Citrus Sinensis ID: 048145

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------58
Protein Sequence
MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYYKQGTQAGPVLQFQDELEWFERVKDIAPPHYAMHRDKNKRMTANDLFDLTHEDQLRKAQDWIKETSQSCSTLAILIATVVFTAAFTVPGGTNDKGFPHFLESPLFYVFTVMDVVSLALSLSSVVMFLSILTSSFDSSDFLSVLPSKLTIGFTLLFFSVLTSMITFSASILLIIRLEKKWTATLYAAAFFPVIVLALMQFPFYAAFVANLKVYYLEFIGIFPRKKKRKTHWD
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHcccccccHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHcccccccccccccccccccccHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHccccccccccHHEEcccccHHHHHHHHHHccccHHHHHcccHHHcccccccccccccccccHHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHHHccHHHHHHHHHHccccHHHHHHccccccccHHHHHHHcccccccccccccccccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHccccccHHHHHHcccccccHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHcccccccHHHHHHHcccHHHHHHHHHHHHHcccHcccccEEcccccccHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHcccHHHHccccccHHcccccccHHHHHHHHHHHcccccccHccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHcHHHHHHHHHHHccHHHHHcccccccHEHHHHHccHHHHHHHHHHcccccHHEEEEEEccccccHEHHEcccccccccccccHHHHHHHHHHHHHHHHHHccccHEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHEEEHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHcccccccccccccc
Coil and Loop (DISEMBL)
MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKqsndadknplvvenklgetplyraaSVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIddcathekptpgvteislglgkgniekkVVDVSAGEWVELMIQVKKgctnkahvdqypqavdqendttkdmtSSMRTMRILLFAVSNGIIEILEEIRHkypqtldnvnEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKyykqgtqagpvlqfQDELEWFErvkdiapphyamhrdknkrmtandlfdlTHEDQLRKAQDWIKETSQSCSTLAILIATVVFTaaftvpggtndkgfphflesplfYVFTVMDVVSLALSLSSVVMFLSILTssfdssdflsvlpskltIGFTLLFFSVLTSMITFSASILLIIRLEKKWTATLYAAAFFPVIVLALMQFPFYAAFVANLKVYYLEFIGifprkkkrkthwd
Flexible Loop (DISEMBL)
malkgdrqgfLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFskqsndadknplvvenklgetplyrAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDdcathekptpgvteislglgkgniEKKVVDVSAGEWVELMIQVKKGCtnkahvdqypqavdqendttkdmTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYYKQGTQAGPVLQFQDELEWFERVKDIAPPHYAMHRDKNKRMTANDLFDLTHEDQLRKAQDWIKETSQSCSTLAILIATVVFTAAFTVPGGTNDKGFPHFLESPLFYVFTVMDVVSLALSLSSVVMFLSILTSSFDSSDFLSVLPSKLTIGFTLLFFSVLTSMITFSASILLIIRLEKKWTATLYAAAFFPVIVLALMQFPFYAAFVANLKVYYLEFIgifprkkkrkthwd
Low Complexity Region (SEG)
MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAikkiwekkqihkkAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYYKQGTQAGPVLQFQDELEWFERVKDIAPPHYAMHRDKNKRMTANDLFDLTHEDQLRKAQDWIKETSQSCSTLAILIATVVFTAAFTVPGGTNDKGFPHFLESPLFYVFTvmdvvslalslssvvmflsiltssfdssdflsvlpsKLTIGFTLLFFSVLTSMITFSASILLIIRLEKKWTATLYAAAFFPVIVLALMQFPFYAAFVANLKVYYLEFIGIFPRKKKRKTHWD
Disordered region (IsUnstruct)
********GFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEF***********LVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQ********************TMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYYKQGTQAGPVLQFQDELEWFERVKDIAPPHYAMH********ANDLFDLTHEDQLRKAQDWIKETSQSCSTLAILIATVVFTAAFTVPGGTNDKGFPHFLESPLFYVFTVMDVVSLALSLSSVVMFLSILTSSFDSSDFLSVLPSKLTIGFTLLFFSVLTSMITFSASILLIIRLEKKWTATLYAAAFFPVIVLALMQFPFYAAFVANLKVYYLEFIGIFP**********
Disordered Region (DISOPRED)
MALKG*RQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYYKQGTQAGPVLQFQDELEWFERVKDIAPPHYAMHRDKNKRMTANDL******************TSQSCSTLAILIATVVFTAAFTV*******GFPHFLESPLFYVFTVMDVVSLALSLSSVVMFLSILTSSFDSSDFLSVLPSKLTIGFTLLFFSVLTSMITFSASILLIIRLEKKWTATLYAAAFFPVIVLALMQFPFYAAFVANLKVYYLEFIGIF***********
Disordered Region (DISEMBL)
MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYYKQGTQAGPVLQFQDELEWFERVKDIAPPHYAMHRDKNKRMTANDLFDLTHEDQLRKAQDWIKETSQSCSTLAILIATVVFTAAFTVPGGTNDKGFPHFLESPLFYVFTVMDVVSLALSLSSVVMFLSILTSSFDSSDFLSVLPSKLTIGFTLLFFSVLTSMITFSASILLIIRLEKKWTATLYAAAFFPVIVLALMQFPFYAAFVANLKVYYLEFIGIFPR*********
Disordered Region (DISPRO)
*ALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYYKQGTQAGPVLQFQDELEWFERVKDIAPPHYAMHRDKNKRMTANDLFDLTHEDQLRKAQDWIKETSQSCSTLAILIATVVFTAAFTVPGGTNDKGFPHFLESPLFYVFTVMDVVSLALSLSSVVMFLSILTSSFDSSDFLSVLPSKLTIGFTLLFFSVLTSMITFSASILLIIRLEKKWTATLYAAAFFPVIVLALMQFPFYAAFVANLKVYYLEFIGIFPR*********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYYKQGTQAGPVLQFQDELEWFERVKDIAPPHYAMHRDKNKRMTANDLFDLTHEDQLRKAQDWIKETSQSCSTLAILIATVVFTAAFTVPGGTNDKGFPHFLESPLFYVFTVMDVVSLALSLSSVVMFLSILTSSFDSSDFLSVLPSKLTIGFTLLFFSVLTSMITFSASILLIIRLEKKWTATLYAAAFFPVIVLALMQFPFYAAFVANLKVYYLEFIGIFPRKKKRKTHWD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	578	2.2.26 [Sep-21-2011]
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.467	0.457	0.211	3e-09
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.342	0.372	0.241	2e-05
Q3V096	527	Ankyrin repeat domain-con	yes	no	0.339	0.371	0.277	2e-05

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 69/327 (21%), Positives = 141/327 (43%), Gaps = 57/327 (17%)

Query: 267 LLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEII---------- 316
           L  A   G +E+++ +  K PQ    +++KGQ  LH+A+  +  E+ +++          
Sbjct: 236 LHLAARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDADPAIVMQ 295

Query: 317 ------------KEKMQLSLAEWALKIDNEGYTIL---HQVA-----------DMKYYKQ 350
                         K +  + E  L + +     L   H+ A           +  Y K+
Sbjct: 296 PDKSCNTALHVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDIAEGLPLSEESSYIKE 355

Query: 351 ------GTQAGPVLQFQDELE-WFERVKDIAPPHYAMHRDKNKRMTANDLFDLTHEDQLR 403
                   +A  + Q +DEL     ++K+       +  ++ KR   N + +++ E  LR
Sbjct: 356 CLARSGALRANELNQPRDELRSTVTQIKN----DVHIQLEQTKRTNKN-VHNISKE--LR 408

Query: 404 K-AQDWIKETSQSCSTLAILIATVVFTAAFTVPGGTNDKGFPHFLESPLFYVFTVMDVVS 462
           K  ++ I   + S + +A+L ATV F A FTVPGG N+ G    +    F +F + + ++
Sbjct: 409 KLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDNNDGSAVVVGRASFKIFFIFNALA 468

Query: 463 LALSLSSVVMFLSILTSSFDSSDFLSVLPSKLTIGFTLLFFSVLTSMITFSASILLIIRL 522
           L  SL+ VV+ ++++     +   +  + +K      L++ + + + + F AS  +++  
Sbjct: 469 LFTSLAVVVVQITLVRGETKAEKRVVEVINK------LMWLASMCTSVAFLASSYIVVGR 522

Query: 523 EKKWTATLYAAAFFPVIVLALMQFPFY 549
           + +W A L       ++   L    +Y
Sbjct: 523 KNEWAAELVTVVGGVIMAGVLGTMTYY 549

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 109/253 (43%), Gaps = 55/253 (21%)

Query: 274 GIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDN 333
           G++ I++ +  K    +   ++KGQ  LH+A+  R LE+ E I +     L E     D 
Sbjct: 173 GLLRIVKALIEKDAAIVGVKDKKGQTALHMAVKGRSLEVVEEILQADYTILNER----DR 228

Query: 334 EGYTILHQVADMKYYKQGT----------------QAGPVLQFQDELEWFERVKDI---- 373
           +G T LH +A  K   Q T                Q    +   D+L++ E   +I    
Sbjct: 229 KGNTALH-IATRKARPQITSLLLTFTAIEVNAINNQKETAMDLADKLQYSESALEINEAL 287

Query: 374 ----APPHYAMHRDKNKRMTANDLFDLTHEDQ-------------------LRK-AQDWI 409
               A     + R+   R     + D+ HE Q                   LRK  ++ +
Sbjct: 288 VEAGAKHGRFIGREDEARALKRAVSDIKHEVQSQLLQNEKTNRRVSGIAKELRKLHREAV 347

Query: 410 KETSQSCSTLAILIATVVFTAAFTVPGGTNDKGFPHFLESPL-----FYVFTVMDVVSLA 464
           + T+ S + +A+L A++ F A F +PG    +G  H  ++ +     F VF +++  SL 
Sbjct: 348 QNTTNSITVVAVLFASIAFLAIFNLPGQYFTEG-SHVGQANIAGRTGFRVFCLLNATSLF 406

Query: 465 LSLSSVVMFLSIL 477
           +SL+ VV+ ++++
Sbjct: 407 ISLAVVVVQITLV 419

Arabidopsis thaliana (taxid: 3702)

>sp|Q3V096|ANR42_MOUSE Ankyrin repeat domain-containing protein 42 OS=Mus musculus GN=Ankrd42 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 103/231 (44%), Gaps = 35/231 (15%)

Query: 35  HVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQ 94
           HVAA   D E++KK +G   +      L + DDNG+T +H  A   ++D  + L+E   +
Sbjct: 269 HVAAFKGDLEVLKKLIGDGVIN-----LNERDDNGSTPMHKAAGQGHIDCLQWLIEMGAE 323

Query: 95  SNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIW-RQ 153
           SN        + NK GETP   A     + A++   E + +     I S K +I  + R 
Sbjct: 324 SN--------ITNKAGETPSDVAKRFAHLAAVKLL-EGLQKYEIDDIESDKDHINFFTRH 374

Query: 154 VIQGCPAIK---------KIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISL 204
            ++G    K         K   + + HKK V L ++L     +   ++ K   G+TE  L
Sbjct: 375 GVEGSTDAKDDLCLSESDKANARMRAHKKIVELRQLL-----EIAESNFKHLGGITEEDL 429

Query: 205 GLGKGNIE-KKVVDVSAGEWV-ELMIQVKKGCTNKAHVDQYPQAVDQENDT 253
              K  +E KK ++   G+   E + + K  C     +D+Y   VDQ  +T
Sbjct: 430 KQKKEQLESKKTINELQGQLAYERLRREKLEC----QLDEYRVEVDQLKET 476

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	578
224118134	696	predicted protein [Populus trichocarpa]	0.541	0.449	0.541	4e-92
224136572	650	predicted protein [Populus trichocarpa]	0.520	0.463	0.519	5e-90
224136568	409	predicted protein [Populus trichocarpa]	0.520	0.735	0.519	2e-89
224116010	710	predicted protein [Populus trichocarpa]	0.577	0.470	0.472	7e-80
224105645	702	predicted protein [Populus trichocarpa]	0.565	0.465	0.464	5e-79
224115944	579	predicted protein [Populus trichocarpa]	0.852	0.851	0.343	8e-77
224115936	802	predicted protein [Populus trichocarpa]	0.761	0.548	0.391	4e-76
224115980	595	predicted protein [Populus trichocarpa]	0.532	0.517	0.490	6e-76
224115956	700	predicted protein [Populus trichocarpa]	0.712	0.588	0.381	2e-75
224115972	353	predicted protein [Populus trichocarpa]	0.539	0.883	0.477	6e-75

>gi|224118134|ref|XP_002331567.1| predicted protein [Populus trichocarpa] gi|222873791|gb|EEF10922.1| predicted protein [Populus trichocarpa]

 Score =  345 bits (884), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 171/316 (54%), Positives = 217/316 (68%), Gaps = 3/316 (0%)

Query: 244 PQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHV 303
           P ++ Q  DT+K           LL A SNGI+EI++EI   YPQ +++V+ KGQNI+HV
Sbjct: 354 PTSLAQAPDTSKANNLDGEAETSLLLATSNGIVEIVKEILDVYPQAVEHVSRKGQNIMHV 413

Query: 304 AIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYYKQGTQAGPVLQFQDE 363
           AI  RQ EIF ++K KM++ +     +ID  GYT+LH VA M YY  GT  GP LQ Q+E
Sbjct: 414 AIKNRQKEIFNMVK-KMEIPMTRLVRRIDKNGYTLLHHVAVMHYYSGGTLPGPALQLQEE 472

Query: 364 LEWFERVKDIAPPHYAMHRDKNKRMTANDLFDLTHEDQLRKAQDWIKETSQSCSTLAILI 423
           L WF+RV+ I PPHY MHR + K  TA + F  TH   L++AQ+W+K TS+SCST+A+LI
Sbjct: 473 LHWFDRVRKIIPPHYEMHRSRYKDKTAQEFFKKTHTKLLKEAQEWLKRTSESCSTVAVLI 532

Query: 424 ATVVFTAAFTVPGGTN-DKGFPHFLESPLFYVFTVMDVVSLALSLSSVVMFLSILTSSFD 482
           ATV F AA+TVPGG+N D G P  L  P+F VFTVMDV+SLA SL+SVVMFLSILTS F 
Sbjct: 533 ATVAFAAAYTVPGGSNQDTGLPVLLHDPIFLVFTVMDVLSLASSLTSVVMFLSILTSPFQ 592

Query: 483 SSDFLSVLPSKLTIGFTLLFFSVLTSMITFSASILLIIRLEKKWTATL-YAAAFFPVIVL 541
             DF   LP KL +GF+ LFFSV   M+TF+A+ILLI+ L+K+WT  L Y  AF PV + 
Sbjct: 593 LQDFRHSLPQKLILGFSFLFFSVAVMMLTFTATILLIVHLKKRWTTLLIYTVAFLPVSIF 652

Query: 542 ALMQFPFYAAFVANLK 557
           AL+Q P Y  F+  LK
Sbjct: 653 ALLQVPLYLTFMNTLK 668

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136572|ref|XP_002322363.1| predicted protein [Populus trichocarpa] gi|222869359|gb|EEF06490.1| predicted protein [Populus trichocarpa]

 Score =  338 bits (866), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 161/310 (51%), Positives = 224/310 (72%), Gaps = 9/310 (2%)

Query: 267 LLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAE 326
           L  A SNGI+EI +EI  K+PQ ++ VN++GQNILHVA+M+R+ EIF ++K+K  + +  
Sbjct: 324 LFIATSNGIVEIAKEILAKFPQGIELVNDEGQNILHVAVMHRRREIFRLVKKK-NIIVTR 382

Query: 327 WALKIDNEGYTILHQVADMKYYKQGTQAGPVLQFQDELEWFERVKDIAPPHYAMHR---- 382
            +  +DN G+T+LHQVA +K+Y  G + GP LQ Q+E++WF+RV+ + PP  +  R    
Sbjct: 383 MSTSVDNNGFTLLHQVAHVKHYSGGAKPGPALQLQEEIKWFKRVQRVVPPSLSEQRVQWV 442

Query: 383 ---DKNKRMTANDLFDLTHEDQLRKAQDWIKETSQSCSTLAILIATVVFTAAFTVPGGTN 439
              DKN   TA +LF   H+ QL+ AQDWI++TSQSCS +A+L+ATVVF AA+T+PGG++
Sbjct: 443 VPNDKNYNFTAFELFQEEHKGQLKLAQDWIEKTSQSCSAVAVLLATVVFAAAYTIPGGSD 502

Query: 440 DKGFPHFLESPLFYVFTVMDVVSLALSLSSVVMFLSILTSSFDSSDFLSVLPSKLTIGFT 499
           D+GFP FL +P F  FTV+DV +LA SL+SVVMFLSILT+ F+   F   +P KL  GFT
Sbjct: 503 DRGFPIFLHNPFFIAFTVLDVTALASSLTSVVMFLSILTTPFECEKFYHNIPRKLIWGFT 562

Query: 500 LLFFSVLTSMITFSASILLIIRLEKKWTATLYA-AAFFPVIVLALMQFPFYAAFVANLKV 558
           LLFFSV+T+M+ F+ ++LLIIRL+K+WT  L + AAF PV V A+MQFP Y AF+  +K 
Sbjct: 563 LLFFSVMTTMLAFTCTLLLIIRLKKQWTTGLMSMAAFLPVSVFAVMQFPLYVAFMTTMKD 622

Query: 559 YYLEFIGIFP 568
           +Y E +   P
Sbjct: 623 FYKEVVKSLP 632

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136568|ref|XP_002322362.1| predicted protein [Populus trichocarpa] gi|222869358|gb|EEF06489.1| predicted protein [Populus trichocarpa]

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 161/310 (51%), Positives = 224/310 (72%), Gaps = 9/310 (2%)

Query: 267 LLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAE 326
           L  A SNGI+EI +EI  K+PQ ++ VN++GQNILHVA+M+R+ EIF ++K+K  + +  
Sbjct: 83  LFIATSNGIVEIAKEILAKFPQGIELVNDEGQNILHVAVMHRRREIFRLVKKK-NIIVTR 141

Query: 327 WALKIDNEGYTILHQVADMKYYKQGTQAGPVLQFQDELEWFERVKDIAPPHYAMHR---- 382
            +  +DN G+T+LHQVA +K+Y  G + GP LQ Q+E++WF+RV+ + PP  +  R    
Sbjct: 142 MSTSVDNNGFTLLHQVAHVKHYSGGAKPGPALQLQEEIKWFKRVQRVVPPSLSEQRVQWV 201

Query: 383 ---DKNKRMTANDLFDLTHEDQLRKAQDWIKETSQSCSTLAILIATVVFTAAFTVPGGTN 439
              DKN   TA +LF   H+ QL+ AQDWI++TSQSCS +A+L+ATVVF AA+T+PGG++
Sbjct: 202 VPNDKNYNFTAFELFQEEHKGQLKLAQDWIEKTSQSCSAVAVLLATVVFAAAYTIPGGSD 261

Query: 440 DKGFPHFLESPLFYVFTVMDVVSLALSLSSVVMFLSILTSSFDSSDFLSVLPSKLTIGFT 499
           D+GFP FL +P F  FTV+DV +LA SL+SVVMFLSILT+ F+   F   +P KL  GFT
Sbjct: 262 DRGFPIFLHNPFFIAFTVLDVTALASSLTSVVMFLSILTTPFECEKFYHNIPRKLIWGFT 321

Query: 500 LLFFSVLTSMITFSASILLIIRLEKKWTATLYA-AAFFPVIVLALMQFPFYAAFVANLKV 558
           LLFFSV+T+M+ F+ ++LLIIRL+K+WT  L + AAF PV V A+MQFP Y AF+  +K 
Sbjct: 322 LLFFSVMTTMLAFTCTLLLIIRLKKQWTTGLMSMAAFLPVSVFAVMQFPLYVAFMTTMKD 381

Query: 559 YYLEFIGIFP 568
           +Y E +   P
Sbjct: 382 FYKEVVKSLP 391

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116010|ref|XP_002317184.1| predicted protein [Populus trichocarpa] gi|222860249|gb|EEE97796.1| predicted protein [Populus trichocarpa]

 Score =  304 bits (779), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 162/343 (47%), Positives = 238/343 (69%), Gaps = 9/343 (2%)

Query: 217 DVSAGEWVELMIQVKKGCTN--KAHVDQYPQAVDQENDTTKDMTSSMRTMRILLF-AVSN 273
            +++ E + L +    G     +  + Q+P A+ Q N T   +T   R  +I LF A  N
Sbjct: 341 SLTSNEQISLFLATGNGIEEIVRGIIKQHPHAIKQLNVTNSPLT---REEQIPLFLATRN 397

Query: 274 GIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDN 333
           GI EI+ EI   YP  ++ +N+KGQ+IL VA+++RQ  IF ++K++ ++ LA     ID 
Sbjct: 398 GIEEIVWEIMKLYPHAVEKLNDKGQSILDVAVIHRQKRIFNLVKQQ-RIPLARLQRVIDK 456

Query: 334 EGYTILHQVADMKYYKQGTQAGPVLQFQDELEWFERVKDIAPPHYAMHRDKNKRMTANDL 393
           +G T+LH VADM++Y+ GT+ GP L+ Q+EL+WFE+V+++ P HY   R+   + TA +L
Sbjct: 457 KGNTLLHHVADMEHYRGGTKPGPALKLQEELQWFEQVREVIPSHYVTLRNDEGK-TAEEL 515

Query: 394 FDLTHEDQLRKAQDWIKETSQSCSTLAILIATVVFTAAFTVPGGTNDKGFPHFLESPLFY 453
           F  +H+DQL  AQ WIKET+QSCST+A L+ATVVF AA+TVPGG+++ G P+F+ SP F 
Sbjct: 516 FKESHKDQLENAQKWIKETTQSCSTVAALVATVVFAAAYTVPGGSDEDGTPNFINSPYFL 575

Query: 454 VFTVMDVVSLALSLSSVVMFLSILTSSFDSSDFLSVLPSKLTIGFTLLFFSVLTSMITFS 513
           VFTV DV+SLA SL+S+V+FLS+LTS F+  +F   LP KL +GFT LFF+V+T+M++F 
Sbjct: 576 VFTVSDVLSLASSLTSLVVFLSLLTSPFELQEFHISLPRKLLVGFTFLFFAVITTMLSFG 635

Query: 514 ASILLIIRLEKKWTATLYA-AAFFPVIVLALMQFPFYAAFVAN 555
           A+IL++I+ EKK T  L + AAF PV+V A+MQF  Y +F+ +
Sbjct: 636 ATILILIQSEKKLTTLLLSIAAFLPVLVFAIMQFHLYVSFMGS 678

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105645|ref|XP_002333787.1| predicted protein [Populus trichocarpa] gi|222838519|gb|EEE76884.1| predicted protein [Populus trichocarpa]

 Score =  301 bits (771), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 156/336 (46%), Positives = 224/336 (66%), Gaps = 9/336 (2%)

Query: 222 EWVELMIQVKKGCTN--KAHVDQYPQAVDQENDTTKDMTSSMRTMRI-LLFAVSNGIIEI 278
           E + L +  + G     +  + QYP A+ Q N T   +T   R  +I LL A  NGI EI
Sbjct: 334 EQIPLFLATRNGIEEIVRGIIKQYPHAIKQLNVTNSLLT---REEQIPLLLATRNGIEEI 390

Query: 279 LEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTI 338
           + EI   YP  ++ +N+KGQ+IL VA+++RQ EIF ++K++ ++ LA     ID +G T+
Sbjct: 391 VWEIIKLYPHAVEKLNDKGQSILDVAVIHRQKEIFNLVKQQ-RIPLARLHRNIDKKGNTL 449

Query: 339 LHQVADMKYYKQGTQAGPVLQFQDELEWFERVKDIAPPHYAMHRDKNKRMTANDLFDLTH 398
           LH VAD   Y+ GT+ GP  Q QDEL+WFE+V+++ P HY   R+   + TA +LF  +H
Sbjct: 450 LHHVADTSQYRGGTKPGPAHQLQDELQWFEQVREVVPSHYVTLRNDEGK-TAEELFIESH 508

Query: 399 EDQLRKAQDWIKETSQSCSTLAILIATVVFTAAFTVPGGTNDKGFPHFLESPLFYVFTVM 458
           EDQL  A+ WIKET+QSCST+A L+AT VF AA+TVPGG+++ G P+ ++SP F  F V 
Sbjct: 509 EDQLNSARTWIKETTQSCSTVAALVATFVFAAAYTVPGGSDENGKPNLIKSPYFLSFAVA 568

Query: 459 DVVSLALSLSSVVMFLSILTSSFDSSDFLSVLPSKLTIGFTLLFFSVLTSMITFSASILL 518
           DVVSLA SL+S+ +FLS+LTS F+  DF   LP KL +GFT LF S++TSM++F ++IL+
Sbjct: 569 DVVSLAFSLTSLTVFLSLLTSRFELRDFHIALPRKLAVGFTFLFLSMMTSMLSFGSTILI 628

Query: 519 IIRLEKKWTATLYA-AAFFPVIVLALMQFPFYAAFV 553
           +I+   K T  L + A+F PV+V  +MQF  Y +F+
Sbjct: 629 LIQSGTKLTTLLLSVASFLPVLVFTIMQFRLYVSFL 664

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115944|ref|XP_002317167.1| predicted protein [Populus trichocarpa] gi|222860232|gb|EEE97779.1| predicted protein [Populus trichocarpa]

 Score =  294 bits (753), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 197/573 (34%), Positives = 302/573 (52%), Gaps = 80/573 (13%)

Query: 3   LKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEAL 62
           +KG++        Q+  +  L   T N +  +H+A   ++  L++K L  LP +  L+ L
Sbjct: 27  MKGNKNRVAE-LCQKIQDHALHVITVNDDTVLHMATYAKEASLVEKLLDELP-DHHLDKL 84

Query: 63  MQTDDNGNTAVHALATINN-VDVAKTLVEFSKQSNDADKNP--LVVENKLGETPLYRAAS 119
            + +  GNT +H  AT N+ V +A  L++         K P  L + N  GET L+RAA 
Sbjct: 85  TRQNRVGNTILHETATSNHTVALADKLLK---------KAPGLLGMRNHNGETALFRAAR 135

Query: 120 VGKIE---------------ALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKI 164
            GK +                L+++ ++ ++T  + +    ++  +WR+ +Q        
Sbjct: 136 YGKTDMFNFLAAKVSGYDESGLQFYVQRSDKTTILHMAILSLHF-VWREKVQ-------- 186

Query: 165 WEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWV 224
            ++KQ+H+ AV L K LV K      T+          S+   K  I K       GE  
Sbjct: 187 -KQKQLHRSAVELAKFLVRKDTSWELTYS---------SIDQSKPKIHK------YGE-- 228

Query: 225 ELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRH 284
                  +G   +  V    + +D+E    +           L+ A  +G +EI+EEI  
Sbjct: 229 -------RGGQERQEVHLSNKILDKEESLGETP---------LILATKSGCVEIVEEILK 272

Query: 285 KYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVAD 344
            YPQ +++++++G+N+LHVAI YRQ +IFE++K  M + +     KID +G +ILH V  
Sbjct: 273 LYPQAVEHIDDEGRNVLHVAIKYRQRKIFELVK-GMDVPMKRLTRKIDGDGNSILHTVGR 331

Query: 345 MK--YYKQGTQAGPVLQFQDELEWFERVKDIAPPHYAMHRDKNKRMTANDLFDLTHEDQL 402
            +  +       GP    Q+EL WFERVK++ P H+  H++ N ++TA   F +T   +L
Sbjct: 332 KRKDFVSDEKMEGPAFLLQEELLWFERVKEVTPSHFLNHQN-NMKLTAEGYF-ITANSEL 389

Query: 403 RK-AQDWIKETSQSCSTLAILIATVVFTAAFTVPGGTNDK-GFPHFLESPLFYVFTVMDV 460
           R  A++W+K T++ CS +A+LIATV F AA+TVPGG N   G P  +  P F VFTV DV
Sbjct: 390 RNLAKEWLKTTAEGCSVVAVLIATVAFAAAYTVPGGPNQSTGVPVLVNKPFFVVFTVTDV 449

Query: 461 VSLALSLSSVVMFLSILTSSFDSSDFLSVLPSKLTIGFTLLFFSVLTSMITFSASILLII 520
           +SL  +L+SVV FLSILTS F   DF   LP+KL +GFT LF SV   M+ F A+I+L+I
Sbjct: 450 LSLTFALTSVVTFLSILTSPFRFKDFKHTLPNKLMVGFTFLFLSVAMMMVAFGATIILMI 509

Query: 521 RLEKKWTA-TLYAAAFFPVIVLALMQFPFYAAF 552
             ++ WT  TLYA +F PV + AL  FP Y + 
Sbjct: 510 YSKESWTKITLYAVSFIPVGIFALSYFPLYPSL 542

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115936|ref|XP_002317165.1| predicted protein [Populus trichocarpa] gi|222860230|gb|EEE97777.1| predicted protein [Populus trichocarpa]

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 182/465 (39%), Positives = 273/465 (58%), Gaps = 25/465 (5%)

Query: 102 PLVVENKLGET-PLYRAA--SVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGC 158
           P  V++K+  T   +R A   VG +E+ R          ++S  + +  +  + ++ +GC
Sbjct: 316 PCEVKSKVKSTVESFRRARKEVGDLESGR--GRNSGDLGSVSKRNQRGGLLNYLKIPEGC 373

Query: 159 PAIKKIWEKKQIHKKAVALVKMLVEKRIDDC-----ATHEKPTPGVTEISLGLGKGNIEK 213
             +++IW  K+ H  A      L+EK  D+       T E               G   K
Sbjct: 374 -WLERIWNLKRKHVFAYTFAASLIEK--DESLKSVTITEEDQNKEEEGEEEQEMCGKKIK 430

Query: 214 KVVDVSAGEWVELMIQVKKGCTNKAHVDQY-PQAVDQENDTTKDMTSSMRTMRILLF-AV 271
           K    S     E+    K+  T +A   +    A   E      ++S  +   I LF A 
Sbjct: 431 KGEKTS-----EITSNAKE--TERAETSEITSNANGTERSVLSTLSSLTKKKEIPLFTAT 483

Query: 272 SNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKI 331
             GI EI++     +P  +D  +E  ++IL VA+MYRQ +IF+I+KEK ++ +A     +
Sbjct: 484 RRGIQEIVKLKIKLHPHAIDQRDEMNRSILDVAVMYRQKKIFDIVKEK-EIQMARMRRVV 542

Query: 332 DNEGYTILHQVADMKYYKQGTQAGPVLQFQDELEWFERVKDIAPPHYAMHRDKNKRMTAN 391
           D  G T+LH VADMK     T+ GP LQ Q+EL+WFERVK+  PPHY    +K+  MTA 
Sbjct: 543 DKSGNTLLHHVADMKKNSGVTKPGPALQLQEELKWFERVKEEIPPHYVPLLNKDG-MTAR 601

Query: 392 DLFDLTHEDQLRKAQDWIKETSQSCSTLAILIATVVFTAAFTVPGGTNDKGFPHFLESPL 451
           + F+ +HE QL++AQ WIKET+QSCST+A L+ATVVF AA+TVPGG+++KG P+F+ SP 
Sbjct: 602 ECFENSHEMQLKQAQKWIKETAQSCSTVAALVATVVFAAAYTVPGGSDEKGKPNFINSPY 661

Query: 452 FYVFTVMDVVSLALSLSSVVMFLSILTSSFDSSDFLSVLPSKLTIGFTLLFFSVLTSMIT 511
           F +FTV DVVSLA SL+S+V+FLS+LTS F+  +F   LP KL +GF+ LFFSVLT+M++
Sbjct: 662 FLIFTVSDVVSLASSLTSLVVFLSLLTSPFELQEFHISLPRKLVVGFSFLFFSVLTTMLS 721

Query: 512 FSASILLIIRLEKKWTATLYA-AAFFPVIVLALMQFPFYAAFVAN 555
           F A+IL++I+ E++ T  L + A+F PV++  ++QF  Y +F+ +
Sbjct: 722 FGATILILIQTERRLTTLLLSIASFLPVLIFGILQFRLYVSFMGS 766

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115980|ref|XP_002317176.1| predicted protein [Populus trichocarpa] gi|222860241|gb|EEE97788.1| predicted protein [Populus trichocarpa]

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 154/314 (49%), Positives = 219/314 (69%), Gaps = 6/314 (1%)

Query: 246 AVDQEN-DTTKDMTSSMRTMR-ILLF-AVSNGIIEILEEIRHKYPQTLDNVNEKGQNILH 302
           A D E   T+  + SS+ T + I LF A   GI EI+E I   +P  +D  +E  ++IL 
Sbjct: 260 AKDTERAQTSVSILSSLTTKKEIPLFTATRRGIEEIVELIIALHPYAIDQRDEMNRSILD 319

Query: 303 VAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYYKQGTQAGPVLQFQD 362
           VA+MYRQ +IF+I+KE+ ++ +A     +DN G T+LH VADMK   + T+ GP LQ Q+
Sbjct: 320 VAVMYRQKKIFDIVKEQ-KIPMARMRRFVDNRGNTLLHHVADMKKNSEVTKPGPALQLQE 378

Query: 363 ELEWFERVKDIAPPHYAMHRDKNKRMTANDLFDLTHEDQLRKAQDWIKETSQSCSTLAIL 422
           EL+WFERV+++ P +Y    +K+  MTA + F++ HE QL KAQ WIKETSQSCST+A L
Sbjct: 379 ELKWFERVQEVIPSYYVPLLNKDG-MTARECFEIAHEKQLEKAQIWIKETSQSCSTVAAL 437

Query: 423 IATVVFTAAFTVPGGTNDKGFPHFLESPLFYVFTVMDVVSLALSLSSVVMFLSILTSSFD 482
           +ATVVF AA+TVPGG+++ G P F+ SP F +FTV DVVSLA SL+S+V+FLS+LTS F+
Sbjct: 438 VATVVFAAAYTVPGGSDENGKPIFINSPYFLIFTVSDVVSLASSLTSLVVFLSLLTSPFE 497

Query: 483 SSDFLSVLPSKLTIGFTLLFFSVLTSMITFSASILLIIRLEKKWTATLYA-AAFFPVIVL 541
             +F   LP KL +GF+ LFFSVLT+M++F A+IL++I+ E++ T  L + A+F PV + 
Sbjct: 498 LQEFHISLPRKLIVGFSFLFFSVLTTMLSFGATILILIQTERRLTTLLLSIASFLPVFIF 557

Query: 542 ALMQFPFYAAFVAN 555
            ++QF  Y +F+  
Sbjct: 558 GILQFRLYVSFMGT 571

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115956|ref|XP_002317170.1| predicted protein [Populus trichocarpa] gi|222860235|gb|EEE97782.1| predicted protein [Populus trichocarpa]

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 172/451 (38%), Positives = 264/451 (58%), Gaps = 39/451 (8%)

Query: 117 AASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVA 176
              VG +E+            ++S  + +  I  + +V +GC  ++ IW +K+    A+ 
Sbjct: 247 GKGVGDLES--GLGRNSGDLGSVSKRNQRGGILKYLKVPKGC-WLEGIWNQKKKRVFALR 303

Query: 177 LVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTN 236
             K LVEK  DD    E             G+   + K       + V L  Q+  G  N
Sbjct: 304 FAKSLVEK--DDSYELE-------------GEEGRDGK-------QTVLLPSQIITGDQN 341

Query: 237 KAHVDQYPQAVDQENDTTKDMTSSMRTMRI-----------LLFAVSNGIIEILEEIRHK 285
           K    Q  +   +  +  KD   +  T  I           L  A   GI +I+E I + 
Sbjct: 342 KEEEGQTSKITSEAKEIEKDQCPTAHTSLIKSSLTIKVENPLFTATRRGIEKIVEMIINV 401

Query: 286 YPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADM 345
           +P  ++ +N++GQ+IL +A+MYRQ +IF+ +K++ ++ LA     +D++G T+LH VA+ 
Sbjct: 402 HPHAIEKLNKEGQSILDMAVMYRQKKIFDFLKQQ-KIPLARMRRVVDSKGNTLLHHVAEK 460

Query: 346 KYYKQGTQAGPVLQFQDELEWFERVKDIAPPHYAMHRDKNKRMTANDLFDLTHEDQLRKA 405
           +     T+ GP LQ Q+EL+WFE+V+ + P +Y    + + R TA + F++ H +QL+KA
Sbjct: 461 RKNSGVTKPGPALQLQEELQWFEQVRKVIPSNYVPLLNNDGR-TARECFEIEHTEQLKKA 519

Query: 406 QDWIKETSQSCSTLAILIATVVFTAAFTVPGGTNDKGFPHFLESPLFYVFTVMDVVSLAL 465
           Q WIKETSQSCST+A L+ATVVF AA+TVPGG+++ G P+F+ SP F +FTV DVVSLA 
Sbjct: 520 QKWIKETSQSCSTIAALVATVVFAAAYTVPGGSDENGKPNFINSPYFLIFTVSDVVSLAS 579

Query: 466 SLSSVVMFLSILTSSFDSSDFLSVLPSKLTIGFTLLFFSVLTSMITFSASILLIIRLEKK 525
           SL+S+V+FLS+LTS  +  DF   LP KL +GFT LFFSV+T+M++F A+IL++I+ E+K
Sbjct: 580 SLTSLVVFLSLLTSPIELQDFHISLPRKLIVGFTFLFFSVITTMLSFGATILILIQSERK 639

Query: 526 WTATLYA-AAFFPVIVLALMQFPFYAAFVAN 555
            T  L + A+F PV+V  +MQF  Y +F+ +
Sbjct: 640 LTTLLLSIASFLPVLVFGIMQFRLYVSFMGS 670

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115972|ref|XP_002317174.1| predicted protein [Populus trichocarpa] gi|222860239|gb|EEE97786.1| predicted protein [Populus trichocarpa]

 Score =  288 bits (736), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 151/316 (47%), Positives = 217/316 (68%), Gaps = 4/316 (1%)

Query: 242 QYPQAVDQENDTTKDMTSSMRTMRILLF-AVSNGIIEILEEIRHKYPQTLDNVNEKGQNI 300
           Q  Q   +  ++   ++S     +I LF A   GI +I E I   +P  +D  +E  ++I
Sbjct: 4   QASQNTRKAKNSVSILSSLTTKKQIPLFTATRRGIEKIAELIIRLHPHAIDQRDEMNRSI 63

Query: 301 LHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYYKQGTQAGPVLQF 360
           L VA+MYRQ +IF+I+K K ++ L      +D  G T+LH VADMK     T+ GP LQ 
Sbjct: 64  LDVAVMYRQEKIFDIVKGK-KIPLDRMRRVVDISGNTLLHHVADMKKNSGVTKPGPALQL 122

Query: 361 QDELEWFERVKDIAPPHYAMHRDKNKRMTANDLFDLTHEDQLRKAQDWIKETSQSCSTLA 420
           Q+EL+WFERV+D+ P +Y    +K+  MTA + F++ HE QL+KAQ WIKETSQSCST+A
Sbjct: 123 QEELKWFERVQDVIPSYYVPLLNKDG-MTAREYFEIAHEKQLKKAQTWIKETSQSCSTVA 181

Query: 421 ILIATVVFTAAFTVPGGTNDKGFPHFLESPLFYVFTVMDVVSLALSLSSVVMFLSILTSS 480
            L+ATVVF AA+TVPGG+++KG P F+ SP F +FTV DVVSLA SL+S+V+FLS+LTS 
Sbjct: 182 ALVATVVFAAAYTVPGGSDEKGKPIFINSPYFLIFTVSDVVSLASSLTSLVVFLSLLTSP 241

Query: 481 FDSSDFLSVLPSKLTIGFTLLFFSVLTSMITFSASILLIIRLEKKWTATLYA-AAFFPVI 539
           F+  +F   LP KL +GF+ LFFSVLT+M++F+A+IL++I+ E+K T  L + A+F PV+
Sbjct: 242 FELQEFHISLPRKLVVGFSFLFFSVLTTMLSFAATILILIQTERKLTTLLLSIASFLPVL 301

Query: 540 VLALMQFPFYAAFVAN 555
           +  ++QF  Y +F+ +
Sbjct: 302 IFGILQFRLYVSFMGS 317

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	578
TAIR|locus:2080240	574	AT3G54070 "AT3G54070" [Arabido	0.519	0.522	0.297	7.4e-31
TAIR|locus:2165174	347	AT5G35810 "AT5G35810" [Arabido	0.460	0.766	0.306	1.5e-28
TAIR|locus:2175413	669	AT5G04700 "AT5G04700" [Arabido	0.512	0.442	0.286	5.8e-28
TAIR|locus:2180228	625	AT5G04690 "AT5G04690" [Arabido	0.468	0.433	0.269	2e-25
TAIR|locus:2175448	603	AT5G04730 "AT5G04730" [Arabido	0.493	0.472	0.241	7.7e-18
TAIR|locus:2138391	572	AT4G05040 "AT4G05040" [Arabido	0.288	0.291	0.298	9.1e-09
TAIR|locus:2128791	683	AT4G03470 [Arabidopsis thalian	0.307	0.260	0.271	3.4e-07
TAIR|locus:2129685	694	AT4G14390 "AT4G14390" [Arabido	0.385	0.321	0.256	5.8e-07
TAIR|locus:2026489	543	AT1G07710 "AT1G07710" [Arabido	0.280	0.298	0.265	1.9e-06
TAIR|locus:2045233	662	AT2G31820 [Arabidopsis thalian	0.171	0.149	0.315	4.2e-06

TAIR|locus:2080240 AT3G54070 "AT3G54070" [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 7.4e-31, Sum P(2) = 7.4e-31
 Identities = 94/316 (29%), Positives = 144/316 (45%)

Query:   267 LLF-AVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLS-- 323
             LLF A   G +EIL  +   +   L  V+   + + HVA +YR   IF +I E   +   
Sbjct:   258 LLFDAAELGNVEILVILIRSHLDLLWIVDNNNRTLFHVAALYRHENIFSLIYELGGIKDL 317

Query:   324 LAEWALKIDNEGYTILHQVADMK-YYKQGTQAGPVLQFQDELEWFERVKDIAPPHYAMHR 382
             +A +  K   +  T+LH VA +    +Q   +G  L  Q EL WF+ VK+I P  Y +  
Sbjct:   318 IASYKEKQSKD--TLLHLVARLPPMNRQQVGSGAALHMQKELLWFKAVKEIVPRSY-IET 374

Query:   383 DKNKRMTANDLFDLTHEDQLRKAQDWIKETSQSCSTLAILIATVVFTAAFTVPGGTNDKG 442
                K   A+D+F   HE+  ++ + W+KET+ +C   A LIATVVF AA T+PGG +D G
Sbjct:   375 KNTKGELAHDIFTEQHENLRKEGERWMKETATACMLGATLIATVVFAAAITIPGGNDDSG 434

Query:   443 -------FPHFLESPLFYVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLT 495
                    FP+F +  LF +FT                                    KL 
Sbjct:   435 DKANTLGFPNFRKRLLFDIFTLSDSVALFSSMMSIVIFLSIFTSRYAEEDFRYDLPTKLM 494

Query:   496 IGFTLLFFSVLTSMITFSASILLIIRLEKKWTATLYAAAFFPVIVLALMQFPFYAAFVAN 555
              G + LF S+++ ++ F+ S++LI R+EK   + +  +    +  L      F+  F   
Sbjct:   495 FGLSALFISIISMILAFTFSMILI-RVEKASLSLVLISCLASLTALTFAYLYFHLWFNTL 553

Query:   556 LKVYYLEFIGIFPRKK 571
               VY   F+    RK+
Sbjct:   554 RSVYISMFL-FLGRKR 568

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2165174 AT5G35810 "AT5G35810" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 86/281 (30%), Positives = 138/281 (49%)

Query:   266 ILLF-AVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLS- 323
             +LLF A  +G +E+L  +   YP  +  V+ K Q++ H+A + R  +IF  I E   +  
Sbjct:    33 MLLFDAAQSGNLELLLILIRSYPDLIWTVDHKNQSLFHIAAINRHEKIFNRIYELGAIKD 92

Query:   324 -LAEWALKIDNEGYTILHQVADMKYYKQ-GTQAGPVLQFQDELEWFERVKDIAPPHYAMH 381
              +A +  K  N+   +LH VA +    +    +G  LQ Q E+ W++ VK+I P  Y   
Sbjct:    93 LIAMYKEKESNDN--LLHLVARLPPPNRLQVVSGAALQMQREILWYKAVKEIVPRVYIKT 150

Query:   382 RDKNKRMTANDLFDLTHEDQLRKAQDWIKETSQSCSTLAILIATVVFTAAFTVPGGTNDK 441
             ++K K   A+DLF   H++  ++ + W+KET+ +C  ++ LIATVVF AAFT+PGG +  
Sbjct:   151 KNK-KEEVAHDLFTKEHDNLRKEGEKWMKETATACILVSTLIATVVFAAAFTLPGGNDTS 209

Query:   442 G------FPHFLESPLFYVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLT 495
             G      FP F +   F VF                                     KL 
Sbjct:   210 GDIKTLGFPTFRKEFWFEVFIISDSVALLSSVTSIMIFLSILTSRYAEASFQTTLPTKLM 269

Query:   496 IGFTLLFFSVLTSMITFSASILLIIRLEKKWTATL--YAAA 534
             +G   LF S+++ ++ F+A+++LI   E KW+  L  Y A+
Sbjct:   270 LGLLALFVSIISMVLAFTATLILIRDQEPKWSLILLVYVAS 310

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175413 AT5G04700 "AT5G04700" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 5.8e-28, Sum P(2) = 5.8e-28
 Identities = 90/314 (28%), Positives = 142/314 (45%)

Query:   267 LLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHV-AIMYRQLEIFEII---KEKMQL 322
             LLFAV  G ++ L E+     + L +      + L + A+ +RQ ++F ++    ++  L
Sbjct:   363 LLFAVRYGNVDFLVEMIRNNSELLWSTRTSSSSTLFLLAVEFRQEKVFSLLYGLDDRKYL 422

Query:   323 SLAEWALKIDNEGYTILHQVA-DMKYYKQGTQAGPVLQFQDELEWFERVKDIAPPHYAMH 381
              LA+   K D +G  +LH         K  +  G  LQ Q EL+WF+ V+ IAP      
Sbjct:   423 LLAD---K-DCDGNGVLHLAGFPSPPSKLSSVVGAPLQLQRELQWFKEVERIAP-EIEKE 477

Query:   382 RDKNKRMTANDLFDLTHEDQLRKAQDWIKETSQSCSTLAILIATVVFTAAFTVPGGTND- 440
             R   +  T  ++F   H+   ++A+ W+K+T+ SCS +A LI TV F A FTVPGGT+D 
Sbjct:   478 RVNTEEQTPIEIFTKEHQGLRQEAEKWMKDTAMSCSLVAALIVTVTFAAVFTVPGGTDDN 537

Query:   441 -KGFPHFLESPLFYVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLTIGFT 499
              KG P  L    F +F                                     K+  G +
Sbjct:   538 SKGKPFHLRDRRFIIFIVSDLISCFASCTSVLIFLGILTARYSFDDFLVFLPTKMIAGLS 597

Query:   500 LLFFSVLTSMITFSASILLIIRLEKKW-TATLYAAAFFPVIVLALMQFPFYAAFVANLKV 558
             +LF S+   +I FS+++  ++  E KW  A     A  P ++  L+Q+P     + +   
Sbjct:   598 ILFVSIAAMLIAFSSALFTMMGKEGKWIVAPTILFACLPALLFVLLQYPLLKEMIFST-- 655

Query:   559 YYLEFIGIFPRKKK 572
              Y +  GIF R  K
Sbjct:   656 -YGK--GIFDRNMK 666

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2180228 AT5G04690 "AT5G04690" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.0e-25, Sum P(2) = 2.0e-25
 Identities = 78/289 (26%), Positives = 129/289 (44%)

Query:   267 LLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIK---EKMQLS 323
             LLFAV  G ++ L E+     + L +       + + A+  RQ ++F ++    ++  L 
Sbjct:   324 LLFAVRYGNVDFLVEMIKNNSELLWSTGTS--TLFNTAVQVRQEKVFSLLYGLGDRKYLF 381

Query:   324 LAEWALKIDNEGYTILHQVA-DMKYYKQGTQAGPVLQFQDELEWFERVKDIAPPHYAMHR 382
             LA+   K D++G ++LH        YK  T     LQ Q EL+WF+ ++ I P      R
Sbjct:   382 LAD---K-DSDGNSVLHLAGYPPPNYKLATVVSATLQMQRELQWFKEMERIVPA-IENER 436

Query:   383 DKNKRMTANDLFDLTHEDQLRKAQDWIKETSQSCSTLAILIATVVFTAAFTVPGGTNDK- 441
                + +T  ++F   HE    +A+ W+K+T+ SCS +A LI TV F A FTVPGGT+D  
Sbjct:   437 VNTENLTPIEIFRKEHEAMRLEAEKWMKDTAMSCSLVAALIVTVTFAAIFTVPGGTDDNS 496

Query:   442 -GFPHFLESPLFYVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLTIGFTL 500
              G P      +F +F                                      +  G + 
Sbjct:   497 GGRPFHRHERIFVIFIVSDLISCFAACTSVLIFLGILTARYAFDDFLFSLPANMIAGLST 556

Query:   501 LFFSVLTSMITFSASILLIIRLEKKWTA--TLYAAAFFPVIVLALMQFP 547
             LF S+   ++ FS+++  I      W    T++ A F P ++  ++Q+P
Sbjct:   557 LFVSIAAMLVAFSSALFTIFN--DPWIVAPTIFFACF-PALLFVMIQYP 602

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175448 AT5G04730 "AT5G04730" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 7.7e-18, P = 7.7e-18
 Identities = 71/294 (24%), Positives = 131/294 (44%)

Query:   267 LLFAVSNGIIEILEEIRHKYPQTLDNVNE-KGQNILHVAIMYRQLEIFEIIK--EKMQLS 323
             LL A  +G  +   EI     Q L  +N   G+N+  +A+ +++ +IF +I   +  +++
Sbjct:   298 LLEAAKSGNRDFFIEIIKCNSQLLWILNPTSGRNLFQLAVEFKKEKIFNLIHGLDDRKVT 357

Query:   324 LAEWALKIDNEGYTILHQVADMKYYKQGTQ-AGPVLQFQDELEWFERVKDIAPPHYAMHR 382
             L       D     ILH    +    Q ++ +G  L+ Q E +WF+ V+ +      + +
Sbjct:   358 LLR---SYDKGNNNILHIAGRLSTPDQLSKISGAALKMQRESQWFKEVESLVSEREVVQK 414

Query:   383 DKNKRMTANDLFDLTHEDQLRKAQDWIKETSQSCSTLAILIATVVFTAAFTVPGGTND-K 441
             +K+ + T   +F+  HE   ++ ++W+K T+ +CS +A LIATV F A FTVPGG +   
Sbjct:   415 NKDNK-TPRQIFEHYHEHLRKEGEEWMKYTATACSFVAALIATVTFQAIFTVPGGIDGTS 473

Query:   442 GFPHFLESPLFYVFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLTIGFTLL 501
             G P  L    F  F                                     K+ +G ++L
Sbjct:   474 GSPLILNDLHFRAFIFTDTLAFFASCISVLIFLSILTSRYSFDDFIVSLPRKMILGQSIL 533

Query:   502 FFSVLTSMITFSASILLIIRLEKKWTATLYAAAFFPVIVLALMQFPFYAAFVAN 555
             F S+ + ++ F  S+   +R +      L   A FP ++  ++Q+P     +++
Sbjct:   534 FISIASMLVAFITSLSASMRHKPALVYPLKPLASFPSLLFLMLQYPLLKEMISS 587

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2138391 AT4G05040 "AT4G05040" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 9.1e-09, Sum P(2) = 9.1e-09
 Identities = 58/194 (29%), Positives = 89/194 (45%)

Query:   270 AVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLS-LAEWA 328
             A  NG I I++EI  + P +   +N+ GQN+LH+A    +     ++K  M+        
Sbjct:   348 AAENGHIRIVKEILKRCPHSKHMLNKLGQNVLHIAAKIGE---HNLVKSLMRSDDTKHLG 404

Query:   329 LKIDNEGYTILH-QVADMKYYKQGTQAGPV--LQFQDELEWFER--VKDIAPPHYAMHRD 383
             +  D +G T LH  V + +Y    T A  V  LQ +++     R   + +  P+Y  H  
Sbjct:   405 VGQDVDGNTPLHLAVLNWRYRSIRTLASDVKILQLRNDNGLTARGIAESVLKPNYIFH-- 462

Query:   384 KNKRMTANDLFDLTHE-------DQLRKAQDWIK-ETSQS-CSTL---AILIATVVFTAA 431
               +R+T   L D  H          L K  + +  E S+   +TL   A L+AT+ F A 
Sbjct:   463 --ERLTLAFLLD-AHAFRGCGSVKSLTKPSEPLDHEKSRDYVNTLLLVAALVATMTFAAG 519

Query:   432 FTVPGGTNDKGFPH 445
             FT+PGG N    PH
Sbjct:   520 FTIPGGFNSSA-PH 532

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128791 AT4G03470 [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
 Identities = 57/210 (27%), Positives = 96/210 (45%)

Query:   270 AVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWAL 329
             AV  G I++++EI  + P +   +N+KGQN+LH+A    +  I   +    Q++    A 
Sbjct:   345 AVEKGRIKVVKEICKRCPYSKLLLNKKGQNLLHIAAESGKFRILRHLTAHEQIN--HLAN 402

Query:   330 KIDNEGYTILHQVADMKYYKQ------GTQAGPVLQFQDELEWFERVKDIAPPHYAMHRD 383
             + D +G T LH +A + Y++       G +   ++Q  + L   +  +    PHY     
Sbjct:   403 EKDVDGNTPLH-LATI-YWRPRAVRELGGKKNLLIQNNNGLVALDIAESKLQPHYIFR-- 458

Query:   384 KNKRMTANDLFDLTHEDQLRKAQDWI-----------KETSQSCSTLAILIATVVFTAAF 432
               +R+T   L  L  ++  R A   I           K+   +   +A LI TV FT+ F
Sbjct:   459 --ERLTLLALVQLHFQNDPRCAHTMIQTRPIMPQGGNKDYINALLVVAALITTVTFTSGF 516

Query:   433 TVPGGTNDK----GFPHFLESP---LFYVF 455
             T+PGG  D     G  + + +P   LF +F
Sbjct:   517 TIPGGFKDSTPNVGMANLITNPRLILFLIF 546

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2129685 AT4G14390 "AT4G14390" [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
 Identities = 65/253 (25%), Positives = 105/253 (41%)

Query:   215 VVDVSAGEWVELMIQVK-KG--CTN-KAHVDQYPQAVDQENDTTKDMTSSMRTMRILLF- 269
             V+DV   E+  LM +    G  C +  AH+  Y    +    +TK +    +     +  
Sbjct:   306 VLDVILDEYPSLMDERDINGWTCLSLAAHIGYYEGVCNLLERSTKGVYVCDQDGSFPIHT 365

Query:   270 AVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEII---KEKMQLSLAE 326
             A   G   I+EE   + P +   +N+ GQN+LH+A    +  I  ++   K+   L + +
Sbjct:   366 AAEKGHENIVEEFIKRCPGSKHLLNKLGQNVLHIAAKNGKFWISNMLIINKDTEHLGVGQ 425

Query:   327 WALKIDNEGYTILHQVADMKYYKQGT---QAGPVLQFQDELEWFERVKDIAPPHYAMHRD 383
                  D +G T LH      ++K  T   ++  +L+ +++     R +DIA      H  
Sbjct:   426 -----DVDGNTPLHLAVMNWHFKSITWLARSSKILKVRNKNGL--RARDIAEREVKPHYI 478

Query:   384 KNKRMTANDLFDLTHE------DQLRKAQDWI--KETSQSCSTL---AILIATVVFTAAF 432
               +R T   L    H         L K    +  K      +TL   A L+AT+ F A F
Sbjct:   479 FQERWTLALLLYAIHSRGFESVHSLTKPSVPLDPKNNRDYVNTLLLVAALVATMTFAAGF 538

Query:   433 TVPGGTNDKGFPH 445
             T+PGG N    PH
Sbjct:   539 TIPGGFNSSA-PH 550

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026489 AT1G07710 "AT1G07710" [Arabidopsis thaliana (taxid:3702)]

 Score = 99 (39.9 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
 Identities = 48/181 (26%), Positives = 80/181 (44%)

Query:   267 LLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEII-KEKMQLSLA 325
             L  AV    +E++EE+      +++  + KG   LH+A    + +I +++    M  + A
Sbjct:   207 LHMAVKGTNVEVVEELIKADRSSINIADTKGNTALHIAARKGRSQIVKLLLANNMTDTKA 266

Query:   326 -----EWAL----KIDNEGYTILHQVADMKYYKQGTQAGPVLQFQDELEWFERVKDIAPP 376
                  E AL    KI N    ++ Q   +   K    +GP        E  + V DI   
Sbjct:   267 VNRSGETALDTAEKIGNPEVALILQKHGVPSAKTIKPSGP----NPARELKQTVSDIK-- 320

Query:   377 HYAMHRDKNKRMTANDLFDLTHEDQLRKAQ-DWIKETSQSCSTLAILIATVVFTAAFTVP 435
             H   ++ ++ R+T   +  +    QL K   + +     S + +A+LIATV F A FTVP
Sbjct:   321 HEVHNQLEHTRLTRKRVQGIAK--QLNKMHTEGLNNAINSTTVVAVLIATVAFAAIFTVP 378

Query:   436 G 436
             G
Sbjct:   379 G 379

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2045233 AT2G31820 [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 4.2e-06, Sum P(3) = 4.2e-06
 Identities = 35/111 (31%), Positives = 52/111 (46%)

Query:    17 QTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHAL 76
             +TD  L      NG+ A+H AA M   E++K  +G+ P         +TD  G TA+H  
Sbjct:   279 ETDSNLAKIAKNNGKTALHSAARMGHVEVVKSLIGKDP-----SIGFRTDKKGQTALHMA 333

Query:    77 ATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALR 127
                 N  +   LV+        D   L VE+  G TPL+ A + G+I+ +R
Sbjct:   334 VKGQNDGIVVELVK-------PDVAVLSVEDNKGNTPLHIATNKGRIKIVR 377

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.01660047 hypothetical protein (696 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	578
pfam13962	114	pfam13962, PGG, Domain of unknown function	1e-22
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-11
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	9e-10
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-07
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	7e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	8e-05
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-04
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.002
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	0.002

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score = 93.0 bits (232), Expect = 1e-22
 Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 14/121 (11%)

Query: 406 QDWIKETSQSCSTLAILIATVVFTAAFTVPGG------TNDKGFPHFLESP-LFYVFTVM 458
            +W+++T  S   +A LIATV F A FT PGG       +  G P     P  F  F V 
Sbjct: 1   SEWLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVS 60

Query: 459 DVVSLALSLSSVVMFLSILTSSFDSSDFLSVLPSKLTIGFTLLFFSVLTSMITFSASILL 518
           + ++   SL +V++ L I+        F   LP +L    TLL+ S+L+ M+ F+A    
Sbjct: 61  NTIAFVASLVAVILLLYIV------PSFSRRLP-RLLALLTLLWLSLLSLMVAFAAGSYR 113

Query: 519 I 519
           +
Sbjct: 114 V 114

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 60.1 bits (146), Expect = 5e-11
 Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 14/104 (13%)

Query: 25  YRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDV 84
            R  +G   +H+AA+    E++K  L           +   D++G T +H  A   ++++
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGAD------VNAKDNDGRTPLHLAAKNGHLEI 55

Query: 85  AKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRY 128
            K L+E       AD N     +K G TPL+ AA  G ++ ++ 
Sbjct: 56  VKLLLE-----KGADVN---ARDKDGNTPLHLAARNGNLDVVKL 91

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 56.2 bits (136), Expect = 9e-10
 Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 14/104 (13%)

Query: 25  YRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDV 84
            +  +G   +H+AA     E++K  L      ++   +   D +GNT +H  A   N+DV
Sbjct: 35  AKDNDGRTPLHLAAKNGHLEIVKLLL------EKGADVNARDKDGNTPLHLAARNGNLDV 88

Query: 85  AKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRY 128
            K L++     + AD N     +K G TPL+ AA  G +E ++ 
Sbjct: 89  VKLLLK-----HGADVN---ARDKDGRTPLHLAAKNGHLEVVKL 124

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 47.2 bits (113), Expect = 6e-07
 Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 16/99 (16%)

Query: 34  IHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSK 93
           +H+AA   + EL+K  L          A +   D  +TA+H  A   N+++ K L+E   
Sbjct: 1   LHLAAKNGNLELVKLLL-------EKGADVNLGDT-DTALHLAARNGNLEIVKLLLEHGA 52

Query: 94  QSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ 132
             N  DK+        G T L+ AA  G +E ++   E 
Sbjct: 53  DVNAKDKD--------GNTALHLAARNGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 42.4 bits (100), Expect = 7e-05
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 8/75 (10%)

Query: 267 LLFAVSNGIIEILEE-IRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLA 325
           L  A SNG +E+++  + +     ++  +  G+  LH+A     LEI +++     L   
Sbjct: 11  LHLAASNGHLEVVKLLLENGAD--VNAKDNDGRTPLHLAAKNGHLEIVKLL-----LEKG 63

Query: 326 EWALKIDNEGYTILH 340
                 D +G T LH
Sbjct: 64  ADVNARDKDGNTPLH 78

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 40.3 bits (95), Expect = 8e-05
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 8/61 (13%)

Query: 69  GNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRY 128
           G TA+H  A    +++ K L+E     N  D++        G T L+ AA  G +E L+ 
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDED--------GNTALHIAAENGNLEVLKL 52

Query: 129 F 129
            
Sbjct: 53  L 53

Length = 54

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 262 RTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEK 319
            T   L  A  NG +EI++ +  ++   ++  ++ G   LH+A     LEI +++ E 
Sbjct: 27  DTDTALHLAARNGNLEIVKLL-LEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 8/82 (9%)

Query: 267 LLFAVSNGIIEILEE-IRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLA 325
           L  A  NG +EI++  +       ++  ++ G   LH+A     L++ +++ +      A
Sbjct: 44  LHLAAKNGHLEIVKLLLEKGAD--VNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNA 101

Query: 326 EWALKIDNEGYTILHQVADMKY 347
                 D +G T LH  A   +
Sbjct: 102 -----RDKDGRTPLHLAAKNGH 118

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 6/57 (10%)

Query: 33 AIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLV 89
          A+H AA     EL+K  L     EK ++     D++GNTA+H  A   N++V K L+
Sbjct: 4  ALHKAAISGRLELVKYLL-----EKGVDINRT-DEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 39.8 bits (92), Expect = 0.002
 Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 16/112 (14%)

Query: 25  YRTFNGECAIHVAAAMEDP-----ELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATI 79
            +  +G+  +H+AA   +P     E+ K  L        L+     D++GNT +H  A  
Sbjct: 101 AKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGA---DLDVNNLRDEDGNTPLHWAALN 157

Query: 80  NNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAE 131
            + D+ + L+E     N          N  G T L  AA  G+IE ++   +
Sbjct: 158 GDADIVELLLEAGADPN--------SRNSYGVTALDPAAKNGRIELVKLLLD 201

Length = 235

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	578
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.98
PHA03100	480	ankyrin repeat protein; Provisional	99.98
PHA02878	477	ankyrin repeat protein; Provisional	99.98
PHA02730	672	ankyrin-like protein; Provisional	99.97
PHA02798	489	ankyrin-like protein; Provisional	99.97
PHA02917	661	ankyrin-like protein; Provisional	99.97
PHA02917	661	ankyrin-like protein; Provisional	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
PHA02989	494	ankyrin repeat protein; Provisional	99.96
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.96
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
PHA02798	489	ankyrin-like protein; Provisional	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.96
KOG0508	615	consensus Ankyrin repeat protein [General function	99.95
PHA02730	672	ankyrin-like protein; Provisional	99.95
KOG0508	615	consensus Ankyrin repeat protein [General function	99.95
PHA02792	631	ankyrin-like protein; Provisional	99.95
PHA02792	631	ankyrin-like protein; Provisional	99.93
PHA02795	437	ankyrin-like protein; Provisional	99.93
PF13962	113	PGG: Domain of unknown function	99.93
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.92
PHA02859	209	ankyrin repeat protein; Provisional	99.92
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.91
PHA02795	437	ankyrin-like protein; Provisional	99.91
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.91
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.91
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.9
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.9
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.89
KOG0514	452	consensus Ankyrin repeat protein [General function	99.88
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.86
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.84
PHA02741	169	hypothetical protein; Provisional	99.84
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.83
PHA02741	169	hypothetical protein; Provisional	99.83
PHA02743	166	Viral ankyrin protein; Provisional	99.83
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.83
KOG0514	452	consensus Ankyrin repeat protein [General function	99.82
PHA02743	166	Viral ankyrin protein; Provisional	99.81
PHA02736	154	Viral ankyrin protein; Provisional	99.79
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.79
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.79
PHA02736	154	Viral ankyrin protein; Provisional	99.78
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.77
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.75
PHA02884	300	ankyrin repeat protein; Provisional	99.75
PHA02884	300	ankyrin repeat protein; Provisional	99.73
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.7
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.69
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.64
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.64
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.58
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.55
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.55
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.54
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.48
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.43
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.43
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.4
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.4
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.39
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.39
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.38
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.32
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.31
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.25
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.15
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.07
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.92
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.89
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.77
PF13606	30	Ank_3: Ankyrin repeat	98.67
KOG0522	560	consensus Ankyrin repeat protein [General function	98.63
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.63
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.61
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.56
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.51
PF13606	30	Ank_3: Ankyrin repeat	98.43
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.43
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.42
KOG0522	560	consensus Ankyrin repeat protein [General function	98.36
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.35
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.34
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.23
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.22
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.2
KOG2384	223	consensus Major histocompatibility complex protein	98.14
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.05
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.01
KOG0511	516	consensus Ankyrin repeat protein [General function	97.81
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.71
KOG0511	516	consensus Ankyrin repeat protein [General function	97.66
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.51
KOG2384	223	consensus Major histocompatibility complex protein	97.49
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.68
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	95.91
KOG2505	591	consensus Ankyrin repeat protein [General function	95.8
KOG2505	591	consensus Ankyrin repeat protein [General function	95.42
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	92.14
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	89.57
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	88.16
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	86.09
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	83.89
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	81.96

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.7e-36  Score=310.05  Aligned_cols=255  Identities=20%  Similarity=0.268  Sum_probs=181.6

Q ss_pred             hhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCC
Q 048145           20 EELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDAD   99 (578)
Q Consensus        20 ~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~   99 (578)
                      +......+.++.+|||+|+..|+.++.+.|+++ +++     ++..|.+|.||||+||+.++.|..+.|++.|+      
T Consensus       111 gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~-~~d-----vnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a------  178 (929)
T KOG0510|consen  111 GADTPLRNLNKNAPLHLAADSGNYSCLKLLLDY-GAD-----VNLEDENGFTPLHLAARKNKVEAKKELINKGA------  178 (929)
T ss_pred             CCCCChhhhhccCchhhccccchHHHHHHHHHh-cCC-----ccccccCCCchhhHHHhcChHHHHHHHHhcCC------
Confidence            334455556666666666666666666666666 566     66666666666666666666666666666666      


Q ss_pred             CCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh----------ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhh
Q 048145          100 KNPLVVENKLGETPLYRAASVGKIEALRYFAEQ----------VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQ  169 (578)
Q Consensus       100 ~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~----------~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~  169 (578)
                        ++...|.+|.+|+|.|+++|..|+.+..+.+          ..+..|.||||.|+        ..|+           
T Consensus       179 --~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAv--------e~g~-----------  237 (929)
T KOG0510|consen  179 --DPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAV--------EGGD-----------  237 (929)
T ss_pred             --CCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhh--------hcCC-----------
Confidence              5666666666666666666666666666652          34556666666666        5565           


Q ss_pred             hhHHHHHHHHHHHhcccccccc------------ccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccc
Q 048145          170 IHKKAVALVKMLVEKRIDDCAT------------HEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNK  237 (578)
Q Consensus       170 ~~~~~~~~v~~Ll~~g~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  237 (578)
                           .++++.+++.|+....+            .+.+..|.||+|+|++.|+          .+.++.++.        
T Consensus       238 -----~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~----------~~svd~Ll~--------  294 (929)
T KOG0510|consen  238 -----IEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGG----------PESVDNLLG--------  294 (929)
T ss_pred             -----HHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCC----------hhHHHHHHH--------
Confidence                 88888888877644332            3556789999999976554          445555542        


Q ss_pred             cccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHH-HCCCcccccccCCChHHHHHHHhCcHHHHHHH
Q 048145          238 AHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRH-KYPQTLDNVNEKGQNILHVAIMYRQLEIFEII  316 (578)
Q Consensus       238 ~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~-~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~L  316 (578)
                             .+++++.++.++.|       |||.||+.|+.+.++.||+ ..-...|..|-.|.||||+|+++||.+++++|
T Consensus       295 -------~Ga~I~~kn~d~~s-------pLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlL  360 (929)
T KOG0510|consen  295 -------FGASINSKNKDEES-------PLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLL  360 (929)
T ss_pred             -------cCCcccccCCCCCC-------chHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHH
Confidence                   33444554556666       9999999999999999998 34446788899999999999999999999999


Q ss_pred             HHhhchhhhhhhh---cccCCCCchhhHHHhccccc
Q 048145          317 KEKMQLSLAEWAL---KIDNEGYTILHQVADMKYYK  349 (578)
Q Consensus       317 l~~~~~~~~~~~~---~~d~~G~T~LhlA~~~~~~~  349 (578)
                      +     ..|++..   ..|++|+||||+|+..|+.+
T Consensus       361 l-----~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~  391 (929)
T KOG0510|consen  361 L-----NKGALFLNMSEADSDGNTALHLAAKYGNTS  391 (929)
T ss_pred             H-----hcChhhhcccccccCCchhhhHHHHhccHH
Confidence            9     4566666   56999999999999999864

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.3e-36  Score=315.10  Aligned_cols=271  Identities=14%  Similarity=0.142  Sum_probs=200.7

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN   80 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g   80 (578)
                      |+.+||.+.++.++++  .+...+..+.+|.||||.|+..|+.++|++|++. |++     ++..|..|.||||+|+..|
T Consensus         8 ai~~gd~~~v~~ll~~--~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~-Ga~-----~n~~~~~~~t~L~~A~~~~   79 (434)
T PHA02874          8 CIYSGDIEAIEKIIKN--KGNCINISVDETTTPLIDAIRSGDAKIVELFIKH-GAD-----INHINTKIPHPLLTAIKIG   79 (434)
T ss_pred             HHhcCCHHHHHHHHHc--CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHC-CCC-----CCCCCCCCCCHHHHHHHcC
Confidence            5789999999999887  3455567788999999999999999999999998 999     9999999999999999999


Q ss_pred             CHHHHHHHHhhcCCCCCC---------------CCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCcc
Q 048145           81 NVDVAKTLVEFSKQSNDA---------------DKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAIS  140 (578)
Q Consensus        81 ~~~iv~~Ll~~g~~~~~~---------------~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t  140 (578)
                      +.+++++|+++|++....               ...+++.+|..|.||||+|+..|+.+++++|++.     ..+..|.|
T Consensus        80 ~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~t  159 (434)
T PHA02874         80 AHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCY  159 (434)
T ss_pred             CHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCC
Confidence            999999999998743110               0125778899999999999999999999999997     56789999


Q ss_pred             HHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccch
Q 048145          141 ILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSA  220 (578)
Q Consensus       141 ~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  220 (578)
                      |||+|+        ..|+                .+++++|+++|++++..   +..|.||+|+|+..          +.
T Consensus       160 pLh~A~--------~~~~----------------~~iv~~Ll~~g~~~n~~---~~~g~tpL~~A~~~----------g~  202 (434)
T PHA02874        160 PIHIAI--------KHNF----------------FDIIKLLLEKGAYANVK---DNNGESPLHNAAEY----------GD  202 (434)
T ss_pred             HHHHHH--------HCCc----------------HHHHHHHHHCCCCCCCC---CCCCCCHHHHHHHc----------CC
Confidence            999999        6777                89999999999877654   23456666666432          33


Q ss_pred             hhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChH
Q 048145          221 GEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNI  300 (578)
Q Consensus       221 ~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~  300 (578)
                      .+.++.++..+               .+++..+..|.|       |||.|+..++ ++++.|+  .+.+++.+|.+|+||
T Consensus       203 ~~iv~~Ll~~g---------------~~i~~~~~~g~T-------pL~~A~~~~~-~~i~~Ll--~~~~in~~d~~G~Tp  257 (434)
T PHA02874        203 YACIKLLIDHG---------------NHIMNKCKNGFT-------PLHNAIIHNR-SAIELLI--NNASINDQDIDGSTP  257 (434)
T ss_pred             HHHHHHHHhCC---------------CCCcCCCCCCCC-------HHHHHHHCCh-HHHHHHH--cCCCCCCcCCCCCCH
Confidence            44455443221               111222223333       7777766554 4455554  355666667777777


Q ss_pred             HHHHHHhC-cHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcc
Q 048145          301 LHVAIMYR-QLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMK  346 (578)
Q Consensus       301 Lh~A~~~g-~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~  346 (578)
                      ||+|+..+ +.+++++|+     +.|++++.+|+.|+||||+|++.+
T Consensus       258 Lh~A~~~~~~~~iv~~Ll-----~~gad~n~~d~~g~TpL~~A~~~~  299 (434)
T PHA02874        258 LHHAINPPCDIDIIDILL-----YHKADISIKDNKGENPIDTAFKYI  299 (434)
T ss_pred             HHHHHhcCCcHHHHHHHH-----HCcCCCCCCCCCCCCHHHHHHHhC
Confidence            77776654 566777666     455566777777777777776655

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.1e-35  Score=316.49  Aligned_cols=271  Identities=15%  Similarity=0.142  Sum_probs=227.8

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcC---ChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHH
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAME---DPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALA   77 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g---~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa   77 (578)
                      |+..++.+.++.+++.   +...+..+..|.||||+|+..|   +.++++.|++. |++     ++.+|..|.||||+|+
T Consensus        21 ~~~~~~~~~v~~Ll~~---ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~-Gad-----in~~~~~g~TpLh~A~   91 (471)
T PHA03095         21 NASNVTVEEVRRLLAA---GADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEA-GAD-----VNAPERCGFTPLHLYL   91 (471)
T ss_pred             cCCCCCHHHHHHHHHc---CCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHC-CCC-----CCCCCCCCCCHHHHHH
Confidence            4567888878777766   4556788999999999999999   99999999999 999     9999999999999999


Q ss_pred             HcC-CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHH--HcCcHHHHHHHHHh-----ccccCCccHHHHHHHHH
Q 048145           78 TIN-NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAA--SVGKIEALRYFAEQ-----VNQTAAISILSSKMYIA  149 (578)
Q Consensus        78 ~~g-~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~--~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~  149 (578)
                      ..| +.+++++|+++|+        +++.+|..|.||||+|+  ..++.+++++|++.     ..+..|.||||+|+.. 
T Consensus        92 ~~~~~~~iv~lLl~~ga--------~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~-  162 (471)
T PHA03095         92 YNATTLDVIKLLIKAGA--------DVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKS-  162 (471)
T ss_pred             HcCCcHHHHHHHHHcCC--------CCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc-
Confidence            999 5999999999999        89999999999999999  56789999999998     5678999999999832 


Q ss_pred             HHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHH
Q 048145          150 IWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQ  229 (578)
Q Consensus       150 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  229 (578)
                           ..+.                .+++++|+++|+++...   +..|.|++|+++...        ....+.++.++.
T Consensus       163 -----~~~~----------------~~iv~~Ll~~g~~~~~~---d~~g~t~Lh~~~~~~--------~~~~~i~~~Ll~  210 (471)
T PHA03095        163 -----RNAN----------------VELLRLLIDAGADVYAV---DDRFRSLLHHHLQSF--------KPRARIVRELIR  210 (471)
T ss_pred             -----CCCC----------------HHHHHHHHHcCCCCccc---CCCCCCHHHHHHHHC--------CCcHHHHHHHHH
Confidence                 1223                79999999999988765   456889998876432        123344444432


Q ss_pred             HhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHH--HHHHHHHHHCCCcccccccCCChHHHHHHHh
Q 048145          230 VKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGII--EILEEIRHKYPQTLDNVNEKGQNILHVAIMY  307 (578)
Q Consensus       230 ~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~--~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~  307 (578)
                      .               +.+.+..|..|+|       |||+|+..|+.  .+++.|++ .+.++|.+|.+|+||||+|+..
T Consensus       211 ~---------------g~~~~~~d~~g~t-------pLh~Aa~~~~~~~~~v~~ll~-~g~din~~d~~g~TpLh~A~~~  267 (471)
T PHA03095        211 A---------------GCDPAATDMLGNT-------PLHSMATGSSCKRSLVLPLLI-AGISINARNRYGQTPLHYAAVF  267 (471)
T ss_pred             c---------------CCCCcccCCCCCC-------HHHHHHhcCCchHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHc
Confidence            2               2333444556666       99999999975  68888887 8999999999999999999999


Q ss_pred             CcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhccccc
Q 048145          308 RQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYYK  349 (578)
Q Consensus       308 g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~~  349 (578)
                      |+.+++++|+     +.|++++.+|.+|+||||+|+..++.+
T Consensus       268 ~~~~~v~~LL-----~~gad~n~~~~~g~tpl~~A~~~~~~~  304 (471)
T PHA03095        268 NNPRACRRLI-----ALGADINAVSSDGNTPLSLMVRNNNGR  304 (471)
T ss_pred             CCHHHHHHHH-----HcCCCCcccCCCCCCHHHHHHHhCCHH
Confidence            9999999999     677889999999999999999999763

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1e-36  Score=257.92  Aligned_cols=198  Identities=21%  Similarity=0.220  Sum_probs=159.3

Q ss_pred             CChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHH
Q 048145            5 GDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDV   84 (578)
Q Consensus         5 G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~i   84 (578)
                      .....+.++++. .+..++.+.|.+|+||||+||+.|+.++|++|+...+..     ++.+|..||||||+||..|+.|+
T Consensus        14 ~~~~kveel~~s-~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~-----~ddkDdaGWtPlhia~s~g~~ev   87 (226)
T KOG4412|consen   14 CEEFKVEELIQS-DPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVK-----PDDKDDAGWTPLHIAASNGNDEV   87 (226)
T ss_pred             chHHHHHHHHhc-ChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCC-----CCCccccCCchhhhhhhcCcHHH
Confidence            344567777777 555666666678999999999999999999998765677     88888889999999999999999


Q ss_pred             HHHHHhh-cCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHHHHHHHHHhccCchHHHH
Q 048145           85 AKTLVEF-SKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKK  163 (578)
Q Consensus        85 v~~Ll~~-g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~  163 (578)
                      |+.|+.+ |+        +++..++.|.|+||+|+..|..                                        
T Consensus        88 Vk~Ll~r~~a--------dvna~tn~G~T~LHyAagK~r~----------------------------------------  119 (226)
T KOG4412|consen   88 VKELLNRSGA--------DVNATTNGGQTCLHYAAGKGRL----------------------------------------  119 (226)
T ss_pred             HHHHhcCCCC--------CcceecCCCcceehhhhcCChh----------------------------------------
Confidence            9999988 66        8888888888888888877664                                        


Q ss_pred             HHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccC
Q 048145          164 IWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQY  243 (578)
Q Consensus       164 ~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~  243 (578)
                                  +++++|+++|+.+..+                                                    
T Consensus       120 ------------eIaqlLle~ga~i~~k----------------------------------------------------  135 (226)
T KOG4412|consen  120 ------------EIAQLLLEKGALIRIK----------------------------------------------------  135 (226)
T ss_pred             ------------hHHHHHHhcCCCCccc----------------------------------------------------
Confidence                        5555556666544322                                                    


Q ss_pred             cccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchh
Q 048145          244 PQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLS  323 (578)
Q Consensus       244 ~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~  323 (578)
                               |..|+|       |||.||.-|..+++++|+. .++.+|.+|+.|+||||.|...|+.++..+|+     +
T Consensus       136 ---------D~~~qt-------plHRAAavGklkvie~Li~-~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV-----~  193 (226)
T KOG4412|consen  136 ---------DKQGQT-------PLHRAAAVGKLKVIEYLIS-QGAPLNTQDKYGFTPLHHALAEGHPDVAVLLV-----R  193 (226)
T ss_pred             ---------ccccCc-------hhHHHHhccchhhHHHHHh-cCCCCCcccccCccHHHHHHhccCchHHHHHH-----H
Confidence                     346667       9999999999999999997 77889999999999999998888888888888     5


Q ss_pred             hhhhhhcccCCCCchhhHHH
Q 048145          324 LAEWALKIDNEGYTILHQVA  343 (578)
Q Consensus       324 ~~~~~~~~d~~G~T~LhlA~  343 (578)
                      .|++++..|++| ||+..|.
T Consensus       194 ~gAd~~~edke~-t~~~~a~  212 (226)
T KOG4412|consen  194 AGADTDREDKEG-TALRIAC  212 (226)
T ss_pred             hccceeeccccC-chHHHHH
Confidence            677889999988 9987765

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=8.3e-35  Score=302.93  Aligned_cols=286  Identities=9%  Similarity=0.100  Sum_probs=211.8

Q ss_pred             ChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC--CHH
Q 048145            6 DRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN--NVD   83 (578)
Q Consensus         6 ~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g--~~~   83 (578)
                      +.+.++.++..   +...+.+|.+|.||||+||..|+.++|+.|+++ |++     ++.+|.+|.||||+|+..+  +.+
T Consensus        51 ~~~iv~~Ll~~---Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~-GAd-----in~~d~~g~TpLh~A~~~~~~~~e  121 (446)
T PHA02946         51 DERFVEELLHR---GYSPNETDDDGNYPLHIASKINNNRIVAMLLTH-GAD-----PNACDKQHKTPLYYLSGTDDEVIE  121 (446)
T ss_pred             CHHHHHHHHHC---cCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHC-cCC-----CCCCCCCCCCHHHHHHHcCCchHH
Confidence            33434444443   345577888899999999999999999999988 888     8889999999999988765  478


Q ss_pred             HHHHHHhhcCCCCCCCCCCccc-CCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccC
Q 048145           84 VAKTLVEFSKQSNDADKNPLVV-ENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQG  157 (578)
Q Consensus        84 iv~~Ll~~g~~~~~~~~~~~~~-~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G  157 (578)
                      ++++|+++|+        +++. .|..|.|||| |+..|+.+++++|++.     ..|..|.||||+|+..      ..+
T Consensus       122 ~v~lLl~~Ga--------din~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~------~~~  186 (446)
T PHA02946        122 RINLLVQYGA--------KINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMS------DNP  186 (446)
T ss_pred             HHHHHHHcCC--------CcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHh------cCC
Confidence            8999999988        6764 6888999997 6667888999998887     5678899999988732      233


Q ss_pred             chHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccc
Q 048145          158 CPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNK  237 (578)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  237 (578)
                      +                .+++++|+++|++++..   +..|.||+|+|+..+.        ...+.++.++.        
T Consensus       187 ~----------------~~~v~~Ll~~Gadin~~---d~~G~TpLH~Aa~~~~--------~~~~iv~lLl~--------  231 (446)
T PHA02946        187 K----------------ASTISWMMKLGISPSKP---DHDGNTPLHIVCSKTV--------KNVDIINLLLP--------  231 (446)
T ss_pred             C----------------HHHHHHHHHcCCCCccc---CCCCCCHHHHHHHcCC--------CcHHHHHHHHc--------
Confidence            3                68999999999998765   3468899999975432        12344444421        


Q ss_pred             cccccCcccccccccccccccccccchhHHHHHHhcCH-HHHHHHHHHHCCCcc--------------------ccc-cc
Q 048145          238 AHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGI-IEILEEIRHKYPQTL--------------------DNV-NE  295 (578)
Q Consensus       238 ~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~-~~iv~~Ll~~~~~~i--------------------~~~-d~  295 (578)
                              ..+++.+|..|.|       |||+|++.++ .++++.|++ .++.+                    +.. +.
T Consensus       232 --------gadin~~d~~G~T-------pLh~A~~~~~~~~~~~~Ll~-~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~  295 (446)
T PHA02946        232 --------STDVNKQNKFGDS-------PLTLLIKTLSPAHLINKLLS-TSNVITDQTVNICIFYDRDDVLEIINDKGKQ  295 (446)
T ss_pred             --------CCCCCCCCCCCCC-------HHHHHHHhCChHHHHHHHHh-CCCCCCCcHHHHHHHcCchHHHHHHHHcCcc
Confidence                    2344555566666       9999999988 589999998 54432                    111 23


Q ss_pred             CCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcccccCCCCCChHHhHHHHHHHHHHHHhhCC
Q 048145          296 KGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYYKQGTQAGPVLQFQDELEWFERVKDIAP  375 (578)
Q Consensus       296 ~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~~~~~~~~~~l~l~~~l~~~~~v~~~~~  375 (578)
                      .|+||||+|+++|+.+++++|+ +.           +.+|+||||+|+..++.                   +.++.++.
T Consensus       296 ~~~TpLh~Aa~~g~~eivk~Ll-~~-----------~~~~~t~L~~A~~~~~~-------------------~~v~~Ll~  344 (446)
T PHA02946        296 YDSTDFKMAVEVGSIRCVKYLL-DN-----------DIICEDAMYYAVLSEYE-------------------TMVDYLLF  344 (446)
T ss_pred             cCCCHHHHHHHcCCHHHHHHHH-HC-----------CCccccHHHHHHHhCHH-------------------HHHHHHHH
Confidence            5779999999999999999999 22           23689999999998853                   34555555


Q ss_pred             CccccccccCCCCChhhhhhhhh
Q 048145          376 PHYAMHRDKNKRMTANDLFDLTH  398 (578)
Q Consensus       376 ~~~~~~~n~~~g~t~~~l~~~~~  398 (578)
                      .+......+ +|+|+..++....
T Consensus       345 ~ga~~n~~~-~G~t~l~~a~~~~  366 (446)
T PHA02946        345 NHFSVDSVV-NGHTCMSECVRLN  366 (446)
T ss_pred             CCCCCCCcc-ccccHHHHHHHcC
Confidence            555544444 8999999875443

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=7.9e-35  Score=282.35  Aligned_cols=214  Identities=14%  Similarity=0.199  Sum_probs=185.0

Q ss_pred             HHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHH
Q 048145            9 GFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTL   88 (578)
Q Consensus         9 ~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~L   88 (578)
                      +++++|.+ .+.   +..|.+|.||||+|+..|+.++++.|++. +++     ++.++  |+||||+|+..|+.+++++|
T Consensus        13 ~~~~~Lis-~~a---~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~-ga~-----~n~~d--~~TpLh~Aa~~g~~eiV~lL   80 (284)
T PHA02791         13 QLKSFLSS-KDA---FKADVHGHSALYYAIADNNVRLVCTLLNA-GAL-----KNLLE--NEFPLHQAATLEDTKIVKIL   80 (284)
T ss_pred             HHHHHHHh-CCC---CCCCCCCCcHHHHHHHcCCHHHHHHHHHC-cCC-----CcCCC--CCCHHHHHHHCCCHHHHHHH
Confidence            37777777 333   45789999999999999999999999998 877     76654  78999999999999999999


Q ss_pred             HhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCC-ccHHHHHHHHHHHHHhccCchHHH
Q 048145           89 VEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAA-ISILSSKMYIAIWRQVIQGCPAIK  162 (578)
Q Consensus        89 l~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g-~t~Lh~A~~~~~~~~~~~G~~~~~  162 (578)
                      ++.|+        +++.+|..|.||||+|+..|+.+++++|++.     ..+..| .||||+|+        ..|+    
T Consensus        81 L~~Ga--------dvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa--------~~g~----  140 (284)
T PHA02791         81 LFSGM--------DDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAV--------MLND----  140 (284)
T ss_pred             HHCCC--------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHH--------HcCC----
Confidence            99999        8999999999999999999999999999998     345666 58999999        7777    


Q ss_pred             HHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCcccccccc
Q 048145          163 KIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQ  242 (578)
Q Consensus       163 ~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~  242 (578)
                                  .+++++|++++++....                                                   
T Consensus       141 ------------~eivk~LL~~~~~~~d~---------------------------------------------------  157 (284)
T PHA02791        141 ------------VSIVSYFLSEIPSTFDL---------------------------------------------------  157 (284)
T ss_pred             ------------HHHHHHHHhcCCccccc---------------------------------------------------
Confidence                        89999999875432100                                                   


Q ss_pred             CcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChH-HHHHHHhCcHHHHHHHHHhhc
Q 048145          243 YPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNI-LHVAIMYRQLEIFEIIKEKMQ  321 (578)
Q Consensus       243 ~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~-Lh~A~~~g~~~iv~~Ll~~~~  321 (578)
                                 ..|.|       |||+|+.+|+.++++.||+ +|++++..|..|.|| ||+|+.+|+.+++++|+    
T Consensus       158 -----------~~g~T-------pLh~Aa~~g~~eiv~lLL~-~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl----  214 (284)
T PHA02791        158 -----------AILLS-------CIHITIKNGHVDMMILLLD-YMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALF----  214 (284)
T ss_pred             -----------ccCcc-------HHHHHHHcCCHHHHHHHHH-CCCCCCcccCCCCChHHHHHHHcCCHHHHHHHH----
Confidence                       13455       9999999999999999998 899999999999987 99999999999999999    


Q ss_pred             hhhhhhhhcccCCCCchhhHH
Q 048145          322 LSLAEWALKIDNEGYTILHQV  342 (578)
Q Consensus       322 ~~~~~~~~~~d~~G~T~LhlA  342 (578)
                       +.|+++|.+|.+| |+|+.|
T Consensus       215 -~~Ga~in~~~~~~-~~l~~~  233 (284)
T PHA02791        215 -KYDINIYSVNLEN-VLLDDA  233 (284)
T ss_pred             -HCCCCCccCcccC-ccCCCH
Confidence             6778899999955 777554

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=3.6e-34  Score=293.01  Aligned_cols=298  Identities=16%  Similarity=0.161  Sum_probs=234.0

Q ss_pred             hhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCC
Q 048145           22 LLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKN  101 (578)
Q Consensus        22 ~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~  101 (578)
                      .....|..|+||||+|+.....+.|+.|++. |++     +...|.++.+|||+|+..|+.++.+.|+++|.        
T Consensus        80 ~~~a~D~~~n~~l~~a~~~~~~~~i~~Lls~-gad-----~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~--------  145 (929)
T KOG0510|consen   80 ISYAKDSADNTPLHAAVEYNQGDKIQVLLSY-GAD-----TPLRNLNKNAPLHLAADSGNYSCLKLLLDYGA--------  145 (929)
T ss_pred             hhhhhhcccCchhHHHhhcchHHHHHHHHhc-CCC-----CChhhhhccCchhhccccchHHHHHHHHHhcC--------
Confidence            4466788999999999999999999999999 999     99999999999999999999999999999999        


Q ss_pred             CcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHH
Q 048145          102 PLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVA  176 (578)
Q Consensus       102 ~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~  176 (578)
                      +++..|++|.||||+||.+++.|..+.|++.     ..|.+|..|+|.|+        ..|.                .+
T Consensus       146 dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa--------~s~s----------------~e  201 (929)
T KOG0510|consen  146 DVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAA--------RSGS----------------KE  201 (929)
T ss_pred             CccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHH--------Hhcc----------------hh
Confidence            9999999999999999999999988888887     56789999999999        6666                78


Q ss_pred             HHHHHHh-----ccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccc
Q 048145          177 LVKMLVE-----KRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQEN  251 (578)
Q Consensus       177 ~v~~Ll~-----~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~  251 (578)
                      +.+..+.     ++..++   ..+..+.+|+|.|...+          +.+..+......+......+........-++.
T Consensus       202 ~mEi~l~~~g~~r~~~in---~~~n~~~~pLhlAve~g----------~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~  268 (929)
T KOG0510|consen  202 CMEIFLPEHGYERQTHIN---FDNNEKATPLHLAVEGG----------DIEMLKMCLQNGKKIADVQLDAMQQEKELVND  268 (929)
T ss_pred             hhhhhhccccchhhcccc---cccCCCCcchhhhhhcC----------CHHHHHHHHhCccccchhhhHHHHHHHHHhhc
Confidence            8888887     333333   33457889999996554          44444444333222221111000011112355


Q ss_pred             cccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcc
Q 048145          252 DTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKI  331 (578)
Q Consensus       252 ~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~  331 (578)
                      .|++|+|       |||+||++|+.+.++.|+. .|++++.+++++.||||.||.+|+.+.|+-|++..   -.+++|..
T Consensus       269 ~d~dg~t-------pLH~a~r~G~~~svd~Ll~-~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~---~~rllne~  337 (929)
T KOG0510|consen  269 EDNDGCT-------PLHYAARQGGPESVDNLLG-FGASINSKNKDEESPLHFAAIYGRINTVERLLQES---DTRLLNES  337 (929)
T ss_pred             ccccCCc-------hHHHHHHcCChhHHHHHHH-cCCcccccCCCCCCchHHHHHcccHHHHHHHHhCc---Cccccccc
Confidence            5666666       9999999999999999998 99999999999999999999999999999999423   35679999


Q ss_pred             cCCCCchhhHHHhcccccCCCCCChHHhHHHHHHHHHHHHhhCCCccccc---cccCCCCChhhhhhhhhHH
Q 048145          332 DNEGYTILHQVADMKYYKQGTQAGPVLQFQDELEWFERVKDIAPPHYAMH---RDKNKRMTANDLFDLTHED  400 (578)
Q Consensus       332 d~~G~T~LhlA~~~~~~~~~~~~~~~l~l~~~l~~~~~v~~~~~~~~~~~---~n~~~g~t~~~l~~~~~~~  400 (578)
                      |-.|+||||+|++.||.+                   .++.++..+....   ..+.+|.|++.++......
T Consensus       338 D~~g~tpLHlaa~~gH~~-------------------v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~  390 (929)
T KOG0510|consen  338 DLHGMTPLHLAAKSGHDR-------------------VVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNT  390 (929)
T ss_pred             cccCCCchhhhhhcCHHH-------------------HHHHHHhcChhhhcccccccCCchhhhHHHHhccH
Confidence            999999999999999862                   3344444433322   2234999999887665544

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.2e-34  Score=317.45  Aligned_cols=305  Identities=11%  Similarity=0.070  Sum_probs=234.0

