGNGVPS-KLIY  327 (329)
T ss_dssp             CEECTTTTCTTCCC-CEEE
T ss_pred             CccchhhhcCCcch-hhhc
Confidence            85556678888888 6653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.69  E-value=6.8e-17  Score=117.26  Aligned_cols=138  Identities=22%  Similarity=0.263  Sum_probs=104.6

Q ss_pred             cCCCCcEEEeeccccc-ccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCc
Q 048125           98 NASRLELLQISDNNFG-GMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQ  176 (258)
Q Consensus        98 ~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  176 (258)
                      ..++|+.|++++|.+. +.+|..+..+ ++++.|++++|.+...  ..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l-~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEF-VNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGG-GGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhC-CCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence            4577889999888876 4566655544 5888888888887644  6677788888888888888765676767788888


Q ss_pred             EEEecCCcccccc-CCCCCCCCCcceEecccccccccCC---cccccCcCCcEEeccCCcccccccc
Q 048125          177 MLGLNGNKFLGEI-PSSIGNLTLLMTLNFAENMLEGSIP---SSLGKCQNLIVLDLYNNNLSGTIPS  239 (258)
Q Consensus       177 ~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~~~~l~~~~~~  239 (258)
                      +|++++|.+.+.. +..+..+++|+.|++++|.+.+..+   ..+..+++|+.|++++|.+. .+|.
T Consensus        99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A           99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            8888888887432 2677888888888888888875444   36778888888888888877 4444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.68  E-value=3.9e-16  Score=115.73  Aligned_cols=132  Identities=22%  Similarity=0.247  Sum_probs=107.4

Q ss_pred             cceEEeccccccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCc
Q 048125           71 LQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVN  150 (258)
Q Consensus        71 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~  150 (258)
                      -+.++++++.++.++.        .+.  ++++.|++++|.+.+..+...+...++|++|++++|.+....+..+..+++
T Consensus        10 ~~~l~~s~~~l~~ip~--------~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   79 (192)
T 1w8a_A           10 GTTVDCTGRGLKEIPR--------DIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH   79 (192)
T ss_dssp             TTEEECTTSCCSSCCS--------CCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred             CCEEEcCCCCcCcCcc--------CCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCccc
Confidence            4788899888875432        222  379999999998874444333333368999999999988777888899999


Q ss_pred             ccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEeccccccccc
Q 048125          151 LELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGS  212 (258)
Q Consensus       151 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  212 (258)
                      |++|++++|.+.+..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.+...
T Consensus        80 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            99999999999988888889999999999999999988888999999999999999998743

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.68  E-value=5.2e-19  Score=153.05  Aligned_cols=183  Identities=17%  Similarity=0.173  Sum_probs=101.9

Q ss_pred             ccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEec-------------
Q 048125           67 NLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVA-------------  133 (258)
Q Consensus        67 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~-------------  133 (258)
                      .+++|++|++++|.+++.      .+...+..+++|+.|++++| +.......+...+++|+.|++.             
T Consensus       287 ~~~~L~~L~L~~~~l~~~------~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l  359 (594)
T 2p1m_B          287 VCSRLTTLNLSYATVQSY------DLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVAL  359 (594)
T ss_dssp             HHTTCCEEECTTCCCCHH------HHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCC
T ss_pred             hhCCCCEEEccCCCCCHH------HHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCC
Confidence            467888999888875531      12223456677777777766 3212112222222355555552             


Q ss_pred             ---------------------ccccCCccCccC-CCCCcccEEEee--C----Cccccc-----cCCcccCccCCcEEEe
Q 048125          134 ---------------------ENQLFGNIPSGL-RNLVNLELLDLS--G----NQFTSR-----IPGSIGDLQKLQMLGL  180 (258)
Q Consensus       134 ---------------------~~~~~~~~~~~~-~~~~~L~~L~l~--~----~~~~~~-----~~~~~~~~~~L~~L~l  180 (258)
                                           .+.+.......+ ..+++|++|+++  +    +.++..     .+..+..+++|+.|++
T Consensus       360 ~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L  439 (594)
T 2p1m_B          360 TEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL  439 (594)
T ss_dssp             CHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEEC
T ss_pred             CHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEee
Confidence                                 222221111111 134566666666  2    233210     1112345566777777


Q ss_pred             cCCccccccCCCCCC-CCCcceEecccccccccCCccc-ccCcCCcEEeccCCcccccccc-ccccccCcceeEecCCCC
Q 048125          181 NGNKFLGEIPSSIGN-LTLLMTLNFAENMLEGSIPSSL-GKCQNLIVLDLYNNNLSGTIPS-EVIGLSSLSIYLDLSQNQ  257 (258)
Q Consensus       181 ~~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~-~~~~~~~l~~~L~l~~n~  257 (258)
                      ++ .+++.....+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++.... ....+++| ++|+|++|+
T Consensus       440 ~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L-~~L~l~~~~  517 (594)
T 2p1m_B          440 SG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETM-RSLWMSSCS  517 (594)
T ss_dssp             CS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGS-SEEEEESSC
T ss_pred             cC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCC-CEEeeeCCC
Confidence            55 443322223332 6788888888888765544444 5688899999999988644433 34457888 999998886


Q ss_pred             C
Q 048125          258 L  258 (258)
Q Consensus       258 ~  258 (258)
                      +
T Consensus       518 ~  518 (594)
T 2p1m_B          518 V  518 (594)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.67  E-value=1.3e-19  Score=155.32  Aligned_cols=177  Identities=20%  Similarity=0.254  Sum_probs=139.1

Q ss_pred             cccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeeccc-------------ccccccccccccccccceEE-
Q 048125           66 ENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNN-------------FGGMLPEAVGNFSTRLGILS-  131 (258)
Q Consensus        66 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~~~~~~~~l~~L~-  131 (258)
                      ...+.|+.|++++|.++        .++..+..+++|+.|+++++.             ..+..|..+..+ ++|+.|+ 
T Consensus       346 ~~~~~L~~L~Ls~n~L~--------~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l-~~L~~L~~  416 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST--------VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF-STLKAVDP  416 (567)
T ss_dssp             STTTTSSSCCCCHHHHH--------HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHH-HHHHHHCG
T ss_pred             ccCccceeccCChhhHH--------hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHH-HhcccCcc
Confidence            56789999999999987        677888899999999986663             222334444443 4677776 


Q ss_pred             ecccccCCccCc------cCC--CCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEe
Q 048125          132 VAENQLFGNIPS------GLR--NLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLN  203 (258)
Q Consensus       132 l~~~~~~~~~~~------~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  203 (258)
                      +..+.+.. ++.      .+.  ....|++|++++|.+.+ .|. +..+++|+.|++++|.++ .+|..++.+++|+.|+
T Consensus       417 l~~n~~~~-L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~  492 (567)
T 1dce_A          417 MRAAYLDD-LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQ  492 (567)
T ss_dssp             GGHHHHHH-HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEE
T ss_pred             hhhcccch-hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEE
Confidence            33332210 000      000  01258999999999985 565 899999999999999999 7899999999999999


Q ss_pred             cccccccccCCcccccCcCCcEEeccCCcccccc-ccccccccCcceeEecCCCCC
Q 048125          204 FAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTI-PSEVIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       204 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~~l~~~L~l~~n~~  258 (258)
                      +++|.+++ +| .++.+++|+.|++++|+|++.. |..+..+++| ++|+|++|++
T Consensus       493 Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L-~~L~L~~N~l  545 (567)
T 1dce_A          493 ASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL-VLLNLQGNSL  545 (567)
T ss_dssp             CCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTC-CEEECTTSGG
T ss_pred             CCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCC-CEEEecCCcC
Confidence            99999995 66 7899999999999999999665 8999999999 9999999975

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.67  E-value=7.6e-16  Score=112.69  Aligned_cols=132  Identities=22%  Similarity=0.208  Sum_probs=101.6

Q ss_pred             CcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEec
Q 048125          102 LELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLN  181 (258)
Q Consensus       102 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  181 (258)
                      .+.++++++.+. .+|..+.   ++++.|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|+++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCc-cCCCCCC---CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            567888887776 5554433   478888888888775555567778888888888888886666677888888888888


Q ss_pred             CCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCcccccc
Q 048125          182 GNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTI  237 (258)
Q Consensus       182 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~  237 (258)
                      +|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.+++++|.+.+..
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            88888666666788888888888888888555555677888888888888887543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.67  E-value=4.2e-16  Score=113.06  Aligned_cols=130  Identities=28%  Similarity=0.308  Sum_probs=80.8

Q ss_pred             cccceEEecccccC-CccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEe
Q 048125          125 TRLGILSVAENQLF-GNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLN  203 (258)
Q Consensus       125 ~~l~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  203 (258)
                      ++++.|++++|.+. ..+|..+..+++|++|++++|.+...  ..+..+++|++|++++|.+.+.+|..+..+++|+.|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            45667777666654 34555556666677777777766643  5566666777777777766654555555566777777


Q ss_pred             cccccccccC-CcccccCcCCcEEeccCCccccccc---cccccccCcceeEecCCCC
Q 048125          204 FAENMLEGSI-PSSLGKCQNLIVLDLYNNNLSGTIP---SEVIGLSSLSIYLDLSQNQ  257 (258)
Q Consensus       204 l~~n~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~~~~l~~~L~l~~n~  257 (258)
                      +++|.+.+.. +..+..+++|+.|++++|.+++..+   ..+..++.+ ++|++++|.
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L-~~L~l~~n~  158 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQL-TYLDGYDRE  158 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSC-CEETTEETT
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccC-cEecCCCCC
Confidence            7777666321 1455666677777777777663322   256666666 777766664

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.66  E-value=9.4e-17  Score=114.16  Aligned_cols=128  Identities=24%  Similarity=0.276  Sum_probs=91.7

Q ss_pred             cccceEEecccccC-CccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEe
Q 048125          125 TRLGILSVAENQLF-GNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLN  203 (258)
Q Consensus       125 ~~l~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  203 (258)
                      ++++.|++++|.+. ..++..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            46777777777665 34566666777788888887777644  5667777888888888887755666666678888888


Q ss_pred             ccccccccc-CCcccccCcCCcEEeccCCccccccc---cccccccCcceeEecCC
Q 048125          204 FAENMLEGS-IPSSLGKCQNLIVLDLYNNNLSGTIP---SEVIGLSSLSIYLDLSQ  255 (258)
Q Consensus       204 l~~n~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~~~~l~~~L~l~~  255 (258)
                      +++|.+.+. .+..+..+++|+.|++++|++++..+   ..+..++++ ++||+++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L-~~L~l~d  149 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQL-TYLDGYD  149 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTC-CEETTBC
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCc-ccccCCC
Confidence            888887742 23667778888888888888874443   367777888 8887763

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.66  E-value=5.2e-15  Score=121.69  Aligned_cols=153  Identities=10%  Similarity=0.114  Sum_probs=92.5

Q ss_pred             ccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccc-----cccCCcc
Q 048125           95 SLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFT-----SRIPGSI  169 (258)
Q Consensus        95 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~  169 (258)
                      .|..+++|+.+.+..+ +. .+....+.. .+++.+.+.. .+......+|..+++|+++.+.++.+.     .+...+|
T Consensus       221 aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF  296 (401)
T 4fdw_A          221 AFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL  296 (401)
T ss_dssp             TTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT
T ss_pred             HhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHh
Confidence            4556666666666653 22 233333333 3566666633 233334556677777777777766543     3556677


Q ss_pred             cCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCcccccccccccccc-Ccc
Q 048125          170 GDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLS-SLS  248 (258)
Q Consensus       170 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~-~l~  248 (258)
                      .++++|+.+.+.. .++.....+|..|++|+.+.+..+ +.......|.+| +|+.+++.+|.+.......|..++ .+ 
T Consensus       297 ~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l-  372 (401)
T 4fdw_A          297 EGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDI-  372 (401)
T ss_dssp             TTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTC-
T ss_pred             hCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCc-
Confidence            7777777777763 455455567777777777777555 444556667777 777777777776644445566664 34 


Q ss_pred             eeEecCC
Q 048125          249 IYLDLSQ  255 (258)
Q Consensus       249 ~~L~l~~  255 (258)
                      ..|.+-.
T Consensus       373 ~~l~vp~  379 (401)
T 4fdw_A          373 TVIRVPA  379 (401)
T ss_dssp             CEEEECG
T ss_pred             cEEEeCH
Confidence            5555543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.65  E-value=1.8e-18  Score=149.72  Aligned_cols=79  Identities=14%  Similarity=0.119  Sum_probs=41.9

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCC-ccccc-ccccccCCCCCcEEEeecccCCCCCCC-----ccccCCcceE
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGN-QFTGP-IPVSISNASNLRELMIGKNGFSGKVPS-----LENLHKLQRV   74 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~-----~~~l~~L~~L   74 (258)
                      |++.+|.+++..+..+...+++|++|++.+| .+++. ++..+.++++|++|++++|.+.+....     ...+++|++|
T Consensus       110 L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L  189 (594)
T 2p1m_B          110 IRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSL  189 (594)
T ss_dssp             EEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEE
T ss_pred             EEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEE
Confidence            4455666665555555444677777777766 44432 222233566677777766664432211     1244455555


Q ss_pred             Eecccc
Q 048125           75 IISQNH   80 (258)
Q Consensus        75 ~l~~~~   80 (258)
                      ++++|.
T Consensus       190 ~l~~~~  195 (594)
T 2p1m_B          190 NISCLA  195 (594)
T ss_dssp             ECTTCC
T ss_pred             EecccC
Confidence            555553

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.64  E-value=2.8e-17  Score=144.95  Aligned_cols=139  Identities=21%  Similarity=0.318  Sum_probs=77.2

Q ss_pred             ccccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCcc
Q 048125           65 LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSG  144 (258)
Q Consensus        65 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~  144 (258)
                      +..+..|+.|++++|.+..        ++..+..+++|++|++++|.+. .+|..+..+ ++|+.|++++|.+. .+|..
T Consensus       220 ~~~l~~L~~L~Ls~n~l~~--------l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l-~~L~~L~Ls~N~l~-~lp~~  288 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIFN--------ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNL-SNLRVLDLSHNRLT-SLPAE  288 (727)
T ss_dssp             --CCCCCCEEECTTSCCSC--------CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGG-TTCCEEECTTSCCS-SCCSS
T ss_pred             hccCCCCcEEECCCCCCCC--------CChhhcCCCCCCEEEeeCCcCc-ccChhhhCC-CCCCEEeCcCCcCC-ccChh
Confidence            5556666666666666553        2223335566666666666665 555555444 36666666666665 45556


Q ss_pred             CCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCC-CcceEecccccccccCCc
Q 048125          145 LRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLT-LLMTLNFAENMLEGSIPS  215 (258)
Q Consensus       145 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~  215 (258)
                      ++.+++|++|++++|.+. ..|..|..+++|++|++++|.+.+..|..+.... ....+++++|.+.+.+|.
T Consensus       289 ~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~  359 (727)
T 4b8c_D          289 LGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH  359 (727)
T ss_dssp             GGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred             hcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence            666666666666666665 4455566666666666666666555444443221 112345556655544443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.64  E-value=1.6e-14  Score=118.85  Aligned_cols=227  Identities=12%  Similarity=0.102  Sum_probs=168.4

Q ss_pred             ccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCC-CccccCCcceEEeccccccCcCCC
Q 048125            9 LQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVP-SLENLHKLQRVIISQNHLGNYGEK   87 (258)
Q Consensus         9 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~   87 (258)
                      ++ .++...+.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.+ .+..... .|..+.+|+.+.+.++.++.++..
T Consensus       124 i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~  198 (401)
T 4fdw_A          124 VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPAS  198 (401)
T ss_dssp             CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTT
T ss_pred             cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechh
Confidence            44 5666666665 7999998765 665666677774 699999987 3443333 388889999999998888765443


Q ss_pred             ccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCC
Q 048125           88 DNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPG  167 (258)
Q Consensus        88 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  167 (258)
                             .+. +.+|+.+.+..+ +. .+....+..+.+|+.+.+..+ +......+|.. ++|+++.+.. .+..+...
T Consensus       199 -------aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~  265 (401)
T 4fdw_A          199 -------TFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASR  265 (401)
T ss_dssp             -------TTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTT
T ss_pred             -------hEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEChh
Confidence                   233 578999998754 43 445555555568999998764 34334455665 7899999964 45557788


Q ss_pred             cccCccCCcEEEecCCccc-----cccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccccc
Q 048125          168 SIGDLQKLQMLGLNGNKFL-----GEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVI  242 (258)
Q Consensus       168 ~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~  242 (258)
                      +|..+++|+.+.+.++...     ...+.+|..|++|+.+.+.+ .+.......+.+|.+|+.+.+..+ ++.....+|.
T Consensus       266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~  343 (401)
T 4fdw_A          266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFN  343 (401)
T ss_dssp             TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSS
T ss_pred             HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCC
Confidence            9999999999999887654     35567899999999999995 466677788899999999999655 7745567888


Q ss_pred             cccCcceeEecCCCC
Q 048125          243 GLSSLSIYLDLSQNQ  257 (258)
Q Consensus       243 ~~~~l~~~L~l~~n~  257 (258)
                      .+ +| +++++++|.
T Consensus       344 ~~-~L-~~l~l~~n~  356 (401)
T 4fdw_A          344 NT-GI-KEVKVEGTT  356 (401)
T ss_dssp             SS-CC-CEEEECCSS
T ss_pred             CC-CC-CEEEEcCCC
Confidence            88 89 999999875

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.64  E-value=2.1e-15  Score=111.88  Aligned_cols=128  Identities=22%  Similarity=0.312  Sum_probs=100.1

Q ss_pred             cceEEeccccccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCc
Q 048125           71 LQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVN  150 (258)
Q Consensus        71 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~  150 (258)
                      -+.++++++.++.++.        .+  .++++.|++++|.+. .+|..+..+ ++|+.|++++|.+....+..|..+++
T Consensus        12 ~~~l~~~~~~l~~ip~--------~~--~~~l~~L~L~~n~i~-~ip~~~~~l-~~L~~L~Ls~N~i~~i~~~~f~~l~~   79 (193)
T 2wfh_A           12 DTVVRCSNKGLKVLPK--------GI--PRDVTELYLDGNQFT-LVPKELSNY-KHLTLIDLSNNRISTLSNQSFSNMTQ   79 (193)
T ss_dssp             TTEEECTTSCCSSCCS--------CC--CTTCCEEECCSSCCC-SCCGGGGGC-TTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCEEEcCCCCCCcCCC--------CC--CCCCCEEECCCCcCc-hhHHHhhcc-cCCCEEECCCCcCCEeCHhHccCCCC
Confidence            3677888887764432        22  257888999988887 666656555 58899999988887666677888889


Q ss_pred             ccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEeccccccc
Q 048125          151 LELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLE  210 (258)
Q Consensus       151 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  210 (258)
                      |++|++++|.+....+..|..+++|++|++++|.+....+..|..+++|+.|++++|++.
T Consensus        80 L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           80 LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            999999999888777778888889999999999888655567888889999999988875

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.63  E-value=5.1e-17  Score=143.26  Aligned_cols=184  Identities=23%  Similarity=0.264  Sum_probs=114.2

Q ss_pred             CCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCC--CccchhhhccccCCCCcEEEeeccccccccccccccc
Q 048125           46 SNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGE--KDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNF  123 (258)
Q Consensus        46 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  123 (258)
                      +.++.|++.++.+......+     ++.+.|+.+.+.....  .........+..++.|+.|++++|.+. .++..++.+
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~-----l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l  246 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQAL-----LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKY  246 (727)
T ss_dssp             ------------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGC
T ss_pred             CccceEEeeCCCCCcchhhH-----hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCC
Confidence            45666677666665433222     2333333333322110  000023446778899999999999988 777777766


Q ss_pred             ccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEe
Q 048125          124 STRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLN  203 (258)
Q Consensus       124 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  203 (258)
                       +.|+.|++++|.+. .+|..+..+++|++|++++|.+. ..|..+..+++|++|++++|.+. .+|..|+.+++|+.|+
T Consensus       247 -~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~  322 (727)
T 4b8c_D          247 -DFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLG  322 (727)
T ss_dssp             -CSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEE
T ss_pred             -CCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEe
Confidence             58999999999988 78888899999999999999998 67888999999999999999998 7788899999999999


Q ss_pred             cccccccccCCcccccCcC-CcEEeccCCcccccccc
Q 048125          204 FAENMLEGSIPSSLGKCQN-LIVLDLYNNNLSGTIPS  239 (258)
Q Consensus       204 l~~n~~~~~~~~~~~~~~~-L~~L~l~~~~l~~~~~~  239 (258)
                      +++|.+.+.+|..+..... +..+++++|.+++.+|.
T Consensus       323 L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~  359 (727)
T 4b8c_D          323 VEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH  359 (727)
T ss_dssp             CTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred             CCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence            9999998777766644321 12355666666655443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.63  E-value=3.2e-15  Score=109.35  Aligned_cols=132  Identities=20%  Similarity=0.213  Sum_probs=94.6

Q ss_pred             CcceEEeccccccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCC
Q 048125           70 KLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLV  149 (258)
Q Consensus        70 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~  149 (258)
                      ..+.++++++.++.++.        .  ..++|+.|++++|.+.+..+..+..+ +++++|++++|.+....+..+..++
T Consensus         8 ~~~~l~~~~~~l~~~p~--------~--~~~~l~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~   76 (177)
T 2o6r_A            8 SGTEIRCNSKGLTSVPT--------G--IPSSATRLELESNKLQSLPHGVFDKL-TQLTKLSLSQNQIQSLPDGVFDKLT   76 (177)
T ss_dssp             ETTEEECCSSCCSSCCT--------T--CCTTCSEEECCSSCCCCCCTTTTTTC-TTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred             CCCEEEecCCCCccCCC--------C--CCCCCcEEEeCCCcccEeCHHHhcCc-ccccEEECCCCcceEeChhHccCCC
Confidence            45677777777764321        1  23578888888888773333333333 5788888888887755555677788