Q ss_pred             cccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCC
Q 048145            2 ALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINN   81 (578)
Q Consensus         2 a~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~   81 (578)
                      +.+|+.+.++.+++.   +...+..|..|.||||+||+.|+.++|++|+++ |++     ++..+.+|.||||+|+..|+
T Consensus       153 i~~~~~~i~k~Ll~~---Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~-Gad-----~n~~~~~g~t~L~~A~~~~~  223 (682)
T PHA02876        153 IQQDELLIAEMLLEG---GADVNAKDIYCITPIHYAAERGNAKMVNLLLSY-GAD-----VNIIALDDLSVLECAVDSKN  223 (682)
T ss_pred             HHCCcHHHHHHHHhC---CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHC-CCC-----cCccCCCCCCHHHHHHHcCC
Confidence            356777744444444   556678899999999999999999999999999 999     99999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCC---------------------CCCcccCCCCCCCHHHHHHHcCcH-HHHHHHHHh-----cc
Q 048145           82 VDVAKTLVEFSKQSNDAD---------------------KNPLVVENKLGETPLYRAASVGKI-EALRYFAEQ-----VN  134 (578)
Q Consensus        82 ~~iv~~Ll~~g~~~~~~~---------------------~~~~~~~n~~g~TpLh~A~~~g~~-~iv~~Ll~~-----~~  134 (578)
                      .++++.|++.+++....+                     ..+++..+..|.||||+|+..|+. +++++|++.     ..
T Consensus       224 ~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~  303 (682)
T PHA02876        224 IDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAK  303 (682)
T ss_pred             HHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCc
Confidence            999999888776332110                     015677788899999999999886 588888887     56


Q ss_pred             ccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCcccc
Q 048145          135 QTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKK  214 (578)
Q Consensus       135 ~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  214 (578)
                      |.+|.||||+|+        ..|+               ..++++.|++.|++++..   +..|.||+|+|+..+     
T Consensus       304 d~~g~TpLh~Aa--------~~g~---------------~~~~v~~Ll~~gadin~~---d~~g~TpLh~A~~~~-----  352 (682)
T PHA02876        304 NIKGETPLYLMA--------KNGY---------------DTENIRTLIMLGADVNAA---DRLYITPLHQASTLD-----  352 (682)
T ss_pred             CCCCCCHHHHHH--------HhCC---------------CHHHHHHHHHcCCCCCCc---ccCCCcHHHHHHHhC-----
Confidence            788999999999        5552               068899999999988765   346789999886422     


Q ss_pred             ccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccc
Q 048145          215 VVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVN  294 (578)
Q Consensus       215 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d  294 (578)
                          +..+.++.+..               .+.+++..|..|.|       |||+|+..|+.++++.|++ +|++++..+
T Consensus       353 ----~~~~iv~lLl~---------------~gadin~~d~~G~T-------pLh~Aa~~~~~~iv~~Ll~-~gad~~~~~  405 (682)
T PHA02876        353 ----RNKDIVITLLE---------------LGANVNARDYCDKT-------PIHYAAVRNNVVIINTLLD-YGADIEALS  405 (682)
T ss_pred             ----CcHHHHHHHHH---------------cCCCCccCCCCCCC-------HHHHHHHcCCHHHHHHHHH-CCCCccccC
Confidence                22334444432               12333444555666       9999999999999999998 899999999


Q ss_pred             cCCChHHHHHHHhCc-HHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcccccCCCCCChHHhHHHHHHHHHHHHhh
Q 048145          295 EKGQNILHVAIMYRQ-LEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYYKQGTQAGPVLQFQDELEWFERVKDI  373 (578)
Q Consensus       295 ~~G~t~Lh~A~~~g~-~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~~~~~~~~~~l~l~~~l~~~~~v~~~  373 (578)
                      ..|.||||+|+..++ ..++++|+     +.|+++|.+|.+|+||||+|+..+..                  .+.++.+
T Consensus       406 ~~g~T~Lh~A~~~~~~~~~vk~Ll-----~~gadin~~d~~G~TpLh~Aa~~~~~------------------~~iv~lL  462 (682)
T PHA02876        406 QKIGTALHFALCGTNPYMSVKTLI-----DRGANVNSKNKDLSTPLHYACKKNCK------------------LDVIEML  462 (682)
T ss_pred             CCCCchHHHHHHcCCHHHHHHHHH-----hCCCCCCcCCCCCChHHHHHHHhCCc------------------HHHHHHH
Confidence            999999999998765 56788888     56778999999999999999987632                  1344555


Q ss_pred             CCCccccccccCCCCChhhhhhh
Q 048145          374 APPHYAMHRDKNKRMTANDLFDL  396 (578)
Q Consensus       374 ~~~~~~~~~n~~~g~t~~~l~~~  396 (578)
                      +..+......+.+|.||..+..+
T Consensus       463 l~~Gad~n~~d~~g~tpl~~a~~  485 (682)
T PHA02876        463 LDNGADVNAINIQNQYPLLIALE  485 (682)
T ss_pred             HHCCCCCCCCCCCCCCHHHHHHH
Confidence            55555444444499999887543

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.3e-34  Score=320.68  Aligned_cols=335  Identities=14%  Similarity=0.100  Sum_probs=191.9

Q ss_pred             cccCChHHHHHHHhcCCchhhh-----ccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHH
Q 048145            2 ALKGDRQGFLRYFAQQTDEELL-----GYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHAL   76 (578)
Q Consensus         2 a~~G~~~~~~~ll~~~~~~~~~-----~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~A   76 (578)
                      +..|+.+.+...+.+  .+...     ...+..+.||||.|+..||.++|+.|++..+..     +...|..|+||||+|
T Consensus        10 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~t~LH~A~~~g~~e~V~~ll~~~~~~-----~~~~~~~~~tpLh~a   82 (682)
T PHA02876         10 MCRGNCIDILSAIDN--YDLHKHGANQCENESIPFTAIHQALQLRQIDIVEEIIQQNPEL-----IYITDHKCHSTLHTI   82 (682)
T ss_pred             HhcCchHHHHHHHHH--HHHhhhhhhhcccccccchHHHHHHHHHhhhHHHHHHHhCccc-----chhhchhhccccccc
Confidence            456777666666655  22221     233566788888888888888888888875544     677788888888855


Q ss_pred             H----------------------------------------------------------------------HcCCHHHHH
Q 048145           77 A----------------------------------------------------------------------TINNVDVAK   86 (578)
Q Consensus        77 a----------------------------------------------------------------------~~g~~~iv~   86 (578)
                      +                                                                      +.|+.++++
T Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k  162 (682)
T PHA02876         83 CIIPNVMDIVISLTLDCDIILDIKYASIILNKHKLDEACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAE  162 (682)
T ss_pred             cCCCCccccccccccchhhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHH
Confidence            5                                                                      788888888


Q ss_pred             HHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHH-------HHh
Q 048145           87 TLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIW-------RQV  154 (578)
Q Consensus        87 ~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~-------~~~  154 (578)
                      +|++.|+        +++.+|..|.||||+|+.+|+.++|++|++.     ..+.+|.||||+|+..+..       ...
T Consensus       163 ~Ll~~Ga--------dvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~  234 (682)
T PHA02876        163 MLLEGGA--------DVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNR  234 (682)
T ss_pred             HHHhCCC--------CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            8888888        7888888888888888888888888888887     5667888888888853211       000


Q ss_pred             ---ccC-chHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHH
Q 048145          155 ---IQG-CPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQV  230 (578)
Q Consensus       155 ---~~G-~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~  230 (578)
                         ..+ .+++.++....      .+++++|++.|.+++..   +..|.||+|+|+..++.         .+.++.+...
T Consensus       235 ~~~~~~~~~L~~ai~~~~------~~~~~~Ll~~g~~vn~~---d~~g~TpLh~Aa~~~~~---------~~iv~lLl~~  296 (682)
T PHA02876        235 SNINKNDLSLLKAIRNED------LETSLLLYDAGFSVNSI---DDCKNTPLHHASQAPSL---------SRLVPKLLER  296 (682)
T ss_pred             CCCCCCcHHHHHHHHcCC------HHHHHHHHHCCCCCCCC---CCCCCCHHHHHHhCCCH---------HHHHHHHHHC
Confidence               001 13444444333      67778888888776654   33577888887654431         1233333211


Q ss_pred             hcCCccccccccCcccccccccccccccccccchhHHHHHHhcC-HHHHHHHHHHHCCCcccccccCCChHHHHHHHh-C
Q 048145          231 KKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNG-IIEILEEIRHKYPQTLDNVNEKGQNILHVAIMY-R  308 (578)
Q Consensus       231 ~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G-~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~-g  308 (578)
                      +               .+++..|.+|.|       |||+|+.+| +.++++.|++ .|++++..|..|+||||+|+.. +
T Consensus       297 g---------------adin~~d~~g~T-------pLh~Aa~~g~~~~~v~~Ll~-~gadin~~d~~g~TpLh~A~~~~~  353 (682)
T PHA02876        297 G---------------ADVNAKNIKGET-------PLYLMAKNGYDTENIRTLIM-LGADVNAADRLYITPLHQASTLDR  353 (682)
T ss_pred             C---------------CCCCCcCCCCCC-------HHHHHHHhCCCHHHHHHHHH-cCCCCCCcccCCCcHHHHHHHhCC
Confidence            1               112222333333       555555444 2444444444 4444444455555555554443 2


Q ss_pred             cHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcccccCC--------------CCCChHHhHHHH-HHHHHHHHhh
Q 048145          309 QLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYYKQG--------------TQAGPVLQFQDE-LEWFERVKDI  373 (578)
Q Consensus       309 ~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~~~~--------------~~~~~~l~l~~~-l~~~~~v~~~  373 (578)
                      +.+++++|+     ..|+++|.+|..|+||||+|+..++.+.+              ...+.+++..-. -.....++.+
T Consensus       354 ~~~iv~lLl-----~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~L  428 (682)
T PHA02876        354 NKDIVITLL-----ELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTL  428 (682)
T ss_pred             cHHHHHHHH-----HcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHH
Confidence            344444444     23334444455555555555444432210              000112221110 0011234445


Q ss_pred             CCCccccccccCCCCChhhhhhhh
Q 048145          374 APPHYAMHRDKNKRMTANDLFDLT  397 (578)
Q Consensus       374 ~~~~~~~~~n~~~g~t~~~l~~~~  397 (578)
                      +..+......+.+|+||..++...
T Consensus       429 l~~gadin~~d~~G~TpLh~Aa~~  452 (682)
T PHA02876        429 IDRGANVNSKNKDLSTPLHYACKK  452 (682)
T ss_pred             HhCCCCCCcCCCCCChHHHHHHHh
Confidence            555554444444999999988653

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=3.4e-34  Score=306.70  Aligned_cols=278  Identities=15%  Similarity=0.089  Sum_probs=210.5

Q ss_pred             ccCChHHHHHHHhcCCchhhhccC-CCCCCcHHHHHHh--cCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHc
Q 048145            3 LKGDRQGFLRYFAQQTDEELLGYR-TFNGECAIHVAAA--MEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATI   79 (578)
Q Consensus         3 ~~G~~~~~~~ll~~~~~~~~~~~~-~~~g~T~Lh~Aa~--~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~   79 (578)
                      ..++.+.++.+++.  +....+.. |..|.||||.|+.  .++.++|++|+++ |++     ++.+|.+|+||||+|++.
T Consensus       151 ~~v~leiVk~LLe~--G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~-GAD-----VN~kD~~G~TPLH~Aa~~  222 (764)
T PHA02716        151 RGIDLDLIKYMVDV--GIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNN-GVN-----VNLQNNHLITPLHTYLIT  222 (764)
T ss_pred             cCCCHHHHHHHHHC--CCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHc-CCC-----CCCCCCCCCCHHHHHHHc
Confidence            35777866666655  31344555 8899999999865  4678999999999 999     999999999999999999


Q ss_pred             CC--HHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHH-------------------------------------HHc
Q 048145           80 NN--VDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRA-------------------------------------ASV  120 (578)
Q Consensus        80 g~--~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A-------------------------------------~~~  120 (578)
                      |+  .++|++|+++|+        +++.+|..|.||||.|                                     +++
T Consensus       223 g~~~~eIVklLLe~GA--------DVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~  294 (764)
T PHA02716        223 GNVCASVIKKIIELGG--------DMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARN  294 (764)
T ss_pred             CCCCHHHHHHHHHcCC--------CCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHc
Confidence            95  599999999999        8999999999999975                                     345


Q ss_pred             CcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCC
Q 048145          121 GKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKP  195 (578)
Q Consensus       121 g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~  195 (578)
                      |+.+++++|++.     .+|.+|.||||+|+..      ..|+                .+++++|+++|++++..   +
T Consensus       295 g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~------~~~~----------------~eIVklLLe~GADIN~k---D  349 (764)
T PHA02716        295 IDISVVYSFLQPGVKLHYKDSAGRTCLHQYILR------HNIS----------------TDIIKLLHEYGNDLNEP---D  349 (764)
T ss_pred             CCHHHHHHHHhCCCceeccCCCCCCHHHHHHHH------hCCC----------------chHHHHHHHcCCCCccC---C
Confidence            677788888876     5678899999987632      2234                79999999999998765   3


Q ss_pred             CCCCchhhcccCCCC----ccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHH--
Q 048145          196 TPGVTEISLGLGKGN----IEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLF--  269 (578)
Q Consensus       196 ~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~--  269 (578)
                      ..|.||+|+++....    .+......+..++++.|+..               +.+++.+|..|.|       |||.  
T Consensus       350 ~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~---------------GADIn~kn~~G~T-------PLh~y~  407 (764)
T PHA02716        350 NIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISL---------------GADITAVNCLGYT-------PLTSYI  407 (764)
T ss_pred             CCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHC---------------CCCCCCcCCCCCC-------hHHHHH
Confidence            478899998753210    00000112456677777532               3344555556666       9994  


Q ss_pred             --HHhcCHHHHHHHHHHHCC------------------------------------------------------------
Q 048145          270 --AVSNGIIEILEEIRHKYP------------------------------------------------------------  287 (578)
Q Consensus       270 --Aa~~G~~~iv~~Ll~~~~------------------------------------------------------------  287 (578)
                        |...++.++++.|++...                                                            
T Consensus       408 ~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~  487 (764)
T PHA02716        408 CTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIER  487 (764)
T ss_pred             HHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhh
Confidence              233578899998887310                                                            


Q ss_pred             CcccccccCCChHHHHHHHhCcHH-----HHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcccc
Q 048145          288 QTLDNVNEKGQNILHVAIMYRQLE-----IFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYY  348 (578)
Q Consensus       288 ~~i~~~d~~G~t~Lh~A~~~g~~~-----iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~  348 (578)
                      .++|..|..|+||||+|+.+|+.+     ++++|+     +.|+++|.+|++|+||||+|+++|+.
T Consensus       488 ~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL-----~~GADIN~~d~~G~TPLh~A~~~g~~  548 (764)
T PHA02716        488 YNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLL-----SIQYNINIPTKNGVTPLMLTMRNNRL  548 (764)
T ss_pred             ccccccCCCCCCHHHHHHHcCCccchhHHHHHHHH-----hCCCCCcccCCCCCCHHHHHHHcCCc
Confidence            123456788999999999999874     559999     67888999999999999999999965

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.9e-34  Score=305.23  Aligned_cols=265  Identities=15%  Similarity=0.219  Sum_probs=223.6

Q ss_pred             HHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHH-----HHHcCCH
Q 048145            8 QGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHA-----LATINNV   82 (578)
Q Consensus         8 ~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~-----Aa~~g~~   82 (578)
                      +.+..++++   +...+..+..+.||||.|+..|+.++|+.|+++ |++     ++..+..|.||||+     |+..|+.
T Consensus        16 ~~~~~~~~~---~~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~-g~~-----~~~~~~~~~t~L~~~~~~~a~~~~~~   86 (480)
T PHA03100         16 KNIKYIIME---DDLNDYSYKKPVLPLYLAKEARNIDVVKILLDN-GAD-----INSSTKNNSTPLHYLSNIKYNLTDVK   86 (480)
T ss_pred             HHHHHHHhc---CccchhhhcccchhhhhhhccCCHHHHHHHHHc-CCC-----CCCccccCcCHHHHHHHHHHHhhchH
Confidence            334445544   456667788999999999999999999999999 999     99999999999999     9999999


Q ss_pred             HHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHH--HcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhc
Q 048145           83 DVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAA--SVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVI  155 (578)
Q Consensus        83 ~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~--~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~  155 (578)
                      +++++|+++|+        +++..+..|.||||+|+  ..|+.+++++|++.     ..+..|.||||+|+        .
T Consensus        87 ~iv~~Ll~~ga--------~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~--------~  150 (480)
T PHA03100         87 EIVKLLLEYGA--------NVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYL--------E  150 (480)
T ss_pred             HHHHHHHHCCC--------CCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHH--------H
Confidence            99999999999        78999999999999999  99999999999998     56789999999999        6


Q ss_pred             cC--chHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcC
Q 048145          156 QG--CPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKG  233 (578)
Q Consensus       156 ~G--~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  233 (578)
                      .|  +                .+++++|+++|++++..+.   .|.||+|+|+..          +..+.++.++..+  
T Consensus       151 ~~~~~----------------~~iv~~Ll~~g~din~~d~---~g~tpL~~A~~~----------~~~~iv~~Ll~~g--  199 (480)
T PHA03100        151 SNKID----------------LKILKLLIDKGVDINAKNR---YGYTPLHIAVEK----------GNIDVIKFLLDNG--  199 (480)
T ss_pred             cCCCh----------------HHHHHHHHHCCCCcccccC---CCCCHHHHHHHh----------CCHHHHHHHHHcC--
Confidence            66  6                8999999999999876633   688999999544          4566777775432  


Q ss_pred             CccccccccCcccccccccccccccccccchhHHHHHHhcCH--HHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHH
Q 048145          234 CTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGI--IEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLE  311 (578)
Q Consensus       234 ~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~--~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~  311 (578)
                                   .+.+..+..+.+ .....||||.|+..|+  .++++.|++ .|++++.+|..|+||||+|+.+|+.+
T Consensus       200 -------------a~~~~~~~~~~~-~~~~~t~l~~a~~~~~~~~~iv~~Ll~-~g~din~~d~~g~TpL~~A~~~~~~~  264 (480)
T PHA03100        200 -------------ADINAGDIETLL-FTIFETPLHIAACYNEITLEVVNYLLS-YGVPINIKDVYGFTPLHYAVYNNNPE  264 (480)
T ss_pred             -------------CCccCCCCCCCc-HHHHHhHHHHHHHhCcCcHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence                         122222223300 0000449999999999  999999998 89999999999999999999999999


Q ss_pred             HHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcccc
Q 048145          312 IFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYY  348 (578)
Q Consensus       312 iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~  348 (578)
                      ++++|+     +.|++++.+|..|+||||+|+..++.
T Consensus       265 iv~~Ll-----~~gad~n~~d~~g~tpl~~A~~~~~~  296 (480)
T PHA03100        265 FVKYLL-----DLGANPNLVNKYGDTPLHIAILNNNK  296 (480)
T ss_pred             HHHHHH-----HcCCCCCccCCCCCcHHHHHHHhCCH
Confidence            999999     67778999999999999999998865

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=4.9e-33  Score=289.63  Aligned_cols=287  Identities=15%  Similarity=0.128  Sum_probs=217.7

Q ss_pred             cccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHh--cCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHc
Q 048145            2 ALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAA--MEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATI   79 (578)
Q Consensus         2 a~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~--~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~   79 (578)
                      ..+|+.+.+..++.. .       ....+.++||.++.  .++.++|+.|+++ |++     ++.+|.+|.||||+||+.
T Consensus        17 ~~~~n~~~~~~~l~~-~-------~~~g~~~~Lh~~~~~~~~~~~iv~~Ll~~-Gad-----vn~~d~~G~TpLh~Aa~~   82 (446)
T PHA02946         17 YNSKNLDVFRNMLQA-I-------EPSGNYHILHAYCGIKGLDERFVEELLHR-GYS-----PNETDDDGNYPLHIASKI   82 (446)
T ss_pred             HccCcHHHHHHHHhc-c-------CCCCCChHHHHHHHhcCCCHHHHHHHHHC-cCC-----CCccCCCCCCHHHHHHHc
Confidence            345677767777765 1       11234799998774  4567999999999 999     999999999999999999


Q ss_pred             CCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCc--HHHHHHHHHh------ccccCCccHHHHHHHHHHH
Q 048145           80 NNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGK--IEALRYFAEQ------VNQTAAISILSSKMYIAIW  151 (578)
Q Consensus        80 g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~--~~iv~~Ll~~------~~~~~g~t~Lh~A~~~~~~  151 (578)
                      |+.++|++|+++|+        +++.+|..|.||||+|+..++  .+++++|++.      ..+.+|.|||| |+     
T Consensus        83 g~~eiv~lLL~~GA--------din~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa-----  148 (446)
T PHA02946         83 NNNRIVAMLLTHGA--------DPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-AC-----  148 (446)
T ss_pred             CCHHHHHHHHHCcC--------CCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HH-----
Confidence            99999999999999        899999999999999998764  7899999988      24788999998 44     


Q ss_pred             HHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHh
Q 048145          152 RQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVK  231 (578)
Q Consensus       152 ~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  231 (578)
                         ..|+                .+++++|+++|++++..   +..|.|++|+++..++.        ..+.++.++.  
T Consensus       149 ---~~~~----------------~~vv~~Ll~~gad~~~~---d~~G~t~Lh~A~~~~~~--------~~~~v~~Ll~--  196 (446)
T PHA02946        149 ---TDPS----------------ERVFKKIMSIGFEARIV---DKFGKNHIHRHLMSDNP--------KASTISWMMK--  196 (446)
T ss_pred             ---HCCC----------------hHHHHHHHhcccccccc---CCCCCCHHHHHHHhcCC--------CHHHHHHHHH--
Confidence               3455                79999999999988765   34688999988653321        2234455432  


Q ss_pred             cCCccccccccCcccccccccccccccccccchhHHHHHHhcC--HHHHHHHHHHHCCCcccccccCCChHHHHHHHhCc
Q 048145          232 KGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNG--IIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQ  309 (578)
Q Consensus       232 ~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G--~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~  309 (578)
                                   .+.+++.+|.+|+|       |||+|+..|  +.++++.|++  ++++|.+|.+|+||||+|++.++
T Consensus       197 -------------~Gadin~~d~~G~T-------pLH~Aa~~~~~~~~iv~lLl~--gadin~~d~~G~TpLh~A~~~~~  254 (446)
T PHA02946        197 -------------LGISPSKPDHDGNT-------PLHIVCSKTVKNVDIINLLLP--STDVNKQNKFGDSPLTLLIKTLS  254 (446)
T ss_pred             -------------cCCCCcccCCCCCC-------HHHHHHHcCCCcHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHhCC
Confidence                         22344555556666       999999986  8899999984  78999999999999999999988


Q ss_pred             -HHHHHHHHHhhchh----------------hhhhhhccc-CCCCchhhHHHhcccccCCCCCChHHhHHHHHHHHHHHH
Q 048145          310 -LEIFEIIKEKMQLS----------------LAEWALKID-NEGYTILHQVADMKYYKQGTQAGPVLQFQDELEWFERVK  371 (578)
Q Consensus       310 -~~iv~~Ll~~~~~~----------------~~~~~~~~d-~~G~T~LhlA~~~~~~~~~~~~~~~l~l~~~l~~~~~v~  371 (578)
                       .+++++|+ +.+..                .-..++.++ ..|+||||+|+..|+.                   +.|+
T Consensus       255 ~~~~~~~Ll-~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~-------------------eivk  314 (446)
T PHA02946        255 PAHLINKLL-STSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSI-------------------RCVK  314 (446)
T ss_pred             hHHHHHHHH-hCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCH-------------------HHHH
Confidence             58999998 33211                001133333 4688999999999975                   3445


Q ss_pred             hhCCCccccccccCCCCChhhhhhhh
Q 048145          372 DIAPPHYAMHRDKNKRMTANDLFDLT  397 (578)
Q Consensus       372 ~~~~~~~~~~~n~~~g~t~~~l~~~~  397 (578)
                      .++..      +. +|+||..+....
T Consensus       315 ~Ll~~------~~-~~~t~L~~A~~~  333 (446)
T PHA02946        315 YLLDN------DI-ICEDAMYYAVLS  333 (446)
T ss_pred             HHHHC------CC-ccccHHHHHHHh
Confidence            44432      23 789998876543

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.8e-33  Score=293.76  Aligned_cols=264  Identities=16%  Similarity=0.166  Sum_probs=209.6

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCch------------------hhhhh
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEK------------------RLEAL   62 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~------------------~~~~l   62 (578)
                      |+..|+.+.++.+++.   +...+..+..|.||||.|+..|+.+++++|+++ |++-                  ....+
T Consensus        42 A~~~g~~~iv~~Ll~~---Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~-g~~~~~~~~~~~~~~~i~~ll~~g~d~  117 (434)
T PHA02874         42 AIRSGDAKIVELFIKH---GADINHINTKIPHPLLTAIKIGAHDIIKLLIDN-GVDTSILPIPCIEKDMIKTILDCGIDV  117 (434)
T ss_pred             HHHcCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCcchhccCCHHHHHHHHHCcCCC
Confidence            6788999977777766   445567788999999999999999999999986 4320                  00116


Q ss_pred             hccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccC
Q 048145           63 MQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTA  137 (578)
Q Consensus        63 ~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~  137 (578)
                      +.+|..|.||||+|+..|+.+++++|+++|+        +++.+|..|.||||+|+.+|+.+++++|++.     ..+..
T Consensus       118 n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~ga--------d~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~  189 (434)
T PHA02874        118 NIKDAELKTFLHYAIKKGDLESIKMLFEYGA--------DVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNN  189 (434)
T ss_pred             CCCCCCCccHHHHHHHCCCHHHHHHHHhCCC--------CCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCC
Confidence            6788999999999999999999999999999        8999999999999999999999999999997     56789


Q ss_pred             CccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccc
Q 048145          138 AISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVD  217 (578)
Q Consensus       138 g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  217 (578)
                      |.||||+|+        ..|+                .+++++|+++|+++...   ...|.||+|.|+..+.       
T Consensus       190 g~tpL~~A~--------~~g~----------------~~iv~~Ll~~g~~i~~~---~~~g~TpL~~A~~~~~-------  235 (434)
T PHA02874        190 GESPLHNAA--------EYGD----------------YACIKLLIDHGNHIMNK---CKNGFTPLHNAIIHNR-------  235 (434)
T ss_pred             CCCHHHHHH--------HcCC----------------HHHHHHHHhCCCCCcCC---CCCCCCHHHHHHHCCh-------
Confidence            999999999        7788                89999999999987654   3468899999865321       


Q ss_pred             cchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcC-HHHHHHHHHHHCCCcccccccC
Q 048145          218 VSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNG-IIEILEEIRHKYPQTLDNVNEK  296 (578)
Q Consensus       218 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G-~~~iv~~Ll~~~~~~i~~~d~~  296 (578)
                          +.++.++.                ..+++..|..|.|       |||+|+..+ +.+++++|++ .|++++.+|..
T Consensus       236 ----~~i~~Ll~----------------~~~in~~d~~G~T-------pLh~A~~~~~~~~iv~~Ll~-~gad~n~~d~~  287 (434)
T PHA02874        236 ----SAIELLIN----------------NASINDQDIDGST-------PLHHAINPPCDIDIIDILLY-HKADISIKDNK  287 (434)
T ss_pred             ----HHHHHHHc----------------CCCCCCcCCCCCC-------HHHHHHhcCCcHHHHHHHHH-CcCCCCCCCCC
Confidence                22333321                1223444445555       999999876 8999999998 89999999999


Q ss_pred             CChHHHHHHHhC-cHHHHHHHHHhhchhhhhhhhcccCCC-CchhhHHH
Q 048145          297 GQNILHVAIMYR-QLEIFEIIKEKMQLSLAEWALKIDNEG-YTILHQVA  343 (578)
Q Consensus       297 G~t~Lh~A~~~g-~~~iv~~Ll~~~~~~~~~~~~~~d~~G-~T~LhlA~  343 (578)
                      |+||||+|++++ +.++++.|+     ..+..++..+..+ .+++..+.
T Consensus       288 g~TpL~~A~~~~~~~~~ik~ll-----~~~~~~~~~~~~~~~~~~~~~~  331 (434)
T PHA02874        288 GENPIDTAFKYINKDPVIKDII-----ANAVLIKEADKLKDSDFLEHIE  331 (434)
T ss_pred             CCCHHHHHHHhCCccHHHHHHH-----HhcCchhhccccchhHHHHHHH
Confidence            999999999987 778889888     3333455555444 33444443

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.9e-33  Score=289.08  Aligned_cols=207  Identities=16%  Similarity=0.143  Sum_probs=180.3

Q ss_pred             CCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCC
Q 048145           30 GECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKL  109 (578)
Q Consensus        30 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~  109 (578)
                      .+++||.|+..|+.++++.|++. |++     ++.++.+|.||||+|+..|+.+++++|+++|+        +++..+..
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~-g~~-----~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga--------~~~~~~~~   67 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDI-GIN-----PNFEIYDGISPIKLAMKFRDSEAIKLLMKHGA--------IPDVKYPD   67 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHC-CCC-----CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCC--------CccccCCC
Confidence            57899999999999999999998 999     99999999999999999999999999999998        78888888


Q ss_pred             CCCHHHHHHHcCcHHHHHHHHHh------ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHh
Q 048145          110 GETPLYRAASVGKIEALRYFAEQ------VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVE  183 (578)
Q Consensus       110 g~TpLh~A~~~g~~~iv~~Ll~~------~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~  183 (578)
                      +.||||.|+..|+.+++++|++.      ..+.+|.||||+|+        ..|+                .+++++|++
T Consensus        68 ~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~--------~~~~----------------~~iv~~Ll~  123 (413)
T PHA02875         68 IESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLAT--------ILKK----------------LDIMKLLIA  123 (413)
T ss_pred             cccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHH--------HhCC----------------HHHHHHHHh
Confidence            99999999999999999999987      23567999999999        6677                899999999


Q ss_pred             ccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccc
Q 048145          184 KRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRT  263 (578)
Q Consensus       184 ~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g  263 (578)
                      +|++++..                                                             +..|.|     
T Consensus       124 ~gad~~~~-------------------------------------------------------------~~~g~t-----  137 (413)
T PHA02875        124 RGADPDIP-------------------------------------------------------------NTDKFS-----  137 (413)
T ss_pred             CCCCCCCC-------------------------------------------------------------CCCCCC-----
Confidence            99876543                                                             124555     


Q ss_pred             hhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCC-chhhHH
Q 048145          264 MRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGY-TILHQV  342 (578)
Q Consensus       264 ~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~-T~LhlA  342 (578)
                        |||+|+..|+.++++.|++ .|++++.+|..|+||||+|+..|+.+++++|+     +.|++++..+.+|. ||+|+|
T Consensus       138 --pLh~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll-----~~ga~~n~~~~~~~~t~l~~A  209 (413)
T PHA02875        138 --PLHLAVMMGDIKGIELLID-HKACLDIEDCCGCTPLIIAMAKGDIAICKMLL-----DSGANIDYFGKNGCVAALCYA  209 (413)
T ss_pred             --HHHHHHHcCCHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-----hCCCCCCcCCCCCCchHHHHH
Confidence              9999999999999999997 78888888999999999999999999999988     56777888888774 788889


Q ss_pred             Hhcccc
Q 048145          343 ADMKYY  348 (578)
Q Consensus       343 ~~~~~~  348 (578)
                      +..++.
T Consensus       210 ~~~~~~  215 (413)
T PHA02875        210 IENNKI  215 (413)
T ss_pred             HHcCCH
Confidence            888864

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2e-32  Score=286.10  Aligned_cols=232  Identities=19%  Similarity=0.216  Sum_probs=202.4

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN   80 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g   80 (578)
                      |+..|+.+.++.+++.   +...+..+.+|.||||+|+..|+.++|++|++. |++     ++.++.+|.||||+|+..|
T Consensus         9 A~~~g~~~iv~~Ll~~---g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~-----~~~~~~~~~t~L~~A~~~g   79 (413)
T PHA02875          9 AILFGELDIARRLLDI---GINPNFEIYDGISPIKLAMKFRDSEAIKLLMKH-GAI-----PDVKYPDIESELHDAVEEG   79 (413)
T ss_pred             HHHhCCHHHHHHHHHC---CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCC-----ccccCCCcccHHHHHHHCC
Confidence            6788999988777776   344566778999999999999999999999999 888     8888999999999999999


Q ss_pred             CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhc
Q 048145           81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVI  155 (578)
Q Consensus        81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~  155 (578)
                      +.++++.|++.|+       ...+..+..|.||||+|+..|+.+++++|++.     ..+..|.||||+|+        .
T Consensus        80 ~~~~v~~Ll~~~~-------~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~--------~  144 (413)
T PHA02875         80 DVKAVEELLDLGK-------FADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAV--------M  144 (413)
T ss_pred             CHHHHHHHHHcCC-------cccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHH--------H
Confidence            9999999999998       34456678899999999999999999999998     56788999999999        7


Q ss_pred             cCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCc
Q 048145          156 QGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCT  235 (578)
Q Consensus       156 ~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  235 (578)
                      .|+                .+++++|+++|++++..                                            
T Consensus       145 ~~~----------------~~~v~~Ll~~g~~~~~~--------------------------------------------  164 (413)
T PHA02875        145 MGD----------------IKGIELLIDHKACLDIE--------------------------------------------  164 (413)
T ss_pred             cCC----------------HHHHHHHHhcCCCCCCC--------------------------------------------
Confidence            777                89999999998865433                                            


Q ss_pred             cccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCC-hHHHHHHHhCcHHHHH
Q 048145          236 NKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQ-NILHVAIMYRQLEIFE  314 (578)
Q Consensus       236 ~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~-t~Lh~A~~~g~~~iv~  314 (578)
                                       |..|.|       |||+|+..|+.+++++|++ .|++++..+..|. ||+|+|+.+|+.++++
T Consensus       165 -----------------d~~g~T-------pL~~A~~~g~~eiv~~Ll~-~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~  219 (413)
T PHA02875        165 -----------------DCCGCT-------PLIIAMAKGDIAICKMLLD-SGANIDYFGKNGCVAALCYAIENNKIDIVR  219 (413)
T ss_pred             -----------------CCCCCC-------HHHHHHHcCCHHHHHHHHh-CCCCCCcCCCCCCchHHHHHHHcCCHHHHH
Confidence                             235556       9999999999999999998 8999999998874 8999999999999999


Q ss_pred             HHHHhhchhhhhhhhc---ccCCCCchhhHHHhcc
Q 048145          315 IIKEKMQLSLAEWALK---IDNEGYTILHQVADMK  346 (578)
Q Consensus       315 ~Ll~~~~~~~~~~~~~---~d~~G~T~LhlA~~~~  346 (578)
                      +|+     +.|+++|.   .|.+|.|||+++....
T Consensus       220 ~Ll-----~~gad~n~~~~~~~~~~t~l~~~~~~~  249 (413)
T PHA02875        220 LFI-----KRGADCNIMFMIEGEECTILDMICNMC  249 (413)
T ss_pred             HHH-----HCCcCcchHhhcCCCchHHHHHHHhhc
Confidence            999     45566665   4788999999987654

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.2e-32  Score=286.90  Aligned_cols=294  Identities=14%  Similarity=0.126  Sum_probs=212.2

Q ss_pred             ChHHHHHHHhcCC-chhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHH
Q 048145            6 DRQGFLRYFAQQT-DEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDV   84 (578)
Q Consensus         6 ~~~~~~~ll~~~~-~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~i   84 (578)
                      +.+.+.++++... .+...+..+..+.||||.||..|+.++|+.|+++ |++     ++.+|.+|.||||+||..|+.++
T Consensus        12 ~~~~i~~~i~~~~~~~~~~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~-gad-----vn~~d~~g~TpLh~A~~~g~~~~   85 (477)
T PHA02878         12 NYETILKYIEYIDHTENYSTSASLIPFIPLHQAVEARNLDVVKSLLTR-GHN-----VNQPDHRDLTPLHIICKEPNKLG   85 (477)
T ss_pred             cHHHHHHHHHHHhhhhhhcCcccccCcchHHHHHHcCCHHHHHHHHHC-CCC-----CCCCCCCCCCHHHHHHHCccHhH
Confidence            4444555555421 1122234456789999999999999999999999 999     99999999999999999999999


Q ss_pred             HHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-ccccCCccHHHHHHHHHHHHHhccCchHHHH
Q 048145           85 AKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-VNQTAAISILSSKMYIAIWRQVIQGCPAIKK  163 (578)
Q Consensus        85 v~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~  163 (578)
                      ++.|++.+.        ....  ..+.+|+|.|+..|+.++++.|+.. ..+........ ..        ..+.     
T Consensus        86 v~~Ll~~~~--------~~~~--~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~-~~--------~~~~-----  141 (477)
T PHA02878         86 MKEMIRSIN--------KCSV--FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVY-ID--------KKSK-----  141 (477)
T ss_pred             HHHHHHHHh--------cccc--ccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHH-Hh--------hccc-----
Confidence            999999887        3322  5678999999999999999999976 11111111111 11        0000     


Q ss_pred             HHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccC
Q 048145          164 IWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQY  243 (578)
Q Consensus       164 ~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~  243 (578)
                            ......+++++|+++|++++..+.  ..|.||+|+|+..          +..+.++.++..+            
T Consensus       142 ------~~~~~~~iv~~Ll~~gadin~~~~--~~g~tpLh~A~~~----------~~~~iv~~Ll~~g------------  191 (477)
T PHA02878        142 ------DDIIEAEITKLLLSYGADINMKDR--HKGNTALHYATEN----------KDQRLTELLLSYG------------  191 (477)
T ss_pred             ------hhhHHHHHHHHHHHcCCCCCccCC--CCCCCHHHHHHhC----------CCHHHHHHHHHCC------------
Confidence                  000114699999999998876632  1278999998543          4556667665321            


Q ss_pred             cccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHh-CcHHHHHHHHHhhch
Q 048145          244 PQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMY-RQLEIFEIIKEKMQL  322 (578)
Q Consensus       244 ~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~-g~~~iv~~Ll~~~~~  322 (578)
                         .+++..|..|.|       |||.|++.|+.++++.|++ .|++++.+|..|+||||+|+.. ++.+++++|+     
T Consensus       192 ---ad~n~~d~~g~t-------pLh~A~~~~~~~iv~~Ll~-~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll-----  255 (477)
T PHA02878        192 ---ANVNIPDKTNNS-------PLHHAVKHYNKPIVHILLE-NGASTDARDKCGNTPLHISVGYCKDYDILKLLL-----  255 (477)
T ss_pred             ---CCCCCcCCCCCC-------HHHHHHHhCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHH-----
Confidence               233344445555       9999999999999999998 8999999999999999999976 6899999999     


Q ss_pred             hhhhhhhcccC-CCCchhhHHHhcccccCCCCCChHHhHHHHHHHHHHHHhhCCCccccccccCCCCChhhhhhh
Q 048145          323 SLAEWALKIDN-EGYTILHQVADMKYYKQGTQAGPVLQFQDELEWFERVKDIAPPHYAMHRDKNKRMTANDLFDL  396 (578)
Q Consensus       323 ~~~~~~~~~d~-~G~T~LhlA~~~~~~~~~~~~~~~l~l~~~l~~~~~v~~~~~~~~~~~~n~~~g~t~~~l~~~  396 (578)
                      +.|+++|.++. .|+||||+|+...                     +.++.++..+......+.+|.||.+++..
T Consensus       256 ~~gadvn~~~~~~g~TpLh~A~~~~---------------------~~v~~Ll~~gadin~~d~~g~TpL~~A~~  309 (477)
T PHA02878        256 EHGVDVNAKSYILGLTALHSSIKSE---------------------RKLKLLLEYGADINSLNSYKLTPLSSAVK  309 (477)
T ss_pred             HcCCCCCccCCCCCCCHHHHHccCH---------------------HHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            56778998886 7999999994221                     23444444455444444499999887654

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=8.3e-32  Score=261.27  Aligned_cols=216  Identities=15%  Similarity=0.096  Sum_probs=177.6

Q ss_pred             cCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHH
Q 048145           40 MEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAAS  119 (578)
Q Consensus        40 ~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~  119 (578)
                      .++.+++++|+++ +++       .+|.+|+||||+|+..|+.++++.|++.|+        +++..+  |+||||+|+.
T Consensus         9 ~~~~~~~~~Lis~-~a~-------~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga--------~~n~~d--~~TpLh~Aa~   70 (284)
T PHA02791          9 WKSKQLKSFLSSK-DAF-------KADVHGHSALYYAIADNNVRLVCTLLNAGA--------LKNLLE--NEFPLHQAAT   70 (284)
T ss_pred             cCHHHHHHHHHhC-CCC-------CCCCCCCcHHHHHHHcCCHHHHHHHHHCcC--------CCcCCC--CCCHHHHHHH
Confidence            4678999999997 644       689999999999999999999999999998        666554  7899999999


Q ss_pred             cCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccC
Q 048145          120 VGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEK  194 (578)
Q Consensus       120 ~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~  194 (578)
                      .|+.+++++|++.     ..|..|.||||+|+        ..|+                .+++++|+++|++++..   
T Consensus        71 ~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa--------~~g~----------------~eivk~Ll~~gadin~~---  123 (284)
T PHA02791         71 LEDTKIVKILLFSGMDDSQFDDKGNTALYYAV--------DSGN----------------MQTVKLFVKKNWRLMFY---  123 (284)
T ss_pred             CCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH--------HcCC----------------HHHHHHHHHCCCCcCcc---
Confidence            9999999999987     56889999999999        7788                89999999998876543   


Q ss_pred             CCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCccccccccccccc-ccccccchhHHHHHHhc
Q 048145          195 PTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKD-MTSSMRTMRILLFAVSN  273 (578)
Q Consensus       195 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g-~t~~~~g~~pLh~Aa~~  273 (578)
                                                                                +..| .|       |||+|+..
T Consensus       124 ----------------------------------------------------------~~~g~~T-------pL~~Aa~~  138 (284)
T PHA02791        124 ----------------------------------------------------------GKTGWKT-------SFYHAVML  138 (284)
T ss_pred             ----------------------------------------------------------CCCCCcH-------HHHHHHHc
Confidence                                                                      1133 34       99999999


Q ss_pred             CHHHHHHHHHHHCCCcccccc-cCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCch-hhHHHhcccccCC
Q 048145          274 GIIEILEEIRHKYPQTLDNVN-EKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTI-LHQVADMKYYKQG  351 (578)
Q Consensus       274 G~~~iv~~Ll~~~~~~i~~~d-~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~-LhlA~~~~~~~~~  351 (578)
                      |+.+++++|++..+..   .| ..|+||||+|+++|+.+++++|+     +.|+++|.+|..|.|| ||+|+..|+.   
T Consensus       139 g~~eivk~LL~~~~~~---~d~~~g~TpLh~Aa~~g~~eiv~lLL-----~~gAd~n~~d~~g~t~~L~~Aa~~~~~---  207 (284)
T PHA02791        139 NDVSIVSYFLSEIPST---FDLAILLSCIHITIKNGHVDMMILLL-----DYMTSTNTNNSLLFIPDIKLAIDNKDL---  207 (284)
T ss_pred             CCHHHHHHHHhcCCcc---cccccCccHHHHHHHcCCHHHHHHHH-----HCCCCCCcccCCCCChHHHHHHHcCCH---
Confidence            9999999999854432   23 35899999999999999999999     6677899999999987 9999999975   


Q ss_pred             CCCChHHhHHHHHHHHHHHHhhCCCccccccccCCCCChhhh
Q 048145          352 TQAGPVLQFQDELEWFERVKDIAPPHYAMHRDKNKRMTANDL  393 (578)
Q Consensus       352 ~~~~~~l~l~~~l~~~~~v~~~~~~~~~~~~n~~~g~t~~~l  393 (578)
                                      +.++.++..+......+ .+.++++.
T Consensus       208 ----------------e~v~lLl~~Ga~in~~~-~~~~~l~~  232 (284)
T PHA02791        208 ----------------EMLQALFKYDINIYSVN-LENVLLDD  232 (284)
T ss_pred             ----------------HHHHHHHHCCCCCccCc-ccCccCCC
Confidence                            44555555555444444 34455543

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=9.9e-32  Score=286.15  Aligned_cols=269  Identities=14%  Similarity=0.105  Sum_probs=218.8

Q ss_pred             HHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC---CHHHHHHHHhhcCCCCCCCCCCcccCCCCCC
Q 048145           35 HVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN---NVDVAKTLVEFSKQSNDADKNPLVVENKLGE  111 (578)
Q Consensus        35 h~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g---~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~  111 (578)
                      ..|+..++.++|+.|++. |++     ++.+|..|.||||+|+..|   +.+++++|++.|+        +++.++..|.
T Consensus        19 ~~~~~~~~~~~v~~Ll~~-ga~-----vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Ga--------din~~~~~g~   84 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAA-GAD-----VNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGA--------DVNAPERCGF   84 (471)
T ss_pred             HHcCCCCCHHHHHHHHHc-CCC-----cccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCC--------CCCCCCCCCC
Confidence            567788999999999999 999     9999999999999999998   9999999999999        8999999999


Q ss_pred             CHHHHHHHcC-cHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhcc
Q 048145          112 TPLYRAASVG-KIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKR  185 (578)
Q Consensus       112 TpLh~A~~~g-~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g  185 (578)
                      ||||+|+.+| +.+++++|++.     ..+..|.||||+|+..      ..++                .+++++|+++|
T Consensus        85 TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~------~~~~----------------~~iv~~Ll~~g  142 (471)
T PHA03095         85 TPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSG------FNIN----------------PKVIRLLLRKG  142 (471)
T ss_pred             CHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhC------CcCC----------------HHHHHHHHHcC
Confidence            9999999999 59999999998     5678899999999821      2334                78999999999


Q ss_pred             ccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchh
Q 048145          186 IDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMR  265 (578)
Q Consensus       186 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~  265 (578)
                      ++++..   +..|.||+|++...+        ....+.++.++..+               .+.+..|..|.|       
T Consensus       143 ad~~~~---d~~g~tpL~~a~~~~--------~~~~~iv~~Ll~~g---------------~~~~~~d~~g~t-------  189 (471)
T PHA03095        143 ADVNAL---DLYGMTPLAVLLKSR--------NANVELLRLLIDAG---------------ADVYAVDDRFRS-------  189 (471)
T ss_pred             CCCCcc---CCCCCCHHHHHHHcC--------CCCHHHHHHHHHcC---------------CCCcccCCCCCC-------
Confidence            998765   346789999876543        12345556554322               122222445555       


Q ss_pred             HHHHHHhc--CHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcH--HHHHHHHHhhchhhhhhhhcccCCCCchhhH
Q 048145          266 ILLFAVSN--GIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQL--EIFEIIKEKMQLSLAEWALKIDNEGYTILHQ  341 (578)
Q Consensus       266 pLh~Aa~~--G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~--~iv~~Ll~~~~~~~~~~~~~~d~~G~T~Lhl  341 (578)
                      |||+|+..  ++.++++.|++ .|++++.+|..|+||||+|+..|+.  .+++.|+     ..|+++|.+|.+|+||||+
T Consensus       190 ~Lh~~~~~~~~~~~i~~~Ll~-~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll-----~~g~din~~d~~g~TpLh~  263 (471)
T PHA03095        190 LLHHHLQSFKPRARIVRELIR-AGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLL-----IAGISINARNRYGQTPLHY  263 (471)
T ss_pred             HHHHHHHHCCCcHHHHHHHHH-cCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHH-----HcCCCCCCcCCCCCCHHHH
Confidence            99999875  78999999998 8999999999999999999999975  5777777     5677899999999999999


Q ss_pred             HHhcccccCCCCCChHHhHHHHHHHHHHHHhhCCCccccccccCCCCChhhhhhhh
Q 048145          342 VADMKYYKQGTQAGPVLQFQDELEWFERVKDIAPPHYAMHRDKNKRMTANDLFDLT  397 (578)
Q Consensus       342 A~~~~~~~~~~~~~~~l~l~~~l~~~~~v~~~~~~~~~~~~n~~~g~t~~~l~~~~  397 (578)
                      |+..|+.                   +.++.++..+......+.+|+||.+++...
T Consensus       264 A~~~~~~-------------------~~v~~LL~~gad~n~~~~~g~tpl~~A~~~  300 (471)
T PHA03095        264 AAVFNNP-------------------RACRRLIALGADINAVSSDGNTPLSLMVRN  300 (471)
T ss_pred             HHHcCCH-------------------HHHHHHHHcCCCCcccCCCCCCHHHHHHHh
Confidence            9998864                   345555555555544445999999987543

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.8e-32  Score=232.25  Aligned_cols=204  Identities=22%  Similarity=0.193  Sum_probs=169.6

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCC-CCCCHHHHHHHcCcHHHHHHHHHh------ccccCCccH
Q 048145           69 GNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENK-LGETPLYRAASVGKIEALRYFAEQ------VNQTAAISI  141 (578)
Q Consensus        69 G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~-~g~TpLh~A~~~g~~~iv~~Ll~~------~~~~~g~t~  141 (578)
                      +.++.+.+|+.....-++.+++..+       ..++.++. +|+||||+||..|+.+++++|++.      .+|..|+||
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~-------kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtP   75 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDP-------KSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTP   75 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcCh-------hhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCch
Confidence            5788899999888888999998877       56777766 999999999999999999999976      467889999


Q ss_pred             HHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhc-cccccccccCCCCCCchhhcccCCCCccccccccch
Q 048145          142 LSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEK-RIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSA  220 (578)
Q Consensus       142 Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  220 (578)
                      ||+|+        ..|+                .++|+.|+.+ |++++.+                             
T Consensus        76 lhia~--------s~g~----------------~evVk~Ll~r~~advna~-----------------------------  102 (226)
T KOG4412|consen   76 LHIAA--------SNGN----------------DEVVKELLNRSGADVNAT-----------------------------  102 (226)
T ss_pred             hhhhh--------hcCc----------------HHHHHHHhcCCCCCccee-----------------------------
Confidence            99999        7787                8999999988 7766544                             


Q ss_pred             hhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChH
Q 048145          221 GEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNI  300 (578)
Q Consensus       221 ~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~  300 (578)
                                                      ++.|+|       +||+|+..|+.||+++|++ .|+.++..|..|+||
T Consensus       103 --------------------------------tn~G~T-------~LHyAagK~r~eIaqlLle-~ga~i~~kD~~~qtp  142 (226)
T KOG4412|consen  103 --------------------------------TNGGQT-------CLHYAAGKGRLEIAQLLLE-KGALIRIKDKQGQTP  142 (226)
T ss_pred             --------------------------------cCCCcc-------eehhhhcCChhhHHHHHHh-cCCCCcccccccCch
Confidence                                            346777       9999999999999999998 889999999999999


Q ss_pred             HHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcccccCCCCCChHHhHHHHHHHHHHHHhhCCCcccc
Q 048145          301 LHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYYKQGTQAGPVLQFQDELEWFERVKDIAPPHYAM  380 (578)
Q Consensus       301 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~~~~~~~~~~l~l~~~l~~~~~v~~~~~~~~~~  380 (578)
                      ||-|+.-|..+++++|+     ..++-+|.+|+.|+||||.|.--++.                   +....++..+...
T Consensus       143 lHRAAavGklkvie~Li-----~~~a~~n~qDk~G~TpL~~al~e~~~-------------------d~a~lLV~~gAd~  198 (226)
T KOG4412|consen  143 LHRAAAVGKLKVIEYLI-----SQGAPLNTQDKYGFTPLHHALAEGHP-------------------DVAVLLVRAGADT  198 (226)
T ss_pred             hHHHHhccchhhHHHHH-----hcCCCCCcccccCccHHHHHHhccCc-------------------hHHHHHHHhccce
Confidence            99999999999999999     55667999999999999999656654                   2233344444444


Q ss_pred             ccccCCCCChhhhhhhh
Q 048145          381 HRDKNKRMTANDLFDLT  397 (578)
Q Consensus       381 ~~n~~~g~t~~~l~~~~  397 (578)
                      .+.+++| |+..+....
T Consensus       199 ~~edke~-t~~~~a~~~  214 (226)
T KOG4412|consen  199 DREDKEG-TALRIACNE  214 (226)
T ss_pred             eeccccC-chHHHHHHH
Confidence            4545477 887665433

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.4e-31  Score=283.32  Aligned_cols=269  Identities=14%  Similarity=0.186  Sum_probs=212.2

Q ss_pred             ccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhc--CChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145            3 LKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAM--EDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN   80 (578)
Q Consensus         3 ~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~--g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g   80 (578)
                      ...+.+.++.+++.  +. ..+.. .+|.||||.++..  ++.++|+.|+++ |++     ++.++ .+.||||.|+.++
T Consensus        12 ~~~~~~~v~~LL~~--Ga-dvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~-GAd-----vn~~~-~~~tpL~~a~~~~   80 (494)
T PHA02989         12 DTVDKNALEFLLRT--GF-DVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDN-GAD-----VNYKG-YIETPLCAVLRNR   80 (494)
T ss_pred             CcCcHHHHHHHHHc--CC-Ccccc-cCCCCHHHHHHhcCCCChHHHHHHHHc-CCC-----ccCCC-CCCCcHHHHHhcc
Confidence            35778877777766  33 34444 5799999876654  368999999999 999     99886 5799999998754


Q ss_pred             ------CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHc---CcHHHHHHHHHh------ccccCCccHHHHH
Q 048145           81 ------NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASV---GKIEALRYFAEQ------VNQTAAISILSSK  145 (578)
Q Consensus        81 ------~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~---g~~~iv~~Ll~~------~~~~~g~t~Lh~A  145 (578)
                            +.+++++|+++|+        +++.+|..|.||||.|+..   |+.+++++|+++      ..+..|.||||+|
T Consensus        81 ~~~~~~~~~iv~~Ll~~Ga--------din~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a  152 (494)
T PHA02989         81 EITSNKIKKIVKLLLKFGA--------DINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMY  152 (494)
T ss_pred             CcchhhHHHHHHHHHHCCC--------CCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHH
Confidence                  5789999999999        8999999999999988765   679999999998      2467899999998


Q ss_pred             HHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHH
Q 048145          146 MYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVE  225 (578)
Q Consensus       146 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  225 (578)
                      +..      ..++                .+++++|+++|++++..  .+..|.||+|.+...+      ...+..++++
T Consensus       153 ~~~------~~~~----------------~~iv~~Ll~~Gadi~~~--~~~~g~tpL~~a~~~~------~~~~~~~iv~  202 (494)
T PHA02989        153 LES------FSVK----------------KDVIKILLSFGVNLFEK--TSLYGLTPMNIYLRND------IDVISIKVIK  202 (494)
T ss_pred             HHh------ccCC----------------HHHHHHHHHcCCCcccc--ccccCCChHHHHHhcc------cccccHHHHH
Confidence            732      2345                79999999999998763  2346788888775432      2334567777


Q ss_pred             HHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhc------CHHHHHHHHHHHCCCcccccccCCCh
Q 048145          226 LMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSN------GIIEILEEIRHKYPQTLDNVNEKGQN  299 (578)
Q Consensus       226 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~------G~~~iv~~Ll~~~~~~i~~~d~~G~t  299 (578)
                      .++..               +.+++..|..+.+       |||.++..      +..+++++|++  ++++|.+|..|+|
T Consensus       203 ~Ll~~---------------Ga~vn~~~~~~~t-------~l~~~~~~~~~~~~~~~~il~~l~~--~advn~~d~~G~T  258 (494)
T PHA02989        203 YLIKK---------------GVNIETNNNGSES-------VLESFLDNNKILSKKEFKVLNFILK--YIKINKKDKKGFN  258 (494)
T ss_pred             HHHhC---------------CCCccccCCcccc-------HHHHHHHhchhhcccchHHHHHHHh--CCCCCCCCCCCCC
Confidence            77633               2233443444555       99987754      35678887775  5899999999999


Q ss_pred             HHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhccccc
Q 048145          300 ILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYYK  349 (578)
Q Consensus       300 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~~  349 (578)
                      |||+|+..|+.+++++|+     +.|+++|.+|..|+||||+|+..++.+
T Consensus       259 pL~~Aa~~~~~~~v~~LL-----~~Gadin~~d~~G~TpL~~A~~~~~~~  303 (494)
T PHA02989        259 PLLISAKVDNYEAFNYLL-----KLGDDIYNVSKDGDTVLTYAIKHGNID  303 (494)
T ss_pred             HHHHHHHhcCHHHHHHHH-----HcCCCccccCCCCCCHHHHHHHcCCHH
Confidence            999999999999999999     678899999999999999999998753

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.98  E-value=7.2e-32  Score=288.90  Aligned_cols=283  Identities=11%  Similarity=0.043  Sum_probs=200.3

Q ss_pred             cCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCC--hHHHHHHHccCCCchhhhhhhccCCCCChHHHHH-----
Q 048145            4 KGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMED--PELIKKFLGRLPVEKRLEALMQTDDNGNTAVHAL-----   76 (578)
Q Consensus         4 ~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~--~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~A-----   76 (578)
                      .|+.+.+ ++|.+  .+...+..|..|.||||+|+..|+  .++|+.|++. |++     ++.+|..|+||||+|     
T Consensus       189 ~~~~eIV-klLLe--~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~-GAD-----VN~kD~~G~TPLh~Ai~~a~  259 (764)
T PHA02716        189 YVDIDIL-EWLCN--NGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIEL-GGD-----MDMKCVNGMSPIMTYIINID  259 (764)
T ss_pred             cCCHHHH-HHHHH--cCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHc-CCC-----CCCCCCCCCCHHHHHHHhhh
Confidence            3556644 44444  245667889999999999999996  4899999999 999     999999999999975     


Q ss_pred             --------------------------------HHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHH--cCc
Q 048145           77 --------------------------------ATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAAS--VGK  122 (578)
Q Consensus        77 --------------------------------a~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~--~g~  122 (578)
                                                      ++.|+.+++++|+++|+        +++.+|..|+||||+|+.  +++
T Consensus       260 n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GA--------dIN~kD~~G~TPLH~Aaa~~~~~  331 (764)
T PHA02716        260 NINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGV--------KLHYKDSAGRTCLHQYILRHNIS  331 (764)
T ss_pred             ccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCC--------ceeccCCCCCCHHHHHHHHhCCC
Confidence                                            45578899999999999        899999999999999864  568


Q ss_pred             HHHHHHHHHh-----ccccCCccHHHHHHHHHHHHH------hccCchHHHHHHHhhhhhHHHHHHHHHHHhcccccccc
Q 048145          123 IEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQ------VIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCAT  191 (578)
Q Consensus       123 ~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~------~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~  191 (578)
                      .+++++|++.     .+|..|.||||+|+.......      ...|+                .+++++|+++|++++..
T Consensus       332 ~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~----------------~eVVklLL~~GADIn~k  395 (764)
T PHA02716        332 TDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIR----------------LDVIQCLISLGADITAV  395 (764)
T ss_pred             chHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccCh----------------HHHHHHHHHCCCCCCCc
Confidence            9999999988     578899999999873210000      01133                89999999999998776


Q ss_pred             ccCCCCCCchhhcc-cCCCCccccccccchhhHHHHHHHHhc------------------------------C-Cccccc
Q 048145          192 HEKPTPGVTEISLG-LGKGNIEKKVVDVSAGEWVELMIQVKK------------------------------G-CTNKAH  239 (578)
Q Consensus       192 ~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~------------------------------~-~~~~~l  239 (578)
                      +   ..|.||+|.+ +...+       .+..++++.++..+.                              + ......
T Consensus       396 n---~~G~TPLh~y~~~a~n-------~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~  465 (764)
T PHA02716        396 N---CLGYTPLTSYICTAQN-------YMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYT  465 (764)
T ss_pred             C---CCCCChHHHHHHHHHh-------cChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhh
Confidence            3   4688999832 11111       111222222221100                              0 000000


Q ss_pred             cc-------cC--------cccccccccccccccccccchhHHHHHHhcCHH-----HHHHHHHHHCCCcccccccCCCh
Q 048145          240 VD-------QY--------PQAVDQENDTTKDMTSSMRTMRILLFAVSNGII-----EILEEIRHKYPQTLDNVNEKGQN  299 (578)
Q Consensus       240 ~~-------~~--------~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~-----~iv~~Ll~~~~~~i~~~d~~G~t  299 (578)
                      ..       ..        ....+.+.       .+..|+||||+|+..|+.     |++++|++ .|+++|.+|++|+|
T Consensus       466 ~~~~~~~~~~~~~v~~~~ii~~~nvN~-------~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~-~GADIN~~d~~G~T  537 (764)
T PHA02716        466 DEYEPYDSTKIHDVYHCAIIERYNNAV-------CETSGMTPLHVSIISHTNANIVMDSFVYLLS-IQYNINIPTKNGVT  537 (764)
T ss_pred             hhhhhccccccchhhHHHHHhhccccc-------cCCCCCCHHHHHHHcCCccchhHHHHHHHHh-CCCCCcccCCCCCC
Confidence            00       00        00011122       244566699999999987     55699998 89999999999999


Q ss_pred             HHHHHHHhCcH-----HHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcccc
Q 048145          300 ILHVAIMYRQL-----EIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYY  348 (578)
Q Consensus       300 ~Lh~A~~~g~~-----~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~  348 (578)
                      |||+|+++|+.     ++|+.|+     +.|++++..      .|++|...++.
T Consensus       538 PLh~A~~~g~~~~~~~eIvk~LL-----~~ga~~~~~------~l~~~~~~~~~  580 (764)
T PHA02716        538 PLMLTMRNNRLSGHQWYIVKNIL-----DKRPNVDIV------IIFLDKCYANG  580 (764)
T ss_pred             HHHHHHHcCCccccHHHHHHHHH-----hcCCCcchH------HHHHHhhhhhh
Confidence            99999999976     9999999     344445543      47888766543

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.98  E-value=1.2e-31  Score=286.12  Aligned_cols=252  Identities=18%  Similarity=0.185  Sum_probs=212.2

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHH-----HHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHH
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHV-----AAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHA   75 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~-----Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~   75 (578)
                      |+..|+.+.++.+++.   +...+..+..|.||||+     |+..|+.++++.|++. |++     ++..|..|.||||+
T Consensus        42 A~~~~~~~ivk~Ll~~---g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~-ga~-----i~~~d~~g~tpL~~  112 (480)
T PHA03100         42 AKEARNIDVVKILLDN---GADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEY-GAN-----VNAPDNNGITPLLY  112 (480)
T ss_pred             hhccCCHHHHHHHHHc---CCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHC-CCC-----CCCCCCCCCchhhH
Confidence            6788999977777776   34556778889999999     9999999999999999 999     99999999999999


Q ss_pred             HH--HcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcC--cHHHHHHHHHh-----ccccCCccHHHHHH
Q 048145           76 LA--TINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVG--KIEALRYFAEQ-----VNQTAAISILSSKM  146 (578)
Q Consensus        76 Aa--~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g--~~~iv~~Ll~~-----~~~~~g~t~Lh~A~  146 (578)
                      |+  ..|+.+++++|+++|+        +++..+..|.||||+|+..|  +.+++++|++.     ..+..|.||||+|+
T Consensus       113 A~~~~~~~~~iv~~Ll~~g~--------~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~  184 (480)
T PHA03100        113 AISKKSNSYSIVEYLLDNGA--------NVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAV  184 (480)
T ss_pred             HHhcccChHHHHHHHHHcCC--------CCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHH
Confidence            99  9999999999999999        89999999999999999999  99999999998     46679999999999


Q ss_pred             HHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCC------CchhhcccCCCCccccccccch
Q 048145          147 YIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPG------VTEISLGLGKGNIEKKVVDVSA  220 (578)
Q Consensus       147 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~~~~~~~  220 (578)
                              ..|+                .+++++|+++|++++....   .+      .+++|+|+..++.        .
T Consensus       185 --------~~~~----------------~~iv~~Ll~~ga~~~~~~~---~~~~~~~~~t~l~~a~~~~~~--------~  229 (480)
T PHA03100        185 --------EKGN----------------IDVIKFLLDNGADINAGDI---ETLLFTIFETPLHIAACYNEI--------T  229 (480)
T ss_pred             --------HhCC----------------HHHHHHHHHcCCCccCCCC---CCCcHHHHHhHHHHHHHhCcC--------c
Confidence                    6777                8999999999998876532   23      6788887543321        1


Q ss_pred             hhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChH
Q 048145          221 GEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNI  300 (578)
Q Consensus       221 ~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~  300 (578)
                      .+.++.++..               +.+++..|..|.|       |||+|+..|+.+++++|++ .|++++.+|..|+||
T Consensus       230 ~~iv~~Ll~~---------------g~din~~d~~g~T-------pL~~A~~~~~~~iv~~Ll~-~gad~n~~d~~g~tp  286 (480)
T PHA03100        230 LEVVNYLLSY---------------GVPINIKDVYGFT-------PLHYAVYNNNPEFVKYLLD-LGANPNLVNKYGDTP  286 (480)
T ss_pred             HHHHHHHHHc---------------CCCCCCCCCCCCC-------HHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCcH
Confidence            4555655432               2333444555666       9999999999999999998 888999999999999


Q ss_pred             HHHHHHhCcHHHHHHHHHhhchhhhhhhhccc
Q 048145          301 LHVAIMYRQLEIFEIIKEKMQLSLAEWALKID  332 (578)
Q Consensus       301 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d  332 (578)
                      ||+|+++++.+++++|+ +    .|++++..+
T Consensus       287 l~~A~~~~~~~iv~~Ll-~----~g~~i~~i~  313 (480)
T PHA03100        287 LHIAILNNNKEIFKLLL-N----NGPSIKTII  313 (480)
T ss_pred             HHHHHHhCCHHHHHHHH-h----cCCCHHHHH
Confidence            99999999999999999 4    444555444

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.98  E-value=1.6e-31  Score=283.76  Aligned_cols=235  Identities=11%  Similarity=0.049  Sum_probs=186.1

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN   80 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g   80 (578)
                      ||..|+.+.++.+++.   +...+..|.+|.||||+||..|+.++++.|++. +..     ...  ..+.+|||.|+..|
T Consensus        44 A~~~g~~e~vk~Ll~~---gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~-~~~-----~~~--~~~~~~l~~a~~~~  112 (477)
T PHA02878         44 AVEARNLDVVKSLLTR---GHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRS-INK-----CSV--FYTLVAIKDAFNNR  112 (477)
T ss_pred             HHHcCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHH-Hhc-----ccc--ccchhhHHHHHHcC
Confidence            6889999988777776   445678899999999999999999999999988 433     222  56789999999999


Q ss_pred             CHHHHHHHHhhcCCCCCC-------------------------CCCCcccCCCC-CCCHHHHHHHcCcHHHHHHHHHh--
Q 048145           81 NVDVAKTLVEFSKQSNDA-------------------------DKNPLVVENKL-GETPLYRAASVGKIEALRYFAEQ--  132 (578)
Q Consensus        81 ~~~iv~~Ll~~g~~~~~~-------------------------~~~~~~~~n~~-g~TpLh~A~~~g~~~iv~~Ll~~--  132 (578)
                      +.++++.|+..+......                         ...+++.++.. |.||||+|+.+|+.+++++|++.  
T Consensus       113 ~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~ga  192 (477)
T PHA02878        113 NVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGA  192 (477)
T ss_pred             CHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCC
Confidence            888777776653211000                         00156677777 88888888888888888888876  


Q ss_pred             ---ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCC
Q 048145          133 ---VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKG  209 (578)
Q Consensus       133 ---~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~  209 (578)
                         ..+..|.||||.|+        ..|+                .+++++|+++|++++..                  
T Consensus       193 d~n~~d~~g~tpLh~A~--------~~~~----------------~~iv~~Ll~~ga~in~~------------------  230 (477)
T PHA02878        193 NVNIPDKTNNSPLHHAV--------KHYN----------------KPIVHILLENGASTDAR------------------  230 (477)
T ss_pred             CCCCcCCCCCCHHHHHH--------HhCC----------------HHHHHHHHHcCCCCCCC------------------
Confidence               45677888888888        5566                77888888877765433                  


Q ss_pred             CccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhc-CHHHHHHHHHHHCCC
Q 048145          210 NIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSN-GIIEILEEIRHKYPQ  288 (578)
Q Consensus       210 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~-G~~~iv~~Ll~~~~~  288 (578)
                                                                 |..|.|       |||+|+.. ++.++++.|++ .|+
T Consensus       231 -------------------------------------------d~~g~T-------pLh~A~~~~~~~~iv~~Ll~-~ga  259 (477)
T PHA02878        231 -------------------------------------------DKCGNT-------PLHISVGYCKDYDILKLLLE-HGV  259 (477)
T ss_pred             -------------------------------------------CCCCCC-------HHHHHHHhcCCHHHHHHHHH-cCC
Confidence                                                       335666       99999976 79999999998 899


Q ss_pred             ccccccc-CCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcc
Q 048145          289 TLDNVNE-KGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMK  346 (578)
Q Consensus       289 ~i~~~d~-~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~  346 (578)
                      +++..+. .|+||||.|  .++.+++++|+     +.|+++|.+|.+|+||||+|+..+
T Consensus       260 dvn~~~~~~g~TpLh~A--~~~~~~v~~Ll-----~~gadin~~d~~g~TpL~~A~~~~  311 (477)
T PHA02878        260 DVNAKSYILGLTALHSS--IKSERKLKLLL-----EYGADINSLNSYKLTPLSSAVKQY  311 (477)
T ss_pred             CCCccCCCCCCCHHHHH--ccCHHHHHHHH-----HCCCCCCCcCCCCCCHHHHHHHHc
Confidence            9999886 899999999  57889999999     677889999999999999999754

>PHA02730 ankyrin-like protein; Provisional

Probab=99.97  E-value=2.5e-30  Score=271.78  Aligned_cols=327  Identities=15%  Similarity=0.155  Sum_probs=217.1

Q ss_pred             hhccCCCCCCcHHHHHHhcC---ChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC--CHHHHHHHHhhcCCCC
Q 048145           22 LLGYRTFNGECAIHVAAAME---DPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN--NVDVAKTLVEFSKQSN   96 (578)
Q Consensus        22 ~~~~~~~~g~T~Lh~Aa~~g---~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g--~~~iv~~Ll~~g~~~~   96 (578)
                      +...+|..|+||||+|+..|   +.++|+.|+++ |++     ++.+|..|+||||+|+..|  +.|+|++|++.|+.  
T Consensus        33 in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~-GAd-----in~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~--  104 (672)
T PHA02730         33 LSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSR-GVE-----RLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSN--  104 (672)
T ss_pred             hhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhC-CCC-----CcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCC--
Confidence            44578889999999999997   59999999999 999     9999999999999999977  79999999999761  


Q ss_pred             CCCCCCcccCCCCCCCHHHHHHH--cCcHHHHHHHHHh-------ccc----cCCccHHHHHHHHH------HHH-----
Q 048145           97 DADKNPLVVENKLGETPLYRAAS--VGKIEALRYFAEQ-------VNQ----TAAISILSSKMYIA------IWR-----  152 (578)
Q Consensus        97 ~~~~~~~~~~n~~g~TpLh~A~~--~g~~~iv~~Ll~~-------~~~----~~g~t~Lh~A~~~~------~~~-----  152 (578)
                          .+++..+..+.+|||.++.  +++.+++++|++.       ..+    ..|.+|++++....      ++.     
T Consensus       105 ----~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~  180 (672)
T PHA02730        105 ----ASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECY  180 (672)
T ss_pred             ----CCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCc
Confidence                1446677779999999888  8999999999963       111    37899999987422      110     


Q ss_pred             ----------HhccCc-hHHH-HHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhc--ccCCCCccccc--c
Q 048145          153 ----------QVIQGC-PAIK-KIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISL--GLGKGNIEKKV--V  216 (578)
Q Consensus       153 ----------~~~~G~-~~~~-~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~--~  216 (578)
                                ....++ |++. .+...........|++++|+++|++++.++   ..|.||||+  +...++.+...  +
T Consensus       181 v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd---~~G~TpLh~~~~~~~~~~eiv~~Li  257 (672)
T PHA02730        181 STGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRD---EGGSLPIQYYWSCSTIDIEIVKLLI  257 (672)
T ss_pred             ccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCC---CCCCCHHHHHHHcCcccHHHHHHHH
Confidence                      001111 3332 222211112224899999999999998763   478899985  33222221111  1


Q ss_pred             c---------------------------------cchhhHHHHHHHHhcC--------------Ccc-------------
Q 048145          217 D---------------------------------VSAGEWVELMIQVKKG--------------CTN-------------  236 (578)
Q Consensus       217 ~---------------------------------~~~~~~~~~l~~~~~~--------------~~~-------------  236 (578)
                      .                                 .-+.++++.++.....              +.+             
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~  337 (672)
T PHA02730        258 KDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQ  337 (672)
T ss_pred             hccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhc
Confidence            1                                 1112222222221111              000             


Q ss_pred             -------ccc--cccCc-------------ccccccccccccccccccchhHHHHHHhcCH----HHHHHHHHHHCCC--
Q 048145          237 -------KAH--VDQYP-------------QAVDQENDTTKDMTSSMRTMRILLFAVSNGI----IEILEEIRHKYPQ--  288 (578)
Q Consensus       237 -------~~l--~~~~~-------------~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~----~~iv~~Ll~~~~~--  288 (578)
                             .+|  +.++.             ++++++.. ..       |.||||+|+..++    .++++.|++ .|+  
T Consensus       338 ~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~~-------G~TpLH~Aa~~nnn~i~~eIvelLIs-~Ga~~  408 (672)
T PHA02730        338 QDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDKT-TD-------NNYPLHDYFVNNNNIVDVNVVRFIVE-NNGHM  408 (672)
T ss_pred             cchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-CC-------CCcHHHHHHHHcCCcchHHHHHHHHH-cCCCc
Confidence                   000  01111             12333332 34       4559999998875    899999998 554  


Q ss_pred             cccccccCCChHHHH---HHHhC---------cHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcccccCCCCCCh
Q 048145          289 TLDNVNEKGQNILHV---AIMYR---------QLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYYKQGTQAGP  356 (578)
Q Consensus       289 ~i~~~d~~G~t~Lh~---A~~~g---------~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~~~~~~~~~  356 (578)
                      +++..|.+|+||||.   |...+         ..+++++|+     +.|+++|.+|+.|+||||+|+..++.        
T Consensus       409 dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LI-----s~GADINakD~~G~TPLh~Aa~~~~~--------  475 (672)
T PHA02730        409 AINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILS-----KYMDDIDMIDNENKTLLYYAVDVNNI--------  475 (672)
T ss_pred             cccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHH-----hcccchhccCCCCCCHHHHHHHhCCH--------
Confidence            699999999999994   33332         235689999     67888999999999999999998754        


Q ss_pred             HHhHHHHHHHHHHHHhhCCCcccccccc-CCCCChhhhhhh
Q 048145          357 VLQFQDELEWFERVKDIAPPHYAMHRDK-NKRMTANDLFDL  396 (578)
Q Consensus       357 ~l~l~~~l~~~~~v~~~~~~~~~~~~n~-~~g~t~~~l~~~  396 (578)
                                 +.++.++..+......+ ..|.||.+....
T Consensus       476 -----------eive~LI~~GAdIN~~d~~~g~TaL~~Aa~  505 (672)
T PHA02730        476 -----------QFARRLLEYGASVNTTSRSIINTAIQKSSY  505 (672)
T ss_pred             -----------HHHHHHHHCCCCCCCCCCcCCcCHHHHHHH
Confidence                       33444454444333333 258999987654

>PHA02798 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.3e-30  Score=277.39  Aligned_cols=266  Identities=17%  Similarity=0.184  Sum_probs=179.5

Q ss_pred             ChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhc--CChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHc----
Q 048145            6 DRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAM--EDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATI----   79 (578)
Q Consensus         6 ~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~--g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~----   79 (578)
                      +.+.++.++.. .  ...+.  ..|.|+++.+...  ++.++|+.|+++ |++     ++.+|..|.||||.|+..    
T Consensus        17 ~~~~v~~ll~~-~--~~~~~--~~~~~~~~~yl~~~~~~~~iv~~Ll~~-Gad-----vn~~d~~g~TpL~~~~~n~~~~   85 (489)
T PHA02798         17 KLSTVKLLIKS-C--NPNEI--VNEYSIFQKYLQRDSPSTDIVKLFINL-GAN-----VNGLDNEYSTPLCTILSNIKDY   85 (489)
T ss_pred             cHHHHHHHHhc-C--Chhhh--cccchHHHHHHhCCCCCHHHHHHHHHC-CCC-----CCCCCCCCCChHHHHHHhHHhH
Confidence            34556666644 1  11111  3466766644433  467888888887 778     888888888888887753    


Q ss_pred             -CCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcC---cHHHHHHHHHh-----ccccCCccHHHHHHHHHH
Q 048145           80 -NNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVG---KIEALRYFAEQ-----VNQTAAISILSSKMYIAI  150 (578)
Q Consensus        80 -g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g---~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~  150 (578)
                       ++.+++++|+++|+        +++.+|..|.||||+|+.+|   +.+++++|+++     ..|.+|.||||+|+..+ 
T Consensus        86 ~~~~~iv~~Ll~~Ga--------diN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~-  156 (489)
T PHA02798         86 KHMLDIVKILIENGA--------DINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSN-  156 (489)
T ss_pred             HhHHHHHHHHHHCCC--------CCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcC-
Confidence             66788888888887        78888888888888888765   67788888876     56777888888877321 


Q ss_pred             HHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHH
Q 048145          151 WRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQV  230 (578)
Q Consensus       151 ~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~  230 (578)
                          ..+.                .+++++|+++|++++....  ..+.+++|.+....      ......++++.++..
T Consensus       157 ----~~~~----------------~~vv~~Ll~~gadin~~~~--~~~~t~Lh~~~~~~------~~~~~~~ivk~Li~~  208 (489)
T PHA02798        157 ----HHID----------------IEIIKLLLEKGVDINTHNN--KEKYDTLHCYFKYN------IDRIDADILKLFVDN  208 (489)
T ss_pred             ----Ccch----------------HHHHHHHHHhCCCcccccC--cCCCcHHHHHHHhc------cccCCHHHHHHHHHC
Confidence                1123                6778888888877765421  23556666543211      122334555555432


Q ss_pred             hcCCccccccccCcccccccccccccccccccchhHHH-------HHHhcCHHHHHHHHHHHCCCcccccccCCChHHHH
Q 048145          231 KKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILL-------FAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHV  303 (578)
Q Consensus       231 ~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh-------~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~  303 (578)
                      +               .+++..+..+.+       +++       .+...++.+++++|++  ++++|.+|..|+||||+
T Consensus       209 G---------------a~i~~~~~~~~~-------~~~~~l~~l~~~~~~~~~~i~~~l~~--~~dvN~~d~~G~TPL~~  264 (489)
T PHA02798        209 G---------------FIINKENKSHKK-------KFMEYLNSLLYDNKRFKKNILDFIFS--YIDINQVDELGFNPLYY  264 (489)
T ss_pred             C---------------CCcccCCccccc-------hHHHHHHHHHhhcccchHHHHHHHHh--cCCCCCcCcCCccHHHH
Confidence            1               122222333444       554       3456677888888775  37889999999999999


Q ss_pred             HHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcccc
Q 048145          304 AIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYY  348 (578)
Q Consensus       304 A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~  348 (578)
                      |+.+|+.+++++|+     +.|+++|.+|..|+||||+|+..++.
T Consensus       265 A~~~~~~~~v~~LL-----~~GAdin~~d~~G~TpL~~A~~~~~~  304 (489)
T PHA02798        265 SVSHNNRKIFEYLL-----QLGGDINIITELGNTCLFTAFENESK  304 (489)
T ss_pred             HHHcCcHHHHHHHH-----HcCCcccccCCCCCcHHHHHHHcCcH
Confidence            99999999999998     56778899999999999999888764

>PHA02917 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.9e-30  Score=280.20  Aligned_cols=289  Identities=15%  Similarity=0.150  Sum_probs=207.1

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHH--hcCChHHHHHHHccCCCchhhhhhhccCC---CC------
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAA--AMEDPELIKKFLGRLPVEKRLEALMQTDD---NG------   69 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa--~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~---~G------   69 (578)
                      |+..|+.+.++.+++.   +...+.+|.+|.||||.|+  ..|+.++|++|+++ |++     ++.+|.   .|      
T Consensus       110 a~~~~~~e~vk~Ll~~---Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~-Ga~-----vn~~d~~~~~g~~~~~~  180 (661)
T PHA02917        110 KSKNVDVDLIKVLVEH---GFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIEN-GCS-----VLYEDEDDEYGYAYDDY  180 (661)
T ss_pred             HhhcCCHHHHHHHHHc---CCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHc-CCC-----ccccccccccccccccc
Confidence            4567788866656655   5667888999999999654  57899999999999 998     876653   34      


Q ss_pred             -----ChHHHHHHH-----------cCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcH--HHHHHHHH
Q 048145           70 -----NTAVHALAT-----------INNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKI--EALRYFAE  131 (578)
Q Consensus        70 -----~TpLh~Aa~-----------~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~--~iv~~Ll~  131 (578)
                           .||||+|+.           .|+.+++++|+++|+        +++.+|.+|.||||+|+.+|+.  ++|++|++
T Consensus       181 ~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Ga--------dvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~  252 (661)
T PHA02917        181 QPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGI--------KPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK  252 (661)
T ss_pred             cccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCC--------CcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh
Confidence                 599999986           468999999999999        9999999999999999999985  79999987


Q ss_pred             h--------ccccCCccHHHHHHHHH-HHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchh
Q 048145          132 Q--------VNQTAAISILSSKMYIA-IWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEI  202 (578)
Q Consensus       132 ~--------~~~~~g~t~Lh~A~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l  202 (578)
                      .        ..+..|.+|+|+|++-+ .+.......                .+++++|++.|++..         .+++
T Consensus       253 g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~----------------~~iv~~Li~~Ga~~~---------~~~~  307 (661)
T PHA02917        253 GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVD----------------LDLVKLFLENGKPHG---------IMCS  307 (661)
T ss_pred             CCcccccccccCcccccchHHHHHHHhhccccccch----------------HHHHHHHHhCCCCCc---------eeEe
Confidence            5        24556889999998421 100001112                799999999998632         2233


Q ss_pred             hcccCCCCccccc------------------cccc--hhhHHHHHHHHhcCCccccccccC---------------cccc
Q 048145          203 SLGLGKGNIEKKV------------------VDVS--AGEWVELMIQVKKGCTNKAHVDQY---------------PQAV  247 (578)
Q Consensus       203 ~~~~~~~~~~~~~------------------~~~~--~~~~~~~l~~~~~~~~~~~l~~~~---------------~~~~  247 (578)
                      +++...++.+...                  ...+  ..+.++.|+..+.+.-..-+....               ..+.
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga  387 (661)
T PHA02917        308 IVPLWRNDKETISLILKTMNSDVLQHILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGG  387 (661)
T ss_pred             eecccccchHHHHHHHHHhchHHHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCC
Confidence            3333333211110                  1122  234667776554432221110000               0112


Q ss_pred             cccccccccccccccchhHHHHHHhcC-----------------------HHHHHHHHHHHCCCcccccccCCChHHHHH
Q 048145          248 DQENDTTKDMTSSMRTMRILLFAVSNG-----------------------IIEILEEIRHKYPQTLDNVNEKGQNILHVA  304 (578)
Q Consensus       248 ~~~~~~~~g~t~~~~g~~pLh~Aa~~G-----------------------~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A  304 (578)
                      +..+.+.+|+       ||||.|++.+                       ..++++.|++ +|+++|.+|..|+||||+|
T Consensus       388 ~~~~~~~~G~-------TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~-~GAdIN~kd~~G~TpLh~A  459 (661)
T PHA02917        388 DAVNHLDDGE-------IPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLP-YLKDINMIDKRGETLLHKA  459 (661)
T ss_pred             CccccCCCCC-------ChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHH-CCCCCCCCCCCCcCHHHHH
Confidence            2233333444       4999987533                       3567899998 9999999999999999999


Q ss_pred             HHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHh
Q 048145          305 IMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVAD  344 (578)
Q Consensus       305 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~  344 (578)
                      +..++.+++++|+     +.|+++|.+|..|+||||+|+.
T Consensus       460 a~~~~~~~v~~Ll-----~~GAdin~~d~~G~T~L~~A~~  494 (661)
T PHA02917        460 VRYNKQSLVSLLL-----ESGSDVNIRSNNGYTCIAIAIN  494 (661)
T ss_pred             HHcCCHHHHHHHH-----HCcCCCCCCCCCCCCHHHHHHH
Confidence            9999999999999     6788899999999999999996

>PHA02917 ankyrin-like protein; Provisional

Probab=99.97  E-value=3.2e-30  Score=278.43  Aligned_cols=319  Identities=14%  Similarity=0.061  Sum_probs=199.2

Q ss_pred             hHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhc---CChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCH-
Q 048145            7 RQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAM---EDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNV-   82 (578)
Q Consensus         7 ~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~---g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~-   82 (578)
                      ++.+++++.+   ....+.+|.+|+||||+|+..   |+.++|+.|++. |++     ++.+|..|+||||+|+..|+. 
T Consensus        12 ~~~~~~l~~~---~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~-ga~-----v~~~~~~g~TpL~~Aa~~g~~~   82 (661)
T PHA02917         12 LDELKQMLRD---RDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDS-GTN-----PLHKNWRQLTPLEEYTNSRHVK   82 (661)
T ss_pred             HHHHHHHHhc---cCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHC-CCC-----ccccCCCCCCHHHHHHHcCChh
Confidence            4567777765   344577899999999997555   889999999998 999     999999999999999887663 


Q ss_pred             ----------------------------------HHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHH--HHcCcHHHH
Q 048145           83 ----------------------------------DVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRA--ASVGKIEAL  126 (578)
Q Consensus        83 ----------------------------------~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A--~~~g~~~iv  126 (578)
                                                        |+|++|+++|+        +++.+|..|.||||.|  +.+|+.+++
T Consensus        83 v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Ga--------din~~d~~g~T~L~~~~a~~~~~~eiv  154 (661)
T PHA02917         83 VNKDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGF--------DLSVKCENHRSVIENYVMTDDPVPEII  154 (661)
T ss_pred             HHHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCC--------CCCccCCCCccHHHHHHHccCCCHHHH
Confidence                                              33444444444        6777777788888754  346778888


Q ss_pred             HHHHHh---c--cc---cCC-----------ccHHHHHHHHHHHHH---hccCchHHHHHHHhhhhhHHHHHHHHHHHhc
Q 048145          127 RYFAEQ---V--NQ---TAA-----------ISILSSKMYIAIWRQ---VIQGCPAIKKIWEKKQIHKKAVALVKMLVEK  184 (578)
Q Consensus       127 ~~Ll~~---~--~~---~~g-----------~t~Lh~A~~~~~~~~---~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~  184 (578)
                      ++|+++   .  .|   ..|           .||||+|+..+....   ...|+                .+++++|+++
T Consensus       155 klLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~----------------~eiv~~Li~~  218 (661)
T PHA02917        155 DLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVR----------------PEVVKCLINH  218 (661)
T ss_pred             HHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCc----------------HHHHHHHHHC
Confidence            888877   1  11   223           478887763110000   00122                6788888888


Q ss_pred             cccccccccCCCCCCchhhcccCCCCccc--cc-------------------c-------------c---cchhhHHHHH
Q 048145          185 RIDDCATHEKPTPGVTEISLGLGKGNIEK--KV-------------------V-------------D---VSAGEWVELM  227 (578)
Q Consensus       185 g~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~-------------------~-------------~---~~~~~~~~~l  227 (578)
                      |++++..   +..|.||+|+|+..++.+.  ..                   .             .   ....++++.|
T Consensus       219 Gadvn~~---d~~G~TpLh~A~~~g~~~~eivk~Li~g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~L  295 (661)
T PHA02917        219 GIKPSSI---DKNYCTALQYYIKSSHIDIDIVKLLMKGIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLF  295 (661)
T ss_pred             CCCcccC---CCCCCcHHHHHHHcCCCcHHHHHHHHhCCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHH
Confidence            8887665   2357788888876655320  00                   0             0   0023344444


Q ss_pred             HHHhcCCc-ccc--------------cccc---------------C------------cccccccccccccccccccchh
Q 048145          228 IQVKKGCT-NKA--------------HVDQ---------------Y------------PQAVDQENDTTKDMTSSMRTMR  265 (578)
Q Consensus       228 ~~~~~~~~-~~~--------------l~~~---------------~------------~~~~~~~~~~~~g~t~~~~g~~  265 (578)
                      +..+.... ..+              +...               .            ..+++++.       ++.+|++
T Consensus       296 i~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~-------~~~~g~~  368 (661)
T PHA02917        296 LENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMTFGDIDIPLVECMLEYGAVVNK-------EAIHGYF  368 (661)
T ss_pred             HhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCC-------CCccccc
Confidence            44332110 000              0000               0            01111121       1223333


Q ss_pred             HHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCc-----------------------HHHHHHHHHhhch
Q 048145          266 ILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQ-----------------------LEIFEIIKEKMQL  322 (578)
Q Consensus       266 pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~-----------------------~~iv~~Ll~~~~~  322 (578)
                      +.    ...+.+++++||...|++++..+.+|+||||.|++.++                       .+++++|+     
T Consensus       369 ~~----~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll-----  439 (661)
T PHA02917        369 RN----INIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICL-----  439 (661)
T ss_pred             hh----hcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHH-----
Confidence            32    24455666666665566666667789999999986432                       46778888     


Q ss_pred             hhhhhhhcccCCCCchhhHHHhcccccCCCCCChHHhHHHHHHHHHHHHhhCCCccccccccCCCCChhhhhhh
Q 048145          323 SLAEWALKIDNEGYTILHQVADMKYYKQGTQAGPVLQFQDELEWFERVKDIAPPHYAMHRDKNKRMTANDLFDL  396 (578)
Q Consensus       323 ~~~~~~~~~d~~G~T~LhlA~~~~~~~~~~~~~~~l~l~~~l~~~~~v~~~~~~~~~~~~n~~~g~t~~~l~~~  396 (578)
                      +.|+++|.+|..|+||||+|+..++.                   +.++.++..+......+..|.||..+...
T Consensus       440 ~~GAdIN~kd~~G~TpLh~Aa~~~~~-------------------~~v~~Ll~~GAdin~~d~~G~T~L~~A~~  494 (661)
T PHA02917        440 PYLKDINMIDKRGETLLHKAVRYNKQ-------------------SLVSLLLESGSDVNIRSNNGYTCIAIAIN  494 (661)
T ss_pred             HCCCCCCCCCCCCcCHHHHHHHcCCH-------------------HHHHHHHHCcCCCCCCCCCCCCHHHHHHH
Confidence            67788999999999999999987743                   33445555555444444599999998764

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=7.1e-30  Score=257.30  Aligned_cols=205  Identities=21%  Similarity=0.235  Sum_probs=180.9

Q ss_pred             CCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCC-C
Q 048145           30 GECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVEN-K  108 (578)
Q Consensus        30 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n-~  108 (578)
                      -.+-++.|++.|+.+-|+.|++..+.+     ++..|.+|.|+||+||.+++++++++|+++|+        ++|... .
T Consensus        44 ~~~~~v~A~q~G~l~~v~~lve~~g~~-----v~~~D~~g~tlLHWAAiNNrl~v~r~li~~ga--------dvn~~gG~  110 (600)
T KOG0509|consen   44 SLDDIVKATQYGELETVKELVESEGES-----VNNPDREGVTLLHWAAINNRLDVARYLISHGA--------DVNAIGGV  110 (600)
T ss_pred             hhhhhhhHhhcchHHHHHHHHhhcCcC-----CCCCCcCCccceeHHHHcCcHHHHHHHHHcCC--------CccccCCC
Confidence            356788999999999999999986777     89999999999999999999999999999999        888777 7


Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHh
Q 048145          109 LGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVE  183 (578)
Q Consensus       109 ~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~  183 (578)
                      -+.||||+|+++|+..+|+.|+++     ..|.+|.+|||.|+        ..|+                .-++-+|+.
T Consensus       111 l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~--------~~~~----------------~~~vayll~  166 (600)
T KOG0509|consen  111 LGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAA--------QFGH----------------TALVAYLLS  166 (600)
T ss_pred             CCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHH--------HhCc----------------hHHHHHHHH
Confidence            789999999999999999999998     78999999999999        6777                778888888


Q ss_pred             ccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccc
Q 048145          184 KRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRT  263 (578)
Q Consensus       184 ~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g  263 (578)
                      +|++++..                                                             |++|+|     
T Consensus       167 ~~~d~d~~-------------------------------------------------------------D~~grT-----  180 (600)
T KOG0509|consen  167 KGADIDLR-------------------------------------------------------------DNNGRT-----  180 (600)
T ss_pred             hcccCCCc-------------------------------------------------------------CCCCCC-----
Confidence            87655433                                                             446666     


Q ss_pred             hhHHHHHHhcCHHHHHHHHHHHCCCcccccc-cCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHH
Q 048145          264 MRILLFAVSNGIIEILEEIRHKYPQTLDNVN-EKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQV  342 (578)
Q Consensus       264 ~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d-~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA  342 (578)
                        |||+||.+|+...++.||+ .++.++.+| .+|.||||.|+..|+.+++++|+     +-|++.+.+|.+|.||+.+|
T Consensus       181 --pLmwAaykg~~~~v~~LL~-f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~-----~g~~~~d~~~~~g~tp~~LA  252 (600)
T KOG0509|consen  181 --PLMWAAYKGFALFVRRLLK-FGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLL-----EGGADLDKTNTNGKTPFDLA  252 (600)
T ss_pred             --HHHHHHHhcccHHHHHHHH-hcccccccccccCCchHHHHHhcCCcceEehhh-----hcCCcccccccCCCCHHHHH
Confidence              9999999999998999998 889999988 89999999999999999999555     45667899999999999999


Q ss_pred             Hhc
Q 048145          343 ADM  345 (578)
Q Consensus       343 ~~~  345 (578)
                      .+.
T Consensus       253 ~~~  255 (600)
T KOG0509|consen  253 QER  255 (600)
T ss_pred             HHh
Confidence            876

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.96  E-value=5.9e-29  Score=264.95  Aligned_cols=243  Identities=13%  Similarity=0.151  Sum_probs=188.7

Q ss_pred             ChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcC------ChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHc
Q 048145            6 DRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAME------DPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATI   79 (578)
Q Consensus         6 ~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g------~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~   79 (578)
                      +.+ +.++|.+ + +...+..+ .+.||||.|+..+      +.++|+.|+++ |++     ++.+|.+|.||||.|+..
T Consensus        49 ~~~-iv~~Ll~-~-GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~-Gad-----in~~d~~g~tpL~~a~~~  118 (494)
T PHA02989         49 KIK-IVKLLID-N-GADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKF-GAD-----INLKTFNGVSPIVCFIYN  118 (494)
T ss_pred             ChH-HHHHHHH-c-CCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHC-CCC-----CCCCCCCCCcHHHHHHHh
Confidence            556 4555555 2 33444444 5799999998764      46899999999 999     999999999999998865