Q ss_pred             cccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEeccccccccc
Q 048125          150 NLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGS  212 (258)
Q Consensus       150 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  212 (258)
                      +|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+...
T Consensus        77 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           77 KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             ccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            888888888888866666677888888888888888755555667788888888888887643

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.61  E-value=8.8e-15  Score=117.55  Aligned_cols=216  Identities=8%  Similarity=0.002  Sum_probs=155.9

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccC----CCC-CCCccccCCcc-eEE
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGF----SGK-VPSLENLHKLQ-RVI   75 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----~~~-~~~~~~l~~L~-~L~   75 (258)
                      +++++ .++ .++...+.+|++|+++++.++.+..+.+..|.++.++..+.......    ... ...|..+..|+ .+.
T Consensus       106 l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~  183 (329)
T 3sb4_A          106 VILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQ  183 (329)
T ss_dssp             -CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEE
T ss_pred             EECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEE
Confidence            45666 677 78888888999999999999988877788888887777776655221    111 12255666776 444


Q ss_pred             eccccccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEE
Q 048125           76 ISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLD  155 (258)
Q Consensus        76 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~  155 (258)
                      +.....-.  .    ..........+++.+.+.+.-.. .....+...+++++.+++.+|.+....+.+|..+++|++++
T Consensus       184 ~~~~~~l~--~----~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~  256 (329)
T 3sb4_A          184 VGAMGKLE--D----EIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIK  256 (329)
T ss_dssp             ECTTCCHH--H----HHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEE
T ss_pred             ecCCCcHH--H----HHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEE
Confidence            43321100  0    11112223556777777665222 11222223346899999999888856667889999999999


Q ss_pred             eeCCccccccCCcccCccCCc-EEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEec
Q 048125          156 LSGNQFTSRIPGSIGDLQKLQ-MLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDL  228 (258)
Q Consensus       156 l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  228 (258)
                      +..+ +..+...+|.++++|+ .+++.+ .++...+.+|..|++|+.+++.+|.+....+..|.+|++|+.++.
T Consensus       257 l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          257 LPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             CCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            9997 7767889999999999 999988 777677789999999999999999998788889999999999875

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.59  E-value=1.7e-15  Score=107.63  Aligned_cols=130  Identities=22%  Similarity=0.251  Sum_probs=102.6

Q ss_pred             cCCCCcEEEeeccccc-ccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCc
Q 048125           98 NASRLELLQISDNNFG-GMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQ  176 (258)
Q Consensus        98 ~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  176 (258)
                      ..++++.|++++|.+. +.+|..+..+ ++++.|++++|.+...  ..+..+++|++|++++|.+.+..|..+..+++|+
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~   91 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEF-EELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT   91 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTC-TTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhc-CCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence            3467888888888776 4566555544 5788888888877644  6677888999999999999865777777789999


Q ss_pred             EEEecCCccccc-cCCCCCCCCCcceEecccccccccCC---cccccCcCCcEEeccC
Q 048125          177 MLGLNGNKFLGE-IPSSIGNLTLLMTLNFAENMLEGSIP---SSLGKCQNLIVLDLYN  230 (258)
Q Consensus       177 ~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~~  230 (258)
                      +|++++|.+++. .+..+..+++|++|++++|.+.+..+   ..+..+++|+.|++++
T Consensus        92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            999999998853 33678889999999999999986555   4678899999998763

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.59  E-value=2e-15  Score=110.32  Aligned_cols=135  Identities=20%  Similarity=0.229  Sum_probs=105.7

Q ss_pred             ccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccC
Q 048125           95 SLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQK  174 (258)
Q Consensus        95 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  174 (258)
                      .+..+++|+.|++++|.+. .++ .+....++++.|++++|.+...  ..+..+++|++|++++|.+....+..+..+++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~-~i~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIP-VIE-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCC-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hcCCcCCceEEEeeCCCCc-hhH-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            4566788999999999887 444 3444445899999999888743  56778889999999999888655566688889


Q ss_pred             CcEEEecCCccccccCC--CCCCCCCcceEecccccccccCCc----ccccCcCCcEEeccCCcccc
Q 048125          175 LQMLGLNGNKFLGEIPS--SIGNLTLLMTLNFAENMLEGSIPS----SLGKCQNLIVLDLYNNNLSG  235 (258)
Q Consensus       175 L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~----~~~~~~~L~~L~l~~~~l~~  235 (258)
                      |++|++++|.+. .+|.  .+..+++|+.|++++|.+. ..|.    .+..+++|+.|++++|.+.+
T Consensus        90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            999999999886 4554  6788889999999999987 4455    37788999999999888763

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.58  E-value=3.1e-15  Score=109.28  Aligned_cols=126  Identities=18%  Similarity=0.166  Sum_probs=67.7

Q ss_pred             ccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecc
Q 048125          126 RLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFA  205 (258)
Q Consensus       126 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  205 (258)
                      +++.|++++|.+. .++......++|++|++++|.+.+.  ..+..+++|++|++++|.+.+..+..+..+++|+.|+++
T Consensus        20 ~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~   96 (176)
T 1a9n_A           20 RDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT   96 (176)
T ss_dssp             SCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred             CceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence            5566666666554 2232222223566666666665533  345556666666666666653322333555666666666


Q ss_pred             cccccccCCc--ccccCcCCcEEeccCCccccccccc----cccccCcceeEecCCCC
Q 048125          206 ENMLEGSIPS--SLGKCQNLIVLDLYNNNLSGTIPSE----VIGLSSLSIYLDLSQNQ  257 (258)
Q Consensus       206 ~n~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~----~~~~~~l~~~L~l~~n~  257 (258)
                      +|.+. .+|.  .+..+++|+.|++++|.+. .++..    +..++.+ ++||+++|.
T Consensus        97 ~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L-~~Ld~~~n~  151 (176)
T 1a9n_A           97 NNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQV-RVLDFQKVK  151 (176)
T ss_dssp             SCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTC-SEETTEECC
T ss_pred             CCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCcc-ceeCCCcCC
Confidence            66654 2333  4555666666666666665 34432    5555666 666665553

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.51  E-value=7.6e-14  Score=101.26  Aligned_cols=107  Identities=23%  Similarity=0.299  Sum_probs=92.6

Q ss_pred             ccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecc
Q 048125          126 RLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFA  205 (258)
Q Consensus       126 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  205 (258)
                      ..+.++++++.+. .+|..+  .+.+++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            5678999998887 466554  3789999999999998778889999999999999999997667778999999999999


Q ss_pred             cccccccCCcccccCcCCcEEeccCCcccc
Q 048125          206 ENMLEGSIPSSLGKCQNLIVLDLYNNNLSG  235 (258)
Q Consensus       206 ~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~  235 (258)
                      +|.+.+..+..+..+++|+.|++++|.+..
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            999997666678899999999999998874

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.50  E-value=1.5e-16  Score=118.67  Aligned_cols=112  Identities=27%  Similarity=0.250  Sum_probs=57.7

Q ss_pred             ccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccC
Q 048125           95 SLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQK  174 (258)
Q Consensus        95 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  174 (258)
                      .+..+++|++|++++|.+.+ +| .+..+ ++++.|++++|.+. .+|..+..+++|++|++++|.+.+ .+ .+..+++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l-~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~  116 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGM-ENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN  116 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHH-TTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccC-CCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence            45555666666666665552 33 33333 35666666665554 344444444556666666655553 22 3455555


Q ss_pred             CcEEEecCCccccccC-CCCCCCCCcceEeccccccccc
Q 048125          175 LQMLGLNGNKFLGEIP-SSIGNLTLLMTLNFAENMLEGS  212 (258)
Q Consensus       175 L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~  212 (258)
                      |++|++++|.+.+..+ ..+..+++|++|++++|.+.+.
T Consensus       117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence            6666665555542111 2345555555555555555433

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.49  E-value=1.5e-13  Score=100.13  Aligned_cols=105  Identities=27%  Similarity=0.366  Sum_probs=89.7

Q ss_pred             cceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEeccc
Q 048125          127 LGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAE  206 (258)
Q Consensus       127 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  206 (258)
                      .+.++++++.+. .+|..+.  +.+++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            467888888876 5666553  7899999999999977788899999999999999999866566678999999999999


Q ss_pred             ccccccCCcccccCcCCcEEeccCCccc
Q 048125          207 NMLEGSIPSSLGKCQNLIVLDLYNNNLS  234 (258)
Q Consensus       207 n~~~~~~~~~~~~~~~L~~L~l~~~~l~  234 (258)
                      |.+.+..+..+..+++|+.|++++|.+.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcc
Confidence            9998665566888999999999999988

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.47  E-value=3.5e-13  Score=97.77  Aligned_cols=107  Identities=24%  Similarity=0.292  Sum_probs=93.9

Q ss_pred             CCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEe
Q 048125          101 RLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGL  180 (258)
Q Consensus       101 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  180 (258)
                      ..+.++++++.+. .+|..+.   ..++.|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++|++
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEEeCCCCcC-ccCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence            4688999999887 6776553   58999999999998767888999999999999999999777888899999999999


Q ss_pred             cCCccccccCCCCCCCCCcceEecccccccc
Q 048125          181 NGNKFLGEIPSSIGNLTLLMTLNFAENMLEG  211 (258)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  211 (258)
                      ++|.+++..+..|..+++|+.|++++|++..
T Consensus        86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            9999996666679999999999999999873

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.46  E-value=2.7e-15  Score=111.72  Aligned_cols=131  Identities=23%  Similarity=0.263  Sum_probs=78.1

Q ss_pred             CCCCceEEecCCcccccccc------cccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhh
Q 048125           21 LPNLEGLNLAGNQFTGPIPV------SISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVN   94 (258)
Q Consensus        21 ~~~L~~L~l~~~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~   94 (258)
                      .+.++.+++..+.+.+..|.      .+..+++|++|++++|.+...+ .+..+++|+.|++++|.++.+        +.
T Consensus        17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l--------~~   87 (198)
T 1ds9_A           17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKI--------EN   87 (198)
T ss_dssp             TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSC--------SS
T ss_pred             cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccc--------cc
Confidence            55666666666666555444      6777777778887777776644 566677777777777776632        22


Q ss_pred             ccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccC-ccCCCCCcccEEEeeCCcccc
Q 048125           95 SLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIP-SGLRNLVNLELLDLSGNQFTS  163 (258)
Q Consensus        95 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~  163 (258)
                      .+..+++|++|++++|.+. .++ .+..+ ++++.|++++|.+....+ ..+..+++|++|++++|++.+
T Consensus        88 ~~~~~~~L~~L~L~~N~l~-~l~-~~~~l-~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A           88 LDAVADTLEELWISYNQIA-SLS-GIEKL-VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             HHHHHHHCSEEEEEEEECC-CHH-HHHHH-HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             hhhcCCcCCEEECcCCcCC-cCC-ccccC-CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence            3344566777777777665 233 23333 356666666665542211 234455556666666665543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.44  E-value=7.1e-13  Score=96.46  Aligned_cols=106  Identities=24%  Similarity=0.287  Sum_probs=92.5

Q ss_pred             CcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEec
Q 048125          102 LELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLN  181 (258)
Q Consensus       102 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  181 (258)
                      -+.++++++.+. .+|..+.   +.++.|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|+++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CcEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence            478999999886 7776554   589999999999987678889999999999999999997777778999999999999


Q ss_pred             CCccccccCCCCCCCCCcceEecccccccc
Q 048125          182 GNKFLGEIPSSIGNLTLLMTLNFAENMLEG  211 (258)
Q Consensus       182 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  211 (258)
                      +|.+.+..+..|..+++|+.|++++|.+..
T Consensus        90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             CCccceeCHHHhccccCCCEEEeCCCCccc
Confidence            999996655669999999999999999873

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.43  E-value=3.4e-15  Score=121.64  Aligned_cols=165  Identities=16%  Similarity=0.130  Sum_probs=84.4

Q ss_pred             CCcceEEeccccccCcCCCccchhhhcccc-CCCCcEEEeecccccccccccccccccccceEEecccccCCccCccC--
Q 048125           69 HKLQRVIISQNHLGNYGEKDNLEFVNSLVN-ASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGL--  145 (258)
Q Consensus        69 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~--  145 (258)
                      +.|++|++++|.+++....   .+...+.. .++|++|++++|.+.......+.....+++.|++++|.+.+.....+  
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~---~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~  148 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCT---VVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD  148 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHH---HHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHH---HHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence            4556666666655442221   12222221 24566666666655433222232222356666666665543221111  


Q ss_pred             ---CCCCcccEEEeeCCccccc----cCCcccCccCCcEEEecCCcccc----ccCCCCCCCCCcceEecccccccccC-
Q 048125          146 ---RNLVNLELLDLSGNQFTSR----IPGSIGDLQKLQMLGLNGNKFLG----EIPSSIGNLTLLMTLNFAENMLEGSI-  213 (258)
Q Consensus       146 ---~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~-  213 (258)
                         ...+.|++|++++|.+...    .+..+...++|++|++++|.+.+    .++..+..+++|++|++++|.+++.. 
T Consensus       149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~  228 (372)
T 3un9_A          149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA  228 (372)
T ss_dssp             HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred             HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence               2345666667766666431    22333455667777777776653    22344555566777777777665422 


Q ss_pred             ---CcccccCcCCcEEeccCCccccc
Q 048125          214 ---PSSLGKCQNLIVLDLYNNNLSGT  236 (258)
Q Consensus       214 ---~~~~~~~~~L~~L~l~~~~l~~~  236 (258)
                         ...+..+++|+.|++++|.|.+.
T Consensus       229 ~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          229 LALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             HHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             HHHHHHHHhCCCCCEEeccCCCCCHH
Confidence               22333456677777777776643

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.39  E-value=1.1e-14  Score=118.55  Aligned_cols=159  Identities=19%  Similarity=0.151  Sum_probs=117.7

Q ss_pred             CCCCcEEEeeccccccccccc----ccccccccceEEecccccCCccCccC-CCCCcccEEEeeCCccccccCCcc----
Q 048125           99 ASRLELLQISDNNFGGMLPEA----VGNFSTRLGILSVAENQLFGNIPSGL-RNLVNLELLDLSGNQFTSRIPGSI----  169 (258)
Q Consensus        99 ~~~L~~L~l~~~~~~~~~~~~----~~~~~~~l~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~----  169 (258)
                      .+.|+.|++++|.++......    +......++.|++++|.+.......+ ..+++|++|++++|.+.......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            467999999999886432222    22222589999999998764322222 345689999999999975433333    


Q ss_pred             -cCccCCcEEEecCCcccc----ccCCCCCCCCCcceEecccccccccC----CcccccCcCCcEEeccCCccccc----
Q 048125          170 -GDLQKLQMLGLNGNKFLG----EIPSSIGNLTLLMTLNFAENMLEGSI----PSSLGKCQNLIVLDLYNNNLSGT----  236 (258)
Q Consensus       170 -~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~~~l~~~----  236 (258)
                       ...++|++|++++|.+.+    .++..+..+++|++|++++|.+.+..    ...+..+++|+.|++++|.|++.    
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             246789999999999865    34445577899999999999987533    45566788999999999999853    


Q ss_pred             cccccccccCcceeEecCCCCC
Q 048125          237 IPSEVIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       237 ~~~~~~~~~~l~~~L~l~~n~~  258 (258)
                      ++..+..+++| ++|||++|+|
T Consensus       231 l~~~L~~~~~L-~~L~Ls~N~i  251 (372)
T 3un9_A          231 LARAAREHPSL-ELLHLYFNEL  251 (372)
T ss_dssp             HHHHHHHCSSC-CEEECTTSSC
T ss_pred             HHHHHHhCCCC-CEEeccCCCC
Confidence            34556677999 9999999986

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.27  E-value=1.4e-11  Score=99.47  Aligned_cols=105  Identities=20%  Similarity=0.118  Sum_probs=85.2

Q ss_pred             ceEEeccc-ccCCccCccCCCCCcccEEEeeC-CccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecc
Q 048125          128 GILSVAEN-QLFGNIPSGLRNLVNLELLDLSG-NQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFA  205 (258)
Q Consensus       128 ~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  205 (258)
                      ..++++++ .+. .+|. +..+++|++|++++ |.+....+..|..+++|+.|+|++|.+.+..|..|..+++|+.|+++
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            45677776 665 5777 88888999999996 88887777888999999999999999988778888999999999999


Q ss_pred             cccccccCCcccccCcCCcEEeccCCcccc
Q 048125          206 ENMLEGSIPSSLGKCQNLIVLDLYNNNLSG  235 (258)
Q Consensus       206 ~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~  235 (258)
                      +|.+.+..+..+..++ |+.|++.+|.+..
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            9999855555555444 9999999998873

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.25  E-value=3.1e-10  Score=93.25  Aligned_cols=108  Identities=11%  Similarity=0.174  Sum_probs=55.6

Q ss_pred             cCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCC
Q 048125          144 GLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNL  223 (258)
Q Consensus       144 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L  223 (258)
                      +|..++.|+.+.+..+... +...+|..++.|+.+.+. +.++.....+|..|.+|+.+++..+ +.......|.+|.+|
T Consensus       260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L  336 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL  336 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred             eeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence            3445556666666544322 444555555556655554 2333333445566666666666543 333444555556666


Q ss_pred             cEEeccCCccccccccccccccCcceeEecCCC
Q 048125          224 IVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQN  256 (258)
Q Consensus       224 ~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n  256 (258)
                      +.+.+..+ ++.....+|..|.+| ..+++.++
T Consensus       337 ~~i~ip~s-v~~I~~~aF~~C~~L-~~i~~~~~  367 (394)
T 4gt6_A          337 ERIAIPSS-VTKIPESAFSNCTAL-NNIEYSGS  367 (394)
T ss_dssp             CEEEECTT-CCBCCGGGGTTCTTC-CEEEESSC
T ss_pred             CEEEECcc-cCEEhHhHhhCCCCC-CEEEECCc
Confidence            66666433 442334455556666 55555543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.22  E-value=4e-10  Score=92.64  Aligned_cols=101  Identities=15%  Similarity=0.080  Sum_probs=62.1

Q ss_pred             cCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCC
Q 048125          144 GLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNL  223 (258)
Q Consensus       144 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L  223 (258)
                      .|..+.+|+++.+..+ +..+...+|..+.+|+.+++..+ ++.....+|..|.+|+.+++..+ +.......+.+|.+|
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L  368 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL  368 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence            4555666777776654 44355666777777777777543 44444556777777777777665 444555667777777


Q ss_pred             cEEeccCCccccccccccccccCccee
Q 048125          224 IVLDLYNNNLSGTIPSEVIGLSSLSIY  250 (258)
Q Consensus       224 ~~L~l~~~~l~~~~~~~~~~~~~l~~~  250 (258)
                      +.+++..+ +. .+..+|..+.+| ++
T Consensus       369 ~~i~lp~~-~~-~~~~~F~~c~~L-~~  392 (394)
T 4fs7_A          369 KKVELPKR-LE-QYRYDFEDTTKF-KW  392 (394)
T ss_dssp             CEEEEEGG-GG-GGGGGBCTTCEE-EE
T ss_pred             CEEEECCC-CE-EhhheecCCCCC-cE
Confidence            77777543 33 334556666666 54

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.21  E-value=4.6e-11  Score=96.48  Aligned_cols=104  Identities=19%  Similarity=0.150  Sum_probs=85.8

Q ss_pred             cEEEeecc-cccccccccccccccccceEEecc-cccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEe
Q 048125          103 ELLQISDN-NFGGMLPEAVGNFSTRLGILSVAE-NQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGL  180 (258)
Q Consensus       103 ~~L~l~~~-~~~~~~~~~~~~~~~~l~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  180 (258)
                      ..++.+++ .+. .+|. +... .+|+.|++++ |.+....+..|..+++|++|++++|.+.+..+..|..+++|++|+|
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~-~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l   87 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGA-ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSC-SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCC-CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence            35677777 676 6777 5554 5799999996 8887556678899999999999999999888889999999999999


Q ss_pred             cCCccccccCCCCCCCCCcceEeccccccc
Q 048125          181 NGNKFLGEIPSSIGNLTLLMTLNFAENMLE  210 (258)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  210 (258)
                      ++|.+.+..+..+..++ |+.|++.+|.+.
T Consensus        88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           88 SFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            99999865555666665 999999999986

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.13  E-value=1.8e-09  Score=88.69  Aligned_cols=223  Identities=14%  Similarity=0.044  Sum_probs=156.7

Q ss_pred             CCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchh
Q 048125           13 LPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEF   92 (258)
Q Consensus        13 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~   92 (258)
                      +....+.+|.+|+.+.+... +..+....|.++.+|+.+.+..+-.......+..+..|+.+.+..+...         .
T Consensus       153 i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~~~~~---------i  222 (394)
T 4fs7_A          153 IGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPNSLYY---------L  222 (394)
T ss_dssp             ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCTTCCE---------E
T ss_pred             cchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCCceEeCchhhccccccceeecCCCceE---------e
Confidence            44556678999999999765 3335566788999999999987633223334778888888877654321         1


Q ss_pred             hhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCc
Q 048125           93 VNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDL  172 (258)
Q Consensus        93 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  172 (258)
                      .........|+.+.+.... . .+....+..+..++.+.+..+... .....|..+..++.+......+   ....|..+
T Consensus       223 ~~~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~  296 (394)
T 4fs7_A          223 GDFALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGC  296 (394)
T ss_dssp             CTTTTTTCCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTC
T ss_pred             ehhhcccCCCceEEECCCc-e-ecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---cccccccc
Confidence            1233345678888876542 2 223333334457888888765332 4456677788888888776543   34678889


Q ss_pred             cCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccccccccCcceeEe
Q 048125          173 QKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLD  252 (258)
Q Consensus       173 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~  252 (258)
                      .+|+.+.+.++ ++.....+|..+.+|+.+++..+ +.......+.+|.+|+.+.+..+ ++.....+|..+.+| +.++
T Consensus       297 ~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L-~~i~  372 (394)
T 4fs7_A          297 SSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL-KKVE  372 (394)
T ss_dssp             TTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC-CEEE
T ss_pred             ccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC-CEEE
Confidence            99999999764 55455678999999999999765 55566788899999999999876 765556789999999 8888