Q ss_pred             ---CCHHHHHHHHhhcCCCCCCCCCCc-ccCCCCCCCHHHHHHHc--CcHHHHHHHHHh-----c-cccCCccHHHHHHH
Q 048145           80 ---NNVDVAKTLVEFSKQSNDADKNPL-VVENKLGETPLYRAASV--GKIEALRYFAEQ-----V-NQTAAISILSSKMY  147 (578)
Q Consensus        80 ---g~~~iv~~Ll~~g~~~~~~~~~~~-~~~n~~g~TpLh~A~~~--g~~~iv~~Ll~~-----~-~~~~g~t~Lh~A~~  147 (578)
                         |+.+++++|+++|+        ++ +.+|..|.||||+|+..  ++.+++++|++.     . .+..|.||||+|+.
T Consensus       119 ~~~~~~eiv~~Ll~~Ga--------din~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~  190 (494)
T PHA02989        119 SNINNCDMLRFLLSKGI--------NVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLR  190 (494)
T ss_pred             cccCcHHHHHHHHHCCC--------CcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHh
Confidence               68999999999999        88 78999999999998764  689999999998     2 46789999999973


Q ss_pred             HHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHH
Q 048145          148 IAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELM  227 (578)
Q Consensus       148 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  227 (578)
                      ...    ..|+                .+++++|+++|++++..+.   .+.+++|.+.....    .......+.++.+
T Consensus       191 ~~~----~~~~----------------~~iv~~Ll~~Ga~vn~~~~---~~~t~l~~~~~~~~----~~~~~~~~il~~l  243 (494)
T PHA02989        191 NDI----DVIS----------------IKVIKYLIKKGVNIETNNN---GSESVLESFLDNNK----ILSKKEFKVLNFI  243 (494)
T ss_pred             ccc----cccc----------------HHHHHHHHhCCCCccccCC---ccccHHHHHHHhch----hhcccchHHHHHH
Confidence            210    1234                8999999999999877643   46677766543221    0111122233322


Q ss_pred             HHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHh
Q 048145          228 IQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMY  307 (578)
Q Consensus       228 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~  307 (578)
                      .                ...+++.+|..|.|       |||+|+..|+.+++++|++ .|++++.+|..|+||||+|+++
T Consensus       244 ~----------------~~advn~~d~~G~T-------pL~~Aa~~~~~~~v~~LL~-~Gadin~~d~~G~TpL~~A~~~  299 (494)
T PHA02989        244 L----------------KYIKINKKDKKGFN-------PLLISAKVDNYEAFNYLLK-LGDDIYNVSKDGDTVLTYAIKH  299 (494)
T ss_pred             H----------------hCCCCCCCCCCCCC-------HHHHHHHhcCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHc
Confidence            1                12345555666666       9999999999999999998 8999999999999999999999


Q ss_pred             CcHHHHHHHH
Q 048145          308 RQLEIFEIIK  317 (578)
Q Consensus       308 g~~~iv~~Ll  317 (578)
                      |+.++++.|+
T Consensus       300 ~~~~iv~~LL  309 (494)
T PHA02989        300 GNIDMLNRIL  309 (494)
T ss_pred             CCHHHHHHHH
Confidence            9999999999

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.96  E-value=1.5e-29  Score=275.58  Aligned_cols=310  Identities=19%  Similarity=0.230  Sum_probs=230.2

Q ss_pred             cccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCC
Q 048145            2 ALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINN   81 (578)
Q Consensus         2 a~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~   81 (578)
                      |..+.++ +.+++.+  .+......|..|-||||.|+..|+.+++.+++.+ ++.     ++..+..|.||||.||+.+.
T Consensus       217 ~~~nri~-~~eLll~--~gadv~a~d~~gl~~lh~a~~~g~~~i~~~l~~~-ga~-----~~~~~vr~~tplh~AA~~~~  287 (1143)
T KOG4177|consen  217 CKKNRIK-VVELLLK--HGADVSAKDESGLTPLHVAAFMGHLDIVKLLLQH-GAS-----VNVSTVRGETPLHMAARAGQ  287 (1143)
T ss_pred             ccccccc-eeeeeee--ccCcCCcccccCccHHHHHHhccchhHHHHHHhc-ccc-----cCcccccccCcchhhhccch
Confidence            3334444 4445555  3556688899999999999999999999999999 888     99999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHH----
Q 048145           82 VDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWR----  152 (578)
Q Consensus        82 ~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~----  152 (578)
                      .|++++|++.|+        ++..++..+.||+|.|.+.|+.++++.+++.     ..+..|.+|+|+++......    
T Consensus       288 ~e~~~~ll~~ga--------~~~~~~~~~kt~l~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~  359 (1143)
T KOG4177|consen  288 VEVCKLLLQNGA--------DVLAKARDDQTPLHIASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGA  359 (1143)
T ss_pred             hhhHhhhhccCc--------ccccccccccChhhhhcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHH
Confidence            999999999999        8889999999999999999999999999987     56788999999988543210    


Q ss_pred             ----------HhccCc-hHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccch-
Q 048145          153 ----------QVIQGC-PAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSA-  220 (578)
Q Consensus       153 ----------~~~~G~-~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-  220 (578)
                                ...+|. |+..+...++      .+++++++++|.+++..   ...|.|++|.++...+.....+.... 
T Consensus       360 l~~~~~~~~~a~~k~~~pl~la~~~g~------~~~v~Lll~~ga~~~~~---gk~gvTplh~aa~~~~~~~v~l~l~~g  430 (1143)
T KOG4177|consen  360 LLEHGAQRRQAEEKGFTPLHLAVKSGR------VSVVELLLEAGADPNSA---GKNGVTPLHVAAHYGNPRVVKLLLKRG  430 (1143)
T ss_pred             hhccccccCcccccCCcchhhhcccCc------hhHHHhhhhccCCcccC---CCCCcceeeehhhccCcceEEEEeccC
Confidence                      112222 4444444444      79999999999985544   44678888888877766544321111 


Q ss_pred             -----------------------hhHHHHHH-------------------HHhcCCcc--ccccccC-------------
Q 048145          221 -----------------------GEWVELMI-------------------QVKKGCTN--KAHVDQY-------------  243 (578)
Q Consensus       221 -----------------------~~~~~~l~-------------------~~~~~~~~--~~l~~~~-------------  243 (578)
                                             .+....+.                   ....+...  ..+.+..             
T Consensus       431 A~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~  510 (1143)
T KOG4177|consen  431 ASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTP  510 (1143)
T ss_pred             CChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccch
Confidence                                   11111110                   00000000  0000000             


Q ss_pred             -----------------cccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHH
Q 048145          244 -----------------PQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIM  306 (578)
Q Consensus       244 -----------------~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~  306 (578)
                                       .++++++.       ++.+|+||||.|+..|++++|++||+ .|++++.+|+.|+||||.|+.
T Consensus       511 lhla~~~~~v~~~~~l~~~ga~v~~-------~~~r~~TpLh~A~~~g~v~~VkfLLe-~gAdv~ak~~~G~TPLH~Aa~  582 (1143)
T KOG4177|consen  511 LHLAADEDTVKVAKILLEHGANVDL-------RTGRGYTPLHVAVHYGNVDLVKFLLE-HGADVNAKDKLGYTPLHQAAQ  582 (1143)
T ss_pred             hhhhhhhhhHHHHHHHhhcCCceeh-------hcccccchHHHHHhcCCchHHHHhhh-CCccccccCCCCCChhhHHHH
Confidence                             00111111       25567779999999999999999998 999999999999999999999


Q ss_pred             hCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcccccC
Q 048145          307 YRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYYKQ  350 (578)
Q Consensus       307 ~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~~~  350 (578)
                      .|+.+|+++|+     ..|+++|..|.+|.||||+|+..|+.+.
T Consensus       583 ~G~~~i~~LLl-----k~GA~vna~d~~g~TpL~iA~~lg~~~~  621 (1143)
T KOG4177|consen  583 QGHNDIAELLL-----KHGASVNAADLDGFTPLHIAVRLGYLSV  621 (1143)
T ss_pred             cChHHHHHHHH-----HcCCCCCcccccCcchhHHHHHhcccch
Confidence            99999999999     5677799999999999999999998743

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=2.2e-29  Score=253.75  Aligned_cols=199  Identities=18%  Similarity=0.210  Sum_probs=177.6

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccC-CCCChHHHHHHHc
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTD-DNGNTAVHALATI   79 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d-~~G~TpLh~Aa~~   79 (578)
                      |+..|+++.++++++. . ....+..|.+|-|+||+||.+++.+++++|+++ +++     +|... .-|-||||+||++
T Consensus        51 A~q~G~l~~v~~lve~-~-g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~-gad-----vn~~gG~l~stPLHWAar~  122 (600)
T KOG0509|consen   51 ATQYGELETVKELVES-E-GESVNNPDREGVTLLHWAAINNRLDVARYLISH-GAD-----VNAIGGVLGSTPLHWAARN  122 (600)
T ss_pred             HhhcchHHHHHHHHhh-c-CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHc-CCC-----ccccCCCCCCCcchHHHHc
Confidence            6789999999999998 3 666778888999999999999999999999999 999     99988 6788999999999


Q ss_pred             CCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHh
Q 048145           80 NNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQV  154 (578)
Q Consensus        80 g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~  154 (578)
                      |++.+|++|+++|+        +++.+|.+|.||||+|++.||...|-+|+..     .+|.+|+||||+|+        
T Consensus       123 G~~~vv~lLlqhGA--------dpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAa--------  186 (600)
T KOG0509|consen  123 GHISVVDLLLQHGA--------DPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAA--------  186 (600)
T ss_pred             CcHHHHHHHHHcCC--------CCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHH--------
Confidence            99999999999999        9999999999999999999999999999988     78999999999999        


Q ss_pred             ccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCC
Q 048145          155 IQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGC  234 (578)
Q Consensus       155 ~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  234 (578)
                      .+|+                -..+..|++-|+++...+                                          
T Consensus       187 ykg~----------------~~~v~~LL~f~a~~~~~d------------------------------------------  208 (600)
T KOG0509|consen  187 YKGF----------------ALFVRRLLKFGASLLLTD------------------------------------------  208 (600)
T ss_pred             Hhcc----------------cHHHHHHHHhcccccccc------------------------------------------
Confidence            5565                333888888877654431                                          


Q ss_pred             ccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHh
Q 048145          235 TNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMY  307 (578)
Q Consensus       235 ~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~  307 (578)
                                        |++|+|       |||+|+..|+..+++ |+.+.+++.+.+|.+|+||+.+|.+.
T Consensus       209 ------------------~~~g~T-------pLHwa~~~gN~~~v~-Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  209 ------------------DNHGNT-------PLHWAVVGGNLTAVK-LLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             ------------------cccCCc-------hHHHHHhcCCcceEe-hhhhcCCcccccccCCCCHHHHHHHh
Confidence                              235666       999999999999999 55559999999999999999999887

>PHA02798 ankyrin-like protein; Provisional

Probab=99.96  E-value=3.2e-28  Score=258.93  Aligned_cols=262  Identities=11%  Similarity=0.051  Sum_probs=198.4

Q ss_pred             ChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHH--HcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHH
Q 048145           42 DPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALA--TINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAAS  119 (578)
Q Consensus        42 ~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa--~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~  119 (578)
                      ..+.|+.|++. + +     ++.. .+|.|+++.+.  ..++.++|++|+++|+        +++.++..|.||||.|+.
T Consensus        17 ~~~~v~~ll~~-~-~-----~~~~-~~~~~~~~~yl~~~~~~~~iv~~Ll~~Ga--------dvn~~d~~g~TpL~~~~~   80 (489)
T PHA02798         17 KLSTVKLLIKS-C-N-----PNEI-VNEYSIFQKYLQRDSPSTDIVKLFINLGA--------NVNGLDNEYSTPLCTILS   80 (489)
T ss_pred             cHHHHHHHHhc-C-C-----hhhh-cccchHHHHHHhCCCCCHHHHHHHHHCCC--------CCCCCCCCCCChHHHHHH
Confidence            36799999976 3 2     3333 45778877444  3458999999999999        999999999999999987


Q ss_pred             c-----CcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhcccccc
Q 048145          120 V-----GKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDC  189 (578)
Q Consensus       120 ~-----g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~  189 (578)
                      +     ++.+++++|+++     ..|.+|.||||+|+        ..|..             ...+++++|+++|++++
T Consensus        81 n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~--------~~~~~-------------~~~~iv~~Ll~~Gadvn  139 (489)
T PHA02798         81 NIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLL--------SNGYI-------------NNLEILLFMIENGADTT  139 (489)
T ss_pred             hHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHH--------HcCCc-------------ChHHHHHHHHHcCCCcc
Confidence            5     789999999998     67889999999999        44420             01799999999999987


Q ss_pred             ccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccc-cccccccccchhHHH
Q 048145          190 ATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDT-TKDMTSSMRTMRILL  268 (578)
Q Consensus       190 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~-~~g~t~~~~g~~pLh  268 (578)
                      ..   +..|.||+|+++..++.       ...+.++.++..+               .+++..+ ..+.|       |||
T Consensus       140 ~~---d~~g~tpL~~a~~~~~~-------~~~~vv~~Ll~~g---------------adin~~~~~~~~t-------~Lh  187 (489)
T PHA02798        140 LL---DKDGFTMLQVYLQSNHH-------IDIEIIKLLLEKG---------------VDINTHNNKEKYD-------TLH  187 (489)
T ss_pred             cc---CCCCCcHHHHHHHcCCc-------chHHHHHHHHHhC---------------CCcccccCcCCCc-------HHH
Confidence            66   34688999998654321       1256666665432               2222221 23444       999


Q ss_pred             HHHhc----CHHHHHHHHHHHCCCcccccccCCChHHH-------HHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCc
Q 048145          269 FAVSN----GIIEILEEIRHKYPQTLDNVNEKGQNILH-------VAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYT  337 (578)
Q Consensus       269 ~Aa~~----G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh-------~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T  337 (578)
                      .++..    ++.+++++|++ .|++++..|..|+++++       .+...++.+++++|+      .++++|.+|..|+|
T Consensus       188 ~~~~~~~~~~~~~ivk~Li~-~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~------~~~dvN~~d~~G~T  260 (489)
T PHA02798        188 CYFKYNIDRIDADILKLFVD-NGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIF------SYIDINQVDELGFN  260 (489)
T ss_pred             HHHHhccccCCHHHHHHHHH-CCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHH------hcCCCCCcCcCCcc
Confidence            98764    58999999998 89999999999999877       245567788998887      35789999999999


Q ss_pred             hhhHHHhcccccCCCCCChHHhHHHHHHHHHHHHhhCCCccccccccCCCCChhhhhhhhh
Q 048145          338 ILHQVADMKYYKQGTQAGPVLQFQDELEWFERVKDIAPPHYAMHRDKNKRMTANDLFDLTH  398 (578)
Q Consensus       338 ~LhlA~~~~~~~~~~~~~~~l~l~~~l~~~~~v~~~~~~~~~~~~n~~~g~t~~~l~~~~~  398 (578)
                      |||+|+..++.                   +.++.++..+......+.+|+||..++.+..
T Consensus       261 PL~~A~~~~~~-------------------~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~  302 (489)
T PHA02798        261 PLYYSVSHNNR-------------------KIFEYLLQLGGDINIITELGNTCLFTAFENE  302 (489)
T ss_pred             HHHHHHHcCcH-------------------HHHHHHHHcCCcccccCCCCCcHHHHHHHcC
Confidence            99999998864                   4456666666655555559999999876543

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=6.6e-28  Score=225.92  Aligned_cols=180  Identities=16%  Similarity=0.166  Sum_probs=150.5

Q ss_pred             CCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC--CHHHHHHHHhhcCCCCCCCCCCcc
Q 048145           27 TFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN--NVDVAKTLVEFSKQSNDADKNPLV  104 (578)
Q Consensus        27 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g--~~~iv~~Ll~~g~~~~~~~~~~~~  104 (578)
                      ...+.||||.|+..|+.++|+.|++.         ++.+|..|.||||+|+..+  +.+++++|+++|+        +++
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~---------~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~ga--------dvn   80 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF---------VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGA--------DVN   80 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh---------hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCC--------CCC
Confidence            34678999999999999999999976         6678899999999999754  8999999999999        888


Q ss_pred             cCC-CCCCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHh
Q 048145          105 VEN-KLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVE  183 (578)
Q Consensus       105 ~~n-~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~  183 (578)
                      .++ ..|.||||+|+..++                                 .|.                .+++++|++
T Consensus        81 ~~~~~~g~TpLh~a~~~~~---------------------------------~~~----------------~eiv~~Ll~  111 (209)
T PHA02859         81 FKTRDNNLSALHHYLSFNK---------------------------------NVE----------------PEILKILID  111 (209)
T ss_pred             ccCCCCCCCHHHHHHHhCc---------------------------------ccc----------------HHHHHHHHH
Confidence            886 479999999876421                                 112                577888888


Q ss_pred             ccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccc
Q 048145          184 KRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRT  263 (578)
Q Consensus       184 ~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g  263 (578)
                      +|++++..                                                             |..|.|     
T Consensus       112 ~gadin~~-------------------------------------------------------------d~~G~T-----  125 (209)
T PHA02859        112 SGSSITEE-------------------------------------------------------------DEDGKN-----  125 (209)
T ss_pred             CCCCCCCc-------------------------------------------------------------CCCCCC-----
Confidence            88776543                                                             235566     


Q ss_pred             hhHHHHHHh--cCHHHHHHHHHHHCCCcccccccCCChHHHH-HHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhh
Q 048145          264 MRILLFAVS--NGIIEILEEIRHKYPQTLDNVNEKGQNILHV-AIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILH  340 (578)
Q Consensus       264 ~~pLh~Aa~--~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~-A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~Lh  340 (578)
                        |||.|+.  .++.+++++|++ .+++++.+|.+|.||||. |+..++.+++++|+     +.|++++.+|..|+||||
T Consensus       126 --pLh~a~~~~~~~~~iv~~Li~-~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll-----~~Gadi~~~d~~g~tpl~  197 (209)
T PHA02859        126 --LLHMYMCNFNVRINVIKLLID-SGVSFLNKDFDNNNILYSYILFHSDKKIFDFLT-----SLGIDINETNKSGYNCYD  197 (209)
T ss_pred             --HHHHHHHhccCCHHHHHHHHH-cCCCcccccCCCCcHHHHHHHhcCCHHHHHHHH-----HcCCCCCCCCCCCCCHHH
Confidence              9999876  578999999998 899999999999999996 56678999999999     567789999999999999


Q ss_pred             HHHhcc
Q 048145          341 QVADMK  346 (578)
Q Consensus       341 lA~~~~  346 (578)
                      +|...+
T Consensus       198 la~~~~  203 (209)
T PHA02859        198 LIKFRN  203 (209)
T ss_pred             HHhhhh
Confidence            998765

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.96  E-value=5.4e-29  Score=271.24  Aligned_cols=303  Identities=19%  Similarity=0.251  Sum_probs=211.6

Q ss_pred             hHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHH
Q 048145            7 RQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAK   86 (578)
Q Consensus         7 ~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~   86 (578)
                      ...+.+++..  .....+..+.+|.||||.||..+.+++++.++.+ |++     +..+|..|-||||.|+..|+.++++
T Consensus       188 ~~~~~~ll~~--~~~~~~a~~~~~~tpl~~a~~~nri~~~eLll~~-gad-----v~a~d~~gl~~lh~a~~~g~~~i~~  259 (1143)
T KOG4177|consen  188 HARVAKLLLD--KKADPNASALNGFTPLHIACKKNRIKVVELLLKH-GAD-----VSAKDESGLTPLHVAAFMGHLDIVK  259 (1143)
T ss_pred             hHHHHhhhhc--ccCCccccccCCCCchhhhccccccceeeeeeec-cCc-----CCcccccCccHHHHHHhccchhHHH
Confidence            3445566555  3455677788999999999999999999999999 999     9999999999999999999999999


Q ss_pred             HHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHH---------
Q 048145           87 TLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWR---------  152 (578)
Q Consensus        87 ~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~---------  152 (578)
                      +|+.+|+        .++..+..|+||+|.|++.+..+++++|++.     ..+....||+|.|.......         
T Consensus       260 ~l~~~ga--------~~~~~~vr~~tplh~AA~~~~~e~~~~ll~~ga~~~~~~~~~kt~l~~a~~~g~~~i~~~~l~~~  331 (1143)
T KOG4177|consen  260 LLLQHGA--------SVNVSTVRGETPLHMAARAGQVEVCKLLLQNGADVLAKARDDQTPLHIASRLGHEEIVHLLLQAG  331 (1143)
T ss_pred             HHHhccc--------ccCcccccccCcchhhhccchhhhHhhhhccCcccccccccccChhhhhcccchHHHHHHHhhcc
Confidence            9999999        8999999999999999999999999999998     56788999999998322100         


Q ss_pred             -----HhccCc-hHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHH
Q 048145          153 -----QVIQGC-PAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVEL  226 (578)
Q Consensus       153 -----~~~~G~-~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  226 (578)
                           ....|. |++.+.+.+.      .++..++.+.+..-...   ...+.+++|.++..++          .+.+++
T Consensus       332 ~~~~aar~~g~t~lHlaa~~~~------~~~~~~l~~~~~~~~~a---~~k~~~pl~la~~~g~----------~~~v~L  392 (1143)
T KOG4177|consen  332 ATPNAARTAGYTPLHLAAKEGQ------VEVAGALLEHGAQRRQA---EEKGFTPLHLAVKSGR----------VSVVEL  392 (1143)
T ss_pred             CCccccCcCCcccccHhhhhhh------HHHHHHhhccccccCcc---cccCCcchhhhcccCc----------hhHHHh
Confidence                 001111 3333333332      23444444444432222   1134455555544443          333333


Q ss_pred             HHHHhcC-------Ccc-----------ccccccCccccccccccccccc---------------------------ccc
Q 048145          227 MIQVKKG-------CTN-----------KAHVDQYPQAVDQENDTTKDMT---------------------------SSM  261 (578)
Q Consensus       227 l~~~~~~-------~~~-----------~~l~~~~~~~~~~~~~~~~g~t---------------------------~~~  261 (578)
                      +......       .+.           .+.........+.+..+..|+|                           ..+
T Consensus       393 ll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~  472 (1143)
T KOG4177|consen  393 LLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSK  472 (1143)
T ss_pred             hhhccCCcccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhcc
Confidence            3211111       000           0000001111112222222222                           245


Q ss_pred             cchhHHHHHHhcCHHHHHHHHHHH--------------------------------CCCcccccccCCChHHHHHHHhCc
Q 048145          262 RTMRILLFAVSNGIIEILEEIRHK--------------------------------YPQTLDNVNEKGQNILHVAIMYRQ  309 (578)
Q Consensus       262 ~g~~pLh~Aa~~G~~~iv~~Ll~~--------------------------------~~~~i~~~d~~G~t~Lh~A~~~g~  309 (578)
                      .|.||||+|+..|+.++++.|++.                                .+++++.++..|.||||+|+.+|+
T Consensus       473 ~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~  552 (1143)
T KOG4177|consen  473 QGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGN  552 (1143)
T ss_pred             ccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCC
Confidence            566688888877777777777663                                356777888899999999999999


Q ss_pred             HHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhccccc
Q 048145          310 LEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYYK  349 (578)
Q Consensus       310 ~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~~  349 (578)
                      .++|++|+     +.|++++.+|+.|+||||.|+..|+.+
T Consensus       553 v~~VkfLL-----e~gAdv~ak~~~G~TPLH~Aa~~G~~~  587 (1143)
T KOG4177|consen  553 VDLVKFLL-----EHGADVNAKDKLGYTPLHQAAQQGHND  587 (1143)
T ss_pred             chHHHHhh-----hCCccccccCCCCCChhhHHHHcChHH
Confidence            99999999     678889999999999999999999753

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.95  E-value=7e-28  Score=232.67  Aligned_cols=129  Identities=14%  Similarity=0.156  Sum_probs=120.3

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN   80 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g   80 (578)
                      |+..|+++.|+.++..   ....|..+....|||--||..|+.++|++|+++ ++|     +++.|..|.|.||+||..|
T Consensus        91 AsaAGHl~vVk~L~~~---ga~VN~tT~TNStPLraACfDG~leivKyLvE~-gad-----~~IanrhGhTcLmIa~ykG  161 (615)
T KOG0508|consen   91 ASAAGHLEVVKLLLRR---GASVNDTTRTNSTPLRAACFDGHLEIVKYLVEH-GAD-----PEIANRHGHTCLMIACYKG  161 (615)
T ss_pred             HhccCcHHHHHHHHHh---cCccccccccCCccHHHHHhcchhHHHHHHHHc-CCC-----CcccccCCCeeEEeeeccC
Confidence            5678999977777766   366778888889999999999999999999999 999     9999999999999999999


Q ss_pred             CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh----ccccCCccHHHHHH
Q 048145           81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ----VNQTAAISILSSKM  146 (578)
Q Consensus        81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~----~~~~~g~t~Lh~A~  146 (578)
                      |.+|+++|++.|+        ++|.++..|+|+||.|+..|+.|++++|+.+    ..|..|.|||..|.
T Consensus       162 h~~I~qyLle~gA--------Dvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~d~~GmtPL~~Aa  223 (615)
T KOG0508|consen  162 HVDIAQYLLEQGA--------DVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDVDGHGMTPLLLAA  223 (615)
T ss_pred             chHHHHHHHHhCC--------CcchhcccCchHHHhhhhcccHHHHHHHHhCCceeeecCCCCchHHHHh
Confidence            9999999999999        9999999999999999999999999999998    67888999999999

>PHA02730 ankyrin-like protein; Provisional

Probab=99.95  E-value=6.5e-27  Score=246.12  Aligned_cols=289  Identities=8%  Similarity=0.065  Sum_probs=191.8

Q ss_pred             ChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcC--ChHHHHHHHcc-CCCchhhhhhhccCCCCChHHHHHHH--cC
Q 048145            6 DRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAME--DPELIKKFLGR-LPVEKRLEALMQTDDNGNTAVHALAT--IN   80 (578)
Q Consensus         6 ~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g--~~~~v~~Ll~~-~~~~~~~~~l~~~d~~G~TpLh~Aa~--~g   80 (578)
                      +.+ +.++|.+ + +...+.+|..|+||||+|+..|  +.++|+.|++. .+++     .+..+.-+++|||.++.  ++
T Consensus        56 ~~e-ivklLLs-~-GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~-----~~~~~~~~d~~l~~y~~s~n~  127 (672)
T PHA02730         56 DIK-IVRLLLS-R-GVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNAS-----NELTSNINDFDLYSYMSSDNI  127 (672)
T ss_pred             cHH-HHHHHHh-C-CCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCC-----cccccccCCchHHHHHHhcCC
Confidence            466 5555555 3 5566788999999999999977  79999999998 2334     46778889999999998  88


Q ss_pred             CHHHHHHHHhhcCCCCCCCCCCcccCC-----CCCCCHHHHHHHcC----------------------------------
Q 048145           81 NVDVAKTLVEFSKQSNDADKNPLVVEN-----KLGETPLYRAASVG----------------------------------  121 (578)
Q Consensus        81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n-----~~g~TpLh~A~~~g----------------------------------  121 (578)
                      +.|++++|++.+.       .+++..+     ..|.+|+++|+..+                                  
T Consensus       128 ~~~~vk~Li~~~~-------~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l  200 (672)
T PHA02730        128 DLRLLKYLIVDKR-------IRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSL  200 (672)
T ss_pred             cHHHHHHHHHhcC-------CChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhH
Confidence            9999999996332       1222221     13444444444444                                  


Q ss_pred             -------------cHHHHHHHHHh-----ccccCCccHHHHHHHH--------HHHHH----------------------
Q 048145          122 -------------KIEALRYFAEQ-----VNQTAAISILSSKMYI--------AIWRQ----------------------  153 (578)
Q Consensus       122 -------------~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~--------~~~~~----------------------  153 (578)
                                   +.|++++|+++     .+|.+|.||||++...        +++..                      
T Consensus       201 ~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~  280 (672)
T PHA02730        201 HYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLAD  280 (672)
T ss_pred             HHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHH
Confidence                         44555555554     3567888888852221        01100                      


Q ss_pred             --------h-------------ccCchH---HH--------------------HH-----------HHhhhh-h-HHHHH
Q 048145          154 --------V-------------IQGCPA---IK--------------------KI-----------WEKKQI-H-KKAVA  176 (578)
Q Consensus       154 --------~-------------~~G~~~---~~--------------------~~-----------~~~~~~-~-~~~~~  176 (578)
                              .             .+|.|.   +.                    ..           ....-. + ....+
T Consensus       281 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ie  360 (672)
T PHA02730        281 YLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIP  360 (672)
T ss_pred             hhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHH
Confidence                    0             001110   00                    00           000000 1 13479


Q ss_pred             HHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCccccccccccccc
Q 048145          177 LVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKD  256 (578)
Q Consensus       177 ~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g  256 (578)
                      ++++|+++|++++..    ..|.||||+++..++.      .-..++++.|+..+.             ..+++.+|..|
T Consensus       361 IvelLIs~GAdIN~k----~~G~TpLH~Aa~~nnn------~i~~eIvelLIs~Ga-------------~~dIN~kd~~G  417 (672)
T PHA02730        361 ILRCMLDNGATMDKT----TDNNYPLHDYFVNNNN------IVDVNVVRFIVENNG-------------HMAINHVSNNG  417 (672)
T ss_pred             HHHHHHHCCCCCCcC----CCCCcHHHHHHHHcCC------cchHHHHHHHHHcCC-------------CccccccccCC
Confidence            999999999999853    3688999987543210      012577777764221             12334445566


Q ss_pred             ccccccchhHHHH---HHhcC---------HHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhh
Q 048145          257 MTSSMRTMRILLF---AVSNG---------IIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSL  324 (578)
Q Consensus       257 ~t~~~~g~~pLh~---Aa~~G---------~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~  324 (578)
                      .|       |||.   |...+         ..+++++|++ +|+++|..|..|+||||+|+..++.+++++|+     +.
T Consensus       418 ~T-------~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs-~GADINakD~~G~TPLh~Aa~~~~~eive~LI-----~~  484 (672)
T PHA02730        418 RL-------CMYGLILSRFNNCGYHCYETILIDVFDILSK-YMDDIDMIDNENKTLLYYAVDVNNIQFARRLL-----EY  484 (672)
T ss_pred             Cc-------hHhHHHHHHhccccccccchhHHHHHHHHHh-cccchhccCCCCCCHHHHHHHhCCHHHHHHHH-----HC
Confidence            66       9994   33332         2367999998 99999999999999999999999999999999     67


Q ss_pred             hhhhhcccC-CCCchhhHHHhc
Q 048145          325 AEWALKIDN-EGYTILHQVADM  345 (578)
Q Consensus       325 ~~~~~~~d~-~G~T~LhlA~~~  345 (578)
                      |+++|.+|+ .|+||||+|+..
T Consensus       485 GAdIN~~d~~~g~TaL~~Aa~~  506 (672)
T PHA02730        485 GASVNTTSRSIINTAIQKSSYR  506 (672)
T ss_pred             CCCCCCCCCcCCcCHHHHHHHh
Confidence            788999997 599999999874

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.95  E-value=7.2e-28  Score=232.57  Aligned_cols=210  Identities=20%  Similarity=0.279  Sum_probs=182.5

Q ss_pred             CcccCChHHHHHHHhcCCchhhhc--cCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhc--------cCCCCC
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLG--YRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQ--------TDDNGN   70 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~--~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~--------~d~~G~   70 (578)
                      |+..|++..+..++.+.+...+.+  ....+|.|||-+||++||.++|++|+++++++     +..        .+..|-
T Consensus        11 aa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~-----~e~~GsV~FDge~Iega   85 (615)
T KOG0508|consen   11 AARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRAS-----PEQGGSVRFDGETIEGA   85 (615)
T ss_pred             HhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCC-----ccCCceEEeCCcccCCC
Confidence            577899999999888744343332  23457889999999999999999999986655     332        345688


Q ss_pred             hHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHH
Q 048145           71 TAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSK  145 (578)
Q Consensus        71 TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A  145 (578)
                      +||..|+..||.++|+.|+++|+        ++|....-..|||--||.-||.|+|++|+++     +.|..|.|.||+|
T Consensus        86 ppLWaAsaAGHl~vVk~L~~~ga--------~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa  157 (615)
T KOG0508|consen   86 PPLWAASAAGHLEVVKLLLRRGA--------SVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIA  157 (615)
T ss_pred             chhhHHhccCcHHHHHHHHHhcC--------ccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEee
Confidence            99999999999999999999999        8898888889999999999999999999998     7899999999999


Q ss_pred             HHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHH
Q 048145          146 MYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVE  225 (578)
Q Consensus       146 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  225 (578)
                      +        ..|+                .+++++|++.|+|++.+                                  
T Consensus       158 ~--------ykGh----------------~~I~qyLle~gADvn~k----------------------------------  179 (615)
T KOG0508|consen  158 C--------YKGH----------------VDIAQYLLEQGADVNAK----------------------------------  179 (615)
T ss_pred             e--------ccCc----------------hHHHHHHHHhCCCcchh----------------------------------
Confidence            9        7888                99999999999988655                                  


Q ss_pred             HHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHH
Q 048145          226 LMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAI  305 (578)
Q Consensus       226 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~  305 (578)
                                                 +.+|+|       +||.+++.|++|+++.|++ +++.++ +|..|.|||..|+
T Consensus       180 ---------------------------s~kGNT-------ALH~caEsG~vdivq~Ll~-~ga~i~-~d~~GmtPL~~Aa  223 (615)
T KOG0508|consen  180 ---------------------------SYKGNT-------ALHDCAESGSVDIVQLLLK-HGAKID-VDGHGMTPLLLAA  223 (615)
T ss_pred             ---------------------------cccCch-------HHHhhhhcccHHHHHHHHh-CCceee-ecCCCCchHHHHh
Confidence                                       236777       9999999999999999998 887665 4667999999999


Q ss_pred             HhCcHHHHHHHH
Q 048145          306 MYRQLEIFEIIK  317 (578)
Q Consensus       306 ~~g~~~iv~~Ll  317 (578)
                      ..|+.++|++|+
T Consensus       224 ~tG~~~iVe~L~  235 (615)
T KOG0508|consen  224 VTGHTDIVERLL  235 (615)
T ss_pred             hhcchHHHHHHh
Confidence            999999999999

>PHA02792 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.7e-26  Score=240.26  Aligned_cols=291  Identities=13%  Similarity=0.088  Sum_probs=201.7

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHh-cCChHHHHHHHccCCCch----------------------
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAA-MEDPELIKKFLGRLPVEK----------------------   57 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~-~g~~~~v~~Ll~~~~~~~----------------------   57 (578)
                      |+..|++|.++.|+.+   +...+..+..|+||||+|+. .|+.|+|++|+++ |++.                      
T Consensus        79 ~s~n~~lElvk~LI~~---GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~-Gad~~~~~~~g~~~~~~~~~~~~~~~  154 (631)
T PHA02792         79 CSDNIDIELLKLLISK---GLEINSIKNGINIVEKYATTSNPNVDVFKLLLDK-GIPTCSNIQYGYKIIIEQITRAEYYN  154 (631)
T ss_pred             HHhcccHHHHHHHHHc---CCCcccccCCCCcceeEeecCCCChHHHHHHHHC-CCCcccccccCcchhhhhcccccccc
Confidence            3567899866666655   55667778889999999976 6999999999999 7641                      


Q ss_pred             ---------hhhhhhccCCCCChHHHHHHHcC-------CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcC
Q 048145           58 ---------RLEALMQTDDNGNTAVHALATIN-------NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVG  121 (578)
Q Consensus        58 ---------~~~~l~~~d~~G~TpLh~Aa~~g-------~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g  121 (578)
                               ....++.+|..|.||||+|+..+       +.|++++|+++|+        +++.+|..|.||||+|+.+.
T Consensus       155 ~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~--------~~~~~d~~g~t~l~~~~~~~  226 (631)
T PHA02792        155 WDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEK--------EMRYYTYREHTTLYYYVDKC  226 (631)
T ss_pred             hhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCC--------CcCccCCCCChHHHHHHHcc
Confidence                     01245677888999999999999       8999999999999        88899999999999999999


Q ss_pred             --cHHHHHHHHHhcc-ccCCccHHHHHHHHHH-----------HHHhccCc---hHH------------HHH--------
Q 048145          122 --KIEALRYFAEQVN-QTAAISILSSKMYIAI-----------WRQVIQGC---PAI------------KKI--------  164 (578)
Q Consensus       122 --~~~iv~~Ll~~~~-~~~g~t~Lh~A~~~~~-----------~~~~~~G~---~~~------------~~~--------  164 (578)
                        ..|+++.|++... ...-...|+--...+.           ..+...|+   ..+            ..+        
T Consensus       227 ~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  306 (631)
T PHA02792        227 DIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSI  306 (631)
T ss_pred             cchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHH
Confidence              8899999988611 0111111111111100           00001111   000            000        


Q ss_pred             ---HHhhh-hhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCcccccc
Q 048145          165 ---WEKKQ-IHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHV  240 (578)
Q Consensus       165 ---~~~~~-~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~  240 (578)
                         ..... ......+++++|+++|++....    + ....++.|          +..+..+.++.|+..          
T Consensus       307 q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r~----~-~~n~~~~A----------a~~gn~eIVelLIs~----------  361 (631)
T PHA02792        307 QDLLSEYVSYHTVYINVIKCMIDEGATLYRF----K-HINKYFQK----------FDNRDPKVVEYILKN----------  361 (631)
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHCCCccccC----C-cchHHHHH----------HHcCCHHHHHHHHHc----------
Confidence               00000 0012379999999999986421    1 11223322          345566777777643          


Q ss_pred             ccCcccccccccccccccccccchhHHHHHHhcCHH---HHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHH
Q 048145          241 DQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGII---EILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIK  317 (578)
Q Consensus       241 ~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~---~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll  317 (578)
                           +++++.+|.+|.     |.||||.|+.....   ++++.|++ +|+++|.+|..|+||||+|+..++.+++++|+
T Consensus       362 -----GADIN~kD~~g~-----~~TpLh~A~~n~~~~v~~IlklLIs-~GADIN~kD~~G~TPLh~Aa~~~n~eivelLL  430 (631)
T PHA02792        362 -----GNVVVEDDDNII-----NIMPLFPTLSIHESDVLSILKLCKP-YIDDINKIDKHGRSILYYCIESHSVSLVEWLI  430 (631)
T ss_pred             -----CCchhhhcCCCC-----ChhHHHHHHHhccHhHHHHHHHHHh-cCCccccccccCcchHHHHHHcCCHHHHHHHH
Confidence                 233444443432     23499998876654   46788887 89999999999999999999999999999999


Q ss_pred             HhhchhhhhhhhcccCCCCchhhHHHh
Q 048145          318 EKMQLSLAEWALKIDNEGYTILHQVAD  344 (578)
Q Consensus       318 ~~~~~~~~~~~~~~d~~G~T~LhlA~~  344 (578)
                           +.|+++|.+|+.|+||||+|+.
T Consensus       431 -----s~GADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        431 -----DNGADINITTKYGSTCIGICVI  452 (631)
T ss_pred             -----HCCCCCCCcCCCCCCHHHHHHH
Confidence                 6678899999999999999986

>PHA02792 ankyrin-like protein; Provisional

Probab=99.93  E-value=2.8e-25  Score=231.29  Aligned_cols=320  Identities=14%  Similarity=0.111  Sum_probs=205.5

Q ss_pred             ccCCCCCCcHHHH-HHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHH-cCCHHHHHHHHhhcCCCCCCC--
Q 048145           24 GYRTFNGECAIHV-AAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALAT-INNVDVAKTLVEFSKQSNDAD--   99 (578)
Q Consensus        24 ~~~~~~g~T~Lh~-Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~-~g~~~iv~~Ll~~g~~~~~~~--   99 (578)
                      +..+.+|.+|+|+ |+..|+.|+|++|+++ |++     ++.++..|+||||+|+. .|+.|++++|+++|++.+...  
T Consensus        65 ~~~n~~~~~~~~~~~s~n~~lElvk~LI~~-GAd-----vN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~  138 (631)
T PHA02792         65 DYKNINDFDIFEYLCSDNIDIELLKLLISK-GLE-----INSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQY  138 (631)
T ss_pred             CcCccCCccHHHHHHHhcccHHHHHHHHHc-CCC-----cccccCCCCcceeEeecCCCChHHHHHHHHCCCCccccccc
Confidence            4567788889985 6667999999999999 999     99999999999999976 699999999999998632100  


Q ss_pred             --------------------C------CCcccCCCCCCCHHHHHHHcC-------cHHHHHHHHHh-----ccccCCccH
Q 048145          100 --------------------K------NPLVVENKLGETPLYRAASVG-------KIEALRYFAEQ-----VNQTAAISI  141 (578)
Q Consensus       100 --------------------~------~~~~~~n~~g~TpLh~A~~~g-------~~~iv~~Ll~~-----~~~~~g~t~  141 (578)
                                          .      -.++..+..|.||||+|+.++       +.|++++|+++     ..|..|.||
T Consensus       139 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~  218 (631)
T PHA02792        139 GYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTT  218 (631)
T ss_pred             CcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChH
Confidence                                0      135677888999999999999       89999999998     467889999


Q ss_pred             HHHHHHHH-----HH---HHhcc-Cc---hHHHHHHHhhh---hhHHHHHHHHHHHhccccccccccCCCCCCchhhccc
Q 048145          142 LSSKMYIA-----IW---RQVIQ-GC---PAIKKIWEKKQ---IHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGL  206 (578)
Q Consensus       142 Lh~A~~~~-----~~---~~~~~-G~---~~~~~~~~~~~---~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~  206 (578)
                      ||+|+.+.     +.   ..... +.   .++....+.+-   .+.....++..|++.+..-.....     .++.    
T Consensus       219 l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~-----~~~~----  289 (631)
T PHA02792        219 LYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILEL-----CNSL----  289 (631)
T ss_pred             HHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhh-----hhhh----
Confidence            99999644     11   11111 11   11211111111   112335688888876542111100     0000    


Q ss_pred             CCCCccccccccchhhHHHHHH-HHhcCC-cc----ccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHH
Q 048145          207 GKGNIEKKVVDVSAGEWVELMI-QVKKGC-TN----KAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILE  280 (578)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~l~-~~~~~~-~~----~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~  280 (578)
                       ..+.....+.......++.++ ..-..+ +.    +++.+   .+.+..         ...+..++|.||..|+.++++
T Consensus       290 -~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId---~Ga~~~---------r~~~~n~~~~Aa~~gn~eIVe  356 (631)
T PHA02792        290 -RNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMID---EGATLY---------RFKHINKYFQKFDNRDPKVVE  356 (631)
T ss_pred             -hhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHH---CCCccc---------cCCcchHHHHHHHcCCHHHHH
Confidence             000000001011112222221 111111 10    11111   011110         011334899999999999999


Q ss_pred             HHHHHCCCcccccccCC--ChHHHHHHHhCcHH---HHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcccccCCCCCC
Q 048145          281 EIRHKYPQTLDNVNEKG--QNILHVAIMYRQLE---IFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYYKQGTQAG  355 (578)
Q Consensus       281 ~Ll~~~~~~i~~~d~~G--~t~Lh~A~~~g~~~---iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~~~~~~~~  355 (578)
                      +|++ .|++++..|.+|  .||||.|+.....+   ++++|+     +.|+++|.+|+.|+||||+|+..++.       
T Consensus       357 lLIs-~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLI-----s~GADIN~kD~~G~TPLh~Aa~~~n~-------  423 (631)
T PHA02792        357 YILK-NGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCK-----PYIDDINKIDKHGRSILYYCIESHSV-------  423 (631)
T ss_pred             HHHH-cCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHH-----hcCCccccccccCcchHHHHHHcCCH-------
Confidence            9998 899999999875  69999988876654   467777     67788999999999999999988754       


Q ss_pred             hHHhHHHHHHHHHHHHhhCCCccccccccCCCCChhhhhhh
Q 048145          356 PVLQFQDELEWFERVKDIAPPHYAMHRDKNKRMTANDLFDL  396 (578)
Q Consensus       356 ~~l~l~~~l~~~~~v~~~~~~~~~~~~n~~~g~t~~~l~~~  396 (578)
                                  +.++.++..+......+..|+||..++..
T Consensus       424 ------------eivelLLs~GADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        424 ------------SLVEWLIDNGADINITTKYGSTCIGICVI  452 (631)
T ss_pred             ------------HHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence                        23444444444444444499999998654

>PHA02795 ankyrin-like protein; Provisional

Probab=99.93  E-value=4.7e-25  Score=221.77  Aligned_cols=173  Identities=12%  Similarity=0.119  Sum_probs=149.9

Q ss_pred             HHHhcCChHHHHHHHccCCCchhhhhhh------ccCCCCChHHHHHHH--cCCHHHHHHHHhhcCCCCCCCCCCcccCC
Q 048145           36 VAAAMEDPELIKKFLGRLPVEKRLEALM------QTDDNGNTAVHALAT--INNVDVAKTLVEFSKQSNDADKNPLVVEN  107 (578)
Q Consensus        36 ~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~------~~d~~G~TpLh~Aa~--~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n  107 (578)
                      +|+..+..|++++|+.+ +++     ++      .++.+++|+||+|+.  .|+.++|++|+++|+        +++.. 
T Consensus        83 ~~~~~~~k~~~~~l~s~-~~~-----~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GA--------DIn~~-  147 (437)
T PHA02795         83 LFAYITYKDIISALVSK-NYM-----EDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGA--------VIYKI-  147 (437)
T ss_pred             HHhhcchHHHHHHHHhc-ccc-----cchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCC--------CCCCC-
Confidence            99999999999999999 888     77      788999999999999  899999999999999        77764 


Q ss_pred             CCCCCHHHHHHHcCcHHHHHHHHHh-c-cc---------cCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHH
Q 048145          108 KLGETPLYRAASVGKIEALRYFAEQ-V-NQ---------TAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVA  176 (578)
Q Consensus       108 ~~g~TpLh~A~~~g~~~iv~~Ll~~-~-~~---------~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~  176 (578)
                       ++.||||.|+.+|+.+++++|+++ . .+         ..|.+++|.|.        ..++                .+
T Consensus       148 -~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~--------~~~~----------------~e  202 (437)
T PHA02795        148 -ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVD--------EPTV----------------LE  202 (437)
T ss_pred             -CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHH--------hcCH----------------HH
Confidence             458999999999999999999998 2 11         12556666666        5555                89


Q ss_pred             HHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCccccccccccccc
Q 048145          177 LVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKD  256 (578)
Q Consensus       177 ~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g  256 (578)
                      ++++|+++|++++..                                                             |..|
T Consensus       203 Ive~LIs~GADIN~k-------------------------------------------------------------D~~G  221 (437)
T PHA02795        203 IYKLCIPYIEDINQL-------------------------------------------------------------DAGG  221 (437)
T ss_pred             HHHHHHhCcCCcCcC-------------------------------------------------------------CCCC
Confidence            999999999887544                                                             2356


Q ss_pred             ccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCc--------HHHHHHHH
Q 048145          257 MTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQ--------LEIFEIIK  317 (578)
Q Consensus       257 ~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~--------~~iv~~Ll  317 (578)
                      .|       |||+|+..|+.+++++|++ .|++++.+|..|+||||+|+.+|+        .+++++|+
T Consensus       222 ~T-------pLh~Aa~~g~~eiVelLL~-~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL  282 (437)
T PHA02795        222 RT-------LLYRAIYAGYIDLVSWLLE-NGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILL  282 (437)
T ss_pred             CC-------HHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHH
Confidence            66       9999999999999999998 899999999999999999999984        68999998

>PF13962 PGG: Domain of unknown function

Probab=99.93  E-value=1.8e-25  Score=186.48  Aligned_cols=108  Identities=34%  Similarity=0.613  Sum_probs=95.2

Q ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHhhccCCCCCCCC----CCccccCCc-chhhHHHHHHHHHHHHHHHHHHHHHHhccC
Q 048145          406 QDWIKETSQSCSTLAILIATVVFTAAFTVPGGTNDK----GFPHFLESP-LFYVFTVMDVVSLALSLSSVVMFLSILTSS  480 (578)
Q Consensus       406 ~~~~~~~~~s~~vva~Liatvtfaa~~t~PGg~~~~----g~~~~~~~~-~f~~F~~~n~~a~~~S~~~~~~~~~~~~~~  480 (578)
                      +||++++++++++||+|||||||||++||||||+|+    |+|++.+++ .|++|+++|++||++|+++++++++.+   
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~~~~---   77 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLISGL---   77 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHHHHh---
Confidence            479999999999999999999999999999999764    999999888 999999999999999999987766322   


Q ss_pred             CccchhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048145          481 FDSSDFLSVLPSKLTIGFTLLFFSVLTSMITFSASILLI  519 (578)
Q Consensus       481 ~~~~~~~~~~~~~l~~~~~~l~~s~~~m~~af~~~~~~~  519 (578)
                         .++.+..++.+.++..++++++.+|++||++|+++|
T Consensus        78 ---~~~~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   78 ---DDFRRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence               444555567788899999999999999999999875

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.92  E-value=2.7e-25  Score=226.55  Aligned_cols=241  Identities=20%  Similarity=0.258  Sum_probs=202.4

Q ss_pred             CcccCChHHHHHHHhcCCc----------hhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCC
Q 048145            1 MALKGDRQGFLRYFAQQTD----------EELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGN   70 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~----------~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~   70 (578)
                      |+..||.+.+..+|+...+          ....+..|.+|.|+||.|+.+|+.++++.|++. .+.     ++..|..|-
T Consensus        10 a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~-ea~-----ldl~d~kg~   83 (854)
T KOG0507|consen   10 ACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDY-EAL-----LDLCDTKGI   83 (854)
T ss_pred             hhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcc-hhh-----hhhhhccCc
Confidence            6789999999999876221          133567788999999999999999999999998 665     888999999


Q ss_pred             hHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHH
Q 048145           71 TAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSK  145 (578)
Q Consensus        71 TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A  145 (578)
                      +|||+|+..|+.|+++.|+..+.        .+|..+..|+||||.|+.+||.+++.+|+.+     ..|..+.|+|-.|
T Consensus        84 ~plhlaaw~g~~e~vkmll~q~d--------~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA  155 (854)
T KOG0507|consen   84 LPLHLAAWNGNLEIVKMLLLQTD--------ILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLA  155 (854)
T ss_pred             ceEEehhhcCcchHHHHHHhccc--------CCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHH
Confidence            99999999999999999999997        8999999999999999999999999999998     7889999999999


Q ss_pred             HHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHH
Q 048145          146 MYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVE  225 (578)
Q Consensus       146 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  225 (578)
                      +        .-|.                .++++.|++.  ++.......      .                       
T Consensus       156 ~--------qfgr----------------~~Vvq~ll~~--~~~~~~~~~------~-----------------------  180 (854)
T KOG0507|consen  156 S--------RFGR----------------AEVVQMLLQK--KFPVQSSLR------V-----------------------  180 (854)
T ss_pred             H--------Hhhh----------------hHHHHHHhhh--ccchhhccc------C-----------------------
Confidence            9        6666                8999999886  221110000      0                       


Q ss_pred             HHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHH
Q 048145          226 LMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAI  305 (578)
Q Consensus       226 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~  305 (578)
                                        +           +-.++-.+-+|||.|+++||+++++.|++ .|.++|....+| |+||.|+
T Consensus       181 ------------------~-----------~~~~~~~~~~plHlaakngh~~~~~~ll~-ag~din~~t~~g-talheaa  229 (854)
T KOG0507|consen  181 ------------------G-----------DIKRPFPAIYPLHLAAKNGHVECMQALLE-AGFDINYTTEDG-TALHEAA  229 (854)
T ss_pred             ------------------C-----------CCCCCCCCcCCcchhhhcchHHHHHHHHh-cCCCcccccccc-hhhhhHh
Confidence                              0           00112234459999999999999999998 999999988776 8999999


Q ss_pred             HhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcc
Q 048145          306 MYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMK  346 (578)
Q Consensus       306 ~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~  346 (578)
                      ..|..++|.+|+     +.|.....+|.+|+|+|++-....
T Consensus       230 lcgk~evvr~ll-----~~gin~h~~n~~~qtaldil~d~~  265 (854)
T KOG0507|consen  230 LCGKAEVVRFLL-----EIGINTHIKNQHGQTALDIIIDLQ  265 (854)
T ss_pred             hcCcchhhhHHH-----hhccccccccccchHHHHHHHhcc
Confidence            999999999999     556678999999999999987654

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.92  E-value=6.5e-24  Score=198.91  Aligned_cols=169  Identities=14%  Similarity=0.169  Sum_probs=139.9

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcC--ChHHHHHHHccCCCchhhhhhhccC-CCCChHHHHHH
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAME--DPELIKKFLGRLPVEKRLEALMQTD-DNGNTAVHALA   77 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g--~~~~v~~Ll~~~~~~~~~~~l~~~d-~~G~TpLh~Aa   77 (578)
                      |+..|+.+.++.+++.      .+..|..|.||||+|+..+  +.+++++|+++ +++     ++.++ .+|.||||+|+
T Consensus        28 A~~~~~~~~vk~Li~~------~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~-gad-----vn~~~~~~g~TpLh~a~   95 (209)
T PHA02859         28 YVEKDDIEGVKKWIKF------VNDCNDLYETPIFSCLEKDKVNVEILKFLIEN-GAD-----VNFKTRDNNLSALHHYL   95 (209)
T ss_pred             HHHhCcHHHHHHHHHh------hhccCccCCCHHHHHHHcCCCCHHHHHHHHHC-CCC-----CCccCCCCCCCHHHHHH
Confidence            5678999978777754      2457889999999999854  89999999999 999     99997 48999999988


Q ss_pred             Hc---CCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHHHHHHHHHh
Q 048145           78 TI---NNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQV  154 (578)
Q Consensus        78 ~~---g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~~~~~~~~  154 (578)
                      ..   ++.+++++|+++|+        +++.+|..|.||||+|+.+.                                 
T Consensus        96 ~~~~~~~~eiv~~Ll~~ga--------din~~d~~G~TpLh~a~~~~---------------------------------  134 (209)
T PHA02859         96 SFNKNVEPEILKILIDSGS--------SITEEDEDGKNLLHMYMCNF---------------------------------  134 (209)
T ss_pred             HhCccccHHHHHHHHHCCC--------CCCCcCCCCCCHHHHHHHhc---------------------------------
Confidence            64   57999999999999        89999999999999987632                                 


Q ss_pred             ccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCC
Q 048145          155 IQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGC  234 (578)
Q Consensus       155 ~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  234 (578)
                       .|+                .+++++|+++|++++.+                                           
T Consensus       135 -~~~----------------~~iv~~Li~~gadin~~-------------------------------------------  154 (209)
T PHA02859        135 -NVR----------------INVIKLLIDSGVSFLNK-------------------------------------------  154 (209)
T ss_pred             -cCC----------------HHHHHHHHHcCCCcccc-------------------------------------------
Confidence             122                57777777777765433                                           


Q ss_pred             ccccccccCcccccccccccccccccccchhHHHH-HHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhC
Q 048145          235 TNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLF-AVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYR  308 (578)
Q Consensus       235 ~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~-Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g  308 (578)
                                        |.+|.|       |||. |+..|+.+++++|++ .|++++.+|..|+||||+|..++
T Consensus       155 ------------------d~~g~t-------~Lh~~a~~~~~~~iv~~Ll~-~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        155 ------------------DFDNNN-------ILYSYILFHSDKKIFDFLTS-LGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             ------------------cCCCCc-------HHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHhhhh
Confidence                              235566       9996 567889999999998 89999999999999999998764

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.91  E-value=4.4e-24  Score=239.77  Aligned_cols=178  Identities=15%  Similarity=0.175  Sum_probs=135.4

Q ss_pred             CCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccC
Q 048145           27 TFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVE  106 (578)
Q Consensus        27 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~  106 (578)
                      +.++.++||.||..|+.++++.|++. |.+     ++.+|.+|+||||+||..|+.+++++|+++|+        +++.+
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~-G~d-----~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga--------din~~  587 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKA-KLD-----PDIGDSKGRTPLHIAASKGYEDCVLVLLKHAC--------NVHIR  587 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHC-CCC-----CCCCCCCCCCHHHHHHHcChHHHHHHHHhcCC--------CCCCc
Confidence            34566778888888888888888877 777     78888888888888888888888888888877        77778


Q ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccc
Q 048145          107 NKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRI  186 (578)
Q Consensus       107 n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~  186 (578)
                      |.+|.||||+|+..||.+++++|++.                                                    ++
T Consensus       588 d~~G~TpL~~A~~~g~~~iv~~L~~~----------------------------------------------------~~  615 (823)
T PLN03192        588 DANGNTALWNAISAKHHKIFRILYHF----------------------------------------------------AS  615 (823)
T ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHhc----------------------------------------------------Cc
Confidence            88888888888888877777766542                                                    11


Q ss_pred             cccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhH
Q 048145          187 DDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRI  266 (578)
Q Consensus       187 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~p  266 (578)
                      ..+                                                               ...+.+       +
T Consensus       616 ~~~---------------------------------------------------------------~~~~~~-------~  625 (823)
T PLN03192        616 ISD---------------------------------------------------------------PHAAGD-------L  625 (823)
T ss_pred             ccC---------------------------------------------------------------cccCch-------H
Confidence            100                                                               012333       8


Q ss_pred             HHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCC-CchhhHHHhc
Q 048145          267 LLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEG-YTILHQVADM  345 (578)
Q Consensus       267 Lh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G-~T~LhlA~~~  345 (578)
                      ||.|+.+|+.++++.|++ .|+++|.+|.+|+||||+|+..|+.+++++|+     +.|++++.+|..| .||++++...
T Consensus       626 L~~Aa~~g~~~~v~~Ll~-~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll-----~~GAdv~~~~~~g~~t~~~l~~~~  699 (823)
T PLN03192        626 LCTAAKRNDLTAMKELLK-QGLNVDSEDHQGATALQVAMAEDHVDMVRLLI-----MNGADVDKANTDDDFSPTELRELL  699 (823)
T ss_pred             HHHHHHhCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHH-----HcCCCCCCCCCCCCCCHHHHHHHH
Confidence            888888888888888887 78888888888888888888888888888888     5667788888887 8888887654


Q ss_pred             c
Q 048145          346 K  346 (578)
Q Consensus       346 ~  346 (578)
                      .
T Consensus       700 ~  700 (823)
T PLN03192        700 Q  700 (823)
T ss_pred             H
Confidence            3

>PHA02795 ankyrin-like protein; Provisional

Probab=99.91  E-value=4.7e-24  Score=214.57  Aligned_cols=191  Identities=14%  Similarity=0.118  Sum_probs=161.5

Q ss_pred             HHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcc------cCCCCCCCHHHHHHH
Q 048145           46 IKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLV------VENKLGETPLYRAAS  119 (578)
Q Consensus        46 v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~------~~n~~g~TpLh~A~~  119 (578)
                      -++++.+ |.+     ++.++.+|     +|+..+..|++++|+++|+        +++      .+++.++|+||.++.
T Consensus        65 ~~~~~~~-~~~-----i~~~~~~~-----~~~~~~~k~~~~~l~s~~~--------~~~~~~~~~~~~~~~~~~L~~~~~  125 (437)
T PHA02795         65 YDYFRIH-RDN-----IDQYIVDR-----LFAYITYKDIISALVSKNY--------MEDIFSIIIKNCNSVQDLLLYYLS  125 (437)
T ss_pred             HHHHHHc-Ccc-----hhhhhhhh-----HHhhcchHHHHHHHHhccc--------ccchhhhhhhccccccHHHHHHHH
Confidence            3556666 777     88887777     9999999999999999999        666      678889999999999


Q ss_pred             --cCcHHHHHHHHHh---ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccC
Q 048145          120 --VGKIEALRYFAEQ---VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEK  194 (578)
Q Consensus       120 --~g~~~iv~~Ll~~---~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~  194 (578)
                        +|+.++|++|+++   ..-.++.||+|.|+        ..|+                .+++++|+++|++....  .
T Consensus       126 n~~n~~eiV~~LI~~GADIn~~~~~t~lh~A~--------~~~~----------------~eIVk~Lls~Ga~~~n~--~  179 (437)
T PHA02795        126 NAYVEIDIVDFMVDHGAVIYKIECLNAYFRGI--------CKKE----------------SSVVEFILNCGIPDEND--V  179 (437)
T ss_pred             hcCCCHHHHHHHHHCCCCCCCCCCCCHHHHHH--------HcCc----------------HHHHHHHHhcCCccccc--c
Confidence              8999999999999   22356789999999        7777                89999999999743211  0


Q ss_pred             CCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcC
Q 048145          195 PTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNG  274 (578)
Q Consensus       195 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G  274 (578)
                      .    +++                                                 .+..+.+       |+|.|+..+
T Consensus       180 ~----~~l-------------------------------------------------~~~~~~t-------~l~~a~~~~  199 (437)
T PHA02795        180 K----LDL-------------------------------------------------YKIIQYT-------RGFLVDEPT  199 (437)
T ss_pred             c----chh-------------------------------------------------hhhhccc-------hhHHHHhcC
Confidence            0    000                                                 0012334       999999999


Q ss_pred             HHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhccc
Q 048145          275 IIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKY  347 (578)
Q Consensus       275 ~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~  347 (578)
                      +.|+++.|++ +|+++|.+|..|+||||+|+.+|+.+++++|+     +.|+++|.+|..|+||||+|+..|+
T Consensus       200 ~~eIve~LIs-~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL-----~~GAdIN~~d~~G~TpLh~Aa~~g~  266 (437)
T PHA02795        200 VLEIYKLCIP-YIEDINQLDAGGRTLLYRAIYAGYIDLVSWLL-----ENGANVNAVMSNGYTCLDVAVDRGS  266 (437)
T ss_pred             HHHHHHHHHh-CcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHH-----HCCCCCCCcCCCCCCHHHHHHHcCC
Confidence            9999999998 89999999999999999999999999999999     6788899999999999999999885

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.91  E-value=5.5e-25  Score=192.45  Aligned_cols=211  Identities=17%  Similarity=0.167  Sum_probs=188.5

Q ss_pred             CCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCccc
Q 048145           26 RTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVV  105 (578)
Q Consensus        26 ~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~  105 (578)
                      ++..|+.-+-.|.++|+.+.+..++.-.+..     +...+.+|++++|.|+-.|+.+.+..++.++.        ..|.
T Consensus        58 ~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~-----~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~--------rgne  124 (296)
T KOG0502|consen   58 RNALGESLLTVAVRSGNSDVAVQSAQLDPDA-----IDETDPEGWSALLVAAPCGSVDKVSTTLTNGA--------RGNE  124 (296)
T ss_pred             HHhcCCcccchhhhcCCcHHHHHhhccCCCC-----CCCCCchhhhhhhhcCCCCCcceeeeeecccc--------cCCc
Confidence            4567888888999999999998888764444     66677889999999999999999999999998        7788


Q ss_pred             CCCCCCCHHHHHHHcCcHHHHHHHHHh---ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHH
Q 048145          106 ENKLGETPLYRAASVGKIEALRYFAEQ---VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLV  182 (578)
Q Consensus       106 ~n~~g~TpLh~A~~~g~~~iv~~Ll~~---~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll  182 (578)
                      .+--+.+|+.+++...|.+.+..+.+.   ..|+.|.|||.+|+        ..|+                ++++++|+
T Consensus       125 vs~~p~s~~slsVhql~L~~~~~~~~n~VN~~De~GfTpLiWAa--------a~G~----------------i~vV~fLL  180 (296)
T KOG0502|consen  125 VSLMPWSPLSLSVHQLHLDVVDLLVNNKVNACDEFGFTPLIWAA--------AKGH----------------IPVVQFLL  180 (296)
T ss_pred             cccccCChhhHHHHHHHHHHHHHHhhccccCccccCchHhHHHH--------hcCc----------------hHHHHHHH
Confidence            888899999999999999999998887   67899999999999        8899                99999999


Q ss_pred             hccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCccccccccccccccccccc
Q 048145          183 EKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMR  262 (578)
Q Consensus       183 ~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~  262 (578)
                      +.|+++....                                                             ....+    
T Consensus       181 ~~GAdp~~lg-------------------------------------------------------------k~res----  195 (296)
T KOG0502|consen  181 NSGADPDALG-------------------------------------------------------------KYRES----  195 (296)
T ss_pred             HcCCChhhhh-------------------------------------------------------------hhhhh----
Confidence            9999876541                                                             02233    


Q ss_pred             chhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHH
Q 048145          263 TMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQV  342 (578)
Q Consensus       263 g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA  342 (578)
                         +|.+|++.|..+||+.||. ++.++|..|.+|-|||-+|++.++.++++.|+     ..|++++..|..|++++++|
T Consensus       196 ---ALsLAt~ggytdiV~lLL~-r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll-----~sGAd~t~e~dsGy~~mdlA  266 (296)
T KOG0502|consen  196 ---ALSLATRGGYTDIVELLLT-REVDVNVYDWNGGTPLLYAVRGNHVKCVESLL-----NSGADVTQEDDSGYWIMDLA  266 (296)
T ss_pred             ---hHhHHhcCChHHHHHHHHh-cCCCcceeccCCCceeeeeecCChHHHHHHHH-----hcCCCcccccccCCcHHHHH
Confidence               9999999999999999998 88899999999999999999999999999999     67889999999999999999


Q ss_pred             Hhccc
Q 048145          343 ADMKY  347 (578)
Q Consensus       343 ~~~~~  347 (578)
                      +..|+
T Consensus       267 ValGy  271 (296)
T KOG0502|consen  267 VALGY  271 (296)
T ss_pred             HHhhh
Confidence            99985

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.91  E-value=1.5e-22  Score=226.23  Aligned_cols=222  Identities=17%  Similarity=0.161  Sum_probs=167.8

Q ss_pred             CCCCcHHHHHHhcCChHHHHHHHcc-CCCchhhhhhhccCCCCChHHH-HHHHcCCHHHHHHHHhhcCCCCCCCCCCccc
Q 048145           28 FNGECAIHVAAAMEDPELIKKFLGR-LPVEKRLEALMQTDDNGNTAVH-ALATINNVDVAKTLVEFSKQSNDADKNPLVV  105 (578)
Q Consensus        28 ~~g~T~Lh~Aa~~g~~~~v~~Ll~~-~~~~~~~~~l~~~d~~G~TpLh-~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~  105 (578)
                      ..++++|+.|++.|+.+.|+.+++. .+.+     +|..|..|.|||| .|+++++.+++++|+++|.            
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~-----in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~------------   77 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLN-----INCPDRLGRSALFVAAIENENLELTELLLNLSC------------   77 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccC-----CCCcCccchhHHHHHHHhcChHHHHHHHHhCCC------------
Confidence            4678999999999999999999987 2456     8889999999999 8889999999999998774            


Q ss_pred             CCCCCCCHHHHHHHcCcHHHHHHHHHh----c---------------cccCCccHHHHHHHHHHHHHhccCchHHHHHHH
Q 048145          106 ENKLGETPLYRAASVGKIEALRYFAEQ----V---------------NQTAAISILSSKMYIAIWRQVIQGCPAIKKIWE  166 (578)
Q Consensus       106 ~n~~g~TpLh~A~~~g~~~iv~~Ll~~----~---------------~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~  166 (578)
                      .+..|+||||.|+.+ +.+.++.++..    .               .+..|.||||+|+        ..|+        
T Consensus        78 ~~~~G~T~Lh~A~~~-~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa--------~~~~--------  140 (743)
T TIGR00870        78 RGAVGDTLLHAISLE-YVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAA--------HRQN--------  140 (743)
T ss_pred             CCCcChHHHHHHHhc-cHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHH--------HhCC--------
Confidence            467899999999973 33334444332    1               1246999999999        6677        


Q ss_pred             hhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCccc
Q 048145          167 KKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQA  246 (578)
Q Consensus       167 ~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~  246 (578)
                              .+++++|+++|++++....+..    ..                                     .   .  
T Consensus       141 --------~eiVklLL~~GAdv~~~~~~~~----~~-------------------------------------~---~--  166 (743)
T TIGR00870       141 --------YEIVKLLLERGASVPARACGDF----FV-------------------------------------K---S--  166 (743)
T ss_pred             --------HHHHHHHHhCCCCCCcCcCCch----hh-------------------------------------c---C--
Confidence                    8999999999999875422110    00                                     0   0  


Q ss_pred             ccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhC---------cHHHHHHHH
Q 048145          247 VDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYR---------QLEIFEIIK  317 (578)
Q Consensus       247 ~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g---------~~~iv~~Ll  317 (578)
                       ........|.|       |||.|+..|+.++++.|++ .|++++..|+.|+||||+|+..+         ...+.++++
T Consensus       167 -~~~~~~~~g~t-------pL~~Aa~~~~~~iv~lLl~-~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~  237 (743)
T TIGR00870       167 -QGVDSFYHGES-------PLNAAACLGSPSIVALLSE-DPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFAL  237 (743)
T ss_pred             -CCCCccccccc-------HHHHHHHhCCHHHHHHHhc-CCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence             00000113444       9999999999999999998 89999999999999999999987         233455555


Q ss_pred             Hhhchhhhhh----hhcccCCCCchhhHHHhcccc
Q 048145          318 EKMQLSLAEW----ALKIDNEGYTILHQVADMKYY  348 (578)
Q Consensus       318 ~~~~~~~~~~----~~~~d~~G~T~LhlA~~~~~~  348 (578)
                       ..+ +...+    .+.+|++|.||||+|+..|+.
T Consensus       238 -~ll-~~~~~~~el~~i~N~~g~TPL~~A~~~g~~  270 (743)
T TIGR00870       238 -SLL-DKLRDSKELEVILNHQGLTPLKLAAKEGRI  270 (743)
T ss_pred             -HHH-hccCChHhhhhhcCCCCCCchhhhhhcCCc
Confidence             222 11122    267899999999999999976

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.90  E-value=7.2e-24  Score=185.48  Aligned_cols=221  Identities=19%  Similarity=0.179  Sum_probs=188.0

Q ss_pred             ccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCH
Q 048145            3 LKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNV   82 (578)
Q Consensus         3 ~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~   82 (578)
                      .+|+.+..+....- .++.+ ...+++|.+++|.|+-+|+.+.+..++.+ +..     .|..+-.+++|+.+++...++
T Consensus        71 ~s~nsd~~v~s~~~-~~~~~-~~t~p~g~~~~~v~ap~~s~~k~sttltN-~~r-----gnevs~~p~s~~slsVhql~L  142 (296)
T KOG0502|consen   71 RSGNSDVAVQSAQL-DPDAI-DETDPEGWSALLVAAPCGSVDKVSTTLTN-GAR-----GNEVSLMPWSPLSLSVHQLHL  142 (296)
T ss_pred             hcCCcHHHHHhhcc-CCCCC-CCCCchhhhhhhhcCCCCCcceeeeeecc-ccc-----CCccccccCChhhHHHHHHHH
Confidence            45666644444333 33333 44566799999999999999999999998 888     888999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccC
Q 048145           83 DVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQG  157 (578)
Q Consensus        83 ~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G  157 (578)
                      +++..+.+.          .+|..|+.|.|||.+|+.+||.++|++|++.     ...+...|+|.+|+        ..|
T Consensus       143 ~~~~~~~~n----------~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt--------~gg  204 (296)
T KOG0502|consen  143 DVVDLLVNN----------KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLAT--------RGG  204 (296)
T ss_pred             HHHHHHhhc----------cccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHh--------cCC
Confidence            988887654          5789999999999999999999999999998     34577889999999        777


Q ss_pred             chHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccc
Q 048145          158 CPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNK  237 (578)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  237 (578)
                      .                .+++++|++++.+++.-                                              
T Consensus       205 y----------------tdiV~lLL~r~vdVNvy----------------------------------------------  222 (296)
T KOG0502|consen  205 Y----------------TDIVELLLTREVDVNVY----------------------------------------------  222 (296)
T ss_pred             h----------------HHHHHHHHhcCCCccee----------------------------------------------
Confidence            7                89999999998877643                                              


Q ss_pred             cccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHH
Q 048145          238 AHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIK  317 (578)
Q Consensus       238 ~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll  317 (578)
                                     |-+|.|       ||.+|++-||+++++.||+ .|++++..|..|.+++..|+..|+. +|+.++
T Consensus       223 ---------------DwNGgT-------pLlyAvrgnhvkcve~Ll~-sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvi  278 (296)
T KOG0502|consen  223 ---------------DWNGGT-------PLLYAVRGNHVKCVESLLN-SGADVTQEDDSGYWIMDLAVALGYR-IVQQVI  278 (296)
T ss_pred             ---------------ccCCCc-------eeeeeecCChHHHHHHHHh-cCCCcccccccCCcHHHHHHHhhhH-HHHHHH
Confidence                           236666       9999999999999999998 9999999999999999999999998 888888


Q ss_pred             HhhchhhhhhhhcccCCCCchhh
Q 048145          318 EKMQLSLAEWALKIDNEGYTILH  340 (578)
Q Consensus       318 ~~~~~~~~~~~~~~d~~G~T~Lh  340 (578)
                           ++-.+.+-+|+.-.||+|
T Consensus       279 -----e~h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  279 -----EKHALKLCQDSEKRTPLH  296 (296)
T ss_pred             -----HHHHHHHhhcccCCCCCC
Confidence                 445568889999999987

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.90  E-value=1.1e-20  Score=211.42  Aligned_cols=236  Identities=17%  Similarity=0.123  Sum_probs=171.8

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHH-HHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHc
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIH-VAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATI   79 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh-~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~   79 (578)
                      ||..||.+.+.+++++ ......+..|..|.|||| .|+..++.++++.|++. +.         ++..|+||||.|+..
T Consensus        24 A~~~g~~~~v~~lL~~-~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~-g~---------~~~~G~T~Lh~A~~~   92 (743)
T TIGR00870        24 AAERGDLASVYRDLEE-PKKLNINCPDRLGRSALFVAAIENENLELTELLLNL-SC---------RGAVGDTLLHAISLE   92 (743)
T ss_pred             HHHcCCHHHHHHHhcc-ccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhC-CC---------CCCcChHHHHHHHhc
Confidence            6889999999999987 445566788899999999 89999999999999987 42         567899999999973


Q ss_pred             C---CHHHHHHHHhhcCCCCCC--CCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----cc------------c--
Q 048145           80 N---NVDVAKTLVEFSKQSNDA--DKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VN------------Q--  135 (578)
Q Consensus        80 g---~~~iv~~Ll~~g~~~~~~--~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~------------~--  135 (578)
                      +   ..++++.+...+++....  ..+.....+..|.||||+|+.+|+.++|++|+++     ..            +  
T Consensus        93 ~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~  172 (743)
T TIGR00870        93 YVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSF  172 (743)
T ss_pred             cHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcc
Confidence            2   223344444444310000  0001122345799999999999999999999997     11            1  


Q ss_pred             cCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccc
Q 048145          136 TAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKV  215 (578)
Q Consensus       136 ~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  215 (578)
                      ..|.||||.|+        ..|+                .+++++|+++|++++..                        
T Consensus       173 ~~g~tpL~~Aa--------~~~~----------------~~iv~lLl~~gadin~~------------------------  204 (743)
T TIGR00870       173 YHGESPLNAAA--------CLGS----------------PSIVALLSEDPADILTA------------------------  204 (743)
T ss_pred             cccccHHHHHH--------HhCC----------------HHHHHHHhcCCcchhhH------------------------
Confidence            35899999999        6677                89999999988765433                        


Q ss_pred             cccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcC-----H----HHHHHHHHHHC
Q 048145          216 VDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNG-----I----IEILEEIRHKY  286 (578)
Q Consensus       216 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G-----~----~~iv~~Ll~~~  286 (578)
                                                           |..|+|       |||+|+..+     +    ..+.+.+++ .
T Consensus       205 -------------------------------------d~~g~T-------~Lh~A~~~~~~~~~~~~l~~~~~~~l~~-l  239 (743)
T TIGR00870       205 -------------------------------------DSLGNT-------LLHLLVMENEFKAEYEELSCQMYNFALS-L  239 (743)
T ss_pred             -------------------------------------hhhhhH-------HHHHHHhhhhhhHHHHHHHHHHHHHHHH-H
Confidence                                                 235555       999999987     2    234444544 3


Q ss_pred             CCc---c----cccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhc
Q 048145          287 PQT---L----DNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADM  345 (578)
Q Consensus       287 ~~~---i----~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~  345 (578)
                      ++.   .    +..|.+|.||||+|+..|+.+++++|+     ..+.........++.|.+++...
T Consensus       240 l~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL-----~~~~~~kk~~a~~~~~~~~~~~~  300 (743)
T TIGR00870       240 LDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKL-----AIKYKQKKFVAWPNGQQLLSLYW  300 (743)
T ss_pred             HhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHH-----HHHHhcceeeccCcchHhHhhhc
Confidence            332   3    678999999999999999999999999     33333445566778888887653

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.89  E-value=6.3e-23  Score=202.85  Aligned_cols=77  Identities=18%  Similarity=0.125  Sum_probs=71.8

Q ss_pred             chhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHH
Q 048145          263 TMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQV  342 (578)
Q Consensus       263 g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA  342 (578)
                      |.|+||+|+.+|..++.+.|++ .+.+++..|.+|+||||.|+-.|+.+++++|+     ..+++++.+...|.||+.+|
T Consensus       198 G~T~lHvAaa~Gy~e~~~lLl~-ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~-----~~ga~~d~~t~~g~~p~dv~  271 (527)
T KOG0505|consen  198 GATALHVAAANGYTEVAALLLQ-AGYSVNIKDYDGWTPLHAAAHWGQEDACELLV-----EHGADMDAKTKMGETPLDVA  271 (527)
T ss_pred             cchHHHHHHhhhHHHHHHHHHH-hccCcccccccCCCcccHHHHhhhHhHHHHHH-----HhhcccchhhhcCCCCccch
Confidence            4459999999999999999998 99999999999999999999999999999888     67888999999999999999


Q ss_pred             Hhc
Q 048145          343 ADM  345 (578)
Q Consensus       343 ~~~  345 (578)
                      ..-
T Consensus       272 dee  274 (527)
T KOG0505|consen  272 DEE  274 (527)
T ss_pred             hhh
Confidence            763

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.88  E-value=1.6e-22  Score=189.95  Aligned_cols=178  Identities=21%  Similarity=0.233  Sum_probs=140.8

Q ss_pred             CChHHHHHHHccCCCch---hhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHH
Q 048145           41 EDPELIKKFLGRLPVEK---RLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRA  117 (578)
Q Consensus        41 g~~~~v~~Ll~~~~~~~---~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A  117 (578)
                      -+.+.|+..+..+.+.+   ....+|.-|.+|+|+||||+..++.++|+.||+.|.       ++++.+|+-|.||+++|
T Consensus       237 a~pe~V~~~l~~f~als~~lL~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgv-------C~VD~qNrAGYtpiMLa  309 (452)
T KOG0514|consen  237 SDPEQVEDYLAYFEALSPPLLEYVVNLADSNGNTALHYAVSHANFDVVSILLDSGV-------CDVDQQNRAGYTPVMLA  309 (452)
T ss_pred             CCHHHHHHHHHHHHhcChHHHHHHhhhhcCCCCeeeeeeecccchHHHHHHhccCc-------ccccccccccccHHHHH
Confidence            45788876665533322   245578899999999999999999999999999999       89999999999999999


Q ss_pred             HHc-----CcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhcccc
Q 048145          118 ASV-----GKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRID  187 (578)
Q Consensus       118 ~~~-----g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~  187 (578)
                      +..     .+.++|+.|...     -..+.|+|+|++|+        .+|+                .++++.||.-|+|
T Consensus       310 ALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~gQTALMLAV--------SHGr----------------~d~vk~LLacgAd  365 (452)
T KOG0514|consen  310 ALAKLKQPADRTVVERLFKMGDVNAKASQHGQTALMLAV--------SHGR----------------VDMVKALLACGAD  365 (452)
T ss_pred             HHHhhcchhhHHHHHHHHhccCcchhhhhhcchhhhhhh--------hcCc----------------HHHHHHHHHccCC
Confidence            864     456778777775     23467888888888        7777                8888888887777


Q ss_pred             ccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHH
Q 048145          188 DCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRIL  267 (578)
Q Consensus       188 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pL  267 (578)
                      ++..                                                             |.+|.       |+|
T Consensus       366 VNiQ-------------------------------------------------------------DdDGS-------TAL  377 (452)
T KOG0514|consen  366 VNIQ-------------------------------------------------------------DDDGS-------TAL  377 (452)
T ss_pred             Cccc-------------------------------------------------------------cCCcc-------HHH
Confidence            6544                                                             22444       488


Q ss_pred             HHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHH
Q 048145          268 LFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIK  317 (578)
Q Consensus       268 h~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll  317 (578)
                      ++||++||.|+++.||....+++.+.|.+|.|+|.+|-+.||.+|.-+|.
T Consensus       378 MCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlY  427 (452)
T KOG0514|consen  378 MCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLY  427 (452)
T ss_pred             hhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchHHHHHHH
Confidence            88888888888888888777788888888888888888888888887777

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.86  E-value=1.1e-21  Score=200.60  Aligned_cols=206  Identities=24%  Similarity=0.239  Sum_probs=178.9

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN   80 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g   80 (578)
                      |+++|+.+ +.++|.+  .+..+...|..|.+|||+||..|+.++|+.++.. +..     +|..+..|.||||.||..|
T Consensus        56 a~Lng~~~-is~llle--~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q-~d~-----~na~~~e~~tplhlaaqhg  126 (854)
T KOG0507|consen   56 AVLNGQNQ-ISKLLLD--YEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQ-TDI-----LNAVNIENETPLHLAAQHG  126 (854)
T ss_pred             HHhcCchH-HHHHHhc--chhhhhhhhccCcceEEehhhcCcchHHHHHHhc-ccC-----CCcccccCcCccchhhhhc
Confidence            67889988 5555555  3556677789999999999999999999999998 666     9999999999999999999


Q ss_pred             CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-------------ccccCCccHHHHHHH
Q 048145           81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-------------VNQTAAISILSSKMY  147 (578)
Q Consensus        81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-------------~~~~~g~t~Lh~A~~  147 (578)
                      |.|++.+|+.+|+        +.-++|+.++|+|.+|++.|..++|+.|++.             ..+..+.+|||.|+ 
T Consensus       127 h~dvv~~Ll~~~a--------dp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaa-  197 (854)
T KOG0507|consen  127 HLEVVFYLLKKNA--------DPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAA-  197 (854)
T ss_pred             chHHHHHHHhcCC--------CccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhh-
Confidence            9999999999999        8999999999999999999999999999987             34567889999999 


Q ss_pred             HHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHH
Q 048145          148 IAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELM  227 (578)
Q Consensus       148 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  227 (578)
                             .+|+                .++++.|++.|.+++...                                   
T Consensus       198 -------kngh----------------~~~~~~ll~ag~din~~t-----------------------------------  219 (854)
T KOG0507|consen  198 -------KNGH----------------VECMQALLEAGFDINYTT-----------------------------------  219 (854)
T ss_pred             -------hcch----------------HHHHHHHHhcCCCccccc-----------------------------------
Confidence                   8888                999999999998876541                                   


Q ss_pred             HHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHh
Q 048145          228 IQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMY  307 (578)
Q Consensus       228 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~  307 (578)
                                                 +..|       +||.|+-.|..++|..|++ -|.+....|.+|+|+|.+-...
T Consensus       220 ---------------------------~~gt-------alheaalcgk~evvr~ll~-~gin~h~~n~~~qtaldil~d~  264 (854)
T KOG0507|consen  220 ---------------------------EDGT-------ALHEAALCGKAEVVRFLLE-IGINTHIKNQHGQTALDIIIDL  264 (854)
T ss_pred             ---------------------------ccch-------hhhhHhhcCcchhhhHHHh-hccccccccccchHHHHHHHhc
Confidence                                       2334       9999999999999999998 8889999999999999877654


Q ss_pred             ---CcHHHHHHHH
Q 048145          308 ---RQLEIFEIIK  317 (578)
Q Consensus       308 ---g~~~iv~~Ll  317 (578)
                         ...+++-++.
T Consensus       265 ~~~~~~ei~ga~~  277 (854)
T KOG0507|consen  265 QENRRYEIAGAVK  277 (854)
T ss_pred             chhhhhhhhhhhh
Confidence               4455555554

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.84  E-value=1.8e-20  Score=210.69  Aligned_cols=168  Identities=15%  Similarity=0.173  Sum_probs=137.8

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN   80 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g   80 (578)
                      ||..|+.+.++.+++.   +...+..|.+|+||||+||..|+.++|+.|+++ |++     ++.+|.+|+||||+|+..|
T Consensus       532 Aa~~g~~~~l~~Ll~~---G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~-gad-----in~~d~~G~TpL~~A~~~g  602 (823)
T PLN03192        532 VASTGNAALLEELLKA---KLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKH-ACN-----VHIRDANGNTALWNAISAK  602 (823)
T ss_pred             HHHcCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhc-CCC-----CCCcCCCCCCHHHHHHHhC
Confidence            5788999988888876   445678899999999999999999999999998 999     9999999999999999999


Q ss_pred             CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHHHHHHHHHhccCchH
Q 048145           81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPA  160 (578)
Q Consensus        81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~~~~~~~~~~G~~~  160 (578)
                      |.+++++|++.++        ..+  ...|.+|||.|+.+|+.+                                    
T Consensus       603 ~~~iv~~L~~~~~--------~~~--~~~~~~~L~~Aa~~g~~~------------------------------------  636 (823)
T PLN03192        603 HHKIFRILYHFAS--------ISD--PHAAGDLLCTAAKRNDLT------------------------------------  636 (823)
T ss_pred             CHHHHHHHHhcCc--------ccC--cccCchHHHHHHHhCCHH------------------------------------
Confidence            9999999998776        222  234667888888777754                                    


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCcccccc
Q 048145          161 IKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHV  240 (578)
Q Consensus       161 ~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~  240 (578)
                                      +++.|+++|++++..                                                 
T Consensus       637 ----------------~v~~Ll~~Gadin~~-------------------------------------------------  651 (823)
T PLN03192        637 ----------------AMKELLKQGLNVDSE-------------------------------------------------  651 (823)
T ss_pred             ----------------HHHHHHHCCCCCCCC-------------------------------------------------
Confidence                            455555556655432                                                 


Q ss_pred             ccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCC-ChHHHHHHHhC
Q 048145          241 DQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKG-QNILHVAIMYR  308 (578)
Q Consensus       241 ~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G-~t~Lh~A~~~g  308 (578)
                                  |.+|.|       |||+|+..|+.+++++|++ .|++++..|.+| .||++++....
T Consensus       652 ------------d~~G~T-------pLh~A~~~g~~~iv~~Ll~-~GAdv~~~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        652 ------------DHQGAT-------ALQVAMAEDHVDMVRLLIM-NGADVDKANTDDDFSPTELRELLQ  700 (823)
T ss_pred             ------------CCCCCC-------HHHHHHHCCcHHHHHHHHH-cCCCCCCCCCCCCCCHHHHHHHHH
Confidence                        335666       9999999999999999998 899999999988 89988875543

>PHA02741 hypothetical protein; Provisional

Probab=99.84  E-value=2.4e-20  Score=169.06  Aligned_cols=129  Identities=21%  Similarity=0.256  Sum_probs=114.4

Q ss_pred             hhccCCCCCCcHHHHHHhcCChHHHHHHHccC-----CCchhhhhhhccCCCCChHHHHHHHcCC----HHHHHHHHhhc
Q 048145           22 LLGYRTFNGECAIHVAAAMEDPELIKKFLGRL-----PVEKRLEALMQTDDNGNTAVHALATINN----VDVAKTLVEFS   92 (578)
Q Consensus        22 ~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~-----~~~~~~~~l~~~d~~G~TpLh~Aa~~g~----~~iv~~Ll~~g   92 (578)
                      +++.++..|.||||+|++.|+.++|+.|+...     +++     ++.+|..|+||||+|+..|+    .+++++|++.|
T Consensus        13 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~-----in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~g   87 (169)
T PHA02741         13 MIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAA-----LNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELG   87 (169)
T ss_pred             HhhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhh-----hhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcC
Confidence            45667889999999999999999999986532     466     89999999999999999999    58999999999


Q ss_pred             CCCCCCCCCCcccCCC-CCCCHHHHHHHcCcHHHHHHHHHh------ccccCCccHHHHHHHHHHHHHhccCchHHHHHH
Q 048145           93 KQSNDADKNPLVVENK-LGETPLYRAASVGKIEALRYFAEQ------VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIW  165 (578)
Q Consensus        93 ~~~~~~~~~~~~~~n~-~g~TpLh~A~~~g~~~iv~~Ll~~------~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~  165 (578)
                      +        +++.++. .|+||||+|+..++.+++++|++.      ..|.+|.||||+|+        ..|+       
T Consensus        88 a--------din~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~--------~~~~-------  144 (169)
T PHA02741         88 A--------DINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAI--------DNED-------  144 (169)
T ss_pred             C--------CCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHH--------HCCC-------
Confidence            9        8899885 899999999999999999999973      56889999999999        7777       


Q ss_pred             HhhhhhHHHHHHHHHHHhcccc
Q 048145          166 EKKQIHKKAVALVKMLVEKRID  187 (578)
Q Consensus       166 ~~~~~~~~~~~~v~~Ll~~g~~  187 (578)
                               .+++++|++.++.
T Consensus       145 ---------~~iv~~L~~~~~~  157 (169)
T PHA02741        145 ---------VAMMQILREIVAT  157 (169)
T ss_pred             ---------HHHHHHHHHHHHH
Confidence                     8999999987654

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.83  E-value=5.1e-21  Score=200.85  Aligned_cols=284  Identities=17%  Similarity=0.109  Sum_probs=211.5

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhcc-CCCCChHHHHHHHc
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQT-DDNGNTAVHALATI   79 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~-d~~G~TpLh~Aa~~   79 (578)
                      ||..|+-|.+..++.+   +...+-+|+.|.+||.+|+..||..+|+.|+.+ .++     ++.+ |..++|+|-+||..
T Consensus       764 acaggh~e~vellv~r---ganiehrdkkgf~plImaatagh~tvV~~llk~-ha~-----veaQsdrtkdt~lSlacsg  834 (2131)
T KOG4369|consen  764 ACAGGHREEVELLVVR---GANIEHRDKKGFVPLIMAATAGHITVVQDLLKA-HAD-----VEAQSDRTKDTMLSLACSG  834 (2131)
T ss_pred             cccCccHHHHHHHHHh---cccccccccccchhhhhhcccCchHHHHHHHhh-hhh-----hhhhcccccCceEEEecCC
Confidence            4566777755555555   556678899999999999999999999999988 777     6665 77899999999999


Q ss_pred             CCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-------ccccCCccHHHHHHHHHHHH
Q 048145           80 NNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-------VNQTAAISILSSKMYIAIWR  152 (578)
Q Consensus        80 g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-------~~~~~g~t~Lh~A~~~~~~~  152 (578)
                      |+.++|++||..|+        +-..+|-...|||.+|...|..+++..|+.+       .-.+-|.+||++|.      
T Consensus       835 gr~~vvelLl~~ga--------nkehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlat------  900 (2131)
T KOG4369|consen  835 GRTRVVELLLNAGA--------NKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLAT------  900 (2131)
T ss_pred             CcchHHHHHHHhhc--------cccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhh------
Confidence            99999999999999        5667888889999999999999999999987       23477899999999      


Q ss_pred             HhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhc
Q 048145          153 QVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKK  232 (578)
Q Consensus       153 ~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  232 (578)
                        .+|+                .+.++.|++.|.+++..-  .|.-.|++.+++-          .++.+.+.+|+..+.
T Consensus       901 --mngh----------------~~at~~ll~~gsdiNaqI--eTNrnTaltla~f----------qgr~evv~lLLa~~a  950 (2131)
T KOG4369|consen  901 --MNGH----------------QAATLSLLQPGSDINAQI--ETNRNTALTLALF----------QGRPEVVFLLLAAQA  950 (2131)
T ss_pred             --hccc----------------cHHHHHHhcccchhcccc--ccccccceeeccc----------cCcchHHHHHHHHhh
Confidence              6677                677777788777776552  2333444444432          333444444432222


Q ss_pred             CCc---------------------cccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCccc
Q 048145          233 GCT---------------------NKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLD  291 (578)
Q Consensus       233 ~~~---------------------~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~  291 (578)
                      +..                     ..+|++.   +.|.+.- .--+|    -.|+|-+++..||...++.|+. ..+.++
T Consensus       951 nvehRaktgltplme~AsgGyvdvg~~li~~---gad~nas-Pvp~T----~dtalti~a~kGh~kfv~~lln-~~atv~ 1021 (2131)
T KOG4369|consen  951 NVEHRAKTGLTPLMEMASGGYVDVGNLLIAA---GADTNAS-PVPNT----WDTALTIPANKGHTKFVPKLLN-GDATVR 1021 (2131)
T ss_pred             hhhhhcccCCcccchhhcCCccccchhhhhc---ccccccC-CCCCc----CCccceeecCCCchhhhHHhhC-Ccccee
Confidence            111                     1111111   1111110 01111    2238888999999999999997 777899


Q ss_pred             ccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcccccCC
Q 048145          292 NVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYYKQG  351 (578)
Q Consensus       292 ~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~~~~  351 (578)
                      .+|++|.|+|.+|+..|+...+..|+     +.+++++.+|+.-++++.-|.++||+.++
T Consensus      1022 v~NkkG~T~Lwla~~Gg~lss~~il~-----~~~ad~d~qdnr~~S~~maafRKgh~~iV 1076 (2131)
T KOG4369|consen 1022 VPNKKGCTVLWLASAGGALSSCPILV-----SSVADADQQDNRTNSRTMAAFRKGHFAIV 1076 (2131)
T ss_pred             cccCCCCcccchhccCCccccchHHh-----hcccChhhhhcccccccHHHHHhchhhee
Confidence            99999999999999999999999999     67888999999999999999999998764

>PHA02741 hypothetical protein; Provisional

Probab=99.83  E-value=1.1e-19  Score=164.65  Aligned_cols=132  Identities=17%  Similarity=0.208  Sum_probs=112.3