Q ss_pred             cCC
Q 048125          253 LSQ  255 (258)
Q Consensus       253 l~~  255 (258)
                      +..
T Consensus       373 lp~  375 (394)
T 4fs7_A          373 LPK  375 (394)
T ss_dssp             EEG
T ss_pred             ECC
Confidence            754

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.10  E-value=6.5e-09  Score=85.37  Aligned_cols=124  Identities=10%  Similarity=0.121  Sum_probs=88.0

Q ss_pred             cccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEec
Q 048125          125 TRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNF  204 (258)
Q Consensus       125 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  204 (258)
                      ..++.+.+..... .....+|..++.|+++.+.. .+..+...+|.++.+|+.+.+..+ ++.....+|..|.+|+++.+
T Consensus       265 ~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~i  341 (394)
T 4gt6_A          265 AYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAI  341 (394)
T ss_dssp             SSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred             ccccEEecccccc-eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEE
Confidence            4566666644322 23445677889999999974 455577789999999999999764 55566678999999999999


Q ss_pred             ccccccccCCcccccCcCCcEEeccCCccccccccccccccCcceeEecCCC
Q 048125          205 AENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQN  256 (258)
Q Consensus       205 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n  256 (258)
                      ..+ +.......|.+|.+|+.+++.++...   ...+..+..| +.+.+..+
T Consensus       342 p~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L-~~i~i~~~  388 (394)
T 4gt6_A          342 PSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGL-QNLPVAPG  388 (394)
T ss_dssp             CTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC---------
T ss_pred             Ccc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCC-CEEEeCCC
Confidence            765 55566788999999999999998754   2456777888 88887654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.05  E-value=9.8e-11  Score=94.76  Aligned_cols=156  Identities=19%  Similarity=0.188  Sum_probs=77.3

Q ss_pred             ccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccC--CCCCcccEEEeeCC--ccccc-----c
Q 048125           95 SLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGL--RNLVNLELLDLSGN--QFTSR-----I  165 (258)
Q Consensus        95 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~--~~~~~-----~  165 (258)
                      .+..+|+|+.|.++++.-. .++. +.  .++|+.|++..+.+.......+  ..+++|++|++..+  ...+.     .
T Consensus       167 ll~~~P~L~~L~L~g~~~l-~l~~-~~--~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l  242 (362)
T 2ra8_A          167 VLDAMPLLNNLKIKGTNNL-SIGK-KP--RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF  242 (362)
T ss_dssp             HHHTCTTCCEEEEECCBTC-BCCS-CB--CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred             HHhcCCCCcEEEEeCCCCc-eecc-cc--CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence            3455667777777665211 2222 11  2467777776655432221222  24566777766421  11100     0


Q ss_pred             CCcc--cCccCCcEEEecCCccccccCCCC---CCCCCcceEecccccccccC----CcccccCcCCcEEeccCCccccc
Q 048125          166 PGSI--GDLQKLQMLGLNGNKFLGEIPSSI---GNLTLLMTLNFAENMLEGSI----PSSLGKCQNLIVLDLYNNNLSGT  236 (258)
Q Consensus       166 ~~~~--~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~~~l~~~  236 (258)
                      ...+  ..+++|++|.+.+|.+.+..+..+   ..+++|++|+++.|.+.+..    +..+..+++|+.|++++|.|++.
T Consensus       243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~  322 (362)
T 2ra8_A          243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE  322 (362)
T ss_dssp             GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred             HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence            1112  235677777777776653221111   24677777777777766432    22334467777777777776644


Q ss_pred             cccccccccCcceeEecCCC
Q 048125          237 IPSEVIGLSSLSIYLDLSQN  256 (258)
Q Consensus       237 ~~~~~~~~~~l~~~L~l~~n  256 (258)
                      ....+...- . ..++++.+
T Consensus       323 ~~~~l~~al-g-~~~~~~~~  340 (362)
T 2ra8_A          323 MKKELQKSL-P-MKIDVSDS  340 (362)
T ss_dssp             HHHHHHHHC-C-SEEECCSB
T ss_pred             HHHHHHHHc-C-CEEEecCC
Confidence            333332211 2 44555543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.05  E-value=2.4e-10  Score=92.46  Aligned_cols=159  Identities=16%  Similarity=0.136  Sum_probs=103.2

Q ss_pred             ccccCCCCcEEEeeccccc---------ccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCcccccc
Q 048125           95 SLVNASRLELLQISDNNFG---------GMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRI  165 (258)
Q Consensus        95 ~~~~~~~L~~L~l~~~~~~---------~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  165 (258)
                      +...+++|+.|.+......         +.+...+. .+|.|+.|.+.++... .++. +. .++|++|++..+.+....
T Consensus       134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~-~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~  209 (362)
T 2ra8_A          134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLD-AMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSV  209 (362)
T ss_dssp             THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHH-TCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHH
T ss_pred             hhhhcchhhheeecCcchhhcccccccccCHHHHHh-cCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHH
Confidence            3445677777777543221         01222222 3368999999887322 2333 33 789999999988876433


Q ss_pred             CCccc--CccCCcEEEecCC--cccc-----ccCCCC--CCCCCcceEecccccccccCCcccc---cCcCCcEEeccCC
Q 048125          166 PGSIG--DLQKLQMLGLNGN--KFLG-----EIPSSI--GNLTLLMTLNFAENMLEGSIPSSLG---KCQNLIVLDLYNN  231 (258)
Q Consensus       166 ~~~~~--~~~~L~~L~l~~~--~~~~-----~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~---~~~~L~~L~l~~~  231 (258)
                      ...+.  .+++|++|+|+.+  ...+     .+...+  ..+|+|+.|++.+|.+.+..+..+.   .+++|+.|+++.|
T Consensus       210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n  289 (362)
T 2ra8_A          210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG  289 (362)
T ss_dssp             HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred             HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence            23333  6899999998532  1110     111223  3589999999999998754333332   4789999999999


Q ss_pred             ccccc----cccccccccCcceeEecCCCCC
Q 048125          232 NLSGT----IPSEVIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       232 ~l~~~----~~~~~~~~~~l~~~L~l~~n~~  258 (258)
                      .+.+.    ++.++..+++| +.|+|++|++
T Consensus       290 ~L~d~G~~~L~~~L~~l~~L-~~L~L~~n~i  319 (362)
T 2ra8_A          290 VLTDEGARLLLDHVDKIKHL-KFINMKYNYL  319 (362)
T ss_dssp             CCBHHHHHHHHTTHHHHTTC-SEEECCSBBC
T ss_pred             CCChHHHHHHHhhcccCCcc-eEEECCCCcC
Confidence            99854    34455667899 9999999875

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.01  E-value=4.5e-08  Score=79.88  Aligned_cols=106  Identities=13%  Similarity=0.081  Sum_probs=56.1

Q ss_pred             cCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCC
Q 048125          144 GLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNL  223 (258)
Q Consensus       144 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L  223 (258)
                      .+..+..|+++.+..+ +..+...+|..+.+++.+.+..+ +......+|..+++|+.+.+.++.+.......+.+|.+|
T Consensus       235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L  312 (379)
T 4h09_A          235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL  312 (379)
T ss_dssp             TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred             cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence            3444556666666543 33344455555556666655432 332333455666666666666655554455556666666


Q ss_pred             cEEeccCCccccccccccccccCcceeEec
Q 048125          224 IVLDLYNNNLSGTIPSEVIGLSSLSIYLDL  253 (258)
Q Consensus       224 ~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l  253 (258)
                      +.+.+..+ ++.....+|..+.+| +.+.+
T Consensus       313 ~~i~lp~~-l~~I~~~aF~~C~~L-~~i~i  340 (379)
T 4h09_A          313 SSVTLPTA-LKTIQVYAFKNCKAL-STISY  340 (379)
T ss_dssp             CEEECCTT-CCEECTTTTTTCTTC-CCCCC
T ss_pred             CEEEcCcc-ccEEHHHHhhCCCCC-CEEEE
Confidence            66666433 443334455555665 55554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.80  E-value=4.4e-10  Score=82.46  Aligned_cols=110  Identities=13%  Similarity=0.165  Sum_probs=63.4

Q ss_pred             cccceEEeccc-ccCCc----cCccCCCCCcccEEEeeCCccccc----cCCcccCccCCcEEEecCCcccc----ccCC
Q 048125          125 TRLGILSVAEN-QLFGN----IPSGLRNLVNLELLDLSGNQFTSR----IPGSIGDLQKLQMLGLNGNKFLG----EIPS  191 (258)
Q Consensus       125 ~~l~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~----~~~~  191 (258)
                      +.+++|++++| .+.+.    +...+...+.|++|++++|.+...    ....+...++|++|++++|.+.+    .+..
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~  115 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE  115 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence            46777777776 55432    233444556677777777766532    22333444567777777776654    2344


Q ss_pred             CCCCCCCcceEec--ccccccccC----CcccccCcCCcEEeccCCccc
Q 048125          192 SIGNLTLLMTLNF--AENMLEGSI----PSSLGKCQNLIVLDLYNNNLS  234 (258)
Q Consensus       192 ~~~~~~~L~~L~l--~~n~~~~~~----~~~~~~~~~L~~L~l~~~~l~  234 (258)
                      .+...++|++|++  ++|.+.+..    ...+...++|+.|++++|.+.
T Consensus       116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            5555666777777  666665432    233344566777777766664

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.67  E-value=2.7e-06  Score=69.33  Aligned_cols=117  Identities=12%  Similarity=0.093  Sum_probs=86.8

Q ss_pred             cccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEec
Q 048125          125 TRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNF  204 (258)
Q Consensus       125 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  204 (258)
                      ..++.+.+..+ +......+|..+.+++.+.+..+ +......+|..+++|+.+.+.++.++.....+|..|.+|+.+.+
T Consensus       240 ~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l  317 (379)
T 4h09_A          240 KALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL  317 (379)
T ss_dssp             SSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred             ccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEc
Confidence            46777777554 33234556777889999998764 44466778999999999999888887666778999999999999


Q ss_pred             ccccccccCCcccccCcCCcEEeccCCcccccccccccccc
Q 048125          205 AENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLS  245 (258)
Q Consensus       205 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~  245 (258)
                      ..+ +.......+.+|.+|+.+.+..+ ++.....+|..+.
T Consensus       318 p~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          318 PTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             CTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             Ccc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            765 55466778889999999988654 5533445565554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.66  E-value=5.7e-09  Score=74.99  Aligned_cols=106  Identities=15%  Similarity=0.095  Sum_probs=75.1

Q ss_pred             CCcccEEEeeCCccccccCCcccCccCCcEEEecCCc-cccccCCCCCC----CCCcceEeccccc-ccccCCcccccCc
Q 048125          148 LVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNK-FLGEIPSSIGN----LTLLMTLNFAENM-LEGSIPSSLGKCQ  221 (258)
Q Consensus       148 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~----~~~L~~L~l~~n~-~~~~~~~~~~~~~  221 (258)
                      ...|++|+++++.++...-..+.++++|++|++++|. +++.--..+..    +++|++|++++|. +++.....+..++
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            3479999999999876655667889999999999985 55432233443    3579999999985 8776677778899


Q ss_pred             CCcEEeccCC-cccccc---ccccccccCcceeEec
Q 048125          222 NLIVLDLYNN-NLSGTI---PSEVIGLSSLSIYLDL  253 (258)
Q Consensus       222 ~L~~L~l~~~-~l~~~~---~~~~~~~~~l~~~L~l  253 (258)
                      +|+.|++++| .|++..   ...-..+|.+...+|+
T Consensus       140 ~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V~~~~  175 (176)
T 3e4g_A          140 NLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELKLDL  175 (176)
T ss_dssp             TCCEEEEESCTTCCCHHHHHHHHHHHCTTCEEEEEC
T ss_pred             CCCEEECCCCCCCCchHHHHHHHHHHCCCcEEEecc
Confidence            9999999998 465321   1122355666445543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.62  E-value=9e-09  Score=73.94  Aligned_cols=83  Identities=6%  Similarity=0.039  Sum_probs=52.2

Q ss_pred             ccceEEecccccCCccCccCCCCCcccEEEeeCCc-cccccCCcccC----ccCCcEEEecCCc-cccccCCCCCCCCCc
Q 048125          126 RLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQ-FTSRIPGSIGD----LQKLQMLGLNGNK-FLGEIPSSIGNLTLL  199 (258)
Q Consensus       126 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~----~~~L~~L~l~~~~-~~~~~~~~~~~~~~L  199 (258)
                      .++.|++++|.+++..-..+..+++|++|++++|. +++..-..+..    .++|++|++++|. +++.--..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            57777777777665544455667777788877773 55332233333    2367777777774 554333345567777


Q ss_pred             ceEeccccc
Q 048125          200 MTLNFAENM  208 (258)
Q Consensus       200 ~~L~l~~n~  208 (258)
                      ++|++++|.
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            777777775

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.54  E-value=6.7e-09  Score=76.07  Aligned_cols=16  Identities=13%  Similarity=0.123  Sum_probs=7.8

Q ss_pred             CCCCCcceEecccccc
Q 048125          194 GNLTLLMTLNFAENML  209 (258)
Q Consensus       194 ~~~~~L~~L~l~~n~~  209 (258)
                      ...++|++|++++|.+
T Consensus       148 ~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          148 EKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHCSSCCEEECCCSSH
T ss_pred             HhCCCcCEEeccCCCC
Confidence            3344455555555544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.18  E-value=1.1e-06  Score=67.78  Aligned_cols=79  Identities=27%  Similarity=0.328  Sum_probs=45.0

Q ss_pred             CccCCcEEEecCCcccc--ccCCCCCCCCCcceEecccccccccCCcccccCc--CCcEEeccCCccccccc-------c
Q 048125          171 DLQKLQMLGLNGNKFLG--EIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQ--NLIVLDLYNNNLSGTIP-------S  239 (258)
Q Consensus       171 ~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~--~L~~L~l~~~~l~~~~~-------~  239 (258)
                      .+++|+.|++++|.+.+  .++..+..+++|+.|++++|.+.+.  ..+..+.  +|+.|++++|.+.+.+|       .
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            45566667776666654  2334445666677777777766532  2233333  67777777777664333       2


Q ss_pred             ccccccCcceeEe
Q 048125          240 EVIGLSSLSIYLD  252 (258)
Q Consensus       240 ~~~~~~~l~~~L~  252 (258)
                      .+..+|+| ..||
T Consensus       246 il~~~P~L-~~LD  257 (267)
T 3rw6_A          246 IRERFPKL-LRLD  257 (267)
T ss_dssp             HHHHCTTC-CEES
T ss_pred             HHHHCccc-CeEC
Confidence            24555666 6555

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.15  E-value=1.6e-06  Score=66.85  Aligned_cols=81  Identities=26%  Similarity=0.303  Sum_probs=60.5

Q ss_pred             CCCcccEEEeeCCccccc--cCCcccCccCCcEEEecCCccccc-cCCCCCCCCCcceEecccccccccCCc-------c
Q 048125          147 NLVNLELLDLSGNQFTSR--IPGSIGDLQKLQMLGLNGNKFLGE-IPSSIGNLTLLMTLNFAENMLEGSIPS-------S  216 (258)
Q Consensus       147 ~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~-------~  216 (258)
                      .+++|++|++++|.+.+.  .+..+..+++|+.|+|++|.+.+. ....+..+ +|++|++++|++.+..|.       .
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHH
Confidence            467899999999999863  345667899999999999998753 11223333 899999999999865552       3


Q ss_pred             cccCcCCcEEec
Q 048125          217 LGKCQNLIVLDL  228 (258)
Q Consensus       217 ~~~~~~L~~L~l  228 (258)
                      +..+++|+.|+-
T Consensus       247 l~~~P~L~~LDg  258 (267)
T 3rw6_A          247 RERFPKLLRLDG  258 (267)
T ss_dssp             HHHCTTCCEESS
T ss_pred             HHHCcccCeECC
Confidence            567899987763

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.85  E-value=1.8e-06  Score=63.19  Aligned_cols=81  Identities=11%  Similarity=0.098  Sum_probs=38.7

Q ss_pred             ccceEEeccc-ccCCc----cCccCCCCCcccEEEeeCCcccccc----CCcccCccCCcEEEecCCcccc----ccCCC
Q 048125          126 RLGILSVAEN-QLFGN----IPSGLRNLVNLELLDLSGNQFTSRI----PGSIGDLQKLQMLGLNGNKFLG----EIPSS  192 (258)
Q Consensus       126 ~l~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~----~~~~~  192 (258)
                      .++.|+++.+ .+.+.    +.+++...+.|++|++++|.+.+..    ...+...+.|++|+|++|.+.+    .+.++
T Consensus        42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a  121 (197)
T 1pgv_A           42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS  121 (197)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred             CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence            4566666553 44321    2333444455666666666554322    2222334555556665555543    22334


Q ss_pred             CCCCCCcceEeccc
Q 048125          193 IGNLTLLMTLNFAE  206 (258)
Q Consensus       193 ~~~~~~L~~L~l~~  206 (258)
                      +...+.|++|++++
T Consensus       122 L~~N~tL~~L~L~n  135 (197)
T 1pgv_A          122 TLVTQSIVEFKADN  135 (197)
T ss_dssp             TTTTCCCSEEECCC
T ss_pred             HhhCCceeEEECCC
Confidence            44445555555554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.49  E-value=1.5e-05  Score=58.21  Aligned_cols=10  Identities=30%  Similarity=0.627  Sum_probs=4.3

Q ss_pred             CCCcEEEeec
Q 048125           46 SNLRELMIGK   55 (258)
Q Consensus        46 ~~L~~L~l~~   55 (258)
                      +.|++|++++
T Consensus        41 ~~L~~L~L~~   50 (197)
T 1pgv_A           41 TDLKEVNINN   50 (197)
T ss_dssp             SSCCEEECTT
T ss_pred             CCccEEECCC
Confidence            3444444443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.13  E-value=0.00082  Score=45.73  Aligned_cols=56  Identities=16%  Similarity=0.148  Sum_probs=35.3

Q ss_pred             EEEecCCccc-cccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccc
Q 048125          177 MLGLNGNKFL-GEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLS  234 (258)
Q Consensus       177 ~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~  234 (258)
                      .++.+++.++ ..+|..+.  ++++.|++++|.++...+..+..+++|+.|++.+|...
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5566666654 23443332  45777777777777555556666777777777777654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.54  E-value=0.0032  Score=42.75  Aligned_cols=55  Identities=18%  Similarity=0.323  Sum_probs=36.6

Q ss_pred             eEEecCCccc-ccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEecccccc
Q 048125           26 GLNLAGNQFT-GPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNHLG   82 (258)
Q Consensus        26 ~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~   82 (258)
                      .++.++.+++ ..+|..+  -.++++|+|++|.+..+... |..+++|+.|+|.+|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5666666554 1344332  24578888888888776665 677788888888888664

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=89.59  E-value=0.78  Score=29.18  Aligned_cols=47  Identities=11%  Similarity=0.066  Sum_probs=29.8

Q ss_pred             cccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecc
Q 048125            8 QLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKN   56 (258)
Q Consensus         8 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~   56 (258)
                      .++ .+....+.+|.+|+.+.|... ++.+....|.+|.+|+.+.+.+.
T Consensus         7 ~vt-~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            7 PVV-GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCC-SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred             ccC-EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence            445 566666667777777777643 44455556677777777777554

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=84.57  E-value=4.2  Score=25.73  Aligned_cols=39  Identities=18%  Similarity=0.136  Sum_probs=19.8

Q ss_pred             ccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecC
Q 048125          143 SGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNG  182 (258)
Q Consensus       143 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  182 (258)
                      .+|..+++|+++.+..+ +..+...+|..+.+|+.+.+.+
T Consensus        14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~   52 (100)
T 2lz0_A           14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG   52 (100)
T ss_dssp             CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred             HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence            34455555555555543 2224445555555555555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	258
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.002
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-15
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-12
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	7e-07
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	4e-05
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	9e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.004

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.1 bits (178), Expect = 1e-15
 Identities = 54/249 (21%), Positives = 92/249 (36%), Gaps = 20/249 (8%)

Query: 12  SLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVP-SLENLHK 70
            +P DL    P+   L+L  N+ T        N  NL  L++  N  S   P +   L K
Sbjct: 24  KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 80

Query: 71  LQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGI- 129
           L+R+ +S+N L    EK               + L++ +N    +        +  + + 
Sbjct: 81  LERLYLSKNQLKELPEKMPKTL----------QELRVHENEITKVRKSVFNGLNQMIVVE 130

Query: 130 LSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEI 189
           L     +  G      + +  L  + ++    T+ IP  +     L  L L+GNK     
Sbjct: 131 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITKVD 187

Query: 190 PSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSI 249
            +S+  L  L  L  + N +      SL    +L  L L NN L   +P  +     +  
Sbjct: 188 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQ- 245

Query: 250 YLDLSQNQL 258
            + L  N +
Sbjct: 246 VVYLHNNNI 254

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.6 bits (148), Expect = 1e-11
 Identities = 43/255 (16%), Positives = 82/255 (32%), Gaps = 29/255 (11%)

Query: 3   DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKV 62
           D   N++      D    L NL  L L  N+ +   P + +    L  L + KN      
Sbjct: 37  DLQNNKITEIKDGDFK-NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 95

Query: 63  PSLENLHKL-----------------QRVIISQNHLGNYGEKDNLEFVNSLVNASRLELL 105
             +    +                      +    LG    K +     +     +L  +
Sbjct: 96  EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 155

Query: 106 QISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRI 165
           +I+D N   +           L  L +  N++     + L+ L NL  L LS N  ++  
Sbjct: 156 RIADTNITTIPQ----GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD 211

Query: 166 PGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEG------SIPSSLGK 219
            GS+ +   L+      N  L ++P  + +   +  +    N +          P    K
Sbjct: 212 NGSLANTPHLRE-LHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK 270

Query: 220 CQNLIVLDLYNNNLS 234
             +   + L++N + 
Sbjct: 271 KASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 26/185 (14%), Positives = 54/185 (29%), Gaps = 19/185 (10%)

Query: 27  LNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGE 86
           L     + +G    +      L  + I     +     L     L  + +  N +     
Sbjct: 131 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDA 188

Query: 87  KDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLR 146
                   SL   + L  L +S N+   +   ++ N            N     +P GL 
Sbjct: 189 -------ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL--RELHLNNNKLVKVPGGLA 239

Query: 147 NLVNLELLDLSGNQFTS------RIPGSIGDLQKLQMLGLNGNK--FLGEIPSSIGNLTL 198
           +   ++++ L  N  ++        PG          + L  N   +    PS+   + +
Sbjct: 240 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 299

Query: 199 LMTLN 203
              + 
Sbjct: 300 RAAVQ 304

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.6 bits (171), Expect = 7e-15
 Identities = 46/247 (18%), Positives = 81/247 (32%), Gaps = 11/247 (4%)

Query: 12  SLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKL 71
           ++P  +       + + L GN+ +     S     NL  L +  N  +            
Sbjct: 25  AVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA-----AAF 76

Query: 72  QRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILS 131
             + + +    +   +       +     RL  L +        L   +      L  L 
Sbjct: 77  TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD-RCGLQELGPGLFRGLAALQYLY 135

Query: 132 VAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPS 191
           + +N L        R+L NL  L L GN+ +S    +   L  L  L L+ N+     P 
Sbjct: 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195

Query: 192 SIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYL 251
           +  +L  LMTL    N L      +L   + L  L L +N       +    L +     
Sbjct: 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA--RPLWAWLQKF 253

Query: 252 DLSQNQL 258
             S +++
Sbjct: 254 RGSSSEV 260

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 2e-06
 Identities = 31/162 (19%), Positives = 59/162 (36%), Gaps = 14/162 (8%)

Query: 2   FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGK 61
                N LQ  LP D    L NL  L L GN+ +     +     +L  L++ +N  +  
Sbjct: 134 LYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192

Query: 62  VP-SLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAV 120
            P +  +L +L  + +  N+L     +              L+ L+++DN +        
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA-------LQYLRLNDNPWVCDCRAR- 244

Query: 121 GNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFT 162
                 L     + +++  ++P  L      +L  L+ N   
Sbjct: 245 -PLWAWLQKFRGSSSEVPCSLPQRLAGR---DLKRLAANDLQ 282

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (151), Expect = 3e-12
 Identities = 39/189 (20%), Positives = 60/189 (31%), Gaps = 18/189 (9%)

Query: 12  SLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIG--KNGFSGKVPSLENLH 69
           +LP DL     +   L+L+ N        ++   + L +L +   +        +L  L 
Sbjct: 24  ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLG 80

Query: 70  KLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLEL------------LQISDNNFGGMLP 117
            L         L   G+      V  +       L                  N    LP
Sbjct: 81  TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140

Query: 118 EAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQM 177
             +   + +L  LS+A N L       L  L NL+ L L  N   + IP        L  
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPF 199

Query: 178 LGLNGNKFL 186
             L+GN +L
Sbjct: 200 AFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 1e-05
 Identities = 39/182 (21%), Positives = 55/182 (30%), Gaps = 47/182 (25%)

Query: 122 NFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQ--------------------- 160
           +      IL ++EN L+    + L     L  L+L   +                     
Sbjct: 28  DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHN 87

Query: 161 ------------------------FTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNL 196
                                    TS   G++  L +LQ L L GN+     P  +   
Sbjct: 88  QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147

Query: 197 TLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQN 256
             L  L+ A N L       L   +NL  L L  N+L  TIP    G   L  +  L  N
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLP-FAFLHGN 205

Query: 257 QL 258
             
Sbjct: 206 PW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 2e-04
 Identities = 12/66 (18%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 192 SIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYL 251
            +  +   + +N  +  L  ++P  L K  +  +L L  N L     + ++  + L+  L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLT-QL 60

Query: 252 DLSQNQ 257
           +L + +
Sbjct: 61  NLDRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 9/59 (15%), Positives = 22/59 (37%), Gaps = 3/59 (5%)

Query: 146 RNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNF 204
             + +   ++      T+ +P  +   +   +L L+ N       +++   T L  LN 
Sbjct: 7   SKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 62.7 bits (151), Expect = 5e-12
 Identities = 53/238 (22%), Positives = 86/238 (36%), Gaps = 48/238 (20%)

Query: 19  FTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQ 78
             L NLE L    NQ +   P+ I   +NL EL +  N     + +L +L  L  + ++ 
Sbjct: 194 AKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD-IGTLASLTNLTDLDLAN 250

Query: 79  NHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLF 138
           N + N         +  L   ++L  L++  N    + P      +    + ++  N+  
Sbjct: 251 NQISN---------LAPLSGLTKLTELKLGANQISNISP-----LAGLTALTNLELNENQ 296

Query: 139 GNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTL 198
               S + NL NL  L L  N  +   P  +  L KLQ L    NK              
Sbjct: 297 LEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKV------------- 341

Query: 199 LMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQN 256
                        S  SSL    N+  L   +N +S   P  +  L+ ++  L L+  
Sbjct: 342 -------------SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRIT-QLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 58.1 bits (139), Expect = 2e-10
 Identities = 45/174 (25%), Positives = 65/174 (37%), Gaps = 32/174 (18%)

Query: 105 LQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSR 164
           L  ++N    + P       T L  LS+  NQL       L +L NL  LDL+ NQ ++ 
Sbjct: 202 LIATNNQISDITPL---GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNL 256

Query: 165 IPGSIGDLQKLQMLGLNGNKFLGEIP--------------------SSIGNLTLLMTLNF 204
            P  +  L KL  L L  N+     P                    S I NL  L  L  
Sbjct: 257 AP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL 314

Query: 205 AENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
             N +    P  +     L  L   NN +S    S +  L++++ +L    NQ+
Sbjct: 315 YFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNIN-WLSAGHNQI 363

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.0 bits (118), Expect = 1e-07
 Identities = 48/224 (21%), Positives = 77/224 (34%), Gaps = 14/224 (6%)

Query: 21  LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVP------SLENLHKLQRV 74
           L NL  +N + NQ T   P  + N + L ++++  N  +   P               ++
Sbjct: 65  LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 122

Query: 75  IISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAE 134
                              N++ + S L  L        G     +   +    +  +  
Sbjct: 123 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDI 182

Query: 135 NQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIG 194
           +    +  S L  L NLE L  + NQ +   P  I     L  L LNGN+       ++ 
Sbjct: 183 SSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLA 238

Query: 195 NLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIP 238
           +LT L  L+ A N +    P  L     L  L L  N +S   P
Sbjct: 239 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 280

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 59.4 bits (142), Expect = 6e-11
 Identities = 48/264 (18%), Positives = 89/264 (33%), Gaps = 25/264 (9%)

Query: 16  DLGFTLPNLEGLNLAGNQFTG--PIPVSISNASNLRELMIGKNGF--SGKVPSLENLHKL 71
           D       +  L+L+G       PIP S++N   L  L IG          P++  L +L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 72  QRVIISQNHLGNYGEKDNLEFV-----------------NSLVNASRLELLQISDNNFGG 114
             + I+  ++         +                    S+ +   L  +    N   G
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 115 MLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQK 174
            +P++ G+FS     ++++ N+L G IP    NL    +                 D   
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 175 LQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLS 234
            ++     +         +      + L    N + G++P  L + + L  L++  NNL 
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLR--NNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 235 GTIPSEVIGLSSLSIYLDLSQNQL 258
           G IP +   L         + N+ 
Sbjct: 282 GEIP-QGGNLQRFD-VSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 49.4 bits (116), Expect = 1e-07
 Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 2/55 (3%)

Query: 2   FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKN 56
            D   N++ G+LP  L   L  L  LN++ N   G IP    N           N
Sbjct: 249 LDLRNNRIYGTLPQGLT-QLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 49.0 bits (115), Expect = 2e-07
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 106 QISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRI 165
            + +N   G LP+ +      L  L+V+ N L G IP    NL   ++   + N+     
Sbjct: 250 DLRNNRIYGTLPQGLTQL-KFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGS 307

Query: 166 P 166
           P
Sbjct: 308 P 308

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.1 bits (123), Expect = 2e-08
 Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 9/89 (10%)

Query: 135 NQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIG 194
           N     I S      +LE L++S N+    +P     L++L     + N  L E+P    
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLERLI---ASFNH-LAEVPELPQ 324

Query: 195 NLTLLMTLNFAENMLEGSIPSSLGKCQNL 223
           NL     L+   N L    P      ++L
Sbjct: 325 NLK---QLHVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.7 bits (114), Expect = 2e-07
 Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 9/94 (9%)

Query: 156 LSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPS 215
              N  ++ I         L+ L ++ NK L E+P+    L     L  + N L   +P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNK-LIELPALPPRLE---RLIASFNHLA-EVPE 321

Query: 216 SLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSI 249
                QNL  L +  N L    P     +  L +
Sbjct: 322 LP---QNLKQLHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 4e-04
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 5/49 (10%)

Query: 150 NLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTL 198
               L+L+    +S +P     L+ L     + N  L E+P    +L  
Sbjct: 39  QAHELELNNLGLSS-LPELPPHLESLV---ASCNS-LTELPELPQSLKS 82

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 9/70 (12%)

Query: 3   DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKV 62
           +   N+L   LP+      P LE L  + N     +P       NL++L +  N      
Sbjct: 290 NVSNNKLI-ELPA----LPPRLERLIASFNHLAE-VPELP---QNLKQLHVEYNPLREFP 340

Query: 63  PSLENLHKLQ 72
              E++  L+
Sbjct: 341 DIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.0 bits (81), Expect = 0.004
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 7/63 (11%)

Query: 19  FTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQ 78
              P+LE LN++ N+    +P        L  L+   N  + +VP L     L+++ +  
Sbjct: 281 DLPPSLEELNVSNNKLIE-LPALP---PRLERLIASFNHLA-EVPEL--PQNLKQLHVEY 333

Query: 79  NHL 81
           N L
Sbjct: 334 NPL 336

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (120), Expect = 3e-08
 Identities = 30/248 (12%), Positives = 73/248 (29%), Gaps = 7/248 (2%)

Query: 7   NQLQGSLPSDLGFTLPNLEGLNLAGNQFTG-PIPVSISNASNLRELMIGKNGFSGKVP-S 64
            +     P    F+   ++ ++L+ +      +   +S  S L+ L +     S  +  +
Sbjct: 31  PRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT 90

Query: 65  LENLHKLQRVIISQNH-LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNF 123
           L     L R+ +S       +  +  L   + L   +       ++ +    +       
Sbjct: 91  LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 150

Query: 124 STRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGN 183
           +           Q         R    + L         +        L  LQ L L+  
Sbjct: 151 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 210

Query: 184 KFL-GEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVI 242
             +  E    +G +  L TL     + +G++        +   L +  ++ +      + 
Sbjct: 211 YDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPH---LQINCSHFTTIARPTIG 267

Query: 243 GLSSLSIY 250
              +  I+
Sbjct: 268 NKKNQEIW 275

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 2e-05
 Identities = 25/132 (18%), Positives = 51/132 (38%), Gaps = 8/132 (6%)

Query: 105 LQISDNNFGGMLPEAVGNFSTR-LGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFT- 162
           L ++  N     P+  G   ++ +       + +   +         ++ +DLS +    
Sbjct: 5   LDLTGKNL---HPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIEV 60

Query: 163 SRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFA--ENMLEGSIPSSLGKC 220
           S + G +    KLQ L L G +    I +++   + L+ LN +      E ++ + L  C
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 221 QNLIVLDLYNNN 232
             L  L+L    
Sbjct: 121 SRLDELNLSWCF 132

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 3e-05
 Identities = 34/224 (15%), Positives = 67/224 (29%), Gaps = 6/224 (2%)

Query: 3   DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKV 62
           D   + ++ S    +      L+ L+L G + + PI  +++  SNL  L +       + 
Sbjct: 52  DLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF 111

Query: 63  PSLENLHKLQRVIISQNHLGNYG--EKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAV 120
                L    R+             +   +   +     ++L L     N     L   V
Sbjct: 112 ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV 171

Query: 121 GNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSG-NQFTSRIPGSIGDLQKLQMLG 179
                 + +       L  +       L  L+ L LS            +G++  L+ L 
Sbjct: 172 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ 231

Query: 180 LNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNL 223
           + G    G +      L     L    +        ++G  +N 
Sbjct: 232 VFGIVPDGTLQLLKEALP---HLQINCSHFTTIARPTIGNKKNQ 272

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 3e-07
 Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 25/114 (21%)

Query: 149 VNLELLDLSGNQFT-SRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAEN 207
           ++++ LD+   + + +R    +  LQ+ Q++ L+           I              
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDI-------------- 47

Query: 208 MLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVI-GLSSLSI---YLDLSQNQ 257
                  S+L     L  L+L +N L       V+ GL + S     L L    
Sbjct: 48  ------SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 6e-06
 Identities = 15/93 (16%), Positives = 28/93 (30%), Gaps = 9/93 (9%)

Query: 102 LELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQL----FGNIPSGLRNLVNLELLDLS 157
           ++ L I            +     +  ++ + +  L      +I S LR    L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 158 GNQFTSRIPGSIGDL-----QKLQMLGLNGNKF 185
            N+        +         K+Q L L     
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 9e-06
 Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 9/88 (10%)

Query: 118 EAVGNFSTRLGILSVAENQL----FGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQ 173
           + +G   + L +L +A+  +      ++ + L    +L  LDLS N         + +  
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 174 K-----LQMLGLNGNKFLGEIPSSIGNL 196
           +     L+ L L    +  E+   +  L
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 3e-05
 Identities = 14/100 (14%), Positives = 26/100 (26%), Gaps = 13/100 (13%)

Query: 140 NIPSGLRNLVNLELLDLSGNQFTSRIPGSIGD----LQKLQMLGLNGNKFLGEIPSSIG- 194
                 +    L +L L+    +     S+         L+ L L+ N         +  
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419

Query: 195 ----NLTLLMTLNFAENMLEGSIPSSLG----KCQNLIVL 226
                  LL  L   +      +   L        +L V+
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 2e-04
 Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 9/81 (11%)

Query: 173 QKLQMLGLNGNKF----LGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGK-----CQNL 223
             L++L L            + +++     L  L+ + N L  +    L +        L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 224 IVLDLYNNNLSGTIPSEVIGL 244
             L LY+   S  +   +  L
Sbjct: 429 EQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 2e-04
 Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 12/98 (12%)

Query: 43  SNASNLRELMIGKNGFSGKVPS-----LENLHKLQRVIISQNHLGNYGEKDNLEFVNSL- 96
              S LR L +     S    S     L   H L+ + +S N LG+ G     + V S+ 
Sbjct: 366 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL---QLVESVR 422

Query: 97  VNASRLELLQISDNNFGGMLPEAVGNFSTR---LGILS 131
                LE L + D  +   + + +         L ++S
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 2e-04
 Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 8/72 (11%)

Query: 195 NLTLLMTLNFAENMLEG----SIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGL----SS 246
             ++L  L  A+  +      S+ ++L    +L  LDL NN L      +++        
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 247 LSIYLDLSQNQL 258
           L   L L     
Sbjct: 427 LLEQLVLYDIYW 438

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 5e-04
 Identities = 15/114 (13%), Positives = 34/114 (29%), Gaps = 8/114 (7%)

Query: 69  HKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNF---ST 125
                + +  ++                   S L +L ++D +       ++      + 
Sbjct: 338 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH 397

Query: 126 RLGILSVAENQLFGNIPSGL-----RNLVNLELLDLSGNQFTSRIPGSIGDLQK 174
            L  L ++ N L       L     +    LE L L    ++  +   +  L+K
Sbjct: 398 SLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 7e-04
 Identities = 10/96 (10%), Positives = 35/96 (36%), Gaps = 8/96 (8%)

Query: 23  NLEGLNLAGNQFT-GPIPVSISNASNLRELMIGKNGFSGK-----VPSLENLHKLQRVII 76
           +++ L++   + +       +      + + +   G +         +L     L  + +
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 77  SQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNF 112
             N LG+ G    L+ + +   + +++ L + +   
Sbjct: 63  RSNELGDVGVHCVLQGLQT--PSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 0.002
 Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 4/64 (6%)

Query: 2  FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTG----PIPVSISNASNLRELMIGKNG 57
           D    +L  +  ++L   L   + + L     T      I  ++     L EL +  N 
Sbjct: 7  LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 58 FSGK 61
              
Sbjct: 67 LGDV 70

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (82), Expect = 0.003
 Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 13/87 (14%)

Query: 3   DFPFNQLQGSLPSDLGFTL---PNLEGLNLAGNQFTGPIPVSISNA-----SNLRELMIG 54
                 +  S  S L  TL    +L  L+L+ N       + +  +       L +L++ 
Sbjct: 375 WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLY 434

Query: 55  KNGFSGKVPSLENLHKLQRVIISQNHL 81
              +S ++        LQ +   +  L
Sbjct: 435 DIYWSEEMEDR-----LQALEKDKPSL 456

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.1 bits (106), Expect = 6e-07
 Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 6/108 (5%)

Query: 129 ILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGE 188
           +L +A   L   +   L  L+ +  LDLS N+  +  P ++  L+ L++L    +    E
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVL--QASDNALE 56

Query: 189 IPSSIGNLTLLMTLNFAENMLEG-SIPSSLGKCQNLIVLDLYNNNLSG 235
               + NL  L  L    N L+  +    L  C  L++L+L  N+L  
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 1e-05
 Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 5/105 (4%)

Query: 154 LDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSI 213
           L L+    T      +  L  +  L L+ N+ L  +P ++  L  L  L  ++N      
Sbjct: 3   LHLAHKDLTV--LCHLEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNA--LEN 57

Query: 214 PSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL 258
              +     L  L L NN L  +   + +      + L+L  N L
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (109), Expect = 7e-07
 Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 4/55 (7%)

Query: 138 FGNIPSG-LRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPS 191
              +P+          +LD+S  +  S     + +L+KL+       K   ++P+
Sbjct: 189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 1e-05
 Identities = 29/228 (12%), Positives = 60/228 (26%), Gaps = 9/228 (3%)

Query: 12  SLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKL 71
            +PSDL     N   L     +       + S   +L ++ I +N     + +    +  
Sbjct: 22  EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP 78

Query: 72  QRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILS 131
           +   I      N    +   F N       L     +           + +    L  + 
Sbjct: 79  KLHEIRIEKANNLLYINPEAFQNLPNLQYLL---ISNTGIKHLPDVHKIHSLQKVLLDIQ 135

Query: 132 VAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPS 191
              N       S +       +L L+ N        +    Q  ++   + N        
Sbjct: 136 DNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPND 195

Query: 192 SIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPS 239
                +  + L+ +   +       L   + L     YN      +P+
Sbjct: 196 VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL---KKLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 2e-04
 Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 3/65 (4%)

Query: 2   FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGK 61
            +   N     LP+D+         L+++  +        + N   LR           K
Sbjct: 181 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL---KK 237

Query: 62  VPSLE 66
           +P+LE
Sbjct: 238 LPTLE 242

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.3 bits (103), Expect = 5e-06
 Identities = 34/221 (15%), Positives = 69/221 (31%), Gaps = 16/221 (7%)

Query: 19  FTLPNLEG---LNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVI 75
           F  P L     +    +  T  +  + ++   +  L     G +  +  ++ L+ L  + 
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLE 69

Query: 76  ISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVG-NFSTRLGILSVAE 134
           +  N + +     NL  +  L  +        +      +    +     T +  L+   
Sbjct: 70  LKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLS 129

Query: 135 -----NQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEI 189
                      I +         L  LS           + +L KL  L  + NK     
Sbjct: 130 NLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS 189

Query: 190 PSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYN 230
           P  + +L  L+ ++   N +    P  L    NL ++ L N
Sbjct: 190 P--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 1e-05
 Identities = 21/99 (21%), Positives = 30/99 (30%), Gaps = 4/99 (4%)

Query: 136 QLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGN 195
           +L         N V    LDL G +    I      L +   +  + N+           
Sbjct: 6   ELIEQAAQ-YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEI--RKLDGFPL 61

Query: 196 LTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLS 234
           L  L TL    N +            +L  L L NN+L 
Sbjct: 62  LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 100

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.9 bits (94), Expect = 4e-05
 Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 4/103 (3%)

Query: 138 FGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLT 197
                     L  L+ L+L  NQ +  +PGS   L  L  L L  N F            
Sbjct: 91  KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC-NCHLAWFAE 149

Query: 198 LLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSE 240
            L   +          PS +   +++ + DL ++    +  + 
Sbjct: 150 WLRKKSLNGGAARCGAPSKV---RDVQIKDLPHSEFKCSSENS 189

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 37.0 bits (84), Expect = 9e-04
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 10/71 (14%)

Query: 116 LPEAVGNFS--TRLGILSVAENQLFGNIP------SGLRNLVNLELLDLSGNQFTSRIPG 167
           + +A+  F     +      + +L G IP      + L  L   + L LS N     I  
Sbjct: 7   IKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS- 64

Query: 168 SIGDLQKLQML 178
           S+  ++ L++L
Sbjct: 65  SLSGMENLRIL 75

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 36.8 bits (83), Expect = 0.002
 Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 9/77 (11%)

Query: 20  TLPNLEGLNLAGNQFTGPIPVSISNA-----SNLRELMIGKNGFSGKVPSLENLHKLQRV 74
               L+ L L  N+       ++         +L  L +  N FS +   ++ + ++   
Sbjct: 271 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV--- 327

Query: 75  IISQNHLGNYGEKDNLE 91
             S    G   E D++E
Sbjct: 328 -FSTRGRGELDELDDME 343

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 36.4 bits (82), Expect = 0.002
 Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 6/69 (8%)