Q ss_pred             hhccCCCCChHHHHHHHcCCHHHHHHHHhh------cCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHhccc
Q 048145           62 LMQTDDNGNTAVHALATINNVDVAKTLVEF------SKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQ  135 (578)
Q Consensus        62 l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~------g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~  135 (578)
                      ++.+|..|.||||+|++.|+.++++.|+..      |+        +++.+|..|.||||+|+..|+.+++         
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga--------~in~~d~~g~T~Lh~A~~~g~~~~~---------   76 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAA--------ALNATDDAGQMCIHIAAEKHEAQLA---------   76 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhh--------hhhccCCCCCcHHHHHHHcCChHHH---------
Confidence            566788999999999999999999998653      34        7889999999999999998885432         


Q ss_pred             cCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccc
Q 048145          136 TAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKV  215 (578)
Q Consensus       136 ~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  215 (578)
                                                             .+++++|+++|++++..                        
T Consensus        77 ---------------------------------------~~ii~~Ll~~gadin~~------------------------   93 (169)
T PHA02741         77 ---------------------------------------AEIIDHLIELGADINAQ------------------------   93 (169)
T ss_pred             ---------------------------------------HHHHHHHHHcCCCCCCC------------------------
Confidence                                                   46677788877765433                        


Q ss_pred             cccchhhHHHHHHHHhcCCccccccccCcccccccccc-cccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccc
Q 048145          216 VDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDT-TKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVN  294 (578)
Q Consensus       216 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~-~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d  294 (578)
                                                           + ..|+|       |||+|+..|+.++++.|++..+.+++..|
T Consensus        94 -------------------------------------~~~~g~T-------pLh~A~~~~~~~iv~~Ll~~~g~~~~~~n  129 (169)
T PHA02741         94 -------------------------------------EMLEGDT-------ALHLAAHRRDHDLAEWLCCQPGIDLHFCN  129 (169)
T ss_pred             -------------------------------------CcCCCCC-------HHHHHHHcCCHHHHHHHHhCCCCCCCcCC
Confidence                                                 1 14556       99999999999999999975689999999


Q ss_pred             cCCChHHHHHHHhCcHHHHHHHH
Q 048145          295 EKGQNILHVAIMYRQLEIFEIIK  317 (578)
Q Consensus       295 ~~G~t~Lh~A~~~g~~~iv~~Ll  317 (578)
                      .+|+||||+|+..++.+++++|+
T Consensus       130 ~~g~tpL~~A~~~~~~~iv~~L~  152 (169)
T PHA02741        130 ADNKSPFELAIDNEDVAMMQILR  152 (169)
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHH
Confidence            99999999999999999999998

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.83  E-value=5.6e-20  Score=165.75  Aligned_cols=145  Identities=19%  Similarity=0.177  Sum_probs=115.7

Q ss_pred             hhccCCCCChHHHHHHHcCCH----HHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHhccccC
Q 048145           62 LMQTDDNGNTAVHALATINNV----DVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTA  137 (578)
Q Consensus        62 l~~~d~~G~TpLh~Aa~~g~~----~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~  137 (578)
                      ++..+.++.++||.||+.|+.    +++++|++.|+        +++.+|..|.||||+|+.+|+.+.            
T Consensus        13 ~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~--------~~~~~d~~g~t~Lh~Aa~~g~~~~------------   72 (166)
T PHA02743         13 AVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGH--------LLHRYDHHGRQCTHMVAWYDRANA------------   72 (166)
T ss_pred             HhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcch--------hhhccCCCCCcHHHHHHHhCccCH------------
Confidence            566777888899999999987    66667777787        788888889999999998876432            


Q ss_pred             CccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccc
Q 048145          138 AISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVD  217 (578)
Q Consensus       138 g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  217 (578)
                                                           ++++++|+++|++++..                          
T Consensus        73 -------------------------------------~~~i~~Ll~~Gadin~~--------------------------   89 (166)
T PHA02743         73 -------------------------------------VMKIELLVNMGADINAR--------------------------   89 (166)
T ss_pred             -------------------------------------HHHHHHHHHcCCCCCCC--------------------------
Confidence                                                 34567777777765433                          


Q ss_pred             cchhhHHHHHHHHhcCCccccccccCcccccccccc-cccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccC
Q 048145          218 VSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDT-TKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEK  296 (578)
Q Consensus       218 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~-~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~  296 (578)
                                                         | ..|+|       |||+|+..|+.+++++|++..+++++..|..
T Consensus        90 -----------------------------------d~~~g~T-------pLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~  127 (166)
T PHA02743         90 -----------------------------------ELGTGNT-------LLHIAASTKNYELAEWLCRQLGVNLGAINYQ  127 (166)
T ss_pred             -----------------------------------CCCCCCc-------HHHHHHHhCCHHHHHHHHhccCCCccCcCCC
Confidence                                               1 14555       9999999999999999996578899999999


Q ss_pred             CChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCC
Q 048145          297 GQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGY  336 (578)
Q Consensus       297 G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~  336 (578)
                      |+||||+|+..++.+++++|+     +.|++++.+|..|.
T Consensus       128 g~tpL~~A~~~~~~~iv~~Ll-----~~ga~~~~~~~~~~  162 (166)
T PHA02743        128 HETAYHIAYKMRDRRMMEILR-----ANGAVCDDPLSIGL  162 (166)
T ss_pred             CCCHHHHHHHcCCHHHHHHHH-----HcCCCCCCcccCCc
Confidence            999999999999999999998     56677888888774

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.83  E-value=7.5e-20  Score=181.18  Aligned_cols=226  Identities=21%  Similarity=0.209  Sum_probs=161.2

Q ss_pred             cHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCC
Q 048145           32 CAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGE  111 (578)
Q Consensus        32 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~  111 (578)
                      -.+.-|+..|+.+-|+.|+.. +++     ++..|.+|.|+||-+|...+.+||++|+++|+        +++..|..|+
T Consensus        42 a~~l~A~~~~d~~ev~~ll~~-ga~-----~~~~n~DglTalhq~~id~~~e~v~~l~e~ga--------~Vn~~d~e~w  107 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLLNR-GAS-----PNLCNVDGLTALHQACIDDNLEMVKFLVENGA--------NVNAQDNEGW  107 (527)
T ss_pred             HHHHhccccccHHHHHHHhcc-CCC-----ccccCCccchhHHHHHhcccHHHHHHHHHhcC--------CccccccccC
Confidence            456678888999999999988 788     88889999999999999999999999999998        8999999999


Q ss_pred             CHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHh-cc
Q 048145          112 TPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVE-KR  185 (578)
Q Consensus       112 TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~-~g  185 (578)
                      ||||.|+..||.+++++|+..     ..|.+|..|+-.+..        .-.                .++...-.. .|
T Consensus       108 tPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~--------ea~----------------~~~l~~~~~r~g  163 (527)
T KOG0505|consen  108 TPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAED--------EAT----------------LDVLETEMARQG  163 (527)
T ss_pred             CcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccC--------cch----------------hHHHHHHHHHhc
Confidence            999999999999999998887     456667777655541        000                111111111 01


Q ss_pred             ccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchh
Q 048145          186 IDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMR  265 (578)
Q Consensus       186 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~  265 (578)
                      .++...                                                            .....++       
T Consensus       164 i~iea~------------------------------------------------------------R~~~e~~-------  176 (527)
T KOG0505|consen  164 IDIEAA------------------------------------------------------------RKAEEQT-------  176 (527)
T ss_pred             ccHHHH------------------------------------------------------------hhhhHHH-------
Confidence            110000                                                            0001111       


Q ss_pred             HHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhc
Q 048145          266 ILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADM  345 (578)
Q Consensus       266 pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~  345 (578)
                      -|         +=++..+. .|...+..+..|.|.||+|+.+|..++.++|+     ..|.+++.+|.+|+||||.|+..
T Consensus       177 ml---------~D~~q~l~-~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl-----~ag~~~~~~D~dgWtPlHAAA~W  241 (527)
T KOG0505|consen  177 ML---------DDARQWLN-AGAELDARHARGATALHVAAANGYTEVAALLL-----QAGYSVNIKDYDGWTPLHAAAHW  241 (527)
T ss_pred             HH---------HHHHHHHh-ccccccccccccchHHHHHHhhhHHHHHHHHH-----HhccCcccccccCCCcccHHHHh
Confidence            12         12333444 77788888888999999999999999999999     56778999999999999999998


Q ss_pred             ccccCCCCCChHHhHHHHHHHHHHHHhhCCCccccccccCCCCChhhhhhh
Q 048145          346 KYYKQGTQAGPVLQFQDELEWFERVKDIAPPHYAMHRDKNKRMTANDLFDL  396 (578)
Q Consensus       346 ~~~~~~~~~~~~l~l~~~l~~~~~v~~~~~~~~~~~~n~~~g~t~~~l~~~  396 (578)
                      |+.                   +..+.++..+..+......|.||.|++.+
T Consensus       242 g~~-------------------~~~elL~~~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  242 GQE-------------------DACELLVEHGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             hhH-------------------hHHHHHHHhhcccchhhhcCCCCccchhh
Confidence            854                   22333333344444444489999998766

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.82  E-value=3.1e-20  Score=174.63  Aligned_cols=156  Identities=15%  Similarity=0.149  Sum_probs=128.1

Q ss_pred             CcccCCCCCCCHHHHHHHcCcHHHHHHHHHh------ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHH
Q 048145          102 PLVVENKLGETPLYRAASVGKIEALRYFAEQ------VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAV  175 (578)
Q Consensus       102 ~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~------~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~  175 (578)
                      -+|..|.+|+|+||||+.++++++|+.|++.      ..|..|.||+++++...+              ..+.     ..
T Consensus       260 vVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~l--------------k~~~-----d~  320 (452)
T KOG0514|consen  260 VVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKL--------------KQPA-----DR  320 (452)
T ss_pred             HhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhh--------------cchh-----hH
Confidence            3678899999999999999999999999998      467889999999984331              1111     15


Q ss_pred             HHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccc
Q 048145          176 ALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTK  255 (578)
Q Consensus       176 ~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~  255 (578)
                      ++|..|..-|. ++.+                                                            ....
T Consensus       321 ~vV~~LF~mgn-VNaK------------------------------------------------------------AsQ~  339 (452)
T KOG0514|consen  321 TVVERLFKMGD-VNAK------------------------------------------------------------ASQH  339 (452)
T ss_pred             HHHHHHHhccC-cchh------------------------------------------------------------hhhh
Confidence            67777665432 2211                                                            0126


Q ss_pred             cccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCC
Q 048145          256 DMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEG  335 (578)
Q Consensus       256 g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G  335 (578)
                      |+|       +|++|+.+|++++|+.||. |++++|.+|.+|.|+|+.|+++||.||+++||-    ..+.++...|.+|
T Consensus       340 gQT-------ALMLAVSHGr~d~vk~LLa-cgAdVNiQDdDGSTALMCA~EHGhkEivklLLA----~p~cd~sLtD~Dg  407 (452)
T KOG0514|consen  340 GQT-------ALMLAVSHGRVDMVKALLA-CGADVNIQDDDGSTALMCAAEHGHKEIVKLLLA----VPSCDISLTDVDG  407 (452)
T ss_pred             cch-------hhhhhhhcCcHHHHHHHHH-ccCCCccccCCccHHHhhhhhhChHHHHHHHhc----cCcccceeecCCC
Confidence            777       9999999999999999998 999999999999999999999999999999993    2455788999999


Q ss_pred             CchhhHHHhccccc
Q 048145          336 YTILHQVADMKYYK  349 (578)
Q Consensus       336 ~T~LhlA~~~~~~~  349 (578)
                      -|+|.+|...||.+
T Consensus       408 STAl~IAleagh~e  421 (452)
T KOG0514|consen  408 STALSIALEAGHRE  421 (452)
T ss_pred             chhhhhHHhcCchH
Confidence            99999999999863

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.81  E-value=4.3e-19  Score=160.00  Aligned_cols=131  Identities=13%  Similarity=0.040  Sum_probs=114.2

Q ss_pred             hccCCCCCCcHHHHHHhcCCh----HHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHH---HHHHHHhhcCCC
Q 048145           23 LGYRTFNGECAIHVAAAMEDP----ELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVD---VAKTLVEFSKQS   95 (578)
Q Consensus        23 ~~~~~~~g~T~Lh~Aa~~g~~----~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~---iv~~Ll~~g~~~   95 (578)
                      ....+.++.++||.||+.|+.    +++++|++. +.+     ++.+|.+|+||||+|+..|+.+   ++++|++.|+  
T Consensus        13 ~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~-g~~-----~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Ga--   84 (166)
T PHA02743         13 AVEIDEDEQNTFLRICRTGNIYELMEVAPFISGD-GHL-----LHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGA--   84 (166)
T ss_pred             HhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhc-chh-----hhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCC--
Confidence            345667888999999999998    566667766 777     8999999999999999998865   4899999999  


Q ss_pred             CCCCCCCcccCC-CCCCCHHHHHHHcCcHHHHHHHHH-h-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhh
Q 048145           96 NDADKNPLVVEN-KLGETPLYRAASVGKIEALRYFAE-Q-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKK  168 (578)
Q Consensus        96 ~~~~~~~~~~~n-~~g~TpLh~A~~~g~~~iv~~Ll~-~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~  168 (578)
                            +++.++ ..|.||||+|+..|+.+++++|++ .     ..+..|.||||+|+        ..|+          
T Consensus        85 ------din~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~--------~~~~----------  140 (166)
T PHA02743         85 ------DINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAY--------KMRD----------  140 (166)
T ss_pred             ------CCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHH--------HcCC----------
Confidence                  899998 589999999999999999999996 3     56789999999999        6677          


Q ss_pred             hhhHHHHHHHHHHHhcccccccc
Q 048145          169 QIHKKAVALVKMLVEKRIDDCAT  191 (578)
Q Consensus       169 ~~~~~~~~~v~~Ll~~g~~~~~~  191 (578)
                            .+++++|+++|++.+.+
T Consensus       141 ------~~iv~~Ll~~ga~~~~~  157 (166)
T PHA02743        141 ------RRMMEILRANGAVCDDP  157 (166)
T ss_pred             ------HHHHHHHHHcCCCCCCc
Confidence                  89999999999988766

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.79  E-value=3.6e-19  Score=159.02  Aligned_cols=133  Identities=14%  Similarity=0.157  Sum_probs=108.2

Q ss_pred             hhccCCCCCCcHHHHHHhcCChHHHHHHHcc-CCCchhhhhhhccCCCCChHHHHHHHcCCH---HHHHHHHhhcCCCCC
Q 048145           22 LLGYRTFNGECAIHVAAAMEDPELIKKFLGR-LPVEKRLEALMQTDDNGNTAVHALATINNV---DVAKTLVEFSKQSND   97 (578)
Q Consensus        22 ~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~-~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~---~iv~~Ll~~g~~~~~   97 (578)
                      ..+..|.+|.||||+|++.|+.  ++.+... ...+....+++.+|.+|.||||+|+..|+.   +++++|++.|+    
T Consensus         9 ~~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~ga----   82 (154)
T PHA02736          9 FASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGA----   82 (154)
T ss_pred             HHHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCC----
Confidence            4466788999999999999983  3333322 011111233667899999999999999987   46899999999    


Q ss_pred             CCCCCcccCC-CCCCCHHHHHHHcCcHHHHHHHHHh------ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhh
Q 048145           98 ADKNPLVVEN-KLGETPLYRAASVGKIEALRYFAEQ------VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQI  170 (578)
Q Consensus        98 ~~~~~~~~~n-~~g~TpLh~A~~~g~~~iv~~Ll~~------~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~  170 (578)
                          +++.++ ..|+||||+|+..|+.+++++|++.      ..+..|.||||+|+        ..|+            
T Consensus        83 ----din~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~--------~~~~------------  138 (154)
T PHA02736         83 ----DINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVAC--------ERHD------------  138 (154)
T ss_pred             ----CccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHH--------HcCC------------
Confidence                889988 4899999999999999999999973      56789999999999        6777            


Q ss_pred             hHHHHHHHHHHHhccccc
Q 048145          171 HKKAVALVKMLVEKRIDD  188 (578)
Q Consensus       171 ~~~~~~~v~~Ll~~g~~~  188 (578)
                          .+++++|+++|++.
T Consensus       139 ----~~i~~~Ll~~ga~~  152 (154)
T PHA02736        139 ----AKMMNILRAKGAQC  152 (154)
T ss_pred             ----HHHHHHHHHcCCCC
Confidence                89999999998765

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.79  E-value=3e-19  Score=150.90  Aligned_cols=130  Identities=18%  Similarity=0.170  Sum_probs=117.9

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN   80 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g   80 (578)
                      |+..|.+..|+++|.+  ....++.+|.+|.||||-|+++|+.+||+.|+.. +++     .+.+...|+||||-||..+
T Consensus        70 aae~nrl~eV~~lL~e--~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~-gAn-----~~a~T~~GWTPLhSAckWn  141 (228)
T KOG0512|consen   70 AAEKNRLTEVQRLLSE--KANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLS-GAN-----KEAKTNEGWTPLHSACKWN  141 (228)
T ss_pred             HHhhccHHHHHHHHHh--ccccccccccccccHHHHHHhcCchHHHHHHHHc-cCC-----cccccccCccchhhhhccc
Confidence            5678889999999999  6778899999999999999999999999999998 999     9999999999999999999


Q ss_pred             CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHH-HHHHHHHh------ccccCCccHHHHHH
Q 048145           81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE-ALRYFAEQ------VNQTAAISILSSKM  146 (578)
Q Consensus        81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~-iv~~Ll~~------~~~~~g~t~Lh~A~  146 (578)
                      +.+++-.|+++|+        +++...+...||||+||...+.. .+++|+..      ..+..+.||+.+|-
T Consensus       142 N~~va~~LLqhga--------DVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iAR  206 (228)
T KOG0512|consen  142 NFEVAGRLLQHGA--------DVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIAR  206 (228)
T ss_pred             chhHHHHHHhccC--------cccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHH
Confidence            9999999999999        99999999999999999877654 55666654      56788999999986

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.79  E-value=9.7e-20  Score=191.37  Aligned_cols=244  Identities=15%  Similarity=0.096  Sum_probs=173.0

Q ss_pred             CCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcc-cC
Q 048145           28 FNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLV-VE  106 (578)
Q Consensus        28 ~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~-~~  106 (578)
                      .+-+|+|-.||+.||.|+|++|+.+ |++     +..+|+.|.+||.+|+..||..+|+.|+.+.+        ++. ..
T Consensus       755 ~n~~t~LT~acaggh~e~vellv~r-gan-----iehrdkkgf~plImaatagh~tvV~~llk~ha--------~veaQs  820 (2131)
T KOG4369|consen  755 PNIKTNLTSACAGGHREEVELLVVR-GAN-----IEHRDKKGFVPLIMAATAGHITVVQDLLKAHA--------DVEAQS  820 (2131)
T ss_pred             ccccccccccccCccHHHHHHHHHh-ccc-----ccccccccchhhhhhcccCchHHHHHHHhhhh--------hhhhhc
Confidence            4568999999999999999999999 999     99999999999999999999999999999998        555 45


Q ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHH
Q 048145          107 NKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKML  181 (578)
Q Consensus       107 n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~L  181 (578)
                      |..++|+|.+||..|+.++|+.|+..     -++....|||.+|.        ..|.                .++++.|
T Consensus       821 drtkdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~--------Sggy----------------~~iI~~l  876 (2131)
T KOG4369|consen  821 DRTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLAR--------SGGY----------------TKIIHAL  876 (2131)
T ss_pred             ccccCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhc--------Ccch----------------HHHHHHH
Confidence            78899999999999999999999998     45667889999998        6677                8999999


Q ss_pred             HhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccc-ccccccccc
Q 048145          182 VEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQEN-DTTKDMTSS  260 (578)
Q Consensus       182 l~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~-~~~~g~t~~  260 (578)
                      +..|.+++.. .+...|..||.++..          .+..+....++.-.               .++|. ...+.+|  
T Consensus       877 lS~GseInSr-tgSklgisPLmlatm----------ngh~~at~~ll~~g---------------sdiNaqIeTNrnT--  928 (2131)
T KOG4369|consen  877 LSSGSEINSR-TGSKLGISPLMLATM----------NGHQAATLSLLQPG---------------SDINAQIETNRNT--  928 (2131)
T ss_pred             hhcccccccc-cccccCcchhhhhhh----------ccccHHHHHHhccc---------------chhcccccccccc--
Confidence            9999998876 233345555544432          22333333332111               11111 0112333  


Q ss_pred             ccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhc--ccCCCCch
Q 048145          261 MRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALK--IDNEGYTI  338 (578)
Q Consensus       261 ~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~--~d~~G~T~  338 (578)
                           +|-+|+..|+.|++..||. ..++++.+-+.|-|||+-++..|..++=++|+     +.|+|.|.  .-+.-.|+
T Consensus       929 -----altla~fqgr~evv~lLLa-~~anvehRaktgltplme~AsgGyvdvg~~li-----~~gad~nasPvp~T~dta  997 (2131)
T KOG4369|consen  929 -----ALTLALFQGRPEVVFLLLA-AQANVEHRAKTGLTPLMEMASGGYVDVGNLLI-----AAGADTNASPVPNTWDTA  997 (2131)
T ss_pred             -----ceeeccccCcchHHHHHHH-HhhhhhhhcccCCcccchhhcCCccccchhhh-----hcccccccCCCCCcCCcc
Confidence                 6666666666666666665 55556666666666666666666666666665     45555554  22344556


Q ss_pred             hhHHHhcccc
Q 048145          339 LHQVADMKYY  348 (578)
Q Consensus       339 LhlA~~~~~~  348 (578)
                      |-+++..||.
T Consensus       998 lti~a~kGh~ 1007 (2131)
T KOG4369|consen  998 LTIPANKGHT 1007 (2131)
T ss_pred             ceeecCCCch
Confidence            6666655553

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.78  E-value=5.7e-19  Score=157.72  Aligned_cols=52  Identities=15%  Similarity=0.085  Sum_probs=50.0

Q ss_pred             HHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHH
Q 048145          266 ILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIK  317 (578)
Q Consensus       266 pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll  317 (578)
                      |||+|+..|+.+++++|++..+.+++..|..|+||||+|+..|+.+++++|+
T Consensus        95 ~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll  146 (154)
T PHA02736         95 PLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILR  146 (154)
T ss_pred             HHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999997568999999999999999999999999999999

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.77  E-value=1.2e-16  Score=166.26  Aligned_cols=206  Identities=17%  Similarity=0.137  Sum_probs=151.4

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhhcCCCC-CCCCCCcccCCCCCCCHHHHHHHc---CcHHHHHHHHHh----------ccc
Q 048145           70 NTAVHALATINNVDVAKTLVEFSKQSN-DADKNPLVVENKLGETPLYRAASV---GKIEALRYFAEQ----------VNQ  135 (578)
Q Consensus        70 ~TpLh~Aa~~g~~~iv~~Ll~~g~~~~-~~~~~~~~~~n~~g~TpLh~A~~~---g~~~iv~~Ll~~----------~~~  135 (578)
                      +.++..|...|.++...-|+..+...- ...-.+++.+..-|+|.||.|..+   ++.++++.|++.          ...
T Consensus       102 ~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~ee  181 (782)
T KOG3676|consen  102 RDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEE  181 (782)
T ss_pred             hhhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHh
Confidence            367888888888888888877662100 000036778888999999999974   567899999987          234


Q ss_pred             cCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccc
Q 048145          136 TAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKV  215 (578)
Q Consensus       136 ~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  215 (578)
                      ..|.||||+|+.        +-+                .++|++|++.|+|++....|.--.       ..++.     
T Consensus       182 Y~GqSaLHiAIv--------~~~----------------~~~V~lLl~~gADV~aRa~G~FF~-------~~dqk-----  225 (782)
T KOG3676|consen  182 YYGQSALHIAIV--------NRD----------------AELVRLLLAAGADVHARACGAFFC-------PDDQK-----  225 (782)
T ss_pred             hcCcchHHHHHH--------hcc----------------HHHHHHHHHcCCchhhHhhccccC-------ccccc-----
Confidence            689999999994        334                799999999999998774332100       00000     


Q ss_pred             cccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCccccccc
Q 048145          216 VDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNE  295 (578)
Q Consensus       216 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~  295 (578)
                                                     ......|..|.  --.|..||-+||.-++.|++++|++ +|+|++.+|+
T Consensus       226 -------------------------------~~rk~T~Y~G~--~YfGEyPLSfAAC~nq~eivrlLl~-~gAd~~aqDS  271 (782)
T KOG3676|consen  226 -------------------------------ASRKSTNYTGY--FYFGEYPLSFAACTNQPEIVRLLLA-HGADPNAQDS  271 (782)
T ss_pred             -------------------------------ccccccCCcce--eeeccCchHHHHHcCCHHHHHHHHh-cCCCCCcccc
Confidence                                           00000111111  1124449999999999999999999 9999999999


Q ss_pred             CCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcccc
Q 048145          296 KGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYY  348 (578)
Q Consensus       296 ~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~  348 (578)
                      +|+|.||..+..-..++.++++ .++..  ++...+|++|-|||-+||+.|..
T Consensus       272 ~GNTVLH~lVi~~~~~My~~~L-~~ga~--~l~~v~N~qgLTPLtLAaklGk~  321 (782)
T KOG3676|consen  272 NGNTVLHMLVIHFVTEMYDLAL-ELGAN--ALEHVRNNQGLTPLTLAAKLGKK  321 (782)
T ss_pred             CCChHHHHHHHHHHHHHHHHHH-hcCCC--ccccccccCCCChHHHHHHhhhH
Confidence            9999999999999999999999 44432  44889999999999999999853

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.75  E-value=1.2e-18  Score=158.92  Aligned_cols=128  Identities=18%  Similarity=0.194  Sum_probs=113.5

Q ss_pred             ccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCH
Q 048145            3 LKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNV   82 (578)
Q Consensus         3 ~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~   82 (578)
                      ++|+.-.+.-.|++  .+..++.-|..|.+|||+||+.|+..+|+.|+.+ |+.     +|..|...+||||+||..||.
T Consensus         9 regna~qvrlwld~--tehdln~gddhgfsplhwaakegh~aivemll~r-gar-----vn~tnmgddtplhlaaahghr   80 (448)
T KOG0195|consen    9 REGNAFQVRLWLDD--TEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSR-GAR-----VNSTNMGDDTPLHLAAAHGHR   80 (448)
T ss_pred             hcCCeEEEEEEecC--cccccccccccCcchhhhhhhcccHHHHHHHHhc-ccc-----cccccCCCCcchhhhhhcccH
Confidence            34544444445555  3445677788999999999999999999999999 999     999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHH
Q 048145           83 DVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKM  146 (578)
Q Consensus        83 ~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~  146 (578)
                      ++|+.|+++.+        ++|..|+.|+||||+||.-|...+.+-|+..     +.+++|.|||.-|-
T Consensus        81 divqkll~~ka--------dvnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen   81 DIVQKLLSRKA--------DVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             HHHHHHHHHhc--------ccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhc
Confidence            99999999999        9999999999999999999999999999998     78999999998764

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.75  E-value=2e-17  Score=160.62  Aligned_cols=110  Identities=12%  Similarity=0.136  Sum_probs=97.5

Q ss_pred             hccCCCCCCc-HHHHHHhcCChHHHHHHHccCCCchhhhhhhccC----CCCChHHHHHHHcCCHHHHHHHHhhcCCCCC
Q 048145           23 LGYRTFNGEC-AIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTD----DNGNTAVHALATINNVDVAKTLVEFSKQSND   97 (578)
Q Consensus        23 ~~~~~~~g~T-~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d----~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~   97 (578)
                      ...+|..|.| +||.|++.|+.++++.|+++ |++     ++.++    ..|.||||+|++.|+.+++++|+++|+    
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~-GAd-----iN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GA----   94 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKL-GAD-----PEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGA----   94 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHC-CCC-----ccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCC----
Confidence            3456666655 67777788999999999999 999     98874    589999999999999999999999999    


Q ss_pred             CCCCCcccC-CCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHH
Q 048145           98 ADKNPLVVE-NKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKM  146 (578)
Q Consensus        98 ~~~~~~~~~-n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~  146 (578)
                          +++.+ +..|.||||+|+..|+.+++++|++.     ..|.+|.||||+|+
T Consensus        95 ----DVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~  145 (300)
T PHA02884         95 ----DVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELAL  145 (300)
T ss_pred             ----CcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence                89986 56799999999999999999999998     56788999999998

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.73  E-value=2.9e-17  Score=159.54  Aligned_cols=142  Identities=8%  Similarity=-0.041  Sum_probs=118.5

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccC----CCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhcc-CCCCChHHHH
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYR----TFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQT-DDNGNTAVHA   75 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~----~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~-d~~G~TpLh~   75 (578)
                      |+..|+.+.+..+++.  +. ..+..    +..|.||||+|+..|+.+++++|+++ |++     ++.+ +..|.||||+
T Consensus        40 A~~~~~~eivk~LL~~--GA-diN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~-GAD-----VN~~~~~~g~TpLh~  110 (300)
T PHA02884         40 SIKFHYTDIIDAILKL--GA-DPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRY-GAD-----VNRYAEEAKITPLYI  110 (300)
T ss_pred             HHHcCCHHHHHHHHHC--CC-CccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCC-----cCcccCCCCCCHHHH
Confidence            4567888866666665  33 33444    45899999999999999999999998 999     9986 4689999999


Q ss_pred             HHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHHHHHHHHHhc
Q 048145           76 LATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVI  155 (578)
Q Consensus        76 Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~~~~~~~~~  155 (578)
                      |+..|+.+++++|++.|+        +++.+|..|.||||+|++.++.+++..+.....+..+.+|++++.         
T Consensus       111 Aa~~~~~eivklLL~~GA--------din~kd~~G~TpL~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  173 (300)
T PHA02884        111 SVLHGCLKCLEILLSYGA--------DINIQTNDMVTPIELALMICNNFLAFMICDNEISNFYKHPKKILI---------  173 (300)
T ss_pred             HHHcCCHHHHHHHHHCCC--------CCCCCCCCCCCHHHHHHHhCChhHHHHhcCCcccccccChhhhhc---------
Confidence            999999999999999999        899999999999999999999998877665555667778887653         


Q ss_pred             cCchHHHHHHHhhhhhHHHHHHHHHHHhccc
Q 048145          156 QGCPAIKKIWEKKQIHKKAVALVKMLVEKRI  186 (578)
Q Consensus       156 ~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~  186 (578)
                        +                .++++.|+.++.
T Consensus       174 --n----------------~ei~~~Lish~v  186 (300)
T PHA02884        174 --N----------------FDILKILVSHFI  186 (300)
T ss_pred             --c----------------HHHHHHHHHHHH
Confidence              1                688888888876

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.70  E-value=1.4e-16  Score=134.84  Aligned_cols=73  Identities=19%  Similarity=0.206  Sum_probs=35.0

Q ss_pred             HHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCH
Q 048145           34 IHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETP  113 (578)
Q Consensus        34 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~Tp  113 (578)
                      +.+|+..+....|+.||+...-.     +|.+|.+|.||||-|+.+||.+||+.|+..|+        +.+.+...|+||
T Consensus        67 ~lwaae~nrl~eV~~lL~e~an~-----vNtrD~D~YTpLHRAaYn~h~div~~ll~~gA--------n~~a~T~~GWTP  133 (228)
T KOG0512|consen   67 LLWAAEKNRLTEVQRLLSEKANH-----VNTRDEDEYTPLHRAAYNGHLDIVHELLLSGA--------NKEAKTNEGWTP  133 (228)
T ss_pred             HHHHHhhccHHHHHHHHHhcccc-----ccccccccccHHHHHHhcCchHHHHHHHHccC--------CcccccccCccc
Confidence            34445555555555555442222     44555555555555555555555555555554        444444444444


Q ss_pred             HHHHHH
Q 048145          114 LYRAAS  119 (578)
Q Consensus       114 Lh~A~~  119 (578)
                      ||-||.
T Consensus       134 LhSAck  139 (228)
T KOG0512|consen  134 LHSACK  139 (228)
T ss_pred             hhhhhc
Confidence            444444

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.69  E-value=3.5e-17  Score=149.38  Aligned_cols=134  Identities=21%  Similarity=0.217  Sum_probs=111.3

Q ss_pred             HhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHH
Q 048145           38 AAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRA  117 (578)
Q Consensus        38 a~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A  117 (578)
                      |+.|+.--|+..++...-|     +|.-|..|.+|||+||+.||..+|+.|+.+|+        .+|..|....||||+|
T Consensus         8 cregna~qvrlwld~tehd-----ln~gddhgfsplhwaakegh~aivemll~rga--------rvn~tnmgddtplhla   74 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHD-----LNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGA--------RVNSTNMGDDTPLHLA   74 (448)
T ss_pred             hhcCCeEEEEEEecCcccc-----cccccccCcchhhhhhhcccHHHHHHHHhccc--------ccccccCCCCcchhhh
Confidence            3455554555555554555     89999999999999999999999999999999        8999999999999999


Q ss_pred             HHcCcHHHHHHHHHhccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCC
Q 048145          118 ASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTP  197 (578)
Q Consensus       118 ~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~  197 (578)
                      +.+||-++|+.|++.                                                    .+|+         
T Consensus        75 aahghrdivqkll~~----------------------------------------------------kadv---------   93 (448)
T KOG0195|consen   75 AAHGHRDIVQKLLSR----------------------------------------------------KADV---------   93 (448)
T ss_pred             hhcccHHHHHHHHHH----------------------------------------------------hccc---------
Confidence            999998887777653                                                    2222         


Q ss_pred             CCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHH
Q 048145          198 GVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIE  277 (578)
Q Consensus       198 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~  277 (578)
                                                                          +..+..|+|       |||+||.-|...
T Consensus        94 ----------------------------------------------------navnehgnt-------plhyacfwgydq  114 (448)
T KOG0195|consen   94 ----------------------------------------------------NAVNEHGNT-------PLHYACFWGYDQ  114 (448)
T ss_pred             ----------------------------------------------------chhhccCCC-------chhhhhhhcHHH
Confidence                                                                222346777       999999999999


Q ss_pred             HHHHHHHHCCCcccccccCCChHHHHHH
Q 048145          278 ILEEIRHKYPQTLDNVNEKGQNILHVAI  305 (578)
Q Consensus       278 iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~  305 (578)
                      +.+-|+. +|+.++.+|++|.|||..|-
T Consensus       115 iaedli~-~ga~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen  115 IAEDLIS-CGAAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             HHHHHHh-ccceeeecccCCCCchhhhc
Confidence            9999998 99999999999999999873

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.64  E-value=8.8e-16  Score=123.31  Aligned_cols=81  Identities=31%  Similarity=0.450  Sum_probs=74.5

Q ss_pred             HHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCH
Q 048145           34 IHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETP  113 (578)
Q Consensus        34 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~Tp  113 (578)
                      ||+||+.|+.+++++|++. +.+     ++.    |+||||+|+..|+.+++++|+++|+        +++.+|.+|.||
T Consensus         1 L~~A~~~~~~~~~~~ll~~-~~~-----~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~--------~~~~~~~~g~t~   62 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEK-GAD-----INL----GNTALHYAAENGNLEIVKLLLENGA--------DINSQDKNGNTA   62 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHT-TST-----TTS----SSBHHHHHHHTTTHHHHHHHHHTTT--------CTT-BSTTSSBH
T ss_pred             CHHHHHcCCHHHHHHHHHC-cCC-----CCC----CCCHHHHHHHcCCHHHHHHHHHhcc--------cccccCCCCCCH
Confidence            7999999999999999997 766     555    8999999999999999999999999        899999999999


Q ss_pred             HHHHHHcCcHHHHHHHHHh
Q 048145          114 LYRAASVGKIEALRYFAEQ  132 (578)
Q Consensus       114 Lh~A~~~g~~~iv~~Ll~~  132 (578)
                      ||+|+.+|+.+++++|+++
T Consensus        63 L~~A~~~~~~~~~~~Ll~~   81 (89)
T PF12796_consen   63 LHYAAENGNLEIVKLLLEH   81 (89)
T ss_dssp             HHHHHHTTHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHc
Confidence            9999999999999999986

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.64  E-value=3.1e-15  Score=128.14  Aligned_cols=107  Identities=23%  Similarity=0.370  Sum_probs=100.0

Q ss_pred             CCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCccc
Q 048145           26 RTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVV  105 (578)
Q Consensus        26 ~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~  105 (578)
                      .|.+|.||||.|+..|+.++++.|++. +.+     .+.++..|.||||+|+..++.++++.|++.++        .++.
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~-~~~-----~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~--------~~~~   68 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLEN-GAD-----VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGA--------DVNA   68 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHc-CCC-----CCccCCCCCcHHHHHHHcCCHHHHHHHHHcCC--------Cccc
Confidence            467899999999999999999999998 777     68899999999999999999999999999998        7888


Q ss_pred             CCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHH
Q 048145          106 ENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKM  146 (578)
Q Consensus       106 ~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~  146 (578)
                      .+..|.||+|+|+..++.+++++|++.     ..+..|.||+++|.
T Consensus        69 ~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~  114 (126)
T cd00204          69 RDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAA  114 (126)
T ss_pred             cCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            899999999999999999999999996     56788999999999

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.58  E-value=3.9e-14  Score=121.28  Aligned_cols=125  Identities=26%  Similarity=0.384  Sum_probs=100.6

Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHhccccCCccHHH
Q 048145           64 QTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILS  143 (578)
Q Consensus        64 ~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh  143 (578)
                      .+|.+|.||||+|++.|+.++++.|++.++        +.+..+..|.||||.|+..++.+++++|++            
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li~~~~--------~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~------------   61 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLLENGA--------DVNAKDNDGRTPLHLAAKNGHLEIVKLLLE------------   61 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHHHcCC--------CCCccCCCCCcHHHHHHHcCCHHHHHHHHH------------
Confidence            456789999999999999999999999998        667888889999999998887766666654            


Q ss_pred             HHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhH
Q 048145          144 SKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEW  223 (578)
Q Consensus       144 ~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  223 (578)
                                                              .|..++..                                
T Consensus        62 ----------------------------------------~~~~~~~~--------------------------------   69 (126)
T cd00204          62 ----------------------------------------KGADVNAR--------------------------------   69 (126)
T ss_pred             ----------------------------------------cCCCcccc--------------------------------
Confidence                                                    22211111                                


Q ss_pred             HHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHH
Q 048145          224 VELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHV  303 (578)
Q Consensus       224 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~  303 (578)
                                                   +..+.|       |+|.|++.++.+++++|++ .+.+++..|..|.||+|.
T Consensus        70 -----------------------------~~~~~~-------~l~~a~~~~~~~~~~~L~~-~~~~~~~~~~~~~~~l~~  112 (126)
T cd00204          70 -----------------------------DKDGNT-------PLHLAARNGNLDVVKLLLK-HGADVNARDKDGRTPLHL  112 (126)
T ss_pred             -----------------------------CCCCCC-------HHHHHHHcCcHHHHHHHHH-cCCCCcccCCCCCCHHHH
Confidence                                         123445       9999999999999999998 777888889999999999


Q ss_pred             HHHhCcHHHHHHHH
Q 048145          304 AIMYRQLEIFEIIK  317 (578)
Q Consensus       304 A~~~g~~~iv~~Ll  317 (578)
                      |+..++.+++++|+
T Consensus       113 ~~~~~~~~~~~~Ll  126 (126)
T cd00204         113 AAKNGHLEVVKLLL  126 (126)
T ss_pred             HHhcCCHHHHHHhC
Confidence            99999999988874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.55  E-value=1.1e-14  Score=116.94  Aligned_cols=86  Identities=27%  Similarity=0.417  Sum_probs=73.6

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN   80 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g   80 (578)
                      ||.+|+.+.++.+++.  ....    +. |+||||+|+..|+.+++++|++. +.+     ++.+|.+|+||||+|+..|
T Consensus         4 A~~~~~~~~~~~ll~~--~~~~----~~-~~~~l~~A~~~~~~~~~~~Ll~~-g~~-----~~~~~~~g~t~L~~A~~~~   70 (89)
T PF12796_consen    4 AAQNGNLEILKFLLEK--GADI----NL-GNTALHYAAENGNLEIVKLLLEN-GAD-----INSQDKNGNTALHYAAENG   70 (89)
T ss_dssp             HHHTTTHHHHHHHHHT--TSTT----TS-SSBHHHHHHHTTTHHHHHHHHHT-TTC-----TT-BSTTSSBHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHC--cCCC----CC-CCCHHHHHHHcCCHHHHHHHHHh-ccc-----ccccCCCCCCHHHHHHHcC
Confidence            6789999988888877  2222    12 89999999999999999999999 899     9999999999999999999


Q ss_pred             CHHHHHHHHhhcCCCCCCCCCCcccCC
Q 048145           81 NVDVAKTLVEFSKQSNDADKNPLVVEN  107 (578)
Q Consensus        81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n  107 (578)
                      +.+++++|+++|+        +++.+|
T Consensus        71 ~~~~~~~Ll~~g~--------~~~~~n   89 (89)
T PF12796_consen   71 NLEIVKLLLEHGA--------DVNIRN   89 (89)
T ss_dssp             HHHHHHHHHHTTT---------TTSS-
T ss_pred             CHHHHHHHHHcCC--------CCCCcC
Confidence            9999999999999        777665

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.55  E-value=5.3e-14  Score=146.75  Aligned_cols=209  Identities=19%  Similarity=0.139  Sum_probs=164.9

Q ss_pred             cHHHHHHhcCChHHHHHHHccC--------CCchhhhhhhccCCCCChHHHHHHH---cCCHHHHHHHHhhcCCCCCCCC
Q 048145           32 CAIHVAAAMEDPELIKKFLGRL--------PVEKRLEALMQTDDNGNTAVHALAT---INNVDVAKTLVEFSKQSNDADK  100 (578)
Q Consensus        32 T~Lh~Aa~~g~~~~v~~Ll~~~--------~~~~~~~~l~~~d~~G~TpLh~Aa~---~g~~~iv~~Ll~~g~~~~~~~~  100 (578)
                      .++..|...|..+..+-++...        ..+     ++.+-..|+|.||.|.-   .++.++++.|++.-+       
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~-----~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p-------  170 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWK-----LNERGATGETLLHKALLNLSDGHNELARVLLEIFP-------  170 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhc-----cccccchhhhHHHHHHhcCchhHHHHHHHHHHHhH-------
Confidence            6778888888888887777652        133     66777889999999996   456799999999887       


Q ss_pred             CCccc---C-CCCCCCHHHHHHHcCcHHHHHHHHHh--------------ccc--------------cCCccHHHHHHHH
Q 048145          101 NPLVV---E-NKLGETPLYRAASVGKIEALRYFAEQ--------------VNQ--------------TAAISILSSKMYI  148 (578)
Q Consensus       101 ~~~~~---~-n~~g~TpLh~A~~~g~~~iv~~Ll~~--------------~~~--------------~~g~t~Lh~A~~~  148 (578)
                      ..+|.   . ...|+||||+|+.+.+.++|++|++.              ..|              ..|..||-.|+  
T Consensus       171 ~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAA--  248 (782)
T KOG3676|consen  171 KLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAA--  248 (782)
T ss_pred             HHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHH--
Confidence            33332   1 24599999999999999999999997              111              24678999988  


Q ss_pred             HHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHH
Q 048145          149 AIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMI  228 (578)
Q Consensus       149 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~  228 (578)
                            .-++                .|++++|+++|+|++..                                     
T Consensus       249 ------C~nq----------------~eivrlLl~~gAd~~aq-------------------------------------  269 (782)
T KOG3676|consen  249 ------CTNQ----------------PEIVRLLLAHGADPNAQ-------------------------------------  269 (782)
T ss_pred             ------HcCC----------------HHHHHHHHhcCCCCCcc-------------------------------------
Confidence                  6666                89999999999987654                                     


Q ss_pred             HHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCc--ccccccCCChHHHHHHH
Q 048145          229 QVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQT--LDNVNEKGQNILHVAIM  306 (578)
Q Consensus       229 ~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~--i~~~d~~G~t~Lh~A~~  306 (578)
                                              |.+|+|       .||..+.+-..++.+++|+ +|++  ...+|++|-|||-+|++
T Consensus       270 ------------------------DS~GNT-------VLH~lVi~~~~~My~~~L~-~ga~~l~~v~N~qgLTPLtLAak  317 (782)
T KOG3676|consen  270 ------------------------DSNGNT-------VLHMLVIHFVTEMYDLALE-LGANALEHVRNNQGLTPLTLAAK  317 (782)
T ss_pred             ------------------------ccCCCh-------HHHHHHHHHHHHHHHHHHh-cCCCccccccccCCCChHHHHHH
Confidence                                    457777       9999999999999999998 8888  88999999999999999


Q ss_pred             hCcHHHHHHHHHh-h------ch--hhhhhhhcccC--CCCchhhHHHhc
Q 048145          307 YRQLEIFEIIKEK-M------QL--SLAEWALKIDN--EGYTILHQVADM  345 (578)
Q Consensus       307 ~g~~~iv~~Ll~~-~------~~--~~~~~~~~~d~--~G~T~LhlA~~~  345 (578)
                      -|+.++++.+++. .      |.  +..-+++..|.  +-+++|.+.+..
T Consensus       318 lGk~emf~~ile~~k~~~W~YGpvtsslYpL~~iDT~~n~~SvLeivvyg  367 (782)
T KOG3676|consen  318 LGKKEMFQHILERRKFTDWAYGPVTSSLYPLNSIDTIGNENSVLEIVVYG  367 (782)
T ss_pred             hhhHHHHHHHHHhhcccceeecccccccccchhcccccchhhhhhhhhcC
Confidence            9999999999954 1      10  12335566664  457788888765

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.54  E-value=1.9e-14  Score=108.82  Aligned_cols=97  Identities=12%  Similarity=0.155  Sum_probs=83.8

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN   80 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g   80 (578)
                      +.++|+++.|+.+..+  ..+++..  ..|+||||+||.+|+.+++++|+.. |++     ++.+|+.|-|||--|+..|
T Consensus         9 ~vkNG~~DeVk~~v~~--g~nVn~~--~ggR~plhyAAD~GQl~ilefli~i-GA~-----i~~kDKygITPLLsAvwEG   78 (117)
T KOG4214|consen    9 NVKNGEIDEVKQSVNE--GLNVNEI--YGGRTPLHYAADYGQLSILEFLISI-GAN-----IQDKDKYGITPLLSAVWEG   78 (117)
T ss_pred             hhccCcHHHHHHHHHc--cccHHHH--hCCcccchHhhhcchHHHHHHHHHh-ccc-----cCCccccCCcHHHHHHHHh
Confidence            3578999999999988  3333322  3899999999999999999999998 999     9999999999999999999


Q ss_pred             CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHH
Q 048145           81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLY  115 (578)
Q Consensus        81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh  115 (578)
                      |.++|++|+++|+        +-..+..+|.+.+-
T Consensus        79 H~~cVklLL~~GA--------drt~~~PdG~~~~e  105 (117)
T KOG4214|consen   79 HRDCVKLLLQNGA--------DRTIHAPDGTALIE  105 (117)
T ss_pred             hHHHHHHHHHcCc--------ccceeCCCchhHHh
Confidence            9999999999999        66667777776553

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.48  E-value=2.4e-13  Score=102.86  Aligned_cols=98  Identities=13%  Similarity=0.274  Sum_probs=85.5

Q ss_pred             CcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCC
Q 048145           31 ECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLG  110 (578)
Q Consensus        31 ~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g  110 (578)
                      +--..+++++|..+-|+..+.. +.+     +|..- .|+||||+||..|+.+++++|+..|+        +++.+|+.|
T Consensus         3 d~~~~W~vkNG~~DeVk~~v~~-g~n-----Vn~~~-ggR~plhyAAD~GQl~ilefli~iGA--------~i~~kDKyg   67 (117)
T KOG4214|consen    3 DMSVAWNVKNGEIDEVKQSVNE-GLN-----VNEIY-GGRTPLHYAADYGQLSILEFLISIGA--------NIQDKDKYG   67 (117)
T ss_pred             chhHhhhhccCcHHHHHHHHHc-ccc-----HHHHh-CCcccchHhhhcchHHHHHHHHHhcc--------ccCCccccC
Confidence            3456889999999999999887 666     66554 89999999999999999999999999        999999999


Q ss_pred             CCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHH
Q 048145          111 ETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILS  143 (578)
Q Consensus       111 ~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh  143 (578)
                      .|||.-|+..||.++|++|++.     ....+|.+.+.
T Consensus        68 ITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~e  105 (117)
T KOG4214|consen   68 ITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGTALIE  105 (117)
T ss_pred             CcHHHHHHHHhhHHHHHHHHHcCcccceeCCCchhHHh
Confidence            9999999999999999999998     44456665554

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.43  E-value=2.6e-13  Score=97.19  Aligned_cols=54  Identities=30%  Similarity=0.484  Sum_probs=46.6

Q ss_pred             CCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHH
Q 048145           30 GECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLV   89 (578)
Q Consensus        30 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll   89 (578)
                      |+||||+|++.|+.+++++|+++ +.+     ++.+|.+|+||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~-~~d-----in~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEH-GAD-----INAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHT-TSG-----TT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHC-CCC-----CCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            78999999999999999999999 999     9999999999999999999999999996

...

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.43  E-value=2.5e-13  Score=97.27  Aligned_cols=54  Identities=30%  Similarity=0.500  Sum_probs=46.4

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHH
Q 048145           69 GNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFA  130 (578)
Q Consensus        69 G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll  130 (578)
                      |+||||+||+.|+.+++++|+++|.        +++.+|.+|.||||+|+.+|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~--------din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGA--------DINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTS--------GTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCC--------CCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            7899999999999999999999998        89999999999999999999999999986

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.40  E-value=2e-13  Score=98.31  Aligned_cols=56  Identities=21%  Similarity=0.277  Sum_probs=32.7

Q ss_pred             HHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHH
Q 048145          282 IRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQV  342 (578)
Q Consensus       282 Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA  342 (578)
                      ||+..+.+++..|..|+||||+|+++|+.+++++|+     ..+.+++.+|++|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll-----~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLL-----QNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHH-----HCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHH-----HCcCCCCCCcCCCCCHHHhC
Confidence            566556899999999999999999999999999999     56778999999999999997

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.40  E-value=1.3e-12  Score=119.74  Aligned_cols=114  Identities=20%  Similarity=0.199  Sum_probs=103.0

Q ss_pred             cccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhcc-CCCCChHHHHHHHcC
Q 048145            2 ALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQT-DDNGNTAVHALATIN   80 (578)
Q Consensus         2 a~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~-d~~G~TpLh~Aa~~g   80 (578)
                      +-+||.+.+..+|..   -...+.+|.+|+|+|..|+..|+.++|+.|++. |+|     +|.. +..+.||||+||-+|
T Consensus        20 i~Kndt~~a~~LLs~---vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~-gaD-----vN~~qhg~~YTpLmFAALSG   90 (396)
T KOG1710|consen   20 IDKNDTEAALALLST---VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLEL-GAD-----VNDKQHGTLYTPLMFAALSG   90 (396)
T ss_pred             HccCcHHHHHHHHHH---hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHh-CCC-----cCcccccccccHHHHHHHcC
Confidence            457888888888877   445688999999999999999999999999999 999     8865 678999999999999


Q ss_pred             CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh
Q 048145           81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ  132 (578)
Q Consensus        81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~  132 (578)
                      +.++.++|++.|+        .....|.-|+|+-.+|+.-||.++|..+-.+
T Consensus        91 n~dvcrllldaGa--------~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   91 NQDVCRLLLDAGA--------RMYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             CchHHHHHHhccC--------ccccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            9999999999999        7889999999999999999999999887554

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.39  E-value=6.1e-13  Score=131.16  Aligned_cols=115  Identities=23%  Similarity=0.200  Sum_probs=94.8

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN   80 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g   80 (578)
                      |+..|.++.|+.++.+   -.....-+..|-|+||-|+-.||.+||++|++. |++     +|..|.+||||||+||..+
T Consensus       557 aaLeGEldlVq~~i~e---v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~-gan-----VNa~DSdGWTPLHCAASCN  627 (752)
T KOG0515|consen  557 AALEGELDLVQRIIYE---VTDPSQPNDEGITALHNAICAGHYEIVKFLIEF-GAN-----VNAADSDGWTPLHCAASCN  627 (752)
T ss_pred             hhhcchHHHHHHHHHh---hcCCCCCCccchhHHhhhhhcchhHHHHHHHhc-CCc-----ccCccCCCCchhhhhhhcC
Confidence            6788999988888887   334466778899999999999999999999998 999     9999999999999999999


Q ss_pred             CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHH--HcCcHHHHHHHHH
Q 048145           81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAA--SVGKIEALRYFAE  131 (578)
Q Consensus        81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~--~~g~~~iv~~Ll~  131 (578)
                      ++.|++.|++.|+       ..+-..-.+++||..-+-  +.|..++.++|..
T Consensus       628 nv~~ckqLVe~Ga-------avfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  628 NVPMCKQLVESGA-------AVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             chHHHHHHHhccc-------eEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            9999999999998       344455567888876653  3577778888765

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.39  E-value=3.1e-13  Score=97.31  Aligned_cols=56  Identities=29%  Similarity=0.380  Sum_probs=29.8

Q ss_pred             HHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHH
Q 048145           49 FLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRA  117 (578)
Q Consensus        49 Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A  117 (578)
                      |+++.+.+     ++.+|..|+||||+||..|+.+++++|++.|+        +++.+|..|+||||+|
T Consensus         1 LL~~~~~~-----~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~--------d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPAD-----VNAQDKYGNTPLHWAARYGHSEVVRLLLQNGA--------DPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T-------TT---TTS--HHHHHHHHT-HHHHHHHHHCT----------TT---TTS--HHHH-
T ss_pred             CCccCcCC-----CcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcC--------CCCCCcCCCCCHHHhC
Confidence            34552366     88888888888888888888888888888787        8888888888888886

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.38  E-value=3.8e-12  Score=121.29  Aligned_cols=128  Identities=27%  Similarity=0.419  Sum_probs=113.5

Q ss_pred             hccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCC-----HHHHHHHHhhcCCCCC
Q 048145           23 LGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINN-----VDVAKTLVEFSKQSND   97 (578)
Q Consensus        23 ~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~-----~~iv~~Ll~~g~~~~~   97 (578)
                      ....+..+.+++|.|+..+..++++.++.. +.+     ++.+|..|.||||+|+..|+     .++++.|++.|+.   
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-----~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~---  136 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLAS-GAD-----VNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGAD---  136 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHc-CCC-----cccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCC---
Confidence            344556689999999999999999999998 999     99999999999999999999     9999999999981   


Q ss_pred             CCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhH
Q 048145           98 ADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHK  172 (578)
Q Consensus        98 ~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~  172 (578)
                        .+..+.+|..|.||||+|+..|+.++++.|++.     ..+..|.|+++.|+        ..|+              
T Consensus       137 --~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~--------~~~~--------------  192 (235)
T COG0666         137 --LDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAA--------KNGR--------------  192 (235)
T ss_pred             --CCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhc--------ccch--------------
Confidence              015667799999999999999999999999998     55789999999999        7777              


Q ss_pred             HHHHHHHHHHhcc
Q 048145          173 KAVALVKMLVEKR  185 (578)
Q Consensus       173 ~~~~~v~~Ll~~g  185 (578)
                        .++++.+++.+
T Consensus       193 --~~~~~~l~~~~  203 (235)
T COG0666         193 --IELVKLLLDKG  203 (235)
T ss_pred             --HHHHHHHHhcC
Confidence              78888888765

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.32  E-value=5.6e-12  Score=120.15  Aligned_cols=113  Identities=26%  Similarity=0.327  Sum_probs=99.2

Q ss_pred             ccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCC-----hHHHHHHHccCCC---chhhhhhhccCCCCChHHH
Q 048145            3 LKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMED-----PELIKKFLGRLPV---EKRLEALMQTDDNGNTAVH   74 (578)
Q Consensus         3 ~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~-----~~~v~~Ll~~~~~---~~~~~~l~~~d~~G~TpLh   74 (578)
                      ..|+.+.+..++..  .... +..+..|.||||+|+..|+     .++++.|++. ++   .     .+.+|.+|+||||
T Consensus        82 ~~~~~~~~~~l~~~--~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~-g~~~~~-----~~~~~~~g~tpl~  152 (235)
T COG0666          82 SKGDDKIVKLLLAS--GADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEA-GADLDV-----NNLRDEDGNTPLH  152 (235)
T ss_pred             HcCcHHHHHHHHHc--CCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHc-CCCCCC-----ccccCCCCCchhH
Confidence            44666655455554  3334 8899999999999999999     9999999999 66   5     7777999999999


Q ss_pred             HHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh
Q 048145           75 ALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ  132 (578)
Q Consensus        75 ~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~  132 (578)
                      +|+..|+.+++++|++.|+        +++.+|..|.|+++.|+..|+.++++.+++.
T Consensus       153 ~A~~~~~~~~~~~ll~~~~--------~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~  202 (235)
T COG0666         153 WAALNGDADIVELLLEAGA--------DPNSRNSYGVTALDPAAKNGRIELVKLLLDK  202 (235)
T ss_pred             HHHHcCchHHHHHHHhcCC--------CCcccccCCCcchhhhcccchHHHHHHHHhc
Confidence            9999999999999999999        8899999999999999999999999999884

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.31  E-value=5.2e-12  Score=138.30  Aligned_cols=100  Identities=21%  Similarity=0.209  Sum_probs=90.4

Q ss_pred             HHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCC
Q 048145           33 AIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGET  112 (578)
Q Consensus        33 ~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~T  112 (578)
                      .||.||..|+.+.|+.|++. +++     ++.+|.+|+||||+||..|+.+++++|+++|+        +++.+|..|.|
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~-Gad-----in~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Ga--------dvn~~d~~G~T  150 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTG-GAD-----PNCRDYDGRTPLHIACANGHVQVVRVLLEFGA--------DPTLLDKDGKT  150 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHC-CCC-----CCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCC--------CCCCCCCCCCC
Confidence            58899999999999999998 999     99999999999999999999999999999999        89999999999


Q ss_pred             HHHHHHHcCcHHHHHHHHHh------------ccccCCccHHHHHH
Q 048145          113 PLYRAASVGKIEALRYFAEQ------------VNQTAAISILSSKM  146 (578)
Q Consensus       113 pLh~A~~~g~~~iv~~Ll~~------------~~~~~g~t~Lh~A~  146 (578)
                      |||+|+.+|+.+++++|+++            ..+..|.+|+..+.
T Consensus       151 pLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        151 PLELAEENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHHCCcHHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            99999999999999999986            23455666655443

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.25  E-value=1.9e-11  Score=120.84  Aligned_cols=98  Identities=21%  Similarity=0.267  Sum_probs=87.5

Q ss_pred             HHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCC
Q 048145           33 AIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGET  112 (578)
Q Consensus        33 ~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~T  112 (578)
                      .|.-|+..|..++|+.++.. -.|     +...|..|-||||-|+..||.+||++||+.|+        ++|..|.+|+|
T Consensus       553 LLLDaaLeGEldlVq~~i~e-v~D-----pSqpNdEGITaLHNAiCaghyeIVkFLi~~ga--------nVNa~DSdGWT  618 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYE-VTD-----PSQPNDEGITALHNAICAGHYEIVKFLIEFGA--------NVNAADSDGWT  618 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHh-hcC-----CCCCCccchhHHhhhhhcchhHHHHHHHhcCC--------cccCccCCCCc
Confidence            46679999999999999987 455     78889999999999999999999999999999        99999999999


Q ss_pred             HHHHHHHcCcHHHHHHHHHh------ccccCCccHHHH
Q 048145          113 PLYRAASVGKIEALRYFAEQ------VNQTAAISILSS  144 (578)
Q Consensus       113 pLh~A~~~g~~~iv~~Ll~~------~~~~~g~t~Lh~  144 (578)
                      |||+|+..++..+++.|++.      ..-.++.|+..-
T Consensus       619 PLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eK  656 (752)
T KOG0515|consen  619 PLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEK  656 (752)
T ss_pred             hhhhhhhcCchHHHHHHHhccceEEeeecccccchhhh
Confidence            99999999999999999998      234667776543

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.15  E-value=7e-11  Score=129.50  Aligned_cols=108  Identities=17%  Similarity=0.220  Sum_probs=88.3

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN   80 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g   80 (578)
                      ||..|+.+.+..+++.   +...+..|.+|+||||+|+..|+.++|++|++. +++     ++.+|.+|.||||+|+..|
T Consensus        89 aa~~G~~~~vk~LL~~---Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~-Gad-----vn~~d~~G~TpLh~A~~~g  159 (664)
T PTZ00322         89 LAASGDAVGARILLTG---GADPNCRDYDGRTPLHIACANGHVQVVRVLLEF-GAD-----PTLLDKDGKTPLELAEENG  159 (664)
T ss_pred             HHHcCCHHHHHHHHHC---CCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHC-CCC-----CCCCCCCCCCHHHHHHHCC
Confidence            4678999987777766   345677899999999999999999999999999 999     9999999999999999999


Q ss_pred             CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHH
Q 048145           81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAA  118 (578)
Q Consensus        81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~  118 (578)
                      +.+++++|++++......+ .+.+..+..|.+|+..+.
T Consensus       160 ~~~iv~~Ll~~~~~~~~~g-a~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        160 FREVVQLLSRHSQCHFELG-ANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             cHHHHHHHHhCCCcccccC-CCCCccccCCCCccchhh
Confidence            9999999999822110000 166677777888876554

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.07  E-value=8.9e-10  Score=101.41  Aligned_cols=117  Identities=21%  Similarity=0.244  Sum_probs=104.1

Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHh
Q 048145          109 LGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVE  183 (578)
Q Consensus       109 ~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~  183 (578)
                      .-+.||..++..|..+-...|++.     ..|.+|+|+|..|+        ..|+                ++++++|++
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAa--------ykGn----------------l~~v~lll~   66 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAA--------YKGN----------------LTLVELLLE   66 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHH--------hcCc----------------HHHHHHHHH
Confidence            356899999999999999999987     67899999999999        7788                999999999


Q ss_pred             ccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccc
Q 048145          184 KRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRT  263 (578)
Q Consensus       184 ~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g  263 (578)
                      .|+|++....                                                                   -.+
T Consensus        67 ~gaDvN~~qh-------------------------------------------------------------------g~~   79 (396)
T KOG1710|consen   67 LGADVNDKQH-------------------------------------------------------------------GTL   79 (396)
T ss_pred             hCCCcCcccc-------------------------------------------------------------------ccc
Confidence            9999876521                                                                   124


Q ss_pred             hhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHH
Q 048145          264 MRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIK  317 (578)
Q Consensus       264 ~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll  317 (578)
                      +||||+||..|+.++.+.|++ .|+....+|+=|+|+-.+|+.-|+.++|..+-
T Consensus        80 YTpLmFAALSGn~dvcrllld-aGa~~~~vNsvgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen   80 YTPLMFAALSGNQDVCRLLLD-AGARMYLVNSVGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             ccHHHHHHHcCCchHHHHHHh-ccCccccccchhhhHHHHHHHhcchHHHHHHh
Confidence            559999999999999999998 89999999999999999999999999998875

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.92  E-value=8.5e-10  Score=114.75  Aligned_cols=100  Identities=20%  Similarity=0.354  Sum_probs=91.5

Q ss_pred             CChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCC-CCChHHHHHHHcCCHH
Q 048145            5 GDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDD-NGNTAVHALATINNVD   83 (578)
Q Consensus         5 G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~-~G~TpLh~Aa~~g~~~   83 (578)
                      |....++.++.+ +.....+++|..|+|+||+|+..|..+++++|+++ |++     +..+|. .|+||||-|+..|++|
T Consensus        28 s~~Nqlk~F~~k-~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqh-Gid-----v~vqD~ESG~taLHRaiyyG~id  100 (1267)
T KOG0783|consen   28 SEPNQLKGFSEK-SCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQH-GID-----VFVQDEESGYTALHRAIYYGNID  100 (1267)
T ss_pred             CChhHHHHHHHH-hhhhhhhHHHhhccceeeeeeccchhHHHHHHHhc-Cce-----eeeccccccchHhhHhhhhchHH
Confidence            344457778888 66677899999999999999999999999999999 999     999986 7999999999999999


Q ss_pred             HHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHH
Q 048145           84 VAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAAS  119 (578)
Q Consensus        84 iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~  119 (578)
                      ++.+|+.+|.        .+.++|++|..||..-++
T Consensus       101 ca~lLL~~g~--------SL~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  101 CASLLLSKGR--------SLRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             HHHHHHhcCC--------ceEEecccCCCHHHHHhh
Confidence            9999999999        899999999999998887

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.89  E-value=3.6e-09  Score=105.61  Aligned_cols=117  Identities=26%  Similarity=0.290  Sum_probs=100.9

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN   80 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g   80 (578)
                      |+.++|+-++++....  ++ .+-..+.+..|.||+|+..|+.++|++++++.+    .++++..|..|+|+||-|+..+
T Consensus       873 av~~~D~~klqE~h~~--gg-~ll~~~~~~~sllh~a~~tg~~eivkyildh~p----~elld~~de~get~lhkaa~~~  945 (1004)
T KOG0782|consen  873 AVLSSDLMKLQETHLN--GG-SLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGP----SELLDMADETGETALHKAACQR  945 (1004)
T ss_pred             HHHhccHHHHHHHHhc--CC-ceEeeCcchhhHHHHHHhcCChHHHHHHHhcCC----HHHHHHHhhhhhHHHHHHHHhc
Confidence            3556777777776666  33 345668888999999999999999999999944    3578899999999999999999


Q ss_pred             CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh
Q 048145           81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ  132 (578)
Q Consensus        81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~  132 (578)
                      +..++++|++.|+        .+...|..|.||-..|-+.|+.+...+|-..
T Consensus       946 ~r~vc~~lvdaga--------sl~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  946 NRAVCQLLVDAGA--------SLRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             chHHHHHHHhcch--------hheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            9999999999999        8999999999999999999999999888654

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.77  E-value=8.1e-09  Score=101.33  Aligned_cols=93  Identities=24%  Similarity=0.277  Sum_probs=86.3

Q ss_pred             CCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccC
Q 048145           27 TFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVE  106 (578)
Q Consensus        27 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~  106 (578)
                      +.++.-++.+||+.|++..++.+.-. +.|     ++.+|.+.+|+||.||..|+++++++|++...       .+++.+
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~-g~D-----~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~k-------v~~~~k  569 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQ-GMD-----LETKDYDDRTALHVAAAEGHVEVVKFLLNACK-------VDPDPK  569 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHh-ccc-----ccccccccchhheeecccCceeHHHHHHHHHc-------CCCChh
Confidence            34556789999999999999988877 888     99999999999999999999999999999988       799999


Q ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHHh
Q 048145          107 NKLGETPLYRAASVGKIEALRYFAEQ  132 (578)
Q Consensus       107 n~~g~TpLh~A~~~g~~~iv~~Ll~~  132 (578)
                      |..|+|||.-|...+|.+++++|-+.
T Consensus       570 DRw~rtPlDdA~~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  570 DRWGRTPLDDAKHFKHKEVVKLLEEA  595 (622)
T ss_pred             hccCCCcchHhHhcCcHHHHHHHHHH
Confidence            99999999999999999999999886

>PF13606 Ank_3: Ankyrin repeat

Probab=98.67  E-value=2.3e-08  Score=61.18  Aligned_cols=26  Identities=38%  Similarity=0.607  Sum_probs=24.7

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhhcC
Q 048145           68 NGNTAVHALATINNVDVAKTLVEFSK   93 (578)
Q Consensus        68 ~G~TpLh~Aa~~g~~~iv~~Ll~~g~   93 (578)
                      +|+||||+||+.|+.|++++|+++|+
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~ga   26 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGA   26 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence            58999999999999999999999998

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.63  E-value=7.3e-08  Score=96.54  Aligned_cols=88  Identities=20%  Similarity=0.314  Sum_probs=77.3

Q ss_pred             cHHHHHHhcCChHHHHHHHcc-CCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCC
Q 048145           32 CAIHVAAAMEDPELIKKFLGR-LPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLG  110 (578)
Q Consensus        32 T~Lh~Aa~~g~~~~v~~Ll~~-~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g  110 (578)
                      -|||.++...+.+-.+..+.. ....     ++.+|..|+||||+|++.||.+.++.|+..|+        ++..+|++|
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~-----id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~A--------dv~~kN~~g   88 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLV-----IDRRDPPGRTPLHLAVRLGHVEAARILLSAGA--------DVSIKNNEG   88 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhce-----eccccCCCCccHHHHHHhcCHHHHHHHHhcCC--------Ccccccccc
Confidence            359999998887766654433 3445     88999999999999999999999999999999        899999999


Q ss_pred             CCHHHHHHHcCcHHHHHHHHHh
Q 048145          111 ETPLYRAASVGKIEALRYFAEQ  132 (578)
Q Consensus       111 ~TpLh~A~~~g~~~iv~~Ll~~  132 (578)
                      .+|||.|+..|+.+++..++.+
T Consensus        89 Ws~L~EAv~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   89 WSPLHEAVSTGNEQIITEVLRH  110 (560)
T ss_pred             ccHHHHHHHcCCHHHHHHHHHH
Confidence            9999999999999999988876

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.63  E-value=2.5e-08  Score=97.96  Aligned_cols=85  Identities=27%  Similarity=0.297  Sum_probs=79.0

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN   80 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g   80 (578)
                      ||..||+..+++++.+   ...++..|.+.+|+||+||..|+++++++|++..+.+     ++.+|..|+|||.-|-.-+
T Consensus       513 aa~~GD~~alrRf~l~---g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~-----~~~kDRw~rtPlDdA~~F~  584 (622)
T KOG0506|consen  513 AAKNGDLSALRRFALQ---GMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVD-----PDPKDRWGRTPLDDAKHFK  584 (622)
T ss_pred             hhhcCCHHHHHHHHHh---cccccccccccchhheeecccCceeHHHHHHHHHcCC-----CChhhccCCCcchHhHhcC
Confidence            7899999999999998   5567899999999999999999999999999998888     9999999999999999999


Q ss_pred             CHHHHHHHHhhcC
Q 048145           81 NVDVAKTLVEFSK   93 (578)
Q Consensus        81 ~~~iv~~Ll~~g~   93 (578)
                      |.+++++|-+.-.
T Consensus       585 h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  585 HKEVVKLLEEAQY  597 (622)
T ss_pred             cHHHHHHHHHHhc
Confidence            9999999987643

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.61  E-value=4.9e-08  Score=61.60  Aligned_cols=33  Identities=24%  Similarity=0.402  Sum_probs=29.9

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCC
Q 048145           68 NGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENK  108 (578)
Q Consensus        68 ~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~  108 (578)
                      +|+||||+|+..|+.+++++|+++|+        +++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga--------~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGA--------DINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTS--------CTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcC--------CCCCCCC
Confidence            58999999999999999999999999        7777764

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.56  E-value=2e-07  Score=92.09  Aligned_cols=95  Identities=19%  Similarity=0.183  Sum_probs=85.5

Q ss_pred             ccCCCCCCc------HHHHHHhcCChHHHHHHHccCCCchhhhhhhccC-CCCChHHHHHHHcCCHHHHHHHHhhcCCCC
Q 048145           24 GYRTFNGEC------AIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTD-DNGNTAVHALATINNVDVAKTLVEFSKQSN   96 (578)
Q Consensus        24 ~~~~~~g~T------~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d-~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~   96 (578)
                      ..+|.+|-|      -||-.++.|+.+..-.||.. |++     .|..+ ..|+||||.|++.|+..-+++|+-+|+   
T Consensus       121 ~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~l-GA~-----~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGA---  191 (669)
T KOG0818|consen  121 PCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSL-GAQ-----ANFFHPEKGNTPLHVAAKAGQILQAELLAVYGA---  191 (669)
T ss_pred             CCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHc-ccc-----cCCCCcccCCchhHHHHhccchhhhhHHhhccC---
Confidence            445555544      59999999999999999988 999     88876 479999999999999999999999999   


Q ss_pred             CCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh
Q 048145           97 DADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ  132 (578)
Q Consensus        97 ~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~  132 (578)
                           |++..|.+|.||+.+|-..||.++.+-|++.
T Consensus       192 -----D~~a~d~~GmtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  192 -----DPGAQDSSGMTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             -----CCCCCCCCCCcHHHHHHhcCchHHHHHHHHH
Confidence                 9999999999999999999999999998886

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.51  E-value=6.5e-08  Score=101.10  Aligned_cols=80  Identities=21%  Similarity=0.250  Sum_probs=74.6

Q ss_pred             hhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCC-CCCCHHHHHHHcCcHHHHHHHHHh-----c
Q 048145           60 EALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENK-LGETPLYRAASVGKIEALRYFAEQ-----V  133 (578)
Q Consensus        60 ~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~-~g~TpLh~A~~~g~~~iv~~Ll~~-----~  133 (578)
                      ++.+++|..|+|+||+|+..|..+++++|+++|.        ++..+|. .|.||||.|+.+|+.|++-.|+.+     +
T Consensus        43 n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGi--------dv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i  114 (1267)
T KOG0783|consen   43 NLANIKDRYGRTALHIAVSENKNSFLRWLLQHGI--------DVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRI  114 (1267)
T ss_pred             hhhhHHHhhccceeeeeeccchhHHHHHHHhcCc--------eeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEE
Confidence            4589999999999999999999999999999999        8888886 499999999999999999999998     7


Q ss_pred             cccCCccHHHHHHH
Q 048145          134 NQTAAISILSSKMY  147 (578)
Q Consensus       134 ~~~~g~t~Lh~A~~  147 (578)
                      .|++|.+||..-+.
T Consensus       115 ~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  115 KDKEGLSPLQFLSR  128 (1267)
T ss_pred             ecccCCCHHHHHhh
Confidence            99999999998775

>PF13606 Ank_3: Ankyrin repeat

Probab=98.43  E-value=2e-07  Score=56.96  Aligned_cols=27  Identities=30%  Similarity=0.517  Sum_probs=25.7

Q ss_pred             CCCcHHHHHHhcCChHHHHHHHccCCCc
Q 048145           29 NGECAIHVAAAMEDPELIKKFLGRLPVE   56 (578)
Q Consensus        29 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~   56 (578)
                      +|+||||+||+.|+.++|++|+++ |++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~-gad   27 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEH-GAD   27 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHc-CCC
Confidence            589999999999999999999999 887

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.43  E-value=2.7e-07  Score=58.15  Aligned_cols=33  Identities=24%  Similarity=0.514  Sum_probs=30.6

Q ss_pred             CCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCC
Q 048145           29 NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDD   67 (578)
Q Consensus        29 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~   67 (578)
                      +|+||||+|+..|+.+++++|+++ +++     ++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~-ga~-----~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKH-GAD-----INARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHT-TSC-----TTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHC-cCC-----CCCCCC
Confidence            589999999999999999999998 999     888874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.42  E-value=5.7e-07  Score=90.70  Aligned_cols=95  Identities=22%  Similarity=0.256  Sum_probs=79.2

Q ss_pred             cHHHHHHhcCChHHHHHHHccCCCchhhhhh-hccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCC
Q 048145           32 CAIHVAAAMEDPELIKKFLGRLPVEKRLEAL-MQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLG  110 (578)
Q Consensus        32 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l-~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g  110 (578)
                      .-|.-|+...+...+-.||.+ |..  .++. ...+.+|.||||+||+.|++.+.++|+-+|.        |+..+|..|
T Consensus       626 qqLl~A~~~~Dl~t~~lLLAh-g~~--~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~--------dv~~rda~g  694 (749)
T KOG0705|consen  626 QQLLRAVAAEDLQTAILLLAH-GSR--EEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGV--------DVMARDAHG  694 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc-cCc--hhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCc--------cceecccCC
Confidence            346778888889999999988 543  1112 2336688999999999999999999999999        999999999


Q ss_pred             CCHHHHHHHcCcHHHHHHHHHh-ccccC
Q 048145          111 ETPLYRAASVGKIEALRYFAEQ-VNQTA  137 (578)
Q Consensus       111 ~TpLh~A~~~g~~~iv~~Ll~~-~~~~~  137 (578)
                      +|+|.||-+.|.-|++..|+.+ +.+..
T Consensus       695 ~t~l~yar~a~sqec~d~llq~gcp~e~  722 (749)
T KOG0705|consen  695 RTALFYARQAGSQECIDVLLQYGCPDEC  722 (749)
T ss_pred             chhhhhHhhcccHHHHHHHHHcCCCccc
Confidence            9999999999999999999998 44443

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.36  E-value=8.6e-07  Score=89.04  Aligned_cols=82  Identities=13%  Similarity=0.232  Sum_probs=70.6

Q ss_pred             CChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHH
Q 048145            5 GDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDV   84 (578)
Q Consensus         5 G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~i   84 (578)
                      .+++.+.+.+.. .-...+..+|..|+||||+|+..|+.+.++.|+.. +++     +..+|+.|++|||.|+..|+.++
T Consensus        31 ~~~~sl~~el~~-~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a-~Ad-----v~~kN~~gWs~L~EAv~~g~~q~  103 (560)
T KOG0522|consen   31 TDSDSLEQELLA-KVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSA-GAD-----VSIKNNEGWSPLHEAVSTGNEQI  103 (560)
T ss_pred             cchhhHHHHHhh-hhhceeccccCCCCccHHHHHHhcCHHHHHHHHhc-CCC-----ccccccccccHHHHHHHcCCHHH
Confidence            345555565555 24456788999999999999999999999999998 999     99999999999999999999999


Q ss_pred             HHHHHhhcC
Q 048145           85 AKTLVEFSK   93 (578)
Q Consensus        85 v~~Ll~~g~   93 (578)
                      +..++.+-.
T Consensus       104 i~~vlr~~~  112 (560)
T KOG0522|consen  104 ITEVLRHLK  112 (560)
T ss_pred             HHHHHHHhH
Confidence            999988765

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.35  E-value=1.2e-05  Score=85.82  Aligned_cols=118  Identities=19%  Similarity=0.153  Sum_probs=94.9

Q ss_pred             CcccCChHHHHHHHhcCCch--hhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHH
Q 048145            1 MALKGDRQGFLRYFAQQTDE--ELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALAT   78 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~--~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~   78 (578)
                      |++.||...+.+.+++ ...  ...+.+|.-|+++||+|..+.+.+++++|+++ +..     .       -.+|-+|++
T Consensus        32 a~E~gd~~~V~k~l~~-~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~-~~~-----~-------gdALL~aI~   97 (822)
T KOG3609|consen   32 AHENGDVPLVAKALEY-KAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDT-SSE-----E-------GDALLLAIA   97 (822)
T ss_pred             HHHcCChHHHHHHHHh-ccccccchhccChHhhhceecccccccHHHHHHHhcC-ccc-----c-------chHHHHHHH
Confidence            5788999999999998 433  45689999999999999999999999999998 644     2       348999999


Q ss_pred             cCCHHHHHHHHhhcCCCCCCC--CCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh
Q 048145           79 INNVDVAKTLVEFSKQSNDAD--KNPLVVENKLGETPLYRAASVGKIEALRYFAEQ  132 (578)
Q Consensus        79 ~g~~~iv~~Ll~~g~~~~~~~--~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~  132 (578)
                      .|.++.|+.++.+-....+..  .+.-...-..+.|||.+||..++.|++++|+.+
T Consensus        98 ~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~k  153 (822)
T KOG3609|consen   98 VGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTR  153 (822)
T ss_pred             HHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHc
Confidence            999999999998765222111  111223335578999999999999999999997

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.34  E-value=1.1e-06  Score=88.19  Aligned_cols=101  Identities=15%  Similarity=0.127  Sum_probs=83.6

Q ss_pred             HHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCH
Q 048145           34 IHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETP  113 (578)
Q Consensus        34 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~Tp  113 (578)
                      +.-|+..++.--.+..-.. |.+     +-.++.+..|-||+|+..|+-|+|++++++|+.      +.+++.++.|+|+
T Consensus       870 il~av~~~D~~klqE~h~~-gg~-----ll~~~~~~~sllh~a~~tg~~eivkyildh~p~------elld~~de~get~  937 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLN-GGS-----LLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPS------ELLDMADETGETA  937 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhc-CCc-----eEeeCcchhhHHHHHHhcCChHHHHHHHhcCCH------HHHHHHhhhhhHH
Confidence            3445555554333333334 666     888999999999999999999999999999982      4788999999999


Q ss_pred             HHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHH
Q 048145          114 LYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKM  146 (578)
Q Consensus       114 Lh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~  146 (578)
                      ||-|+-.++-.+.++|++.     ..|..|.||-..|-
T Consensus       938 lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraq  975 (1004)
T KOG0782|consen  938 LHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQ  975 (1004)
T ss_pred             HHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHH
Confidence            9999999999999999998     57899999988887

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.23  E-value=0.00022  Score=76.35  Aligned_cols=123  Identities=20%  Similarity=0.167  Sum_probs=100.6

Q ss_pred             CCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCC
Q 048145           29 NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENK  108 (578)
Q Consensus        29 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~  108 (578)
                      .+.--...|+..|+...|+..++....  ..-.+|.+|.-|.++||+|..+.+.|++++|++.+.        ..     
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~--~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~--------~~-----   88 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAV--SKLNINCRDPLGRLALHIAIDNENLELQELLLDTSS--------EE-----   88 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccc--cccchhccChHhhhceecccccccHHHHHHHhcCcc--------cc-----
Confidence            445567789999999999999987433  122388899999999999999999999999998876        22     


Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHHh---------------ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHH
Q 048145          109 LGETPLYRAASVGKIEALRYFAEQ---------------VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKK  173 (578)
Q Consensus       109 ~g~TpLh~A~~~g~~~iv~~Ll~~---------------~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~  173 (578)
                        ..+|.+|+..|..+.|+.++.+               ..-..+.|||.+|+        ...+               
T Consensus        89 --gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAA--------h~Nn---------------  143 (822)
T KOG3609|consen   89 --GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAA--------HLNN---------------  143 (822)
T ss_pred             --chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHH--------Hhcc---------------
Confidence              4589999999999999999998               11256789999999        3333               


Q ss_pred             HHHHHHHHHhccccccccc
Q 048145          174 AVALVKMLVEKRIDDCATH  192 (578)
Q Consensus       174 ~~~~v~~Ll~~g~~~~~~~  192 (578)
                       .|+++.|+++|+++...+
T Consensus       144 -yEil~~Ll~kg~~i~~PH  161 (822)
T KOG3609|consen  144 -FEILQCLLTRGHCIPIPH  161 (822)
T ss_pred             -hHHHHHHHHcCCCCCCCc
Confidence             899999999999887663

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.22  E-value=2.8e-06  Score=84.31  Aligned_cols=82  Identities=20%  Similarity=0.178  Sum_probs=71.5

Q ss_pred             cccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCC
Q 048145            2 ALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINN   81 (578)
Q Consensus         2 a~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~   81 (578)
                      ++.|+.+...++|..  +...+-.--..|+||||+||+.|+.--+++|+-. |+|     ++..|.+|.||+.+|=..||
T Consensus       141 vRt~nlet~LRll~l--GA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vY-GAD-----~~a~d~~GmtP~~~AR~~gH  212 (669)
T KOG0818|consen  141 VRTGNLETCLRLLSL--GAQANFFHPEKGNTPLHVAAKAGQILQAELLAVY-GAD-----PGAQDSSGMTPVDYARQGGH  212 (669)
T ss_pred             hhcccHHHHHHHHHc--ccccCCCCcccCCchhHHHHhccchhhhhHHhhc-cCC-----CCCCCCCCCcHHHHHHhcCc
Confidence            467899999999988  3333334446899999999999999999999987 999     99999999999999999999


Q ss_pred             HHHHHHHHhh
Q 048145           82 VDVAKTLVEF   91 (578)
Q Consensus        82 ~~iv~~Ll~~   91 (578)
                      -++.+-|++.
T Consensus       213 ~~laeRl~e~  222 (669)
T KOG0818|consen  213 HELAERLVEI  222 (669)
T ss_pred             hHHHHHHHHH
Confidence            9999988874

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.20  E-value=2.2e-06  Score=86.60  Aligned_cols=85  Identities=21%  Similarity=0.250  Sum_probs=70.2

Q ss_pred             cCChHHHHHHHhcCCchhhhccC-CCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCH
Q 048145            4 KGDRQGFLRYFAQQTDEELLGYR-TFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNV   82 (578)
Q Consensus         4 ~G~~~~~~~ll~~~~~~~~~~~~-~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~   82 (578)
                      ..|+..+.-+|.....+.+++.. +.+|.|+||+||+.|+..+.++|+-+ ++|     +..+|.+|+|||.||=+.|..
T Consensus       634 ~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWy-g~d-----v~~rda~g~t~l~yar~a~sq  707 (749)
T KOG0705|consen  634 AEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWY-GVD-----VMARDAHGRTALFYARQAGSQ  707 (749)
T ss_pred             HHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHh-Ccc-----ceecccCCchhhhhHhhcccH
Confidence            34556566666653334444443 45679999999999999999999987 999     999999999999999999999


Q ss_pred             HHHHHHHhhcCC
Q 048145           83 DVAKTLVEFSKQ   94 (578)
Q Consensus        83 ~iv~~Ll~~g~~   94 (578)
                      |++..|+++|.-
T Consensus       708 ec~d~llq~gcp  719 (749)
T KOG0705|consen  708 ECIDVLLQYGCP  719 (749)
T ss_pred             HHHHHHHHcCCC
Confidence            999999999973

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.14  E-value=5.9e-06  Score=72.13  Aligned_cols=64  Identities=16%  Similarity=0.036  Sum_probs=61.1

Q ss_pred             hhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh
Q 048145           62 LMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ  132 (578)
Q Consensus        62 l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~  132 (578)
                      +|.+|..|+|||++|+..|+.+.+.+|+.+|.       ..+...+..|.+++.+|-+.|+.++++.|.+.
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~-------a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGV-------AFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhccCc-------ccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            89999999999999999999999999999995       48999999999999999999999999999987

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.05  E-value=5e-06  Score=90.41  Aligned_cols=112  Identities=17%  Similarity=0.137  Sum_probs=90.4

Q ss_pred             hhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCC
Q 048145           22 LLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKN  101 (578)
Q Consensus        22 ~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~  101 (578)
                      ........|+|.||.++..++..+++.+++-.+..     ....|.+|.-.+|+ |..++.+.+-+|+....       .
T Consensus       566 ~~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~-----~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~-------~  632 (975)
T KOG0520|consen  566 LSSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSG-----DLELDRDGQGVIHF-CAALGYEWAFLPISADG-------V  632 (975)
T ss_pred             ccccCCCcchHHHHHHHHHhHHHHHHHHhcccccC-----chhhcccCCChhhH-hhhcCCceeEEEEeecc-------c
Confidence            44566778999999999999999999999853444     55667788888888 66677777777776554       4


Q ss_pred             CcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----------ccccCCccHHHHHH
Q 048145          102 PLVVENKLGETPLYRAASVGKIEALRYFAEQ-----------VNQTAAISILSSKM  146 (578)
Q Consensus       102 ~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----------~~~~~g~t~Lh~A~  146 (578)
                      .++.+|..|+||||+|+.+|+..++..|++.           -....|.|+-.+|-
T Consensus       633 ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~  688 (975)
T KOG0520|consen  633 AIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLAR  688 (975)
T ss_pred             ccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhh
Confidence            8999999999999999999999999999976           12356888888877

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.01  E-value=4.7e-06  Score=91.31  Aligned_cols=89  Identities=18%  Similarity=0.218  Sum_probs=81.4

Q ss_pred             CCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCC
Q 048145           28 FNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVEN  107 (578)
Q Consensus        28 ~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n  107 (578)
                      ..|.|+||.|+..|...++++|+++ +++     ++.+|..|+||||.+...|+...+..|+++|+        +.+..+
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~-ga~-----vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a--------~~~a~~  719 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQN-GAD-----VNALDSKGRTPLHHATASGHTSIACLLLKRGA--------DPNAFD  719 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhc-CCc-----chhhhccCCCcchhhhhhcccchhhhhccccc--------cccccC
Confidence            3578999999999999999999999 999     99999999999999999999999999999999        899999


Q ss_pred             CCCCCHHHHHHHcCcHHHHHHHH
Q 048145          108 KLGETPLYRAASVGKIEALRYFA  130 (578)
Q Consensus       108 ~~g~TpLh~A~~~g~~~iv~~Ll  130 (578)
                      .+|.+||++|....+.+++-++.
T Consensus       720 ~~~~~~l~~a~~~~~~d~~~l~~  742 (785)
T KOG0521|consen  720 PDGKLPLDIAMEAANADIVLLLR  742 (785)
T ss_pred             ccCcchhhHHhhhccccHHHHHh
Confidence            99999999998876666655543

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.81  E-value=4.1e-05  Score=73.78  Aligned_cols=85  Identities=14%  Similarity=0.055  Sum_probs=67.0

Q ss_pred             CcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCC
Q 048145           31 ECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLG  110 (578)
Q Consensus        31 ~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g  110 (578)
                      .--|..||+.|+.+.|+.|++. |.+     +|..|....+||.+|+-.||.++|++|+++|+        ....-.-+|
T Consensus        37 f~elceacR~GD~d~v~~LVet-gvn-----VN~vD~fD~spL~lAsLcGHe~vvklLLenGA--------iC~rdtf~G  102 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVET-GVN-----VNAVDRFDSSPLYLASLCGHEDVVKLLLENGA--------ICSRDTFDG  102 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHh-CCC-----cchhhcccccHHHHHHHcCcHHHHHHHHHcCC--------cccccccCc
Confidence            3458999999999999999997 999     99999999999999999999999999999998        333333445


Q ss_pred             CCHHHHHHHcCcHHHHHHHHHh
Q 048145          111 ETPLYRAASVGKIEALRYFAEQ  132 (578)
Q Consensus       111 ~TpLh~A~~~g~~~iv~~Ll~~  132 (578)
                      .-. |+++.+.  .+-+.|++.
T Consensus       103 ~RC-~YgaLnd--~IR~mllsy  121 (516)
T KOG0511|consen  103 DRC-HYGALND--RIRRMLLSY  121 (516)
T ss_pred             chh-hhhhhhH--HHHHHHHHH
Confidence            543 4555443  334455554

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.71  E-value=2.2e-05  Score=86.18  Aligned_cols=78  Identities=18%  Similarity=0.161  Sum_probs=72.6

Q ss_pred             hhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHH
Q 048145          264 MRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVA  343 (578)
Q Consensus       264 ~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~  343 (578)
                      .++||.|+..|..-+++.|++ .++++|..|..|+||+|.+...|+...+..++     ..|++.+..|.+|++||++|.
T Consensus       657 ~s~lh~a~~~~~~~~~e~ll~-~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll-----~~~a~~~a~~~~~~~~l~~a~  730 (785)
T KOG0521|consen  657 CSLLHVAVGTGDSGAVELLLQ-NGADVNALDSKGRTPLHHATASGHTSIACLLL-----KRGADPNAFDPDGKLPLDIAM  730 (785)
T ss_pred             cchhhhhhccchHHHHHHHHh-cCCcchhhhccCCCcchhhhhhcccchhhhhc-----cccccccccCccCcchhhHHh
Confidence            349999999999999999998 99999999999999999999999999999999     577889999999999999998


Q ss_pred             hccc
Q 048145          344 DMKY  347 (578)
Q Consensus       344 ~~~~  347 (578)
                      ...+
T Consensus       731 ~~~~  734 (785)
T KOG0521|consen  731 EAAN  734 (785)
T ss_pred             hhcc
Confidence            7754

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.66  E-value=9e-05  Score=71.54  Aligned_cols=69  Identities=16%  Similarity=0.219  Sum_probs=60.3

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHH
Q 048145           70 NTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSS  144 (578)
Q Consensus        70 ~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~  144 (578)
                      .--|..||+.|.++.|+.|++.|.        ++|.+|....+||++|+..||.++|++|+++     ....+|.-.++-
T Consensus        37 f~elceacR~GD~d~v~~LVetgv--------nVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~Yg  108 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGV--------NVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHYG  108 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCC--------CcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhhh
Confidence            446899999999999999999998        9999999999999999999999999999998     233567766655


Q ss_pred             HH
Q 048145          145 KM  146 (578)
Q Consensus       145 A~  146 (578)
                      |.
T Consensus       109 aL  110 (516)
T KOG0511|consen  109 AL  110 (516)
T ss_pred             hh
Confidence            54

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.51  E-value=7e-05  Score=81.81  Aligned_cols=103  Identities=21%  Similarity=0.107  Sum_probs=80.7

Q ss_pred             hhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCC
Q 048145           22 LLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKN  101 (578)
Q Consensus        22 ~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~  101 (578)
                      .....|.+|.-.+|. |..++.+..-+++.-.+..     ++.+|.+|+||||+|+..|+..++..|++.|++.. .. .
T Consensus       600 ~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~a-----i~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~-~~-t  671 (975)
T KOG0520|consen  600 GDLELDRDGQGVIHF-CAALGYEWAFLPISADGVA-----IDIRDRNGWTPLHWAAFRGREKLVASLIELGADPG-AV-T  671 (975)
T ss_pred             CchhhcccCCChhhH-hhhcCCceeEEEEeecccc-----cccccCCCCcccchHhhcCHHHHHHHHHHhccccc-cc-c
Confidence            345567788888888 4555566665555544777     99999999999999999999999999999888432 11 2


Q ss_pred             CcccCCCCCCCHHHHHHHcCcHHHHHHHHHh
Q 048145          102 PLVVENKLGETPLYRAASVGKIEALRYFAEQ  132 (578)
Q Consensus       102 ~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~  132 (578)
                      ++...+..|.|+-..|-.+|+..+.-+|-+.
T Consensus       672 dps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  672 DPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             CCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            4555666799999999999999999888775

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.49  E-value=0.00022  Score=62.52  Aligned_cols=66  Identities=21%  Similarity=0.152  Sum_probs=61.8

Q ss_pred             hhccCCCCCCcHHHHHHhcCChHHHHHHHccCC-CchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcC
Q 048145           22 LLGYRTFNGECAIHVAAAMEDPELIKKFLGRLP-VEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSK   93 (578)
Q Consensus        22 ~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~-~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~   93 (578)
                      .++..|..|+|+|+.||..|+-+.|.+|+.+ + +.     +...|..|.+++.+|-+.|+.++++.|-+...
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgr-g~a~-----vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~   70 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGR-GVAF-----VGVTDESSLDAAQLAEKGGAQAFVHSLFENDR   70 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhcc-Cccc-----ccccccccchHHHHHHhcChHHHHHHHHHHhc
Confidence            4578899999999999999999999999999 6 77     99999999999999999999999999998865

>smart00248 ANK ankyrin repeats

Probab=96.68  E-value=0.0026  Score=37.61  Aligned_cols=26  Identities=31%  Similarity=0.464  Sum_probs=22.0