Query: 147 NLVNLELLDLSGNQFTSRIPGSIGD-----LQKLQMLGLNGNKFLGEIPSSIGNLTLLMT 201
             + L+ L L  N+       ++       +  L  L LNGN+F  E    +  +  + +
Sbjct: 271 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF-SEEDDVVDEIREVFS 329

Query: 202 LNFAENMLE 210
                 + E
Sbjct: 330 TRGRGELDE 338

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 32/188 (17%), Positives = 55/188 (29%), Gaps = 35/188 (18%)

Query: 21  LPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNH 80
           L       L     T  +  S ++   +  L   + G    +  +E L+ L ++  S N 
Sbjct: 17  LAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIK-SIDGVEYLNNLTQINFSNNQ 73

Query: 81  LGNYGEKDNL----------EFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGIL 130
           L +     NL            +  +   + L  L         +         T L  L
Sbjct: 74  LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 133

Query: 131 SVAENQLFGNI--------------------PSGLRNLVNLELLDLSGNQFTSRIPGSIG 170
            ++ N +                           L NL  LE LD+S N+ +      + 
Sbjct: 134 ELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD--ISVLA 191

Query: 171 DLQKLQML 178
            L  L+ L
Sbjct: 192 KLTNLESL 199

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 34/215 (15%), Positives = 76/215 (35%), Gaps = 26/215 (12%)

Query: 19  FTLPNLE---GLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVI 75
           F+          NL     T  +  + +  +++ +++   +     V  ++ L  + ++ 
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQGIQYLPNVTKLF 74

Query: 76  ISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAEN 135
           ++ N L +     NL+ +  L           S  +   +   ++ +             
Sbjct: 75  LNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHN------------ 122

Query: 136 QLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGN 195
               +  +GL +L  LE L L  N+ T     S              +  + +I   +  
Sbjct: 123 --GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLS---LEDNQISDIV-PLAG 176

Query: 196 LTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYN 230
           LT L  L  ++N +      +L   +NL VL+L++
Sbjct: 177 LTKLQNLYLSKNHISD--LRALAGLKNLDVLELFS 209

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	258
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.88
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.85
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.81
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.78
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.78
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.77
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.72
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.71
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.65
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.65
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.65
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.59
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.56
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.55
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.55
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.55
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.5
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.49
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.43
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.42
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.3
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.26
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.23
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.32
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.22
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.18
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.02
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.65
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.45

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=5.6e-29  Score=197.30  Aligned_cols=244  Identities=28%  Similarity=0.431  Sum_probs=205.5

Q ss_pred             CCCCcCcccC--CCCcchhccCCCCceEEecC-CcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEec
Q 048125            2 FDFPFNQLQG--SLPSDLGFTLPNLEGLNLAG-NQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIIS   77 (258)
Q Consensus         2 l~~~~~~~~~--~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~   77 (258)
                      |+++++++++  .+|..++ ++++|++|++.+ +.+.+.+|..+.++++|++|++++|.+...... +..+..|+.+++.
T Consensus        55 L~L~~~~l~g~~~lp~~l~-~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~  133 (313)
T d1ogqa_          55 LDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS  133 (313)
T ss_dssp             EEEECCCCSSCEECCGGGG-GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECC
T ss_pred             EECCCCCCCCCCCCChHHh-cCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccc
Confidence            5677888876  4788887 599999999986 678888899999999999999999998776555 7788899999999


Q ss_pred             cccccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEee
Q 048125           78 QNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLS  157 (258)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  157 (258)
                      +|.+..       .++..+..++.++.+++++|.+.+.+|..++.....++.+.+..|.+....+..+..+. ...+++.
T Consensus       134 ~N~~~~-------~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~-~~~l~l~  205 (313)
T d1ogqa_         134 YNALSG-------TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS  205 (313)
T ss_dssp             SSEEES-------CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred             cccccc-------cCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence            988775       45567888999999999999988788888877754457888888887766666666554 4478899


Q ss_pred             CCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCcccccc
Q 048125          158 GNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTI  237 (258)
Q Consensus       158 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~  237 (258)
                      .+...+..+..+..+++++.+++.++.+.+.+ ..+..+++|+.|++++|.+++.+|..++++++|++|++++|+++|.+
T Consensus       206 ~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~i  284 (313)
T d1ogqa_         206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI  284 (313)
T ss_dssp             SSEEEECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred             cccccccccccccccccccccccccccccccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccC
Confidence            88887778888888999999999999988554 46788899999999999999999999999999999999999999888


Q ss_pred             ccccccccCcceeEecCCCC
Q 048125          238 PSEVIGLSSLSIYLDLSQNQ  257 (258)
Q Consensus       238 ~~~~~~~~~l~~~L~l~~n~  257 (258)
                      |. +..++++ ..+++++|+
T Consensus       285 P~-~~~L~~L-~~l~l~~N~  302 (313)
T d1ogqa_         285 PQ-GGNLQRF-DVSAYANNK  302 (313)
T ss_dssp             CC-STTGGGS-CGGGTCSSS
T ss_pred             CC-cccCCCC-CHHHhCCCc
Confidence            85 5778888 999999986

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=2.9e-24  Score=169.32  Aligned_cols=246  Identities=26%  Similarity=0.317  Sum_probs=173.9

Q ss_pred             CCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEeccccc
Q 048125            3 DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNHL   81 (258)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~   81 (258)
                      +.++.+++ ++|..+.   +++++|++++|.++...+..|.++++|++|++++|.+....+. +..+++|+.|++++|.+
T Consensus        16 ~C~~~~L~-~lP~~l~---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l   91 (305)
T d1xkua_          16 QCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL   91 (305)
T ss_dssp             ECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC
T ss_pred             EecCCCCC-ccCCCCC---CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCcc
Confidence            44556677 8888653   5788999999988866556788889999999999888876554 78888999999998887


Q ss_pred             cCcCCCccc-------------h-hhhccccCCCCcEEEeeccccc--ccccccccccccccceEEecccccCCccCccC
Q 048125           82 GNYGEKDNL-------------E-FVNSLVNASRLELLQISDNNFG--GMLPEAVGNFSTRLGILSVAENQLFGNIPSGL  145 (258)
Q Consensus        82 ~~~~~~~~~-------------~-~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~  145 (258)
                      +.++.....             . ....+.....++.+....+...  ...+..+.. .++++.+++.+|.+. .++.. 
T Consensus        92 ~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~-l~~L~~l~l~~n~l~-~l~~~-  168 (305)
T d1xkua_          92 KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG-MKKLSYIRIADTNIT-TIPQG-  168 (305)
T ss_dssp             SBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGG-CTTCCEEECCSSCCC-SCCSS-
T ss_pred             CcCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCcccccc-ccccCccccccCCcc-ccCcc-
Confidence            754322100             0 0001222333444444443221  011112222 246788888887765 33433 


Q ss_pred             CCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcE
Q 048125          146 RNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIV  225 (258)
Q Consensus       146 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  225 (258)
                       ..+++++|++.+|......+..|..++.++.|++++|.+.+..+..+..+++|++|++++|.++ .+|..+..+++|++
T Consensus       169 -~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~  246 (305)
T d1xkua_         169 -LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQV  246 (305)
T ss_dssp             -CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCE
T ss_pred             -cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCE
Confidence             2568899999998887777888888999999999999998777888888999999999999988 56778888999999


Q ss_pred             EeccCCccccccccc------cccccCcceeEecCCCCC
Q 048125          226 LDLYNNNLSGTIPSE------VIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       226 L~l~~~~l~~~~~~~------~~~~~~l~~~L~l~~n~~  258 (258)
                      |++++|+|+......      ....+++ ..|+|++|++
T Consensus       247 L~Ls~N~i~~i~~~~f~~~~~~~~~~~L-~~L~L~~N~~  284 (305)
T d1xkua_         247 VYLHNNNISAIGSNDFCPPGYNTKKASY-SGVSLFSNPV  284 (305)
T ss_dssp             EECCSSCCCCCCTTSSSCSSCCTTSCCC-SEEECCSSSS
T ss_pred             EECCCCccCccChhhccCcchhcccCCC-CEEECCCCcC
Confidence            999999998432222      3355677 8999999874

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=2.1e-24  Score=170.14  Aligned_cols=217  Identities=23%  Similarity=0.314  Sum_probs=171.3

Q ss_pred             CCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEeccccccCcCCCccchhhhccccCCC
Q 048125           23 NLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASR  101 (258)
Q Consensus        23 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~  101 (258)
                      ..++++..+.+++ .+|..+.  +.+++|++++|.+...... |..+++|++|++++|.+....       +..+..+++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~-------~~~f~~l~~   80 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS-------PGAFAPLVK   80 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBC-------TTTTTTCTT
T ss_pred             cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccc-------hhhhhCCCc
Confidence            4678888877777 4566653  6899999999999888764 889999999999999988643       335778999


Q ss_pred             CcEEEeecccccccccccccccccccceEEecccccC--------------------------CccCccCCCCCcccEEE
Q 048125          102 LELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLF--------------------------GNIPSGLRNLVNLELLD  155 (258)
Q Consensus       102 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~--------------------------~~~~~~~~~~~~L~~L~  155 (258)
                      |+.|++++|.+. .+|....   ..+..|....+.+.                          ...+..+..+++|++++
T Consensus        81 L~~L~l~~n~l~-~l~~~~~---~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~  156 (305)
T d1xkua_          81 LERLYLSKNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR  156 (305)
T ss_dssp             CCEEECCSSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEE
T ss_pred             cCEecccCCccC-cCccchh---hhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccc
Confidence            999999999876 4443322   23344444333221                          11233455677899999


Q ss_pred             eeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCcccc
Q 048125          156 LSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSG  235 (258)
Q Consensus       156 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~  235 (258)
                      +++|.+.. .+..  ..+++++|++.+|......+..+..++.++.|++++|.+.+..+..+..+++|+.|++++|+|+ 
T Consensus       157 l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-  232 (305)
T d1xkua_         157 IADTNITT-IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-  232 (305)
T ss_dssp             CCSSCCCS-CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-
T ss_pred             cccCCccc-cCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-
Confidence            99998874 4433  3578999999999988788888999999999999999999888888999999999999999999 


Q ss_pred             ccccccccccCcceeEecCCCCC
Q 048125          236 TIPSEVIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       236 ~~~~~~~~~~~l~~~L~l~~n~~  258 (258)
                      .+|.++..++.| ++|+|++|+|
T Consensus       233 ~lp~~l~~l~~L-~~L~Ls~N~i  254 (305)
T d1xkua_         233 KVPGGLADHKYI-QVVYLHNNNI  254 (305)
T ss_dssp             SCCTTTTTCSSC-CEEECCSSCC
T ss_pred             ccccccccccCC-CEEECCCCcc
Confidence            788899999999 9999999975

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.93  E-value=4.9e-25  Score=174.42  Aligned_cols=225  Identities=28%  Similarity=0.445  Sum_probs=192.9

Q ss_pred             CCceEEecCCcccc--cccccccCCCCCcEEEeec-ccCCC-CCCCccccCCcceEEeccccccCcCCCccchhhhcccc
Q 048125           23 NLEGLNLAGNQFTG--PIPVSISNASNLRELMIGK-NGFSG-KVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVN   98 (258)
Q Consensus        23 ~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~   98 (258)
                      +++.|++.++.+.+  .+|..+.++++|++|++++ |.+.+ .+..+.++++|++|++++|.+...       ....+..
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~-------~~~~~~~  123 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-------IPDFLSQ  123 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-------CCGGGGG
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccccc-------ccccccc
Confidence            58999999998886  4688999999999999987 66664 445599999999999999998763       3346778


Q ss_pred             CCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcc-cEEEeeCCccccccCCcccCccCCcE
Q 048125           99 ASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNL-ELLDLSGNQFTSRIPGSIGDLQKLQM  177 (258)
Q Consensus        99 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L-~~L~l~~~~~~~~~~~~~~~~~~L~~  177 (258)
                      +++|+.++++.|.+...+|..+..+ +.++.+++++|.+...+|..+..+..+ +.+++++|.+.+..+..+..+. ...
T Consensus       124 ~~~L~~l~l~~N~~~~~~p~~l~~l-~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~-~~~  201 (313)
T d1ogqa_         124 IKTLVTLDFSYNALSGTLPPSISSL-PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAF  201 (313)
T ss_dssp             CTTCCEEECCSSEEESCCCGGGGGC-TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSE
T ss_pred             hhhhcccccccccccccCchhhccC-cccceeeccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence            8999999999999887888888777 589999999998876778877777665 8899999999887787777765 457


Q ss_pred             EEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccccccccCcceeEecCCCC
Q 048125          178 LGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQ  257 (258)
Q Consensus       178 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~  257 (258)
                      +++..+...+..|..+..+++++.+++.+|.+.+.++ .++.+++|+.|++++|++++.+|.++..+++| ++|+|++|.
T Consensus       202 l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L-~~L~Ls~N~  279 (313)
T d1ogqa_         202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL-HSLNVSFNN  279 (313)
T ss_dssp             EECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTC-CEEECCSSE
T ss_pred             ccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCC-CEEECcCCc
Confidence            9999998888888889999999999999999986544 57889999999999999999999999999999 999999996


Q ss_pred             C
Q 048125          258 L  258 (258)
Q Consensus       258 ~  258 (258)
                      |
T Consensus       280 l  280 (313)
T d1ogqa_         280 L  280 (313)
T ss_dssp             E
T ss_pred             c
Confidence            4

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.5e-24  Score=169.20  Aligned_cols=221  Identities=23%  Similarity=0.231  Sum_probs=161.2

Q ss_pred             CCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEecc-cc
Q 048125            3 DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQ-NH   80 (258)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~-~~   80 (258)
                      +.++++++ ++|..+.   .++++|++++|.++...+.+|.++++|++|+++++.+...... +..+..++.+.... +.
T Consensus        17 ~c~~~~L~-~iP~~ip---~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          17 SCPQQGLQ-AVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             ECCSSCCS-SCCTTCC---TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EcCCCCCC-ccCCCCC---CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            44566777 7777653   4678888888888866666788888888888888888765555 56667777776543 34


Q ss_pred             ccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCc
Q 048125           81 LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQ  160 (258)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  160 (258)
                      +...       ....+..+++|++|+++.|.+. .++........+++.+++.+|.+....+..+...+++++|++++|.
T Consensus        93 ~~~l-------~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~  164 (284)
T d1ozna_          93 LRSV-------DPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR  164 (284)
T ss_dssp             CCCC-------CTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cccc-------cchhhcccccCCEEecCCcccc-cccccccchhcccchhhhccccccccChhHhccccchhhcccccCc
Confidence            4432       1335677788888888888775 3333333334578888888887775555667777788888888888


Q ss_pred             cccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCcccc
Q 048125          161 FTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSG  235 (258)
Q Consensus       161 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~  235 (258)
                      +....+.+|.++++|+++++++|++.+..|..|+.+++|++|++++|.+.+..+..++.+++|+.+++++|.+..
T Consensus       165 l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             ccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence            876677778888888888888888877777888888888888888888876666777788888888888887763

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.5e-24  Score=169.22  Aligned_cols=222  Identities=23%  Similarity=0.251  Sum_probs=184.1

Q ss_pred             eEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEeccccccCcCCCccchhhhccccCCCCcE
Q 048125           26 GLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLEL  104 (258)
Q Consensus        26 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~  104 (258)
                      ++.+.+++++ .+|..+.  ..+++|++++|.+...+.. |.++++|++|+++++.+.....       ..+..++.++.
T Consensus        15 ~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~-------~~~~~~~~~~~   84 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA-------AAFTGLALLEQ   84 (284)
T ss_dssp             EEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-------TTTTTCTTCCE
T ss_pred             EEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccc-------ccccccccccc
Confidence            4566666666 4565543  5789999999999887765 8899999999999998876432       35566788888


Q ss_pred             EEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCc
Q 048125          105 LQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNK  184 (258)
Q Consensus       105 L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  184 (258)
                      +....+.....++...+..++++++|++++|......+..+...++|+++++++|.+..+.+..|+.+++|+.|++++|.
T Consensus        85 l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~  164 (284)
T d1ozna_          85 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR  164 (284)
T ss_dssp             EECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCc
Confidence            88765543335544444444689999999998875566677888999999999999997778889999999999999999


Q ss_pred             cccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccccccccCcceeEecCCCCC
Q 048125          185 FLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       185 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n~~  258 (258)
                      +....+.+|..+++|+.+++++|.+.+..|..+..+++|+.|++++|++.+..+..|..++++ ++|++++|++
T Consensus       165 l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L-~~L~l~~N~l  237 (284)
T d1ozna_         165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL-QYLRLNDNPW  237 (284)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTC-CEEECCSSCE
T ss_pred             ccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccccccccccccccc-CEEEecCCCC
Confidence            997778899999999999999999998889999999999999999999997777889999999 9999999985

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.8e-23  Score=159.64  Aligned_cols=200  Identities=23%  Similarity=0.224  Sum_probs=152.2

Q ss_pred             cCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEeccccccCcCCCccchhhhcccc
Q 048125           20 TLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVN   98 (258)
Q Consensus        20 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~   98 (258)
                      +...+.++++++.+++ .+|..+.  +.+++|++++|.+...... |..+++|++|++++|.++.++         .+..
T Consensus         8 ~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~---------~~~~   75 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ---------VDGT   75 (266)
T ss_dssp             CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE---------CCSC
T ss_pred             ccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc---------cccc
Confidence            3556677888888887 4565553  5789999999998876654 788889999999998886432         3456


Q ss_pred             CCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEE
Q 048125           99 ASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQML  178 (258)
Q Consensus        99 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  178 (258)
                      +++|++|++++|.+. ..+..+..+ ++++.|+++++.+....+..+..+.+++++++.+|.+....+..+..+++++.+
T Consensus        76 l~~L~~L~Ls~N~l~-~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l  153 (266)
T d1p9ag_          76 LPVLGTLDLSHNQLQ-SLPLLGQTL-PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL  153 (266)
T ss_dssp             CTTCCEEECCSSCCS-SCCCCTTTC-TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccccccccccccccc-ccccccccc-cccccccccccccceeeccccccccccccccccccccceeccccccccccchhc
Confidence            788889999888876 444444444 578888888887765556666777888888888888876667777778888888


Q ss_pred             EecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccc
Q 048125          179 GLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLS  234 (258)
Q Consensus       179 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~  234 (258)
                      ++++|++++..+..|..+++|++|++++|+++ .+|..+..+++|+.|++++|...
T Consensus       154 ~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         154 SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            88888888666677888888888888888887 67777777888888888887665

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.2e-22  Score=156.91  Aligned_cols=193  Identities=22%  Similarity=0.166  Sum_probs=160.5

Q ss_pred             CCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEecccccc
Q 048125            3 DFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLG   82 (258)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~   82 (258)
                      +.++++++ ++|..+.   +++++|++++|.+++..+..|.++++|++|++++|.+.... .+..+++|++|++++|++.
T Consensus        16 ~C~~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~Ls~N~l~   90 (266)
T d1p9ag_          16 NCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ-VDGTLPVLGTLDLSHNQLQ   90 (266)
T ss_dssp             ECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE-CCSCCTTCCEEECCSSCCS
T ss_pred             EccCCCCC-eeCcCcC---cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc-ccccccccccccccccccc
Confidence            56677888 7887653   57999999999999777778999999999999999987543 4678899999999999887


Q ss_pred             CcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccc
Q 048125           83 NYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFT  162 (258)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  162 (258)
                      .        ....+..+++|+.|+++++.+....+ .......+++.+++.+|.+....+..+..++.++++++++|.+.
T Consensus        91 ~--------~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~  161 (266)
T d1p9ag_          91 S--------LPLLGQTLPALTVLDVSFNRLTSLPL-GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (266)
T ss_dssp             S--------CCCCTTTCTTCCEEECCSSCCCCCCS-STTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             c--------cccccccccccccccccccccceeec-cccccccccccccccccccceeccccccccccchhccccccccc
Confidence            4        33456788999999999998874333 33334468999999999887555667778899999999999999


Q ss_pred             cccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEeccccccc
Q 048125          163 SRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLE  210 (258)
Q Consensus       163 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  210 (258)
                      ...+..|..+++|++|++++|+++ .+|+.+..+++|+.|++++|++.
T Consensus       162 ~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            777888999999999999999998 78888888999999999999875

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.88  E-value=2.2e-21  Score=157.10  Aligned_cols=239  Identities=25%  Similarity=0.336  Sum_probs=135.8

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccc
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHL   81 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~   81 (258)
                      |++.++.++ .+. .+. .+++|++|++++|.+++..  .+.++++|++|++++|.+.... .+..+++|+.+++.++.+
T Consensus        49 L~l~~~~I~-~l~-gl~-~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~-~l~~l~~L~~L~~~~~~~  122 (384)
T d2omza2          49 LQADRLGIK-SID-GVE-YLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQI  122 (384)
T ss_dssp             EECCSSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCC
T ss_pred             EECCCCCCC-Ccc-ccc-cCCCCCEEeCcCCcCCCCc--cccCCccccccccccccccccc-cccccccccccccccccc
Confidence            567788887 553 344 5999999999999988643  3888999999999999887543 477888999999887765


Q ss_pred             cCcCCCcc--------------------------------------------------------chhhhccccCCCCcEE
Q 048125           82 GNYGEKDN--------------------------------------------------------LEFVNSLVNASRLELL  105 (258)
Q Consensus        82 ~~~~~~~~--------------------------------------------------------~~~~~~~~~~~~L~~L  105 (258)
                      +.......                                                        .........+++++.+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l  202 (384)
T d2omza2         123 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL  202 (384)
T ss_dssp             CCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccee
Confidence            54321100                                                        0001123344555556


Q ss_pred             Eeecccccccccc--------------------cccccccccceEEecccccCCccCccCCCCCcccEEEeeCCcccccc
Q 048125          106 QISDNNFGGMLPE--------------------AVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRI  165 (258)
Q Consensus       106 ~l~~~~~~~~~~~--------------------~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  165 (258)
                      +++++.+.+..+.                    .+..+ ++++.+++.+|.+....  .+..+++|++++++++.+.+..
T Consensus       203 ~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l-~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~  279 (384)
T d2omza2         203 IATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASL-TNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNIS  279 (384)
T ss_dssp             ECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGC-TTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG
T ss_pred             eccCCccCCCCcccccCCCCEEECCCCCCCCcchhhcc-cccchhccccCccCCCC--cccccccCCEeeccCcccCCCC
Confidence            6555554422221                    11111 34444444444443211  2344555666666555443211


Q ss_pred             --------------------CCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcE
Q 048125          166 --------------------PGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIV  225 (258)
Q Consensus       166 --------------------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  225 (258)
                                          ...+..+++++.+++++|.+++..  .+..+++|++|++++|.+++ ++ .+..+++|++
T Consensus       280 ~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~  355 (384)
T d2omza2         280 PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINW  355 (384)
T ss_dssp             GGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCE
T ss_pred             ccccccccccccccccccccccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCE
Confidence                                112333445555555555554321  25556666666666666652 22 3566666666


Q ss_pred             EeccCCccccccccccccccCcceeEecCCC
Q 048125          226 LDLYNNNLSGTIPSEVIGLSSLSIYLDLSQN  256 (258)
Q Consensus       226 L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~n  256 (258)
                      |++++|++++..|  +..+++| ++|+|++|
T Consensus       356 L~l~~N~l~~l~~--l~~l~~L-~~L~L~~N  383 (384)
T d2omza2         356 LSAGHNQISDLTP--LANLTRI-TQLGLNDQ  383 (384)
T ss_dssp             EECCSSCCCBCGG--GTTCTTC-SEEECCCE
T ss_pred             EECCCCcCCCChh--hccCCCC-CEeeCCCC
Confidence            6666666663322  5556666 66666665

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.85  E-value=3.2e-20  Score=150.21  Aligned_cols=218  Identities=25%  Similarity=0.338  Sum_probs=144.6

Q ss_pred             CCCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCC------------------
Q 048125            1 DFDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKV------------------   62 (258)
Q Consensus         1 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~------------------   62 (258)
                      +|++++|.++ .+|. +. ++++|++|++.+|.+.+..  .+.++++|+.|+++++......                  
T Consensus        70 ~L~Ls~N~l~-~l~~-l~-~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  144 (384)
T d2omza2          70 QINFSNNQLT-DITP-LK-NLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI  144 (384)
T ss_dssp             EEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEE
T ss_pred             EEeCcCCcCC-CCcc-cc-CCccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccc
Confidence            3678889988 5664 44 6999999999999887543  3677888888887765543100                  


Q ss_pred             ----------------------------------------------CCccccCCcceEEeccccccCcCCCcc-------
Q 048125           63 ----------------------------------------------PSLENLHKLQRVIISQNHLGNYGEKDN-------   89 (258)
Q Consensus        63 ----------------------------------------------~~~~~l~~L~~L~l~~~~~~~~~~~~~-------   89 (258)
                                                                    .....+++++.+.+++|.++.......       
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L  224 (384)
T d2omza2         145 SDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDEL  224 (384)
T ss_dssp             CCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEE
T ss_pred             cccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCcccccCCCCEE
Confidence                                                          002223444555555544433221100       


Q ss_pred             ------chhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCc--------------------cCc
Q 048125           90 ------LEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGN--------------------IPS  143 (258)
Q Consensus        90 ------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~--------------------~~~  143 (258)
                            +.....+..+++|+.+++++|.+.+..+  +... +++++++++.+.+...                    ...
T Consensus       225 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~-~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~  301 (384)
T d2omza2         225 SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGL-TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS  301 (384)
T ss_dssp             ECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTC-TTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCG
T ss_pred             ECCCCCCCCcchhhcccccchhccccCccCCCCc--cccc-ccCCEeeccCcccCCCCcccccccccccccccccccccc
Confidence                  0112245566777777777777653222  2222 4677777766544311                    112


Q ss_pred             cCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCC
Q 048125          144 GLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNL  223 (258)
Q Consensus       144 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L  223 (258)
                      .+..+++++++++++|.+.+..  .+..+++|++|++++|.+++ ++ .++.+++|++|++++|++++..|  +.++++|
T Consensus       302 ~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L  375 (384)
T d2omza2         302 PISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRI  375 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTC
T ss_pred             ccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCC
Confidence            2455678999999999988543  37889999999999999884 43 58899999999999999985543  7889999


Q ss_pred             cEEeccCCc
Q 048125          224 IVLDLYNNN  232 (258)
Q Consensus       224 ~~L~l~~~~  232 (258)
                      +.|++++|.
T Consensus       376 ~~L~L~~Na  384 (384)
T d2omza2         376 TQLGLNDQA  384 (384)
T ss_dssp             SEEECCCEE
T ss_pred             CEeeCCCCc
Confidence            999999873

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.1e-19  Score=136.48  Aligned_cols=97  Identities=23%  Similarity=0.262  Sum_probs=44.3

Q ss_pred             cCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC--ccccCCcceEEecc-cccc
Q 048125            6 FNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS--LENLHKLQRVIISQ-NHLG   82 (258)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~l~~L~~L~l~~-~~~~   82 (258)
                      +.+++ ++|..+.   .++++|++.++.++...+..|.++++|++|++++|.+....+.  +..+++++++.+.. +.+.
T Consensus        17 ~~~l~-~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~   92 (242)
T d1xwdc1          17 ESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL   92 (242)
T ss_dssp             SCSCS-SCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCC
T ss_pred             CCCCC-CcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccc
Confidence            33444 4554332   2455555555555543333455555555555555554432211  44455555554432 2222


Q ss_pred             CcCCCccchhhhccccCCCCcEEEeeccccc
Q 048125           83 NYGEKDNLEFVNSLVNASRLELLQISDNNFG  113 (258)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  113 (258)
                      .       .....+..+++|++++++++.+.
T Consensus        93 ~-------~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          93 Y-------INPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             E-------ECTTSEECCTTCCEEEEESCCCC
T ss_pred             c-------cccccccccccccccccchhhhc
Confidence            2       11123444555555555555443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=1.4e-18  Score=130.69  Aligned_cols=202  Identities=22%  Similarity=0.343  Sum_probs=137.8

Q ss_pred             EEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEE
Q 048125           27 LNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQ  106 (258)
Q Consensus        27 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  106 (258)
                      +++....+++..  .++.+.+|+.|.+.+|.+... ..+..+++|++|++++|.+...         ..+..+++++.++
T Consensus        24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~i~~~---------~~l~~l~~l~~l~   91 (227)
T d1h6ua2          24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDL---------APLKNLTKITELE   91 (227)
T ss_dssp             HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCC---------GGGTTCCSCCEEE
T ss_pred             HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCcc-hhHhcCCCCcEeecCCceeecc---------ccccccccccccc
Confidence            444444554332  345667777777777777654 3467777788888877776542         2356677788888


Q ss_pred             eecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccc
Q 048125          107 ISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFL  186 (258)
Q Consensus       107 l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  186 (258)
                      +++|.+. .++ .+..+ +.++.+.++++....  ...+...+.++.+.+.++.+...  ..+..+++|++|++++|.+.
T Consensus        92 ~~~n~~~-~i~-~l~~l-~~L~~l~l~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~  164 (227)
T d1h6ua2          92 LSGNPLK-NVS-AIAGL-QSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVS  164 (227)
T ss_dssp             CCSCCCS-CCG-GGTTC-TTCCEEECTTSCCCC--CGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCC
T ss_pred             ccccccc-ccc-ccccc-ccccccccccccccc--cchhccccchhhhhchhhhhchh--hhhccccccccccccccccc
Confidence            8777665 333 23333 477788877765542  22345567778888887776532  34567788899998888876


Q ss_pred             cccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccccccccCcceeEecC
Q 048125          187 GEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLS  254 (258)
Q Consensus       187 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~  254 (258)
                      +.  ..++.+++|+.|++++|.+.+ ++ .++.+++|++|++++|++++ ++ .+..++.| ++|+++
T Consensus       165 ~~--~~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~-i~-~l~~l~~L-~~L~ls  225 (227)
T d1h6ua2         165 DL--TPLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISD-VS-PLANTSNL-FIVTLT  225 (227)
T ss_dssp             CC--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCB-CG-GGTTCTTC-CEEEEE
T ss_pred             cc--hhhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCC-Cc-ccccCCCC-CEEEee
Confidence            33  237788899999999998874 33 36788999999999999884 44 36788888 898886

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=6.1e-18  Score=128.27  Aligned_cols=219  Identities=18%  Similarity=0.109  Sum_probs=159.0

Q ss_pred             ceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEeccccccCcCCCccchhhhccccCCCCc
Q 048125           25 EGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLE  103 (258)
Q Consensus        25 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~  103 (258)
                      +.+++.+.+++ .+|..+.  .++++|++++|.+...... |.++++|++|++++|.+....      -...+..++.++
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i------~~~~f~~l~~l~   81 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI------EADVFSNLPKLH   81 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEE------CSSSEESCTTCC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhcccccccee------eccccccccccc
Confidence            67888887777 5665553  5799999999999876664 889999999999999876421      123577889999


Q ss_pred             EEEeecc-cccccccccccccccccceEEecccccCCccCc-cCCCCCcccEEEeeCCccccccCCcccCcc-CCcEEEe
Q 048125          104 LLQISDN-NFGGMLPEAVGNFSTRLGILSVAENQLFGNIPS-GLRNLVNLELLDLSGNQFTSRIPGSIGDLQ-KLQMLGL  180 (258)
Q Consensus       104 ~L~l~~~-~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l  180 (258)
                      ++.+..+ .+....+..+..+ ++++.+++.++.+....+. .+..++.+..+...++.+....+..|..++ .++.+++
T Consensus        82 ~l~~~~~n~l~~~~~~~~~~l-~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l  160 (242)
T d1xwdc1          82 EIRIEKANNLLYINPEAFQNL-PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL  160 (242)
T ss_dssp             EEEEECCTTCCEECTTSEECC-TTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC
T ss_pred             ccccccccccccccccccccc-ccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeec
Confidence            9998764 5553333334444 6899999999987643222 233455666666667677766667777654 7999999


Q ss_pred             cCCccccccCCCCCCCCCcceE-ecccccccccCCcccccCcCCcEEeccCCccccccccccccccCcceeEecCC
Q 048125          181 NGNKFLGEIPSSIGNLTLLMTL-NFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDLSQ  255 (258)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~L~~L-~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l~~  255 (258)
                      .++.+++..+..+. ..+++++ ++.+|.+++..+..+.++++|++|++++|+|+...+..|..++.| +++++.+
T Consensus       161 ~~n~l~~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L-~~l~~~~  234 (242)
T d1xwdc1         161 NKNGIQEIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKL-RARSTYN  234 (242)
T ss_dssp             CSSCCCEECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEE-ESSSEES
T ss_pred             cccccccccccccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCccc-ccCcCCC
Confidence            99999855444444 4555555 567788885556668889999999999999995445578888888 8888764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=2.8e-18  Score=128.97  Aligned_cols=201  Identities=21%  Similarity=0.323  Sum_probs=154.8

Q ss_pred             CCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccC
Q 048125            4 FPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGN   83 (258)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~   83 (258)
                      +..+.+++.++  . ..+.+|+.|++.+|+++..  +.+..+++|++|++++|.+.... .+..+++++.+.+++|.++.
T Consensus        26 l~~~~~~d~~~--~-~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~-~l~~l~~l~~l~~~~n~~~~   99 (227)
T d1h6ua2          26 AGKSNVTDTVT--Q-ADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLKN   99 (227)
T ss_dssp             TTCSSTTSEEC--H-HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG-GGTTCCSCCEEECCSCCCSC
T ss_pred             hCCCCcCCcCC--H-HHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc-cccccccccccccccccccc
Confidence            44555664332  2 2488999999999999853  46889999999999999987644 38889999999999998764


Q ss_pred             cCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCcccc
Q 048125           84 YGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTS  163 (258)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  163 (258)
                      .         ..+..++.|+.++++.+...+. .. +... +.++.+.+..+.+...  ..+..+++++++++++|.+..
T Consensus       100 i---------~~l~~l~~L~~l~l~~~~~~~~-~~-~~~~-~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~  165 (227)
T d1h6ua2         100 V---------SAIAGLQSIKTLDLTSTQITDV-TP-LAGL-SNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSD  165 (227)
T ss_dssp             C---------GGGTTCTTCCEEECTTSCCCCC-GG-GTTC-TTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCC
T ss_pred             c---------cccccccccccccccccccccc-ch-hccc-cchhhhhchhhhhchh--hhhcccccccccccccccccc
Confidence            3         2567889999999998876532 22 2222 4788888887766432  335677899999999998873


Q ss_pred             ccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccC
Q 048125          164 RIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYN  230 (258)
Q Consensus       164 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  230 (258)
                      .  ..+..+++|+.|++++|.+++ ++ .++.+++|++|++++|++++. + .+..+++|+.|++++
T Consensus       166 ~--~~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         166 L--TPLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             C--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEE
T ss_pred             c--hhhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEeeC
Confidence            3  347889999999999999884 33 378899999999999999853 3 378899999999863

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.72  E-value=1.2e-17  Score=122.22  Aligned_cols=110  Identities=25%  Similarity=0.316  Sum_probs=57.0

Q ss_pred             CCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEe
Q 048125          101 RLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGL  180 (258)
Q Consensus       101 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  180 (258)
                      .+++|++++|.++...+...+...++|+.|++++|.+....+..+..+++|++|++++|.+....+++|.++++|++|++
T Consensus        30 ~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L  109 (192)
T d1w8aa_          30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCccccccc
Confidence            34445555554443232222222235555555555554444445555555555555555555555555555555666666


Q ss_pred             cCCccccccCCCCCCCCCcceEeccccccc
Q 048125          181 NGNKFLGEIPSSIGNLTLLMTLNFAENMLE  210 (258)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  210 (258)
                      ++|.++...+++|..+++|+++++++|.+.
T Consensus       110 ~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_         110 YDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCccccccCHHHhcCCcccccccccccccc
Confidence            555555444555555555666666555554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=7.4e-17  Score=119.55  Aligned_cols=180  Identities=23%  Similarity=0.371  Sum_probs=127.1

Q ss_pred             EecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEEe
Q 048125           28 NLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQI  107 (258)
Q Consensus        28 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  107 (258)
                      .+....+++..+.  ..+..|++|+++++.+.... .+..+++|++|++++|++++.         ..+..+++|++|++
T Consensus        30 ~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l---------~~~~~l~~L~~L~l   97 (210)
T d1h6ta2          30 NLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDI---------KPLANLKNLGWLFL   97 (210)
T ss_dssp             HTTCSCTTSEECH--HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCC---------GGGTTCTTCCEEEC
T ss_pred             HhCcCccCCccCH--HHhcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccCc---------cccccCcccccccc
Confidence            3444444433322  34667888888888876543 367788888888888877643         13566788888888


Q ss_pred             ecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCcccc
Q 048125          108 SDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLG  187 (258)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  187 (258)
                      ++|.+. .++ .+..+ ++++.+++.++....  ...+..++.++++++++|.+.+  ...+..+++|+.+++++|++.+
T Consensus        98 ~~n~i~-~l~-~l~~l-~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~  170 (210)
T d1h6ta2          98 DENKVK-DLS-SLKDL-KKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD  170 (210)
T ss_dssp             CSSCCC-CGG-GGTTC-TTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC
T ss_pred             cccccc-ccc-ccccc-ccccccccccccccc--cccccccccccccccccccccc--cccccccccccccccccccccc
Confidence            888776 444 34444 578888888876642  2346677888888888888763  3356778889999999988874


Q ss_pred             ccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccC
Q 048125          188 EIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYN  230 (258)
Q Consensus       188 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  230 (258)
                      . + .+..+++|++|++++|.+++ ++ .+..+++|++|++++
T Consensus       171 i-~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         171 I-V-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             C-G-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             c-c-cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            3 3 37788899999999998873 44 578888999998864

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.71  E-value=6.1e-17  Score=118.32  Aligned_cols=130  Identities=22%  Similarity=0.229  Sum_probs=100.7

Q ss_pred             CcEEEeecccccccccccccccccccceEEecccccCCcc-CccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEe
Q 048125          102 LELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNI-PSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGL  180 (258)
Q Consensus       102 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  180 (258)
                      .+.++.+++.+. .+|..+.   +.+++|++++|.+.... +..|..+++|++|++++|.+....+..|..+++|++|++
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCEEEEeCCCcC-ccCCCCC---CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeee
Confidence            456777777776 6676543   46888888888886433 455677888888888888887777788888888888888


Q ss_pred             cCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCcccc
Q 048125          181 NGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSG  235 (258)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~  235 (258)
                      ++|++....+.+|..+++|++|++++|.++...+..+..+++|+++++++|.+..
T Consensus        86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             ccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            8888886667778888888888888888887777777888888888888887763

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=7e-17  Score=119.66  Aligned_cols=166  Identities=25%  Similarity=0.371  Sum_probs=116.1

Q ss_pred             ccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCC
Q 048125           67 NLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLR  146 (258)
Q Consensus        67 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~  146 (258)
                      .+.+|++|++.+|.+....         .+..+++|++|++++|.+.+ ++. +..+ ++++.|++++|.+.. ++ .+.
T Consensus        44 ~L~~L~~L~l~~~~i~~l~---------~l~~l~~L~~L~L~~n~i~~-l~~-~~~l-~~L~~L~l~~n~i~~-l~-~l~  109 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQ---------GIQYLPNVTKLFLNGNKLTD-IKP-LANL-KNLGWLFLDENKVKD-LS-SLK  109 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCT---------TGGGCTTCCEEECCSSCCCC-CGG-GTTC-TTCCEEECCSSCCCC-GG-GGT
T ss_pred             HhcCccEEECcCCCCCCch---------hHhhCCCCCEEeCCCccccC-ccc-cccC-ccccccccccccccc-cc-ccc
Confidence            4667888888888776431         35567788888888887763 332 3333 578888888887763 33 466


Q ss_pred             CCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEE
Q 048125          147 NLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVL  226 (258)
Q Consensus       147 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  226 (258)
                      .+++|+++++.++.+.. . ..+..++.++.+++.+|.+++  +..+..+++|+.+++++|.+.+ ++ .++.+++|+.|
T Consensus       110 ~l~~L~~L~l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L  183 (210)
T d1h6ta2         110 DLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNL  183 (210)
T ss_dssp             TCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEE
T ss_pred             ccccccccccccccccc-c-ccccccccccccccccccccc--cccccccccccccccccccccc-cc-cccCCCCCCEE
Confidence            67788888888877653 2 356777788888888887763  2345667888888888888774 32 36778888888


Q ss_pred             eccCCccccccccccccccCcceeEecCC
Q 048125          227 DLYNNNLSGTIPSEVIGLSSLSIYLDLSQ  255 (258)
Q Consensus       227 ~l~~~~l~~~~~~~~~~~~~l~~~L~l~~  255 (258)
                      ++++|+|+ .++ .+..+++| ++|+|++
T Consensus       184 ~Ls~N~i~-~l~-~l~~l~~L-~~L~Ls~  209 (210)
T d1h6ta2         184 YLSKNHIS-DLR-ALAGLKNL-DVLELFS  209 (210)
T ss_dssp             ECCSSCCC-BCG-GGTTCTTC-SEEEEEE
T ss_pred             ECCCCCCC-CCh-hhcCCCCC-CEEEccC
Confidence            88888887 454 57778888 8888763

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=2e-16  Score=116.15  Aligned_cols=177  Identities=27%  Similarity=0.382  Sum_probs=118.7

Q ss_pred             EEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEE
Q 048125           27 LNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQ  106 (258)
Q Consensus        27 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  106 (258)
                      ..+..+.+++..  ....+.++++|+++++.+... ..+..+++|++|++++|+++..         ..+..+++|++|+
T Consensus        23 ~~l~~~~~~~~~--~~~~l~~l~~L~l~~~~i~~l-~~l~~l~nL~~L~Ls~N~l~~~---------~~l~~l~~L~~L~   90 (199)
T d2omxa2          23 TVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDI---------TPLKNLTKLVDIL   90 (199)
T ss_dssp             HHTTCSSTTSEE--CHHHHTTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCC---------GGGTTCTTCCEEE
T ss_pred             HHhCCCCCCCcc--CHHHhcCCCEEECCCCCCCCc-cccccCCCcCcCccccccccCc---------ccccCCccccccc
Confidence            344444444332  223567777788877777643 2366777888888888777642         1366777888888


Q ss_pred             eecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccc
Q 048125          107 ISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFL  186 (258)
Q Consensus       107 l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  186 (258)
                      +++|.+. .++. +..+ +.++.++++++....  ...+..+++|+++++++|.+.. . ..+..++++++|++.+|.++
T Consensus        91 l~~n~~~-~~~~-l~~l-~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~  163 (199)
T d2omxa2          91 MNNNQIA-DITP-LANL-TNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVT  163 (199)
T ss_dssp             CCSSCCC-CCGG-GTTC-TTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCC
T ss_pred             ccccccc-cccc-cccc-ccccccccccccccc--ccccchhhhhHHhhhhhhhhcc-c-cccccccccccccccccccc
Confidence            8877665 3332 3333 478888887776542  2345667888888888887763 2 35677888888888888887


Q ss_pred             cccCCCCCCCCCcceEecccccccccCCcccccCcCCcEE
Q 048125          187 GEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVL  226 (258)
Q Consensus       187 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  226 (258)
                      +.  ..++.+++|++|++++|++++ ++ .++++++|+.|
T Consensus       164 ~l--~~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         164 DL--KPLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             CC--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             CC--ccccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            43  247788889999999988874 33 46777887765

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.68  E-value=3.4e-15  Score=118.71  Aligned_cols=226  Identities=26%  Similarity=0.283  Sum_probs=139.8