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhhcC
Q 048145           68 NGNTAVHALATINNVDVAKTLVEFSK   93 (578)
Q Consensus        68 ~G~TpLh~Aa~~g~~~iv~~Ll~~g~   93 (578)
                      +|.||||+|+..|+.++++.|++.+.
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            47888888888888888888888876

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=95.91  E-value=0.01  Score=34.79  Aligned_cols=27  Identities=26%  Similarity=0.506  Sum_probs=24.0

Q ss_pred             CCCcHHHHHHhcCChHHHHHHHccCCCc
Q 048145           29 NGECAIHVAAAMEDPELIKKFLGRLPVE   56 (578)
Q Consensus        29 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~   56 (578)
                      +|.||||+|+..|+.++++.|++. +.+
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~-~~~   27 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDK-GAD   27 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHc-CCC
Confidence            478999999999999999999988 544

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.80  E-value=0.014  Score=58.99  Aligned_cols=55  Identities=25%  Similarity=0.245  Sum_probs=46.2

Q ss_pred             CCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhc
Q 048145           29 NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFS   92 (578)
Q Consensus        29 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g   92 (578)
                      .-.|+||+|+.+|..++|.++|+. ++|     +.++|..|.||..+++   +.||=..++.+.
T Consensus       429 ltsT~LH~aa~qg~~k~v~~~Lee-g~D-----p~~kd~~Grtpy~ls~---nkdVk~~F~a~~  483 (591)
T KOG2505|consen  429 LTSTFLHYAAAQGARKCVKYFLEE-GCD-----PSTKDGAGRTPYSLSA---NKDVKSIFIARR  483 (591)
T ss_pred             ccchHHHHHHhcchHHHHHHHHHh-cCC-----chhcccCCCCcccccc---cHHHHHHHHHHH
Confidence            357999999999999999999999 799     9999999999999888   455555555443

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.42  E-value=0.017  Score=58.39  Aligned_cols=67  Identities=18%  Similarity=0.107  Sum_probs=51.3

Q ss_pred             hHHHHHHHccCCCchh-hhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHH
Q 048145           43 PELIKKFLGRLPVEKR-LEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAA  118 (578)
Q Consensus        43 ~~~v~~Ll~~~~~~~~-~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~  118 (578)
                      .+.+++|.++ +.+.. .--+...+.---|+||+|+..|.-++|.+||+.|+        |+.++|..|.||..++.
T Consensus       404 p~~ie~lken-~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~--------Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKEN-LLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGC--------DPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhc-CCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcC--------CchhcccCCCCcccccc
Confidence            5677777776 33300 00022233446689999999999999999999999        99999999999999887

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=92.14  E-value=2.3  Score=37.87  Aligned_cols=45  Identities=22%  Similarity=0.331  Sum_probs=39.7

Q ss_pred             HHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHH
Q 048145          266 ILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIK  317 (578)
Q Consensus       266 pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll  317 (578)
                      -|..|+..|-...+.+.|+ +|.+++.      ++|-.|+++++.+|+.+++
T Consensus       146 hl~~a~~kgll~F~letlk-ygg~~~~------~vls~Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  146 HLEKAAAKGLLPFVLETLK-YGGNVDI------IVLSQAVKYNHRKILDYFI  190 (192)
T ss_pred             HHHHHHHCCCHHHHHHHHH-cCCcccH------HHHHHHHHhhHHHHHHHhh
Confidence            7889999999999999998 6655553      8999999999999999987

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=89.57  E-value=1.2  Score=40.81  Aligned_cols=103  Identities=12%  Similarity=0.100  Sum_probs=70.5

Q ss_pred             hhhhccCCCCC--CcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHH--cCCHHHHHHHHhhcCCC
Q 048145           20 EELLGYRTFNG--ECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALAT--INNVDVAKTLVEFSKQS   95 (578)
Q Consensus        20 ~~~~~~~~~~g--~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~--~g~~~iv~~Ll~~g~~~   95 (578)
                      +.+.+.++..+  .++|-+|...+..+++.+|+.+..-. .++.....-  +.--+-++..  +.+..++++.|++|-  
T Consensus       167 ~~i~~~VtdKkdA~~Am~~si~~~K~dva~~lls~f~ft-~~dv~~~~~--~~ydieY~LS~h~a~~kvL~~Fi~~Gl--  241 (284)
T PF06128_consen  167 EEISNLVTDKKDAHQAMWLSIGNAKEDVALYLLSKFNFT-KQDVASMEK--ELYDIEYLLSEHSASYKVLEYFINRGL--  241 (284)
T ss_pred             HHHHHHhcchHHHHHHHHHHhcccHHHHHHHHHhhccee-cchhhhcCc--chhhHHHHHhhcCCcHHHHHHHHhccc--
Confidence            34444444443  47888999999999999999873311 111122211  2224444443  446789999999986  


Q ss_pred             CCCCCCCcc---cCCCCCCCHHHHHHHcCcHHHHHHHHHh
Q 048145           96 NDADKNPLV---VENKLGETPLYRAASVGKIEALRYFAEQ  132 (578)
Q Consensus        96 ~~~~~~~~~---~~n~~g~TpLh~A~~~g~~~iv~~Ll~~  132 (578)
                           .++|   .+-+.|+|-|.-|..+++.+++..|+++
T Consensus       242 -----v~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~  276 (284)
T PF06128_consen  242 -----VDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKY  276 (284)
T ss_pred             -----cccchhhhccCCcchHHHhHHhcCcHHHHHHHHHc
Confidence                 3444   3456799999999999999999999986

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=88.16  E-value=1.1  Score=34.12  Aligned_cols=47  Identities=26%  Similarity=0.280  Sum_probs=39.4

Q ss_pred             HHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhh
Q 048145          266 ILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKM  320 (578)
Q Consensus       266 pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~  320 (578)
                      -+..|...|+.|+++.+++...  +   +   ...+..|++..+-+++++|++++
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~~--~---~---~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKNK--P---D---NDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHhc--c---H---HHHHHHHHHHhhHHHHHHHHHhc
Confidence            7899999999999999997331  1   1   56899999999999999999544

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=86.09  E-value=9  Score=34.29  Aligned_cols=73  Identities=14%  Similarity=0.085  Sum_probs=45.6

Q ss_pred             CcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCC
Q 048145           31 ECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLG  110 (578)
Q Consensus        31 ~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g  110 (578)
                      ...|..|+..+...+.+..-+.         +...-...++-.-.||+..+.|||+++-+           ++...+  -
T Consensus        47 ~CLl~HAVk~nmL~ILqkyke~---------L~~~~~~~q~LFElAC~~qkydiV~WI~q-----------nL~i~~--~  104 (192)
T PF03158_consen   47 WCLLYHAVKYNMLSILQKYKED---------LENERYLNQELFELACEEQKYDIVKWIGQ-----------NLHIYN--P  104 (192)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHH---------hhcchhHHHHHHHHHHHHccccHHHHHhh-----------ccCCCC--c
Confidence            3456677888888887776555         22111345667778888888888888832           222222  2


Q ss_pred             CCHHHHHHHcCcHHH
Q 048145          111 ETPLYRAASVGKIEA  125 (578)
Q Consensus       111 ~TpLh~A~~~g~~~i  125 (578)
                      ++-+-.|...++.++
T Consensus       105 ~~iFdIA~~~kDlsL  119 (192)
T PF03158_consen  105 EDIFDIAFAKKDLSL  119 (192)
T ss_pred             hhhhhhhhhccchhH
Confidence            345667777777665

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=83.89  E-value=2  Score=32.69  Aligned_cols=50  Identities=18%  Similarity=0.137  Sum_probs=41.1

Q ss_pred             CcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcC
Q 048145           31 ECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSK   93 (578)
Q Consensus        31 ~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~   93 (578)
                      ...|..|+..|+.|+++.+++. +.      +      ....+..|+..-+-|++++|++.-.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~-~~------~------~~~~l~~AI~~H~n~i~~~l~~~y~   56 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKK-NK------P------DNDCLEYAIKSHNNEIADWLIENYN   56 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHH-hc------c------HHHHHHHHHHHhhHHHHHHHHHhcC
Confidence            4568999999999999999976 21      1      1567999999999999999998743

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=81.96  E-value=9.4  Score=35.27  Aligned_cols=46  Identities=13%  Similarity=0.166  Sum_probs=33.6

Q ss_pred             HHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh
Q 048145           72 AVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ  132 (578)
Q Consensus        72 pLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~  132 (578)
                      .|--|+..-+.+-+.-++....               .-.+++-+|..++..+++.+|+..
T Consensus       156 sledAV~AsN~~~i~~~VtdKk---------------dA~~Am~~si~~~K~dva~~lls~  201 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDKK---------------DAHQAMWLSIGNAKEDVALYLLSK  201 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcchH---------------HHHHHHHHHhcccHHHHHHHHHhh
Confidence            4566777777666666654332               245789999999999999999987

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	578
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-10
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-06
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-08
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	9e-07
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-08
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-06
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-08
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-06
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-06
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-05
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-08
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-07
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	8e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-07
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-06
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-08
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-05
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-08
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-07
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-06
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-04
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-08
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-05
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-07
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-07
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-04
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-06
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-04
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-07
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-06
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-07
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-07
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	9e-05
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-04
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-07
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-07
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-07
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-07
3hra_A	201	Ankyrin repeat family protein; structural protein;	9e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-04
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-07
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-07
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-04
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-07
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-06
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-05
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-07
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-07
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-07
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-07
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-06
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-05
2pnn_A	273	Transient receptor potential cation channel subfa	4e-07
2pnn_A	273	Transient receptor potential cation channel subfa	4e-05
2pnn_A	273	Transient receptor potential cation channel subfa	2e-04
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-07
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-04
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-07
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-07
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-07
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-05
2rfa_A	232	Transient receptor potential cation channel subfa	5e-07
2rfa_A	232	Transient receptor potential cation channel subfa	3e-06
2rfa_A	232	Transient receptor potential cation channel subfa	4e-06
2rfa_A	232	Transient receptor potential cation channel subfa	5e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-07
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-06
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-07
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-04
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-05
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-05
2etb_A	256	Transient receptor potential cation channel subfam	7e-07
2etb_A	256	Transient receptor potential cation channel subfam	1e-06
2etb_A	256	Transient receptor potential cation channel subfam	9e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-07
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-06
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-06
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	8e-07
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-06
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-06
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-06
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	8e-07
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-06
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-06
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-06
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-07
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-06
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-06
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-06
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-06
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-06
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-06
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-04
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-06
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-04
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-06
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-06
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-06
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-05
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-05
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-06
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-06
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-06
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-05
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-06
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-06
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	9e-04
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-06
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	9e-04
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	6e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	8e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.3 bits (153), Expect = 2e-10
 Identities = 75/549 (13%), Positives = 150/549 (27%), Gaps = 167/549 (30%)

Query: 6   DRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRL-PVEKRLEALMQ 64
                 R + +Q D      R +N            +    K  + RL P  K  +AL++
Sbjct: 104 QPSMMTRMYIEQRD------RLYND-----------NQVFAKYNVSRLQPYLKLRQALLE 146

Query: 65  TDDNGNTAVH--------ALA--------------------TINNVDVAKTLVEFSKQ-S 95
                N  +          +A                     + N +  +T++E  ++  
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206

Query: 96  NDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVI 155
              D N     +        R  S+ + E  R    +  +   + +L +     +     
Sbjct: 207 YQIDPN-WTSRSDHSSNIKLRIHSI-QAELRRLLKSKPYENCLL-VLLN-----VQN--- 255

Query: 156 QGCPAIKKIWEKKQIHKKAVALVKMLVEKR----IDDCATHEKPTPGVTEISLGLGKGNI 211
                  K W    +        K+L+  R     D  +        +   S+ L    +
Sbjct: 256 ------AKAWNAFNLS------CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 212 EK---KVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTK--DMTSSMRTMRI 266
           +    K +D       +L  +V     N   +    +++     T       +  +   I
Sbjct: 304 KSLLLKYLDCRPQ---DLPREVLTT--NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358

Query: 267 LLFAVSNGIIEILE--EIRHKYPQTL----DNVNEKGQNILHVAIMYRQLEIF------- 313
           +    S   + +LE  E R  +   L     + +          I    L +        
Sbjct: 359 I--ESS---LNVLEPAEYRKMF-DRLSVFPPSAH----------IPTILLSLIWFDVIKS 402

Query: 314 ---EIIKEKMQLSLAE-WA-------------LKIDNEGYTILHQVADMKYYKQGTQAGP 356
               ++ +  + SL E                LK+  E    LH+     Y         
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY--------- 453

Query: 357 VLQFQDELEWFERVKDIAPPH-------YAMHRDKNKRMTAN-DLFDLTHEDQLRKAQDW 408
                   +      D+ PP+       +  H  KN        LF +   D  R  +  
Sbjct: 454 --NIPKTFDS----DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD-FRFLEQK 506

Query: 409 IKETSQSCSTLAILIATV----VFTAAFTVPGGTND---KGFPHFLESP----LFYVFTV 457
           I+  S + +    ++ T+     +           +        FL       +   +T 
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYT- 565

Query: 458 MDVVSLALS 466
            D++ +AL 
Sbjct: 566 -DLLRIALM 573

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 1e-05
 Identities = 59/396 (14%), Positives = 112/396 (28%), Gaps = 135/396 (34%)

Query: 35  HVAAAMEDPELIKKFLGRLPVEKRLE-ALMQTDDNGNTAVHALATINNVDV-AKTLVEFS 92
           H +        I+  L RL   K  E  L+   +     V      N  ++  K L+  +
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN-----VQNAKAWNAFNLSCKILLT-T 272

Query: 93  KQSNDAD-------KNPLVVENKLGETPLYRAASVGKIEALRYFA-----------EQVN 134
           +     D        +  +  + +  TP          E                  +V 
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPD---------EVKSLLLKYLDCRPQDLPREVL 323

Query: 135 QTA--AISILSSKMYIAI-----WRQVIQGCPAIKKIWEKKQIHKKAV-ALVKMLVEKRI 186
            T    +SI++  +   +     W+ V           +   I + ++  L      K  
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHV--------NCDKLTTIIESSLNVLEPAEYRKMF 375

Query: 187 DDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVE-----------------LMIQ 229
           D  +        +  I L L   ++ K  V V   +  +                 + ++
Sbjct: 376 DRLSVFPPSAH-IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434

Query: 230 VKKGCTNKA--H---VDQY--PQAVDQENDTTKD-------------MTSSMRTMRILLF 269
           +K    N+   H   VD Y  P+  D  +D                 + +     R+ LF
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDS-DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493

Query: 270 ---------------------AVSNGIIEILEEIRHKY-PQTLDN--------------- 292
                                  S  I+  L++++  Y P   DN               
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK-FYKPYICDNDPKYERLVNAILDFL 552

Query: 293 -------VNEKGQNILHVAIMYRQLEIFEIIKEKMQ 321
                  +  K  ++L +A+M     IFE   +++Q
Sbjct: 553 PKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 60.6 bits (148), Expect = 2e-10
 Identities = 44/335 (13%), Positives = 90/335 (26%), Gaps = 88/335 (26%)

Query: 22  LLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINN 81
           + GY T +G+ A+H+A   +    +   LG     + L+     +D G TA+H  A +  
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDL---QNDLGQTALHLAAILGE 57

Query: 82  VDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISI 141
               + L      +  A      V  + G T L+ A  V            +    +   
Sbjct: 58  ASTVEKLY-----AAGAGVL---VAERGGHTALHLACRVRAHTCACVL---LQPRPSHPR 106

Query: 142 LSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRID-DCATHEKPTPGVT 200
            +S  Y+   +             + +   +          + R+  +   ++  TP   
Sbjct: 107 DASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEE--EPRDEDWRLQLEAENYDGHTP--- 161

Query: 201 EISLGL----GKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKD 256
                L       + E           V L+          A ++      +     T  
Sbjct: 162 -----LHVAVIHKDAEM----------VRLLRD------AGADLN----KPEPTCGRT-- 194

Query: 257 MTSSMRTMRILLFAVSNGIIEILEE-IRHKYPQTLDNVNEK---GQNILHVAIMYRQLEI 312
                     L  AV      +LE  ++        +   +   G+  L  A++     +
Sbjct: 195 ---------PLHLAVEAQAASVLELLLKAGA-----DPTARMYGGRTPLGSALLRPNPIL 240

Query: 313 FEI-------IKEKMQLSLAEWALKIDNEGYTILH 340
             +         E               +  +   
Sbjct: 241 ARLLRAHGAPEPED------------GGDKLSPCS 263

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 44.1 bits (105), Expect = 6e-05
 Identities = 8/60 (13%), Positives = 19/60 (31%), Gaps = 8/60 (13%)

Query: 65  TDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
               G T + +     N  +A+ L      ++ A +     +     +P   + S    +
Sbjct: 221 RMYGGRTPLGSALLRPNPILARLLR-----AHGAPEP---EDGGDKLSPCSSSGSDSDSD 272

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 60.2 bits (147), Expect = 7e-10
 Identities = 57/325 (17%), Positives = 104/325 (32%), Gaps = 100/325 (30%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGR-LPVEKRLEALMQTDDNGNTAVHALATINNVDVAKT 87
           +G   +HVA+ M    ++K  L R              +    T +H  A   + +VAK 
Sbjct: 13  SGLTPLHVASFMGHLPIVKNLLQRGASPNVS-------NVKVETPLHMAARAGHTEVAKY 65

Query: 88  LVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMY 147
           L+      N A  N    + K  +TPL+ AA +G    ++     +   A  ++ ++  +
Sbjct: 66  LL-----QNKAKVN---AKAKDDQTPLHCAARIGHTNMVKLL---LENNANPNLATTAGH 114

Query: 148 IAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRID-DCATHEKPTPGVTEISLGL 206
             +     +G                    V  L+EK     C T +  TP    + +  
Sbjct: 115 TPLHIAAREGHVET----------------VLALLEKEASQACMTKKGFTP----LHVAA 154

Query: 207 GKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRI 266
             G +   V         EL+++        AH +    A  +   T             
Sbjct: 155 KYGKVR--V--------AELLLE------RDAHPN----AAGKNGLTP------------ 182

Query: 267 LLFAVSNGIIEILEE-IRHKYPQTLDNVNEK---GQNILHVAIMYRQLEIFEI------- 315
           L  AV +  ++I++  +         + +     G   LH+A    Q+E+          
Sbjct: 183 LHVAVHHNNLDIVKLLLPRG-----GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS 237

Query: 316 IKEKMQLSLAEWALKIDNEGYTILH 340
              +              +G T LH
Sbjct: 238 ANAE------------SVQGVTPLH 250

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 54.4 bits (132), Expect = 4e-08
 Identities = 56/342 (16%), Positives = 104/342 (30%), Gaps = 101/342 (29%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGR-LPVEKRLEALMQTDDNGNTAVHALATINNVDVAKT 87
             E  +H+AA     E+ K  L     V  +         +  T +H  A I + ++ K 
Sbjct: 46  KVETPLHMAARAGHTEVAKYLLQNKAKVNAK-------AKDDQTPLHCAARIGHTNMVKL 98

Query: 88  LVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMY 147
           L+      N+A+ N   +    G TPL+ AA  G +E +      + + A+ + ++ K +
Sbjct: 99  LL-----ENNANPN---LATTAGHTPLHIAAREGHVETVLAL---LEKEASQACMTKKGF 147

Query: 148 IAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRID-DCATHEKPTP-------GV 199
             +      G   +                 ++L+E+    + A     TP         
Sbjct: 148 TPLHVAAKYGKVRV----------------AELLLERDAHPNAAGKNGLTPLHVAVHHNN 191

Query: 200 TEI-SLGLGKG-NIEKKVVDVSAGEWVELMIQVKKGCT--------NKAHVDQYPQAVDQ 249
            +I  L L +G +      +     +  L I  K+                +    A   
Sbjct: 192 LDIVKLLLPRGGSPHSPAWN----GYTPLHIAAKQNQVEVARSLLQYGGSAN----AESV 243

Query: 250 ENDTTKDMTSSMRTMRILLFAVSNGIIEILEE-IRHKYPQTLDNVNEK---GQNILHVAI 305
           +  T             L  A   G  E++   +  +      N N     G   LH+  
Sbjct: 244 QGVTP------------LHLAAQEGHAEMVALLLSKQ-----ANGNLGNKSGLTPLHLVA 286

Query: 306 MYRQLEIFEI-------IKEKMQLSLAEWALKIDNEGYTILH 340
               + + ++       +                  GYT LH
Sbjct: 287 QEGHVPVADVLIKHGVMVDAT------------TRMGYTPLH 316

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 52.1 bits (126), Expect = 3e-07
 Identities = 55/299 (18%), Positives = 95/299 (31%), Gaps = 114/299 (38%)

Query: 65  TDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
             ++G T +H  + + ++ + K L+        A  N   V N   ETPL+ AA  G  E
Sbjct: 10  GGESGLTPLHVASFMGHLPIVKNLL-----QRGASPN---VSNVKVETPLHMAARAGHTE 61

Query: 125 ALRYFAEQ---VN------QTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAV 175
             +Y  +    VN      QT         ++ A       G   +              
Sbjct: 62  VAKYLLQNKAKVNAKAKDDQTP--------LHCA----ARIGHTNM-------------- 95

Query: 176 ALVKMLVEKRID-DCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGC 234
             VK+L+E   + + AT    TP    + +   +G++E           V  +++     
Sbjct: 96  --VKLLLENNANPNLATTAGHTP----LHIAAREGHVE--T--------VLALLE----- 134

Query: 235 TNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNG---IIEILEEIRHKYPQTLD 291
             +A        + ++  T             L  A   G   + E+L  +         
Sbjct: 135 -KEASQA----CMTKKGFTP------------LHVAAKYGKVRVAELL--LERDA----- 170

Query: 292 NVNEK---GQNILHVAIMYRQLEIFEI-------IKEKMQLSLAEWALKIDNEGYTILH 340
           + N     G   LHVA+ +  L+I ++                          GYT LH
Sbjct: 171 HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSP------------AWNGYTPLH 217

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 50.2 bits (121), Expect = 1e-06
 Identities = 55/332 (16%), Positives = 100/332 (30%), Gaps = 108/332 (32%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGR-LPVEKRLEALMQTDDNGNTAVHALATINNVDVAKT 87
            G   +H+AA     E +   L +                 G T +H  A    V VA+ 
Sbjct: 112 AGHTPLHIAAREGHVETVLALLEKEASQACM-------TKKGFTPLHVAAKYGKVRVAEL 164

Query: 88  LVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMY 147
           L+       DA  N      K G TPL+ A     ++ ++     + +  +    +   Y
Sbjct: 165 LL-----ERDAHPN---AAGKNGLTPLHVAVHHNNLDIVKLL---LPRGGSPHSPAWNGY 213

Query: 148 IAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRID-DCATHEKPTPGVTEISLGL 206
             +     Q    +                 + L++     +  + +  TP      L L
Sbjct: 214 TPLHIAAKQNQVEV----------------ARSLLQYGGSANAESVQGVTP------LHL 251

Query: 207 --GKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTM 264
              +G+ E           V L++      + +A+ +      ++   T           
Sbjct: 252 AAQEGHAEM----------VALLL------SKQANGN----LGNKSGLTP---------- 281

Query: 265 RILLFAVSNG---IIEILEEIRHKYPQTLDNVNEK---GQNILHVAIMYRQLEIFEI--- 315
             L      G   + ++L  I+H        V+     G   LHVA  Y  +++ +    
Sbjct: 282 --LHLVAQEGHVPVADVL--IKHGV-----MVDATTRMGYTPLHVASHYGNIKLVKFLLQ 332

Query: 316 ----IKEKMQLSLAEWALKIDNEGYTILHQVA 343
               +  K               GY+ LHQ A
Sbjct: 333 HQADVNAK------------TKLGYSPLHQAA 352

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 50.2 bits (121), Expect = 1e-06
 Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 18/118 (15%)

Query: 26  RTFNGECAIHVAAAMEDPELIKKFLGRLPVEKR--LEALMQTDDNGNTAVHALATINNVD 83
            T  G   +HVA+   + +L+K FL    ++ +  + A       G + +H  A   + D
Sbjct: 307 TTRMGYTPLHVASHYGNIKLVK-FL----LQHQADVNA---KTKLGYSPLHQAAQQGHTD 358

Query: 84  VAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISI 141
           +   L+      N A  N     +  G TPL  A  +G I          ++T+ + +
Sbjct: 359 IVTLLL-----KNGASPN---EVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLV 408

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 48.6 bits (117), Expect = 3e-06
 Identities = 52/341 (15%), Positives = 104/341 (30%), Gaps = 92/341 (26%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTL 88
            G   +HVAA      + +  L    +E+          NG T +H     NN+D+ K L
Sbjct: 145 KGFTPLHVAAKYGKVRVAE-LL----LERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLL 198

Query: 89  VEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYI 148
           +           +        G TPL+ AA   ++E  R     +    + +  S +   
Sbjct: 199 L-----PRGGSPH---SPAWNGYTPLHIAAKQNQVEVARSL---LQYGGSANAESVQGVT 247

Query: 149 AIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRID-DCATHEKPTP---------- 197
            +     +G   +                V +L+ K+ + +       TP          
Sbjct: 248 PLHLAAQEGHAEM----------------VALLLSKQANGNLGNKSGLTPLHLVAQEGHV 291

Query: 198 GVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCT--------NKAHVDQYPQAVDQ 249
            V ++ +  G   ++      +   +  L +    G          ++A V+    A  +
Sbjct: 292 PVADVLIKHG-VMVDAT----TRMGYTPLHVASHYGNIKLVKFLLQHQADVN----AKTK 342

Query: 250 ENDTTKDMTSSMRTMRILLFAVSNG---IIEILEEIRHKYPQTLDNVNEK---GQNILHV 303
              +             L  A   G   I+ +L  +++       + NE    G   L +
Sbjct: 343 LGYSP------------LHQAAQQGHTDIVTLL--LKNGA-----SPNEVSSDGTTPLAI 383

Query: 304 AIMYRQLEIFEIIKEKMQLSLAEWAL--KIDNEGYTILHQV 342
           A     + + +++K        E +     D    +    V
Sbjct: 384 AKRLGYISVTDVLKVV----TDETSFVLVSDKHRMSFPETV 420

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 47.5 bits (114), Expect = 8e-06
 Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 16/104 (15%)

Query: 26  RTFNGECAIHVAAAMEDPELIKKFLGR-LPVEKRLEALMQTDDNGNTAVHALATINNVDV 84
              +G   +H+ A      +    +   + V+            G T +H  +   N+ +
Sbjct: 274 GNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDAT-------TRMGYTPLHVASHYGNIKL 326

Query: 85  AKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRY 128
            K L+      + AD N    + KLG +PL++AA  G  + +  
Sbjct: 327 VKFLL-----QHQADVN---AKTKLGYSPLHQAAQQGHTDIVTL 362

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 52.8 bits (128), Expect = 2e-08
 Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 14/99 (14%)

Query: 30  GECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLV 89
               +  AAA  D + +++ L R  V          +  G TA+       +  +A  L+
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPD-----ALNRFGKTALQV-MMFGSTAIALELL 55

Query: 90  EFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRY 128
                   A  N   V++  G +P++ AA  G ++ L+ 
Sbjct: 56  -----KQGASPN---VQDTSGTSPVHDAARTGFLDTLKV 86

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 47.8 bits (115), Expect = 9e-07
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 8/60 (13%)

Query: 65  TDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
            D +G + VH  A    +D  K LV      + AD N   V +  G  P++ A   G   
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLV-----EHGADVN---VPDGTGALPIHLAVQEGHTA 115

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 43.2 bits (103), Expect = 4e-05
 Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 9/68 (13%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEA 125
           D  G   +H      +  V   L        ++D +     +  G TPL  A   G  + 
Sbjct: 98  DGTGALPIHLAVQEGHTAVVSFLAA------ESDLH---RRDARGLTPLELALQRGAQDL 148

Query: 126 LRYFAEQV 133
           +      +
Sbjct: 149 VDILQGHM 156

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 55.0 bits (132), Expect = 2e-08
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 63  MQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGK 122
           +  D++GNT +H L +I N+++ K LV      + +++      + +GE+ L +A     
Sbjct: 125 IPVDEHGNTPLHWLTSIANLELVKHLV-----KHGSNRL---YGDNMGESCLVKAVKSVN 176

Query: 123 IEALRYFAE 131
                 F  
Sbjct: 177 NYDSGTFEA 185

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 48.5 bits (115), Expect = 3e-06
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 10/92 (10%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTL 88
           N + +       E  + I + L    +   +  L   D NG+T ++  A + N+ +   L
Sbjct: 245 NEKESKPNDKNGERKDSILENLDLKWIIANM--LNAQDSNGDTCLNIAARLGNISIVDAL 302

Query: 89  VEFSKQSNDADKNPLVVENKLGETPLYRAASV 120
           +        AD     + NK G  P+   A +
Sbjct: 303 L-----DYGADPF---IANKSGLRPVDFGAGL 326

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 53.3 bits (129), Expect = 4e-08
 Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 7/103 (6%)

Query: 26  RTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVA 85
           R F G   +H+A        +               L  T+ NG+T +H  +    + + 
Sbjct: 74  RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIV 133

Query: 86  KTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRY 128
           + LV     S  AD N    E   G T L+ A  +   + +  
Sbjct: 134 ELLV-----SLGADVN--AQEPCNGRTALHLAVDLQNPDLVSL 169

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 47.2 bits (113), Expect = 4e-06
 Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 64  QTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKI 123
           Q  ++G++ +H         +   ++   K  + A  N    +N L +TPL+ A    + 
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVK-GDLAFLN---FQNNLQQTPLHLAVITNQP 58

Query: 124 EALRY 128
           E    
Sbjct: 59  EIAEA 63

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 47.2 bits (113), Expect = 4e-06
 Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 14/103 (13%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEA---LMQTDDNGNTAVHALATINNVDVA 85
             +  +H+A     PE+ +  L        L A       D  GNT +H       +   
Sbjct: 44  LQQTPLHLAVITNQPEIAE-AL--------LGAGCDPELRDFRGNTPLHLACEQGCLASV 94

Query: 86  KTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRY 128
             L      +     + L   N  G T L+ A+  G +  +  
Sbjct: 95  GVLT--QSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVEL 135

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 13/99 (13%)

Query: 26  RTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVA 85
             +NG   +H+A+      +++  L    V    +   Q   NG TA+H    + N D+ 
Sbjct: 113 TNYNGHTCLHLASIHGYLGIVE-LL----VSLGADVNAQEPCNGRTALHLAVDLQNPDLV 167

Query: 86  KTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
             L+        AD N        G +P           
Sbjct: 168 SLLL-----KCGADVN---RVTYQGYSPYQLTWGRPSTR 198

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 43.7 bits (104), Expect = 7e-05
 Identities = 17/105 (16%), Positives = 41/105 (39%), Gaps = 20/105 (19%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGRLP-----VEKRLEALMQTDDNGNTAVHALATINNVD 83
           +G+  +H+A   E+  L  + + ++      +  +       ++   T +H     N  +
Sbjct: 7   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQ-------NNLQQTPLHLAVITNQPE 59

Query: 84  VAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRY 128
           +A+ L+         D     + +  G TPL+ A   G + ++  
Sbjct: 60  IAEALL-----GAGCDPE---LRDFRGNTPLHLACEQGCLASVGV 96

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 53.2 bits (129), Expect = 4e-08
 Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 16/102 (15%)

Query: 30  GECAIHVAAAMEDPELIKKFL---GRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAK 86
               +H A    +   +++ L     L ++K        D +G   +H   +    ++  
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQK--------DQDGRIPLHWSVSFQAHEITS 53

Query: 87  TLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRY 128
            L+     S   + N     +  G TP + A SVG +E ++ 
Sbjct: 54  FLL-----SKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKS 90

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 50.9 bits (123), Expect = 2e-07
 Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 20/104 (19%)

Query: 29  NGECAIHVAAAMEDPE----LIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDV 84
           +G    H+A ++ + E    L  + L     +          + G T +H        +V
Sbjct: 71  SGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKI--------TNQGVTCLHLAVGKKWFEV 122

Query: 85  AKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRY 128
           ++ L+      N A      +++K  + PL+RAASVG ++ +  
Sbjct: 123 SQFLI-----ENGASVR---IKDKFNQIPLHRAASVGSLKLIEL 158

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 47.4 bits (114), Expect = 3e-06
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 9/96 (9%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTL 88
           +G   +H + + +  E+   FL  L   + +      DD+G T  H   ++ N++V K+L
Sbjct: 35  DGRIPLHWSVSFQAHEITS-FL--LSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91

Query: 89  VEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
            +   +    D N        G T L+ A      E
Sbjct: 92  YD---RPLKPDLN---KITNQGVTCLHLAVGKKWFE 121

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 44.0 bits (105), Expect = 5e-05
 Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 18/101 (17%)

Query: 29  NGECAIHVAAAMEDPELIKKFL---GRLPVEKRLEALMQTDDNGNTAVHALATINNVDVA 85
             +  +H AA++   +LI+  L   G+  V  +       D  G T +       + D A
Sbjct: 139 FNQIPLHRAASVGSLKLIE-LLCGLGKSAVNWQ-------DKQGWTPLFHALAEGHGDAA 190

Query: 86  KTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEAL 126
             LVE       A+ +   + +  G      A +    +  
Sbjct: 191 VLLVE----KYGAEYD---LVDNKGAKAEDVALNEQVKKFF 224

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 43.2 bits (103), Expect = 8e-05
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 7/63 (11%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEA 125
           D      +H  A++ ++ + + L         +  N    ++K G TPL+ A + G  +A
Sbjct: 137 DKFNQIPLHRAASVGSLKLIELLCG----LGKSAVN---WQDKQGWTPLFHALAEGHGDA 189

Query: 126 LRY 128
              
Sbjct: 190 AVL 192

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 54.5 bits (132), Expect = 5e-08
 Identities = 42/342 (12%), Positives = 98/342 (28%), Gaps = 87/342 (25%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGR-LPVEKRLEALMQTDDNGNTAVHALATINNVDVAKT 87
                IHVAA     + +++ +   +    +       +  G TA+H       VD AK 
Sbjct: 19  ENMEKIHVAARKGQTDEVRRLIETGVSPTIQ-------NRFGCTALHLACKFGCVDTAKY 71

Query: 88  LVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ---VNQTAAISILSS 144
           L      S     +        G+ P++ A    K + +    E      Q         
Sbjct: 72  LA-----SVGEVHS-----LWHGQKPIHLAVMANKTDLVVALVEGAKERGQMP------- 114

Query: 145 KMYIAIWR---QVIQGCPAIKKIWEKKQIH------KKAVALVKMLVEKRID-DCATHEK 194
              +       +V +    +K    +  +H       + + ++K+LV+            
Sbjct: 115 -ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKAD 173

Query: 195 PTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTT 254
            TP    +   +   N E           ++LM+       +   +D      +++ ++ 
Sbjct: 174 ETP----LMRAMEFRNRE--A--------LDLMMD-TVPSKSSLRLD----YANKQGNSH 214

Query: 255 KDMTSSMRTMRILLFAVSNGIIEILEE-IRHKYPQTLDNVNEK---GQNILHVAIMYRQL 310
                       L +A+     ++    +         +VN +       L++++    +
Sbjct: 215 ------------LHWAILINWEDVAMRFVEMGI-----DVNMEDNEHTVPLYLSVRAAMV 257

Query: 311 EIFE--------IIKEKMQLSLAEWALKIDNEGYTILHQVAD 344
            + +         + +          L         +   AD
Sbjct: 258 LLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAAD 299

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 50.3 bits (121), Expect = 8e-07
 Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 8/64 (12%)

Query: 65  TDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
           +DD     +H  A     D  + L+               ++N+ G T L+ A   G ++
Sbjct: 16  SDDENMEKIHVAARKGQTDEVRRLI-----ETGVSPT---IQNRFGCTALHLACKFGCVD 67

Query: 125 ALRY 128
             +Y
Sbjct: 68  TAKY 71

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 47.2 bits (113), Expect = 9e-06
 Identities = 37/327 (11%), Positives = 73/327 (22%), Gaps = 90/327 (27%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVH--ALATINNVDVAK 86
            G+    +    ++ E+          E            G TA+H         +++ K
Sbjct: 110 RGQMPESLLNECDEREV---------NEIGSHV---KHCKGQTALHWCVGLGPEYLEMIK 157

Query: 87  TLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQT--AAISILSS 144
            LV        A       ++K  ETPL RA      EAL    + V       +   + 
Sbjct: 158 ILV-----QLGASPT---AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANK 209

Query: 145 KMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISL 204
           +    +   ++     +                    VE  ID    + +       + L
Sbjct: 210 QGNSHLHWAILINWEDV----------------AMRFVEMGID---VNMEDNEHTVPLYL 250

Query: 205 GLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTM 264
            +    +             + ++Q  K          Y        D    +       
Sbjct: 251 SVRAAMVLL----------TKELLQ--KTDVFLIQACPYHNGTTVLPDRVVWLDF----- 293

Query: 265 RILLFAVSNGIIEILEE-IRHKYPQTLDNVNEK---GQNILHVAIMYRQLEIFEI----- 315
             +  A      E+L+           D V      G              +  +     
Sbjct: 294 --VPAAADPSKQEVLQLLQEKL-----DEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPS 346

Query: 316 --IKEKMQLSLAEWALKIDNEGYTILH 340
             ++ +                     
Sbjct: 347 APVRTR------------SRSRARSSA 361

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 52.9 bits (127), Expect = 6e-08
 Identities = 21/137 (15%), Positives = 52/137 (37%), Gaps = 19/137 (13%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGR-LPVEKRLEALMQTDDNGNTAVHALATINNVDVAKT 87
           +     ++A + +  EL ++ L       +       TD +  TA+H   +  + ++ + 
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSLATR-------TDQDSRTALHWACSAGHTEIVEF 58

Query: 88  LVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMY 147
           L+           N    ++  G +PL+ AAS G  E ++     + + A ++ ++    
Sbjct: 59  LL-----QLGVPVN---DKDDAGWSPLHIAASAGXDEIVKAL---LVKGAHVNAVNQNGC 107

Query: 148 IAIWRQVIQGCPAIKKI 164
             +     +    I  +
Sbjct: 108 TPLHYAASKNRHEIAVM 124

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 44.9 bits (106), Expect = 3e-05
 Identities = 7/66 (10%), Positives = 24/66 (36%), Gaps = 8/66 (12%)

Query: 63  MQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGK 122
           M+   +     +   +    ++ + ++     ++ +        ++   T L+ A S G 
Sbjct: 1   MEGCVSNIMICNLAYSGKLDELKERIL-----ADKSLAT---RTDQDSRTALHWACSAGH 52

Query: 123 IEALRY 128
            E + +
Sbjct: 53  TEIVEF 58

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 51.7 bits (125), Expect = 7e-08
 Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 17/98 (17%)

Query: 29  NGECAIHVAAAMEDPELIKKFL--GRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAK 86
                I       +   ++ +L      + +        DD+G + +H         V +
Sbjct: 4   EFMDDIFTQCREGNAVAVRLWLDNTENDLNQG-------DDHGFSPLHWACREGRSAVVE 56

Query: 87  TLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
            L+        A  N   V N+  +TPL+ AAS G  +
Sbjct: 57  MLI-----MRGARIN---VMNRGDDTPLHLAASHGHRD 86

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 49.7 bits (120), Expect = 3e-07
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 11/75 (14%)

Query: 65  TDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
            +++GN  +H         VA+ LV     +N A  +   + NK GE P+ +A +  +  
Sbjct: 101 VNEHGNVPLHYACFWGQDQVAEDLV-----ANGALVS---ICNKYGEMPVDKAKAPLREL 152

Query: 125 ALRYFAEQ---VNQT 136
                 +    +N+ 
Sbjct: 153 LRERAEKMGQNLNRI 167

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 48.2 bits (116), Expect = 1e-06
 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 8/60 (13%)

Query: 65  TDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
            +   +T +H  A+  + D+ + L+        AD N     N+ G  PL+ A   G+ +
Sbjct: 68  MNRGDDTPLHLAASHGHRDIVQKLL-----QYKADIN---AVNEHGNVPLHYACFWGQDQ 119

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 39.7 bits (94), Expect = 8e-04
 Identities = 8/59 (13%), Positives = 18/59 (30%), Gaps = 7/59 (11%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
                  +       N    +  ++    + + D N     +  G +PL+ A   G+  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLD----NTENDLN---QGDDHGFSPLHWACREGRSA 53

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 52.5 bits (127), Expect = 9e-08
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 4/63 (6%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEA 125
           D++G+T +H      N+     LV    Q    + +   + N L +TPL+ A        
Sbjct: 6   DEDGDTPLHIAVVQGNLPAVHRLVNLF-QQGGRELD---IYNNLRQTPLHLAVITTLPSV 61

Query: 126 LRY 128
           +R 
Sbjct: 62  VRL 64

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 48.6 bits (117), Expect = 1e-06
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 8/64 (12%)

Query: 65  TDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
              +G++A+H+ +    + + +TLV      + AD +   ++N   +TPL  A S   I+
Sbjct: 179 QMYSGSSALHSASGRGLLPLVRTLV-----RSGADSS---LKNCHNDTPLMVARSRRVID 230

Query: 125 ALRY 128
            LR 
Sbjct: 231 ILRG 234

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 47.8 bits (115), Expect = 3e-06
 Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 11/97 (11%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGR-LPVEKRLEALMQTDDNGNTAVHALATINNVDVAKT 87
           +G+ A H+A     P  ++  L    P    LEA    + +G TA+H        +  + 
Sbjct: 78  HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEA---RNYDGLTALHVAVNTECQETVQL 134

Query: 88  LVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
           L+        AD +   V+ K G +PL  A     + 
Sbjct: 135 LL-----ERGADID--AVDIKSGRSPLIHAVENNSLS 164

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 47.8 bits (115), Expect = 3e-06
 Identities = 17/102 (16%), Positives = 33/102 (32%), Gaps = 14/102 (13%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGRLPVEK--RLEALMQTDDNGNTAVHALATINNVDVAK 86
           +G+  +H+A    +       L  L  +    L+     ++   T +H         V +
Sbjct: 8   DGDTPLHIAVVQGNLP-AVHRLVNLFQQGGRELDI---YNNLRQTPLHLAVITTLPSVVR 63

Query: 87  TLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRY 128
            LV     +  A        ++ G+T  + A        LR 
Sbjct: 64  LLV-----TAGASPM---ALDRHGQTAAHLACEHRSPTCLRA 97

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 44.0 bits (105), Expect = 5e-05
 Identities = 19/100 (19%), Positives = 42/100 (42%), Gaps = 13/100 (13%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTL 88
           +G  A+HVA   E  E ++  L    +E+  +       +G + +      N++ + + L
Sbjct: 115 DGLTALHVAVNTECQETVQ-LL----LERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL 169

Query: 89  VEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRY 128
           +      + A+ N    +   G + L+ A+  G +  +R 
Sbjct: 170 L-----QHGANVN---AQMYSGSSALHSASGRGLLPLVRT 201

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 44.0 bits (105), Expect = 5e-05
 Identities = 16/102 (15%), Positives = 33/102 (32%), Gaps = 14/102 (13%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGR-LPVEKRLEALMQTDDNGNTAVHALATINNVDVAKT 87
             +  +H+A     P +++  +                D +G TA H      +    + 
Sbjct: 45  LRQTPLHLAVITTLPSVVRLLVTAGASPMAL-------DRHGQTAAHLACEHRSPTCLRA 97

Query: 88  LVEFSKQSNDADKNPLV-VENKLGETPLYRAASVGKIEALRY 128
           L+      + A     +   N  G T L+ A +    E ++ 
Sbjct: 98  LL-----DSAAPGTLDLEARNYDGLTALHVAVNTECQETVQL 134

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 17/101 (16%), Positives = 39/101 (38%), Gaps = 16/101 (15%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGRLP-VEKRLEALMQTDDNGNTAVHALATINNVDVAKT 87
                +  ++   + +L+++ +  +             +D G TA+H      + ++ K 
Sbjct: 36  LPLALLLDSSLEGEFDLVQRIIYEVDDPSLP-------NDEGITALHNAVCAGHTEIVKF 88

Query: 88  LVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRY 128
           LV         + N     +  G TPL+ AAS   ++  ++
Sbjct: 89  LV-----QFGVNVN---AADSDGWTPLHCAASCNNVQVCKF 121

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 49.9 bits (120), Expect = 5e-07
 Identities = 6/67 (8%), Positives = 19/67 (28%), Gaps = 9/67 (13%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEA 125
           +  G  ++      N        +     ++          N L    L  ++  G+ + 
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERI-----AHGMRVK----FNPLPLALLLDSSLEGEFDL 52

Query: 126 LRYFAEQ 132
           ++    +
Sbjct: 53  VQRIIYE 59

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 5/67 (7%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEA 125
           D +G T +H  A+ NNV V K LV      + A    +   +             G  + 
Sbjct: 100 DSDGWTPLHCAASCNNVQVCKFLV-----ESGAAVFAMTYSDMQTAADKCEEMEEGYTQC 154

Query: 126 LRYFAEQ 132
            ++    
Sbjct: 155 SQFLYGV 161

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 51.0 bits (123), Expect = 1e-07
 Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 11/87 (12%)

Query: 64  QTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKI 123
           +    G TA+H  A     +V + LV        AD     VE++ G T L  A  + K 
Sbjct: 105 RDMRGGLTALHMAAGYVRPEVVEALV-----ELGADIE---VEDERGLTALELAREILKT 156

Query: 124 EALRY---FAEQVNQTAAISILSSKMY 147
                   F  ++     I++L  +++
Sbjct: 157 TPKGNPMQFGRRIGLEKVINVLEGQVF 183

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 47.1 bits (113), Expect = 2e-06
 Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 14/100 (14%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTL 88
             E     AA   D + + + L    V+         D+NG TA+  +A + +    + L
Sbjct: 43  EYETPWWTAARKADEQALSQLLEDRDVDAV-------DENGRTALLFVAGLGSDKCVRLL 95

Query: 89  VEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRY 128
                    AD +    + + G T L+ AA   + E +  
Sbjct: 96  A-----EAGADLD--HRDMRGGLTALHMAAGYVRPEVVEA 128

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 18/104 (17%), Positives = 28/104 (26%), Gaps = 24/104 (23%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQ----TDDNGNTAVHALATINNVDV 84
            GE A+      +D        G  P                    T     A   +   
Sbjct: 11  AGEGAMEYLIEWKD--------GHSPS---WVPSSYIAADVVSEYETPWWTAARKADEQA 59

Query: 85  AKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRY 128
              L+E      D D +     ++ G T L   A +G  + +R 
Sbjct: 60  LSQLLE------DRDVD---AVDENGRTALLFVAGLGSDKCVRL 94

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 48.5 bits (117), Expect = 1e-07
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 8/63 (12%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEA 125
           D NG T +H  A   +++V K L+        AD N    ++K G TPL+ AA  G +E 
Sbjct: 32  DKNGRTPLHLAARNGHLEVVKLLL-----EAGADVN---AKDKNGRTPLHLAARNGHLEV 83

Query: 126 LRY 128
           ++ 
Sbjct: 84  VKL 86

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 44.7 bits (107), Expect = 4e-06
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 8/61 (13%)

Query: 68  NGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALR 127
           NG T +H  A   +++V K L+        AD N    ++K G TPL+ AA  G +E ++
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLL-----EAGADVN---AKDKNGRTPLHLAARNGHLEVVK 52

Query: 128 Y 128
            
Sbjct: 53  L 53

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 50.5 bits (122), Expect = 2e-07
 Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 13/96 (13%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTL 88
             +  +  AA   D E +KK      V  R       +   +T +H  A  N V V + L
Sbjct: 7   EADRQLLEAAKAGDVETVKKLCTVQSVNCR-----DIEGRQSTPLHFAAGYNRVSVVEYL 61

Query: 89  VEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
           +      + AD +    ++K G  PL+ A S G  E
Sbjct: 62  L-----QHGADVH---AKDKGGLVPLHNACSYGHYE 89

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 48.5 bits (117), Expect = 6e-07
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 8/63 (12%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEA 125
           D  G   +H   +  + +VA+ LV      + A  N   V +    TPL+ AA+ GK E 
Sbjct: 72  DKGGLVPLHNACSYGHYEVAELLV-----KHGAVVN---VADLWKFTPLHEAAAKGKYEI 123

Query: 126 LRY 128
            + 
Sbjct: 124 CKL 126

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 42.4 bits (101), Expect = 9e-05
 Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 7/59 (11%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
           +   +  +   A   +V+  K L          +            TPL+ AA   ++ 
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCT----VQSVNCR---DIEGRQSTPLHFAAGYNRVS 56

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 42.0 bits (100), Expect = 1e-04
 Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 8/53 (15%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAA 118
           D    T +H  A     ++ K L+      + AD      +N+ G TPL    
Sbjct: 105 DLWKFTPLHEAAAKGKYEICKLLL-----QHGADPT---KKNRDGNTPLDLVK 149

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 18/103 (17%)

Query: 28  FNGECAIHVAAAMEDPELIKKFLGRL--PVEKRLEALMQTDDNGNTAVHALATINNVDVA 85
            N    +  AA   + E++++ +  +  P +         ++ G TA+H      N  + 
Sbjct: 19  LNPLVLLLDAALTGELEVVQQAVKEMNDPSQP--------NEEGITALHNAICGANYSIV 70

Query: 86  KTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRY 128
             L+     +  A+ N     +  G TPL+ AAS         
Sbjct: 71  DFLI-----TAGANVN---SPDSHGWTPLHCAASCNDTVICMA 105

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 9/69 (13%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASV--GKI 123
           D +G T +H  A+ N+  +   LV      + A           G T   +      G  
Sbjct: 84  DSHGWTPLHCAASCNDTVICMALV-----QHGAAIF--ATTLSDGATAFEKCDPYREGYA 136

Query: 124 EALRYFAEQ 132
           +   Y A+ 
Sbjct: 137 DCATYLADV 145

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 49.3 bits (119), Expect = 2e-07
 Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 16/101 (15%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGR-LPVEKRLEALMQTDDNGNTAVHALATINNVDVAKT 87
            GE  +H+A+   D   ++  L        +       D  G T +H      ++ V + 
Sbjct: 9   RGETLLHIASIKGDIPSVEYLLQNGSDPNVK-------DHAGWTPLHEACNHGHLKVVEL 61

Query: 88  LVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRY 128
           L+      + A  N         ++PL+ AA  G ++ ++ 
Sbjct: 62  LL-----QHKALVN---TTGYQNDSPLHDAAKNGHVDIVKL 94

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 49.3 bits (119), Expect = 2e-07
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 8/74 (10%)

Query: 65  TDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
           T    ++ +H  A   +VD+ K L+     S  A +N     N  G  P+          
Sbjct: 72  TGYQNDSPLHDAAKNGHVDIVKLLL-----SYGASRN---AVNIFGLRPVDYTDDESMKS 123

Query: 125 ALRYFAEQVNQTAA 138
            L    +  + +A+
Sbjct: 124 LLLLPEKNESSSAS 137

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 48.6 bits (117), Expect = 4e-07
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 8/60 (13%)

Query: 65  TDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
           T+  G T +H  +   ++   + L+      N +D N   V++  G TPL+ A + G ++
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLL-----QNGSDPN---VKDHAGWTPLHEACNHGHLK 57

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 52.1 bits (126), Expect = 2e-07
 Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 16/102 (15%)

Query: 28  FNGECAIHVAAAMEDPELIKKFLGR-LPVEKRLEALMQTDDNGNTAVHALATINNVDVAK 86
           F+       A +  D E + + L R   +          + +G TA+H     +NVD+ K
Sbjct: 38  FDDGAVFLAACSSGDTEEVLRLLERGADINYA-------NVDGLTALHQACIDDNVDMVK 90

Query: 87  TLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRY 128
            LV      N A+ N     +  G  PL+ AAS G ++   Y
Sbjct: 91  FLV-----ENGANIN---QPDNEGWIPLHAAASCGYLDIAEY 124

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 50.6 bits (122), Expect = 6e-07
 Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 22/94 (23%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGK--- 122
           D+ G   +HA A+   +D+A+ L+     S  A        N  G+TPL  A        
Sbjct: 103 DNEGWIPLHAAASCGYLDIAEYLI-----SQGAHVG---AVNSEGDTPLDIAEEEAMEEL 154

Query: 123 -----------IEALRYFAEQVNQTAAISILSSK 145
                      IEA R   E++    A   L+S 
Sbjct: 155 LQNEVNRQGVDIEAARKEEERIMLRDARQWLNSG 188

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 46.0 bits (110), Expect = 2e-05
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 8/63 (12%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEA 125
             +G TA+H  A     +V K L+         D N   +++  G TPL+ AA  GK EA
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLI-----QARYDVN---IKDYDGWTPLHAAAHWGKEEA 247

Query: 126 LRY 128
            R 
Sbjct: 248 CRI 250

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 8/55 (14%)

Query: 65  TDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAAS 119
            D +G T +HA A     +  + LV      N  D       NK+G+T    A  
Sbjct: 228 KDYDGWTPLHAAAHWGKEEACRILV-----ENLCDME---AVNKVGQTAFDVADE 274

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 50.9 bits (123), Expect = 2e-07
 Identities = 21/104 (20%), Positives = 44/104 (42%), Gaps = 16/104 (15%)

Query: 26  RTFNGECAIHVAAAMEDPELIKKFLGR-LPVEKRLEALMQTDDNGNTAVHALATINNVDV 84
           +T+     +  A   +  ++ +        V++        D  GNT ++     N++++
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEV-------DTEGNTPLNIAVHNNDIEI 54

Query: 85  AKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRY 128
           AK L+        AD N   ++N + ++P   A + G+ E L Y
Sbjct: 55  AKALI-----DRGADIN---LQNSISDSPYLYAGAQGRTEILAY 90

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 42.8 bits (102), Expect = 9e-05
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 7/60 (11%)

Query: 65  TDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
            +  G  A+   A   ++D  K L+E        D +    +N  G T L  A  + +  
Sbjct: 102 HNRYGGNALIPAAEKGHIDNVKLLLE----DGREDID---FQNDFGYTALIEAVGLREGN 154

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 40.5 bits (96), Expect = 5e-04
 Identities = 9/64 (14%), Positives = 21/64 (32%), Gaps = 9/64 (14%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDA-DKNPLVVENKLGETPLYRAASVGKIE 124
           +   ++           ++   ++      +   D N     N+ G   L  AA  G I+
Sbjct: 69  NSISDSPYLYAGAQGRTEILAYML-----KHATPDLN---KHNRYGGNALIPAAEKGHID 120

Query: 125 ALRY 128
            ++ 
Sbjct: 121 NVKL 124

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 40.1 bits (95), Expect = 7e-04
 Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 26/109 (23%)

Query: 29  NGECAIHVAAAMEDPE----LIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINN--- 81
            G  A+  AA     +    L++   GR  ++ +       +D G TA+     +     
Sbjct: 105 YGGNALIPAAEKGHIDNVKLLLED--GREDIDFQ-------NDFGYTALIEAVGLREGNQ 155

Query: 82  --VDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRY 128
              D+ K L+      N AD++   +++  G T +  A   G  E  + 
Sbjct: 156 LYQDIVKLLM-----ENGADQS---IKDNSGRTAMDYANQKGYTEISKI 196

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 49.7 bits (120), Expect = 2e-07
 Identities = 19/101 (18%), Positives = 41/101 (40%), Gaps = 17/101 (16%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGR-LPVEKRLEALMQTDDNGNTAVHALATINNVDVAKT 87
                +  AAA  D E +   L   + V  +       +  G TA+     + N ++A+ 
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNVNAQ-------NGFGRTALQV-MKLGNPEIARR 55

Query: 88  LVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRY 128
           L+        A+ +   ++++ G   ++ AA  G ++ L+ 
Sbjct: 56  LL-----LRGANPD---LKDRTGFAVIHDAARAGFLDTLQT 88

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 48.5 bits (117), Expect = 6e-07
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 12/73 (16%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEA 125
           D  G   +H  A    +D  +TL+        AD N   +E+  G  PL+ AA  G +  
Sbjct: 67  DRTGFAVIHDAARAGFLDTLQTLL-----EFQADVN---IEDNEGNLPLHLAAKEGHLRV 118

Query: 126 LRYF----AEQVN 134
           + +     A  V 
Sbjct: 119 VEFLVKHTASNVG 131

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 42.4 bits (101), Expect = 7e-05
 Identities = 8/53 (15%), Positives = 19/53 (35%), Gaps = 8/53 (15%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAA 118
            +     + + A   +++   +L+      N+ + N    +N  G T L    
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLL-----QNNVNVN---AQNGFGRTALQVMK 46

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 41.6 bits (99), Expect = 1e-04
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 9/60 (15%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDA-DKNPLVVENKLGETPLYRAASVGKIE 124
           D+ GN  +H  A   ++ V + LV      + A +       N  G+T    A   G+ E
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLV-----KHTASNVG---HRNHKGDTACDLARLYGRNE 151

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 48.5 bits (117), Expect = 3e-07
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 8/64 (12%)

Query: 65  TDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
           T + G   +H  A    +++ + L+        AD N     +K   TPL  A   G + 
Sbjct: 36  TLEGGRKPLHYAADCGQLEILEFLL-----LKGADIN---APDKHHITPLLSAVYEGHVS 87

Query: 125 ALRY 128
            ++ 
Sbjct: 88  CVKL 91

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 45.9 bits (110), Expect = 3e-06
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 8/61 (13%)

Query: 68  NGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALR 127
             +          ++D  K  V     +   D N      + G  PL+ AA  G++E L 
Sbjct: 6   MCDKEFMWALKNGDLDEVKDYV-----AKGEDVN---RTLEGGRKPLHYAADCGQLEILE 57

Query: 128 Y 128
           +
Sbjct: 58  F 58

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 42.8 bits (102), Expect = 3e-05
 Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 8/60 (13%)

Query: 65  TDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
            D +  T + +     +V   K L+     S  ADK    V+   G T      +     
Sbjct: 69  PDKHHITPLLSAVYEGHVSCVKLLL-----SKGADKT---VKGPDGLTAFEATDNQAIKA 120

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 48.1 bits (116), Expect = 3e-07
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 8/63 (12%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEA 125
             +GNT +H  A   + ++ K L+     +  AD N     +K G TP + A   G  E 
Sbjct: 39  SKDGNTPLHLAAKNGHAEIVKLLL-----AKGADVN---ARSKDGNTPEHLAKKNGHHEI 90

Query: 126 LRY 128
           ++ 
Sbjct: 91  VKL 93

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 47.8 bits (115), Expect = 5e-07
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 8/63 (12%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEA 125
             +GNT +H  A   + +  K L+     S  AD N     +K G TPL+ AA  G  E 
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLL-----SKGADVN---ARSKDGNTPLHLAAKNGHAEI 57

Query: 126 LRY 128
           ++ 
Sbjct: 58  VKL 60

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 40.1 bits (95), Expect = 2e-04
 Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 8/50 (16%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLY 115
             +GNT  H      + ++ K L      +  AD N     +       +
Sbjct: 72  SKDGNTPEHLAKKNGHHEIVKLLD-----AKGADVN---ARSWGSSHHHH 113

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 50.1 bits (121), Expect = 4e-07
 Identities = 18/102 (17%), Positives = 41/102 (40%), Gaps = 17/102 (16%)

Query: 29  NGECAIHVAAAMEDPELIKKFL--GRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAK 86
            G   +H A + +   + +  +      ++ R         +G T +   A +    + +
Sbjct: 57  MGRTPLHAAVSADAQGVFQILIRNRATDLDAR-------MHDGTTPLILAARLAVEGMLE 109

Query: 87  TLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRY 128
            L+     ++ AD N     + LG++ L+ AA+V  ++A   
Sbjct: 110 DLI-----NSHADVN---AVDDLGKSALHWAAAVNNVDAAVV 143

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 49.3 bits (119), Expect = 8e-07
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 12/75 (16%)

Query: 64  QTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKI 123
           QTD  G TA+H  A  +  D AK L+        AD N   +++ +G TPL+ A S    
Sbjct: 20  QTDRTGETALHLAARYSRSDAAKRLL-----EASADAN---IQDNMGRTPLHAAVSADAQ 71

Query: 124 EALRYF----AEQVN 134
              +      A  ++
Sbjct: 72  GVFQILIRNRATDLD 86

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 48.6 bits (117), Expect = 1e-06
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 8/59 (13%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
           DD G +A+H  A +NNVD A  L+      N A+K+   ++N   ETPL+ AA  G  E
Sbjct: 122 DDLGKSALHWAAAVNNVDAAVVLL-----KNGANKD---MQNNREETPLFLAAREGSYE 172

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 45.9 bits (110), Expect = 1e-05
 Identities = 9/63 (14%), Positives = 24/63 (38%), Gaps = 8/63 (12%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEA 125
           ++   T +   A   + + AK L+      + A+++   + + +   P   A      + 
Sbjct: 155 NNREETPLFLAAREGSYETAKVLL-----DHFANRD---ITDHMDRLPRDIAQERMHHDI 206

Query: 126 LRY 128
           +R 
Sbjct: 207 VRL 209

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 50.6 bits (121), Expect = 4e-07
 Identities = 35/123 (28%), Positives = 49/123 (39%), Gaps = 14/123 (11%)

Query: 14  FAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAV 73
           F ++T      Y    GE  + +AA      ++K  L        + A    D  GNT +
Sbjct: 135 FFKKTKGRPGFYF---GELPLSLAACTNQLAIVKFLLQNSWQPADISA---RDSVGNTVL 188

Query: 74  HALATINNVDVAKTLVEFSKQ----SNDADKNPLV----VENKLGETPLYRAASVGKIEA 125
           HAL  + +  V  T    S         A  +P +    + N+ G TPL  AAS GKI  
Sbjct: 189 HALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGV 248

Query: 126 LRY 128
           L Y
Sbjct: 249 LAY 251

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 44.8 bits (106), Expect = 4e-05
 Identities = 24/130 (18%), Positives = 38/130 (29%), Gaps = 24/130 (18%)

Query: 29  NGECAIHVAAAME---DPELIKKFLGRLPVEKRLEAL-----MQTDDNGNTAVHALATIN 80
            G+  +  A         + I   L        L+         +   G TA+H      
Sbjct: 53  TGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERR 112

Query: 81  NVDVAKTLVEFSKQSNDADKN-----------PLVVENKLGETPLYRAASVGKIEALRYF 129
           N+ +   LV      N AD                     GE PL  AA   ++  +++ 
Sbjct: 113 NMTLVTLLV-----ENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFL 167

Query: 130 AEQVNQTAAI 139
            +   Q A I
Sbjct: 168 LQNSWQPADI 177

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 39/308 (12%), Positives = 83/308 (26%), Gaps = 86/308 (27%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQ--SNDADKNPLVVENKLGETPLYRA---ASV 120
                 ++      +N    ++L+ F ++      D      + + G+T L +A      
Sbjct: 10  RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSE--FKDPETGKTCLLKAMLNLHN 67

Query: 121 GKIEALRYFAEQVNQTAAISILSSKMY------------IAIWRQVIQGCPAIKKIWEKK 168
           G+ + +    +   +T ++    +  Y            IAI R+               
Sbjct: 68  GQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERR--------------- 112

Query: 169 QIHKKAVALVKMLVEKRID----DCATHEKPTPGVTEISLGL-------GKGNIEKKVVD 217
             +     LV +LVE   D          K T G      G            +      
Sbjct: 113 --NM---TLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAI---- 163

Query: 218 VSAGEWVELMIQVKKGCTNKAHVDQYPQ-----AVDQENDTTKDMTSSMRTMRILLFAVS 272
                 V+ ++Q      + +  D          V+  ++T  +          +L   +
Sbjct: 164 ------VKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGA 217

Query: 273 NGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKID 332
                      H   +  +  N KG   L +A    ++ +   I ++            +
Sbjct: 218 KL---------HPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR------------E 256

Query: 333 NEGYTILH 340
                  H
Sbjct: 257 IHEPECRH 264

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 51.3 bits (124), Expect = 4e-07
 Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 21/104 (20%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGRLP----VEKRLEALMQTDDNGNTAVHALATINNVDV 84
             +  +  AA   + E +   L   P               D   +T +H  A  N V +
Sbjct: 23  YKKDELLEAARSGNEEKLMALL--TPLNVNCHAS-------DGRKSTPLHLAAGYNRVRI 73

Query: 85  AKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRY 128
            + L+      + AD +    ++K G  PL+ A S G  E    
Sbjct: 74  VQLLL-----QHGADVH---AKDKGGLVPLHNACSYGHYEVTEL 109

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 48.3 bits (116), Expect = 4e-06
 Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 16/101 (15%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGRL-PVEKRLEALMQTDDNGNTAVHALATINNVDVAKT 87
                +H+AA      +++  L     V  +       D  G   +H   +  + +V + 
Sbjct: 57  RKSTPLHLAAGYNRVRIVQLLLQHGADVHAK-------DKGGLVPLHNACSYGHYEVTEL 109

Query: 88  LVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRY 128
           L+      + A  N     +    TPL+ AAS  ++E    
Sbjct: 110 LL-----KHGACVN---AMDLWQFTPLHEAASKNRVEVCSL 142

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 47.5 bits (114), Expect = 6e-06
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 8/63 (12%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEA 125
           D    T +H  A+ N V+V   L+     S+ AD     + N  G++ +  A +    E 
Sbjct: 121 DLWQFTPLHEAASKNRVEVCSLLL-----SHGADPT---LVNCHGKSAVDMAPTPELRER 172

Query: 126 LRY 128
           L Y
Sbjct: 173 LTY 175

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 47.5 bits (114), Expect = 6e-06
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 8/64 (12%)

Query: 65  TDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
            + +  T +H  A   + DV + L       + A  N     + LG+T L+RAA  G ++
Sbjct: 243 KNKDFMTPLHVAAERAHNDVMEVLH-----KHGAKMN---ALDSLGQTALHRAALAGHLQ 294

Query: 125 ALRY 128
             R 
Sbjct: 295 TCRL 298

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 8/58 (13%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKI 123
           D  G TA+H  A   ++   + L+     S  +D +   + +  G T         + 
Sbjct: 277 DSLGQTALHRAALAGHLQTCRLLL-----SYGSDPS---IISLQGFTAAQMGNEAVQQ 326

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 40.9 bits (97), Expect = 7e-04
 Identities = 9/65 (13%), Positives = 22/65 (33%), Gaps = 9/65 (13%)

Query: 65  TDDNGNTAVHALATINNVD-VAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKI 123
           T +     +   A   N + +   L        + + +     +    TPL+ AA   ++
Sbjct: 20  TGEYKKDELLEAARSGNEEKLMALLT-----PLNVNCH---ASDGRKSTPLHLAAGYNRV 71

Query: 124 EALRY 128
             ++ 
Sbjct: 72  RIVQL 76

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 50.2 bits (121), Expect = 5e-07
 Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 20/118 (16%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALM--------QTDDNGNTAVHALATIN 80
           +G   + +A+                    +   +        QTD  G TA+H  A  +
Sbjct: 9   DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYS 68

Query: 81  NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYF----AEQVN 134
             D AK L+        AD N   +++ +G TPL+ A S       +      A  ++
Sbjct: 69  RSDAAKRLL-----EASADAN---IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 118

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 50.2 bits (121), Expect = 5e-07
 Identities = 18/102 (17%), Positives = 41/102 (40%), Gaps = 17/102 (16%)

Query: 29  NGECAIHVAAAMEDPELIKKFL--GRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAK 86
            G   +H A + +   + +  +      ++ R         +G T +   A +    + +
Sbjct: 89  MGRTPLHAAVSADAQGVFQILIRNRATDLDAR-------MHDGTTPLILAARLAVEGMLE 141

Query: 87  TLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRY 128
            L+     ++ AD N     + LG++ L+ AA+V  ++A   
Sbjct: 142 DLI-----NSHADVN---AVDDLGKSALHWAAAVNNVDAAVV 175

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 49.8 bits (120), Expect = 8e-07
 Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 8/64 (12%)

Query: 65  TDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
            DD G +A+H  A +NNVD A  L+      N A+K+   ++N   ETPL+ AA  G  E
Sbjct: 153 VDDLGKSALHWAAAVNNVDAAVVLL-----KNGANKD---MQNNREETPLFLAAREGSYE 204

Query: 125 ALRY 128
             + 
Sbjct: 205 TAKV 208

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 44.8 bits (107), Expect = 3e-05
 Identities = 9/63 (14%), Positives = 24/63 (38%), Gaps = 8/63 (12%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEA 125
           ++   T +   A   + + AK L+      + A+++   + + +   P   A      + 
Sbjct: 187 NNREETPLFLAAREGSYETAKVLL-----DHFANRD---ITDHMDRLPRDIAQERMHHDI 238

Query: 126 LRY 128
           +R 
Sbjct: 239 VRL 241

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 49.9 bits (120), Expect = 5e-07
 Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEF--SKQSNDADKNPLVVENKLGETPLYRAASVGKI 123
           D  GNT +H L    N   A  +     S    D  K+  +V N  G TP   A   G I
Sbjct: 151 DSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNI 210

Query: 124 E 124
            
Sbjct: 211 V 211

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 18/104 (17%)

Query: 30  GECAIHVAAAMEDPELIKKFL---GRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAK 86
            E  + +AA   D + + K L   G    ++           G TA+H  A  +N++ A 
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQR--------GAMGETALHIAALYDNLEAAM 54

Query: 87  TLVEFSKQSNDADKNPLVV--ENKLGETPLYRAASVGKIEALRY 128
            L+         +     +  E   G+T L+ A     +  +R 
Sbjct: 55  VLM-----EAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRA 93

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 47.2 bits (113), Expect = 4e-06
 Identities = 29/113 (25%), Positives = 43/113 (38%), Gaps = 16/113 (14%)

Query: 26  RTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVA 85
           R   GE A+H+AA  ++ E     +   P E   E +      G TA+H      NV++ 
Sbjct: 33  RGAMGETALHIAALYDNLEAAMVLMEAAP-ELVFEPMTSELYEGQTALHIAVINQNVNLV 91

Query: 86  KTLVEFSKQSNDADKN----------PLVVENKLGETPLYRAASVGKIEALRY 128
           + L+     +  A  +                  GE PL  AA VG  E +R 
Sbjct: 92  RALL-----ARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRL 139

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 43.7 bits (104), Expect = 5e-05
 Identities = 17/113 (15%), Positives = 36/113 (31%), Gaps = 15/113 (13%)

Query: 26  RTFNGECAIHVAAAMEDPELIKKFL--G-----RLPVEKRLEALMQTDDNGNTAVHALAT 78
             + G+ A+H+A   ++  L++  L  G     R                G   +   A 
Sbjct: 71  ELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAAC 130

Query: 79  INNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAE 131
           + + ++ + L+      + AD      ++ LG T L+                
Sbjct: 131 VGSEEIVRLLI-----EHGADIR---AQDSLGNTVLHILILQPNKTFACQMYN 175

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 49.7 bits (120), Expect = 6e-07
 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 17/102 (16%)

Query: 29  NGECAIHVAAAMEDPELIKKFL--GRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAK 86
            G   +H+AA     E+++  L  G++ V  +       DD G T +       +VD+ K
Sbjct: 76  EGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQ-------DDGGWTPMIWATEYKHVDLVK 128

Query: 87  TLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRY 128
            L+     S  +D N   + +      L+ AA  G ++    
Sbjct: 129 LLL-----SKGSDIN---IRDNEENICLHWAAFSGCVDIAEI 162

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 48.9 bits (118), Expect = 1e-06
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 8/65 (12%)

Query: 64  QTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKI 123
               N  + +HA A   +VD+   LV        A+ +     ++   TPL  AA    +
Sbjct: 6   MEHQNKRSPLHAAAEAGHVDICHMLV-----QAGANID---TCSEDQRTPLMEAAENNHL 57

Query: 124 EALRY 128
           EA++Y
Sbjct: 58  EAVKY 62

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 48.6 bits (117), Expect = 2e-06
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 8/63 (12%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEA 125
           + +G++ +H  A  N  D     +     S D+D     ++NK GETPL  A+   ++ +
Sbjct: 174 NIHGDSPLHIAARENRYDCVVLFL-----SRDSDVT---LKNKEGETPLQCASLNSQVWS 225

Query: 126 LRY 128
              
Sbjct: 226 ALQ 228

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 47.8 bits (115), Expect = 2e-06
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 8/64 (12%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEA 125
           D+  N  +H  A    VD+A+ L+     +   D +     N  G++PL+ AA   + + 
Sbjct: 141 DNEENICLHWAAFSGCVDIAEILL-----AAKCDLH---AVNIHGDSPLHIAARENRYDC 192

Query: 126 LRYF 129
           +  F
Sbjct: 193 VVLF 196

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 47.8 bits (115), Expect = 2e-06
 Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 20/111 (18%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGR-LPVEKRLEALMQTDDNGNTAVHALATINNVDVAKT 87
           N    +H AA     ++    +     ++          ++  T +   A  N+++  K 
Sbjct: 10  NKRSPLHAAAEAGHVDICHMLVQAGANIDTC-------SEDQRTPLMEAAENNHLEAVKY 62

Query: 88  LVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYF----AEQVN 134
           L+        A  +    ++  G T L+ AA  G  E ++Y        VN
Sbjct: 63  LI-----KAGALVD---PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVN 105

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 42.0 bits (100), Expect = 2e-04
 Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 17/102 (16%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGR-LPVEKRLEALMQTDDNGNTAVHALATINNVDVAKT 87
           +    +  AA     E +K  +     V+ +       D  G+T +H  A   + +V + 
Sbjct: 43  DQRTPLMEAAENNHLEAVKYLIKAGALVDPK-------DAEGSTCLHLAAKKGHYEVVQY 95

Query: 88  LVEFSKQSNDA-DKNPLVVENKLGETPLYRAASVGKIEALRY 128
           L+     SN   D N    ++  G TP+  A     ++ ++ 
Sbjct: 96  LL-----SNGQMDVN---CQDDGGWTPMIWATEYKHVDLVKL 129

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 49.7 bits (120), Expect = 7e-07
 Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 15/101 (14%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGR-LPVEKRLEALMQTDDNGNTAVHALATINNVDVAKT 87
                I  A      E  ++ +     V +        D    T +H  A  N +D+ K 
Sbjct: 8   YSTWDIVKATQYGIYERCRELVEAGYDVRQP-------DKENVTLLHWAAINNRIDLVKY 60

Query: 88  LVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRY 128
            +     S  A  +   +   L  TPL+ A   G +  +  
Sbjct: 61  YI-----SKGAIVD--QLGGDLNSTPLHWATRQGHLSMVVQ 94

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 48.6 bits (117), Expect = 1e-06
 Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 12/100 (12%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTL 88
           NG   +  AA         + L    +   +   +    + NTA+H      N  V   L
Sbjct: 141 NGMTPLMWAAYRTHSVDPTRLL----LTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLL 196

Query: 89  VEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRY 128
           +        A+ +    +N  GE+ L  A     +  + +
Sbjct: 197 L-----EAGANVD---AQNIKGESALDLAKQRKNVWMINH 228

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 47.4 bits (114), Expect = 3e-06
 Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 8/65 (12%)

Query: 64  QTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKI 123
             DD     +         +  + LV         D       +K   T L+ AA   +I
Sbjct: 4   HIDDYSTWDIVKATQYGIYERCRELV-----EAGYDVR---QPDKENVTLLHWAAINNRI 55

Query: 124 EALRY 128
           + ++Y
Sbjct: 56  DLVKY 60

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 44.3 bits (106), Expect = 4e-05
 Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 13/100 (13%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTL 88
                +H AA     +L+K +     + K         D  +T +H      ++ +   L
Sbjct: 41  ENVTLLHWAAINNRIDLVK-YY----ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQL 95

Query: 89  VEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRY 128
           +        AD +   + +  G + ++ AA  G    + Y
Sbjct: 96  M-----KYGADPS---LIDGEGCSCIHLAAQFGHTSIVAY 127

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 43.6 bits (104), Expect = 7e-05
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 8/56 (14%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVG 121
           D  G + +H  A   +  +   L+     +   D +   + ++ G TPL  AA   
Sbjct: 106 DGEGCSCIHLAAQFGHTSIVAYLI-----AKGQDVD---MMDQNGMTPLMWAAYRT 153

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 49.8 bits (119), Expect = 7e-07
 Identities = 25/129 (19%), Positives = 41/129 (31%), Gaps = 23/129 (17%)

Query: 29  NGECAIHVAAAME---DPELIKKFLGRLPVEKRLEALMQT-----DDNGNTAVHALATIN 80
            G+  +  A           I   L         + L+          G++A+H      
Sbjct: 42  TGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKR 101

Query: 81  NVDVAKTLVEFSKQSNDADKN----------PLVVENKLGETPLYRAASVGKIEALRYFA 130
           ++   K LVE     N AD +                  GE PL  AA   + + + Y  
Sbjct: 102 SLQCVKLLVE-----NGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL 156

Query: 131 EQVNQTAAI 139
           E  +Q A++
Sbjct: 157 ENPHQPASL 165

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 32/129 (24%), Positives = 47/129 (36%), Gaps = 27/129 (20%)

Query: 27  TFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATI------- 79
            + GE  + +AA  +  +++   L        LEA   TD  GNT +HAL  I       
Sbjct: 133 FYFGELPLSLAACTKQWDVVTYLLENPHQPASLEA---TDSLGNTVLHALVMIADNSPEN 189

Query: 80  ---------NNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFA 130
                      + +   L           +    + N  G TPL  AA  GKIE  R+  
Sbjct: 190 SALVIHMYDGLLQMGARLC-----PTVQLEE---ISNHQGLTPLKLAAKEGKIEIFRHIL 241

Query: 131 EQVNQTAAI 139
           ++    AA 
Sbjct: 242 QREFSGAAA 250

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 43.2 bits (102), Expect = 9e-05
 Identities = 18/104 (17%), Positives = 30/104 (28%), Gaps = 12/104 (11%)

Query: 26  RTFNGECAIHVAAAMEDPELIKKFLG-------RLPVEKRLEALMQTDDNGNTAVHALAT 78
             + G  A+H+A      + +K  +        R       +        G   +   A 
Sbjct: 86  EFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAAC 145

Query: 79  INNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGK 122
               DV   L+E   Q   A        + LG T L+    +  
Sbjct: 146 TKQWDVVTYLLENPHQ--PASLE---ATDSLGNTVLHALVMIAD 184

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 47.8 bits (115), Expect = 7e-07
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 8/59 (13%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
           D+ G T ++      ++++ + L+      N AD N     + +G TPL+ AA +G +E
Sbjct: 44  DEYGLTPLYLATAHGHLEIVEVLL-----KNGADVN---AVDAIGFTPLHLAAFIGHLE 94

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 46.6 bits (112), Expect = 2e-06
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 60  EALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAAS 119
                   +    +   A     D  + L+     +N AD N    +++ G TPLY A +
Sbjct: 5   HHHHHHGSDLGKKLLEAARAGQDDEVRILM-----ANGADVN---AKDEYGLTPLYLATA 56

Query: 120 VGKIE 124
            G +E
Sbjct: 57  HGHLE 61

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 45.5 bits (109), Expect = 4e-06
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 8/59 (13%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
           D  G T +H  A I ++++A+ L+      + AD N    ++K G+T    +   G  +
Sbjct: 77  DAIGFTPLHLAAFIGHLEIAEVLL-----KHGADVN---AQDKFGKTAFDISIGNGNED 127

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 48.2 bits (116), Expect = 8e-07
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 8/61 (13%)

Query: 68  NGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALR 127
             + +VH LA    +    T +       +   N     ++ G TPL  AA+ G+I  + 
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRI-----EQENVIN---HTDEEGFTPLMWAAAHGQIAVVE 53

Query: 128 Y 128
           +
Sbjct: 54  F 54

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 47.4 bits (114), Expect = 1e-06
 Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 8/64 (12%)

Query: 65  TDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
            D NG T +      N+V   K L+      + AD     +E   G   +  A ++G   
Sbjct: 98  YDWNGGTPLLYAVHGNHVKCVKMLL-----ESGADPT---IETDSGYNSMDLAVALGYRS 149

Query: 125 ALRY 128
             + 
Sbjct: 150 VQQV 153

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 47.4 bits (114), Expect = 2e-06
 Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 8/63 (12%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEA 125
                +A+    +    D+ K L+         D N     +  G TPL  A     ++ 
Sbjct: 66  GKGRESALSLACSKGYTDIVKMLL-----DCGVDVN---EYDWNGGTPLLYAVHGNHVKC 117

Query: 126 LRY 128
           ++ 
Sbjct: 118 VKM 120

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 47.0 bits (113), Expect = 2e-06
 Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 16/101 (15%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGR-LPVEKRLEALMQTDDNGNTAVHALATINNVDVAKT 87
               ++H  AA  +   +   + +   +          D+ G T +   A    + V + 
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHT-------DEEGFTPLMWAAAHGQIAVVEF 54

Query: 88  LVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRY 128
           L+      N AD     +  K  E+ L  A S G  + ++ 
Sbjct: 55  LL-----QNGADPQ---LLGKGRESALSLACSKGYTDIVKM 87

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 48.5 bits (117), Expect = 8e-07
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 8/59 (13%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
           D  G T +   A   ++++ + L+      N AD N     +  G TPL+ AA  G +E
Sbjct: 77  DHAGMTPLRLAALFGHLEIVEVLL-----KNGADVN---ANDMEGHTPLHLAAMFGHLE 127

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 48.1 bits (116), Expect = 1e-06
 Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 8/69 (11%)

Query: 60  EALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAAS 119
                   +    +   A     D  + L+     +N AD N    E+  G TPL+ AA 
Sbjct: 5   HHHHHHGSDLGKKLLEAARAGRDDEVRILM-----ANGADVN---AEDASGWTPLHLAAF 56

Query: 120 VGKIEALRY 128
            G +E +  
Sbjct: 57  NGHLEIVEV 65

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 46.6 bits (112), Expect = 3e-06
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 8/63 (12%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEA 125
           D  G+T +H  A   ++++ + L+      N AD N    ++K G+T    +   G  + 
Sbjct: 110 DMEGHTPLHLAAMFGHLEIVEVLL-----KNGADVN---AQDKFGKTAFDISIDNGNEDL 161

Query: 126 LRY 128
              
Sbjct: 162 AEI 164

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 46.6 bits (112), Expect = 3e-06
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 8/60 (13%)

Query: 65  TDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
            D +G T +H  A   ++++ + L+      N AD N     +  G TPL  AA  G +E
Sbjct: 43  EDASGWTPLHLAAFNGHLEIVEVLL-----KNGADVN---AVDHAGMTPLRLAALFGHLE 94

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 47.3 bits (114), Expect = 8e-07
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 8/63 (12%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEA 125
           D NG T +H  A   +++V K L+        AD N    ++K G TPL+ AA  G +E 
Sbjct: 32  DKNGRTPLHLAARNGHLEVVKLLL-----EAGADVN---AKDKNGRTPLHLAARNGHLEV 83

Query: 126 LRY 128
           ++ 
Sbjct: 84  VKL 86

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 46.6 bits (112), Expect = 2e-06
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 8/63 (12%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEA 125
           D NG T +H  A   +++V K L+        AD N    ++K G TPL+ AA  G +E 
Sbjct: 65  DKNGRTPLHLAARNGHLEVVKLLL-----EAGADVN---AKDKNGRTPLHLAARNGHLEV 116

Query: 126 LRY 128
           ++ 
Sbjct: 117 VKL 119

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 44.6 bits (107), Expect = 6e-06
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 8/61 (13%)

Query: 68  NGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALR 127
           NG T +H  A   +++V K L+        AD N    ++K G TPL+ AA  G +E ++
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLL-----EAGADVN---AKDKNGRTPLHLAARNGHLEVVK 52

Query: 128 Y 128
            
Sbjct: 53  L 53

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 49.8 bits (120), Expect = 1e-06
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 8/64 (12%)

Query: 65  TDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
              NG T     A   +V + K  +     S  AD N     +  G T    AA  GK++
Sbjct: 68  RKKNGATPFLLAAIAGSVKLLKLFL-----SKGADVN---ECDFYGFTAFMEAAVYGKVK 119

Query: 125 ALRY 128
           AL++
Sbjct: 120 ALKF 123

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 49.0 bits (118), Expect = 2e-06
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 13/101 (12%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTL 88
                +  A   ED +L+++ L     E       Q ++ G T +H    ++  D+ + L
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLL-----EGGANVNFQEEEGGWTPLHNAVQMSREDIVELL 58

Query: 89  VEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYF 129
           +      + AD     +  K G TP   AA  G ++ L+ F
Sbjct: 59  L-----RHGADPV---LRKKNGATPFLLAAIAGSVKLLKLF 91

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 43.6 bits (104), Expect = 8e-05
 Identities = 28/108 (25%), Positives = 36/108 (33%), Gaps = 20/108 (18%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGRLP-VEKRLEALMQTDDNGNTAVHALATINNVDVAKT 87
           NG     +AA     +L+K FL +   V +        D  G TA    A    V   K 
Sbjct: 71  NGATPFLLAAIAGSVKLLKLFLSKGADVNEC-------DFYGFTAFMEAAVYGKVKALKF 123

Query: 88  LVEFSKQSNDADKN-------PLVVENKLGETPLYRAASVGKIEALRY 128
           L         A+ N             K G T L  AA  G +E L+ 
Sbjct: 124 LY-----KRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKI 166

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 42.8 bits (102), Expect = 2e-04
 Identities = 17/102 (16%), Positives = 32/102 (31%), Gaps = 21/102 (20%)

Query: 29  NGECAIHVAAAM---EDPELIKKFLGRLPVEKRLEA---LMQTDDNGNTAVHALATINNV 82
            G  A+  A       D E I   L        L+    +    + G T +       ++
Sbjct: 181 MGRNALIHALLSSDDSDVEAITHLL--------LDHGADVNVRGERGKTPLILAVEKKHL 232

Query: 83  DVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
            + + L+E        + N     +  G+T L  A  +   +
Sbjct: 233 GLVQRLLE----QEHIEIN---DTDSDGKTALLLAVELKLKK 267

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 42.8 bits (102), Expect = 2e-04
 Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 7/64 (10%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEA 125
               N  +       +VD+ + L+        A+ N    E + G TPL+ A  + + + 
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLL-----EGGANVN--FQEEEGGWTPLHNAVQMSREDI 54

Query: 126 LRYF 129
           +   
Sbjct: 55  VELL 58

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 41.3 bits (98), Expect = 6e-04
 Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 23/121 (19%)

Query: 15  AQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLP--VEKRLEALMQTDDNGNTA 72
            ++  +E        G  A+  AA     E++K  L  +   V          D+ G  A
Sbjct: 133 LRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNAC-------DNMGRNA 185

Query: 73  VHALATINN-----VDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALR 127
           +   A +++       +   L+      + AD N   V  + G+TPL  A     +  ++
Sbjct: 186 LI-HALLSSDDSDVEAITHLLL-----DHGADVN---VRGERGKTPLILAVEKKHLGLVQ 236

Query: 128 Y 128
            
Sbjct: 237 R 237

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 47.8 bits (115), Expect = 1e-06
 Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 15/96 (15%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTL 88
           +    +  AA     + ++  +          A   TD  G + +H  A   +    + L
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMAN-------GAPFTTDWLGTSPLHLAAQYGHFSTTEVL 53

Query: 89  VEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
           +          ++      K+  TPL+ AAS G   
Sbjct: 54  L-----RAGVSRD---ARTKVDRTPLHMAASEGHAN 81

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 46.2 bits (111), Expect = 3e-06
 Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 8/59 (13%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
                T +H  A+  + ++ + L+      + AD N    ++ L  T L+ A      E
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLL-----KHGADVN---AKDMLKMTALHWATEHNHQE 114

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 45.8 bits (110), Expect = 5e-06
 Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 8/59 (13%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
           D    TA+H     N+ +V + L+        AD +    ++K  +T    +   G  +
Sbjct: 97  DMLKMTALHWATEHNHQEVVELLI-----KYGADVH---TQSKFCKTAFDISIDNGNED 147

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 39/336 (11%), Positives = 95/336 (28%), Gaps = 82/336 (24%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTL 88
                +H  AA     + +               +    +  T +H +A+ ++ + ++ L
Sbjct: 93  ESPIKLHTEAA-GSYAITEPITRE-------SVNIIDPRHNRTVLHWIASNSSAEKSEDL 144

Query: 89  VEFSKQ---SNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSK 145
           +    +   +  AD N     +    TPL  A    +   + Y    +   A  +I +  
Sbjct: 145 IVHEAKECIAAGADVN---AMDCDENTPLMLAVLARRRRLVAYL---MKAGADPTIYNKS 198

Query: 146 MYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLG 205
              A+ +        +                +  ++          E    G+T + + 
Sbjct: 199 ERSALHQAAANRDFGM----------------MVYMLNSTKLKGDIEELDRNGMTALMIV 242

Query: 206 LGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMR 265
                 ++           +L++         A VD    A        K  T+      
Sbjct: 243 AHNEGRDQVAS-------AKLLV------EKGAKVDYDGAARKDSEK-YKGRTA------ 282

Query: 266 ILLFAVSNGIIEILEE-IRHKYPQTLDNVNEK---GQNILHVAIMYRQLEIFEI------ 315
            L +A     + I++  +  K      N +++   G+  + +A    ++E+         
Sbjct: 283 -LHYAAQVSNMPIVKYLVGEKGS----NKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA 337

Query: 316 -IKEKMQLSLAEWALKIDNEGYTILHQVADMKYYKQ 350
            ++              D   +T    +A    +  
Sbjct: 338 SVEAV------------DATDHTARQ-LAQANNHHN 360

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 13/100 (13%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTL 88
            G  A+H AA + +  ++K  +G     K  +     D++G T +   A    ++V   L
Sbjct: 278 KGRTALHYAAQVSNMPIVKYLVGEKGSNK--DK---QDEDGKTPIMLAAQEGRIEVVMYL 332

Query: 89  VEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRY 128
           +        A        +    T    A +      +  
Sbjct: 333 I-----QQGASVE---AVDATDHTARQLAQANNHHNIVDI 364

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 5/67 (7%), Positives = 10/67 (14%), Gaps = 9/67 (13%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEA 125
                          N  +          +N                 L+  A+ G    
Sbjct: 58  QHYSLYPNPQGYGNGNDFLGDFNH-----TNLQIPT---EPEPESPIKLHTEAA-GSYAI 108

Query: 126 LRYFAEQ 132
                 +
Sbjct: 109 TEPITRE 115

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 47.8 bits (115), Expect = 1e-06
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 8/63 (12%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEA 125
           D NG T +      N+V   + L+     +  AD      E   G TP+  A ++G  + 
Sbjct: 99  DWNGGTPLLYAVRGNHVKCVEALL-----ARGADLT---TEADSGYTPMDLAVALGYRKV 150

Query: 126 LRY 128
            + 
Sbjct: 151 QQV 153

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 47.8 bits (115), Expect = 1e-06
 Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 8/63 (12%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEA 125
                +A+   +T    D+   L+       D D N   + +  G TPL  A     ++ 
Sbjct: 66  AKERESALSLASTGGYTDIVGLLL-----ERDVDIN---IYDWNGGTPLLYAVRGNHVKC 117

Query: 126 LRY 128
           +  
Sbjct: 118 VEA 120

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 47.0 bits (113), Expect = 3e-06
 Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 17/98 (17%)

Query: 33  AIHVAAAMEDPELIKKFL--GRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVE 90
           +IH  AA  + + +K+ L  G   V K        D+ G T +   +    ++  + L+ 
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKP-------DERGFTPLIWASAFGEIETVRFLL- 56

Query: 91  FSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRY 128
                  AD +   +  K  E+ L  A++ G  + +  
Sbjct: 57  ----EWGADPH---ILAKERESALSLASTGGYTDIVGL 87

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 41.2 bits (98), Expect = 2e-04
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 9/61 (14%)

Query: 69  GNTAVHALATINNVDVAKTLVEFSKQSNDADK-NPLVVENKLGETPLYRAASVGKIEALR 127
            + ++H LA    +D  K  +         +  N     ++ G TPL  A++ G+IE +R
Sbjct: 2   DSLSIHQLAAQGELDQLKEHL-----RKGDNLVN---KPDERGFTPLIWASAFGEIETVR 53

Query: 128 Y 128
           +
Sbjct: 54  F 54

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 46.4 bits (111), Expect = 1e-06
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 8/63 (12%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEA 125
             +    +   A     D  + L+     +N AD      ++K G TPL+ AA  G +E 
Sbjct: 21  GSDLGKKLLEAARAGQDDEVRILM-----ANGADVA---AKDKNGSTPLHLAARNGHLEV 72

Query: 126 LRY 128
           ++ 
Sbjct: 73  VKL 75

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 39.1 bits (92), Expect = 4e-04
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 8/64 (12%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEA 125
           D NG+T +H  A   +++V K L+        AD      ++K G+T    +   G  + 
Sbjct: 54  DKNGSTPLHLAARNGHLEVVKLLL-----EAGADV---XAQDKFGKTAFDISIDNGNEDL 105

Query: 126 LRYF 129
               
Sbjct: 106 AEIL 109

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 19/114 (16%), Positives = 34/114 (29%), Gaps = 25/114 (21%)

Query: 17  QTDEELLG------YRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGN 70
           +T +EL        Y T   +       +     LI               + +  ++ +
Sbjct: 26  RTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNY-----------VAEQAESID 74

Query: 71  TAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
             +H  A   N+   +  +      N    N     +K G T LY A   G  +
Sbjct: 75  NPLHEAAKRGNLSWLRECL-----DNRVGVN---GLDKAGSTALYWACHGGHKD 120

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 13/100 (13%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTL 88
            G  A++ A      ++++    +  +E     L Q +  G+TA+HA A     D+ + L
Sbjct: 105 AGSTALYWACHGGHKDIVEMLFTQPNIE-----LNQQNKLGDTALHAAAWKGYADIVQLL 159

Query: 89  VEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRY 128
           +     +  A  +   + N   +     A +      L+ 
Sbjct: 160 L-----AKGARTD---LRNIEKKLAFDMATNAACASLLKK 191

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 46.1 bits (110), Expect = 8e-06
 Identities = 21/101 (20%), Positives = 43/101 (42%), Gaps = 15/101 (14%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGR-LPVEKRLEALMQTDDNGNTAVHALATINNVDVAKT 87
           + +  +H AA   +   +++ L   + V          D  G+TA++      + D+ + 
Sbjct: 72  SIDNPLHEAAKRGNLSWLRECLDNRVGVNGL-------DKAGSTALYWACHGGHKDIVEM 124

Query: 88  LVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRY 128
           L        + + N    +NKLG+T L+ AA  G  + ++ 
Sbjct: 125 LFT----QPNIELN---QQNKLGDTALHAAAWKGYADIVQL 158

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 7/64 (10%), Positives = 14/64 (21%), Gaps = 8/64 (12%)