Q ss_pred             CCCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEecccc
Q 048125            1 DFDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNH   80 (258)
Q Consensus         1 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~   80 (258)
                      +|++++++++ ++|+.    .++|++|+++++.++ .+|..   ..+|+.|++.+|.+..... +  .+.|++|++++|.
T Consensus        42 ~LdLs~~~L~-~lp~~----~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~l~~-l--p~~L~~L~L~~n~  109 (353)
T d1jl5a_          42 ELELNNLGLS-SLPEL----PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKALSD-L--PPLLEYLGVSNNQ  109 (353)
T ss_dssp             EEECTTSCCS-CCCSC----CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCCCS-C--CTTCCEEECCSSC
T ss_pred             EEEeCCCCCC-CCCCC----CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccchhhh-h--ccccccccccccc
Confidence            3688899998 88863    678999999999988 45644   4689999999988765432 1  2469999999998


Q ss_pred             ccCcCCCccchhhhccccCCCCcEEEeeccccccccc------------------ccccccccccceEEecccccCCc--
Q 048125           81 LGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLP------------------EAVGNFSTRLGILSVAENQLFGN--  140 (258)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~------------------~~~~~~~~~l~~L~l~~~~~~~~--  140 (258)
                      +...+         .+..++.|+.++++++.+.....                  ..+.. .+.++.+.+..+.....  
T Consensus       110 l~~lp---------~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~-l~~l~~L~l~~n~~~~~~~  179 (353)
T d1jl5a_         110 LEKLP---------ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQN-LPFLTAIYADNNSLKKLPD  179 (353)
T ss_dssp             CSSCC---------CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTT-CTTCCEEECCSSCCSSCCC
T ss_pred             ccccc---------chhhhccceeeccccccccccccccccccchhhccccccccccccc-cccceeccccccccccccc
Confidence            87532         34567889999998876642111                  01111 13455666555432210  


Q ss_pred             ----------------cCccCCCCCcccEEEeeCCccccccCCccc-----------------CccCCcEEEecCCcccc
Q 048125          141 ----------------IPSGLRNLVNLELLDLSGNQFTSRIPGSIG-----------------DLQKLQMLGLNGNKFLG  187 (258)
Q Consensus       141 ----------------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----------------~~~~L~~L~l~~~~~~~  187 (258)
                                      ....+..++.++.+++.++.... .+....                 ....+....+..+...+
T Consensus       180 ~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  258 (353)
T d1jl5a_         180 LPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSG  258 (353)
T ss_dssp             CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSE
T ss_pred             ccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccc
Confidence                            11123446778888888765542 111111                 11122333332221111


Q ss_pred             ----------------ccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccccccccCcceeE
Q 048125          188 ----------------EIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYL  251 (258)
Q Consensus       188 ----------------~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L  251 (258)
                                      .++.....+++|++|++++|.+. .+|.   .+++|+.|++++|+|+ .+|..   +++| ++|
T Consensus       259 l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~-~l~~~---~~~L-~~L  329 (353)
T d1jl5a_         259 LSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPEL---PQNL-KQL  329 (353)
T ss_dssp             ESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCCC---CTTC-CEE
T ss_pred             cccccchhcccccccCccccccccCCCCCEEECCCCccC-cccc---ccCCCCEEECCCCcCC-ccccc---cCCC-CEE
Confidence                            01111233578999999999887 5564   3578899999999988 56643   3577 899


Q ss_pred             ecCCCCC
Q 048125          252 DLSQNQL  258 (258)
Q Consensus       252 ~l~~n~~  258 (258)
                      +|++|++
T Consensus       330 ~L~~N~L  336 (353)
T d1jl5a_         330 HVEYNPL  336 (353)
T ss_dssp             ECCSSCC
T ss_pred             ECcCCcC
Confidence            9999875

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=6.1e-16  Score=113.57  Aligned_cols=176  Identities=27%  Similarity=0.378  Sum_probs=135.8

Q ss_pred             EeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeecccccccccccccccccccceEE
Q 048125           52 MIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILS  131 (258)
Q Consensus        52 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~  131 (258)
                      .++.+.+.+.. ....+.++++|++.++.+...         +.+..+++|++|++++|.+.+ ++. +..+ ++++.|+
T Consensus        24 ~l~~~~~~~~~-~~~~l~~l~~L~l~~~~i~~l---------~~l~~l~nL~~L~Ls~N~l~~-~~~-l~~l-~~L~~L~   90 (199)
T d2omxa2          24 VLGKTNVTDTV-SQTDLDQVTTLQADRLGIKSI---------DGVEYLNNLTQINFSNNQLTD-ITP-LKNL-TKLVDIL   90 (199)
T ss_dssp             HTTCSSTTSEE-CHHHHTTCCEEECTTSCCCCC---------TTGGGCTTCCEEECCSSCCCC-CGG-GTTC-TTCCEEE
T ss_pred             HhCCCCCCCcc-CHHHhcCCCEEECCCCCCCCc---------cccccCCCcCcCccccccccC-ccc-ccCC-ccccccc
Confidence            34445444332 234678999999999988753         246678999999999998874 333 5544 5899999


Q ss_pred             ecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccccccc
Q 048125          132 VAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEG  211 (258)
Q Consensus       132 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  211 (258)
                      +++|.+.. ++ .+..++.|++++++++.....  ..+..+++|+.+++++|.+.. + +.+..+++++.|++.+|.+++
T Consensus        91 l~~n~~~~-~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~  164 (199)
T d2omxa2          91 MNNNQIAD-IT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTD  164 (199)
T ss_dssp             CCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCC
T ss_pred             cccccccc-cc-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccC
Confidence            99997763 32 477889999999999887642  357789999999999999873 3 357889999999999999984


Q ss_pred             cCCcccccCcCCcEEeccCCccccccccccccccCcceeE
Q 048125          212 SIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYL  251 (258)
Q Consensus       212 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L  251 (258)
                       ++ .++++++|+.|++++|+|+ .++ .+..+++| ++|
T Consensus       165 -l~-~l~~l~~L~~L~ls~N~i~-~i~-~l~~L~~L-~~L  199 (199)
T d2omxa2         165 -LK-PLANLTTLERLDISSNKVS-DIS-VLAKLTNL-ESL  199 (199)
T ss_dssp             -CG-GGTTCTTCCEEECCSSCCC-CCG-GGGGCTTC-SEE
T ss_pred             -Cc-cccCCCCCCEEECCCCCCC-CCc-cccCCCCC-CcC
Confidence             33 4788999999999999998 454 47778887 665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.65  E-value=1.3e-17  Score=133.04  Aligned_cols=241  Identities=17%  Similarity=0.220  Sum_probs=169.0

Q ss_pred             CCcchhccCCCCceEEecCCccccc----ccccccCCCCCcEEEeecccCCCCCC-----------CccccCCcceEEec
Q 048125           13 LPSDLGFTLPNLEGLNLAGNQFTGP----IPVSISNASNLRELMIGKNGFSGKVP-----------SLENLHKLQRVIIS   77 (258)
Q Consensus        13 ~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~-----------~~~~l~~L~~L~l~   77 (258)
                      +...+. +...|++|++++|.+...    +...+...+.|+.++++++.......           .+...++|++|+++
T Consensus        23 l~~~L~-~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  101 (344)
T d2ca6a1          23 VFAVLL-EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  101 (344)
T ss_dssp             TSHHHH-HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHh-hCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence            333444 488999999999988653    33445677999999998876532211           13456889999999


Q ss_pred             cccccCcCCCccchhhhccccCCCCcEEEeeccccccccccc----c--------cccccccceEEecccccCCc----c
Q 048125           78 QNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLPEA----V--------GNFSTRLGILSVAENQLFGN----I  141 (258)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~--------~~~~~~l~~L~l~~~~~~~~----~  141 (258)
                      +|.+...+..   .+...+...++|++|++++|.+.......    +        ....+.++.+.++++.+...    +
T Consensus       102 ~n~i~~~~~~---~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l  178 (344)
T d2ca6a1         102 DNAFGPTAQE---PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW  178 (344)
T ss_dssp             SCCCCTTTHH---HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred             cccccccccc---chhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccc
Confidence            9988764433   45566777899999999998764211111    1        11124688888888876533    2


Q ss_pred             CccCCCCCcccEEEeeCCccccc-----cCCcccCccCCcEEEecCCcccc----ccCCCCCCCCCcceEeccccccccc
Q 048125          142 PSGLRNLVNLELLDLSGNQFTSR-----IPGSIGDLQKLQMLGLNGNKFLG----EIPSSIGNLTLLMTLNFAENMLEGS  212 (258)
Q Consensus       142 ~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~  212 (258)
                      ...+...+.++++++++|.+...     ....+...++|+.|++++|.+..    .+...+..+++|++|++++|.+.+.
T Consensus       179 ~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~  258 (344)
T d2ca6a1         179 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR  258 (344)
T ss_dssp             HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred             cchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCch
Confidence            23345567899999999988632     34456778899999999998754    2345677889999999999998754


Q ss_pred             CCccc----c--cCcCCcEEeccCCcccccc----ccccc-cccCcceeEecCCCCC
Q 048125          213 IPSSL----G--KCQNLIVLDLYNNNLSGTI----PSEVI-GLSSLSIYLDLSQNQL  258 (258)
Q Consensus       213 ~~~~~----~--~~~~L~~L~l~~~~l~~~~----~~~~~-~~~~l~~~L~l~~n~~  258 (258)
                      ....+    .  ....|+.|++++|.|....    ...+. ..+.+ ++|+|++|.|
T Consensus       259 g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L-~~L~l~~N~~  314 (344)
T d2ca6a1         259 GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL-LFLELNGNRF  314 (344)
T ss_dssp             HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTC-CEEECTTSBS
T ss_pred             hhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCC-CEEECCCCcC
Confidence            33333    2  2467999999999997432    33343 46778 9999999975

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3.5e-17  Score=126.95  Aligned_cols=235  Identities=16%  Similarity=0.180  Sum_probs=151.6

Q ss_pred             CCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCC--ccccCCcceEEeccc
Q 048125            2 FDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPS--LENLHKLQRVIISQN   79 (258)
Q Consensus         2 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~l~~L~~L~l~~~   79 (258)
                      +|++++.+.+.....+..  ..+..+.+....+.... .......+|++|++++|.+......  +..+++|++|++.+|
T Consensus         5 lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~   81 (284)
T d2astb2           5 LDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL   81 (284)
T ss_dssp             EECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC
T ss_pred             EECCCCCCCchHHHHHHh--ccceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccccc
Confidence            456666555333333332  23445555544443222 2233456899999999887643222  678899999999999


Q ss_pred             cccCcCCCccchhhhccccCCCCcEEEeecc-cccccccccccccccccceEEecccc-cCCc-cCccC-CCCCcccEEE
Q 048125           80 HLGNYGEKDNLEFVNSLVNASRLELLQISDN-NFGGMLPEAVGNFSTRLGILSVAENQ-LFGN-IPSGL-RNLVNLELLD  155 (258)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~l~~L~l~~~~-~~~~-~~~~~-~~~~~L~~L~  155 (258)
                      .+.+       .....+..+++|++|++++| .+++.....+...+++|++|++++|. +.+. ....+ ...+.|++|+
T Consensus        82 ~l~~-------~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~  154 (284)
T d2astb2          82 RLSD-------PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN  154 (284)
T ss_dssp             BCCH-------HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred             CCCc-------HHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhh
Confidence            8765       55567778899999999986 44432222333344689999998874 2221 11222 2346899999


Q ss_pred             eeCCc--cccc-cCCcccCccCCcEEEecCCc-cccccCCCCCCCCCcceEecccc-cccccCCcccccCcCCcEEeccC
Q 048125          156 LSGNQ--FTSR-IPGSIGDLQKLQMLGLNGNK-FLGEIPSSIGNLTLLMTLNFAEN-MLEGSIPSSLGKCQNLIVLDLYN  230 (258)
Q Consensus       156 l~~~~--~~~~-~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~l~~  230 (258)
                      ++++.  +... .......+++|++|++++|. +++.....+..+++|++|++++| .+++.....++++++|+.|++++
T Consensus       155 l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~  234 (284)
T d2astb2         155 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG  234 (284)
T ss_dssp             CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred             hcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeC
Confidence            98763  3321 22334567899999999874 56556667788899999999996 56666667788899999999999


Q ss_pred             Ccccc-ccccccccccCc
Q 048125          231 NNLSG-TIPSEVIGLSSL  247 (258)
Q Consensus       231 ~~l~~-~~~~~~~~~~~l  247 (258)
                      | +++ .+......+|.+
T Consensus       235 ~-~~d~~l~~l~~~lp~L  251 (284)
T d2astb2         235 I-VPDGTLQLLKEALPHL  251 (284)
T ss_dssp             S-SCTTCHHHHHHHSTTS
T ss_pred             C-CCHHHHHHHHHhCccc
Confidence            8 442 222223345555

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.2e-17  Score=129.58  Aligned_cols=213  Identities=19%  Similarity=0.197  Sum_probs=144.2

Q ss_pred             cCCCCceEEecCCccccc-ccccccCCCCCcEEEeecccCCCCCCC-ccccCCcceEEeccc-cccCcCCCccchhhhcc
Q 048125           20 TLPNLEGLNLAGNQFTGP-IPVSISNASNLRELMIGKNGFSGKVPS-LENLHKLQRVIISQN-HLGNYGEKDNLEFVNSL   96 (258)
Q Consensus        20 ~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~   96 (258)
                      ...+|++|++++|.++.. +...+..+++|++|.+++|.+...... +..+++|++|++++| .+++.      .+....
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~------~l~~l~  117 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF------ALQTLL  117 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH------HHHHHH
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccccccccccc------ccchhh
Confidence            367899999999987744 344567899999999999987643333 677899999999986 44431      122234


Q ss_pred             ccCCCCcEEEeeccc-cccc-ccccccccccccceEEecccc--cCCc-cCccCCCCCcccEEEeeCC-ccccccCCccc
Q 048125           97 VNASRLELLQISDNN-FGGM-LPEAVGNFSTRLGILSVAENQ--LFGN-IPSGLRNLVNLELLDLSGN-QFTSRIPGSIG  170 (258)
Q Consensus        97 ~~~~~L~~L~l~~~~-~~~~-~~~~~~~~~~~l~~L~l~~~~--~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~  170 (258)
                      ..+++|++|++++|. +++. +...+...++.++.|+++++.  +.+. +...+..+++|++|++++| .+++.....+.
T Consensus       118 ~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~  197 (284)
T d2astb2         118 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF  197 (284)
T ss_dssp             HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG
T ss_pred             HHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhc
Confidence            568999999999873 3322 222333444689999998763  2222 2233456789999999987 46655666778


Q ss_pred             CccCCcEEEecCC-ccccccCCCCCCCCCcceEecccccccc-cCCcccccCcCCcEEeccCCccccccccccc
Q 048125          171 DLQKLQMLGLNGN-KFLGEIPSSIGNLTLLMTLNFAENMLEG-SIPSSLGKCQNLIVLDLYNNNLSGTIPSEVI  242 (258)
Q Consensus       171 ~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~  242 (258)
                      .+++|++|++++| .+++.....++.+++|++|++.++ +.+ ........+++|+   +..+++++..+..+.
T Consensus       198 ~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~---i~~~~ls~~~~~~~~  267 (284)
T d2astb2         198 QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ---INCSHFTTIARPTIG  267 (284)
T ss_dssp             GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE---ESCCCSCCTTCSSCS
T ss_pred             ccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc---ccCccCCCCCCCccC
Confidence            8999999999996 566555556788999999999998 332 2222224466665   455666644444443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=7.4e-18  Score=138.91  Aligned_cols=85  Identities=28%  Similarity=0.317  Sum_probs=49.7

Q ss_pred             cCCcEEEecCCcccccc----CCCCCCCCCcceEecccccccccC----Ccccc-cCcCCcEEeccCCccccc----ccc
Q 048125          173 QKLQMLGLNGNKFLGEI----PSSIGNLTLLMTLNFAENMLEGSI----PSSLG-KCQNLIVLDLYNNNLSGT----IPS  239 (258)
Q Consensus       173 ~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~n~~~~~~----~~~~~-~~~~L~~L~l~~~~l~~~----~~~  239 (258)
                      ..|+.+.++++.+....    ...+..+++|++|++++|.+.+..    ...+. ..+.|++|++++|+|++.    ++.
T Consensus       312 ~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~  391 (460)
T d1z7xw1         312 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA  391 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             cccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHH
Confidence            35666666665554321    122234556777777777775432    22222 345677788888777632    344


Q ss_pred             ccccccCcceeEecCCCCC
Q 048125          240 EVIGLSSLSIYLDLSQNQL  258 (258)
Q Consensus       240 ~~~~~~~l~~~L~l~~n~~  258 (258)
                      .+..+++| ++|||++|+|
T Consensus       392 ~l~~~~~L-~~L~Ls~N~i  409 (460)
T d1z7xw1         392 TLLANHSL-RELDLSNNCL  409 (460)
T ss_dssp             HHHHCCCC-CEEECCSSSC
T ss_pred             HHhcCCCC-CEEECCCCcC
Confidence            55666777 7888877764

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.56  E-value=2.6e-13  Score=107.60  Aligned_cols=228  Identities=23%  Similarity=0.226  Sum_probs=144.9

Q ss_pred             CCCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEecccc
Q 048125            1 DFDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNH   80 (258)
Q Consensus         1 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~   80 (258)
                      +|++++|+++ ++|+.    ..+|++|++.++.++. ++. +  .+.|++|++++|.+...+ .+..+++|+++++.++.
T Consensus        62 ~L~Ls~N~l~-~lp~~----~~~L~~L~l~~n~l~~-l~~-l--p~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~~~  131 (353)
T d1jl5a_          62 SLVASCNSLT-ELPEL----PQSLKSLLVDNNNLKA-LSD-L--PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNS  131 (353)
T ss_dssp             EEECCSSCCS-SCCCC----CTTCCEEECCSSCCSC-CCS-C--CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC
T ss_pred             EEECCCCCCc-ccccc----hhhhhhhhhhhcccch-hhh-h--cccccccccccccccccc-chhhhccceeecccccc
Confidence            3678899999 88864    4589999999998873 222 1  246999999999987654 46788999999999987


Q ss_pred             ccCcCCCcc-----------chhhhccccCCCCcEEEeecccccccc------------------cccccccccccceEE
Q 048125           81 LGNYGEKDN-----------LEFVNSLVNASRLELLQISDNNFGGML------------------PEAVGNFSTRLGILS  131 (258)
Q Consensus        81 ~~~~~~~~~-----------~~~~~~~~~~~~L~~L~l~~~~~~~~~------------------~~~~~~~~~~l~~L~  131 (258)
                      +........           ......+..++.++.+.++.+......                  ...... .+.++.++
T Consensus       132 ~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-l~~L~~l~  210 (353)
T d1jl5a_         132 LKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQN-LPFLTTIY  210 (353)
T ss_dssp             CSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTT-CTTCCEEE
T ss_pred             ccccccccccccchhhccccccccccccccccceecccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            765432210           011123455677888888777543110                  011111 24677888


Q ss_pred             ecccccCCccCccCC-----------------CCCcccEEEeeCCcccc----------------ccCCcccCccCCcEE
Q 048125          132 VAENQLFGNIPSGLR-----------------NLVNLELLDLSGNQFTS----------------RIPGSIGDLQKLQML  178 (258)
Q Consensus       132 l~~~~~~~~~~~~~~-----------------~~~~L~~L~l~~~~~~~----------------~~~~~~~~~~~L~~L  178 (258)
                      ++++.... .+....                 ..+.+...++..+.+.+                ........+++|++|
T Consensus       211 l~~n~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L  289 (353)
T d1jl5a_         211 ADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEEL  289 (353)
T ss_dssp             CCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEE
T ss_pred             cccccccc-cccccccccccccccccccccccccccccccccccccccccccccchhcccccccCccccccccCCCCCEE
Confidence            77765431 111111                 12233444443322211                011122335789999


Q ss_pred             EecCCccccccCCCCCCCCCcceEecccccccccCCcccccCcCCcEEeccCCccccccccccccccCcceeEec
Q 048125          179 GLNGNKFLGEIPSSIGNLTLLMTLNFAENMLEGSIPSSLGKCQNLIVLDLYNNNLSGTIPSEVIGLSSLSIYLDL  253 (258)
Q Consensus       179 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~l~~~L~l  253 (258)
                      ++++|+++ .+|.   .+++|++|++++|.++ .+|..   +++|++|++++|+|+ .+|....   ++ .+|.+
T Consensus       290 ~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~~---~L-~~L~~  351 (353)
T d1jl5a_         290 NVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIPE---SV-EDLRM  351 (353)
T ss_dssp             ECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCCCT---TC-CEEEC
T ss_pred             ECCCCccC-cccc---ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCcccc---cc-CeeEC
Confidence            99999988 5664   3578999999999998 56643   468999999999998 6776433   44 55554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=6.8e-15  Score=104.03  Aligned_cols=124  Identities=19%  Similarity=0.138  Sum_probs=100.9

Q ss_pred             cccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEec
Q 048125          125 TRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNF  204 (258)
Q Consensus       125 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  204 (258)
                      .++++|++++|++. .++..+..+++|++|++++|.+...  ..+..+++|++|++++|.+++..+..+..+++|+.|++
T Consensus        18 ~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          18 VRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             TSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             CcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccccccccccee
Confidence            47899999999987 4566667788999999999999854  35788999999999999998554555678999999999


Q ss_pred             ccccccccCC-cccccCcCCcEEeccCCccccccc----cccccccCcceeEec
Q 048125          205 AENMLEGSIP-SSLGKCQNLIVLDLYNNNLSGTIP----SEVIGLSSLSIYLDL  253 (258)
Q Consensus       205 ~~n~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~~~~l~~~L~l  253 (258)
                      ++|.+.+... ..+..+++|+.+++++|.+. ..+    ..+..+|++ ++||-
T Consensus        95 ~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L-~~LD~  146 (162)
T d1a9na_          95 TNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQV-RVLDF  146 (162)
T ss_dssp             CSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTC-SEETT
T ss_pred             ccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCc-CeeCC
Confidence            9999874322 45788999999999999998 444    357788999 88874