Query: 61  ALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASV 120
              +    G   V              L        + D         + +T  ++  S 
Sbjct: 4   PPPKPVKPGQVKVFRALYTFEPRTPDELY-----IEEGDII---YITDMSDTNWWKGTSK 55

Query: 121 GKIE 124
           G+  
Sbjct: 56  GRTG 59

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 13/101 (12%), Positives = 29/101 (28%), Gaps = 21/101 (20%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEA-LMQTDDNGNTAVHALATINNVDVAKT 87
            G+  +  A    +P    +           E  ++   D  +T      +     +  +
Sbjct: 11  PGQVKVFRALYTFEPRTPDELYIE-------EGDIIYITDMSDTNWWKGTSKGRTGLIPS 63

Query: 88  LVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRY 128
                    +  ++         + PL+ AA  G +  LR 
Sbjct: 64  NYV-----AEQAES--------IDNPLHEAAKRGNLSWLRE 91

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 48.6 bits (117), Expect = 2e-06
 Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 8/61 (13%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEA 125
               ++ +HA+    + ++A  L+        AD      +N  G+ P+        +  
Sbjct: 219 GKGQDSPLHAVVRTASEELACLLM-----DFGADTQ---AKNAEGKRPVELVPPESPLAQ 270

Query: 126 L 126
           L
Sbjct: 271 L 271

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 47.9 bits (115), Expect = 4e-06
 Identities = 14/101 (13%), Positives = 30/101 (29%), Gaps = 16/101 (15%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGR-LPVEKRLEALMQTDDNGNTAVHALATINNVDVAKT 87
           +    +H AA       ++  + +   V            +  + +H      ++   K 
Sbjct: 58  SDWSPMHEAAIHGHQLSLRNLISQGWAVNII-------TADHVSPLHEACLGGHLSCVKI 110

Query: 88  LVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRY 128
           L+      + A  N          TPL+ A   G  + +  
Sbjct: 111 LL-----KHGAQVN---GVTADWHTPLFNACVSGSWDCVNL 143

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 46.7 bits (112), Expect = 1e-05
 Identities = 14/103 (13%), Positives = 34/103 (33%), Gaps = 15/103 (14%)

Query: 26  RTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVA 85
            T +    +  A      + +   L          A +Q + +  + +H  A   +V+  
Sbjct: 121 VTADWHTPLFNACVSGSWDCVNLLLQH-------GASVQPESDLASPIHEAARRGHVECV 173

Query: 86  KTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRY 128
            +L+     +   + +    +     TPLY A    +   ++ 
Sbjct: 174 NSLI-----AYGGNID---HKISHLGTPLYLACENQQRACVKK 208

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 46.7 bits (112), Expect = 1e-05
 Identities = 15/97 (15%), Positives = 30/97 (30%), Gaps = 17/97 (17%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGR-LPVEKRLEALMQTDDNGNTAVHALATINNVDVAKT 87
           +    IH AA     E +   +     ++ +         +  T ++           K 
Sbjct: 156 DLASPIHEAARRGHVECVNSLIAYGGNIDHK-------ISHLGTPLYLACENQQRACVKK 208

Query: 88  LVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
           L+      + AD N    + K  ++PL+        E
Sbjct: 209 LL-----ESGADVN----QGKGQDSPLHAVVRTASEE 236

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 46.3 bits (111), Expect = 1e-05
 Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 8/69 (11%)

Query: 60  EALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAAS 119
             LM    +  + +H  A   +    + L+     S     N   +      +PL+ A  
Sbjct: 50  NPLMGDAVSDWSPMHEAAIHGHQLSLRNLI-----SQGWAVN---IITADHVSPLHEACL 101

Query: 120 VGKIEALRY 128
            G +  ++ 
Sbjct: 102 GGHLSCVKI 110

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 16/101 (15%)

Query: 29  NGECAIHVAAAMEDPELIKKFL-GRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKT 87
             E     AA   D + + + L  R             D+NG TA+  +A + +    + 
Sbjct: 44  EYETPWWTAARKADEQALSQLLEDRDVDAV--------DENGRTALLFVAGLGSDKCVRL 95

Query: 88  LVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRY 128
           L         AD +    + + G T L+ AA   + E +  
Sbjct: 96  LA-----EAGADLD--HRDMRGGLTALHMAAGYVRPEVVEA 129

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 11/85 (12%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEA 125
              G TA+H  A     +V + LV        AD     VE++ G T L  A  + K   
Sbjct: 108 MRGGLTALHMAAGYVRPEVVEALV-----ELGADIE---VEDERGLTALELAREILKTTP 159

Query: 126 LRY---FAEQVNQTAAISILSSKMY 147
                 F  ++     I++L  +++
Sbjct: 160 KGNPMQFGRRIGLEKVINVLEGQVF 184

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 18/107 (16%), Positives = 29/107 (27%), Gaps = 20/107 (18%)

Query: 30  GECAIHVAAAMED----PELIKKFLGRLPVEKRLEALMQ----TDDNGNTAVHALATINN 81
           GE    + +          LI+   G  P                    T     A   +
Sbjct: 1   GEVNKIIGSRTAGEGAMEYLIEWKDGHSPS---WVPSSYIAADVVSEYETPWWTAARKAD 57

Query: 82  VDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRY 128
                 L+E      D D +     ++ G T L   A +G  + +R 
Sbjct: 58  EQALSQLLE------DRDVD---AVDENGRTALLFVAGLGSDKCVRL 95

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 47.4 bits (114), Expect = 2e-06
 Identities = 15/100 (15%), Positives = 26/100 (26%), Gaps = 20/100 (20%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTL 88
           NGE    +       + I + L  L   +        D    T +     +   +    L
Sbjct: 7   NGEIVEKIKDE----KSINQNLDFLRNYR--------DSYNRTPLMVACMLGMENAIDKL 54

Query: 89  VEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRY 128
           V      N         ++  G T L  A    ++     
Sbjct: 55  V-----ENFDKLE---DKDIEGSTALIWAVKNNRLGIAEK 86

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 46.6 bits (112), Expect = 5e-06
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 8/63 (12%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEA 125
           D +G T +         +++  L+      + A+ N     N  GETPL  A+  G+ E 
Sbjct: 98  DFSGKTPLMWSIIFGYSEMSYFLL-----EHGANVN---DRNLEGETPLIVASKYGRSEI 149

Query: 126 LRY 128
           ++ 
Sbjct: 150 VKK 152

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 45.5 bits (109), Expect = 1e-05
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 8/59 (13%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
           D  G+TA+      N + +A+ L+     S  ++ N    ++  G+TPL  +   G  E
Sbjct: 65  DIEGSTALIWAVKNNRLGIAEKLL-----SKGSNVN---TKDFSGKTPLMWSIIFGYSE 115

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 45.1 bits (108), Expect = 1e-05
 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 8/59 (13%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
           +  G T +   +     ++ K L+        AD +     +  G T    A   G+ E
Sbjct: 131 NLEGETPLIVASKYGRSEIVKKLL-----ELGADIS---ARDLTGLTAEASARIFGRQE 181

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 47.9 bits (114), Expect = 3e-06
 Identities = 27/111 (24%), Positives = 41/111 (36%), Gaps = 11/111 (9%)

Query: 27  TFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATI--NNVDV 84
            + GE  + +AA    P ++         +  L      D  GNT +HAL  I  N  + 
Sbjct: 137 FYFGELPLSLAACTNQPHIVHYLTENGHKQADLRR---QDSRGNTVLHALVAIADNTREN 193

Query: 85  AKTLVEFSKQ--SNDADKNPLV----VENKLGETPLYRAASVGKIEALRYF 129
            K + +         A   P      + N  G +PL  AA  GKI   ++ 
Sbjct: 194 TKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHI 244

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 21/133 (15%), Positives = 35/133 (26%), Gaps = 24/133 (18%)

Query: 26  RTFNGECAIHVAAAME---DPELIKKFLGRLPVEKRLEALMQT-----DDNGNTAVHALA 77
               G+  +  A         + I   L        +   + +        G TA+H   
Sbjct: 42  EPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAI 101

Query: 78  TINNVDVAKTLVEFSKQSNDADKN-----------PLVVENKLGETPLYRAASVGKIEAL 126
                   + LV        AD +                   GE PL  AA   +   +
Sbjct: 102 ERRCKHYVELLV-----EKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIV 156

Query: 127 RYFAEQVNQTAAI 139
            Y  E  ++ A +
Sbjct: 157 HYLTENGHKQADL 169

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 47.5 bits (114), Expect = 5e-06
 Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 17/106 (16%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGR-LPVEKRLEALMQTDDNGNTAVHALATINNVDVAKT 87
             E  +H AA +ED +++K  L   L   +        DD GNTA++      N+   K 
Sbjct: 61  ENEFPLHQAATLEDTKIVKILLFSGLDDSQF-------DDKGNTALYYAVDSGNMQTVKL 113

Query: 88  LVEFSKQSNDADKNPLVVENKLG-ETPLYRAASVGKIEALRYFAEQ 132
            V       +          K G +T  Y A  +  +  + YF  +
Sbjct: 114 FV-----KKNWRLM---FYGKTGWKTSFYHAVMLNDVSIVSYFLSE 151

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 10/64 (15%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEA 125
           D +G++A +     NNV +  TL+     +  A KN         E PL++AA++   + 
Sbjct: 28  DVHGHSASYYAIADNNVRLVCTLL-----NAGALKN-----LLENEFPLHQAATLEDTKI 77

Query: 126 LRYF 129
           ++  
Sbjct: 78  VKIL 81

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 44.4 bits (106), Expect = 5e-05
 Identities = 19/106 (17%), Positives = 34/106 (32%), Gaps = 21/106 (19%)

Query: 24  GYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVD 83
           G++T     + + A  + D  ++  FL  +P                + +H      +VD
Sbjct: 128 GWKT-----SFYHAVMLNDVSIVSYFLSEIPSTFD-------LAILLSCIHITIKNGHVD 175

Query: 84  VAKTLVEFSKQSNDADKNPLVVENKLGETP-LYRAASVGKIEALRY 128
           +   L+           N     N L   P +  A     IE L+ 
Sbjct: 176 MMILLL-----DYMTSTN---TNNSLLFIPDIKLAIDNKDIEMLQA 213

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 40.6 bits (96), Expect = 9e-04
 Identities = 11/104 (10%), Positives = 34/104 (32%), Gaps = 14/104 (13%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTL 88
            G  A++ A    + + +K F+     +K    +        T+ +    +N+V +    
Sbjct: 94  KGNTALYYAVDSGNMQTVKLFV-----KKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYF 148

Query: 89  VEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ 132
           +     S          +  +  + ++     G ++ +    + 
Sbjct: 149 L-----SEIPSTF----DLAILLSCIHITIKNGHVDMMILLLDY 183

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 22/113 (19%), Positives = 30/113 (26%), Gaps = 21/113 (18%)

Query: 26  RTFNGECAIHVAAA------MEDPELIKKFLGRLPVEKR--LEALMQTDDNGNTAVHALA 77
           RT  G                   EL K FL     EK   + A           V    
Sbjct: 71  RTKEGTTLFFPLFQGGGNDITGTTELCKIFL-----EKGADITA---LYKPYKIVVFKNI 122

Query: 78  TINNVDVAKT--LVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRY 128
               VD  +   L +     +        +++K G T L       K  AL+ 
Sbjct: 123 FNYFVDENEMIPLYKLIFSQSGLQLL---IKDKWGLTALEFVKRCQKPIALKM 172

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 39.7 bits (93), Expect = 9e-04
 Identities = 11/95 (11%), Positives = 23/95 (24%), Gaps = 11/95 (11%)

Query: 33  AIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFS 92
            +  AA +   E   +   +   +K         +     +          ++  L+   
Sbjct: 9   TVSAAAMLGTYEDFLELFEKGYEDKESVL---KSNILYDVLRNNNDEARYKISMFLIN-- 63

Query: 93  KQSNDADKNPLVVENKLGETPLYRAASVGKIEALR 127
                AD        K G T  +     G  +   
Sbjct: 64  ---KGADIK---SRTKEGTTLFFPLFQGGGNDITG 92

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 42.0 bits (100), Expect = 6e-05
 Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 9/63 (14%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEA 125
             + +  +   A    V+  + L+        AD N     N+ G  P+      G  + 
Sbjct: 9   GGSSDAGLATAAARGQVETVRQLL-----EAGADPN---ALNRFGRRPIQVMMM-GSAQV 59

Query: 126 LRY 128
              
Sbjct: 60  AEL 62

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 41.7 bits (99), Expect = 8e-05
 Identities = 15/65 (23%), Positives = 20/65 (30%), Gaps = 9/65 (13%)

Query: 65  TDDNGNT-AVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKI 123
            D    T  VH  A    +D    L         A  +   V +  G  P+  A   G  
Sbjct: 73  ADPATLTRPVHDAAREGFLDTLVVLH-----RAGARLD---VCDAWGRLPVDLAEEQGHR 124

Query: 124 EALRY 128
           +  RY
Sbjct: 125 DIARY 129

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 42.5 bits (101), Expect = 7e-05
 Identities = 22/108 (20%), Positives = 30/108 (27%), Gaps = 30/108 (27%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQ-------TDDNGNT-AVHALATIN 80
            G   I V             +G   V    E L+         D    T  VH  A   
Sbjct: 44  YGRRPIQVMM-----------MGSARV---AELLLLHGAEPNCADPATLTRPVHDAAREG 89

Query: 81  NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRY 128
            +D    L         A  +   V +  G  P+  A  +G  +  RY
Sbjct: 90  FLDTLVVLH-----RAGARLD---VRDAWGRLPVDLAEELGHRDVARY 129

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 39.4 bits (93), Expect = 7e-04
 Identities = 8/53 (15%), Positives = 15/53 (28%), Gaps = 8/53 (15%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAA 118
            +     +   A    V+  + L+        A+ N     N  G  P+    
Sbjct: 9   MEPSADWLATAAARGRVEEVRALL-----EAGANPN---APNSYGRRPIQVMM 53

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 15/95 (15%), Positives = 24/95 (25%), Gaps = 2/95 (2%)

Query: 29  NGECAIHVAAAMEDPELIK--KFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAK 86
            G   +       D  L+   +FL  +P  K L        + N  +     + N     
Sbjct: 277 QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACA 336

Query: 87  TLVEFSKQSNDADKNPLVVENKLGETPLYRAASVG 121
            L+           N   +    G   L   A   
Sbjct: 337 LLLSIPSVLALTKANNYYINETGGRLDLRAVALEH 371

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 41.1 bits (96), Expect = 5e-04
 Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 19/100 (19%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEA----LMQTDDNGNTAVHALATINNVDV 84
             E A+H+A    D          L +   L      L +    G+TA+H     +N + 
Sbjct: 168 PDETALHLAVRSVDR-------TSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAEC 220

Query: 85  AKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
            K L+        A      + N+ GETPL  A  +    
Sbjct: 221 LKLLL-----RGKASIE---IANESGETPLDIAKRLKHEH 252

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	578
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.98
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.98
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.97
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.96
2pnn_A	273	Transient receptor potential cation channel subfa	99.96
2etb_A	256	Transient receptor potential cation channel subfam	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.94
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.93
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.93
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.93
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.93
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.92
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.92
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.92
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.92
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.92
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.91
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.91
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.91
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.91
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.9
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.9
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.9
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.89
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.89
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.88
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.88
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.87
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.87
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.87
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.86
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.86
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.86
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.85
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.85
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.85
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.84
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.84
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.83
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.83
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.83
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.82
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.78
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.78
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.78
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.78
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.78
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.77
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.76
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.76
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.75
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.68
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.62

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=9.8e-41  Score=350.70  Aligned_cols=322  Identities=16%  Similarity=0.180  Sum_probs=216.2

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN   80 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g   80 (578)
                      ||..|+.+.++.++++   ....+..+..|.||||+|+..|+.++|++|+++ +++     ++.+|.+|+||||+|++.|
T Consensus        21 Aa~~g~~~~v~~Ll~~---g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~-----~~~~~~~g~t~L~~A~~~g   91 (437)
T 1n11_A           21 ASFMGHLPIVKNLLQR---GASPNVSNVKVETPLHMAARAGHTEVAKYLLQN-KAK-----VNAKAKDDQTPLHCAARIG   91 (437)
T ss_dssp             HHHHTCHHHHHHHHHT---TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH-TCC-----SSCCCTTSCCHHHHHHHHT
T ss_pred             HHHCCCHHHHHHHHHc---CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCC-----CCCCCCCCCCHHHHHHHCC
Confidence            5778999977777776   344567788999999999999999999999998 888     9999999999999999999


Q ss_pred             CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHH----
Q 048145           81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIW----  151 (578)
Q Consensus        81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~----  151 (578)
                      +.+++++|+++|+        +++..+..|.||||+|+.+|+.+++++|++.     ..+..|.||||+|+..+..    
T Consensus        92 ~~~~v~~Ll~~ga--------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~  163 (437)
T 1n11_A           92 HTNMVKLLLENNA--------NPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAE  163 (437)
T ss_dssp             CHHHHHHHHHHTC--------CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHHhCCC--------CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHH
Confidence            9999999999998        8889999999999999999999999999987     4567899999999853211    


Q ss_pred             ---HH-------hccCc-hHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccch
Q 048145          152 ---RQ-------VIQGC-PAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSA  220 (578)
Q Consensus       152 ---~~-------~~~G~-~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  220 (578)
                         ..       ...|. |++.++....      .+++++|+++|.+++..   +..|.|++|+|+..+          .
T Consensus       164 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~------~~~v~~Ll~~g~~~~~~---~~~g~t~L~~A~~~~----------~  224 (437)
T 1n11_A          164 LLLERDAHPNAAGKNGLTPLHVAVHHNN------LDIVKLLLPRGGSPHSP---AWNGYTPLHIAAKQN----------Q  224 (437)
T ss_dssp             HHHHTTCCTTCCCSSCCCHHHHHHHTTC------HHHHHHHGGGTCCSCCC---CTTCCCHHHHHHHTT----------C
T ss_pred             HHHhCCCCCCCCCCCCCCHHHHHHHcCC------HHHHHHHHhCCCCCCCc---CCCCCCHHHHHHHcC----------C
Confidence               00       11222 5555555554      67777777777665443   224667777764433          3


Q ss_pred             hhHHHHHHHHhcCCccccccccCccccccccccccccc--------------------------ccccchhHHHHHHhcC
Q 048145          221 GEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMT--------------------------SSMRTMRILLFAVSNG  274 (578)
Q Consensus       221 ~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t--------------------------~~~~g~~pLh~Aa~~G  274 (578)
                      .+.++.++....+               .+..+..|.|                          .+..|.||||+|++.|
T Consensus       225 ~~~~~~Ll~~g~~---------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~  289 (437)
T 1n11_A          225 VEVARSLLQYGGS---------------ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEG  289 (437)
T ss_dssp             HHHHHHHHHTTCC---------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             HHHHHHHHHcCCC---------------CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcC
Confidence            4445544432211               1111112222                          1222333666666556


Q ss_pred             HHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcccccCCCCC
Q 048145          275 IIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYYKQGTQA  354 (578)
Q Consensus       275 ~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~~~~~~~  354 (578)
                      +.+++++|++ .+.+++.+|..|+||||+|+.+|+.+++++|+     +.|+++|.+|..|+||||+|+..|+.      
T Consensus       290 ~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-----~~gad~n~~~~~g~t~L~~A~~~g~~------  357 (437)
T 1n11_A          290 HVPVADVLIK-HGVMVDATTRMGYTPLHVASHYGNIKLVKFLL-----QHQADVNAKTKLGYSPLHQAAQQGHT------  357 (437)
T ss_dssp             CHHHHHHHHH-HTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHH-----HTTCCTTCCCTTSCCHHHHHHHTTCH------
T ss_pred             CHHHHHHHHh-CCccCCCCCCCCCCHHHHHHHcCcHHHHHHHH-----hcCCCCCCCCCCCCCHHHHHHHCChH------
Confidence            6666665555 45555555555666666666666666666555     34445555666666666666655543      


Q ss_pred             ChHHhHHHHHHHHHHHHhhCCCccccccccCCCCChhhhhhhhh
Q 048145          355 GPVLQFQDELEWFERVKDIAPPHYAMHRDKNKRMTANDLFDLTH  398 (578)
Q Consensus       355 ~~~l~l~~~l~~~~~v~~~~~~~~~~~~n~~~g~t~~~l~~~~~  398 (578)
                                   +.++.++..+......+.+|+||.+++.+..
T Consensus       358 -------------~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g  388 (437)
T 1n11_A          358 -------------DIVTLLLKNGASPNEVSSDGTTPLAIAKRLG  388 (437)
T ss_dssp             -------------HHHHHHHHTTCCSCCCCSSSCCHHHHHHHTT
T ss_pred             -------------HHHHHHHHCcCCCCCCCCCCCCHHHHHHHcC
Confidence                         4555555555554444449999999876543

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.8e-38  Score=312.20  Aligned_cols=233  Identities=12%  Similarity=0.101  Sum_probs=193.5

Q ss_pred             CcccCChHHHHHHHhcCCc--------hhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChH
Q 048145            1 MALKGDRQGFLRYFAQQTD--------EELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTA   72 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~--------~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~Tp   72 (578)
                      ||+.|+.+.+.+++.....        ....+..|..|.||||+||..|+.++|++|++. +.+     ++.+|.+|+||
T Consensus        22 Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~-----~~~~~~~g~t~   95 (285)
T 3d9h_A           22 ASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQ-GWA-----VNIITADHVSP   95 (285)
T ss_dssp             --------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHT-TCC-----SCEECTTCCCH
T ss_pred             HhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHC-CCC-----CCCcCCCCCCH
Confidence            6889998888886654111        123467889999999999999999999999998 899     99999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh----ccccCCccHHHHHHHH
Q 048145           73 VHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ----VNQTAAISILSSKMYI  148 (578)
Q Consensus        73 Lh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~----~~~~~g~t~Lh~A~~~  148 (578)
                      ||+|+..|+.+++++|+++|+        +++.+|..|.||||+|+..|+.+++++|++.    ..+.+|.||||+|+  
T Consensus        96 L~~A~~~g~~~~v~~Ll~~ga--------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~--  165 (285)
T 3d9h_A           96 LHEACLGGHLSCVKILLKHGA--------QVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAA--  165 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTC--------CSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHH--
T ss_pred             HHHHHHCCcHHHHHHHHHCCC--------CCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHH--
Confidence            999999999999999999999        8999999999999999999999999999998    34567999999999  


Q ss_pred             HHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHH
Q 048145          149 AIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMI  228 (578)
Q Consensus       149 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~  228 (578)
                            ..|+                .+++++|+++|++++..                                     
T Consensus       166 ------~~g~----------------~~~v~~Ll~~g~~~~~~-------------------------------------  186 (285)
T 3d9h_A          166 ------RRGH----------------VECVNSLIAYGGNIDHK-------------------------------------  186 (285)
T ss_dssp             ------HHTC----------------HHHHHHHHHTTCCTTCC-------------------------------------
T ss_pred             ------HcCC----------------HHHHHHHHHCCCCCCCc-------------------------------------
Confidence                  6677                89999999998876433                                     


Q ss_pred             HHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhC
Q 048145          229 QVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYR  308 (578)
Q Consensus       229 ~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g  308 (578)
                                              |..|.|       |||+|+..|+.+++++|++ .+++++. |..|+||||+|+++|
T Consensus       187 ------------------------d~~g~t-------~L~~A~~~~~~~~v~~Ll~-~ga~~~~-~~~g~t~L~~A~~~~  233 (285)
T 3d9h_A          187 ------------------------ISHLGT-------PLYLACENQQRACVKKLLE-SGADVNQ-GKGQDSPLHAVVRTA  233 (285)
T ss_dssp             ------------------------BTTTBC-------HHHHHHHTTCHHHHHHHHH-TTCCTTC-CBTTBCHHHHHHHTT
T ss_pred             ------------------------CCCCCC-------HHHHHHHcCcHHHHHHHHH-CCCCCCC-CCCCCCHHHHHHHcC
Confidence                                    235566       9999999999999999998 7888985 899999999999999


Q ss_pred             cHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcc
Q 048145          309 QLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMK  346 (578)
Q Consensus       309 ~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~  346 (578)
                      +.+++++|+     +.|++++.+|.+|+||||+|+...
T Consensus       234 ~~~~v~~Ll-----~~gad~~~~d~~g~t~l~~A~~~~  266 (285)
T 3d9h_A          234 SEELACLLM-----DFGADTQAKNAEGKRPVELVPPES  266 (285)
T ss_dssp             CHHHHHHHH-----HTTCCTTCCCTTSCCGGGGSCTTS
T ss_pred             CHHHHHHHH-----HCCCCCCCcCCCCCCHHHHhcCcc
Confidence            999999999     567789999999999999999543

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=4.5e-38  Score=319.89  Aligned_cols=131  Identities=15%  Similarity=0.173  Sum_probs=122.3

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN   80 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g   80 (578)
                      ||.+|+.+.++.++.+  .+...+..|..|.||||+|+..|+.++|++|+++ +++     ++.+|..|+||||+|+..|
T Consensus        31 A~~~g~~~~v~~ll~~--~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~-----~~~~~~~g~t~L~~A~~~g  102 (351)
T 3utm_A           31 AARSGNEEKLMALLTP--LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH-GAD-----VHAKDKGGLVPLHNACSYG  102 (351)
T ss_dssp             HHHHTCHHHHHHHCCT--TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHT-TCC-----TTCCCTTCCCHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHh--cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCC-----CCccCCCCCcHHHHHHHCC
Confidence            5789999999999987  4556678899999999999999999999999999 999     9999999999999999999


Q ss_pred             CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHH
Q 048145           81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMY  147 (578)
Q Consensus        81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~  147 (578)
                      +.+++++|+++|+        +++.+|..|.||||+|+.+|+.+++++|+++     ..+..|.+|+++|+.
T Consensus       103 ~~~iv~~Ll~~g~--------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~  166 (351)
T 3utm_A          103 HYEVTELLLKHGA--------CVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPT  166 (351)
T ss_dssp             CHHHHHHHHHTTC--------CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSS
T ss_pred             CHHHHHHHHHCCC--------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhh
Confidence            9999999999999        8999999999999999999999999999998     567899999999874

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=5.2e-38  Score=329.92  Aligned_cols=284  Identities=18%  Similarity=0.187  Sum_probs=224.4

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN   80 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g   80 (578)
                      |+..|+.+.++.+++.   ....+..+..|.||||+|+..|+.++|+.|+++ +.+     .+..+..|.||||+|+..|
T Consensus        87 A~~~g~~~~v~~Ll~~---ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~-----~~~~~~~g~t~L~~A~~~g  157 (437)
T 1n11_A           87 AARIGHTNMVKLLLEN---NANPNLATTAGHTPLHIAAREGHVETVLALLEK-EAS-----QACMTKKGFTPLHVAAKYG  157 (437)
T ss_dssp             HHHHTCHHHHHHHHHH---TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCC-----SCCCCTTSCCHHHHHHHTT
T ss_pred             HHHCCCHHHHHHHHhC---CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCC-----CcCCCCCCCCHHHHHHHcC
Confidence            5678888866666665   444567788899999999999999999999998 777     8888899999999999999


Q ss_pred             CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHH-----
Q 048145           81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAI-----  150 (578)
Q Consensus        81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~-----  150 (578)
                      +.+++++|+++|+        +++..+..|.||||+|+.+|+.+++++|++.     ..+.+|.||||+|+..+.     
T Consensus       158 ~~~~v~~Ll~~g~--------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~  229 (437)
T 1n11_A          158 KVRVAELLLERDA--------HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVAR  229 (437)
T ss_dssp             CHHHHHHHHHTTC--------CTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHHhCCC--------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence            9999999999998        7888899999999999999999999999987     456788999999985321     


Q ss_pred             --HH-------HhccCc-hHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccch
Q 048145          151 --WR-------QVIQGC-PAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSA  220 (578)
Q Consensus       151 --~~-------~~~~G~-~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  220 (578)
                        +.       ....|. |++.+...+.      .+++++|+++|++++..   +..|.|++|+|+          ..+.
T Consensus       230 ~Ll~~g~~~~~~~~~g~t~L~~A~~~g~------~~~v~~Ll~~~~~~~~~---~~~g~t~L~~A~----------~~~~  290 (437)
T 1n11_A          230 SLLQYGGSANAESVQGVTPLHLAAQEGH------AEMVALLLSKQANGNLG---NKSGLTPLHLVA----------QEGH  290 (437)
T ss_dssp             HHHHTTCCTTCCCTTCCCHHHHHHHTTC------HHHHHHHHTTTCCTTCC---CTTCCCHHHHHH----------HHTC
T ss_pred             HHHHcCCCCCCCCCCCCCHHHHHHHCCC------HHHHHHHHhcCCCCCCC---CCCCCCHHHHHH----------HcCC
Confidence              10       011222 5555555444      67777777777766544   335667777764          3344


Q ss_pred             hhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChH
Q 048145          221 GEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNI  300 (578)
Q Consensus       221 ~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~  300 (578)
                      .+.++.++..               ..+++..|..|.|       |||+|+..|+.+++++|++ .+++++.+|..|+||
T Consensus       291 ~~~~~~Ll~~---------------g~~~~~~~~~g~t-------~L~~A~~~g~~~~v~~Ll~-~gad~n~~~~~g~t~  347 (437)
T 1n11_A          291 VPVADVLIKH---------------GVMVDATTRMGYT-------PLHVASHYGNIKLVKFLLQ-HQADVNAKTKLGYSP  347 (437)
T ss_dssp             HHHHHHHHHH---------------TCCTTCCCSSCCC-------HHHHHHHSSCSHHHHHHHH-TTCCTTCCCTTSCCH
T ss_pred             HHHHHHHHhC---------------CccCCCCCCCCCC-------HHHHHHHcCcHHHHHHHHh-cCCCCCCCCCCCCCH
Confidence            5555655432               2233444445566       9999999999999999998 899999999999999


Q ss_pred             HHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcccc
Q 048145          301 LHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYY  348 (578)
Q Consensus       301 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~  348 (578)
                      ||+|+++|+.+++++|+     +.|++++.+|.+|+||||+|++.|+.
T Consensus       348 L~~A~~~g~~~iv~~Ll-----~~ga~~~~~~~~g~t~l~~A~~~g~~  390 (437)
T 1n11_A          348 LHQAAQQGHTDIVTLLL-----KNGASPNEVSSDGTTPLAIAKRLGYI  390 (437)
T ss_dssp             HHHHHHTTCHHHHHHHH-----HTTCCSCCCCSSSCCHHHHHHHTTCH
T ss_pred             HHHHHHCChHHHHHHHH-----HCcCCCCCCCCCCCCHHHHHHHcCcH
Confidence            99999999999999999     56778999999999999999999864

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=7.4e-38  Score=300.35  Aligned_cols=214  Identities=19%  Similarity=0.185  Sum_probs=197.4

Q ss_pred             hccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCC
Q 048145           23 LGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNP  102 (578)
Q Consensus        23 ~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~  102 (578)
                      .+..|.+|.||||+|+..|+.+++++|+++ +.+     ++.+|..|.||||+|+..|+.+++++|+++|+        +
T Consensus         4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--------~   69 (237)
T 3b7b_A            4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQA-GAN-----IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA--------L   69 (237)
T ss_dssp             CCCSSCCSCCHHHHHHHHTCHHHHHHHHHT-TCC-----TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC--------C
T ss_pred             cccccCCCCCHHHHHHHcCcHHHHHHHHHc-CCC-----cCccCCCCCCHHHHHHHhCCHHHHHHHHhCCC--------C
Confidence            456788999999999999999999999999 999     99999999999999999999999999999999        8


Q ss_pred             cccCCCCCCCHHHHHHHcCcHHHHHHHHHh------ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHH
Q 048145          103 LVVENKLGETPLYRAASVGKIEALRYFAEQ------VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVA  176 (578)
Q Consensus       103 ~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~------~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~  176 (578)
                      ++.++..|.||||+|+..|+.+++++|++.      ..+..|.||||+|+        ..|+                .+
T Consensus        70 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~--------~~~~----------------~~  125 (237)
T 3b7b_A           70 VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT--------EYKH----------------VD  125 (237)
T ss_dssp             CCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHH--------HTTC----------------HH
T ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHH--------HcCC----------------HH
Confidence            899999999999999999999999999987      46688999999999        7777                89


Q ss_pred             HHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCccccccccccccc
Q 048145          177 LVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKD  256 (578)
Q Consensus       177 ~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g  256 (578)
                      ++++|+++|++++..                                                             +..|
T Consensus       126 ~~~~Ll~~g~~~~~~-------------------------------------------------------------~~~g  144 (237)
T 3b7b_A          126 LVKLLLSKGSDINIR-------------------------------------------------------------DNEE  144 (237)
T ss_dssp             HHHHHHHTTCCTTCC-------------------------------------------------------------CTTS
T ss_pred             HHHHHHHCCCCCCcc-------------------------------------------------------------CCCC
Confidence            999999998876433                                                             2355


Q ss_pred             ccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCC
Q 048145          257 MTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGY  336 (578)
Q Consensus       257 ~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~  336 (578)
                      .|       |||+|+..|+.+++++|++ .+.+++..|..|+||||+|+++|+.+++++|+     +.|++++.+|++|+
T Consensus       145 ~t-------~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-----~~gad~~~~d~~g~  211 (237)
T 3b7b_A          145 NI-------CLHWAAFSGCVDIAEILLA-AKCDLHAVNIHGDSPLHIAARENRYDCVVLFL-----SRDSDVTLKNKEGE  211 (237)
T ss_dssp             CC-------HHHHHHHHCCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-----TTTCCTTCCCTTSC
T ss_pred             CC-------HHHHHHHCCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHH-----HcCCCCCccCCCCC
Confidence            66       9999999999999999998 89999999999999999999999999999999     56778999999999


Q ss_pred             chhhHHHhcccc
Q 048145          337 TILHQVADMKYY  348 (578)
Q Consensus       337 T~LhlA~~~~~~  348 (578)
                      ||||+|+..++.
T Consensus       212 t~l~~A~~~~~~  223 (237)
T 3b7b_A          212 TPLQCASLNSQV  223 (237)
T ss_dssp             CHHHHSCTTCHH
T ss_pred             CHHHHHHHHHHH
Confidence            999999999854

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.7e-37  Score=305.91  Aligned_cols=235  Identities=17%  Similarity=0.199  Sum_probs=206.1

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN   80 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g   80 (578)
                      |+..|+.+.++.+++.  ...+....+..|.||||+|+..|+.++|++|+++ +.+     ++.+|.+|.||||+|+..|
T Consensus        12 A~~~g~~~~v~~Ll~~--g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~-----~~~~~~~g~t~L~~A~~~~   83 (285)
T 1wdy_A           12 AVQNEDVDLVQQLLEG--GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH-GAD-----PVLRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHTTCHHHHHHHHHT--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCC-----TTCCCTTCCCHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHc--CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCC-----CcccCCCCCCHHHHHHHcC
Confidence            5789999988888877  3444444478899999999999999999999999 999     9999999999999999999


Q ss_pred             CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----cc----------ccCCccHHHHH
Q 048145           81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VN----------QTAAISILSSK  145 (578)
Q Consensus        81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~----------~~~g~t~Lh~A  145 (578)
                      +.+++++|+++|+        +++.+|..|.||||+|+.+|+.+++++|++.     ..          +..|.||||+|
T Consensus        84 ~~~~v~~Ll~~g~--------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A  155 (285)
T 1wdy_A           84 SVKLLKLFLSKGA--------DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA  155 (285)
T ss_dssp             CHHHHHHHHHTTC--------CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHH
T ss_pred             CHHHHHHHHHcCC--------CCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHH
Confidence            9999999999999        8999999999999999999999999999998     12          67799999999


Q ss_pred             HHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhc-cccccccccCCCCCCchhhcccCCCCccccccccchhhHH
Q 048145          146 MYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEK-RIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWV  224 (578)
Q Consensus       146 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  224 (578)
                      +        ..|+                .+++++|+++ |.+++..                                 
T Consensus       156 ~--------~~~~----------------~~~v~~Ll~~~~~~~~~~---------------------------------  178 (285)
T 1wdy_A          156 A--------EKGH----------------VEVLKILLDEMGADVNAC---------------------------------  178 (285)
T ss_dssp             H--------HHTC----------------HHHHHHHHHTSCCCTTCC---------------------------------
T ss_pred             H--------HcCC----------------HHHHHHHHHhcCCCCCcc---------------------------------
Confidence            9        6677                8999999986 7665433                                 


Q ss_pred             HHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCH----HHHHHHHHHHCCCcccccccCCChH
Q 048145          225 ELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGI----IEILEEIRHKYPQTLDNVNEKGQNI  300 (578)
Q Consensus       225 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~----~~iv~~Ll~~~~~~i~~~d~~G~t~  300 (578)
                                                  |..|.|       |||+|+..|+    .+++++|++ .|++++.+|..|+||
T Consensus       179 ----------------------------~~~g~t-------~l~~a~~~~~~~~~~~i~~~Ll~-~g~~~~~~~~~g~t~  222 (285)
T 1wdy_A          179 ----------------------------DNMGRN-------ALIHALLSSDDSDVEAITHLLLD-HGADVNVRGERGKTP  222 (285)
T ss_dssp             ----------------------------CTTSCC-------HHHHHHHCSCTTTHHHHHHHHHH-TTCCSSCCCTTSCCH
T ss_pred             ----------------------------CCCCCC-------HHHHHHHccccchHHHHHHHHHH-cCCCCCCcCCCCCcH
Confidence                                        235555       9999999998    899999998 889999999999999


Q ss_pred             HHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcccc
Q 048145          301 LHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYY  348 (578)
Q Consensus       301 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~  348 (578)
                      ||+|+++|+.+++++|+++    .+.+++.+|.+|+||||+|++.++.
T Consensus       223 L~~A~~~~~~~~v~~Ll~~----~g~~~~~~~~~g~t~l~~A~~~~~~  266 (285)
T 1wdy_A          223 LILAVEKKHLGLVQRLLEQ----EHIEINDTDSDGKTALLLAVELKLK  266 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHS----SSCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHhc----cCCCccccCCCCCcHHHHHHHcCcH
Confidence            9999999999999999932    4567899999999999999998865

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=4.7e-38  Score=305.12  Aligned_cols=214  Identities=18%  Similarity=0.171  Sum_probs=164.4

Q ss_pred             hccCCCCCCcHHHHHHhcC-------------ChHHHHHHHccCCCchhhhhhh-ccCCCCChHHHHHHHcCCHHHHHHH
Q 048145           23 LGYRTFNGECAIHVAAAME-------------DPELIKKFLGRLPVEKRLEALM-QTDDNGNTAVHALATINNVDVAKTL   88 (578)
Q Consensus        23 ~~~~~~~g~T~Lh~Aa~~g-------------~~~~v~~Ll~~~~~~~~~~~l~-~~d~~G~TpLh~Aa~~g~~~iv~~L   88 (578)
                      ++.+|.+|.||||+|+..|             +.++++.|++. +.+     ++ .+|..|+||||+|+..|+.+++++|
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~-g~~-----~~~~~d~~g~t~L~~A~~~g~~~~v~~L   76 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQ-GAS-----LHNQTDRTGETALHLAARYSRSDAAKRL   76 (253)
T ss_dssp             -------------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHc-cCC-----cccccCCCCCcHHHHHHHcCCHHHHHHH
Confidence            4667899999999999988             89999999999 777     64 4589999999999999999999999


Q ss_pred             HhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh------ccccCCccHHHHHHHHHHHHHhccCchHHH
Q 048145           89 VEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ------VNQTAAISILSSKMYIAIWRQVIQGCPAIK  162 (578)
Q Consensus        89 l~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~------~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~  162 (578)
                      +++|+        +++.+|..|.||||+|+..|+.+++++|++.      ..+..|.||||+|+        ..|+    
T Consensus        77 l~~g~--------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~--------~~~~----  136 (253)
T 1yyh_A           77 LEASA--------DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAA--------RLAV----  136 (253)
T ss_dssp             HHTTC--------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHH--------HHTC----
T ss_pred             HHcCC--------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHH--------HcCh----
Confidence            99999        8999999999999999999999999999987      45788999999999        6676    


Q ss_pred             HHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCcccccccc
Q 048145          163 KIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQ  242 (578)
Q Consensus       163 ~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~  242 (578)
                                  .+++++|+++|++++..                                                   
T Consensus       137 ------------~~~v~~Ll~~g~~~~~~---------------------------------------------------  153 (253)
T 1yyh_A          137 ------------EGMLEDLINSHADVNAV---------------------------------------------------  153 (253)
T ss_dssp             ------------SSHHHHHHHTTCCTTCB---------------------------------------------------
T ss_pred             ------------HHHHHHHHHcCCCCCCc---------------------------------------------------
Confidence                        89999999998876543                                                   


Q ss_pred             CcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhch
Q 048145          243 YPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQL  322 (578)
Q Consensus       243 ~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~  322 (578)
                                |..|.|       |||+|+..|+.+++++|++ .|++++.+|..|+||||+|+++|+.+++++|+     
T Consensus       154 ----------d~~g~t-------~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll-----  210 (253)
T 1yyh_A          154 ----------DDLGKS-------ALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLL-----  210 (253)
T ss_dssp             ----------CTTSCB-------HHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-----
T ss_pred             ----------CCCCCC-------HHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHH-----
Confidence                      235666       9999999999999999998 89999999999999999999999999999999     


Q ss_pred             hhhhhhhcccCCCCchhhHHHhcccc
Q 048145          323 SLAEWALKIDNEGYTILHQVADMKYY  348 (578)
Q Consensus       323 ~~~~~~~~~d~~G~T~LhlA~~~~~~  348 (578)
                      +.|++++.+|..|+||||+|++.|+.
T Consensus       211 ~~ga~~~~~d~~g~tpl~~A~~~g~~  236 (253)
T 1yyh_A          211 DHFANRDITDHMDRLPRDIAQERMHH  236 (253)
T ss_dssp             HTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HcCCCccccccCCCCHHHHHHHcCCH
Confidence            56778999999999999999999975

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.8e-37  Score=298.22  Aligned_cols=216  Identities=15%  Similarity=0.140  Sum_probs=192.6

Q ss_pred             hccCCCCCCcHHHHHHhcCChHHHHHHHcc---CCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCC
Q 048145           23 LGYRTFNGECAIHVAAAMEDPELIKKFLGR---LPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDAD   99 (578)
Q Consensus        23 ~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~---~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~   99 (578)
                      .+..|.+|+||||+|+..|+.++|++|++.   .+.+     ++.+|..|.||||+|+..|+.+++++|+++|+      
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------   70 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-----LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA------   70 (241)
T ss_dssp             -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC-----SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC------
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CCcccccCCCHHHHHHHcCCHHHHHHHHHcCC------
Confidence            356789999999999999999999999982   3778     99999999999999999999999999999999      


Q ss_pred             CCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh---------ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhh
Q 048145          100 KNPLVVENKLGETPLYRAASVGKIEALRYFAEQ---------VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQI  170 (578)
Q Consensus       100 ~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~---------~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~  170 (578)
                        +++.+|..|.||||+|+..|+.+++++|++.         ..+..|.||||+|+        ..|+            
T Consensus        71 --~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~--------~~~~------------  128 (241)
T 1k1a_A           71 --SPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV--------NTEC------------  128 (241)
T ss_dssp             --CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHH--------HHTC------------
T ss_pred             --CccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHH--------HcCC------------
Confidence              8899999999999999999999999999987         34678999999999        6677            


Q ss_pred             hHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCccccccc
Q 048145          171 HKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQE  250 (578)
Q Consensus       171 ~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~  250 (578)
                          .+++++|+++|++++..+                                                          
T Consensus       129 ----~~~~~~Ll~~g~~~~~~~----------------------------------------------------------  146 (241)
T 1k1a_A          129 ----QETVQLLLERGADIDAVD----------------------------------------------------------  146 (241)
T ss_dssp             ----HHHHHHHHHTTCCTTCCC----------------------------------------------------------
T ss_pred             ----HHHHHHHHHcCCCccccc----------------------------------------------------------
Confidence                899999999988765431                                                          


Q ss_pred             ccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhc
Q 048145          251 NDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALK  330 (578)
Q Consensus       251 ~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~  330 (578)
                        +..|.|       |||+|++.|+.+++++|++ .|++++..|.+|+||||+|+.+|+.+++++|+     +.|++++.
T Consensus       147 --~~~g~t-------~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-----~~ga~~~~  211 (241)
T 1k1a_A          147 --IKSGRS-------PLIHAVENNSLSMVQLLLQ-HGANVNAQMYSGSSALHSASGRGLLPLVRTLV-----RSGADSSL  211 (241)
T ss_dssp             --TTTCCC-------HHHHHHHTTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHH-----HTTCCTTC
T ss_pred             --ccCCCc-------HHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH-----hcCCCCCC
Confidence              024555       9999999999999999998 89999999999999999999999999999999     56778999


Q ss_pred             ccCCCCchhhHHHhcccc
Q 048145          331 IDNEGYTILHQVADMKYY  348 (578)
Q Consensus       331 ~d~~G~T~LhlA~~~~~~  348 (578)
                      +|..|+||||+|+..++.
T Consensus       212 ~~~~g~tpl~~A~~~~~~  229 (241)
T 1k1a_A          212 KNCHNDTPLMVARSRRVI  229 (241)
T ss_dssp             CCTTSCCTTTTCSSHHHH
T ss_pred             cCCCCCCHHHHHHhcCcH
Confidence            999999999999998854

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=2.1e-37  Score=305.14  Aligned_cols=217  Identities=18%  Similarity=0.170  Sum_probs=174.6

Q ss_pred             hccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCC
Q 048145           23 LGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNP  102 (578)
Q Consensus        23 ~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~  102 (578)
                      ++.+|.+|+||||+|+..|+.++|++|++. +.+  ...++.+|..|+||||+||..|+.+++++|+++|+        +
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~--~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga--------~   70 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGF-SAG--HEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA--------G   70 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHH-HTT--SGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC--------C
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhc-CCC--cccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC--------C
Confidence            467899999999999999999999999987 443  22377899999999999999999999999999999        8


Q ss_pred             cccCCCCCCCHHHHHHHcCcHHHHHHHHHh--------------------------------------------------
Q 048145          103 LVVENKLGETPLYRAASVGKIEALRYFAEQ--------------------------------------------------  132 (578)
Q Consensus       103 ~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~--------------------------------------------------  132 (578)
                      ++.+|..|.||||+|+..|+.+++++|++.                                                  
T Consensus        71 ~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (282)
T 1oy3_D           71 VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ  150 (282)
T ss_dssp             SSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGG
T ss_pred             CCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhc
Confidence            999999999999999999999999999974                                                  


Q ss_pred             --ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCC
Q 048145          133 --VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGN  210 (578)
Q Consensus       133 --~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~  210 (578)
                        ..+..|.||||+|+        ..|+                .+++++|+++|++++..+                  
T Consensus       151 ~~~~~~~g~t~L~~A~--------~~g~----------------~~~v~~Ll~~g~~~~~~~------------------  188 (282)
T 1oy3_D          151 LEAENYDGHTPLHVAV--------IHKD----------------AEMVRLLRDAGADLNKPE------------------  188 (282)
T ss_dssp             TTCCCTTSCCHHHHHH--------HTTC----------------HHHHHHHHHHTCCTTCCC------------------
T ss_pred             CCCcCCCCcCHHHHHH--------HcCC----------------HHHHHHHHHcCCCCCCCC------------------
Confidence              13456777777777        5566                677777777776654330                  


Q ss_pred             ccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcc
Q 048145          211 IEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTL  290 (578)
Q Consensus       211 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i  290 (578)
                                                                +..|.|       |||+|++.|+.+++++|++ .|+++
T Consensus       189 ------------------------------------------~~~g~t-------pL~~A~~~~~~~~v~~Ll~-~gad~  218 (282)
T 1oy3_D          189 ------------------------------------------PTCGRT-------PLHLAVEAQAASVLELLLK-AGADP  218 (282)
T ss_dssp             ------------------------------------------TTTCCC-------HHHHHHHTTCHHHHHHHHH-TTCCT
T ss_pred             ------------------------------------------CCCCcC-------HHHHHHHcCCHHHHHHHHH-cCCCC
Confidence                                                      013566       9999999999999999998 79999


Q ss_pred             cccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhccc
Q 048145          291 DNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKY  347 (578)
Q Consensus       291 ~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~  347 (578)
                      +.+|..|+||||+|+++|+.+++++|+     +.|++++.+|.+|.|||++|.....
T Consensus       219 ~~~d~~g~tpL~~A~~~~~~~~v~~Ll-----~~ga~~~~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          219 TARMYGGRTPLGSALLRPNPILARLLR-----AHGAPEPEDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             TCCCTTSCCHHHHHHTSSCHHHHHHHH-----HTTCCCCCCC---------------
T ss_pred             cccccCCCCHHHHHHHcCCcHHHHHHH-----HcCCCcCcCCCcccccccccCCccc
Confidence            999999999999999999999999999     6778899999999999999987664

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.5e-36  Score=307.44  Aligned_cols=240  Identities=17%  Similarity=0.211  Sum_probs=170.6

Q ss_pred             CCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCC
Q 048145           30 GECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKL  109 (578)
Q Consensus        30 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~  109 (578)
                      |.||||+||..|+.++|++|+++ |++     ++.+|..+.+|+|.++..++.+++..+++.++        +++.+|..
T Consensus        59 g~TpLh~A~~~g~~~iv~~Ll~~-ga~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~d~~  124 (337)
T 4g8k_A           59 GWTPLHNAVQMSREDIVELLLRH-GAD-----PVLRKKNGATPFILAAIAGSVKLLKLFLSKGA--------DVNECDFY  124 (337)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHT-TCC-----TTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTC--------CTTCBCTT
T ss_pred             CcCHHHHHHHcCCHHHHHHHHHc-CCc-----hhhhccCCCchhHHHHhcccchhhHHhhhccc--------hhhhhccC
Confidence            44444444444444444444444 444     44444444444444444444444444444444        78888999


Q ss_pred             CCCHHHHHHHcCcHHHHHHHHHh---------------ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHH
Q 048145          110 GETPLYRAASVGKIEALRYFAEQ---------------VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKA  174 (578)
Q Consensus       110 g~TpLh~A~~~g~~~iv~~Ll~~---------------~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~  174 (578)
                      |.||||+|+..|+.+++++|++.               ..+..|.||||+|+        ..|+                
T Consensus       125 g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~--------~~g~----------------  180 (337)
T 4g8k_A          125 GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA--------EKGH----------------  180 (337)
T ss_dssp             CCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHH--------HHTC----------------
T ss_pred             CCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHH--------HCCC----------------
Confidence            99999999999999999999987               13457899999999        6777                


Q ss_pred             HHHHHHHHh-ccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccc
Q 048145          175 VALVKMLVE-KRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDT  253 (578)
Q Consensus       175 ~~~v~~Ll~-~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~  253 (578)
                      .+++++|++ .|++++..   +..|.+++++++....      .....++++.++..               +.+++..|
T Consensus       181 ~~~v~~LL~~~gad~n~~---d~~g~t~l~~~~~~~~------~~~~~~i~~lLl~~---------------gad~n~~d  236 (337)
T 4g8k_A          181 VEVLKILLDEMGADVNAC---DNMGRNALIHALLSSD------DSDVEAITHLLLDH---------------GADVNVRG  236 (337)
T ss_dssp             HHHHHHHHHHSCCCTTCC---CTTSCCHHHHHHHHSC------TTTHHHHHHHHHHT---------------TCCTTCCC
T ss_pred             HHHHHHHHhccCCCcCcc---CCCCCcHHHHHHHHcC------cccHHHHHHHHHHC---------------CCCCCCcC
Confidence            899999996 58888765   3356777766532211      11122344444322               23344445


Q ss_pred             cccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccC
Q 048145          254 TKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDN  333 (578)
Q Consensus       254 ~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~  333 (578)
                      ..|+|       |||+|+..|+.++++.|++..+.+++.+|.+|+||||+|+++|+.++|++|+     +.|+++|    
T Consensus       237 ~~g~t-------~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll-----~~GAd~n----  300 (337)
T 4g8k_A          237 ERGKT-------PLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLC-----KRGASTD----  300 (337)
T ss_dssp             GGGCC-------HHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH-----TTSCSST----
T ss_pred             CCCCC-------HHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHH-----HCCCCCC----
Confidence            56666       9999999999999999998779999999999999999999999999999999     5566666    


Q ss_pred             CCCchhhHHHhcccc
Q 048145          334 EGYTILHQVADMKYY  348 (578)
Q Consensus       334 ~G~T~LhlA~~~~~~  348 (578)
                       +.||||+|+..++.
T Consensus       301 -~~~~L~~A~~~~~~  314 (337)
T 4g8k_A          301 -CGDLVMTARRNYDH  314 (337)
T ss_dssp             -TCCHHHHHHHTTCH
T ss_pred             -CCCHHHHHHHcCCH
Confidence             45699999999875

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.7e-36  Score=296.34  Aligned_cols=250  Identities=19%  Similarity=0.219  Sum_probs=211.4

Q ss_pred             CCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhcc-CCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCC
Q 048145           29 NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQT-DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVEN  107 (578)
Q Consensus        29 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~-d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n  107 (578)
                      +|+||||.|++.|+.++|++|++. +.+     ++.+ +..|.||||+|+..|+.+++++|+++|+        +++.+|
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~-g~~-----~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~--------~~~~~~   69 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEG-GAN-----VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA--------DPVLRK   69 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHT-TCC-----TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC--------CTTCCC
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHc-CCC-----cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC--------CCcccC
Confidence            578999999999999999999999 888     8887 7889999999999999999999999999        899999


Q ss_pred             CCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHH
Q 048145          108 KLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLV  182 (578)
Q Consensus       108 ~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll  182 (578)
                      ..|.||||+|+..|+.+++++|++.     ..+..|.||||+|+        ..|+                .+++++|+
T Consensus        70 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--------~~~~----------------~~~~~~Ll  125 (285)
T 1wdy_A           70 KNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAA--------VYGK----------------VKALKFLY  125 (285)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHH--------HTTC----------------HHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHH--------HhCC----------------HHHHHHHH
Confidence            9999999999999999999999998     56788999999999        7787                89999999


Q ss_pred             hccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCccccccccccccccccccc
Q 048145          183 EKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMR  262 (578)
Q Consensus       183 ~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~  262 (578)
                      ++|++++......                                                   ......+..|.|    
T Consensus       126 ~~g~~~~~~~~~~---------------------------------------------------~~~~~~~~~g~t----  150 (285)
T 1wdy_A          126 KRGANVNLRRKTK---------------------------------------------------EDQERLRKGGAT----  150 (285)
T ss_dssp             HTTCCTTCCCCCC---------------------------------------------------HHHHHTTCCCCC----
T ss_pred             HhCCCcccccccH---------------------------------------------------HHHHhhccCCCc----
Confidence            9998876541100                                                   000111234555    


Q ss_pred             chhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCc----HHHHHHHHHhhchhhhhhhhcccCCCCch
Q 048145          263 TMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQ----LEIFEIIKEKMQLSLAEWALKIDNEGYTI  338 (578)
Q Consensus       263 g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~----~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~  338 (578)
                         |||+|+..|+.+++++|++..|.+++..|..|+||||.|+..++    .+++++|+     +.|++++.+|..|+||
T Consensus       151 ---~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll-----~~g~~~~~~~~~g~t~  222 (285)
T 1wdy_A          151 ---ALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLL-----DHGADVNVRGERGKTP  222 (285)
T ss_dssp             ---HHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHH-----HTTCCSSCCCTTSCCH
T ss_pred             ---HHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHH-----HcCCCCCCcCCCCCcH
Confidence               99999999999999999996799999999999999999999999    89999999     5677899999999999


Q ss_pred             hhHHHhcccccCCCCCChHHhHHHHHHHHHHHHhhCC-CccccccccCCCCChhhhhhhhh
Q 048145          339 LHQVADMKYYKQGTQAGPVLQFQDELEWFERVKDIAP-PHYAMHRDKNKRMTANDLFDLTH  398 (578)
Q Consensus       339 LhlA~~~~~~~~~~~~~~~l~l~~~l~~~~~v~~~~~-~~~~~~~n~~~g~t~~~l~~~~~  398 (578)
                      ||+|+..++.                   +.++.++. .+......+.+|+||.+++.+..
T Consensus       223 L~~A~~~~~~-------------------~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~  264 (285)
T 1wdy_A          223 LILAVEKKHL-------------------GLVQRLLEQEHIEINDTDSDGKTALLLAVELK  264 (285)
T ss_dssp             HHHHHHTTCH-------------------HHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHcCCH-------------------HHHHHHHhccCCCccccCCCCCcHHHHHHHcC
Confidence            9999999865                   33444443 33333333349999999876543

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.9e-36  Score=296.81  Aligned_cols=244  Identities=12%  Similarity=0.014  Sum_probs=181.1

Q ss_pred             CCCCCCcHHHHHHhcCChHHHHHHHccCCCch-----hhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCC
Q 048145           26 RTFNGECAIHVAAAMEDPELIKKFLGRLPVEK-----RLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADK  100 (578)
Q Consensus        26 ~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~-----~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~  100 (578)
                      -+..|.|+||+|+..|+.+.+..++...+.+.     ..+.++.+|.+|+||||+||..|+.+++++|++.|+       
T Consensus        11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-------   83 (285)
T 3d9h_A           11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGW-------   83 (285)
T ss_dssp             -------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTC-------
T ss_pred             cchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCC-------
Confidence            46789999999999999877777654411100     011267789999999999999999999999999999       


Q ss_pred             CCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHH
Q 048145          101 NPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAV  175 (578)
Q Consensus       101 ~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~  175 (578)
                       +++.+|..|.||||+|+..|+.+++++|++.     ..+.+|.||||+|+        ..|+                .
T Consensus        84 -~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~--------~~~~----------------~  138 (285)
T 3d9h_A           84 -AVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNAC--------VSGS----------------W  138 (285)
T ss_dssp             -CSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHH--------HHTC----------------H
T ss_pred             -CCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH--------HcCH----------------H
Confidence             8999999999999999999999999999998     56789999999999        6677                8


Q ss_pred             HHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccc
Q 048145          176 ALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTK  255 (578)
Q Consensus       176 ~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~  255 (578)
                      +++++|+++|++++..                                                              ..
T Consensus       139 ~~v~~Ll~~g~~~~~~--------------------------------------------------------------~~  156 (285)
T 3d9h_A          139 DCVNLLLQHGASVQPE--------------------------------------------------------------SD  156 (285)
T ss_dssp             HHHHHHHHTTCCSSCS--------------------------------------------------------------CT
T ss_pred             HHHHHHHHCCCCCCCC--------------------------------------------------------------CC
Confidence            9999999988765422                                                              13


Q ss_pred             cccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCC
Q 048145          256 DMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEG  335 (578)
Q Consensus       256 g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G  335 (578)
                      |.|       |||+|+..|+.+++++|++ .+.+++..|.+|+||||+|+.+|+.+++++|+     +.|++++. |..|
T Consensus       157 g~t-------~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll-----~~ga~~~~-~~~g  222 (285)
T 3d9h_A          157 LAS-------PIHEAARRGHVECVNSLIA-YGGNIDHKISHLGTPLYLACENQQRACVKKLL-----ESGADVNQ-GKGQ  222 (285)
T ss_dssp             TSC-------HHHHHHHHTCHHHHHHHHH-TTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHH-----HTTCCTTC-CBTT
T ss_pred             CCC-------HHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH-----HCCCCCCC-CCCC
Confidence            555       9999999999999999998 88999999999999999999999999999999     45667884 9999


Q ss_pred             CchhhHHHhcccccCCCCCChHHhHHHHHHHHHHHHhhCCCccccccccCCCCChhhhhhh
Q 048145          336 YTILHQVADMKYYKQGTQAGPVLQFQDELEWFERVKDIAPPHYAMHRDKNKRMTANDLFDL  396 (578)
Q Consensus       336 ~T~LhlA~~~~~~~~~~~~~~~l~l~~~l~~~~~v~~~~~~~~~~~~n~~~g~t~~~l~~~  396 (578)
                      +||||+|+..++.                   +.++.++..+......+.+|+||.+++.+
T Consensus       223 ~t~L~~A~~~~~~-------------------~~v~~Ll~~gad~~~~d~~g~t~l~~A~~  264 (285)
T 3d9h_A          223 DSPLHAVVRTASE-------------------ELACLLMDFGADTQAKNAEGKRPVELVPP  264 (285)
T ss_dssp             BCHHHHHHHTTCH-------------------HHHHHHHHTTCCTTCCCTTSCCGGGGSCT
T ss_pred             CCHHHHHHHcCCH-------------------HHHHHHHHCCCCCCCcCCCCCCHHHHhcC
Confidence            9999999999865                   33444444444444444499999999873

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=6.5e-36  Score=285.64  Aligned_cols=211  Identities=17%  Similarity=0.142  Sum_probs=191.4

Q ss_pred             CCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccC
Q 048145           27 TFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVE  106 (578)
Q Consensus        27 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~  106 (578)
                      +..++||||.|++.|+.+.++.|++..+..     ++.+|.+|+||||+|+..|+.+++++|+++|+        +++.+
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~-----~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~--------~~~~~   69 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADKSL-----ATRTDQDSRTALHWACSAGHTEIVEFLLQLGV--------PVNDK   69 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCGGG-----GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC--------CSCCC
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhchhh-----hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCC--------CCCCc
Confidence            346899999999999999999999985555     78889999999999999999999999999999        89999


Q ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHH
Q 048145          107 NKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKML  181 (578)
Q Consensus       107 n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~L  181 (578)
                      |..|.||||+|+..|+.+++++|++.     ..+..|.||||+|+        ..|+                .+++++|
T Consensus        70 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--------~~~~----------------~~~~~~L  125 (231)
T 3aji_A           70 DDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAA--------SKNR----------------HEIAVML  125 (231)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--------HTTC----------------HHHHHHH
T ss_pred             CCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHH--------HcCC----------------HHHHHHH
Confidence            99999999999999999999999998     56788999999999        7777                8999999


Q ss_pred             HhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccc
Q 048145          182 VEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSM  261 (578)
Q Consensus       182 l~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~  261 (578)
                      +++|.+++..                                                             +..|.|   
T Consensus       126 l~~g~~~~~~-------------------------------------------------------------~~~g~t---  141 (231)
T 3aji_A          126 LEGGANPDAK-------------------------------------------------------------DHYDAT---  141 (231)
T ss_dssp             HHTTCCTTCC-------------------------------------------------------------CTTSCC---
T ss_pred             HHcCCCCCCc-------------------------------------------------------------CCCCCc---
Confidence            9988776433                                                             225566   


Q ss_pred             cchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhH
Q 048145          262 RTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQ  341 (578)
Q Consensus       262 ~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~Lhl  341 (578)
                          |||+|+..|+.+++++|++ .+++++.+|.+|+||||+|+.+|+.+++++|+     +.|++++.+|..|+||||+
T Consensus       142 ----~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-----~~ga~~~~~~~~g~t~l~~  211 (231)
T 3aji_A          142 ----AMHRAAAKGNLKMVHILLF-YKASTNIQDTEGNTPLHLACDEERVEEAKFLV-----TQGASIYIENKEEKTPLQV  211 (231)
T ss_dssp             ----HHHHHHHHTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH-----HTTCCSCCCCTTSCCHHHH
T ss_pred             ----HHHHHHHcCCHHHHHHHHh-cCCCccccCCCCCCHHHHHHHCCCHHHHHHHH-----HCCCCCCCCCCCCCCHHHH
Confidence                9999999999999999998 89999999999999999999999999999999     5677899999999999999


Q ss_pred             HHhcccc
Q 048145          342 VADMKYY  348 (578)
Q Consensus       342 A~~~~~~  348 (578)
                      |+..++.
T Consensus       212 A~~~~~~  218 (231)
T 3aji_A          212 AKGGLGL  218 (231)
T ss_dssp             SCHHHHH
T ss_pred             HHhhHHH
Confidence            9877643

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=2.4e-36  Score=310.24  Aligned_cols=222  Identities=15%  Similarity=0.116  Sum_probs=178.2

Q ss_pred             ccCC-CCCCcHHHHHHhcCChHHHHHHH--------ccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCC
Q 048145           24 GYRT-FNGECAIHVAAAMEDPELIKKFL--------GRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQ   94 (578)
Q Consensus        24 ~~~~-~~g~T~Lh~Aa~~g~~~~v~~Ll--------~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~   94 (578)
                      +..| ..|+||||+||..|+.++|++|+        +. +++     ++.+|.+|+||||+|+..|+.++|++|+++|+ 
T Consensus       118 n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~-ga~-----vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga-  190 (373)
T 2fo1_E          118 NIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAA-GAD-----VNAMDCDENTPLMLAVLARRRRLVAYLMKAGA-  190 (373)
T ss_dssp             TTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHT-CCC-----TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-
T ss_pred             cccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhc-CCC-----CcCCCCCCCCHHHHHHHcChHHHHHHHHHCCC-
Confidence            4445 67888888888888887777766        44 777     88888888888888888888888888888887 


Q ss_pred             CCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh--------ccccCCccHHHHHHHHHHHHHhccC---chHHHH
Q 048145           95 SNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ--------VNQTAAISILSSKMYIAIWRQVIQG---CPAIKK  163 (578)
Q Consensus        95 ~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~--------~~~~~g~t~Lh~A~~~~~~~~~~~G---~~~~~~  163 (578)
                             +++.+|..|.||||+|+..|+.+++++|++.        ..+..|.||||+|+        ..|   +     
T Consensus       191 -------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~--------~~~~~~~-----  250 (373)
T 2fo1_E          191 -------DPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVA--------HNEGRDQ-----  250 (373)
T ss_dssp             -------CSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHH--------HSCSTTH-----
T ss_pred             -------CCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHH--------HhCCcch-----
Confidence                   7778888888888888888888888888764        35677888888887        444   4     


Q ss_pred             HHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccC
Q 048145          164 IWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQY  243 (578)
Q Consensus       164 ~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~  243 (578)
                                 .+++++|+++|++++....                                                  
T Consensus       251 -----------~~~v~~Ll~~g~~~~~~~~--------------------------------------------------  269 (373)
T 2fo1_E          251 -----------VASAKLLVEKGAKVDYDGA--------------------------------------------------  269 (373)
T ss_dssp             -----------HHHHHHHHHHTCCSSCCSG--------------------------------------------------
T ss_pred             -----------HHHHHHHHHCCCCcccccc--------------------------------------------------
Confidence                       7788888888777654310                                                  


Q ss_pred             cccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchh
Q 048145          244 PQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLS  323 (578)
Q Consensus       244 ~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~  323 (578)
                         ...+..|..|.|       |||+|+..|+.+++++|++..+++++.+|.+|+||||+|+.+|+.+++++|+     +
T Consensus       270 ---~~~~~~d~~g~t-------~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll-----~  334 (373)
T 2fo1_E          270 ---ARKDSEKYKGRT-------ALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLI-----Q  334 (373)
T ss_dssp             ---GGTSSSSCCCCC-------THHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH-----H
T ss_pred             ---cccCcccccCCC-------HHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHH-----H
Confidence               001122335555       9999999999999999999788999999999999999999999999999999     5


Q ss_pred             hhhhhhcccCCCCchhhHHHhcccc
Q 048145          324 LAEWALKIDNEGYTILHQVADMKYY  348 (578)
Q Consensus       324 ~~~~~~~~d~~G~T~LhlA~~~~~~  348 (578)
                      .|++++.+|..|+||||+|+..|+.
T Consensus       335 ~gad~~~~d~~g~t~l~~A~~~g~~  359 (373)
T 2fo1_E          335 QGASVEAVDATDHTARQLAQANNHH  359 (373)
T ss_dssp             TTCCSSCCCSSSCCHHHHHHHTTCH
T ss_pred             cCCCccCCCCCCCCHHHHHHHcCCH
Confidence            6778999999999999999999975

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=9.7e-36  Score=283.72  Aligned_cols=210  Identities=16%  Similarity=0.166  Sum_probs=184.0

Q ss_pred             CCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCccc-CCC
Q 048145           30 GECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVV-ENK  108 (578)
Q Consensus        30 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~-~n~  108 (578)
                      |+||||.|+..|+.++|+.|++. +.+    ..+.+|.+|+||||+|+..|+.+++++|+++|++      .+++. .+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~-~~~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~------~~~~~~~~~   70 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHS-KPS----LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN------VNLDDYPDD   70 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHH-CGG----GTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTT------CCGGGCCCT
T ss_pred             CccHHHHHHHhCCHHHHHHHHhc-Ccc----ccccCCCCCCCHHHHHHHcCCHHHHHHHHhcccc------ccccccCCC
Confidence            78999999999999999999999 544    1455899999999999999999999999999941      15555 889


Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHHh-------ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHH
Q 048145          109 LGETPLYRAASVGKIEALRYFAEQ-------VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKML  181 (578)
Q Consensus       109 ~g~TpLh~A~~~g~~~iv~~Ll~~-------~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~L  181 (578)
                      .|.||||+|+..|+.+++++|++.       ..+..|.||||+|+        ..|+                .+++++|
T Consensus        71 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~--------~~~~----------------~~~~~~L  126 (228)
T 2dzn_A           71 SGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV--------GKKW----------------FEVSQFL  126 (228)
T ss_dssp             TSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHH--------HTTC----------------HHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHH--------HcCC----------------HhHHHHH
Confidence            999999999999999999999986       45678999999999        7777                8999999


Q ss_pred             HhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccc
Q 048145          182 VEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSM  261 (578)
Q Consensus       182 l~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~  261 (578)
                      +++|++++..                                                             |..|.|   
T Consensus       127 l~~g~~~~~~-------------------------------------------------------------~~~g~t---  142 (228)
T 2dzn_A          127 IENGASVRIK-------------------------------------------------------------DKFNQI---  142 (228)
T ss_dssp             HHTTCCSCCC-------------------------------------------------------------CTTSCC---
T ss_pred             HHcCCCcccc-------------------------------------------------------------CCCCCC---
Confidence            9998876543                                                             235566   


Q ss_pred             cchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhH
Q 048145          262 RTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQ  341 (578)
Q Consensus       262 ~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~Lhl  341 (578)
                          |||+|+..|+.+++++|++..+++++.+|.+|+||||+|+..|+.+++++|+++    .|++++.+|.+|+||||+
T Consensus       143 ----~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~----~ga~~~~~~~~g~t~l~~  214 (228)
T 2dzn_A          143 ----PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK----YGAEYDLVDNKGAKAEDV  214 (228)
T ss_dssp             ----HHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHH----HCCCSCCBCTTSCBGGGG
T ss_pred             ----HHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHh----cCCCCCccCCCCCcHHHH
Confidence                999999999999999999944499999999999999999999999999999943    466799999999999999


Q ss_pred             HHhcc
Q 048145          342 VADMK  346 (578)
Q Consensus       342 A~~~~  346 (578)
                      |++.+
T Consensus       215 A~~~~  219 (228)
T 2dzn_A          215 ALNEQ  219 (228)
T ss_dssp             CSSTT
T ss_pred             HHHHH
Confidence            98654

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-36  Score=297.26  Aligned_cols=216  Identities=16%  Similarity=0.174  Sum_probs=163.3

Q ss_pred             ccCCCCCCcHHHHHHhcCChHHHHHHHccCCCch---hhhhhhccCCCCChHHHHHHHcCCH-HHHHHHHhhcCCCCCCC
Q 048145           24 GYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEK---RLEALMQTDDNGNTAVHALATINNV-DVAKTLVEFSKQSNDAD   99 (578)
Q Consensus        24 ~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~---~~~~l~~~d~~G~TpLh~Aa~~g~~-~iv~~Ll~~g~~~~~~~   99 (578)
                      ..+|..+.||||.||..|+.++|++|++. +.+.   ....++..|..|.||||.|+..++. ++++.|++.|+      
T Consensus         5 ~kkd~~~~~~L~~A~~~G~~~~v~~LL~~-~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Ga------   77 (269)
T 4b93_B            5 TKKDYREVEKLLRAVADGDLEMVRYLLEW-TEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGL------   77 (269)
T ss_dssp             --CCCHHHHHHHHHHHTTCHHHHHHHHTC-C----------------------------------------CCC------
T ss_pred             cccCccchhHHHHHHHcCCHHHHHHHHHC-CCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCC------
Confidence            34677889999999999999999999997 4431   1223567788999999999988876 48999999999      


Q ss_pred             CCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHH
Q 048145          100 KNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKA  174 (578)
Q Consensus       100 ~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~  174 (578)
                        +++.+|.+|.||||+|+.+|+.+++++|++.     ..+.+|.||+|+|+        ..|+                
T Consensus        78 --dvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~--------~~~~----------------  131 (269)
T 4b93_B           78 --GVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLAC--------QQGH----------------  131 (269)
T ss_dssp             --CTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHH--------HHTC----------------
T ss_pred             --CCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCcccccc--------ccCh----------------
Confidence              8999999999999999999999999999998     56789999999999        6666                


Q ss_pred             HHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCccccccccccc
Q 048145          175 VALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTT  254 (578)
Q Consensus       175 ~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~  254 (578)
                      .+++++|+++|++++..                                                             |.
T Consensus       132 ~~~~~~Ll~~g~~~n~~-------------------------------------------------------------d~  150 (269)
T 4b93_B          132 FQVVKCLLDSNAKPNKK-------------------------------------------------------------DL  150 (269)
T ss_dssp             HHHHHHHHHTTCCSCCC-------------------------------------------------------------CT
T ss_pred             HHHHHHHHHCCCCCCCC-------------------------------------------------------------CC
Confidence            89999999998876543                                                             23


Q ss_pred             ccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCC
Q 048145          255 KDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNE  334 (578)
Q Consensus       255 ~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~  334 (578)
                      .|.|       |||+|+..|+.+++++|++ .|+++|.+|..|+||||+|+.+|+.+++++|+     +.|++++.+|++
T Consensus       151 ~g~T-------pL~~A~~~g~~~~v~~Ll~-~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll-----~~Gad~~~~d~~  217 (269)
T 4b93_B          151 SGNT-------PLIYACSGGHHELVALLLQ-HGASINASNNKGNTALHEAVIEKHVFVVELLL-----LHGASVQVLNKR  217 (269)
T ss_dssp             TCCC-------HHHHHHHTTCGGGHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH-----HTTCCSCCCCTT
T ss_pred             CCCC-------HHHHHHHCCCHHHHHHHHH-CCCCCCccccCCCcHHHHHHHcCCHHHHHHHH-----HCCCCCCCcCCC
Confidence            5666       9999999999999999998 89999999999999999999999999999999     567889999999


Q ss_pred             CCchhhHHHhcc
Q 048145          335 GYTILHQVADMK  346 (578)
Q Consensus       335 G~T~LhlA~~~~  346 (578)
                      |+||||+|++++
T Consensus       218 G~TpL~~A~~~~  229 (269)
T 4b93_B          218 QRTAVDCAEQNS  229 (269)
T ss_dssp             SCCSGGGSCTTC
T ss_pred             CCCHHHHHHhCC
Confidence            999999999876

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=4e-36  Score=307.72  Aligned_cols=213  Identities=21%  Similarity=0.146  Sum_probs=188.7

Q ss_pred             hhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCC
Q 048145           22 LLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKN  101 (578)
Q Consensus        22 ~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~  101 (578)
                      ..+..|.+|.||||+||..|+.++|++|++. +++     ++.+|..|+||||+||..|+.++|++|+++|+        
T Consensus        12 ~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~-----~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~--------   77 (364)
T 3ljn_A           12 NRIKSDDENMEKIHVAARKGQTDEVRRLIET-GVS-----PTIQNRFGCTALHLACKFGCVDTAKYLASVGE--------   77 (364)
T ss_dssp             ----CCHHHHHHHHHHHHHTCHHHHHHHHHT-TCC-----TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCC--------
T ss_pred             CccccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCC-----ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCC--------
Confidence            3456788899999999999999999999999 999     99999999999999999999999999999998        


Q ss_pred             CcccCCCCCCCHHHHHHHcCcHHHHHHHHHh---------c-----------------cccCCccHHHHHHHHHHHHHhc
Q 048145          102 PLVVENKLGETPLYRAASVGKIEALRYFAEQ---------V-----------------NQTAAISILSSKMYIAIWRQVI  155 (578)
Q Consensus       102 ~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~---------~-----------------~~~~g~t~Lh~A~~~~~~~~~~  155 (578)
                      +++  +..|.||||+|+..|+.+++++|++.         .                 .+..|.||||+|+        .
T Consensus        78 ~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~--------~  147 (364)
T 3ljn_A           78 VHS--LWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCV--------G  147 (364)
T ss_dssp             CCC--CBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHH--------H
T ss_pred             Ccc--ccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHH--------H
Confidence            333  35799999999999999999999986         1                 6678999999999        7


Q ss_pred             cC--chHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcC
Q 048145          156 QG--CPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKG  233 (578)
Q Consensus       156 ~G--~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  233 (578)
                      .|  +                .+++++|+++|++++..                                          
T Consensus       148 ~g~~~----------------~~~v~~Ll~~ga~~~~~------------------------------------------  169 (364)
T 3ljn_A          148 LGPEY----------------LEMIKILVQLGASPTAK------------------------------------------  169 (364)
T ss_dssp             SCGGG----------------HHHHHHHHHHTCCTTCC------------------------------------------
T ss_pred             cCCch----------------HHHHHHHHHcCCCCccc------------------------------------------
Confidence            77  7                89999999998876543                                          


Q ss_pred             CccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCc-----ccccccCCChHHHHHHHhC
Q 048145          234 CTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQT-----LDNVNEKGQNILHVAIMYR  308 (578)
Q Consensus       234 ~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~-----i~~~d~~G~t~Lh~A~~~g  308 (578)
                                         |..|.|       |||+|+..|+.+++++|++ .+++     ++..|..|+||||+|+.+|
T Consensus       170 -------------------d~~g~t-------~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~~~~~g~t~L~~A~~~g  222 (364)
T 3ljn_A          170 -------------------DKADET-------PLMRAMEFRNREALDLMMD-TVPSKSSLRLDYANKQGNSHLHWAILIN  222 (364)
T ss_dssp             -------------------CTTSCC-------HHHHHHHTTCHHHHHHHHH-HCSCSSSCCTTCCCTTCCCTTHHHHTTT
T ss_pred             -------------------CCCCCC-------HHHHHHHcCCHHHHHHHHh-cccccccccccccCCCCCcHHHHHHHcC
Confidence                               235566       9999999999999999998 5555     9999999999999999999


Q ss_pred             cHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcccc
Q 048145          309 QLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYY  348 (578)
Q Consensus       309 ~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~  348 (578)
                      +.+++++|+     +.|++++.+|.+|+||||+|+..|+.
T Consensus       223 ~~~~v~~Ll-----~~gad~~~~d~~g~tpL~~A~~~g~~  257 (364)
T 3ljn_A          223 WEDVAMRFV-----EMGIDVNMEDNEHTVPLYLSVRAAMV  257 (364)
T ss_dssp             CHHHHHHHH-----TTTCCTTCCCTTSCCHHHHHHHTCCH
T ss_pred             CHHHHHHHH-----HcCCCCCCCCCCCCCHHHHHHHhChH
Confidence            999999999     56778999999999999999999875

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1e-34  Score=293.96  Aligned_cols=248  Identities=17%  Similarity=0.214  Sum_probs=209.4

Q ss_pred             CCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCC-CCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCccc
Q 048145           27 TFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDD-NGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVV  105 (578)
Q Consensus        27 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~-~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~  105 (578)
                      +.+|+||||.|++.|+.++|++||++ |++     ++.+|. .|+||||+||+.|+.++|++|+++|+        +++.
T Consensus        22 ~~~~~t~L~~Av~~g~~~~V~~LL~~-Gad-----vn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga--------~~~~   87 (337)
T 4g8k_A           22 AVEDNHLLIKAVQNEDVDLVQQLLEG-GAN-----VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA--------DPVL   87 (337)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHH-TCC-----TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC--------CTTC
T ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHC-CCC-----CCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCC--------chhh
Confidence            34589999999999999999999999 999     998876 59999999999999999999999999        8999


Q ss_pred             CCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHH
Q 048145          106 ENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKM  180 (578)
Q Consensus       106 ~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~  180 (578)
                      ++..+.+|++.++..++.+++..+++.     ..|..|.||||+|+        ..|+                .+++++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~--------~~~~----------------~~~~~~  143 (337)
T 4g8k_A           88 RKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAA--------VYGK----------------VKALKF  143 (337)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHH--------HTTC----------------HHHHHH
T ss_pred             hccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHH--------HcCc----------------HHHHHH
Confidence            999999999999999999999999987     57889999999999        7788                899999


Q ss_pred             HHhccccccccc-------cCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccc
Q 048145          181 LVEKRIDDCATH-------EKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDT  253 (578)
Q Consensus       181 Ll~~g~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~  253 (578)
                      |+++|++++...       .....|.||||+|+          ..++.++++.|+...              +.+++..|
T Consensus       144 ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~----------~~g~~~~v~~LL~~~--------------gad~n~~d  199 (337)
T 4g8k_A          144 LYKRGANVNLRRKTKEDQERLRKGGATALMDAA----------EKGHVEVLKILLDEM--------------GADVNACD  199 (337)
T ss_dssp             HHHTTCCTTCCCCCC-----CTTCSCCHHHHHH----------HHTCHHHHHHHHHHS--------------CCCTTCCC
T ss_pred             HHHcCCCcchhhccccccccccCCCCcHHHHHH----------HCCCHHHHHHHHhcc--------------CCCcCccC
Confidence            999999876542       22346789999884          445567777765321              12334445


Q ss_pred             cccccccccchhHHHHHHhcCH----HHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhh
Q 048145          254 TKDMTSSMRTMRILLFAVSNGI----IEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWAL  329 (578)
Q Consensus       254 ~~g~t~~~~g~~pLh~Aa~~G~----~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~  329 (578)
                      ..|.|       |+|.++..++    .+++++|++ .|++++.+|.+|+||||+|++.|+.+++++|++.    .+.++|
T Consensus       200 ~~g~t-------~l~~~~~~~~~~~~~~i~~lLl~-~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~----~~~~vn  267 (337)
T 4g8k_A          200 NMGRN-------ALIHALLSSDDSDVEAITHLLLD-HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ----EHIEIN  267 (337)
T ss_dssp             TTSCC-------HHHHHHHHSCTTTHHHHHHHHHH-TTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS----TTCCTT
T ss_pred             CCCCc-------HHHHHHHHcCcccHHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh----cCCccc
Confidence            56666       9998876433    467888887 8999999999999999999999999999999932    356799


Q ss_pred             cccCCCCchhhHHHhcccc
Q 048145          330 KIDNEGYTILHQVADMKYY  348 (578)
Q Consensus       330 ~~d~~G~T~LhlA~~~~~~  348 (578)
                      .+|.+|+||||+|++.|+.
T Consensus       268 ~~d~~G~TpL~~A~~~g~~  286 (337)
T 4g8k_A          268 DTDSDGKTALLLAVELKLK  286 (337)
T ss_dssp             CBCTTSCBHHHHHHHTTCH
T ss_pred             CcCCCCCCHHHHHHHcCCH
Confidence            9999999999999999975

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=5.7e-35  Score=279.04  Aligned_cols=208  Identities=19%  Similarity=0.183  Sum_probs=191.8

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN   80 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g   80 (578)
                      ||..|+.+.++.++.+  .+...+..+..|.||||+|+..|+.++|++|++. +.+     ++.+|..|+||||+|+..|
T Consensus        13 A~~~g~~~~v~~ll~~--~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~-----~~~~~~~g~t~L~~A~~~~   84 (231)
T 3aji_A           13 LAYSGKLDELKERILA--DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVP-----VNDKDDAGWSPLHIAASAG   84 (231)
T ss_dssp             HHHHTCHHHHHHHHHH--CGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCC-----SCCCCTTSCCHHHHHHHHT
T ss_pred             HHHhCCHHHHHHHHHh--chhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHh-CCC-----CCCcCCCCCCHHHHHHHcC
Confidence            5788999999999988  4556788899999999999999999999999999 888     9999999999999999999


Q ss_pred             CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhc
Q 048145           81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVI  155 (578)
Q Consensus        81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~  155 (578)
                      +.+++++|+++|+        +++.+|..|.||||+|+..|+.+++++|++.     ..+..|.||||+|+        .
T Consensus        85 ~~~~v~~Ll~~g~--------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~--------~  148 (231)
T 3aji_A           85 XDEIVKALLVKGA--------HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAA--------A  148 (231)
T ss_dssp             CHHHHHHHHHTTC--------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--------H
T ss_pred             HHHHHHHHHHcCC--------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHH--------H
Confidence            9999999999999        8999999999999999999999999999997     56788999999999        6


Q ss_pred             cCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCc
Q 048145          156 QGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCT  235 (578)
Q Consensus       156 ~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  235 (578)
                      .|+                .+++++|+++|++++..                                            
T Consensus       149 ~~~----------------~~~v~~Ll~~g~~~~~~--------------------------------------------  168 (231)
T 3aji_A          149 KGN----------------LKMVHILLFYKASTNIQ--------------------------------------------  168 (231)
T ss_dssp             HTC----------------HHHHHHHHHTTCCSCCC--------------------------------------------
T ss_pred             cCC----------------HHHHHHHHhcCCCcccc--------------------------------------------
Confidence            677                89999999988876543                                            


Q ss_pred             cccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHH
Q 048145          236 NKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEI  315 (578)
Q Consensus       236 ~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~  315 (578)
                                       |..|.|       |||+|+..|+.+++++|++ .|++++.+|.+|+||||+|++.++.+++++
T Consensus       169 -----------------~~~g~t-------~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i~~l  223 (231)
T 3aji_A          169 -----------------DTEGNT-------PLHLACDEERVEEAKFLVT-QGASIYIENKEEKTPLQVAKGGLGLILKRL  223 (231)
T ss_dssp             -----------------CTTSCC-------HHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHSCHHHHHHHHHH
T ss_pred             -----------------CCCCCC-------HHHHHHHCCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHhhHHHHHHHH
Confidence                             235666       9999999999999999998 899999999999999999999999999999


Q ss_pred             HH
Q 048145          316 IK  317 (578)
Q Consensus       316 Ll  317 (578)
                      |.
T Consensus       224 L~  225 (231)
T 3aji_A          224 AE  225 (231)
T ss_dssp             HH
T ss_pred             Hc
Confidence            98

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.1e-35  Score=295.73  Aligned_cols=258  Identities=18%  Similarity=0.173  Sum_probs=199.6

Q ss_pred             cccCChHHHHHHHhcCCchh-------hhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHH
Q 048145            2 ALKGDRQGFLRYFAQQTDEE-------LLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVH   74 (578)
Q Consensus         2 a~~G~~~~~~~ll~~~~~~~-------~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh   74 (578)
                      |.+|..+.+..++.+ ....       .....+..|.||||.||..|+.++|++|+++ +.+     ++.+|.+|.||||
T Consensus         6 a~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~-----~~~~~~~g~t~L~   78 (299)
T 1s70_B            6 AKQKRNEQLKRWIGS-ETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLER-GAD-----INYANVDGLTALH   78 (299)
T ss_dssp             HHHHHHHHHHHHHHT-TTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHH-CCC-----TTCBCTTCCBHHH
T ss_pred             HHHHHHHHHHHHHcc-ccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHc-CCC-----CcccCCCCCCHHH
Confidence            566777888888877 2211       1122344678999999999999999999999 899     9999999999999


Q ss_pred             HHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHH
Q 048145           75 ALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIA  149 (578)
Q Consensus        75 ~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~  149 (578)
                      +||..|+.+++++|+++|+        +++.+|..|.||||+|+.+|+.+++++|++.     ..+..|.||||+|+   
T Consensus        79 ~A~~~g~~~~v~~Ll~~ga--------~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~---  147 (299)
T 1s70_B           79 QACIDDNVDMVKFLVENGA--------NINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAE---  147 (299)
T ss_dssp             HHHHTTCHHHHHHHHHTTC--------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC---
T ss_pred             HHHHcCCHHHHHHHHHCCC--------CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHH---
Confidence            9999999999999999999        8999999999999999999999999999998     56789999999998   


Q ss_pred             HHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhc-cccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHH
Q 048145          150 IWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEK-RIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMI  228 (578)
Q Consensus       150 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~  228 (578)
                           ..|+                .++++.++.+ +.+++......   .+.                  .......+.
T Consensus       148 -----~~~~----------------~~~~~~ll~~~~~~~~~~~~~~---~~~------------------~~~~~~~~l  185 (299)
T 1s70_B          148 -----EEAM----------------EELLQNEVNRQGVDIEAARKEE---ERI------------------MLRDARQWL  185 (299)
T ss_dssp             -----SHHH----------------HHHHHHHHHHHTCCHHHHHHHH---HHH------------------HHHHHHHHH
T ss_pred             -----hcch----------------HHHHHHHHhhcCCCchhhhhhh---hhH------------------HHHHHHHHH
Confidence                 4444                6667666653 33222110000   000                  000000000


Q ss_pred             HHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhC
Q 048145          229 QVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYR  308 (578)
Q Consensus       229 ~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g  308 (578)
                      ...              .......+..|.|       |||+|+..|+.+++++|++ .|++++.+|.+|+||||+|+.+|
T Consensus       186 ~~~--------------~~~~~~~~~~g~t-------~L~~A~~~g~~~~v~~Ll~-~g~d~~~~d~~g~tpL~~A~~~~  243 (299)
T 1s70_B          186 NSG--------------HINDVRHAKSGGT-------ALHVAAAKGYTEVLKLLIQ-ARYDVNIKDYDGWTPLHAAAHWG  243 (299)
T ss_dssp             HHT--------------CCCCCCCTTTCCC-------HHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             hcc--------------CcchhhhcCCCCC-------HHHHHHHCCcHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHhcC
Confidence            000              0000111234444       9999999999999999998 89999999999999999999999


Q ss_pred             cHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcc
Q 048145          309 QLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMK  346 (578)
Q Consensus       309 ~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~  346 (578)
                      +.+++++|+     +.|++++.+|..|+||||+|++..
T Consensus       244 ~~~~v~~Ll-----~~gad~~~~d~~g~t~l~~A~~~~  276 (299)
T 1s70_B          244 KEEACRILV-----ENLCDMEAVNKVGQTAFDVADEDI  276 (299)
T ss_dssp             CHHHHHHHH-----HTTCCTTCCCTTSCCTTTSCCSGG
T ss_pred             CHHHHHHHH-----HcCCCCCCcCCCCCCHHHHHHHHH
Confidence            999999999     567789999999999999997643

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.7e-34  Score=280.03  Aligned_cols=204  Identities=18%  Similarity=0.174  Sum_probs=174.8

Q ss_pred             ChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHH
Q 048145            6 DRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVA   85 (578)
Q Consensus         6 ~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv   85 (578)
                      +.+.+..+++.  +..+.+..|..|.||||+|+..|+.++|++|+++ +++     ++.+|..|+||||+|+..|+.+++
T Consensus        35 ~~~~v~~Ll~~--g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~-----~~~~~~~g~t~L~~A~~~~~~~~v  106 (253)
T 1yyh_A           35 APAVISDFIYQ--GASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-SAD-----ANIQDNMGRTPLHAAVSADAQGVF  106 (253)
T ss_dssp             -------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCC-----TTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             ChHHHHHHHHc--cCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCC-----CCCCCCCCCCHHHHHHHcCCHHHH
Confidence            77766666665  5566677789999999999999999999999999 999     999999999999999999999999


Q ss_pred             HHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchH
Q 048145           86 KTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPA  160 (578)
Q Consensus        86 ~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~  160 (578)
                      ++|+++++       .+++.++..|.||||+|+..|+.+++++|++.     ..+..|.||||+|+        ..|+  
T Consensus       107 ~~Ll~~~~-------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~--------~~~~--  169 (253)
T 1yyh_A          107 QILIRNRA-------TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAA--------AVNN--  169 (253)
T ss_dssp             HHHHHSTT-------SCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHH--------HHTC--
T ss_pred             HHHHHcCC-------CCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHH--------HcCC--
Confidence            99999998       68899999999999999999999999999998     56788999999999        6677  


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCcccccc
Q 048145          161 IKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHV  240 (578)
Q Consensus       161 ~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~  240 (578)
                                    .+++++|+++|++++..                                                 
T Consensus       170 --------------~~~v~~Ll~~ga~~~~~-------------------------------------------------  186 (253)
T 1yyh_A          170 --------------VDAAVVLLKNGANKDMQ-------------------------------------------------  186 (253)
T ss_dssp             --------------HHHHHHHHHTTCCTTCC-------------------------------------------------
T ss_pred             --------------HHHHHHHHHcCCCCCCc-------------------------------------------------
Confidence                          89999999998876543                                                 


Q ss_pred             ccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHH
Q 048145          241 DQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIK  317 (578)
Q Consensus       241 ~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll  317 (578)
                                  |..|.|       |||+|+..|+.+++++|++ .|++++.+|..|+||||+|+++|+.+++++|.
T Consensus       187 ------------~~~g~t-------pL~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~  243 (253)
T 1yyh_A          187 ------------NNREET-------PLFLAAREGSYETAKVLLD-HFANRDITDHMDRLPRDIAQERMHHDIVRLLD  243 (253)
T ss_dssp             ------------CTTSCC-------HHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             ------------CCCCCC-------HHHHHHHCCCHHHHHHHHH-cCCCccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence                        235666       9999999999999999998 89999999999999999999999999999998

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.2e-34  Score=286.16  Aligned_cols=221  Identities=12%  Similarity=0.128  Sum_probs=195.0

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN   80 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g   80 (578)
                      ++.+++.+.+.++|.+ .   ..+..|..|.||||+|+..|+.++|++|++. +++     ++.+|  |+||||+|+..|
T Consensus         6 ~i~~~~~~~v~~lL~~-~---~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~-----~~~~~--g~t~L~~A~~~g   73 (285)
T 3kea_A            6 RINTWKSKQLKSFLSS-K---DTFKADVHGHSASYYAIADNNVRLVCTLLNA-GAL-----KNLLE--NEFPLHQAATLE   73 (285)
T ss_dssp             TGGGCCHHHHHHHHHS-T---TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TGG-----GSCCT--TCCHHHHHTTSS
T ss_pred             HHHhcCHHHHHHHHHh-C---CCCccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCC-----CCCCC--CCCHHHHHHHcC
Confidence            3567889999999998 3   2578899999999999999999999999999 888     88774  999999999999


Q ss_pred             CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCC-ccHHHHHHHHHHHHHh
Q 048145           81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAA-ISILSSKMYIAIWRQV  154 (578)
Q Consensus        81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g-~t~Lh~A~~~~~~~~~  154 (578)
                      +.+++++|+++|+        +++.+|..|.||||+|+.+|+.+++++|++.     ..+..| .||||+|+        
T Consensus        74 ~~~~v~~Ll~~ga--------~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~--------  137 (285)
T 3kea_A           74 DTKIVKILLFSGL--------DDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAV--------  137 (285)
T ss_dssp             SCHHHHHHHHTTC--------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHH--------
T ss_pred             CHHHHHHHHHCCC--------CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHH--------
Confidence            9999999999999        8999999999999999999999999999998     567778 89999999        


Q ss_pred             ccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCC
Q 048145          155 IQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGC  234 (578)
Q Consensus       155 ~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  234 (578)
                      ..|+                .+++++|+++|++....                                           
T Consensus       138 ~~~~----------------~~~v~~Ll~~g~~~~~~-------------------------------------------  158 (285)
T 3kea_A          138 MLND----------------VSIVSYFLSEIPSTFDL-------------------------------------------  158 (285)
T ss_dssp             HTTC----------------HHHHHHHHTTSCTTCCC-------------------------------------------
T ss_pred             HcCC----------------HHHHHHHHhCCCccccc-------------------------------------------
Confidence            7788                89999999987653111                                           


Q ss_pred             ccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChH-HHHHHHhCcHHHH
Q 048145          235 TNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNI-LHVAIMYRQLEIF  313 (578)
Q Consensus       235 ~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~-Lh~A~~~g~~~iv  313 (578)
                                         ..       |.||||+|+..|+.+++++|++ .|++++.+|..|+|| ||+|+++|+.+++
T Consensus       159 -------------------~~-------g~t~L~~A~~~g~~~~v~~Ll~-~gad~n~~~~~g~t~~L~~A~~~~~~~~v  211 (285)
T 3kea_A          159 -------------------AI-------LLSCIHITIKNGHVDMMILLLD-YMTSTNTNNSLLFIPDIKLAIDNKDIEML  211 (285)
T ss_dssp             -------------------ST-------HHHHHHHHHHTTCHHHHHHHHH-HHHHTCTTCCCBCCTTHHHHHHHTCHHHH
T ss_pred             -------------------cC-------CccHHHHHHHcChHHHHHHHHH-cCCCCCcccCCCCChHHHHHHHcCCHHHH
Confidence                               13       4459999999999999999998 699999999999998 9999999999999


Q ss_pred             HHHHHhhchhhhhhhhcccCCCCchhhHHHhccc
Q 048145          314 EIIKEKMQLSLAEWALKIDNEGYTILHQVADMKY  347 (578)
Q Consensus       314 ~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~  347 (578)
                      ++|+     +.|++++.+|.       .|+..++
T Consensus       212 ~~Ll-----~~gad~~~~~~-------~a~~~~~  233 (285)
T 3kea_A          212 QALF-----KYDINIYSANL-------ENVLLDD  233 (285)
T ss_dssp             HHHT-----TSCBCSTTTTG-------GGGTTTC
T ss_pred             HHHH-----HcCCCCCCCCh-------hhhhcCC
Confidence            9999     56777888883       4555554

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.4e-34  Score=284.95  Aligned_cols=254  Identities=15%  Similarity=0.124  Sum_probs=177.9

Q ss_pred             hhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----cccc
Q 048145           62 LMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQT  136 (578)
Q Consensus        62 l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~  136 (578)
                      ++.+|.+|+||||+||+.|+.+++++|++.|++.     ..++.+|..|.||||+|+..|+.+++++|+++     ..+.
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-----~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~   76 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGH-----EYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAER   76 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTS-----GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCT
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc-----ccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Confidence            6788999999999999999999999999999811     12889999999999999999999999999998     5678


Q ss_pred             CCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccC----------CCCCCchhhccc
Q 048145          137 AAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEK----------PTPGVTEISLGL  206 (578)
Q Consensus       137 ~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~----------~~~~~~~l~~~~  206 (578)
                      .|.||||+|+        ..|+                .+++++|+++|++.......          ...+.++++.+.
T Consensus        77 ~g~tpL~~A~--------~~~~----------------~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (282)
T 1oy3_D           77 GGHTALHLAC--------RVRA----------------HTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDS  132 (282)
T ss_dssp             TSCCHHHHHT--------TTTC----------------HHHHHHHSSSCCSSCCCC------------------------
T ss_pred             CCCCHHHHHH--------HcCC----------------cchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhcc
Confidence            9999999999        7888                89999999998765432110          001111111110


Q ss_pred             CCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHC
Q 048145          207 GKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKY  286 (578)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~  286 (578)
                      .                        ................+++..+..|.|       |||+|+..|+.+++++|++ .
T Consensus       133 ~------------------------~~~~~~~~~~~~~~~~~~~~~~~~g~t-------~L~~A~~~g~~~~v~~Ll~-~  180 (282)
T 1oy3_D          133 Q------------------------PNPENEEEPRDEDWRLQLEAENYDGHT-------PLHVAVIHKDAEMVRLLRD-A  180 (282)
T ss_dssp             -----------------------------------CCCGGGGTTCCCTTSCC-------HHHHHHHTTCHHHHHHHHH-H
T ss_pred             c------------------------cccchhhhhhhhhhhhcCCCcCCCCcC-------HHHHHHHcCCHHHHHHHHH-c
Confidence            0                        000000011111222334444555666       9999999999999999998 7


Q ss_pred             CCcccccccC-CChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcccccCCCCCChHHhHHHHHH
Q 048145          287 PQTLDNVNEK-GQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYYKQGTQAGPVLQFQDELE  365 (578)
Q Consensus       287 ~~~i~~~d~~-G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~~~~~~~~~~l~l~~~l~  365 (578)
                      |++++..+.. |+||||+|+++|+.+++++|+     +.|++++.+|..|+||||+|+..++.                 
T Consensus       181 g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll-----~~gad~~~~d~~g~tpL~~A~~~~~~-----------------  238 (282)
T 1oy3_D          181 GADLNKPEPTCGRTPLHLAVEAQAASVLELLL-----KAGADPTARMYGGRTPLGSALLRPNP-----------------  238 (282)
T ss_dssp             TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH-----HTTCCTTCCCTTSCCHHHHHHTSSCH-----------------
T ss_pred             CCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHH-----HcCCCCcccccCCCCHHHHHHHcCCc-----------------
Confidence            8899999865 999999999999999999999     56778999999999999999999865                 


Q ss_pred             HHHHHHhhCCCccccccccCCCCChhhhhhhhhHH
Q 048145          366 WFERVKDIAPPHYAMHRDKNKRMTANDLFDLTHED  400 (578)
Q Consensus       366 ~~~~v~~~~~~~~~~~~n~~~g~t~~~l~~~~~~~  400 (578)
                        +.++.++..+......+.+|+||.+.+......
T Consensus       239 --~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~~  271 (282)
T 1oy3_D          239 --ILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDS  271 (282)
T ss_dssp             --HHHHHHHHTTCCCCCCC----------------
T ss_pred             --HHHHHHHHcCCCcCcCCCcccccccccCCcccc
Confidence              344555555554444444999999987655443

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=9e-35  Score=297.66  Aligned_cols=240  Identities=12%  Similarity=0.058  Sum_probs=200.8

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN   80 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g   80 (578)
                      ||..|+.+.++.+++.   ....+..|..|.||||+|+..|+.++|++|++. +.+     +  .+.+|.||||+|+..|
T Consensus        27 Aa~~g~~~~v~~Ll~~---g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~-----~--~~~~g~t~L~~A~~~g   95 (364)
T 3ljn_A           27 AARKGQTDEVRRLIET---GVSPTIQNRFGCTALHLACKFGCVDTAKYLASV-GEV-----H--SLWHGQKPIHLAVMAN   95 (364)
T ss_dssp             HHHHTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHH-CCC-----C--CCBTTBCHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHc---CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHC-CCC-----c--cccCCCCHHHHHHHcC
Confidence            5788999988888876   345678899999999999999999999999999 765     3  3357999999999999


Q ss_pred             CHHHHHHHHhh----cCCCCCCCCCCccc-----------------CCCCCCCHHHHHHHcC--cHHHHHHHHHh-----
Q 048145           81 NVDVAKTLVEF----SKQSNDADKNPLVV-----------------ENKLGETPLYRAASVG--KIEALRYFAEQ-----  132 (578)
Q Consensus        81 ~~~iv~~Ll~~----g~~~~~~~~~~~~~-----------------~n~~g~TpLh~A~~~g--~~~iv~~Ll~~-----  132 (578)
                      +.+++++|++.    |.        +++.                 +|..|.||||+|+..|  +.+++++|++.     
T Consensus        96 ~~~~v~~Ll~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~  167 (364)
T 3ljn_A           96 KTDLVVALVEGAKERGQ--------MPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPT  167 (364)
T ss_dssp             CHHHHHHHHHHHHHHTC--------CHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTT
T ss_pred             CHHHHHHHHHhccccCC--------CHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCc
Confidence            99999999999    55        4444                 8889999999999999  99999999998     


Q ss_pred             ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCcc
Q 048145          133 VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIE  212 (578)
Q Consensus       133 ~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~  212 (578)
                      ..|..|.||||+|+        ..|+                .+++++|+++|++....                     
T Consensus       168 ~~d~~g~t~L~~A~--------~~g~----------------~~~v~~Ll~~g~~~~~~---------------------  202 (364)
T 3ljn_A          168 AKDKADETPLMRAM--------EFRN----------------REALDLMMDTVPSKSSL---------------------  202 (364)
T ss_dssp             CCCTTSCCHHHHHH--------HTTC----------------HHHHHHHHHHCSCSSSC---------------------
T ss_pred             ccCCCCCCHHHHHH--------HcCC----------------HHHHHHHHhcccccccc---------------------
Confidence            56789999999999        7788                89999999998873211                     


Q ss_pred             ccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccc
Q 048145          213 KKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDN  292 (578)
Q Consensus       213 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~  292 (578)
                                                         +++..|..|.|       |||+|+..|+.+++++|++ .|++++.
T Consensus       203 -----------------------------------~~~~~~~~g~t-------~L~~A~~~g~~~~v~~Ll~-~gad~~~  239 (364)
T 3ljn_A          203 -----------------------------------RLDYANKQGNS-------HLHWAILINWEDVAMRFVE-MGIDVNM  239 (364)
T ss_dssp             -----------------------------------CTTCCCTTCCC-------TTHHHHTTTCHHHHHHHHT-TTCCTTC
T ss_pred             -----------------------------------cccccCCCCCc-------HHHHHHHcCCHHHHHHHHH-cCCCCCC
Confidence                                               11222345666       9999999999999999998 8999999


Q ss_pred             cccCCChHHHHHHHhCcHHHHHHHHHhhchhh--------hhhhhcccCCCCchhhHHHhcccc
Q 048145          293 VNEKGQNILHVAIMYRQLEIFEIIKEKMQLSL--------AEWALKIDNEGYTILHQVADMKYY  348 (578)
Q Consensus       293 ~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~--------~~~~~~~d~~G~T~LhlA~~~~~~  348 (578)
                      .|.+|+||||+|++.|+.+++++|+ +.+.+.        .......+..|+|||++|+..++.
T Consensus       240 ~d~~g~tpL~~A~~~g~~~~v~~Ll-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~  302 (364)
T 3ljn_A          240 EDNEHTVPLYLSVRAAMVLLTKELL-QKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSK  302 (364)
T ss_dssp             CCTTSCCHHHHHHHTCCHHHHHHHH-HHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHH
T ss_pred             CCCCCCCHHHHHHHhChHHHHHHHH-HcCCchhhhcCcccCcccccccccccccchhhhhccCH
Confidence            9999999999999999999999999 333211        011112678899999999988854

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=3.6e-34  Score=271.95  Aligned_cols=209  Identities=18%  Similarity=0.179  Sum_probs=182.2

Q ss_pred             CChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHH
Q 048145            5 GDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDV   84 (578)
Q Consensus         5 G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~i   84 (578)
                      |+.+.++.+++.  +..+.+..|..|.||||+|+..|+.++|++|+++ +.+     ++.+|..|+||||+|+..|+.++
T Consensus         2 g~~~~i~~Ll~~--g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~-----~~~~~~~g~t~L~~A~~~~~~~~   73 (223)
T 2f8y_A            2 DAPAVISDFIYQ--GASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-SAD-----ANIQDNMGRTPLHAAVSADAQGV   73 (223)
T ss_dssp             ---CCEETTEET--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCC-----TTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             CcHHHHHHHHHc--CCCcccccCCCCCchHHHHHHcCCHHHHHHHHHc-CCC-----CCCcCCCCCCHHHHHHHcCCHHH
Confidence            344433333433  5556666789999999999999999999999999 899     99999999999999999999999


Q ss_pred             HHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCch
Q 048145           85 AKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCP  159 (578)
Q Consensus        85 v~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~  159 (578)
                      +++|+++++       .+++.++..|.||||+|+..|+.+++++|++.     ..+..|.||||+|+        ..|+ 
T Consensus        74 v~~Ll~~~~-------~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~--------~~~~-  137 (223)
T 2f8y_A           74 FQILIRNRA-------TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAA--------AVNN-  137 (223)
T ss_dssp             HHHHHHBTT-------SCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHH--------HTTC-
T ss_pred             HHHHHHcCC-------CCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHH--------HcCC-
Confidence            999999998       68899999999999999999999999999998     56788999999999        7777 


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccc
Q 048145          160 AIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAH  239 (578)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l  239 (578)
                                     .+++++|+++|++++..                                                
T Consensus       138 ---------------~~~v~~Ll~~g~~~~~~------------------------------------------------  154 (223)
T 2f8y_A          138 ---------------VDAAVVLLKNGANKDMQ------------------------------------------------  154 (223)
T ss_dssp             ---------------HHHHHHHHHTTCCTTCC------------------------------------------------
T ss_pred             ---------------HHHHHHHHHcCCCCCCc------------------------------------------------
Confidence                           89999999998876543                                                


Q ss_pred             cccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHh
Q 048145          240 VDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEK  319 (578)
Q Consensus       240 ~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~  319 (578)
                                   |..|.|       |||+|++.|+.+++++|++ .+++++.+|..|+||||+|+++++.+++++|+ +
T Consensus       155 -------------~~~g~t-------~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~-~  212 (223)
T 2f8y_A          155 -------------NNREET-------PLFLAAREGSYETAKVLLD-HFANRDITDHMDRLPRDIAQERMHHDIVRLLD-E  212 (223)
T ss_dssp             -------------CTTCCC-------HHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-H
T ss_pred             -------------CCCCcC-------HHHHHHHcCCHHHHHHHHH-cCCCCccccccCCCHHHHHHHhcchHHHHHHH-H
Confidence                         235566       9999999999999999998 89999999999999999999999999999999 5


Q ss_pred             hch
Q 048145          320 MQL  322 (578)
Q Consensus       320 ~~~  322 (578)
                      ++.
T Consensus       213 ~g~  215 (223)
T 2f8y_A          213 YNL  215 (223)
T ss_dssp             TTC
T ss_pred             cCC
Confidence            443

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=6.5e-34  Score=289.16  Aligned_cols=232  Identities=17%  Similarity=0.142  Sum_probs=194.7

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN   80 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g   80 (578)
                      |+..|+.+.++.+++.   +...+..|..|.||||+|+..|+.++|++|+++ +++     ++.+|..|.||||+|+..|
T Consensus        65 A~~~g~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~-g~~-----~~~~~~~g~t~L~~A~~~~  135 (351)
T 3utm_A           65 AAGYNRVRIVQLLLQH---GADVHAKDKGGLVPLHNACSYGHYEVTELLLKH-GAC-----VNAMDLWQFTPLHEAASKN  135 (351)
T ss_dssp             HHHTTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCC-----TTCCCTTCCCHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHc---CCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHC-CCC-----CCCCCCCCCCHHHHHHHcC
Confidence            5778999977777766   445677899999999999999999999999999 999     9999999999999999999


Q ss_pred             CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHH---------------------Hh-----cc
Q 048145           81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFA---------------------EQ-----VN  134 (578)
Q Consensus        81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll---------------------~~-----~~  134 (578)
                      +.+++++|+++|+        +++..+..|.||+|+|+..+..+.+++..                     ..     ..
T Consensus       136 ~~~~v~~Ll~~g~--------~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  207 (351)
T 3utm_A          136 RVEVCSLLLSHGA--------DPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQ  207 (351)
T ss_dssp             CHHHHHHHHHTTC--------CTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCC
T ss_pred             CHHHHHHHHHcCC--------CCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccC
Confidence            9999999999999        89999999999998876655555544433                     32     23


Q ss_pred             ccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCcccc
Q 048145          135 QTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKK  214 (578)
Q Consensus       135 ~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  214 (578)
                      +..|.||||+|+        ..+++             ...+++++|+++|.+++..                       
T Consensus       208 ~~~~~t~L~~A~--------~~~~~-------------~~~~~~~~Ll~~g~~~~~~-----------------------  243 (351)
T 3utm_A          208 PQSHETALHCAV--------ASLHP-------------KRKQVAELLLRKGANVNEK-----------------------  243 (351)
T ss_dssp             TTTCCCHHHHHH--------HCCST-------------THHHHHHHHHHTTCCTTCC-----------------------
T ss_pred             CCCCCCHHHHHH--------HHhCc-------------cHHHHHHHHHHcCCCcCCc-----------------------
Confidence            466788888887        33220             0167788888877765433                       


Q ss_pred             ccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccc
Q 048145          215 VVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVN  294 (578)
Q Consensus       215 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d  294 (578)
                                                            |..|.|       |||+|++.|+.+++++|++ .|++++.+|
T Consensus       244 --------------------------------------~~~g~t-------~L~~A~~~g~~~~v~~Ll~-~ga~~n~~d  277 (351)
T 3utm_A          244 --------------------------------------NKDFMT-------PLHVAAERAHNDVMEVLHK-HGAKMNALD  277 (351)
T ss_dssp             --------------------------------------CTTCCC-------HHHHHHHTTCHHHHHHHHH-TTCCTTCCC
T ss_pred             --------------------------------------CCCCCC-------HHHHHHHcCCHHHHHHHHH-CCCCCCCcC
Confidence                                                  235666       9999999999999999998 899999999


Q ss_pred             cCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHh
Q 048145          295 EKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVAD  344 (578)
Q Consensus       295 ~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~  344 (578)
                      ..|+||||+|+++|+.+++++|+     +.|++++.+|.+|+||+|+|..
T Consensus       278 ~~g~t~L~~A~~~~~~~~v~~Ll-----~~gad~~~~~~~g~tal~~a~~  322 (351)
T 3utm_A          278 SLGQTALHRAALAGHLQTCRLLL-----SYGSDPSIISLQGFTAAQMGNE  322 (351)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHH-----HTTCCTTCCCTTSCCHHHHSCH
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHH-----HcCCCCCCcCCCCCChhhhhhH
Confidence            99999999999999999999999     5677899999999999999853

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=7.1e-35  Score=299.21  Aligned_cols=241  Identities=15%  Similarity=0.121  Sum_probs=195.2

Q ss_pred             ccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccC-CCCChHHHHHHHcCCHHHHHHHH--------hhcCC
Q 048145           24 GYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTD-DNGNTAVHALATINNVDVAKTLV--------EFSKQ   94 (578)
Q Consensus        24 ~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d-~~G~TpLh~Aa~~g~~~iv~~Ll--------~~g~~   94 (578)
                      +..+..|.||||+||..|+ ++++.|+.   .+     ++.+| ..|+||||+||..|+.+++++|+        +.|+ 
T Consensus        88 ~~~~~~g~t~L~~Aa~~~~-~~~~~L~~---~~-----~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga-  157 (373)
T 2fo1_E           88 TEPEPESPIKLHTEAAGSY-AITEPITR---ES-----VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGA-  157 (373)
T ss_dssp             ------CCCHHHHHHHSSS-CCCSCCST---TT-----TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCC-
T ss_pred             cCCCCCCccHHHHHhcCCc-hHHHHhcc---cc-----ccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCC-
Confidence            4568899999999999654 78877754   34     78888 79999999999999998888776        7888 


Q ss_pred             CCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhh
Q 048145           95 SNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQ  169 (578)
Q Consensus        95 ~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~  169 (578)
                             +++.+|..|.||||+|+.+|+.++|++|++.     ..+..|.||||+|+        ..|+           
T Consensus       158 -------~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~--------~~g~-----------  211 (373)
T 2fo1_E          158 -------DVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAA--------ANRD-----------  211 (373)
T ss_dssp             -------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHH--------HTTC-----------
T ss_pred             -------CCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHH--------HCCC-----------
Confidence                   8999999999999999999999999999998     56789999999999        7788           


Q ss_pred             hhHHHHHHHHHHHhcc---ccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCccc
Q 048145          170 IHKKAVALVKMLVEKR---IDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQA  246 (578)
Q Consensus       170 ~~~~~~~~v~~Ll~~g---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~  246 (578)
                           .+++++|++++   .+++                                                         
T Consensus       212 -----~~~v~~Ll~~~~~~~~~~---------------------------------------------------------  229 (373)
T 2fo1_E          212 -----FGMMVYMLNSTKLKGDIE---------------------------------------------------------  229 (373)
T ss_dssp             -----HHHHHHHTTSHHHHHTTS---------------------------------------------------------
T ss_pred             -----HHHHHHHHhcCccccChh---------------------------------------------------------
Confidence                 89999999876   3332                                                         


Q ss_pred             ccccccccccccccccchhHHHHHHhcC---HHHHHHHHHHHCCCcccc--------cccCCChHHHHHHHhCcHHHHHH
Q 048145          247 VDQENDTTKDMTSSMRTMRILLFAVSNG---IIEILEEIRHKYPQTLDN--------VNEKGQNILHVAIMYRQLEIFEI  315 (578)
Q Consensus       247 ~~~~~~~~~g~t~~~~g~~pLh~Aa~~G---~~~iv~~Ll~~~~~~i~~--------~d~~G~t~Lh~A~~~g~~~iv~~  315 (578)
                          ..|..|.|       |||+|+..|   +.+++++|++ .+.+++.        .|..|+||||+|+.+|+.+++++
T Consensus       230 ----~~d~~g~t-------~L~~A~~~~~~~~~~~v~~Ll~-~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~  297 (373)
T 2fo1_E          230 ----ELDRNGMT-------ALMIVAHNEGRDQVASAKLLVE-KGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKY  297 (373)
T ss_dssp             ----CCCTTSCC-------HHHHHHHSCSTTHHHHHHHHHH-HTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHH
T ss_pred             ----hcCCCCCC-------HHHHHHHhCCcchHHHHHHHHH-CCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHH
Confidence                22335566       999999998   9999999998 6777775        67799999999999999999999


Q ss_pred             HHHhhchhhhhhhhcccCCCCchhhHHHhcccccCCCCCChHHhHHHHHHHHHHHHhhCCCccccccccCCCCChhhhhh
Q 048145          316 IKEKMQLSLAEWALKIDNEGYTILHQVADMKYYKQGTQAGPVLQFQDELEWFERVKDIAPPHYAMHRDKNKRMTANDLFD  395 (578)
Q Consensus       316 Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~~~~~~~~~~l~l~~~l~~~~~v~~~~~~~~~~~~n~~~g~t~~~l~~  395 (578)
                      |++..    +++++.+|.+|+||||+|+..|+.                   +.++.++..+......+.+|+||.+++.
T Consensus       298 Ll~~~----~~~~n~~d~~g~TpL~~A~~~g~~-------------------~iv~~Ll~~gad~~~~d~~g~t~l~~A~  354 (373)
T 2fo1_E          298 LVGEK----GSNKDKQDEDGKTPIMLAAQEGRI-------------------EVVMYLIQQGASVEAVDATDHTARQLAQ  354 (373)
T ss_dssp             HHHHS----CCCTTCCCTTCCCHHHHHHHHTCH-------------------HHHHHHHHTTCCSSCCCSSSCCHHHHHH
T ss_pred             HHHhc----CCCccCcCCCCCCHHHHHHHcCCH-------------------HHHHHHHHcCCCccCCCCCCCCHHHHHH
Confidence            99221    267999999999999999999975                   3444455444444433449999999876


Q ss_pred             hh
Q 048145          396 LT  397 (578)
Q Consensus       396 ~~  397 (578)
                      +.
T Consensus       355 ~~  356 (373)
T 2fo1_E          355 AN  356 (373)
T ss_dssp             HT
T ss_pred             Hc
Confidence            54

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.2e-33  Score=271.00  Aligned_cols=213  Identities=15%  Similarity=0.133  Sum_probs=189.8

Q ss_pred             ccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCc
Q 048145           24 GYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPL  103 (578)
Q Consensus        24 ~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~  103 (578)
                      +..|..|.||||.|+..|+.+++++|++. +.+     ++.+|..|.||||+|+..|+.+++++|++.|+        ++
T Consensus         3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~-g~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~--------~~   68 (240)
T 3eu9_A            3 THIDDYSTWDIVKATQYGIYERCRELVEA-GYD-----VRQPDKENVTLLHWAAINNRIDLVKYYISKGA--------IV   68 (240)
T ss_dssp             CCCSCGGGCCHHHHHHTTCHHHHHHHHHT-TCC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC--------CT
T ss_pred             cccccccchHHHHHHHcCChHHHHHHHHc-CCC-----cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCC--------cc
Confidence            45688999999999999999999999998 899     99999999999999999999999999999999        44


Q ss_pred             c-cCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHH
Q 048145          104 V-VENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVAL  177 (578)
Q Consensus       104 ~-~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~  177 (578)
                      + ..+..|.||||+|+..|+.+++++|++.     ..+..|.||||+|+        ..|+                .++
T Consensus        69 ~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~--------~~~~----------------~~~  124 (240)
T 3eu9_A           69 DQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAA--------QFGH----------------TSI  124 (240)
T ss_dssp             TCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--------HTTC----------------HHH
T ss_pred             hhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH--------HcCH----------------HHH
Confidence            4 4556699999999999999999999997     46788999999999        7777                899


Q ss_pred             HHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccc
Q 048145          178 VKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDM  257 (578)
Q Consensus       178 v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~  257 (578)
                      +++|+++|.+++..                                                             +..|.
T Consensus       125 ~~~Ll~~~~~~~~~-------------------------------------------------------------~~~g~  143 (240)
T 3eu9_A          125 VAYLIAKGQDVDMM-------------------------------------------------------------DQNGM  143 (240)
T ss_dssp             HHHHHHTTCCTTCC-------------------------------------------------------------CTTSC
T ss_pred             HHHHHhcCCCcccc-------------------------------------------------------------CCCCC
Confidence            99999988876433                                                             23555


Q ss_pred             cccccchhHHHHHHhcCH-HHHHHHHHHHCCCccccccc-CCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCC
Q 048145          258 TSSMRTMRILLFAVSNGI-IEILEEIRHKYPQTLDNVNE-KGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEG  335 (578)
Q Consensus       258 t~~~~g~~pLh~Aa~~G~-~~iv~~Ll~~~~~~i~~~d~-~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G  335 (578)
                      |       |||+|+..|+ .++++.|++ .+.+++..+. .|+||||+|+.+|+.+++++|+     +.|++++.+|.+|
T Consensus       144 t-------~l~~a~~~~~~~~~~~~L~~-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-----~~g~~~~~~~~~g  210 (240)
T 3eu9_A          144 T-------PLMWAAYRTHSVDPTRLLLT-FNVSVNLGDKYHKNTALHWAVLAGNTTVISLLL-----EAGANVDAQNIKG  210 (240)
T ss_dssp             C-------HHHHHHHHCCSSTTHHHHHH-TTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHH-----HHTCCTTCBCTTS
T ss_pred             c-------HHHHHHHhCChHHHHHHHHh-cCCCcchhhccCCCcHHHHHHHcCCHHHHHHHH-----HcCCCCCCcCCCC
Confidence            6       9999997776 788888887 8899999987 9999999999999999999999     5677899999999


Q ss_pred             CchhhHHHhcccc
Q 048145          336 YTILHQVADMKYY  348 (578)
Q Consensus       336 ~T~LhlA~~~~~~  348 (578)
                      +||||+|++.++.
T Consensus       211 ~t~l~~A~~~~~~  223 (240)
T 3eu9_A          211 ESALDLAKQRKNV  223 (240)
T ss_dssp             CBHHHHHHHTTCH
T ss_pred             CCHHHHHHHcCcH
Confidence            9999999999865

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=6.4e-35  Score=279.83  Aligned_cols=212  Identities=17%  Similarity=0.181  Sum_probs=182.0

Q ss_pred             ccCCCCCCcHHHHHHhcCChHHHHHHHccCC---CchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCC
Q 048145           24 GYRTFNGECAIHVAAAMEDPELIKKFLGRLP---VEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADK  100 (578)
Q Consensus        24 ~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~---~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~  100 (578)
                      +.+|.+|+||||+|+..|+.++++.|++...   .+     ++.+|..|+||||+|+..|+.+++++|+++|+       
T Consensus         2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-------   69 (236)
T 1ikn_D            2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAF-----LNFQNNLQQTPLHLAVITNQPEIAEALLGAGC-------   69 (236)
T ss_dssp             -----CCCCTTHHHHHTTCSSSSSCCCC-----CCC-----CCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCC-------
T ss_pred             CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHH-----hhccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-------
Confidence            3568899999999999999999999998722   36     88999999999999999999999999999999       


Q ss_pred             CCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----------ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhh
Q 048145          101 NPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----------VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQ  169 (578)
Q Consensus       101 ~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----------~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~  169 (578)
                       +++.+|..|.||||+|+..|+.+++++|++.           ..+..|.||||+|+        ..|+           
T Consensus        70 -~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~--------~~~~-----------  129 (236)
T 1ikn_D           70 -DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS--------IHGY-----------  129 (236)
T ss_dssp             -CSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHH--------HTTC-----------
T ss_pred             -CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHH--------HcCC-----------
Confidence             8999999999999999999999999999986           34678999999999        7787           


Q ss_pred             hhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccc
Q 048145          170 IHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQ  249 (578)
Q Consensus       170 ~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~  249 (578)
                           .+++++|+++|++++..                                                          
T Consensus       130 -----~~~v~~Ll~~g~~~~~~----------------------------------------------------------  146 (236)
T 1ikn_D          130 -----LGIVELLVSLGADVNAQ----------------------------------------------------------  146 (236)
T ss_dssp             -----HHHHHHHHHHTCCTTCC----------------------------------------------------------
T ss_pred             -----HHHHHHHHHcCCCCCCC----------------------------------------------------------
Confidence                 89999999999876543                                                          


Q ss_pred             ccccc-ccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhh
Q 048145          250 ENDTT-KDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWA  328 (578)
Q Consensus       250 ~~~~~-~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~  328 (578)
                         +. .|.|       |||+|+..|+.+++++|++ .|++++..|..|+||||+|+.+|+.+++++|+ +    .|++.
T Consensus       147 ---~~~~g~t-------pL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll-~----~ga~~  210 (236)
T 1ikn_D          147 ---EPCNGRT-------ALHLAVDLQNPDLVSLLLK-CGADVNRVTYQGYSPYQLTWGRPSTRIQQQLG-Q----LTLEN  210 (236)
T ss_dssp             ---CTTTCCC-------HHHHHHHTTCHHHHHHHHT-TTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHH-T----TSCGG
T ss_pred             ---CCCCCCC-------HHHHHHHcCCHHHHHHHHH-cCCCCCcccCCCCCHHHHHHccCchHHHHHHH-H----cchhh
Confidence               12 4556       9999999999999999998 89999999999999999999999999999999 4    44444


Q ss_pred             h--cccCCCCchhhHHHhcc
Q 048145          329 L--KIDNEGYTILHQVADMK  346 (578)
Q Consensus       329 ~--~~d~~G~T~LhlA~~~~  346 (578)
                      .  .++.+|.||.+.+....
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~  230 (236)
T 1ikn_D          211 LQMLPESEDEESYDTESEFT  230 (236)
T ss_dssp             GSSCCCCCTTTCCCCC----
T ss_pred             hhcCCccchHHHHhhhcccc
Confidence            4  78999999999887654

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.4e-32  Score=263.47  Aligned_cols=213  Identities=17%  Similarity=0.203  Sum_probs=184.6

Q ss_pred             hhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----cccc
Q 048145           62 LMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQT  136 (578)
Q Consensus        62 l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~  136 (578)
                      ++.+|.+|.||||+|+..|+.+++++|+++|+        +++..+..|.||||+|+.+|+.+++++|++.     ..+.
T Consensus         4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~--------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~   75 (237)
T 3b7b_A            4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGA--------NIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDA   75 (237)
T ss_dssp             CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTC--------CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCT
T ss_pred             cccccCCCCCHHHHHHHcCcHHHHHHHHHcCC--------CcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCC
Confidence            77889999999999999999999999999999        8999999999999999999999999999998     5678


Q ss_pred             CCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhcc-ccccccccCCCCCCchhhcccCCCCccccc
Q 048145          137 AAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKR-IDDCATHEKPTPGVTEISLGLGKGNIEKKV  215 (578)
Q Consensus       137 ~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  215 (578)
                      .|.||||+|+        ..|+                .+++++|+++| .+++..                        
T Consensus        76 ~g~t~L~~A~--------~~~~----------------~~~~~~Ll~~~~~~~~~~------------------------  107 (237)
T 3b7b_A           76 EGSTCLHLAA--------KKGH----------------YEVVQYLLSNGQMDVNCQ------------------------  107 (237)
T ss_dssp             TSCCHHHHHH--------HTTC----------------HHHHHHHHTTTCCCTTCC------------------------
T ss_pred             CCCcHHHHHH--------HcCC----------------HHHHHHHHhCCCCCcccC------------------------
Confidence            8999999999        7787                89999999987 333221                        


Q ss_pred             cccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCccccccc
Q 048145          216 VDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNE  295 (578)
Q Consensus       216 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~  295 (578)
                                                           +..|.|       |||+|+..|+.+++++|++ .+.+++..|.
T Consensus       108 -------------------------------------~~~g~t-------~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~  142 (237)
T 3b7b_A          108 -------------------------------------DDGGWT-------PMIWATEYKHVDLVKLLLS-KGSDINIRDN  142 (237)
T ss_dssp             -------------------------------------CTTSCC-------HHHHHHHTTCHHHHHHHHH-TTCCTTCCCT
T ss_pred             -------------------------------------CCCCCC-------HHHHHHHcCCHHHHHHHHH-CCCCCCccCC
Confidence                                                 234555       9999999999999999998 8999999999


Q ss_pred             CCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcccccCCCCCChHHhHHHHHHHHHHHHhhCC
Q 048145          296 KGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYYKQGTQAGPVLQFQDELEWFERVKDIAP  375 (578)
Q Consensus       296 ~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~~~~~~~~~~l~l~~~l~~~~~v~~~~~  375 (578)
                      .|+||||+|+..|+.+++++|+     +.|++++.+|..|+||||+|+..++.                   +.++.++.
T Consensus       143 ~g~t~L~~A~~~~~~~~~~~Ll-----~~g~~~~~~~~~g~t~L~~A~~~~~~-------------------~~v~~Ll~  198 (237)
T 3b7b_A          143 EENICLHWAAFSGCVDIAEILL-----AAKCDLHAVNIHGDSPLHIAARENRY-------------------DCVVLFLS  198 (237)
T ss_dssp             TSCCHHHHHHHHCCHHHHHHHH-----TTTCCTTCCCTTCCCHHHHHHHTTCH-------------------HHHHHHHT
T ss_pred             CCCCHHHHHHHCCCHHHHHHHH-----HcCCCCCCcCCCCCCHHHHHHHhCCH-------------------hHHHHHHH
Confidence            9999999999999999999999     56778999999999999999999864                   34455555


Q ss_pred             CccccccccCCCCChhhhhhhhhH
Q 048145          376 PHYAMHRDKNKRMTANDLFDLTHE  399 (578)
Q Consensus       376 ~~~~~~~n~~~g~t~~~l~~~~~~  399 (578)
                      .+......+.+|+||.+++.....
T Consensus       199 ~gad~~~~d~~g~t~l~~A~~~~~  222 (237)
T 3b7b_A          199 RDSDVTLKNKEGETPLQCASLNSQ  222 (237)
T ss_dssp             TTCCTTCCCTTSCCHHHHSCTTCH
T ss_pred             cCCCCCccCCCCCCHHHHHHHHHH
Confidence            555444444499999999865543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.9e-34  Score=280.46  Aligned_cols=206  Identities=16%  Similarity=0.151  Sum_probs=156.1

Q ss_pred             CcccCChHHHHHHHhcCCch------hhhccCCCCCCcHHHHHHhcCCh-HHHHHHHccCCCchhhhhhhccCCCCChHH
Q 048145            1 MALKGDRQGFLRYFAQQTDE------ELLGYRTFNGECAIHVAAAMEDP-ELIKKFLGRLPVEKRLEALMQTDDNGNTAV   73 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~------~~~~~~~~~g~T~Lh~Aa~~g~~-~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpL   73 (578)
                      ||..|+.+.++.+|+. ...      ...+..+..|.||||.|+..++. ++++.|++. |++     ++.+|.+|+|||
T Consensus        18 A~~~G~~~~v~~LL~~-~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~-Gad-----vn~~d~~G~TpL   90 (269)
T 4b93_B           18 AVADGDLEMVRYLLEW-TEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPAS-GLG-----VNVTSQDGSSPL   90 (269)
T ss_dssp             HHHTTCHHHHHHHHTC-C----------------------------------------C-CCC-----TTCCCTTSCCHH
T ss_pred             HHHcCCHHHHHHHHHC-CCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHC-CCC-----CCCcCCCCCCHH
Confidence            6889999988888876 221      12456678899999999998886 488999998 999     999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHH
Q 048145           74 HALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYI  148 (578)
Q Consensus        74 h~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~  148 (578)
                      |+||..|+.+++++|++.|+        +++.++..|.||+|.|+..++.+++++|++.     ..|..|.||||+|+  
T Consensus        91 h~A~~~g~~~~v~~Ll~~~a--------~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~--  160 (269)
T 4b93_B           91 HVAALHGRADLIPLLLKHGA--------NAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYAC--  160 (269)
T ss_dssp             HHHHHTTCTTHHHHHHHTTC--------CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHH--
T ss_pred             HHHHHcCcHHHHHHHHhcCC--------CcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHH--
Confidence            99999999999999999999        8999999999999999999999999999998     57889999999999  


Q ss_pred             HHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHH
Q 048145          149 AIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMI  228 (578)
Q Consensus       149 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~  228 (578)
                            ..|+                .+++++|+++|++++..                                     
T Consensus       161 ------~~g~----------------~~~v~~Ll~~gadvn~~-------------------------------------  181 (269)
T 4b93_B          161 ------SGGH----------------HELVALLLQHGASINAS-------------------------------------  181 (269)
T ss_dssp             ------HTTC----------------GGGHHHHHHTTCCTTCB-------------------------------------
T ss_pred             ------HCCC----------------HHHHHHHHHCCCCCCcc-------------------------------------
Confidence                  7788                89999999999876543                                     


Q ss_pred             HHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhC
Q 048145          229 QVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYR  308 (578)
Q Consensus       229 ~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g  308 (578)
                                              +..|.|       |||+|+..|+.++|++|++ .|++++.+|.+|+||||+|++++
T Consensus       182 ------------------------~~~g~t-------~Lh~A~~~g~~~~v~~Ll~-~Gad~~~~d~~G~TpL~~A~~~~  229 (269)
T 4b93_B          182 ------------------------NNKGNT-------ALHEAVIEKHVFVVELLLL-HGASVQVLNKRQRTAVDCAEQNS  229 (269)
T ss_dssp             ------------------------CTTSCB-------HHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCSGGGSCTTC
T ss_pred             ------------------------ccCCCc-------HHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHhCC
Confidence                                    235666       9999999999999999998 89999999999999999999877


Q ss_pred             cHHHHHHH
Q 048145          309 QLEIFEII  316 (578)
Q Consensus       309 ~~~iv~~L  316 (578)
                      +  ++++|
T Consensus       230 ~--i~~lL  235 (269)
T 4b93_B          230 K--IMELL  235 (269)
T ss_dssp             H--HHHHT
T ss_pred             c--HHHHH
Confidence            5  44444

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=2e-33  Score=266.76  Aligned_cols=196  Identities=17%  Similarity=0.163  Sum_probs=175.9

Q ss_pred             CChHHHHHHHccCCCchhhhhhhcc-CCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHH
Q 048145           41 EDPELIKKFLGRLPVEKRLEALMQT-DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAAS  119 (578)
Q Consensus        41 g~~~~v~~Ll~~~~~~~~~~~l~~~-d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~  119 (578)
                      |+.+++++|+++ +.+     ++.. |.+|+||||+|+..|+.+++++|+++|+        +++.+|..|.||||+|+.
T Consensus         2 g~~~~i~~Ll~~-g~~-----~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~--------~~~~~~~~g~t~L~~A~~   67 (223)
T 2f8y_A            2 DAPAVISDFIYQ-GAS-----LHNQTDRTGETALHLAARYSRSDAAKRLLEASA--------DANIQDNMGRTPLHAAVS   67 (223)
T ss_dssp             ---CCEETTEET-TCC-----TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC--------CTTCCCTTSCCHHHHHHH
T ss_pred             CcHHHHHHHHHc-CCC-----cccccCCCCCchHHHHHHcCCHHHHHHHHHcCC--------CCCCcCCCCCCHHHHHHH
Confidence            778899999998 777     7665 8999999999999999999999999999        899999999999999999


Q ss_pred             cCcHHHHHHHHHh------ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhcccccccccc
Q 048145          120 VGKIEALRYFAEQ------VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHE  193 (578)
Q Consensus       120 ~g~~~iv~~Ll~~------~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~  193 (578)
                      .|+.+++++|++.      ..+..|.||||+|+        ..|+                .+++++|+++|++++..  
T Consensus        68 ~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~--------~~~~----------------~~~~~~Ll~~g~~~~~~--  121 (223)
T 2f8y_A           68 ADAQGVFQILIRNRATDLDARMHDGTTPLILAA--------RLAV----------------EGMLEDLINSHADVNAV--  121 (223)
T ss_dssp             TTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHH--------HHTC----------------HHHHHHHHHTTCCTTCB--
T ss_pred             cCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHH--------HhCc----------------HHHHHHHHHcCCCCcCc--
Confidence            9999999999987      45788999999999        6677                89999999988876543  


Q ss_pred             CCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhc
Q 048145          194 KPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSN  273 (578)
Q Consensus       194 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~  273 (578)
                                                                                 |..|.|       |||+|+..
T Consensus       122 -----------------------------------------------------------~~~g~t-------~L~~A~~~  135 (223)
T 2f8y_A          122 -----------------------------------------------------------DDLGKS-------ALHWAAAV  135 (223)
T ss_dssp             -----------------------------------------------------------CTTSCB-------HHHHHHHT
T ss_pred             -----------------------------------------------------------CCCCCc-------HHHHHHHc
Confidence                                                                       235566       99999999


Q ss_pred             CHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcccc
Q 048145          274 GIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYY  348 (578)
Q Consensus       274 G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~  348 (578)
                      |+.+++++|++ .+++++.+|..|+||||+|+++|+.+++++|+     +.|++++.+|..|+||||+|++.++.
T Consensus       136 ~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-----~~ga~~~~~~~~g~t~l~~A~~~~~~  204 (223)
T 2f8y_A          136 NNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLL-----DHFANRDITDHMDRLPRDIAQERMHH  204 (223)
T ss_dssp             TCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH-----HTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             CCHHHHHHHHH-cCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHH-----HcCCCCccccccCCCHHHHHHHhcch
Confidence            99999999998 79999999999999999999999999999999     56778999999999999999999875

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=2.1e-33  Score=269.91  Aligned_cols=214  Identities=16%  Similarity=0.163  Sum_probs=186.9

Q ss_pred             CcccCChHHHHHHHhcC-CchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHc
Q 048145            1 MALKGDRQGFLRYFAQQ-TDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATI   79 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~-~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~   79 (578)
                      ||..|+.+.++.+++.. ..+...+..|..|.||||+|+..|+.+++++|++. +.+     ++.+|..|.||||+|+..
T Consensus        16 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~-----~~~~~~~g~t~l~~A~~~   89 (241)
T 1k1a_A           16 AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA-GAS-----PMALDRHGQTAAHLACEH   89 (241)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCC-----TTCCCTTSCCHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc-CCC-----ccccCCCCCCHHHHHHHc
Confidence            67889999888887610 02445677889999999999999999999999998 999     999999999999999999


Q ss_pred             CCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccc-cCCccHHHHHHHHHHHHH
Q 048145           80 NNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQ-TAAISILSSKMYIAIWRQ  153 (578)
Q Consensus        80 g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~-~~g~t~Lh~A~~~~~~~~  153 (578)
                      |+.+++++|++.++...    .+++..|..|.||||+|+..|+.+++++|++.     ..+ ..|.||||+|+       
T Consensus        90 ~~~~~~~~Ll~~~~~~~----~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~-------  158 (241)
T 1k1a_A           90 RSPTCLRALLDSAAPGT----LDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAV-------  158 (241)
T ss_dssp             TCHHHHHHHHHHSCTTS----CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHH-------
T ss_pred             CCHHHHHHHHHcCCCcc----ccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHH-------
Confidence            99999999999987110    26788899999999999999999999999998     234 78999999999       


Q ss_pred             hccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcC
Q 048145          154 VIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKG  233 (578)
Q Consensus       154 ~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  233 (578)
                       ..|+                .+++++|+++|++++..                                          
T Consensus       159 -~~~~----------------~~~v~~Ll~~g~~~~~~------------------------------------------  179 (241)
T 1k1a_A          159 -ENNS----------------LSMVQLLLQHGANVNAQ------------------------------------------  179 (241)
T ss_dssp             -HTTC----------------HHHHHHHHHTTCCTTCB------------------------------------------
T ss_pred             -HcCC----------------HHHHHHHHHcCCCCCCc------------------------------------------
Confidence             7787                89999999998876543                                          


Q ss_pred             CccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHH
Q 048145          234 CTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIF  313 (578)
Q Consensus       234 ~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv  313 (578)
                                         |..|.|       |||+|+..|+.+++++|++ .|++++.+|.+|+||||+|+..|+.+++
T Consensus       180 -------------------~~~g~t-------~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~i~  232 (241)
T 1k1a_A          180 -------------------MYSGSS-------ALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPLMVARSRRVIDIL  232 (241)
T ss_dssp             -------------------CTTSCB-------HHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCTTTTCSSHHHHHHH
T ss_pred             -------------------CCCCCC-------HHHHHHHcCCHHHHHHHHh-cCCCCCCcCCCCCCHHHHHHhcCcHHHH
Confidence                               235666       9999999999999999998 8999999999999999999999999999


Q ss_pred             HHHH
Q 048145          314 EIIK  317 (578)
Q Consensus       314 ~~Ll  317 (578)
                      +.|.
T Consensus       233 ~~l~  236 (241)
T 1k1a_A          233 RGKA  236 (241)
T ss_dssp             TC--
T ss_pred             hhhc
Confidence            9988

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=1.9e-32  Score=261.74  Aligned_cols=188  Identities=21%  Similarity=0.178  Sum_probs=164.7

Q ss_pred             CCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCC
Q 048145           29 NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENK  108 (578)
Q Consensus        29 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~  108 (578)
                      .|+||||+|++.|+.++|+.|++..+.+     ++.+|.+|+||||+|+..|+.+++++|+++|++...   ...+.+|.
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~-----~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~---~~~~~~~~   73 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCE-----VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVF---EPMTSELY   73 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGG---CCCCSTTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCC-----cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhcc---ccccccCC
Confidence            5899999999999999999999987888     999999999999999999999999999999981100   01266788


Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHHh-----ccc-------------cCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhh
Q 048145          109 LGETPLYRAASVGKIEALRYFAEQ-----VNQ-------------TAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQI  170 (578)
Q Consensus       109 ~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~-------------~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~  170 (578)
                      .|.||||+|+.+|+.+++++|++.     ..+             ..|.||||+|+        ..|+            
T Consensus        74 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~--------~~~~------------  133 (232)
T 2rfa_A           74 EGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAA--------CVGS------------  133 (232)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHH--------HHTC------------
T ss_pred             CCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHH--------HcCC------------
Confidence            999999999999999999999998     222             26999999999        6677            


Q ss_pred             hHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCccccccc
Q 048145          171 HKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQE  250 (578)
Q Consensus       171 ~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~  250 (578)
                          .+++++|+++|++++..                                                           
T Consensus       134 ----~~~v~~Ll~~ga~~~~~-----------------------------------------------------------  150 (232)
T 2rfa_A          134 ----EEIVRLLIEHGADIRAQ-----------------------------------------------------------  150 (232)
T ss_dssp             ----HHHHHHHHHTTCCTTCC-----------------------------------------------------------
T ss_pred             ----HHHHHHHHHCCCCCCCC-----------------------------------------------------------
Confidence                89999999998876543                                                           


Q ss_pred             ccccccccccccchhHHHHHHhcCHHHHH----HHHHHHCCCcc------cccccCCChHHHHHHHhCcHHHHHHHH
Q 048145          251 NDTTKDMTSSMRTMRILLFAVSNGIIEIL----EEIRHKYPQTL------DNVNEKGQNILHVAIMYRQLEIFEIIK  317 (578)
Q Consensus       251 ~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv----~~Ll~~~~~~i------~~~d~~G~t~Lh~A~~~g~~~iv~~Ll  317 (578)
                        |..|+|       |||+|+..|+.+++    ++|++ .++++      +..|.+|+||||+|+++|+.+++++|+
T Consensus       151 --d~~g~t-------~L~~A~~~~~~~~~~~i~~~Ll~-~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll  217 (232)
T 2rfa_A          151 --DSLGNT-------VLHILILQPNKTFACQMYNLLLS-YDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLM  217 (232)
T ss_dssp             --CTTSCC-------HHHHHHTCSCHHHHHHHHHHHHH-TTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             --CCCCCC-------HHHHHHHcCChHHHHHHHHHHHh-cCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence              235666       99999999999988    99998 77766      689999999999999999999999999

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=7.1e-33  Score=263.87  Aligned_cols=206  Identities=19%  Similarity=0.224  Sum_probs=182.5

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCC--Cchhhhhhhc-cCCCCChHHHHHH
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLP--VEKRLEALMQ-TDDNGNTAVHALA   77 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~--~~~~~~~l~~-~d~~G~TpLh~Aa   77 (578)
                      |+..|+.+.++.++++  .....+..|..|.||||+|+..|+.+++++|++. +  .+     ++. +|..|+||||+|+
T Consensus         9 A~~~g~~~~v~~Ll~~--~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~-----~~~~~~~~g~t~L~~A~   80 (228)
T 2dzn_A            9 ACMENEFFKVQELLHS--KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK-MENVN-----LDDYPDDSGWTPFHIAC   80 (228)
T ss_dssp             HHHTTCHHHHHHHHHH--CGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-CTTCC-----GGGCCCTTSCCHHHHHH
T ss_pred             HHHhCCHHHHHHHHhc--CccccccCCCCCCCHHHHHHHcCCHHHHHHHHhc-ccccc-----ccccCCCCCCCHHHHHH
Confidence            6789999988888888  5566677899999999999999999999999999 6  55     666 8899999999999


Q ss_pred             HcCCHHHHHHHHhhc--CCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHH
Q 048145           78 TINNVDVAKTLVEFS--KQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAI  150 (578)
Q Consensus        78 ~~g~~~iv~~Ll~~g--~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~  150 (578)
                      ..|+.+++++|+++|  +        +++.++..|.||||+|+..|+.+++++|++.     ..+..|.||||+|+    
T Consensus        81 ~~~~~~~~~~Ll~~g~~~--------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~----  148 (228)
T 2dzn_A           81 SVGNLEVVKSLYDRPLKP--------DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAA----  148 (228)
T ss_dssp             HHCCHHHHHHHHSSSSCC--------CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH----
T ss_pred             HcCCHHHHHHHHhCCCCc--------ccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHH----
Confidence            999999999999998  5        7889999999999999999999999999998     56789999999999    


Q ss_pred             HHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhcc-ccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHH
Q 048145          151 WRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKR-IDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQ  229 (578)
Q Consensus       151 ~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  229 (578)
                          ..|+                .+++++|+++| .+++..                                      
T Consensus       149 ----~~~~----------------~~~v~~Ll~~g~~~~~~~--------------------------------------  170 (228)
T 2dzn_A          149 ----SVGS----------------LKLIELLCGLGKSAVNWQ--------------------------------------  170 (228)
T ss_dssp             ----HTTC----------------HHHHHHHHTTTCCCSCCC--------------------------------------
T ss_pred             ----HcCC----------------HHHHHHHHhcCcccccCc--------------------------------------
Confidence                7777                89999999988 554332                                      


Q ss_pred             HhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCc
Q 048145          230 VKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQ  309 (578)
Q Consensus       230 ~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~  309 (578)
                                             |..|+|       |||+|+..|+.+++++|++..|++++.+|.+|+||||+|++.  
T Consensus       171 -----------------------d~~g~t-------~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~--  218 (228)
T 2dzn_A          171 -----------------------DKQGWT-------PLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE--  218 (228)
T ss_dssp             -----------------------CTTSCC-------HHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST--
T ss_pred             -----------------------CCCCCC-------HHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH--
Confidence                                   235666       999999999999999999558999999999999999999765  


Q ss_pred             HHHHHHHH
Q 048145          310 LEIFEIIK  317 (578)
Q Consensus       310 ~~iv~~Ll  317 (578)
                       +++++|+
T Consensus       219 -~~~~~l~  225 (228)
T 2dzn_A          219 -QVKKFFL  225 (228)
T ss_dssp             -THHHHHH
T ss_pred             -HHHHHHH
Confidence             5667776

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=9.1e-32  Score=250.98  Aligned_cols=185  Identities=21%  Similarity=0.240  Sum_probs=167.6

Q ss_pred             CCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccC
Q 048145           27 TFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVE  106 (578)
Q Consensus        27 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~  106 (578)
                      +..+.||||.|+..|+.+.|+.|++..+.+     ++.+|.+|+||||+|++.|+.+++++|+++|+        +++.+
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--------~~~~~   68 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQ-----VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGA--------DINLQ   68 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCC-----TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC--------CTTCC
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCC-----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC--------CCCCC
Confidence            457899999999999999999999985558     99999999999999999999999999999999        89999


Q ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHHh------ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHH
Q 048145          107 NKLGETPLYRAASVGKIEALRYFAEQ------VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKM  180 (578)
Q Consensus       107 n~~g~TpLh~A~~~g~~~iv~~Ll~~------~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~  180 (578)
                      |..|.||||+|+..|+.+++++|++.      ..+..|.||||+|+        ..|+                .+++++
T Consensus        69 ~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~--------~~~~----------------~~~v~~  124 (201)
T 3hra_A           69 NSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAA--------EKGH----------------IDNVKL  124 (201)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHH--------HTTC----------------HHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHH--------HcCC----------------HHHHHH
Confidence            99999999999999999999999966      56788999999999        7777                899999


Q ss_pred             HHhcc-ccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccc
Q 048145          181 LVEKR-IDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTS  259 (578)
Q Consensus       181 Ll~~g-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~  259 (578)
                      |+++| .+++..                                                             |..|.| 
T Consensus       125 Ll~~g~~~~~~~-------------------------------------------------------------~~~g~t-  142 (201)
T 3hra_A          125 LLEDGREDIDFQ-------------------------------------------------------------NDFGYT-  142 (201)
T ss_dssp             HHHHCCCCTTCC-------------------------------------------------------------CTTSCC-
T ss_pred             HHHcCCCCcCCC-------------------------------------------------------------CCCCCC-
Confidence            99987 554332                                                             235566 


Q ss_pred             cccchhHHHHHHhcCH-----HHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHH
Q 048145          260 SMRTMRILLFAVSNGI-----IEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIK  317 (578)
Q Consensus       260 ~~~g~~pLh~Aa~~G~-----~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll  317 (578)
                            |||+|+..|+     .+++++|++ .|++++.+|.+|+||||+|+++|+.+++++|+
T Consensus       143 ------~L~~A~~~~~~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll  198 (201)
T 3hra_A          143 ------ALIEAVGLREGNQLYQDIVKLLME-NGADQSIKDNSGRTAMDYANQKGYTEISKILA  198 (201)
T ss_dssp             ------HHHHHHHSSCCSHHHHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             ------HHHHHHHhccchhhHHHHHHHHHH-CCCCCCccCCCCCCHHHHHHHcCCHhHHHHHH
Confidence                  9999999887     999999998 89999999999999999999999999999998

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=5e-33  Score=280.10  Aligned_cols=246  Identities=15%  Similarity=0.185  Sum_probs=177.4

Q ss_pred             cccCChHHHHHHHhcCCchhhhcc-----------------CCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhc
Q 048145            2 ALKGDRQGFLRYFAQQTDEELLGY-----------------RTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQ   64 (578)
Q Consensus         2 a~~G~~~~~~~ll~~~~~~~~~~~-----------------~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~   64 (578)
                      +..|+.+.++.++++  .-. .+.                 ......+.+|.|+..+..++++.|++. +.+     ++.
T Consensus        55 ~~~g~~~~v~~Ll~~--g~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~-g~d-----vn~  125 (327)
T 1sw6_A           55 NDNEQKMKLEAFLQR--LLF-PEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNT-QLN-----LNI  125 (327)
T ss_dssp             CCHHHHHHHHHHHHH--HHC--------------------------------CHHHHHHHHHHHCTTS-CCC-----SCS
T ss_pred             ccCchhHHHHHHHHh--ccC-CccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhc-CCC-----ccc
Confidence            345788877778776  211 111                 111223346888888889999999988 999     999


Q ss_pred             -cCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCc---HHHHHHHHHh------cc
Q 048145           65 -TDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGK---IEALRYFAEQ------VN  134 (578)
Q Consensus        65 -~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~---~~iv~~Ll~~------~~  134 (578)
                       +|.+|+||||+||..|+.++|++|+++|+        +++.+|..|.||||+|+.+|+   .++++.|++.      ..
T Consensus       126 ~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Ga--------d~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~  197 (327)
T 1sw6_A          126 PVDEHGNTPLHWLTSIANLELVKHLVKHGS--------NRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE  197 (327)
T ss_dssp             CCSTTCCCHHHHHHHTTCHHHHHHHHHTTC--------CTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEE
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHcCC--------CCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCC
Confidence             89999999999999999999999999999        899999999999999999999   6777777765      57


Q ss_pred             ccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCcccc
Q 048145          135 QTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKK  214 (578)
Q Consensus       135 ~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  214 (578)
                      |..|.||||+|+...    ...|+                .+++++|++.+..+.......    ...            
T Consensus       198 d~~g~tpLh~A~~~~----~~~g~----------------~~~v~~Ll~~~~~~~~~~~~~----~i~------------  241 (327)
T 1sw6_A          198 DSMNRTILHHIIITS----GMTGC----------------SAAAKYYLDILMGWIVKKQNR----PIQ------------  241 (327)
T ss_dssp             CTTCCCHHHHHHHHH----TSTTC----------------HHHHHHHHHHHHHHHHHGGGC----CEE------------
T ss_pred             CCCCCCHHHHHHHHc----ccccc----------------HHHHHHHHHHHHHHHhcccch----HHH------------
Confidence            899999999999321    01566                889999998766443221000    000            


Q ss_pred             ccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccc
Q 048145          215 VVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVN  294 (578)
Q Consensus       215 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d  294 (578)
                                               ........+++..+..|.|       |||.|+.      +++|++.   +++.+|
T Consensus       242 -------------------------~~~~~~g~~~~~~~~~g~t-------~L~~a~~------~~~Ll~~---~~n~~d  280 (327)
T 1sw6_A          242 -------------------------SGTNEKESKPNDKNGERKD-------SILENLD------LKWIIAN---MLNAQD  280 (327)
T ss_dssp             -------------------------EC----------------C-------HHHHHCS------HHHHHHH---TTTCCC
T ss_pred             -------------------------hhhhcccCCcccccccCCC-------hhHHHHH------HHHHHHh---CCCCCC
Confidence                                     0000112333444445555       9999996      8999985   599999


Q ss_pred             cCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcc
Q 048145          295 EKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMK  346 (578)
Q Consensus       295 ~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~  346 (578)
                      .+|+||||+|+++|+.+++++|+     +.|++++.+|.+|+||||+|++.|
T Consensus       281 ~~G~TpLh~A~~~g~~~~v~~Ll-----~~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          281 SNGDTCLNIAARLGNISIVDALL-----DYGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             TTSCCHHHHHHHHCCHHHHHHHH-----HTTCCTTCCCTTSCCGGGGTCC--
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHH-----HcCCCCcccCCCCCCHHHHHHhcC
Confidence            99999999999999999999999     567889999999999999999764

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.98  E-value=4.1e-32  Score=269.84  Aligned_cols=244  Identities=17%  Similarity=0.164  Sum_probs=189.6

Q ss_pred             HHHhcCChHHHHHHHccCCCchhh----hhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCC
Q 048145           36 VAAAMEDPELIKKFLGRLPVEKRL----EALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGE  111 (578)
Q Consensus        36 ~Aa~~g~~~~v~~Ll~~~~~~~~~----~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~  111 (578)
                      .++..|+.+.++.++.. ..+-..    ......+..|.||||.||..|+.+++++|+++|+        +++.+|..|.
T Consensus         4 ~~a~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~--------~~~~~~~~g~   74 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGS-ETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGA--------DINYANVDGL   74 (299)
T ss_dssp             HHHHHHHHHHHHHHHHT-TTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCC--------CTTCBCTTCC
T ss_pred             hHHHHHHHHHHHHHHcc-ccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCC--------CCcccCCCCC
Confidence            56777888888887766 222000    0011224468899999999999999999999999        8999999999


Q ss_pred             CHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccc
Q 048145          112 TPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRI  186 (578)
Q Consensus       112 TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~  186 (578)
                      ||||+|+..|+.+++++|++.     ..+..|.||||+|+        ..|+                .+++++|+++|+
T Consensus        75 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~--------~~g~----------------~~~v~~Ll~~g~  130 (299)
T 1s70_B           75 TALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAA--------SCGY----------------LDIAEYLISQGA  130 (299)
T ss_dssp             BHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--------HHTC----------------HHHHHHHHHTTC
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH--------HcCC----------------HHHHHHHHhCCC
Confidence            999999999999999999998     56788999999999        6777                899999999988


Q ss_pred             cccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhH
Q 048145          187 DDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRI  266 (578)
Q Consensus       187 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~p  266 (578)
                      +++..                                                             |..|.|       |
T Consensus       131 ~~~~~-------------------------------------------------------------~~~g~t-------~  142 (299)
T 1s70_B          131 HVGAV-------------------------------------------------------------NSEGDT-------P  142 (299)
T ss_dssp             CTTCC-------------------------------------------------------------CTTSCC-------H
T ss_pred             CCCCc-------------------------------------------------------------CCCCCC-------H
Confidence            76544                                                             123444       7


Q ss_pred             HHHHHhcCHHHHHHHHHHHCCCccc--------------------------ccccCCChHHHHHHHhCcHHHHHHHHHhh
Q 048145          267 LLFAVSNGIIEILEEIRHKYPQTLD--------------------------NVNEKGQNILHVAIMYRQLEIFEIIKEKM  320 (578)
Q Consensus       267 Lh~Aa~~G~~~iv~~Ll~~~~~~i~--------------------------~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~  320 (578)
                      ||+|+..|+.++++.++...+.+++                          ..+..|.||||+|+.+|+.+++++|+   
T Consensus       143 l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll---  219 (299)
T 1s70_B          143 LDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI---  219 (299)
T ss_dssp             HHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHH---
T ss_pred             HHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHH---
Confidence            7777777777777766665554443                          35678999999999999999999999   


Q ss_pred             chhhhhhhhcccCCCCchhhHHHhcccccCCCCCChHHhHHHHHHHHHHHHhhCCCccccccccCCCCChhhhhhhhhHH
Q 048145          321 QLSLAEWALKIDNEGYTILHQVADMKYYKQGTQAGPVLQFQDELEWFERVKDIAPPHYAMHRDKNKRMTANDLFDLTHED  400 (578)
Q Consensus       321 ~~~~~~~~~~~d~~G~T~LhlA~~~~~~~~~~~~~~~l~l~~~l~~~~~v~~~~~~~~~~~~n~~~g~t~~~l~~~~~~~  400 (578)
                        +.|++++.+|.+|+||||+|+..|+.                   +.++.++..+......+..|+||.+++.+...+
T Consensus       220 --~~g~d~~~~d~~g~tpL~~A~~~~~~-------------------~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~  278 (299)
T 1s70_B          220 --QARYDVNIKDYDGWTPLHAAAHWGKE-------------------EACRILVENLCDMEAVNKVGQTAFDVADEDILG  278 (299)
T ss_dssp             --TTTCCTTCCCTTCCCHHHHHHHTTCH-------------------HHHHHHHHTTCCTTCCCTTSCCTTTSCCSGGGH
T ss_pred             --HcCCCCCCcCCCCCcHHHHHHhcCCH-------------------HHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHH
Confidence              56778999999999999999999975                   344444544544444344999999998776555


Q ss_pred             HHHH
Q 048145          401 QLRK  404 (578)
Q Consensus       401 ~~~~  404 (578)
                      .+++
T Consensus       279 ~l~~  282 (299)
T 1s70_B          279 YLEE  282 (299)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.98  E-value=2.5e-31  Score=254.83  Aligned_cols=209  Identities=15%  Similarity=0.161  Sum_probs=183.0

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhcc-CCCCChHHHHHHHc
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQT-DDNGNTAVHALATI   79 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~-d~~G~TpLh~Aa~~   79 (578)
                      |+..|+.+.++.+++.   +...+..+..|.||||+|+..|+.++|++|+++ +.+     ++.. +..|.||||+|+..
T Consensus        16 A~~~g~~~~~~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~-----~~~~~~~~~~t~L~~A~~~   86 (240)
T 3eu9_A           16 ATQYGIYERCRELVEA---GYDVRQPDKENVTLLHWAAINNRIDLVKYYISK-GAI-----VDQLGGDLNSTPLHWATRQ   86 (240)
T ss_dssp             HHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCC-----TTCCBTTTTBCHHHHHHHH
T ss_pred             HHHcCChHHHHHHHHc---CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHc-CCc-----chhhcCCcCCChhHHHHHc
Confidence            6788999988888877   345677889999999999999999999999999 766     6544 45699999999999


Q ss_pred             CCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHh
Q 048145           80 NNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQV  154 (578)
Q Consensus        80 g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~  154 (578)
                      |+.+++++|++.|+        +++.++..|.||||+|+..|+.+++++|++.     ..+..|.||||+|+.       
T Consensus        87 ~~~~~v~~Ll~~g~--------~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~-------  151 (240)
T 3eu9_A           87 GHLSMVVQLMKYGA--------DPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAY-------  151 (240)
T ss_dssp             TCHHHHHHHHHTTC--------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH-------
T ss_pred             CCHHHHHHHHHcCC--------CCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHH-------
Confidence            99999999999999        8899999999999999999999999999998     567899999999993       


Q ss_pred             ccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCC
Q 048145          155 IQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGC  234 (578)
Q Consensus       155 ~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  234 (578)
                       .|+               ..+++++|++.|.+++....                                         
T Consensus       152 -~~~---------------~~~~~~~L~~~~~~~~~~~~-----------------------------------------  174 (240)
T 3eu9_A          152 -RTH---------------SVDPTRLLLTFNVSVNLGDK-----------------------------------------  174 (240)
T ss_dssp             -HCC---------------SSTTHHHHHHTTCCTTCCCT-----------------------------------------
T ss_pred             -hCC---------------hHHHHHHHHhcCCCcchhhc-----------------------------------------
Confidence             332               05788899998887654310                                         


Q ss_pred             ccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHH
Q 048145          235 TNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFE  314 (578)
Q Consensus       235 ~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~  314 (578)
                                         ..|.|       |||+|+..|+.+++++|++ .|++++..|..|+||||+|+++|+.++++
T Consensus       175 -------------------~~g~t-------~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~v~  227 (240)
T 3eu9_A          175 -------------------YHKNT-------ALHWAVLAGNTTVISLLLE-AGANVDAQNIKGESALDLAKQRKNVWMIN  227 (240)
T ss_dssp             -------------------TTCCC-------HHHHHHHHTCHHHHHHHHH-HTCCTTCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred             -------------------cCCCc-------HHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCcHHHHH
Confidence                               14555       9999999999999999998 68999999999999999999999999999


Q ss_pred             HHH
Q 048145          315 IIK  317 (578)
Q Consensus       315 ~Ll  317 (578)
                      +|+
T Consensus       228 ~L~  230 (240)
T 3eu9_A          228 HLQ  230 (240)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            999

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=2e-31  Score=261.33  Aligned_cols=215  Identities=16%  Similarity=0.105  Sum_probs=162.4

Q ss_pred             hccCCCCCCcHHHHHHhcCChHHHHHHHcc---CCCchhhhhhh----ccCCCCChHHHHHHHc---CCHHHHHHHHhhc
Q 048145           23 LGYRTFNGECAIHVAAAMEDPELIKKFLGR---LPVEKRLEALM----QTDDNGNTAVHALATI---NNVDVAKTLVEFS   92 (578)
Q Consensus        23 ~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~---~~~~~~~~~l~----~~d~~G~TpLh~Aa~~---g~~~iv~~Ll~~g   92 (578)
                      .+..|..|+||||.|++.|+.++|+.|++.   .+.+     ++    .+|..|+||||+|+..   |+.+++++|+++|
T Consensus         6 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-----~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g   80 (273)
T 2pnn_A            6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKR-----LTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA   80 (273)
T ss_dssp             -----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCC-----TTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred             CCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccc-----cCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence            355788999999999999999999999974   2444     43    4588999999999986   9999999999998


Q ss_pred             CCCCCCC---CCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----cccc--------------CCccHHHHHHHHHH
Q 048145           93 KQSNDAD---KNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQT--------------AAISILSSKMYIAI  150 (578)
Q Consensus        93 ~~~~~~~---~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~--------------~g~t~Lh~A~~~~~  150 (578)
                      ++.+...   ......+|..|.||||+|+..|+.+++++|++.     ..+.              .|.||||+|+    
T Consensus        81 a~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~----  156 (273)
T 2pnn_A           81 RKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAA----  156 (273)
T ss_dssp             HHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHH----
T ss_pred             ccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHH----
Confidence            7211000   001223677899999999999999999999998     3343              7999999999    


Q ss_pred             HHHhccCchHHHHHHHhhhhhHHHHHHHHHHHh---ccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHH
Q 048145          151 WRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVE---KRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELM  227 (578)
Q Consensus       151 ~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~---~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  227 (578)
                          ..|+                .+++++|++   +|++++..                                    
T Consensus       157 ----~~g~----------------~~~v~~Ll~~~~~gad~~~~------------------------------------  180 (273)
T 2pnn_A          157 ----CTNQ----------------LAIVKFLLQNSWQPADISAR------------------------------------  180 (273)
T ss_dssp             ----HTTC----------------HHHHHHHHHCSSCCCCTTCC------------------------------------
T ss_pred             ----HcCC----------------HHHHHHHHhcccCCCCceee------------------------------------
Confidence                7788                899999999   77766543                                    


Q ss_pred             HHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCH---------HHHHHHHHHHCCCccc-------
Q 048145          228 IQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGI---------IEILEEIRHKYPQTLD-------  291 (578)
Q Consensus       228 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~---------~~iv~~Ll~~~~~~i~-------  291 (578)
                                               |..|+|       |||+|+..|+         .+++++|++ .+++++       
T Consensus       181 -------------------------d~~g~t-------pLh~A~~~~~~~~~~~~~~~~~v~~Ll~-~ga~~n~~~~~~~  227 (273)
T 2pnn_A          181 -------------------------DSVGNT-------VLHALVEVADNTVDNTKFVTSMYNEILI-LGAKLHPTLKLEE  227 (273)
T ss_dssp             -------------------------CTTSCC-------HHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHHHHCTTCCGGG
T ss_pred             -------------------------CCCCCc-------HHHHHHHccCcchhHHHHHHHHHHHHHH-hhhhccccccccc
Confidence                                     335666       9999999998         899999998 788886       


Q ss_pred             ccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhh-hhhcccCCCCchhh
Q 048145          292 NVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAE-WALKIDNEGYTILH  340 (578)
Q Consensus       292 ~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~-~~~~~d~~G~T~Lh  340 (578)
                      .+|.+|+||||+|+++|+.+++++|+     +.|+ +.......+.+|-|
T Consensus       228 ~~d~~g~TpL~~A~~~g~~~iv~~Ll-----~~ga~dp~~~~~~~~~~~~  272 (273)
T 2pnn_A          228 ITNRKGLTPLALAASSGKIGVLAYIL-----QREIHEPECRHAAAHHHHH  272 (273)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHH-----HHHTC--------------
T ss_pred             ccCCCCCCHHHHHHHhChHHHHHHHH-----HCCCCCchhhhhhhhhccC
Confidence            58999999999999999999999999     4555 66766666666543

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=5.9e-32  Score=259.16  Aligned_cols=217  Identities=15%  Similarity=0.157  Sum_probs=171.7

Q ss_pred             hccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccC
Q 048145           63 MQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTA  137 (578)
Q Consensus        63 ~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~  137 (578)
                      +.+|.+|+||||+|+..|+.++++.|++.+...    ..+++.+|..|.||||+|+..|+.+++++|++.     ..+..
T Consensus         2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~   77 (236)
T 1ikn_D            2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGD----LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFR   77 (236)
T ss_dssp             -----CCCCTTHHHHHTTCSSSSSCCCC---------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTT
T ss_pred             CcCCCCCCchhHHHHHcCChhHHHHHHHHhhcc----HHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC
Confidence            357889999999999999999999999987611    026889999999999999999999999999987     56789


Q ss_pred             CccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccc
Q 048145          138 AISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVD  217 (578)
Q Consensus       138 g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  217 (578)
                      |.||||+|+        ..|+                .+++++|+++|.+.....                         
T Consensus        78 g~t~L~~A~--------~~~~----------------~~~v~~Ll~~~~~~~~~~-------------------------  108 (236)
T 1ikn_D           78 GNTPLHLAC--------EQGC----------------LASVGVLTQSCTTPHLHS-------------------------  108 (236)
T ss_dssp             CCCHHHHHH--------HHTC----------------HHHHHHHHHSTTTTSSSC-------------------------
T ss_pred             CCCHHHHHH--------HcCC----------------HHHHHHHHhcccchhHHH-------------------------
Confidence            999999999        6677                899999999887543210                         


Q ss_pred             cchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCccccccc-C
Q 048145          218 VSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNE-K  296 (578)
Q Consensus       218 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~-~  296 (578)
                                                    ..+..+..|.|       |||+|+..|+.+++++|++ .+++++..|. .
T Consensus       109 ------------------------------~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~~  150 (236)
T 1ikn_D          109 ------------------------------ILKATNYNGHT-------CLHLASIHGYLGIVELLVS-LGADVNAQEPCN  150 (236)
T ss_dssp             ------------------------------GGGCCCTTCCC-------HHHHHHHTTCHHHHHHHHH-HTCCTTCCCTTT
T ss_pred             ------------------------------HhhccCCCCCC-------HHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCC
Confidence                                          01222335555       9999999999999999998 7899999998 9


Q ss_pred             CChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcccccCCCCCChHHhHHHHHHHHHHHHhhCCC
Q 048145          297 GQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYYKQGTQAGPVLQFQDELEWFERVKDIAPP  376 (578)
Q Consensus       297 G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~~~~~~~~~~l~l~~~l~~~~~v~~~~~~  376 (578)
                      |+||||+|+..|+.+++++|+     +.|++++.+|..|+||||+|+..++.                   +.++.++..
T Consensus       151 g~tpL~~A~~~~~~~~v~~Ll-----~~ga~~~~~~~~g~tpl~~A~~~~~~-------------------~~~~~Ll~~  206 (236)
T 1ikn_D          151 GRTALHLAVDLQNPDLVSLLL-----KCGADVNRVTYQGYSPYQLTWGRPST-------------------RIQQQLGQL  206 (236)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHH-----TTTCCSCCCCTTCCCGGGGCTTSSCH-------------------HHHHHHHTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHH-----HcCCCCCcccCCCCCHHHHHHccCch-------------------HHHHHHHHc
Confidence            999999999999999999999     56778999999999999999999865                   334444444


Q ss_pred             cccc---ccccCCCCChhhhhh
Q 048145          377 HYAM---HRDKNKRMTANDLFD  395 (578)
Q Consensus       377 ~~~~---~~n~~~g~t~~~l~~  395 (578)
                      +...   ..+. +|.|+.|...
T Consensus       207 ga~~~~~~~~~-~~~~~~~~~~  227 (236)
T 1ikn_D          207 TLENLQMLPES-EDEESYDTES  227 (236)
T ss_dssp             SCGGGSSCCCC-CTTTCCCCC-
T ss_pred             chhhhhcCCcc-chHHHHhhhc
Confidence            4322   3344 8888877543

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.97  E-value=4.9e-31  Score=260.24  Aligned_cols=209  Identities=20%  Similarity=0.239  Sum_probs=180.6

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN   80 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g   80 (578)
                      |+..|+.+.+..+++.  +. ..+..  +|.||||+|+..|+.++|++|+++ +++     ++.+|..|+||||+|+..|
T Consensus        38 A~~~g~~~~v~~Ll~~--g~-~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~-ga~-----~~~~d~~g~t~L~~A~~~g  106 (285)
T 3kea_A           38 AIADNNVRLVCTLLNA--GA-LKNLL--ENEFPLHQAATLEDTKIVKILLFS-GLD-----DSQFDDKGNTALYYAVDSG  106 (285)
T ss_dssp             HHHTTCHHHHHHHHHT--TG-GGSCC--TTCCHHHHHTTSSSCHHHHHHHHT-TCC-----TTCCCTTSCCHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHhC--CC-CCCCC--CCCCHHHHHHHcCCHHHHHHHHHC-CCC-----CCCcCCCCCcHHHHHHHcC
Confidence            5788999977777776  33 33333  599999999999999999999999 999     9999999999999999999


Q ss_pred             CHHHHHHHHhhcCCCCCCCCCCcccCCCCC-CCHHHHHHHcCcHHHHHHHHHh---cccc-CCccHHHHHHHHHHHHHhc
Q 048145           81 NVDVAKTLVEFSKQSNDADKNPLVVENKLG-ETPLYRAASVGKIEALRYFAEQ---VNQT-AAISILSSKMYIAIWRQVI  155 (578)
Q Consensus        81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g-~TpLh~A~~~g~~~iv~~Ll~~---~~~~-~g~t~Lh~A~~~~~~~~~~  155 (578)
                      +.+++++|+++|+        +++.++..| .||||+|+..|+.+++++|++.   ..+. .|.||||+|+        .
T Consensus       107 ~~~~v~~Ll~~ga--------~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~--------~  170 (285)
T 3kea_A          107 NMQTVKLFVKKNW--------RLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITI--------K  170 (285)
T ss_dssp             CHHHHHHHHHHCG--------GGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHH--------H
T ss_pred             CHHHHHHHHhcCC--------CCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHH--------H
Confidence            9999999999999        899999999 8999999999999999999998   3333 8999999999        7


Q ss_pred             cCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCc
Q 048145          156 QGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCT  235 (578)
Q Consensus       156 ~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  235 (578)
                      .|+                .+++++|+++|++++..                                            
T Consensus       171 ~g~----------------~~~v~~Ll~~gad~n~~--------------------------------------------  190 (285)
T 3kea_A          171 NGH----------------VDMMILLLDYMTSTNTN--------------------------------------------  190 (285)
T ss_dssp             TTC----------------HHHHHHHHHHHHHTCTT--------------------------------------------
T ss_pred             cCh----------------HHHHHHHHHcCCCCCcc--------------------------------------------
Confidence            788                89999999999876543                                            


Q ss_pred             cccccccCcccccccccccccccccccchhH-HHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHH
Q 048145          236 NKAHVDQYPQAVDQENDTTKDMTSSMRTMRI-LLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFE  314 (578)
Q Consensus       236 ~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~p-Lh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~  314 (578)
                                       |..|.|       | ||+|+..|+.+++++|++ .|++++..|.       .|+..|+.++++
T Consensus       191 -----------------~~~g~t-------~~L~~A~~~~~~~~v~~Ll~-~gad~~~~~~-------~a~~~~~~~iv~  238 (285)
T 3kea_A          191 -----------------NSLLFI-------PDIKLAIDNKDIEMLQALFK-YDINIYSANL-------ENVLLDDAEIAK  238 (285)
T ss_dssp             -----------------CCCBCC-------TTHHHHHHHTCHHHHHHHTT-SCBCSTTTTG-------GGGTTTCHHHHH
T ss_pred             -----------------cCCCCC-------hHHHHHHHcCCHHHHHHHHH-cCCCCCCCCh-------hhhhcCCHHHHH
Confidence                             235555       7 999999999999999998 8999999883       567799999999


Q ss_pred             HHHHhhchhhhhhhhcccC
Q 048145          315 IIKEKMQLSLAEWALKIDN  333 (578)
Q Consensus       315 ~Ll~~~~~~~~~~~~~~d~  333 (578)
                      +|+     +.|.+++..+.
T Consensus       239 ~Ll-----~~g~~~~~~~~  252 (285)
T 3kea_A          239 MII-----EKHVEYKSDSY  252 (285)
T ss_dssp             HHH-----HHHHHHTTCTT
T ss_pred             HHH-----HcCCCCCCccc
Confidence            999     45556665443

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.97  E-value=1.6e-30  Score=248.39  Aligned_cols=188  Identities=20%  Similarity=0.170  Sum_probs=159.9

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhh-cCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh----------cccc
Q 048145           68 NGNTAVHALATINNVDVAKTLVEF-SKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ----------VNQT  136 (578)
Q Consensus        68 ~G~TpLh~Aa~~g~~~iv~~Ll~~-g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~----------~~~~  136 (578)
                      .|+||||+|++.|+.++++.|++. |.        +++.+|..|.||||+|+.+|+.+++++|++.          ..+.
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~--------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~   73 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGC--------EVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELY   73 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCS--------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCC--------CcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCC
Confidence            589999999999999999999998 77        8999999999999999999999999999998          1245


Q ss_pred             CCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCcccccc
Q 048145          137 AAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVV  216 (578)
Q Consensus       137 ~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  216 (578)
                      .|.||||+|+        ..|+                .+++++|+++|++++..+...     .++             
T Consensus        74 ~g~t~L~~A~--------~~~~----------------~~~v~~Ll~~g~~~~~~~~~~-----~~~-------------  111 (232)
T 2rfa_A           74 EGQTALHIAV--------INQN----------------VNLVRALLARGASVSARATGS-----VFH-------------  111 (232)
T ss_dssp             TTCCHHHHHH--------HTTC----------------HHHHHHHHHTTCCTTCCCCSG-----GGS-------------
T ss_pred             CCcCHHHHHH--------HcCC----------------HHHHHHHHhCCCCCCcccCCc-----cee-------------
Confidence            8999999999        7788                899999999999887652210     000             


Q ss_pred             ccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccC
Q 048145          217 DVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEK  296 (578)
Q Consensus       217 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~  296 (578)
                                                    ...+..|..|.|       |||+|+..|+.+++++|++ .|++++.+|.+
T Consensus       112 ------------------------------~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~  153 (232)
T 2rfa_A          112 ------------------------------YRPHNLIYYGEH-------PLSFAACVGSEEIVRLLIE-HGADIRAQDSL  153 (232)
T ss_dssp             ------------------------------CCTTCSCCCCSS-------HHHHHHHHTCHHHHHHHHH-TTCCTTCCCTT
T ss_pred             ------------------------------ecccccccCCCC-------HHHHHHHcCCHHHHHHHHH-CCCCCCCCCCC
Confidence                                          011222335555       9999999999999999998 89999999999


Q ss_pred             CChHHHHHHHhCcHHHH----HHHHHhhchhhhhhh------hcccCCCCchhhHHHhcccc
Q 048145          297 GQNILHVAIMYRQLEIF----EIIKEKMQLSLAEWA------LKIDNEGYTILHQVADMKYY  348 (578)
Q Consensus       297 G~t~Lh~A~~~g~~~iv----~~Ll~~~~~~~~~~~------~~~d~~G~T~LhlA~~~~~~  348 (578)
                      |+||||+|+.+|+.+++    ++|+     +.|++.      +.+|.+|+||||+|+..|+.
T Consensus       154 g~t~L~~A~~~~~~~~~~~i~~~Ll-----~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~  210 (232)
T 2rfa_A          154 GNTVLHILILQPNKTFACQMYNLLL-----SYDGGDHLKSLELVPNNQGLTPFKLAGVEGNI  210 (232)
T ss_dssp             SCCHHHHHHTCSCHHHHHHHHHHHH-----HTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCH
T ss_pred             CCCHHHHHHHcCChHHHHHHHHHHH-----hcCCchhhhhhhccCCCCCCCHHHHHHHcCCH
Confidence            99999999999999988    8887     445555      68999999999999999975

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=4.1e-31  Score=256.59  Aligned_cols=190  Identities=18%  Similarity=0.149  Sum_probs=160.4

Q ss_pred             CCCcHHHHHHhcCChH----HHHHHHccCCCchhhhhhhc----cCCCCChHHHHHHHc---CCHHHHHHHHhhcCCCCC
Q 048145           29 NGECAIHVAAAMEDPE----LIKKFLGRLPVEKRLEALMQ----TDDNGNTAVHALATI---NNVDVAKTLVEFSKQSND   97 (578)
Q Consensus        29 ~g~T~Lh~Aa~~g~~~----~v~~Ll~~~~~~~~~~~l~~----~d~~G~TpLh~Aa~~---g~~~iv~~Ll~~g~~~~~   97 (578)
                      .|+||||.|+..|+.+    ++++|++. +.+     ++.    +|.+|+||||+|+..   |+.+++++|++.|++.+.
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~-g~~-----i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~   74 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWN-SKY-----LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGN   74 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHH-TCC-----TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTC
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHc-CCC-----cccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccc
Confidence            4889999999999997    55666667 888     888    899999999999999   999999999999983221


Q ss_pred             CCC---CCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccC-------------CccHHHHHHHHHHHHHhcc
Q 048145           98 ADK---NPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTA-------------AISILSSKMYIAIWRQVIQ  156 (578)
Q Consensus        98 ~~~---~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~-------------g~t~Lh~A~~~~~~~~~~~  156 (578)
                      .+.   .....+|..|.||||+|+..|+.+++++|++.     ..+..             |.||||+|+        ..
T Consensus        75 ~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~--------~~  146 (256)
T 2etb_A           75 PKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAA--------CT  146 (256)
T ss_dssp             SSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHH--------HT
T ss_pred             hhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHH--------Hc
Confidence            110   00113457899999999999999999999998     33443             999999999        77


Q ss_pred             CchHHHHHHHhhhhhHHHHHHHHHHHh---ccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcC
Q 048145          157 GCPAIKKIWEKKQIHKKAVALVKMLVE---KRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKG  233 (578)
Q Consensus       157 G~~~~~~~~~~~~~~~~~~~~v~~Ll~---~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  233 (578)
                      |+                .+++++|++   +|++++..                                          
T Consensus       147 ~~----------------~~~v~~Ll~~~~~ga~~n~~------------------------------------------  168 (256)
T 2etb_A          147 KQ----------------WDVVTYLLENPHQPASLEAT------------------------------------------  168 (256)
T ss_dssp             TC----------------HHHHHHHHHCSSCCCCTTCC------------------------------------------
T ss_pred             CC----------------HHHHHHHHhccccCCCcCcc------------------------------------------
Confidence            88                899999999   77776543                                          


Q ss_pred             CccccccccCcccccccccccccccccccchhHHHHHHh--cCHHH-------HHHHHHHHCCCcc-------cccccCC
Q 048145          234 CTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVS--NGIIE-------ILEEIRHKYPQTL-------DNVNEKG  297 (578)
Q Consensus       234 ~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~--~G~~~-------iv~~Ll~~~~~~i-------~~~d~~G  297 (578)
                                         |..|+|       |||+|+.  .|+.+       ++++|++ .|+++       +.+|.+|
T Consensus       169 -------------------d~~g~T-------pLh~A~~~~~~~~~~~~~~~~iv~~Ll~-~ga~~~~~~~~~~~~d~~g  221 (256)
T 2etb_A          169 -------------------DSLGNT-------VLHALVMIADNSPENSALVIHMYDGLLQ-MGARLCPTVQLEEISNHQG  221 (256)
T ss_dssp             -------------------CTTSCC-------HHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHHHHSTTCCGGGCCCTTS
T ss_pred             -------------------CCCCCC-------HHHHHHHcccCCchhhHHHHHHHHHHHH-cCCCcccccccccccCCCC
Confidence                               335666       9999999  88888       9999998 78888       9999999


Q ss_pred             ChHHHHHHHhCcHHHHHHHH
Q 048145          298 QNILHVAIMYRQLEIFEIIK  317 (578)
Q Consensus       298 ~t~Lh~A~~~g~~~iv~~Ll  317 (578)
                      +||||+|+++|+.+++++|+
T Consensus       222 ~tpL~~A~~~g~~~~v~~Ll  241 (256)
T 2etb_A          222 LTPLKLAAKEGKIEIFRHIL  241 (256)
T ss_dssp             CCHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=2.2e-30  Score=233.84  Aligned_cols=158  Identities=22%  Similarity=0.306  Sum_probs=134.6

Q ss_pred             cHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCC
Q 048145           32 CAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGE  111 (578)
Q Consensus        32 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~  111 (578)
                      ++|+.||+.|+.++|+.|++. |++     ++.+|.+|+||||+|+..|+.++++.|+++|+        +++.+|..|.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~-Gad-----vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~ga--------d~~~~d~~g~   71 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIEN-GAD-----VNASDSDGRTPLHHAAENGHKEVVKLLISKGA--------DVNAKDSDGR   71 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT-TCC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC--------CTTCCCTTSC
T ss_pred             HHHHHHHHcCCHHHHHHHHHC-CCC-----CCCcCCCCCCHHHHHHHcCCHHHHHHHHhccc--------chhhhccCCC
Confidence            579999999999999999998 999     99999999999999999999999999999999        8999999999


Q ss_pred             CHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhcccccccc
Q 048145          112 TPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCAT  191 (578)
Q Consensus       112 TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~  191 (578)
                      ||||+|+.+|+.+++                                                    ++|+++|++++..
T Consensus        72 TpLh~A~~~g~~~~v----------------------------------------------------~~Ll~~gadvn~~   99 (169)
T 4gpm_A           72 TPLHHAAENGHKEVV----------------------------------------------------KLLISKGADVNAK   99 (169)
T ss_dssp             CHHHHHHHTTCHHHH----------------------------------------------------HHHHHTTCCTTCC
T ss_pred             CHHHHHHHcCCHHHH----------------------------------------------------HHHHHCcCCCCCC
Confidence            999999998875554                                                    4455555554332


Q ss_pred             ccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHH
Q 048145          192 HEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAV  271 (578)
Q Consensus       192 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa  271 (578)
                                                                                   |.+|+|       |||+|+
T Consensus       100 -------------------------------------------------------------d~~G~T-------pLh~A~  111 (169)
T 4gpm_A          100 -------------------------------------------------------------DSDGRT-------PLHHAA  111 (169)
T ss_dssp             -------------------------------------------------------------CTTSCC-------HHHHHH
T ss_pred             -------------------------------------------------------------CCCCCC-------HHHHHH
Confidence                                                                         335666       999999


Q ss_pred             hcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhh
Q 048145          272 SNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWAL  329 (578)
Q Consensus       272 ~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~  329 (578)
                      +.|+.+++++|++ .|++++.+|.+|+||||+|+++|+.+++++|+     +.|++++
T Consensus       112 ~~g~~~~v~~Ll~-~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll-----~~GA~ie  163 (169)
T 4gpm_A          112 ENGHKEVVKLLIS-KGADVNTSDSDGRTPLDLAREHGNEEVVKLLE-----KQGGWLE  163 (169)
T ss_dssp             HTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-----TC-----
T ss_pred             HcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHHH-----HCCCCcC
Confidence            9999999999998 89999999999999999999999999999999     4565554

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.96  E-value=3.6e-29  Score=233.30  Aligned_cols=179  Identities=17%  Similarity=0.146  Sum_probs=159.2

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCcc
Q 048145           66 DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAIS  140 (578)
Q Consensus        66 d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t  140 (578)
                      +..+.||||.|+..|+.++++.|++.++       .+++.+|..|.||||+|+.+|+.+++++|++.     ..+..|.|
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~-------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t   74 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTT-------YQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDS   74 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTT-------CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCC-------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence            3578999999999999999999999987       68999999999999999999999999999998     56788999


Q ss_pred             HHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhcc-ccccccccCCCCCCchhhcccCCCCccccccccc
Q 048145          141 ILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKR-IDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVS  219 (578)
Q Consensus       141 ~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  219 (578)
                      |||+|+        ..|+                .+++++|++++ .+++..                            
T Consensus        75 ~l~~A~--------~~~~----------------~~~~~~Ll~~~~~~~~~~----------------------------  102 (201)
T 3hra_A           75 PYLYAG--------AQGR----------------TEILAYMLKHATPDLNKH----------------------------  102 (201)
T ss_dssp             HHHHHH--------HTTC----------------HHHHHHHHHHSCCCTTCC----------------------------
T ss_pred             HHHHHH--------HcCC----------------HHHHHHHHhccCcccccc----------------------------
Confidence            999999        7788                89999999643 333222                            


Q ss_pred             hhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCCh
Q 048145          220 AGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQN  299 (578)
Q Consensus       220 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t  299 (578)
                                                       |..|.|       |||+|+..|+.+++++|++..+.+++.+|..|+|
T Consensus       103 ---------------------------------~~~g~t-------~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t  142 (201)
T 3hra_A          103 ---------------------------------NRYGGN-------ALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYT  142 (201)
T ss_dssp             ---------------------------------CTTSCC-------SHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCC
T ss_pred             ---------------------------------cCCCCc-------HHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCC
Confidence                                             235556       9999999999999999999766999999999999


Q ss_pred             HHHHHHHhCc-----HHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcccc
Q 048145          300 ILHVAIMYRQ-----LEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYY  348 (578)
Q Consensus       300 ~Lh~A~~~g~-----~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~  348 (578)
                      |||+|+..++     .+++++|+     +.|++++.+|.+|+||||+|+..++.
T Consensus       143 ~L~~A~~~~~~~~~~~~~v~~Ll-----~~ga~~~~~~~~g~t~l~~A~~~~~~  191 (201)
T 3hra_A          143 ALIEAVGLREGNQLYQDIVKLLM-----ENGADQSIKDNSGRTAMDYANQKGYT  191 (201)
T ss_dssp             HHHHHHHSSCCSHHHHHHHHHHH-----HTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHhccchhhHHHHHHHHH-----HCCCCCCccCCCCCCHHHHHHHcCCH
Confidence            9999999998     99999999     56778999999999999999999865