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=9.3e-15  Score=98.51  Aligned_cols=102  Identities=28%  Similarity=0.429  Sum_probs=82.8

Q ss_pred             ceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecccc
Q 048125          128 GILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAEN  207 (258)
Q Consensus       128 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n  207 (258)
                      +.|++++|.++ .++ .+..++.|++|++++|.+. ..|..+..+++|+.|++++|.+++ ++ .+..+++|+++++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            46888888887 343 3677889999999999998 456678889999999999999884 44 4788999999999999


Q ss_pred             cccccC-CcccccCcCCcEEeccCCccc
Q 048125          208 MLEGSI-PSSLGKCQNLIVLDLYNNNLS  234 (258)
Q Consensus       208 ~~~~~~-~~~~~~~~~L~~L~l~~~~l~  234 (258)
                      .+.+.. ...+..+++|+.+++++|.++
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            987433 245788899999999999987

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=5e-15  Score=104.69  Aligned_cols=133  Identities=19%  Similarity=0.203  Sum_probs=105.3

Q ss_pred             ccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCccC
Q 048125           95 SLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQK  174 (258)
Q Consensus        95 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  174 (258)
                      .+....++++|++++|.+. .++. ++...++++.|++++|.+.. + +.+..+++|++|++++|.+....+..+..+++
T Consensus        13 ~~~n~~~lr~L~L~~n~I~-~i~~-~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~   88 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   88 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hccCcCcCcEEECCCCCCC-ccCc-cccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccCCCccccccccc
Confidence            4566778999999999998 5554 33334689999999998873 3 45788999999999999999766666788999


Q ss_pred             CcEEEecCCccccccC-CCCCCCCCcceEecccccccccCC----cccccCcCCcEEeccCCccc
Q 048125          175 LQMLGLNGNKFLGEIP-SSIGNLTLLMTLNFAENMLEGSIP----SSLGKCQNLIVLDLYNNNLS  234 (258)
Q Consensus       175 L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~----~~~~~~~~L~~L~l~~~~l~  234 (258)
                      |++|++++|.+.+... ..+..+++|+++++++|++.+ .+    ..+..+++|+.||  +..|+
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD--~~~i~  150 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLD--FQKVK  150 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEET--TEECC
T ss_pred             cccceeccccccccccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeC--CCCCC
Confidence            9999999999874221 467889999999999999974 34    3567899999887  44444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=5.9e-14  Score=94.49  Aligned_cols=102  Identities=24%  Similarity=0.377  Sum_probs=76.7

Q ss_pred             CCCCCcCcccCCCCcchhccCCCCceEEecCCcccccccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEecccc
Q 048125            1 DFDFPFNQLQGSLPSDLGFTLPNLEGLNLAGNQFTGPIPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNH   80 (258)
Q Consensus         1 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~   80 (258)
                      +|++++|+++ .++. +. ++++|++|++++|.++ .+|..+..+++|+.|++++|.+.... .+..+++|++|++++|.
T Consensus         2 ~L~Ls~n~l~-~l~~-l~-~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLT-VLCH-LE-QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCS-SCCC-GG-GGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCC-CCcc-cc-cCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCc
Confidence            3678888888 6664 44 5888888888888887 45667788888888888888887653 47788888888888888


Q ss_pred             ccCcCCCccchhhhccccCCCCcEEEeeccccc
Q 048125           81 LGNYGEKDNLEFVNSLVNASRLELLQISDNNFG  113 (258)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  113 (258)
                      +..++.      ...+..+++|+.+++++|.++
T Consensus        77 i~~~~~------~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          77 LQQSAA------IQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCSSST------TGGGGGCTTCCEEECTTSGGG
T ss_pred             cCCCCC------chhhcCCCCCCEEECCCCcCC
Confidence            876432      235667788888888888775

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.49  E-value=1.1e-15  Score=121.61  Aligned_cols=219  Identities=17%  Similarity=0.189  Sum_probs=154.0

Q ss_pred             ccccccCCCCCcEEEeecccCCCC-----CCCccccCCcceEEeccccccCcCCC---ccchhhhccccCCCCcEEEeec
Q 048125           38 IPVSISNASNLRELMIGKNGFSGK-----VPSLENLHKLQRVIISQNHLGNYGEK---DNLEFVNSLVNASRLELLQISD  109 (258)
Q Consensus        38 ~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~~~~~~~~~~L~~L~l~~  109 (258)
                      +...+.+...+++|++++|.+...     ...+...+.|+.+++.++........   ....+...+..+++|+.|++++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            445567789999999999987532     22256778999999988765433211   1123455677889999999999


Q ss_pred             ccccccccc----cccccccccceEEecccccCCcc----Ccc---------CCCCCcccEEEeeCCccccc----cCCc
Q 048125          110 NNFGGMLPE----AVGNFSTRLGILSVAENQLFGNI----PSG---------LRNLVNLELLDLSGNQFTSR----IPGS  168 (258)
Q Consensus       110 ~~~~~~~~~----~~~~~~~~l~~L~l~~~~~~~~~----~~~---------~~~~~~L~~L~l~~~~~~~~----~~~~  168 (258)
                      |.+......    .+.. .++++.|++++|.+....    ...         ....+.++.+.++++.+...    ....
T Consensus       103 n~i~~~~~~~l~~~l~~-~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~  181 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLSK-HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  181 (344)
T ss_dssp             CCCCTTTHHHHHHHHHH-CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             cccccccccchhhhhcc-cccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccch
Confidence            988644222    2222 258999999988753211    011         12456899999999887632    2334


Q ss_pred             ccCccCCcEEEecCCcccc-----ccCCCCCCCCCcceEeccccccccc----CCcccccCcCCcEEeccCCcccccccc
Q 048125          169 IGDLQKLQMLGLNGNKFLG-----EIPSSIGNLTLLMTLNFAENMLEGS----IPSSLGKCQNLIVLDLYNNNLSGTIPS  239 (258)
Q Consensus       169 ~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~  239 (258)
                      +...+.++.+++++|.+..     .+...+..+++|+.|++++|.++..    +...+..+++|++|++++|.|.+....
T Consensus       182 l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~  261 (344)
T d2ca6a1         182 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  261 (344)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             hhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhH
Confidence            5567899999999998764     2345678899999999999998643    345567889999999999999854333


Q ss_pred             c----cc--cccCcceeEecCCCCC
Q 048125          240 E----VI--GLSSLSIYLDLSQNQL  258 (258)
Q Consensus       240 ~----~~--~~~~l~~~L~l~~n~~  258 (258)
                      .    +.  ..+.+ ++||+++|.+
T Consensus       262 ~l~~~l~~~~~~~L-~~L~ls~N~i  285 (344)
T d2ca6a1         262 AVVDAFSKLENIGL-QTLRLQYNEI  285 (344)
T ss_dssp             HHHHHHHTCSSCCC-CEEECCSSCC
T ss_pred             HHHHHhhhccCCCC-CEEECCCCcC
Confidence            3    32  34678 9999999975

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=4.9e-13  Score=93.67  Aligned_cols=106  Identities=20%  Similarity=0.115  Sum_probs=81.7

Q ss_pred             cceEEecccccCCccCccCCCCCcccEEEeeCC-ccccccCCcccCccCCcEEEecCCccccccCCCCCCCCCcceEecc
Q 048125          127 LGILSVAENQLFGNIPSGLRNLVNLELLDLSGN-QFTSRIPGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFA  205 (258)
Q Consensus       127 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  205 (258)
                      ...++..++... ..+..+...+++++|++.++ .+..+.+.+|.++++|+.|++++|+++...+.+|..+++|++|+++
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            455777666555 45666777888899998766 4776677788888999999999999887767788888999999999


Q ss_pred             cccccccCCcccccCcCCcEEeccCCccc
Q 048125          206 ENMLEGSIPSSLGKCQNLIVLDLYNNNLS  234 (258)
Q Consensus       206 ~n~~~~~~~~~~~~~~~L~~L~l~~~~l~  234 (258)
                      +|++. .++.......+|+.|++++|.+.
T Consensus        89 ~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          89 FNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCCCc-ccChhhhccccccccccCCCccc
Confidence            99988 44444444557889999988775

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.3e-15  Score=125.29  Aligned_cols=110  Identities=23%  Similarity=0.151  Sum_probs=76.8

Q ss_pred             CCcccEEEeeCCcccccc----CCcccCccCCcEEEecCCcccc----ccCCCC-CCCCCcceEeccccccccc----CC
Q 048125          148 LVNLELLDLSGNQFTSRI----PGSIGDLQKLQMLGLNGNKFLG----EIPSSI-GNLTLLMTLNFAENMLEGS----IP  214 (258)
Q Consensus       148 ~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~----~~~~~~-~~~~~L~~L~l~~n~~~~~----~~  214 (258)
                      .+.|+.++++++.+....    ...+...++|++|++++|.+.+    .+++.+ ...+.|++|++++|.+++.    +.
T Consensus       311 ~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~  390 (460)
T d1z7xw1         311 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA  390 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred             ccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHH
Confidence            346778888877765332    2233455689999999999864    233333 3467899999999999753    33


Q ss_pred             cccccCcCCcEEeccCCccccccccc----ccccc-CcceeEecCCCCC
Q 048125          215 SSLGKCQNLIVLDLYNNNLSGTIPSE----VIGLS-SLSIYLDLSQNQL  258 (258)
Q Consensus       215 ~~~~~~~~L~~L~l~~~~l~~~~~~~----~~~~~-~l~~~L~l~~n~~  258 (258)
                      ..+..+++|++|++++|+|++.....    +.... .+ ++|++++|.+
T Consensus       391 ~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L-~~l~l~~~~~  438 (460)
T d1z7xw1         391 ATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL-EQLVLYDIYW  438 (460)
T ss_dssp             HHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCC-CEEECTTCCC
T ss_pred             HHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCcc-CEEECCCCCC
Confidence            44567899999999999998544333    33333 56 9999998864

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=7e-12  Score=87.64  Aligned_cols=110  Identities=17%  Similarity=0.052  Sum_probs=83.4

Q ss_pred             cCCCCcEEEeecccccccccccccccccccceEEecccc-cCCccCccCCCCCcccEEEeeCCccccccCCcccCccCCc
Q 048125           98 NASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQ-LFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDLQKLQ  176 (258)
Q Consensus        98 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  176 (258)
                      .+...+.++.+++... ..|..+... ++++.|++.++. +....+..|..+++|++|++++|.+..+.+.+|..+++|+
T Consensus         6 ~c~~~~~l~c~~~~~~-~~p~~l~~l-~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~   83 (156)
T d2ifga3           6 CPHGSSGLRCTRDGAL-DSLHHLPGA-ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS   83 (156)
T ss_dssp             CCSSSSCEECCSSCCC-TTTTTSCSC-SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred             CcCCCCeEEecCCCCc-cCcccccCc-cccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccc
Confidence            3445567777777666 455555544 588999997664 6644556788899999999999999877788899999999


Q ss_pred             EEEecCCccccccCCCCCCCCCcceEeccccccc
Q 048125          177 MLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLE  210 (258)
Q Consensus       177 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  210 (258)
                      +|++++|+++...+..+.. .+|++|++++|++.
T Consensus        84 ~L~Ls~N~l~~l~~~~~~~-~~l~~L~L~~Np~~  116 (156)
T d2ifga3          84 RLNLSFNALESLSWKTVQG-LSLQELVLSGNPLH  116 (156)
T ss_dssp             EEECCSSCCSCCCSTTTCS-CCCCEEECCSSCCC
T ss_pred             ceeccCCCCcccChhhhcc-ccccccccCCCccc
Confidence            9999999998444445554 46999999999874

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.26  E-value=2e-13  Score=99.66  Aligned_cols=113  Identities=23%  Similarity=0.274  Sum_probs=64.0

Q ss_pred             ccccccCCCCCcEEEeecccCCCCCCCccccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeeccccccccc
Q 048125           38 IPVSISNASNLRELMIGKNGFSGKVPSLENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLP  117 (258)
Q Consensus        38 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  117 (258)
                      ++.++..+.+|++|++++|.+... ..+..+++|+.|++++|.++.++.        ....+++|++|++++|.+. .++
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~i-~~l~~l~~L~~L~Ls~N~i~~i~~--------~~~~~~~L~~L~l~~N~i~-~l~  109 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIKKIEN--------LDAVADTLEELWISYNQIA-SLS  109 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESCC-CCHHHHTTCCEEECCEEEECSCSS--------HHHHHHHCCEEECSEEECC-CHH
T ss_pred             hhhHHhcccccceeECcccCCCCc-ccccCCccccChhhcccccccccc--------ccccccccccccccccccc-ccc
Confidence            345566777777777777777654 346667777777777777654321        1222345667777766665 222


Q ss_pred             ccccccccccceEEecccccCCccC-ccCCCCCcccEEEeeCCccc
Q 048125          118 EAVGNFSTRLGILSVAENQLFGNIP-SGLRNLVNLELLDLSGNQFT  162 (258)
Q Consensus       118 ~~~~~~~~~l~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~  162 (258)
                       .+..+ ++++.|++++|.+..... ..+..+++|++|++++|++.
T Consensus       110 -~~~~l-~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         110 -GIEKL-VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             -HHHHH-HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             -ccccc-ccccccccccchhccccccccccCCCccceeecCCCccc
Confidence             22222 356666666665542211 23455556666666666554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.23  E-value=1.1e-13  Score=100.98  Aligned_cols=129  Identities=26%  Similarity=0.232  Sum_probs=78.7

Q ss_pred             hhccccCCCCcEEEeecccccccccccccccccccceEEecccccCCccCccCCCCCcccEEEeeCCccccccCCcccCc
Q 048125           93 VNSLVNASRLELLQISDNNFGGMLPEAVGNFSTRLGILSVAENQLFGNIPSGLRNLVNLELLDLSGNQFTSRIPGSIGDL  172 (258)
Q Consensus        93 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  172 (258)
                      ...+..+++|++|++++|.+. .++ .+..+ ++|+.|++++|.+. .++.....+++|++|++++|.+...  ..+..+
T Consensus        41 ~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l-~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l  114 (198)
T d1m9la_          41 DATLSTLKACKHLALSTNNIE-KIS-SLSGM-ENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKL  114 (198)
T ss_dssp             HHHHHHTTTCCEEECSEEEES-CCC-CHHHH-TTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHHH
T ss_pred             hhHHhcccccceeECcccCCC-Ccc-cccCC-ccccChhhcccccc-ccccccccccccccccccccccccc--cccccc
Confidence            345667777788888777776 333 24333 46777777777765 3343333345677777777777632  235666


Q ss_pred             cCCcEEEecCCccccccC-CCCCCCCCcceEecccccccccCCcc----------cccCcCCcEEe
Q 048125          173 QKLQMLGLNGNKFLGEIP-SSIGNLTLLMTLNFAENMLEGSIPSS----------LGKCQNLIVLD  227 (258)
Q Consensus       173 ~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~----------~~~~~~L~~L~  227 (258)
                      ++|+.|++++|.+++... ..++.+++|+.|++++|++....+..          +..+++|+.||
T Consensus       115 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            777777777777653211 34566777777777777765332221          34566677665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=4.3e-09  Score=73.64  Aligned_cols=63  Identities=24%  Similarity=0.206  Sum_probs=27.5

Q ss_pred             CCcccEEEeeCCcccccc--CCcccCccCCcEEEecCCccccccCCCCCCCCCcceEeccccccc
Q 048125          148 LVNLELLDLSGNQFTSRI--PGSIGDLQKLQMLGLNGNKFLGEIPSSIGNLTLLMTLNFAENMLE  210 (258)
Q Consensus       148 ~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  210 (258)
                      ++.|++|++++|.++...  +..+..+++|+.|++++|.+++..+-.+.....|+.+++.+|++.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            445555555555554321  223344455555555555554211111112234455555555544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.22  E-value=1e-07  Score=66.72  Aligned_cols=84  Identities=12%  Similarity=0.100  Sum_probs=38.3

Q ss_pred             cccceEEeccc-ccCCc----cCccCCCCCcccEEEeeCCcccccc----CCcccCccCCcEEEecCCcccc----ccCC
Q 048125          125 TRLGILSVAEN-QLFGN----IPSGLRNLVNLELLDLSGNQFTSRI----PGSIGDLQKLQMLGLNGNKFLG----EIPS  191 (258)
Q Consensus       125 ~~l~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~----~~~~  191 (258)
                      +.++.|+++++ .+...    +...+...+.|++|++++|.+....    ...+...+.|++|++++|.+.+    .+..
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            35666666543 23211    2223344455666666655554211    1222334555555555555543    1222


Q ss_pred             CCCCCCCcceEeccccc
Q 048125          192 SIGNLTLLMTLNFAENM  208 (258)
Q Consensus       192 ~~~~~~~L~~L~l~~n~  208 (258)
                      ++...++|++|++++|.
T Consensus        95 aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          95 STLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HTTTTCCCSEEECCCCS
T ss_pred             HHHhCCcCCEEECCCCc
Confidence            34445555555555543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=1.1e-07  Score=66.31  Aligned_cols=84  Identities=19%  Similarity=0.179  Sum_probs=57.0

Q ss_pred             cccCCCCCcEEEeecccCCCCCCC---ccccCCcceEEeccccccCcCCCccchhhhccccCCCCcEEEeeccccccccc
Q 048125           41 SISNASNLRELMIGKNGFSGKVPS---LENLHKLQRVIISQNHLGNYGEKDNLEFVNSLVNASRLELLQISDNNFGGMLP  117 (258)
Q Consensus        41 ~~~~~~~L~~L~l~~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  117 (258)
                      .+.+++.|++|++++|.+..+...   +..+++|+.|++++|.++.+...       ......+|+.+++++|++.....
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l-------~~l~~~~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSEREL-------DKIKGLKLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGH-------HHHTTCCCSSCCCTTSTTSSSSS
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhh-------hhhhccccceeecCCCCcCcCcc
Confidence            345688899999999988765432   56788999999999988865322       22234568889999998864322


Q ss_pred             c------cccccccccceEE
Q 048125          118 E------AVGNFSTRLGILS  131 (258)
Q Consensus       118 ~------~~~~~~~~l~~L~  131 (258)
                      .      .+....|+++.|+
T Consensus       133 ~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         133 DQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             SHHHHHHHHHTTSTTCCEET
T ss_pred             cchhHHHHHHHHCCCCCEEC
Confidence            1      2233446788774

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.02  E-value=6.1e-07  Score=62.67  Aligned_cols=93  Identities=11%  Similarity=0.141  Sum_probs=58.7

Q ss_pred             hhccCCCCceEEecCC-ccccc----ccccccCCCCCcEEEeecccCCCCCCC-----ccccCCcceEEeccccccCcCC
Q 048125           17 LGFTLPNLEGLNLAGN-QFTGP----IPVSISNASNLRELMIGKNGFSGKVPS-----LENLHKLQRVIISQNHLGNYGE   86 (258)
Q Consensus        17 ~~~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~-----~~~l~~L~~L~l~~~~~~~~~~   86 (258)
                      +..+.++|++|++.++ .++..    +...+...+.|++|++++|.+......     +...+.|++|++++|.+++.+.
T Consensus        10 l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~   89 (167)
T d1pgva_          10 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL   89 (167)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             HHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHH
Confidence            3345678888888764 45432    333455667788888888877532211     3445677888887777765443


Q ss_pred             CccchhhhccccCCCCcEEEeecccc
Q 048125           87 KDNLEFVNSLVNASRLELLQISDNNF  112 (258)
Q Consensus        87 ~~~~~~~~~~~~~~~L~~L~l~~~~~  112 (258)
                      .   .+...+...++|++|+++++..
T Consensus        90 ~---~l~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          90 A---RLLRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             H---HHHHHTTTTCCCSEEECCCCSS
T ss_pred             H---HHHHHHHhCCcCCEEECCCCcC
Confidence            3   4555666677777777776643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.65  E-value=2.8e-06  Score=59.10  Aligned_cols=40  Identities=10%  Similarity=0.173  Sum_probs=18.6

Q ss_pred             CCCCcccEEEeeCCccccc----cCCcccCccCCcEEEecCCcc
Q 048125          146 RNLVNLELLDLSGNQFTSR----IPGSIGDLQKLQMLGLNGNKF  185 (258)
Q Consensus       146 ~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~  185 (258)
                      ...+.|++|++++|.+...    ....+...+.++.+++.+|.+
T Consensus        43 ~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_          43 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI   86 (166)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             hcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccc
Confidence            3445555555555554321    112233344555555555544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.45  E-value=1e-05  Score=56.18  Aligned_cols=87  Identities=20%  Similarity=0.245  Sum_probs=44.3

Q ss_pred             hccCCCCceEEecCC-ccccc----ccccccCCCCCcEEEeecccCCCCCCC-----ccccCCcceEEeccccccCcCCC
Q 048125           18 GFTLPNLEGLNLAGN-QFTGP----IPVSISNASNLRELMIGKNGFSGKVPS-----LENLHKLQRVIISQNHLGNYGEK   87 (258)
Q Consensus        18 ~~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~-----~~~l~~L~~L~l~~~~~~~~~~~   87 (258)
                      ..+.+.|++|++.++ .++..    +...+...++|++|++++|.+......     +.....++.++++++.+.+.+..
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            335677777777653 34422    233344566667777766665432111     23445566666665555443222


Q ss_pred             ccchhhhccccCCCCcEEEe
Q 048125           88 DNLEFVNSLVNASRLELLQI  107 (258)
Q Consensus        88 ~~~~~~~~~~~~~~L~~L~l  107 (258)
                         .+...+...++|+.+++
T Consensus        93 ---~l~~~l~~~~~L~~l~L  109 (166)
T d1io0a_          93 ---ALVEALQSNTSLIELRI  109 (166)
T ss_dssp             ---HHHHGGGGCSSCCEEEC
T ss_pred             ---HHHHHHHhCccccEEee
Confidence               33444555555555444