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.96  E-value=6.8e-30  Score=250.49  Aligned_cols=200  Identities=16%  Similarity=0.164  Sum_probs=158.4

Q ss_pred             hhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcc----cCCCCCCCHHHHHHHc---CcHHHHHHHHHhc-
Q 048145           62 LMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLV----VENKLGETPLYRAASV---GKIEALRYFAEQV-  133 (578)
Q Consensus        62 l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~----~~n~~g~TpLh~A~~~---g~~~iv~~Ll~~~-  133 (578)
                      .+..|..|+||||+||+.|+.++|+.|++.+.+..    .+++    ..|..|.||||+|+.+   |+.+++++|++.. 
T Consensus         6 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~----~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga   81 (273)
T 2pnn_A            6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSK----KRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVAR   81 (273)
T ss_dssp             -----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSC----CCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHH
T ss_pred             CCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcc----cccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhc
Confidence            56789999999999999999999999998653111    1332    4588999999999987   9999999999971 


Q ss_pred             ---------------cccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCC
Q 048145          134 ---------------NQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPG  198 (578)
Q Consensus       134 ---------------~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~  198 (578)
                                     .|..|.||||+|+        ..|+                .+++++|+++|++++..+....  
T Consensus        82 ~~~~~~~~i~~~~~~~d~~g~tpL~~A~--------~~g~----------------~~~v~~Ll~~ga~~~~~~~~~~--  135 (273)
T 2pnn_A           82 KTDSLKQFVNASYTDSYYKGQTALHIAI--------ERRN----------------MTLVTLLVENGADVQAAANGDF--  135 (273)
T ss_dssp             HTTCHHHHHTCCCCSTTTTTCCHHHHHH--------HTTC----------------HHHHHHHHHTTCCTTCCBCSGG--
T ss_pred             cccchhHHhhcccccccCCCCCHHHHHH--------HcCC----------------HHHHHHHHHCCCCcCccccccc--
Confidence                           3568999999999        7788                9999999999998876632110  


Q ss_pred             CchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHH
Q 048145          199 VTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEI  278 (578)
Q Consensus       199 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~i  278 (578)
                         .                                          ...+....+..|.|       |||+|+..|+.++
T Consensus       136 ---~------------------------------------------~~~~~~~~~~~g~t-------pL~~A~~~g~~~~  163 (273)
T 2pnn_A          136 ---F------------------------------------------KKTKGRPGFYFGEL-------PLSLAACTNQLAI  163 (273)
T ss_dssp             ---G------------------------------------------SSCSSSCCCCSCBS-------HHHHHHHTTCHHH
T ss_pred             ---c------------------------------------------ccccccccccCCCC-------HHHHHHHcCCHHH
Confidence               0                                          00000111224444       9999999999999


Q ss_pred             HHHHHHH--CCCcccccccCCChHHHHHHHhCc---------HHHHHHHHHhhchhhhhhhh-------cccCCCCchhh
Q 048145          279 LEEIRHK--YPQTLDNVNEKGQNILHVAIMYRQ---------LEIFEIIKEKMQLSLAEWAL-------KIDNEGYTILH  340 (578)
Q Consensus       279 v~~Ll~~--~~~~i~~~d~~G~t~Lh~A~~~g~---------~~iv~~Ll~~~~~~~~~~~~-------~~d~~G~T~Lh  340 (578)
                      +++|++.  .|++++.+|.+|+||||+|++.|+         .+++++|+     +.|++++       .+|.+|+||||
T Consensus       164 v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll-----~~ga~~n~~~~~~~~~d~~g~TpL~  238 (273)
T 2pnn_A          164 VKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEIL-----ILGAKLHPTLKLEEITNRKGLTPLA  238 (273)
T ss_dssp             HHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHH-----HHHHHHCTTCCGGGCCCTTSCCHHH
T ss_pred             HHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHH-----HhhhhcccccccccccCCCCCCHHH
Confidence            9999985  789999999999999999999998         79999999     5677786       59999999999


Q ss_pred             HHHhcccc
Q 048145          341 QVADMKYY  348 (578)
Q Consensus       341 lA~~~~~~  348 (578)
                      +|+..|+.
T Consensus       239 ~A~~~g~~  246 (273)
T 2pnn_A          239 LAASSGKI  246 (273)
T ss_dssp             HHHHTTCH
T ss_pred             HHHHhChH
Confidence            99999975

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.96  E-value=1.8e-29  Score=244.96  Aligned_cols=189  Identities=17%  Similarity=0.116  Sum_probs=158.4

Q ss_pred             CCChHHHHHHHcCCHH----HHHHHHhhcCCCCCCCCCCccc----CCCCCCCHHHHHHHc---CcHHHHHHHHHh---c
Q 048145           68 NGNTAVHALATINNVD----VAKTLVEFSKQSNDADKNPLVV----ENKLGETPLYRAASV---GKIEALRYFAEQ---V  133 (578)
Q Consensus        68 ~G~TpLh~Aa~~g~~~----iv~~Ll~~g~~~~~~~~~~~~~----~n~~g~TpLh~A~~~---g~~~iv~~Ll~~---~  133 (578)
                      .|+||||.||+.|+.+    ++++|++.|.        +++.    +|..|.||||+|+.+   |+.+++++|++.   .
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~--------~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~   72 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSK--------YLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDS   72 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTC--------CTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHT
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCC--------CcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcc
Confidence            4899999999999997    6677778898        7887    899999999999999   999999999998   1


Q ss_pred             -------------cccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCc
Q 048145          134 -------------NQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVT  200 (578)
Q Consensus       134 -------------~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~  200 (578)
                                   .|..|.||||+|+        ..|+                .+++++|+++|++++..+....   .
T Consensus        73 ~~~~~~~~~~~~~~d~~g~t~L~~A~--------~~g~----------------~~~v~~Ll~~ga~~~~~~~~~~---~  125 (256)
T 2etb_A           73 GNPKPLVNAQCTDEFYQGHSALHIAI--------EKRS----------------LQCVKLLVENGADVHLRACGRF---F  125 (256)
T ss_dssp             TCSSCGGGCCCCSTTTTTCCHHHHHH--------HTTC----------------HHHHHHHHHTTCCTTCCCCSGG---G
T ss_pred             cchhhhcccccccccccCCCHHHHHH--------HcCC----------------HHHHHHHHHcCCCCCccccccc---c
Confidence                         1257999999999        7788                9999999999998876522100   0


Q ss_pred             hhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHH
Q 048145          201 EISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILE  280 (578)
Q Consensus       201 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~  280 (578)
                                                                   ..+....|..|.|       |||+|+..|+.++++
T Consensus       126 ---------------------------------------------~~~~~~~~~~g~t-------pL~~A~~~~~~~~v~  153 (256)
T 2etb_A          126 ---------------------------------------------QKHQGTCFYFGEL-------PLSLAACTKQWDVVT  153 (256)
T ss_dssp             ---------------------------------------------SCCSSSCCCSCSS-------HHHHHHHTTCHHHHH
T ss_pred             ---------------------------------------------cccccccccCCCC-------HHHHHHHcCCHHHHH
Confidence                                                         0000111123555       999999999999999


Q ss_pred             HHHHH--CCCcccccccCCChHHHHHHH--hCcHH-------HHHHHHHhhchhhhhhh-------hcccCCCCchhhHH
Q 048145          281 EIRHK--YPQTLDNVNEKGQNILHVAIM--YRQLE-------IFEIIKEKMQLSLAEWA-------LKIDNEGYTILHQV  342 (578)
Q Consensus       281 ~Ll~~--~~~~i~~~d~~G~t~Lh~A~~--~g~~~-------iv~~Ll~~~~~~~~~~~-------~~~d~~G~T~LhlA  342 (578)
                      +|++.  .|++++.+|.+|+||||+|+.  +++.+       ++++|+     +.|+++       +.+|.+|+||||+|
T Consensus       154 ~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll-----~~ga~~~~~~~~~~~~d~~g~tpL~~A  228 (256)
T 2etb_A          154 YLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLL-----QMGARLCPTVQLEEISNHQGLTPLKLA  228 (256)
T ss_dssp             HHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHH-----HHHHHHSTTCCGGGCCCTTSCCHHHHH
T ss_pred             HHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHH-----HcCCCcccccccccccCCCCCCHHHHH
Confidence            99986  789999999999999999999  78888       999999     667788       99999999999999


Q ss_pred             Hhcccc
Q 048145          343 ADMKYY  348 (578)
Q Consensus       343 ~~~~~~  348 (578)
                      +..|+.
T Consensus       229 ~~~g~~  234 (256)
T 2etb_A          229 AKEGKI  234 (256)
T ss_dssp             HHTTCH
T ss_pred             HHhCCH
Confidence            999975

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=8.2e-30  Score=247.94  Aligned_cols=192  Identities=16%  Similarity=0.147  Sum_probs=160.5

Q ss_pred             CCCCCcHHHHHHhcCChHHHHHHHc----cCCCchhhhhhhccC----CCCChHHHHHH---HcCCHHHHHHHHhhcCCC
Q 048145           27 TFNGECAIHVAAAMEDPELIKKFLG----RLPVEKRLEALMQTD----DNGNTAVHALA---TINNVDVAKTLVEFSKQS   95 (578)
Q Consensus        27 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~----~~~~~~~~~~l~~~d----~~G~TpLh~Aa---~~g~~~iv~~Ll~~g~~~   95 (578)
                      +..|+|+||.|++.|+.+.|+.|++    . +.+     ++.++    ..|+||||+|+   +.|+.+++++|++.|++.
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~-~~~-----~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~   75 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTH-KKR-----LTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKT   75 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHH-TCC-----TTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHT
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhc-CCC-----cchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccc
Confidence            5678999999999999996666655    6 777     77665    77999999999   779999999999998622


Q ss_pred             CCCC---CCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccc--------------cCCccHHHHHHHHHHHHH
Q 048145           96 NDAD---KNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQ--------------TAAISILSSKMYIAIWRQ  153 (578)
Q Consensus        96 ~~~~---~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~--------------~~g~t~Lh~A~~~~~~~~  153 (578)
                      ....   ...++..|..|.||||+|+..|+.+++++|++.     ..+              ..|.||||+|+       
T Consensus        76 ~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~-------  148 (260)
T 3jxi_A           76 GNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAA-------  148 (260)
T ss_dssp             TCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHH-------
T ss_pred             cchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHH-------
Confidence            1100   013556677899999999999999999999998     334              47999999999       


Q ss_pred             hccCchHHHHHHHhhhhhHHHHHHHHHHHh---ccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHH
Q 048145          154 VIQGCPAIKKIWEKKQIHKKAVALVKMLVE---KRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQV  230 (578)
Q Consensus       154 ~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~---~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~  230 (578)
                       ..|+                .+++++|++   +|++++..                                       
T Consensus       149 -~~g~----------------~~~v~~Ll~~~~~ga~~~~~---------------------------------------  172 (260)
T 3jxi_A          149 -CTNQ----------------PHIVHYLTENGHKQADLRRQ---------------------------------------  172 (260)
T ss_dssp             -HTTC----------------HHHHHHHHHCSSCCCCTTCC---------------------------------------
T ss_pred             -HcCC----------------HHHHHHHHhccccCCCCccc---------------------------------------
Confidence             7788                899999999   77766543                                       


Q ss_pred             hcCCccccccccCcccccccccccccccccccchhHHHHHHhcCH---------HHHHHHHHHHCCCcc-------cccc
Q 048145          231 KKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGI---------IEILEEIRHKYPQTL-------DNVN  294 (578)
Q Consensus       231 ~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~---------~~iv~~Ll~~~~~~i-------~~~d  294 (578)
                                            |..|+|       |||+|+..|+         .+++++|++ .|+++       +..|
T Consensus       173 ----------------------d~~g~T-------pLh~A~~~~~~~~~~~~~~~~~v~~Ll~-~ga~~~~~~~~~~~~d  222 (260)
T 3jxi_A          173 ----------------------DSRGNT-------VLHALVAIADNTRENTKFVTKMYDLLLI-KCAKLFPDTNLEALLN  222 (260)
T ss_dssp             ----------------------CTTSCC-------HHHHHHHHCCSSHHHHHHHHHHHHHHHH-HHHHHCTTCCGGGCCC
T ss_pred             ----------------------CCCCCc-------HHHHHHHhccCchhHHHHHHHHHHHHHH-hCcccccccchhhccc
Confidence                                  335666       9999998887         799999998 77888       7899


Q ss_pred             cCCChHHHHHHHhCcHHHHHHHH
Q 048145          295 EKGQNILHVAIMYRQLEIFEIIK  317 (578)
Q Consensus       295 ~~G~t~Lh~A~~~g~~~iv~~Ll  317 (578)
                      .+|+||||+|+++|+.+++++|+
T Consensus       223 ~~g~tpL~~A~~~g~~~~v~~Ll  245 (260)
T 3jxi_A          223 NDGLSPLMMAAKTGKIGIFQHII  245 (260)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=1.4e-28  Score=223.41  Aligned_cols=170  Identities=16%  Similarity=0.176  Sum_probs=140.1

Q ss_pred             CCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCC
Q 048145           30 GECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKL  109 (578)
Q Consensus        30 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~  109 (578)
                      +.||||.|+..|+.++++.|++..+..     ++.+|..|+||||+|+..|+.+++++|+++|+        +++.+|..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--------~~~~~~~~   68 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNL-----VNKPDERGFTPLIWASAFGEIETVRFLLEWGA--------DPHILAKE   68 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGG-----GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC--------CTTCCCTT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCccc-----ccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC--------Cchhhccc
Confidence            468999999999999999999985555     78889999999999999999999999999999        88999999


Q ss_pred             CCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhcccccc
Q 048145          110 GETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDC  189 (578)
Q Consensus       110 g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~  189 (578)
                      |.||||+|+.+|+.+++++|                                                    +++|++++
T Consensus        69 g~t~L~~A~~~~~~~~v~~L----------------------------------------------------l~~g~~~~   96 (172)
T 3v30_A           69 RESALSLASTGGYTDIVGLL----------------------------------------------------LERDVDIN   96 (172)
T ss_dssp             CCCHHHHHHHTTCHHHHHHH----------------------------------------------------HTTTCCTT
T ss_pred             CCCHHHHHHHCCCHHHHHHH----------------------------------------------------HHcCCCCC
Confidence            99999999998886555555                                                    44444433


Q ss_pred             ccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHH
Q 048145          190 ATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLF  269 (578)
Q Consensus       190 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~  269 (578)
                      ..                                                             |..|.|       |||+
T Consensus        97 ~~-------------------------------------------------------------~~~g~t-------~L~~  108 (172)
T 3v30_A           97 IY-------------------------------------------------------------DWNGGT-------PLLY  108 (172)
T ss_dssp             CC-------------------------------------------------------------CTTSCC-------HHHH
T ss_pred             CC-------------------------------------------------------------CCCCCC-------HHHH
Confidence            22                                                             235566       9999


Q ss_pred             HHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCch
Q 048145          270 AVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTI  338 (578)
Q Consensus       270 Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~  338 (578)
                      |+..|+.+++++|++ .|++++..|.+|+||||+|+.+|+.+++++|+     +.++++..++..|.||
T Consensus       109 A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~-----~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          109 AVRGNHVKCVEALLA-RGADLTTEADSGYTPMDLAVALGYRKVQQVIE-----NHILKLFQSNLVPADP  171 (172)
T ss_dssp             HHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-----HHHHHHSCC-------
T ss_pred             HHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHhCcHHHHHHHH-----HHHHHHhcccCCCCCC
Confidence            999999999999998 89999999999999999999999999999999     5677789999999887

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=1.5e-29  Score=248.34  Aligned_cols=189  Identities=21%  Similarity=0.205  Sum_probs=165.1

Q ss_pred             CCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCC
Q 048145           29 NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENK  108 (578)
Q Consensus        29 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~  108 (578)
                      ...+++|.|+..|+.+.++.+++. ..   ...++.+|.+|+||||+||..|+.+++++|++.|+       .+++..|.
T Consensus        75 ~~~~~l~~a~~~~~~~~~~~l~~~-~~---~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~-------~~~~~~~~  143 (276)
T 4hbd_A           75 ACRSDAHPELVRRHLVTFRAMSAR-LL---DYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGV-------CKVDKQNR  143 (276)
T ss_dssp             HHSTTCCHHHHHHHHHHHHHHCHH-HH---HHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSC-------CCTTCCCT
T ss_pred             HhccCCCHHHHHHHHHHHHHHHHH-HH---hhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCC-------CcCCCCCC
Confidence            356888999999999999999876 22   13388999999999999999999999999999998       68999999


Q ss_pred             CCCCHHHHHH-----HcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHH
Q 048145          109 LGETPLYRAA-----SVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALV  178 (578)
Q Consensus       109 ~g~TpLh~A~-----~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v  178 (578)
                      .|.||||+|+     ..++.+++++|++.     ..+..|.||||+|+        ..|+                .+++
T Consensus       144 ~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~--------~~g~----------------~~~v  199 (276)
T 4hbd_A          144 AGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAV--------SHGR----------------VDVV  199 (276)
T ss_dssp             TSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHH--------HTTC----------------HHHH
T ss_pred             CCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHH--------HcCC----------------HHHH
Confidence            9999999999     67889999999988     45677999999999        7777                8999


Q ss_pred             HHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCccccccccccccccc
Q 048145          179 KMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMT  258 (578)
Q Consensus       179 ~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t  258 (578)
                      ++|+++|++++..                                                             |..|+|
T Consensus       200 ~~Ll~~gad~n~~-------------------------------------------------------------d~~G~T  218 (276)
T 4hbd_A          200 KALLACEADVNVQ-------------------------------------------------------------DDDGST  218 (276)
T ss_dssp             HHHHHTTCCTTCC-------------------------------------------------------------CTTSCC
T ss_pred             HHHHhCCCCCCCC-------------------------------------------------------------CCCCCC
Confidence            9999998876543                                                             235666


Q ss_pred             ccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhh
Q 048145          259 SSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKM  320 (578)
Q Consensus       259 ~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~  320 (578)
                             |||+|+..|+.+++++|++..|++++.+|.+|+||||+|+++|+.+++++|+++.
T Consensus       219 -------pLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          219 -------ALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             -------HHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             -------HHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence                   9999999999999999998789999999999999999999999999999999443

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.96  E-value=1e-28  Score=223.00  Aligned_cols=150  Identities=19%  Similarity=0.243  Sum_probs=135.3

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN   80 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g   80 (578)
                      ||..|+.+.++.+++.   +..++.+|.+|.||||+|+..|+.++++.|++. +++     ++.+|.+|+||||+|++.|
T Consensus        11 Aa~~G~~~~v~~Ll~~---Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~-gad-----~~~~d~~g~TpLh~A~~~g   81 (169)
T 4gpm_A           11 AAENGNKDRVKDLIEN---GADVNASDSDGRTPLHHAAENGHKEVVKLLISK-GAD-----VNAKDSDGRTPLHHAAENG   81 (169)
T ss_dssp             HHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCC-----TTCCCTTSCCHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhc-ccc-----hhhhccCCCCHHHHHHHcC
Confidence            6889999988888887   455688899999999999999999999999999 999     9999999999999999999


Q ss_pred             CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhc
Q 048145           81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVI  155 (578)
Q Consensus        81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~  155 (578)
                      +.+++++|+++|+        +++.+|.+|+||||+|+.+|+.+++++|++.     ..|.+|.||||+|+        .
T Consensus        82 ~~~~v~~Ll~~ga--------dvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~--------~  145 (169)
T 4gpm_A           82 HKEVVKLLISKGA--------DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAR--------E  145 (169)
T ss_dssp             CHHHHHHHHHTTC--------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--------H
T ss_pred             CHHHHHHHHHCcC--------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH--------H
Confidence            9999999999999        8999999999999999999999999999998     67899999999999        7


Q ss_pred             cCchHHHHHHHhhhhhHHHHHHHHHHHhcccccccc
Q 048145          156 QGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCAT  191 (578)
Q Consensus       156 ~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~  191 (578)
                      .|+                .+++++|+++|++++..
T Consensus       146 ~g~----------------~~iv~~Ll~~GA~ie~~  165 (169)
T 4gpm_A          146 HGN----------------EEVVKLLEKQGGWLEHH  165 (169)
T ss_dssp             TTC----------------HHHHHHHHTC-------
T ss_pred             cCC----------------HHHHHHHHHCCCCcCCC
Confidence            788                89999999999988654

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=2.6e-28  Score=225.85  Aligned_cols=163  Identities=20%  Similarity=0.234  Sum_probs=137.1

Q ss_pred             hhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCC
Q 048145           20 EELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDAD   99 (578)
Q Consensus        20 ~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~   99 (578)
                      +...+..|..|.||||+|+..|+.++|++|++. +.+     ++.+|..|+||||+|+..|+.+++++|+++|+      
T Consensus        25 ~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------   92 (192)
T 2rfm_A           25 DFLRNYRDSYNRTPLMVACMLGMENAIDKLVEN-FDK-----LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGS------   92 (192)
T ss_dssp             HHHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHH-HCC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC------
T ss_pred             HHHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHh-ccc-----cccccccCccHHHHHHHcCCHHHHHHHHHCCC------
Confidence            345677888899999999999999999999988 777     88888889999999999999999999999888      


Q ss_pred             CCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHH
Q 048145          100 KNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVK  179 (578)
Q Consensus       100 ~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~  179 (578)
                        +++.+|..|.||||+|+..|+.+++++                                                   
T Consensus        93 --~~~~~~~~g~t~L~~A~~~~~~~~v~~---------------------------------------------------  119 (192)
T 2rfm_A           93 --NVNTKDFSGKTPLMWSIIFGYSEMSYF---------------------------------------------------  119 (192)
T ss_dssp             --CTTCCCTTSCCHHHHHHHHTCHHHHHH---------------------------------------------------
T ss_pred             --CCCCCCCCCCcHHHHHHHcCCHHHHHH---------------------------------------------------
Confidence              788888888888888888877555544                                                   


Q ss_pred             HHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccc
Q 048145          180 MLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTS  259 (578)
Q Consensus       180 ~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~  259 (578)
                       |+++|++++..                                                             |..|.| 
T Consensus       120 -Ll~~g~~~~~~-------------------------------------------------------------~~~g~t-  136 (192)
T 2rfm_A          120 -LLEHGANVNDR-------------------------------------------------------------NLEGET-  136 (192)
T ss_dssp             -HHHTTCCSSCC-------------------------------------------------------------CTTCCC-
T ss_pred             -HHHCCCCCCCC-------------------------------------------------------------CCCCCC-
Confidence             44555544322                                                             235566 


Q ss_pred             cccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHH
Q 048145          260 SMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIK  317 (578)
Q Consensus       260 ~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll  317 (578)
                            |||+|+..|+.+++++|++ .|++++.+|..|+||||+|+.+|+.+++++|+
T Consensus       137 ------~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  187 (192)
T 2rfm_A          137 ------PLIVASKYGRSEIVKKLLE-LGADISARDLTGLTAEASARIFGRQEVIKIFT  187 (192)
T ss_dssp             ------HHHHHHHHTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred             ------HHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHH
Confidence                  9999999999999999998 79999999999999999999999999999998

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.96  E-value=2e-29  Score=253.80  Aligned_cols=186  Identities=16%  Similarity=0.197  Sum_probs=149.4

Q ss_pred             hHHHHHHHhcCCchhhhcc-CCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCC---H
Q 048145            7 RQGFLRYFAQQTDEELLGY-RTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINN---V   82 (578)
Q Consensus         7 ~~~~~~ll~~~~~~~~~~~-~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~---~   82 (578)
                      .+.+.+++.+ . +..++. .|..|.||||+||..|+.++|++|+++ |++     ++.+|.+|+||||+|+..|+   .
T Consensus       109 ~~~~~~~l~~-~-g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~-Gad-----~n~~d~~g~TpLh~A~~~g~~~~~  180 (327)
T 1sw6_A          109 LQEVNDAFPN-T-QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH-GSN-----RLYGDNMGESCLVKAVKSVNNYDS  180 (327)
T ss_dssp             HHHHHHHCTT-S-CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHT-TCC-----TTBCCTTCCCHHHHHHHSSHHHHT
T ss_pred             HHHHHHHHHh-c-CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCC-----CCCcCCCCCCHHHHHHHhcccccH
Confidence            3445566655 2 334455 899999999999999999999999999 999     99999999999999999999   7


Q ss_pred             HHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHH----cCcHHHHHHHHHh-------------------------c
Q 048145           83 DVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAAS----VGKIEALRYFAEQ-------------------------V  133 (578)
Q Consensus        83 ~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~----~g~~~iv~~Ll~~-------------------------~  133 (578)
                      ++++.|++.+.       .+++.+|..|.||||+|+.    .|+.+++++|++.                         .
T Consensus       181 ~~~~~ll~~~~-------~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~  253 (327)
T 1sw6_A          181 GTFEALLDYLY-------PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND  253 (327)
T ss_dssp             TCHHHHHHHHG-------GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------
T ss_pred             HHHHHHHHhhh-------ccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCccc
Confidence            99999999985       3899999999999999999    8999999999875                         1


Q ss_pred             cccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccc
Q 048145          134 NQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEK  213 (578)
Q Consensus       134 ~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~  213 (578)
                      .+..|.||||.|+                            .  +++|++++                            
T Consensus       254 ~~~~g~t~L~~a~----------------------------~--~~~Ll~~~----------------------------  275 (327)
T 1sw6_A          254 KNGERKDSILENL----------------------------D--LKWIIANM----------------------------  275 (327)
T ss_dssp             ------CHHHHHC----------------------------S--HHHHHHHT----------------------------
T ss_pred             ccccCCChhHHHH----------------------------H--HHHHHHhC----------------------------
Confidence            3455666666655                            1  45555442                            


Q ss_pred             cccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCccccc
Q 048145          214 KVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNV  293 (578)
Q Consensus       214 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~  293 (578)
                                                         ++..|..|+|       |||+|++.|+.+++++|++ .|++++.+
T Consensus       276 -----------------------------------~n~~d~~G~T-------pLh~A~~~g~~~~v~~Ll~-~Gad~~~~  312 (327)
T 1sw6_A          276 -----------------------------------LNAQDSNGDT-------CLNIAARLGNISIVDALLD-YGADPFIA  312 (327)
T ss_dssp             -----------------------------------TTCCCTTSCC-------HHHHHHHHCCHHHHHHHHH-TTCCTTCC
T ss_pred             -----------------------------------CCCCCCCCCC-------HHHHHHHcCCHHHHHHHHH-cCCCCccc
Confidence                                               1223346666       9999999999999999998 89999999


Q ss_pred             ccCCChHHHHHHHhC
Q 048145          294 NEKGQNILHVAIMYR  308 (578)
Q Consensus       294 d~~G~t~Lh~A~~~g  308 (578)
                      |.+|+||||+|+++|
T Consensus       313 d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          313 NKSGLRPVDFGAGLE  327 (327)
T ss_dssp             CTTSCCGGGGTCC--
T ss_pred             CCCCCCHHHHHHhcC
Confidence            999999999998765

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=2.1e-28  Score=238.00  Aligned_cols=192  Identities=17%  Similarity=0.177  Sum_probs=155.6

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHh----hcCCCCCCCCCCcccCC----CCCCCHHHHHH---HcCcHHHHHHHHHh--
Q 048145           66 DDNGNTAVHALATINNVDVAKTLVE----FSKQSNDADKNPLVVEN----KLGETPLYRAA---SVGKIEALRYFAEQ--  132 (578)
Q Consensus        66 d~~G~TpLh~Aa~~g~~~iv~~Ll~----~g~~~~~~~~~~~~~~n----~~g~TpLh~A~---~~g~~~iv~~Ll~~--  132 (578)
                      |..|.||||.||+.|+.++++.|++    .|+        +++..+    ..|.||||+|+   +.|+.+++++|++.  
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~--------~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~   73 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKK--------RLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE   73 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTC--------CTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCC--------CcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence            5678999999999999996555554    888        666555    77999999999   77999999999996  


Q ss_pred             --------------ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCC
Q 048145          133 --------------VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPG  198 (578)
Q Consensus       133 --------------~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~  198 (578)
                                    ..|..|.||||+|+        ..|+                .+++++|+++|++++..+.+..  
T Consensus        74 ~~~~~~~~~~~~~~~~d~~g~t~L~~A~--------~~g~----------------~~~v~~Ll~~ga~~~~~~~~~~--  127 (260)
T 3jxi_A           74 KTGNMREFINSPFRDVYYRGQTALHIAI--------ERRC----------------KHYVELLVEKGADVHAQARGRF--  127 (260)
T ss_dssp             HTTCHHHHHTCCBCCSSEESBCHHHHHH--------HTTC----------------HHHHHHHHHTTCCTTCCCEECC--
T ss_pred             cccchHhhhcccccccccCCCCHHHHHH--------HcCC----------------HHHHHHHHhCCCCcCccccccc--
Confidence                          12338999999999        7788                9999999999998876632100  


Q ss_pred             CchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHH
Q 048145          199 VTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEI  278 (578)
Q Consensus       199 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~i  278 (578)
                                                                   ....+...       .+..|.||||+|+..|+.++
T Consensus       128 ---------------------------------------------~~~~~~~~-------~~~~g~tpL~~A~~~g~~~~  155 (260)
T 3jxi_A          128 ---------------------------------------------FQPKDEGG-------YFYFGELPLSLAACTNQPHI  155 (260)
T ss_dssp             ---------------------------------------------CSSSCCCC-------SCCSCSSHHHHHHHTTCHHH
T ss_pred             ---------------------------------------------cCcccccc-------cccCCCCHHHHHHHcCCHHH
Confidence                                                         00000011       12334449999999999999


Q ss_pred             HHHHHHH--CCCcccccccCCChHHHHHHHhCc---------HHHHHHHHHhhchhhhhhh-------hcccCCCCchhh
Q 048145          279 LEEIRHK--YPQTLDNVNEKGQNILHVAIMYRQ---------LEIFEIIKEKMQLSLAEWA-------LKIDNEGYTILH  340 (578)
Q Consensus       279 v~~Ll~~--~~~~i~~~d~~G~t~Lh~A~~~g~---------~~iv~~Ll~~~~~~~~~~~-------~~~d~~G~T~Lh  340 (578)
                      +++|++.  .|++++.+|.+|+||||+|++.++         .+++++|+     +.|+++       +.+|.+|+||||
T Consensus       156 v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll-----~~ga~~~~~~~~~~~~d~~g~tpL~  230 (260)
T 3jxi_A          156 VHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLL-----IKCAKLFPDTNLEALLNNDGLSPLM  230 (260)
T ss_dssp             HHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHH-----HHHHHHCTTCCGGGCCCTTSCCHHH
T ss_pred             HHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHH-----HhCcccccccchhhcccCCCCCHHH
Confidence            9999985  789999999999999999999888         79999999     567778       789999999999


Q ss_pred             HHHhcccc
Q 048145          341 QVADMKYY  348 (578)
Q Consensus       341 lA~~~~~~  348 (578)
                      +|+..|+.
T Consensus       231 ~A~~~g~~  238 (260)
T 3jxi_A          231 MAAKTGKI  238 (260)
T ss_dssp             HHHHTTCH
T ss_pred             HHHHcCCH
Confidence            99999975

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=1.2e-27  Score=216.07  Aligned_cols=154  Identities=17%  Similarity=0.164  Sum_probs=136.0

Q ss_pred             CCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCC
Q 048145           29 NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENK  108 (578)
Q Consensus        29 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~  108 (578)
                      .|.||||.|+..|+.+++++|++. +.+     ++.+|..|+||||+|+..|+.+++++|+++|+        +++.+|.
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~-~~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--------~~~~~~~   67 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQ-ENV-----INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA--------DPQLLGK   67 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHH-SSC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC--------CTTCCCT
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHc-CCC-----cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCC--------CCCCcCC
Confidence            588999999999999999999999 888     99999999999999999999999999999998        8889999


Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccc
Q 048145          109 LGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDD  188 (578)
Q Consensus       109 ~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~  188 (578)
                      .|.||||+|+.+|+.+++++|++                                                    +|+++
T Consensus        68 ~g~t~L~~A~~~~~~~~v~~Ll~----------------------------------------------------~g~~~   95 (167)
T 3v31_A           68 GRESALSLACSKGYTDIVKMLLD----------------------------------------------------CGVDV   95 (167)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHH----------------------------------------------------HTCCT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHH----------------------------------------------------CCCCC
Confidence            99999999999888666665554                                                    34433


Q ss_pred             cccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHH
Q 048145          189 CATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILL  268 (578)
Q Consensus       189 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh  268 (578)
                      +..                                                             |..|.|       |||
T Consensus        96 ~~~-------------------------------------------------------------~~~g~t-------~L~  107 (167)
T 3v31_A           96 NEY-------------------------------------------------------------DWNGGT-------PLL  107 (167)
T ss_dssp             TCC-------------------------------------------------------------CTTSCC-------HHH
T ss_pred             CcC-------------------------------------------------------------CCCCCC-------HHH
Confidence            222                                                             235566       999


Q ss_pred             HHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHH
Q 048145          269 FAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIK  317 (578)
Q Consensus       269 ~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll  317 (578)
                      +|+..|+.+++++|++ .|++++..|.+|+||||+|+..|+.+++++|+
T Consensus       108 ~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  155 (167)
T 3v31_A          108 YAVHGNHVKCVKMLLE-SGADPTIETDSGYNSMDLAVALGYRSVQQVIE  155 (167)
T ss_dssp             HHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            9999999999999998 89999999999999999999999999999999

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=1.7e-30  Score=247.38  Aligned_cols=198  Identities=17%  Similarity=0.039  Sum_probs=152.3

Q ss_pred             HHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHh
Q 048145           11 LRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVE   90 (578)
Q Consensus        11 ~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~   90 (578)
                      +.++++...+...+..+.+|.||||.|+..|+.++|++|++. +.+     ++.+|..|+||||+||..|+.+++++|++
T Consensus         2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~-----~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~   75 (229)
T 2vge_A            2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKE-MND-----PSQPNEEGITALHNAICGANYSIVDFLIT   75 (229)
T ss_dssp             --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHH-SSC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhc-CCC-----CCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            344555222333455567788899999999999999999988 888     89999999999999999999999999999


Q ss_pred             hcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhh
Q 048145           91 FSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQI  170 (578)
Q Consensus        91 ~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~  170 (578)
                      +|+        +++.+|..|.||||+|+.+|+.+++                                            
T Consensus        76 ~ga--------~~n~~d~~g~tpLh~A~~~g~~~~v--------------------------------------------  103 (229)
T 2vge_A           76 AGA--------NVNSPDSHGWTPLHCAASCNDTVIC--------------------------------------------  103 (229)
T ss_dssp             TTC--------CTTCCCTTCCCHHHHHHHTTCHHHH--------------------------------------------
T ss_pred             CCC--------CCCCCCCCCCCHHHHHHHcCCHHHH--------------------------------------------
Confidence            998        8888899999999999988875554                                            


Q ss_pred             hHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCccccccc
Q 048145          171 HKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQE  250 (578)
Q Consensus       171 ~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~  250 (578)
                              ++|+++|++++..+                                                          
T Consensus       104 --------~~Ll~~ga~~~~~~----------------------------------------------------------  117 (229)
T 2vge_A          104 --------MALVQHGAAIFATT----------------------------------------------------------  117 (229)
T ss_dssp             --------HHHHTTTCCTTCCC----------------------------------------------------------
T ss_pred             --------HHHHHcCCCccccc----------------------------------------------------------
Confidence                    45555555543320                                                          


Q ss_pred             ccccccccccccchhHHHHH--HhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhh-
Q 048145          251 NDTTKDMTSSMRTMRILLFA--VSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEW-  327 (578)
Q Consensus       251 ~~~~~g~t~~~~g~~pLh~A--a~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~-  327 (578)
                        +..|+|       |||+|  +..|+.+++++|++ .|++++..|..|.|++|.++..+..   ++|+     ..|++ 
T Consensus       118 --~~~g~t-------pL~~A~a~~~~~~~~v~~Ll~-~ga~~~~~~~~~~~~l~~~~~~~~~---~~ll-----~~ga~~  179 (229)
T 2vge_A          118 --LSDGAT-------AFEKCDPYREGYADCATYLAD-VEQSMGLMNSGAVYALWDYSAEFGD---ELSF-----REGESV  179 (229)
T ss_dssp             --SSTTCC-------TGGGCCTTSTTHHHHHHHHHH-HHHHTTTSGGGEEEESSCBCCSSTT---BCCB-----CTTCEE
T ss_pred             --CCCCCC-------HHHHHHHHhcChHHHHHHHHH-cCCCcccccCCchHHHHHHhhcccc---ccCc-----cccccc
Confidence              124555       99999  99999999999998 7889999999999999976555433   4555     34555 


Q ss_pred             -hhcccCCCCchhhHHHhcccccC
Q 048145          328 -ALKIDNEGYTILHQVADMKYYKQ  350 (578)
Q Consensus       328 -~~~~d~~G~T~LhlA~~~~~~~~  350 (578)
                       ++.+|.+|+||||+|+..|+.+.
T Consensus       180 ~~~~~d~~G~TpL~~A~~~g~~~~  203 (229)
T 2vge_A          180 TVLRRDGPEETDWWWAALHGQEGY  203 (229)
T ss_dssp             EEEESSCTTCSSEEEEEETTEEEE
T ss_pred             cccccCCCcccHHHHHHHcCCcce
Confidence             78899999999999999998643

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.95  E-value=1.9e-27  Score=215.27  Aligned_cols=159  Identities=18%  Similarity=0.223  Sum_probs=135.0

Q ss_pred             ccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCc
Q 048145           24 GYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPL  103 (578)
Q Consensus        24 ~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~  103 (578)
                      ......+.|+||.||+.|+.++|++|+++ +.+     ++.+|..|+||||+|+..|+.+++++|+++|+        ++
T Consensus         8 ~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~-g~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--------~~   73 (169)
T 2y1l_E            8 HHHGSDLGKKLLEAARAGRDDEVRILMAN-GAD-----VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA--------DV   73 (169)
T ss_dssp             -----CHHHHHHHHHHHTCHHHHHHHHHT-TCC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC--------CT
T ss_pred             ccCCCcccchHHHHHHcCCHHHHHHHHHC-CCC-----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC--------CC
Confidence            34456778999999999999999999998 888     99999999999999999999999999999998        88


Q ss_pred             ccCCCCCCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHh
Q 048145          104 VVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVE  183 (578)
Q Consensus       104 ~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~  183 (578)
                      +.+|..|.||||+|+..|+.+++++|+                                                    +
T Consensus        74 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll----------------------------------------------------~  101 (169)
T 2y1l_E           74 NAVDHAGMTPLRLAALFGHLEIVEVLL----------------------------------------------------K  101 (169)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHH----------------------------------------------------H
T ss_pred             CccCCCCCCHHHHHHHcCCHHHHHHHH----------------------------------------------------H
Confidence            899999999999999988766555554                                                    4


Q ss_pred             ccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccc
Q 048145          184 KRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRT  263 (578)
Q Consensus       184 ~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g  263 (578)
                      +|++++..                                                             |..|.|     
T Consensus       102 ~g~~~~~~-------------------------------------------------------------~~~g~t-----  115 (169)
T 2y1l_E          102 NGADVNAN-------------------------------------------------------------DMEGHT-----  115 (169)
T ss_dssp             TTCCTTCC-------------------------------------------------------------CTTSCC-----
T ss_pred             cCCCCCCC-------------------------------------------------------------CCCCCC-----
Confidence            44443222                                                             235556     


Q ss_pred             hhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHH
Q 048145          264 MRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIK  317 (578)
Q Consensus       264 ~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll  317 (578)
                        |||+|+..|+.+++++|++ .+++++..|..|+||||+|+++|+.+++++|+
T Consensus       116 --~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  166 (169)
T 2y1l_E          116 --PLHLAAMFGHLEIVEVLLK-NGADVNAQDKFGKTAFDISIDNGNEDLAEILQ  166 (169)
T ss_dssp             --HHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             --HHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHH
Confidence              9999999999999999998 78999999999999999999999999999998

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=1.9e-27  Score=213.50  Aligned_cols=155  Identities=19%  Similarity=0.246  Sum_probs=132.0

Q ss_pred             CCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCC
Q 048145           28 FNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVEN  107 (578)
Q Consensus        28 ~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n  107 (578)
                      ....||||.|+..|+.++|++|+++ +.+     ++.+|..|+||||+|+. |+.+++++|+++|+        +++.+|
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~-~~~-----~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~--------~~~~~~   67 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQN-NVN-----VNAQNGFGRTALQVMKL-GNPEIARRLLLRGA--------NPDLKD   67 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTS-CCC-----TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTC--------CTTCCC
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhC-CCC-----ccccCccCccHHHHHHc-CcHHHHHHHHHcCC--------CCCCCC
Confidence            3567999999999999999999998 888     99999999999999999 99999999999998        889999


Q ss_pred             CCCCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhcccc
Q 048145          108 KLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRID  187 (578)
Q Consensus       108 ~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~  187 (578)
                      ..|.||||+|+.+|+.+++++|+                                                    ++|++
T Consensus        68 ~~g~t~L~~A~~~~~~~~v~~Ll----------------------------------------------------~~g~~   95 (162)
T 1ihb_A           68 RTGFAVIHDAARAGFLDTLQTLL----------------------------------------------------EFQAD   95 (162)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHH----------------------------------------------------HTTCC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHH----------------------------------------------------HcCCC
Confidence            99999999999988766555554                                                    44444


Q ss_pred             ccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHH
Q 048145          188 DCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRIL  267 (578)
Q Consensus       188 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pL  267 (578)
                      ++..                                                             |..|.|       ||
T Consensus        96 ~~~~-------------------------------------------------------------~~~g~t-------~L  107 (162)
T 1ihb_A           96 VNIE-------------------------------------------------------------DNEGNL-------PL  107 (162)
T ss_dssp             TTCC-------------------------------------------------------------CTTSCC-------HH
T ss_pred             CCCc-------------------------------------------------------------CCCCCC-------HH
Confidence            3322                                                             235556       99


Q ss_pred             HHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHH
Q 048145          268 LFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIK  317 (578)
Q Consensus       268 h~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll  317 (578)
                      |+|++.|+.+++++|++..+..++..|..|+||||+|+++|+.+++++|+
T Consensus       108 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll  157 (162)
T 1ihb_A          108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ  157 (162)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            99999999999999998655557999999999999999999999999999

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=2.4e-27  Score=216.77  Aligned_cols=169  Identities=18%  Similarity=0.123  Sum_probs=141.8

Q ss_pred             CCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCC
Q 048145           28 FNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVEN  107 (578)
Q Consensus        28 ~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n  107 (578)
                      .++.++||.|+..|+.++|+.|++..+.+     ++.+|..|+||||+|+..|+.+++++|+++|+        +++.+|
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--------~~~~~~   69 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTEND-----LNQGDDHGFSPLHWACREGRSAVVEMLIMRGA--------RINVMN   69 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC--------CTTCCC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCccc-----ccccCCCCCCHHHHHHHcCcHHHHHHHHHcCC--------CCCCcC
Confidence            46789999999999999999999987777     89999999999999999999999999999998        899999


Q ss_pred             CCCCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhcccc
Q 048145          108 KLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRID  187 (578)
Q Consensus       108 ~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~  187 (578)
                      ..|.||||+|+..|+.+++++|+                                                    ++|++
T Consensus        70 ~~g~t~L~~A~~~~~~~~v~~Ll----------------------------------------------------~~g~~   97 (179)
T 3f6q_A           70 RGDDTPLHLAASHGHRDIVQKLL----------------------------------------------------QYKAD   97 (179)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHH----------------------------------------------------HTTCC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHH----------------------------------------------------HcCCC
Confidence            99999999999988866555554                                                    44444


Q ss_pred             ccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHH
Q 048145          188 DCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRIL  267 (578)
Q Consensus       188 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pL  267 (578)
                      ++..                                                             |..|.|       ||
T Consensus        98 ~~~~-------------------------------------------------------------d~~g~t-------~L  109 (179)
T 3f6q_A           98 INAV-------------------------------------------------------------NEHGNV-------PL  109 (179)
T ss_dssp             TTCC-------------------------------------------------------------CTTSCC-------HH
T ss_pred             CCcc-------------------------------------------------------------CCCCCC-------HH
Confidence            3322                                                             235566       99


Q ss_pred             HHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCC
Q 048145          268 LFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEG  335 (578)
Q Consensus       268 h~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G  335 (578)
                      |+|+..|+.+++++|++ .|++++..|.+|+||||+|+..++.+++++|+     +.|++++..+.++
T Consensus       110 ~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~-----~~g~~~~~~~~~~  171 (179)
T 3f6q_A          110 HYACFWGQDQVAEDLVA-NGALVSICNKYGEMPVDKAKAPLRELLRERAE-----KMGQNLNRIPYKD  171 (179)
T ss_dssp             HHHHHTTCHHHHHHHHH-TTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHH-----HTTCCCSCBCCCC
T ss_pred             HHHHHcCCHHHHHHHHH-CCCCcchhccCCCCcHHHHHHHHHHHHHHHHH-----HhhcCcccCCccc
Confidence            99999999999999998 88999999999999999999999999999999     5666777776655

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=8e-27  Score=207.47  Aligned_cols=151  Identities=19%  Similarity=0.215  Sum_probs=127.9

Q ss_pred             CCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCC
Q 048145           30 GECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKL  109 (578)
Q Consensus        30 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~  109 (578)
                      ..||||.|++.|+.++|++|++. +.+     ++ .|..|.||||+|+..|+.+++++|++.|+        +++.+|..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~-g~~-----~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--------~~~~~~~~   66 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMAN-GAP-----FT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGV--------SRDARTKV   66 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHH-TCC-----CC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTC--------CTTCCCTT
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHc-CCC-----CC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCC--------CCCCCCCC
Confidence            46899999999999999999998 766     54 58889999999999999999999999998        78888999


Q ss_pred             CCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhcccccc
Q 048145          110 GETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDC  189 (578)
Q Consensus       110 g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~  189 (578)
                      |.||||+|+..|+.+++++|                                                    +++|++++
T Consensus        67 g~t~L~~A~~~~~~~~v~~L----------------------------------------------------l~~g~~~~   94 (153)
T 1awc_B           67 DRTPLHMAASEGHANIVEVL----------------------------------------------------LKHGADVN   94 (153)
T ss_dssp             CCCHHHHHHHHTCHHHHHHH----------------------------------------------------HTTTCCTT
T ss_pred             CCCHHHHHHHcChHHHHHHH----------------------------------------------------HHcCCCCC
Confidence            99999999988875555544                                                    44454443


Q ss_pred             ccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHH
Q 048145          190 ATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLF  269 (578)
Q Consensus       190 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~  269 (578)
                      ..                                                             |..|.|       |||+
T Consensus        95 ~~-------------------------------------------------------------~~~g~t-------~L~~  106 (153)
T 1awc_B           95 AK-------------------------------------------------------------DMLKMT-------ALHW  106 (153)
T ss_dssp             CC-------------------------------------------------------------CTTSCC-------HHHH
T ss_pred             CC-------------------------------------------------------------CCCCCC-------HHHH
Confidence            22                                                             235566       9999


Q ss_pred             HHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHH
Q 048145          270 AVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEII  316 (578)
Q Consensus       270 Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~L  316 (578)
                      |+..|+.+++++|++ .|++++.+|.+|+||||+|+.+|+.+++++|
T Consensus       107 A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          107 ATEHNHQEVVELLIK-YGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            999999999999998 7999999999999999999999999999987

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.94  E-value=4.5e-27  Score=230.63  Aligned_cols=179  Identities=17%  Similarity=0.238  Sum_probs=156.1

Q ss_pred             cccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCC-chhhhhhhccCCCCChHHHHHH---
Q 048145            2 ALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPV-EKRLEALMQTDDNGNTAVHALA---   77 (578)
Q Consensus         2 a~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~-~~~~~~l~~~d~~G~TpLh~Aa---   77 (578)
                      +..|+.+.+..++.+ ..+...+..|.+|+||||+|+..|+.++|++|++. +. +     ++.+|..|.||||+|+   
T Consensus        84 ~~~~~~~~~~~l~~~-~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~-g~~~-----~~~~~~~g~tpL~~a~~~~  156 (276)
T 4hbd_A           84 LVRRHLVTFRAMSAR-LLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDS-GVCK-----VDKQNRAGYSPIMLTALAT  156 (276)
T ss_dssp             HHHHHHHHHHHHCHH-HHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-SCCC-----TTCCCTTSCCHHHHGGGCC
T ss_pred             HHHHHHHHHHHHHHH-HHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHC-CCCc-----CCCCCCCCCCHHHHHHHHH
Confidence            345666666666665 33445788999999999999999999999999999 65 8     9999999999999999   


Q ss_pred             --HcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHH
Q 048145           78 --TINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAI  150 (578)
Q Consensus        78 --~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~  150 (578)
                        ..|+.++++.|++.|.        +.+..+..|.||||+|+.+|+.+++++|++.     ..|.+|.||||+|+    
T Consensus       157 ~~~~~~~~~v~~Ll~~g~--------~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~----  224 (276)
T 4hbd_A          157 LKTQDDIETVLQLFRLGN--------INAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCAC----  224 (276)
T ss_dssp             CCSHHHHHHHHHHHHHSC--------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----
T ss_pred             hhhhhhHHHHHHHHHcCC--------CccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHH----
Confidence              7789999999999998        7888999999999999999999999999998     57899999999999    


Q ss_pred             HHHhccCchHHHHHHHhhhhhHHHHHHHHHHHh-ccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHH
Q 048145          151 WRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVE-KRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQ  229 (578)
Q Consensus       151 ~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~-~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  229 (578)
                          ..|+                .+++++|++ .|++++..                                      
T Consensus       225 ----~~g~----------------~~iv~~Ll~~~gad~~~~--------------------------------------  246 (276)
T 4hbd_A          225 ----EHGH----------------KEIAGLLLAVPSCDISLT--------------------------------------  246 (276)
T ss_dssp             ----HHTC----------------HHHHHHHHTSTTCCTTCC--------------------------------------
T ss_pred             ----HCCC----------------HHHHHHHHhcCCCCCcCc--------------------------------------
Confidence                6677                899999999 77776543                                      


Q ss_pred             HhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCC
Q 048145          230 VKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYP  287 (578)
Q Consensus       230 ~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~  287 (578)
                                             |..|.|       |||+|+..|+.+++++|+++.+
T Consensus       247 -----------------------d~~g~T-------pL~~A~~~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          247 -----------------------DRDGST-------ALMVALDAGQSEIASMLYSRMN  274 (276)
T ss_dssp             -----------------------CTTSCC-------HHHHHHHHTCHHHHHHHHHHCC
T ss_pred             -----------------------CCCCCC-------HHHHHHHcCCHHHHHHHHhccC
Confidence                                   335666       9999999999999999998654

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.94  E-value=1.1e-26  Score=214.95  Aligned_cols=153  Identities=18%  Similarity=0.102  Sum_probs=134.8

Q ss_pred             hhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHhccccCCccH
Q 048145           62 LMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISI  141 (578)
Q Consensus        62 l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~  141 (578)
                      ++.+|..|+||||+|+..|+.+++++|++.|+        +++.+|..|.||||+|+.+|+.+++++|++          
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~--------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----------   89 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFD--------KLEDKDIEGSTALIWAVKNNRLGIAEKLLS----------   89 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHC--------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHH----------
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcc--------ccccccccCccHHHHHHHcCCHHHHHHHHH----------
Confidence            78899999999999999999999999999999        889999999999999999988666665554          


Q ss_pred             HHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchh
Q 048145          142 LSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAG  221 (578)
Q Consensus       142 Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  221 (578)
                                                                +|++++..                              
T Consensus        90 ------------------------------------------~g~~~~~~------------------------------   97 (192)
T 2rfm_A           90 ------------------------------------------KGSNVNTK------------------------------   97 (192)
T ss_dssp             ------------------------------------------HTCCTTCC------------------------------
T ss_pred             ------------------------------------------CCCCCCCC------------------------------
Confidence                                                      34433221                              


Q ss_pred             hHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHH
Q 048145          222 EWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNIL  301 (578)
Q Consensus       222 ~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~L  301 (578)
                                                     |..|.|       |||+|+..|+.+++++|++ .+++++.+|..|+|||
T Consensus        98 -------------------------------~~~g~t-------~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L  138 (192)
T 2rfm_A           98 -------------------------------DFSGKT-------PLMWSIIFGYSEMSYFLLE-HGANVNDRNLEGETPL  138 (192)
T ss_dssp             -------------------------------CTTSCC-------HHHHHHHHTCHHHHHHHHH-TTCCSSCCCTTCCCHH
T ss_pred             -------------------------------CCCCCc-------HHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHH
Confidence                                           235566       9999999999999999998 8999999999999999


Q ss_pred             HHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcccc
Q 048145          302 HVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYY  348 (578)
Q Consensus       302 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~  348 (578)
                      |+|+.+|+.+++++|+     +.|++++.+|..|+||||+|+..++.
T Consensus       139 ~~A~~~~~~~~v~~Ll-----~~ga~~~~~~~~g~t~l~~A~~~~~~  180 (192)
T 2rfm_A          139 IVASKYGRSEIVKKLL-----ELGADISARDLTGLTAEASARIFGRQ  180 (192)
T ss_dssp             HHHHHHTCHHHHHHHH-----HTTCCTTCBCTTSCBHHHHHHHTTCH
T ss_pred             HHHHHcCCHHHHHHHH-----HCCCCCCCcCCCCCCHHHHHHHhCcH
Confidence            9999999999999999     56778999999999999999999865

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=4.8e-27  Score=211.64  Aligned_cols=157  Identities=20%  Similarity=0.198  Sum_probs=133.4

Q ss_pred             CCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCccc
Q 048145           26 RTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVV  105 (578)
Q Consensus        26 ~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~  105 (578)
                      .|.+|.||||.|++.|+.++|+.|++..+.+     ++..|..|+||||+|+..|+.+++++|+++|+        +++.
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--------~~~~   70 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVN-----CRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGA--------DVHA   70 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTT-----CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTC--------CTTC
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCC-----ccccccCCCCHHHHHHHcChHHHHHHHHhcCC--------CCCc
Confidence            3667899999999999999999999975667     88888999999999999999999999999998        8899


Q ss_pred             CCCCCCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhcc
Q 048145          106 ENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKR  185 (578)
Q Consensus       106 ~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g  185 (578)
                      +|..|.||||+|+..|+.+++++|+                                                    ++|
T Consensus        71 ~~~~g~t~L~~A~~~~~~~~v~~Ll----------------------------------------------------~~g   98 (165)
T 3twr_A           71 KDKGGLVPLHNACSYGHYEVAELLV----------------------------------------------------KHG   98 (165)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHH----------------------------------------------------HTT
T ss_pred             cCCCCCCHHHHHHHcCcHHHHHHHH----------------------------------------------------hCC
Confidence            9999999999999988766555554                                                    444


Q ss_pred             ccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchh
Q 048145          186 IDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMR  265 (578)
Q Consensus       186 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~  265 (578)
                      ++++..                                                             |..|.|       
T Consensus        99 ~~~~~~-------------------------------------------------------------~~~g~t-------  110 (165)
T 3twr_A           99 AVVNVA-------------------------------------------------------------DLWKFT-------  110 (165)
T ss_dssp             CCTTCC-------------------------------------------------------------CTTCCC-------
T ss_pred             CCCCCc-------------------------------------------------------------CCCCCC-------
Confidence            443322                                                             235556       


Q ss_pred             HHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHH
Q 048145          266 ILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIK  317 (578)
Q Consensus       266 pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll  317 (578)
                      |||+|+..|+.+++++|++ .+++++.+|.+|+||||+|++ |+.+++++|+
T Consensus       111 ~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~  160 (165)
T 3twr_A          111 PLHEAAAKGKYEICKLLLQ-HGADPTKKNRDGNTPLDLVKD-GDTDIQDLLR  160 (165)
T ss_dssp             HHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCChhHhHhc-CChHHHHHHh
Confidence            9999999999999999998 799999999999999999877 8899999998

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.94  E-value=1.6e-26  Score=206.13  Aligned_cols=152  Identities=20%  Similarity=0.262  Sum_probs=132.1

Q ss_pred             CCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCC
Q 048145           30 GECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKL  109 (578)
Q Consensus        30 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~  109 (578)
                      +.||||.|+..|+.++++.|++..+.+     ++.+|..|+||||+ +..|+.+++++|+++|+        +++.+|..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~-----~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~--------~~~~~~~~   67 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVH-----PDALNRFGKTALQV-MMFGSTAIALELLKQGA--------SPNVQDTS   67 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCC-----TTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTC--------CTTCCCTT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcC-----ccccCCCCCcHHHH-HHcCCHHHHHHHHHCCC--------CCCCcCCC
Confidence            579999999999999999999985567     88999999999999 99999999999999999        88999999


Q ss_pred             CCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhcccccc
Q 048145          110 GETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDC  189 (578)
Q Consensus       110 g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~  189 (578)
                      |.||||+|+.+|+.+++++|                                                    +++|++++
T Consensus        68 g~t~L~~A~~~~~~~~v~~L----------------------------------------------------l~~g~~~~   95 (156)
T 1bd8_A           68 GTSPVHDAARTGFLDTLKVL----------------------------------------------------VEHGADVN   95 (156)
T ss_dssp             SCCHHHHHHHTTCHHHHHHH----------------------------------------------------HHTTCCSC
T ss_pred             CCCHHHHHHHcCcHHHHHHH----------------------------------------------------HHcCCCCC
Confidence            99999999998886555555                                                    44454433


Q ss_pred             ccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHH
Q 048145          190 ATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLF  269 (578)
Q Consensus       190 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~  269 (578)
                      ..                                                             |..|+|       |||+
T Consensus        96 ~~-------------------------------------------------------------~~~g~t-------~L~~  107 (156)
T 1bd8_A           96 VP-------------------------------------------------------------DGTGAL-------PIHL  107 (156)
T ss_dssp             CC-------------------------------------------------------------CTTSCC-------HHHH
T ss_pred             Cc-------------------------------------------------------------CCCCCc-------HHHH
Confidence            22                                                             235566       9999


Q ss_pred             HHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHH
Q 048145          270 AVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIK  317 (578)
Q Consensus       270 Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll  317 (578)
                      |+..|+.+++++|++ . ++++..|.+|+||||+|+++|+.+++++|+
T Consensus       108 A~~~~~~~~v~~Ll~-~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  153 (156)
T 1bd8_A          108 AVQEGHTAVVSFLAA-E-SDLHRRDARGLTPLELALQRGAQDLVDILQ  153 (156)
T ss_dssp             HHHHTCHHHHHHHHT-T-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHH
T ss_pred             HHHhChHHHHHHHHh-c-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            999999999999998 4 889999999999999999999999999998

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=3.5e-27  Score=226.38  Aligned_cols=179  Identities=9%  Similarity=0.016  Sum_probs=122.8

Q ss_pred             CCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCC
Q 048145           28 FNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVEN  107 (578)
Q Consensus        28 ~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n  107 (578)
                      ..|.||||.|++.|+.+.++.|+++ |++     ++. +..|.||||+|+..|+.++++.|++.|+        +++.+|
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~-g~~-----~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~--------~~~~~d   67 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAH-GMR-----VKF-NPLPLALLLDSSLEGEFDLVQRIIYEVD--------DPSLPN   67 (239)
T ss_dssp             -----------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTS--------SCCCCC
T ss_pred             ccccccCchhhhhhhHHHHHHHhcc-CCC-----ccc-CchhhHHHHHHHHcCCHHHHHHHHHcCC--------CCCCcC
Confidence            4699999999999999999999999 888     765 4789999999999999999999999999        899999


Q ss_pred             CCCCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhcccc
Q 048145          108 KLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRID  187 (578)
Q Consensus       108 ~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~  187 (578)
                      ..|.||||+|+.+|+.+++++|+                                                    ++|++
T Consensus        68 ~~g~t~L~~A~~~g~~~~v~~Ll----------------------------------------------------~~ga~   95 (239)
T 1ycs_B           68 DEGITALHNAVCAGHTEIVKFLV----------------------------------------------------QFGVN   95 (239)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHH----------------------------------------------------HHTCC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHH----------------------------------------------------HcCCC
Confidence            99999999999998866655554                                                    44444


Q ss_pred             ccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHH
Q 048145          188 DCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRIL  267 (578)
Q Consensus       188 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pL  267 (578)
                      ++..                                                             |..|+|       ||
T Consensus        96 ~~~~-------------------------------------------------------------d~~g~t-------pL  107 (239)
T 1ycs_B           96 VNAA-------------------------------------------------------------DSDGWT-------PL  107 (239)
T ss_dssp             TTCC-------------------------------------------------------------CTTCCC-------HH
T ss_pred             CCcc-------------------------------------------------------------CCCCCC-------HH
Confidence            4322                                                             335666       99


Q ss_pred             HHHHhcCHHHHHHHHHHHCCCcccccccCCC-hHHHHH--HHhCcHHHHHHHHHhhchhhhhhhhcc---------cCCC
Q 048145          268 LFAVSNGIIEILEEIRHKYPQTLDNVNEKGQ-NILHVA--IMYRQLEIFEIIKEKMQLSLAEWALKI---------DNEG  335 (578)
Q Consensus       268 h~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~-t~Lh~A--~~~g~~~iv~~Ll~~~~~~~~~~~~~~---------d~~G  335 (578)
                      |+|+..|+.+++++|++ .+++++..|..|. ||||+|  +..|+.+++++|+     ..+++++..         |..|
T Consensus       108 ~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll-----~~~a~~~~~~~~~~~al~d~~~  181 (239)
T 1ycs_B          108 HCAASCNNVQVCKFLVE-SGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY-----GVQEKMGIMNKGVIYALWDYEP  181 (239)
T ss_dssp             HHHHHTTCHHHHHHHHH-TTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHH-----HHHHHTTTTGGGEEEESSCBCC
T ss_pred             HHHHHcCCHHHHHHHHH-cCCCcceecCCCCcchHHHHHHhhhccHHHHHHHH-----HhhhcccccccceEEEEeccCC
Confidence            99999999999999998 8999999998887 999999  8899999999999     455556654         7778


Q ss_pred             CchhhHHHhccc
Q 048145          336 YTILHQVADMKY  347 (578)
Q Consensus       336 ~T~LhlA~~~~~  347 (578)
                      .|+++++.+.|.
T Consensus       182 ~~~~eLa~~~G~  193 (239)
T 1ycs_B          182 QNDDELPMKEGD  193 (239)
T ss_dssp             SSTTBCCBCSSC
T ss_pred             CCCCcccccCCC
Confidence            999999988875

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.93  E-value=9e-26  Score=204.77  Aligned_cols=130  Identities=14%  Similarity=0.165  Sum_probs=112.6

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN   80 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g   80 (578)
                      ||..|+.+.++.++++  .....+..|..|.||||+|+..|+.++|++|++. +++     ++.+|..|+||||+|+..|
T Consensus         9 A~~~g~~~~v~~ll~~--~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~-----~~~~~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            9 LAAQGELDQLKEHLRK--GDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW-GAD-----PHILAKERESALSLASTGG   80 (172)
T ss_dssp             HHHTTCHHHHHHHHTT--CSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCC-----TTCCCTTCCCHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHc--CcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCC-----chhhcccCCCHHHHHHHCC
Confidence            5789999999999988  4555788899999999999999999999999999 999     9999999999999999999


Q ss_pred             CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHH
Q 048145           81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKM  146 (578)
Q Consensus        81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~  146 (578)
                      +.+++++|+++|+        +++.+|..|.||||+|+..|+.+++++|++.     ..+..|.||||+|+
T Consensus        81 ~~~~v~~Ll~~g~--------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  143 (172)
T 3v30_A           81 YTDIVGLLLERDV--------DINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAV  143 (172)
T ss_dssp             CHHHHHHHHTTTC--------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CHHHHHHHHHcCC--------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence            9999999999999        8999999999999999999987777777664     23334444444444

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.93  E-value=1.6e-25  Score=202.15  Aligned_cols=147  Identities=18%  Similarity=0.220  Sum_probs=128.2

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHHH
Q 048145           68 NGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMY  147 (578)
Q Consensus        68 ~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~  147 (578)
                      .|.||||.|++.|+.++++.|++.++        +++.+|..|.||||+|+..|+.+++++|+                 
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~--------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-----------------   56 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQEN--------VINHTDEEGFTPLMWAAAHGQIAVVEFLL-----------------   56 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSS--------CTTCCCTTSCCHHHHHHHTTCHHHHHHHH-----------------
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCC--------CcCCCCCCCCCHHHHHHHCCCHHHHHHHH-----------------
Confidence            58999999999999999999999998        89999999999999999998866655554                 


Q ss_pred             HHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHH
Q 048145          148 IAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELM  227 (578)
Q Consensus       148 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  227 (578)
                                                         ++|++++..                                    
T Consensus        57 -----------------------------------~~g~~~~~~------------------------------------   65 (167)
T 3v31_A           57 -----------------------------------QNGADPQLL------------------------------------   65 (167)
T ss_dssp             -----------------------------------HTTCCTTCC------------------------------------
T ss_pred             -----------------------------------HcCCCCCCc------------------------------------
Confidence                                               444443222                                    


Q ss_pred             HHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHh
Q 048145          228 IQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMY  307 (578)
Q Consensus       228 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~  307 (578)
                                               +..|.|       |||+|+..|+.+++++|++ .+.+++..|..|+||||+|+..
T Consensus        66 -------------------------~~~g~t-------~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~  112 (167)
T 3v31_A           66 -------------------------GKGRES-------ALSLACSKGYTDIVKMLLD-CGVDVNEYDWNGGTPLLYAVHG  112 (167)
T ss_dssp             -------------------------CTTCCC-------HHHHHHHHTCHHHHHHHHH-HTCCTTCCCTTSCCHHHHHHHT
T ss_pred             -------------------------CCCCCc-------HHHHHHHcCCHHHHHHHHH-CCCCCCcCCCCCCCHHHHHHHc
Confidence                                     224555       9999999999999999998 7899999999999999999999


Q ss_pred             CcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcccc
Q 048145          308 RQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYY  348 (578)
Q Consensus       308 g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~  348 (578)
                      |+.+++++|+     +.|++++.+|.+|+||||+|+..++.
T Consensus       113 ~~~~~v~~Ll-----~~g~~~~~~~~~g~t~l~~A~~~~~~  148 (167)
T 3v31_A          113 NHVKCVKMLL-----ESGADPTIETDSGYNSMDLAVALGYR  148 (167)
T ss_dssp             TCHHHHHHHH-----HTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             CCHHHHHHHH-----HcCCCCCCcCCCCCCHHHHHHHcCcH
Confidence            9999999999     56778999999999999999999865

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.93  E-value=6.7e-28  Score=245.31  Aligned_cols=127  Identities=14%  Similarity=0.113  Sum_probs=93.9

Q ss_pred             cCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCC--
Q 048145           25 YRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNP--  102 (578)
Q Consensus        25 ~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~--  102 (578)
                      ..+.+++||||+||+.|+.++|++|++. +..  ....+..|..|.||||+||+.|+.++|++|+++|+        +  
T Consensus        87 ~~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~-ga~--~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~ga--------d~~  155 (376)
T 2aja_A           87 KKGIKSEVICFVAAITGCSSALDTLCLL-LTS--DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAP--------TEI  155 (376)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHHHHHHTTC---C--CSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCT--------TTH
T ss_pred             HcCCCcCCHHHHHHHcCCHHHHHHHHHc-CCc--HHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCC--------Ccc
Confidence            3455677999999999999999999988 542  00022345567889999999999999999999987        3  


Q ss_pred             -cccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----c--cccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHH
Q 048145          103 -LVVENKLGETPLYRAASVGKIEALRYFAEQ-----V--NQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKA  174 (578)
Q Consensus       103 -~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~--~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~  174 (578)
                       .+..+.+ .||||+|+.+|+.++|++|+++     .  .|..|.||||+|+.       ..|+                
T Consensus       156 ~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~-------~~G~----------------  211 (376)
T 2aja_A          156 MAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAV-------GRGH----------------  211 (376)
T ss_dssp             HHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHS-------TTCC----------------
T ss_pred             ccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHH-------HCCC----------------
Confidence             2333333 8999999999999999999987     2  56678899999871       2466                


Q ss_pred             HHHHHHHHhccc
Q 048145          175 VALVKMLVEKRI  186 (578)
Q Consensus       175 ~~~v~~Ll~~g~  186 (578)
                      .+++++|+++|+
T Consensus       212 ~eiv~~Ll~~ga  223 (376)
T 2aja_A          212 HNVINFLLDCPV  223 (376)
T ss_dssp             HHHHHHHTTSHH
T ss_pred             HHHHHHHHhCCC
Confidence            889999987653

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.93  E-value=3.6e-28  Score=247.26  Aligned_cols=253  Identities=9%  Similarity=0.030  Sum_probs=169.8

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN   80 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g   80 (578)
                      ||..|+.+.++.+++...+.......+..|.||||+||..|+.++|++|+++ +++.....++.+|   .||||+||..|
T Consensus        99 Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~-gad~~~~~i~~~~---~TpLh~Aa~~G  174 (376)
T 2aja_A           99 AAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL-APTEIMAMIQAEN---YHAFRLAAENG  174 (376)
T ss_dssp             HHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHS-CTTTHHHHHSHHH---HHHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhC-CCCccccccCCCC---CCHHHHHHHCC
Confidence            6788999977777766111112234566789999999999999999999999 6430000033333   99999999999


Q ss_pred             CHHHHHHHHhhcCCCCCCCCCCccc--CCCCCCCHHHHHH-HcCcHHHHHHHHHhccccCCccHHHHHHHHHHHHHhccC
Q 048145           81 NVDVAKTLVEFSKQSNDADKNPLVV--ENKLGETPLYRAA-SVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQG  157 (578)
Q Consensus        81 ~~~iv~~Ll~~g~~~~~~~~~~~~~--~n~~g~TpLh~A~-~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~~~~~~~~~~G  157 (578)
                      +.++|++|+++|+        +++.  .|..|.||||+|+ .+|+.++|++|++.  ...|.||||+|+        ..|
T Consensus       175 ~~eiv~~Ll~~ga--------~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~--ga~~~taL~~Aa--------~~g  236 (376)
T 2aja_A          175 HLHVLNRLCELAP--------TEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC--PVMLAYAEIHEF--------EYG  236 (376)
T ss_dssp             CHHHHHHHHHSCG--------GGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTS--HHHHHHHHHCTT--------TTT
T ss_pred             CHHHHHHHHHcCC--------ccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhC--CCccchHHHHHH--------HCC
Confidence            9999999999999        7776  8889999999999 99999999999985  234899999999        888


Q ss_pred             chHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccc
Q 048145          158 CPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNK  237 (578)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  237 (578)
                      +                .+++++|+++|++++..+       ++++.|+..+..+....     +....           
T Consensus       237 ~----------------~evv~lL~~~ga~~~~~~-------~~l~~A~~~g~~~vv~~-----~~~~~-----------  277 (376)
T 2aja_A          237 E----------------KYVNPFIARHVNRLKEMH-------DAFKLSNPDGVFDLVTK-----SECLQ-----------  277 (376)
T ss_dssp             T----------------TTHHHHHHHHHHHHHHHH-------TTTTTTSSSSCCCCSSH-----HHHHH-----------
T ss_pred             C----------------HHHHHHHHhcCccccccc-------HHHHHHHHCCChhhhcH-----Hhhhh-----------
Confidence            8                899999999998775442       24455554444332110     00000           


Q ss_pred             cccccCcccccccccccccccccccchh---HHHHHHhcCHHHHHHHHHHHCCC-----cccccccCCChHHHHHHHhCc
Q 048145          238 AHVDQYPQAVDQENDTTKDMTSSMRTMR---ILLFAVSNGIIEILEEIRHKYPQ-----TLDNVNEKGQNILHVAIMYRQ  309 (578)
Q Consensus       238 ~l~~~~~~~~~~~~~~~~g~t~~~~g~~---pLh~Aa~~G~~~iv~~Ll~~~~~-----~i~~~d~~G~t~Lh~A~~~g~  309 (578)
                                               +..   .|..+...+..+.+++|++ .+.     ......+.+.||||+|++.|+
T Consensus       278 -------------------------~~~~~~~li~~~~~~~~~~~~~Ll~-~~~vk~l~~~g~~~n~~~~~L~~A~~~g~  331 (376)
T 2aja_A          278 -------------------------GFYMLRNLIRRNDEVLLDDIRFLLS-IPGIKALAPTATIPGDANELLRLALRLGN  331 (376)
T ss_dssp             -------------------------HHHHHHHHHHHCCGGGHHHHHHHHT-STTTGGGSSCCSSTTCCCHHHHHHHHHTC
T ss_pred             -------------------------hHHHHHHHHHcchhhHHHHHHHHHh-ChhhhhhhccCCCCCCccHHHHHHHHcCc
Confidence                                     000   1122223355788888886 332     112233467899999999999


Q ss_pred             HHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcccc
Q 048145          310 LEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYY  348 (578)
Q Consensus       310 ~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~  348 (578)
                      .+++++|+ +    .   ...+|..|+|++.+|...|+.
T Consensus       332 ~e~v~lLl-~----~---~~v~~~~~~~~~~~~~~~~~~  362 (376)
T 2aja_A          332 QGACALLL-S----I---PSVLALTKANNYYINETGGRL  362 (376)
T ss_dssp             TTHHHHHT-T----S---HHHHHSCC-------------
T ss_pred             HHHHHHHH-c----C---hHHHHHHHHhccccccccccc
Confidence            99999999 3    2   256788899999999988865

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.92  E-value=4.9e-25  Score=195.83  Aligned_cols=145  Identities=19%  Similarity=0.155  Sum_probs=123.6

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHHHH
Q 048145           69 GNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYI  148 (578)
Q Consensus        69 G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~~  148 (578)
                      +.||||.|++.|+.+++++|++.|+        +++ .+..|.||||+|+.+|+.+++++|                   
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~--------~~~-~~~~g~t~L~~A~~~~~~~~v~~L-------------------   53 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGA--------PFT-TDWLGTSPLHLAAQYGHFSTTEVL-------------------   53 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTC--------CCC-CCTTCCCHHHHHHHHTCHHHHHHH-------------------
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCC--------CCC-cCCCCCCHHHHHHHcCCHHHHHHH-------------------
Confidence            4689999999999999999999998        554 578899999999998876555555                   


Q ss_pred             HHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHH
Q 048145          149 AIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMI  228 (578)
Q Consensus       149 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~  228 (578)
                                                       +++|++++..                                     
T Consensus        54 ---------------------------------l~~g~~~~~~-------------------------------------   63 (153)
T 1awc_B           54 ---------------------------------LRAGVSRDAR-------------------------------------   63 (153)
T ss_dssp             ---------------------------------HTTTCCTTCC-------------------------------------
T ss_pred             ---------------------------------HHcCCCCCCC-------------------------------------
Confidence                                             4444443222                                     


Q ss_pred             HHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhC
Q 048145          229 QVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYR  308 (578)
Q Consensus       229 ~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g  308 (578)
                                              |..|.|       |||+|+..|+.+++++|++ .+.+++.+|..|+||||+|+.+|
T Consensus        64 ------------------------~~~g~t-------~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~  111 (153)
T 1awc_B           64 ------------------------TKVDRT-------PLHMAASEGHANIVEVLLK-HGADVNAKDMLKMTALHWATEHN  111 (153)
T ss_dssp             ------------------------CTTCCC-------HHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             ------------------------CCCCCC-------HHHHHHHcChHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcC
Confidence                                    235556       9999999999999999998 89999999999999999999999


Q ss_pred             cHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcccc
Q 048145          309 QLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYY  348 (578)
Q Consensus       309 ~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~  348 (578)
                      +.+++++|+     +.|++++.+|..|+||||+|+..|+.
T Consensus       112 ~~~~v~~Ll-----~~ga~~~~~~~~g~t~l~~A~~~~~~  146 (153)
T 1awc_B          112 HQEVVELLI-----KYGADVHTQSKFCKTAFDISIDNGNE  146 (153)
T ss_dssp             CHHHHHHHH-----HTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CHHHHHHHH-----HcCCCccccCCCCCCHHHHHHHcCCH
Confidence            999999999     56778999999999999999999875

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.92  E-value=2.5e-25  Score=199.63  Aligned_cols=145  Identities=19%  Similarity=0.292  Sum_probs=132.0

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN   80 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g   80 (578)
                      |+..|+.+.++.+++.   ....+..+..|.||||+|+. |+.+++++|++. +.+     ++.+|..|.||||+|++.|
T Consensus        12 A~~~g~~~~v~~Ll~~---~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~-g~~-----~~~~~~~g~t~L~~A~~~~   81 (162)
T 1ihb_A           12 AAARGDLEQLTSLLQN---NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLR-GAN-----PDLKDRTGFAVIHDAARAG   81 (162)
T ss_dssp             HHHHTCHHHHHHHTTS---CCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHT-TCC-----TTCCCTTSCCHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHhC---CCCccccCccCccHHHHHHc-CcHHHHHHHHHc-CCC-----CCCCCCCCCCHHHHHHHcC
Confidence            5788999988888866   34457788999999999999 999999999999 999     9999999999999999999


Q ss_pred             CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh------ccccCCccHHHHHHHHHHHHHh
Q 048145           81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ------VNQTAAISILSSKMYIAIWRQV  154 (578)
Q Consensus        81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~------~~~~~g~t~Lh~A~~~~~~~~~  154 (578)
                      +.+++++|+++|+        +++.+|..|.||||+|++.|+.+++++|++.      ..+..|.||||+|+        
T Consensus        82 ~~~~v~~Ll~~g~--------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~--------  145 (162)
T 1ihb_A           82 FLDTLQTLLEFQA--------DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR--------  145 (162)
T ss_dssp             CHHHHHHHHHTTC--------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHH--------
T ss_pred             CHHHHHHHHHcCC--------CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHH--------
Confidence            9999999999999        8999999999999999999999999999997      45678999999999        


Q ss_pred             ccCchHHHHHHHhhhhhHHHHHHHHHHHhcccc
Q 048145          155 IQGCPAIKKIWEKKQIHKKAVALVKMLVEKRID  187 (578)
Q Consensus       155 ~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~  187 (578)
                      ..|+                .+++++|+++|++
T Consensus       146 ~~~~----------------~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          146 LYGR----------------NEVVSLMQANGAG  162 (162)
T ss_dssp             HTTC----------------HHHHHHHHHTC--
T ss_pred             HcCC----------------HHHHHHHHHhCCC
Confidence            7788                8999999999875

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.92  E-value=1.5e-25  Score=205.63  Aligned_cols=169  Identities=14%  Similarity=0.081  Sum_probs=140.5

Q ss_pred             CCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccC-CCCChHHHHHHHcCCH----HHHHHHHhhcCCCCCCCCCCcc
Q 048145           30 GECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTD-DNGNTAVHALATINNV----DVAKTLVEFSKQSNDADKNPLV  104 (578)
Q Consensus        30 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d-~~G~TpLh~Aa~~g~~----~iv~~Ll~~g~~~~~~~~~~~~  104 (578)
                      +.++||.||+.|+.+.++.+++. +       ++.++ ..|+||||+|+..|+.    +++++|+++|+        +++
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~-~-------~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Ga--------dvn   69 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEK-G-------YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGA--------DIK   69 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHH-S-------SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTC--------CSS
T ss_pred             cccHHHHHHHcCCHHHHHHHHhc-C-------cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCC--------CCC
Confidence            46899999999999999999987 4       34555 7899999999999985    59999999999        999


Q ss_pred             cCCCCCCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhc
Q 048145          105 VENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEK  184 (578)
Q Consensus       105 ~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~  184 (578)
                      .+|..|+||||+|+..|+.++.+                                              ..+++++|+++
T Consensus        70 ~~d~~g~TpLh~a~~~~~~~~~~----------------------------------------------~~~iv~~Ll~~  103 (186)
T 3t8k_A           70 SRTKEGTTLFFPLFQGGGNDITG----------------------------------------------TTELCKIFLEK  103 (186)
T ss_dssp             CCCTTCCCTHHHHHHHCTTCHHH----------------------------------------------HHHHHHHHHHT
T ss_pred             CCCCCCCcHHHHHHHcCCcchhh----------------------------------------------HHHHHHHHHHC
Confidence            99999999999999988654321                                              06889999999


Q ss_pred             cccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccc-cccccc
Q 048145          185 RIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDM-TSSMRT  263 (578)
Q Consensus       185 g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~-t~~~~g  263 (578)
                      |++++..                                                             |..|+ |     
T Consensus       104 Gadin~~-------------------------------------------------------------d~~g~tt-----  117 (186)
T 3t8k_A          104 GADITAL-------------------------------------------------------------YKPYKIV-----  117 (186)
T ss_dssp             TCCSSSC-------------------------------------------------------------BGGGTBC-----
T ss_pred             CCCCCcc-------------------------------------------------------------CCCcCch-----
Confidence            9987654                                                             23556 5     


Q ss_pred             hhHHHHHHh-----cCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccC
Q 048145          264 MRILLFAVS-----NGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDN  333 (578)
Q Consensus       264 ~~pLh~Aa~-----~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~  333 (578)
                        |||+|+.     .++.+++++|++..|++++.+|..|+||||+|++.|+.+++++|.     +.....+.+|+
T Consensus       118 --pLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~-----~~~~~~~~~~~  185 (186)
T 3t8k_A          118 --VFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMME-----DYIKKYNLKEN  185 (186)
T ss_dssp             --TTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHH-----HHHHHHTCCC-
T ss_pred             --HHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHH-----HHHHHHhcccC
Confidence              9999998     445789999997689999999999999999999999999999998     33444565554

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.92  E-value=1.2e-24  Score=196.81  Aligned_cols=144  Identities=17%  Similarity=0.231  Sum_probs=132.5

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN   80 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g   80 (578)
                      ||..|+.+.++.+++.   +...+..|..|.||||+|+..|+.+++++|+++ +.+     ++.+|..|.||||+|+..|
T Consensus        21 A~~~g~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~-----~~~~~~~g~t~L~~A~~~~   91 (169)
T 2y1l_E           21 AARAGRDDEVRILMAN---GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKN-GAD-----VNAVDHAGMTPLRLAALFG   91 (169)
T ss_dssp             HHHHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCC-----TTCCCTTSCCHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCC-----CCccCCCCCCHHHHHHHcC
Confidence            6788999988777776   345577889999999999999999999999999 999     9999999999999999999


Q ss_pred             CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhc
Q 048145           81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVI  155 (578)
Q Consensus        81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~  155 (578)
                      +.+++++|+++|+        +++.+|..|.||||+|+..|+.+++++|+++     ..|..|.||||+|+        .
T Consensus        92 ~~~~~~~Ll~~g~--------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~--------~  155 (169)
T 2y1l_E           92 HLEIVEVLLKNGA--------DVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISI--------D  155 (169)
T ss_dssp             CHHHHHHHHHTTC--------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--------H
T ss_pred             CHHHHHHHHHcCC--------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH--------H
Confidence            9999999999999        8999999999999999999999999999998     56789999999999        7


Q ss_pred             cCchHHHHHHHhhhhhHHHHHHHHHHHhcc
Q 048145          156 QGCPAIKKIWEKKQIHKKAVALVKMLVEKR  185 (578)
Q Consensus       156 ~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g  185 (578)
                      .|+                .+++++|++.|
T Consensus       156 ~~~----------------~~~~~~L~~~G  169 (169)
T 2y1l_E          156 NGN----------------EDLAEILQKLN  169 (169)
T ss_dssp             TTC----------------HHHHHHHHTC-
T ss_pred             hCC----------------HHHHHHHHHcC
Confidence            788                89999999875

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.92  E-value=6.3e-25  Score=200.62  Aligned_cols=151  Identities=13%  Similarity=0.119  Sum_probs=139.4

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN   80 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g   80 (578)
                      |+..|+.+.++.+++.  .+...+..+..|.||||+|+..|+.++|++|++. +++     ++.+|..|+||||+|+..|
T Consensus        12 A~~~g~~~~v~~ll~~--~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~-----~~~~~~~g~t~L~~A~~~~   83 (179)
T 3f6q_A           12 QCREGNAVAVRLWLDN--TENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR-GAR-----INVMNRGDDTPLHLAASHG   83 (179)
T ss_dssp             HHHHTCHHHHHHHHHC--TTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCC-----TTCCCTTCCCHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHhc--CcccccccCCCCCCHHHHHHHcCcHHHHHHHHHc-CCC-----CCCcCCCCCCHHHHHHHcC
Confidence            5788999988888887  4556788899999999999999999999999999 999     9999999999999999999


Q ss_pred             CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhc
Q 048145           81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVI  155 (578)
Q Consensus        81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~  155 (578)
                      +.+++++|+++|+        +++.+|..|.||||+|+..|+.+++++|++.     ..|..|.||||+|+        .
T Consensus        84 ~~~~v~~Ll~~g~--------~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~--------~  147 (179)
T 3f6q_A           84 HRDIVQKLLQYKA--------DINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAK--------A  147 (179)
T ss_dssp             CHHHHHHHHHTTC--------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSC--------H
T ss_pred             CHHHHHHHHHcCC--------CCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHH--------H
Confidence            9999999999999        8999999999999999999999999999998     67899999999998        4


Q ss_pred             cCchHHHHHHHhhhhhHHHHHHHHHHHhcccccccc
Q 048145          156 QGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCAT  191 (578)
Q Consensus       156 ~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~  191 (578)
                      .++                .+++++|+++|++++..
T Consensus       148 ~~~----------------~~~~~~L~~~g~~~~~~  167 (179)
T 3f6q_A          148 PLR----------------ELLRERAEKMGQNLNRI  167 (179)
T ss_dssp             HHH----------------HHHHHHHHHTTCCCSCB
T ss_pred             HHH----------------HHHHHHHHHhhcCcccC
Confidence            444                79999999999998766

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.91  E-value=9.3e-25  Score=196.62  Aligned_cols=145  Identities=18%  Similarity=0.180  Sum_probs=131.7

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN   80 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g   80 (578)
                      |+..|+.+.++.+++.  .+...+..+..|.||||+|+..|+.++|++|+++ +.+     ++.+|.+|+||||+|+..|
T Consensus        15 A~~~g~~~~v~~ll~~--~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~-----~~~~~~~g~t~L~~A~~~~   86 (165)
T 3twr_A           15 AAKAGDVETVKKLCTV--QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH-GAD-----VHAKDKGGLVPLHNACSYG   86 (165)
T ss_dssp             HHHHTCHHHHHHHCCT--TTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT-TCC-----TTCCCTTSCCHHHHHHHTT
T ss_pred             HHHhCCHHHHHHHHHc--CCCCccccccCCCCHHHHHHHcChHHHHHHHHhc-CCC-----CCccCCCCCCHHHHHHHcC
Confidence            5788999988888876  4556677788899999999999999999999999 999     9999999999999999999


Q ss_pred             CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhc
Q 048145           81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVI  155 (578)
Q Consensus        81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~  155 (578)
                      +.+++++|+++|+        +++.+|..|.||||+|+.+|+.+++++|++.     ..|.+|.||||+|.        .
T Consensus        87 ~~~~v~~Ll~~g~--------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~--------~  150 (165)
T 3twr_A           87 HYEVAELLVKHGA--------VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK--------D  150 (165)
T ss_dssp             CHHHHHHHHHTTC--------CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSC--------T
T ss_pred             cHHHHHHHHhCCC--------CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHh--------c
Confidence            9999999999999        8999999999999999999999999999998     57899999999986        3


Q ss_pred             cCchHHHHHHHhhhhhHHHHHHHHHHHhccc
Q 048145          156 QGCPAIKKIWEKKQIHKKAVALVKMLVEKRI  186 (578)
Q Consensus       156 ~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~  186 (578)
                       |+                .+++++|+++|+
T Consensus       151 -~~----------------~~i~~~L~~~gA  164 (165)
T 3twr_A          151 -GD----------------TDIQDLLRGDAA  164 (165)
T ss_dssp             -TC----------------HHHHHHHHTC--
T ss_pred             -CC----------------hHHHHHHhhccc
Confidence             66                799999998875

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.91  E-value=2.3e-24  Score=192.10  Aligned_cols=143  Identities=21%  Similarity=0.277  Sum_probs=131.8

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN   80 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g   80 (578)
                      |+..|+.+.++.++++  .+...+..|..|.||||+ +..|+.+++++|++. +.+     ++.+|..|.||||+|+..|
T Consensus         9 A~~~g~~~~v~~ll~~--~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~-g~~-----~~~~~~~g~t~L~~A~~~~   79 (156)
T 1bd8_A            9 AAARGDVQEVRRLLHR--ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQ-GAS-----PNVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHTCHHHHHHHHHT--TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHT-TCC-----TTCCCTTSCCHHHHHHHTT
T ss_pred             HHHhCCHHHHHHHHHh--hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHC-CCC-----CCCcCCCCCCHHHHHHHcC
Confidence            5788999988888877  334557788999999999 999999999999999 999     9999999999999999999


Q ss_pred             CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh----ccccCCccHHHHHHHHHHHHHhcc
Q 048145           81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ----VNQTAAISILSSKMYIAIWRQVIQ  156 (578)
Q Consensus        81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~----~~~~~g~t~Lh~A~~~~~~~~~~~  156 (578)
                      +.+++++|+++|+        +++.+|..|.||||+|+.+|+.+++++|++.    ..|.+|.||||+|+        ..
T Consensus        80 ~~~~v~~Ll~~g~--------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~g~t~l~~A~--------~~  143 (156)
T 1bd8_A           80 FLDTLKVLVEHGA--------DVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELAL--------QR  143 (156)
T ss_dssp             CHHHHHHHHHTTC--------CSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTSCTTCCCTTSCCHHHHHH--------HS
T ss_pred             cHHHHHHHHHcCC--------CCCCcCCCCCcHHHHHHHhChHHHHHHHHhccCCCCcCCCCCCHHHHHH--------Hc
Confidence            9999999999999        8999999999999999999999999999987    57789999999999        77


Q ss_pred             CchHHHHHHHhhhhhHHHHHHHHHHHhc
Q 048145          157 GCPAIKKIWEKKQIHKKAVALVKMLVEK  184 (578)
Q Consensus       157 G~~~~~~~~~~~~~~~~~~~~v~~Ll~~  184 (578)
                      |+                .+++++|+++
T Consensus       144 ~~----------------~~~v~~Ll~~  155 (156)
T 1bd8_A          144 GA----------------QDLVDILQGH  155 (156)
T ss_dssp             CC----------------HHHHHHHHTT
T ss_pred             Cc----------------HHHHHHHHhh
Confidence            88                8999999875

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.91  E-value=2.8e-25  Score=211.37  Aligned_cols=164  Identities=10%  Similarity=0.022  Sum_probs=128.1

Q ss_pred             HHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHH
Q 048145           46 IKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEA  125 (578)
Q Consensus        46 v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~i  125 (578)
                      |+.|+++ +.+  ....+..+.+|.||||+|+..|+.+++++|++.|+        +++.+|..|.||||+|+..|+.++
T Consensus         1 v~~ll~~-~~~--~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~--------~~~~~d~~g~tpLh~A~~~g~~~~   69 (229)
T 2vge_A            1 MRSVLRK-AGS--PRKARRARLNPLVLLLDAALTGELEVVQQAVKEMN--------DPSQPNEEGITALHNAICGANYSI   69 (229)
T ss_dssp             ----------C--CCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSS--------CTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             Ceehhcc-CCC--CccccccccchhHHHHHHHHcCCHHHHHHHHhcCC--------CCCCCCCCCCCHHHHHHHcCCHHH
Confidence            4566776 555  11123445677889999999999999999999999        889999999999999999888655


Q ss_pred             HHHHHHhccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcc
Q 048145          126 LRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLG  205 (578)
Q Consensus       126 v~~Ll~~~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~  205 (578)
                      +++|                                                    +++|++++..              
T Consensus        70 v~~L----------------------------------------------------l~~ga~~n~~--------------   83 (229)
T 2vge_A           70 VDFL----------------------------------------------------ITAGANVNSP--------------   83 (229)
T ss_dssp             HHHH----------------------------------------------------HHTTCCTTCC--------------
T ss_pred             HHHH----------------------------------------------------HHCCCCCCCC--------------
Confidence            5555                                                    4445544322              


Q ss_pred             cCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHH
Q 048145          206 LGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHK  285 (578)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~  285 (578)
                                                                     |..|+|       |||+|+..|+.+++++|++ 
T Consensus        84 -----------------------------------------------d~~g~t-------pLh~A~~~g~~~~v~~Ll~-  108 (229)
T 2vge_A           84 -----------------------------------------------DSHGWT-------PLHCAASCNDTVICMALVQ-  108 (229)
T ss_dssp             -----------------------------------------------CTTCCC-------HHHHHHHTTCHHHHHHHHT-
T ss_pred             -----------------------------------------------CCCCCC-------HHHHHHHcCCHHHHHHHHH-
Confidence                                                           235566       9999999999999999998 


Q ss_pred             CCCcccccc-cCCChHHHHH--HHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcc
Q 048145          286 YPQTLDNVN-EKGQNILHVA--IMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMK  346 (578)
Q Consensus       286 ~~~~i~~~d-~~G~t~Lh~A--~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~  346 (578)
                      .+++++..| .+|+||||+|  +..|+.+++++|+     +.|++++.+|..|.||+|.++...
T Consensus       109 ~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll-----~~ga~~~~~~~~~~~~l~~~~~~~  167 (229)
T 2vge_A          109 HGAAIFATTLSDGATAFEKCDPYREGYADCATYLA-----DVEQSMGLMNSGAVYALWDYSAEF  167 (229)
T ss_dssp             TTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHH-----HHHHHTTTSGGGEEEESSCBCCSS
T ss_pred             cCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHH-----HcCCCcccccCCchHHHHHHhhcc
Confidence            899999987 6999999999  9999999999999     678889999999999999766554

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.91  E-value=2.6e-24  Score=187.04  Aligned_cols=127  Identities=15%  Similarity=0.117  Sum_probs=119.3

Q ss_pred             hhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCC
Q 048145           22 LLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKN  101 (578)
Q Consensus        22 ~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~  101 (578)
                      ..+..+..|.||||+|+..|+.++|++|+++ +.+     ++.+|..|+||||+|+. |+.+++++|+++|+        
T Consensus         4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~-----~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~--------   68 (136)
T 1d9s_A            4 GIHMLGGSSDAGLATAAARGQVETVRQLLEA-GAD-----PNALNRFGRRPIQVMMM-GSAQVAELLLLHGA--------   68 (136)
T ss_dssp             CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHT-TCC-----TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTC--------
T ss_pred             CccCCCCCCccHHHHHHHcCCHHHHHHHHHc-CCC-----cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCC--------
Confidence            3467789999999999999999999999999 899     99999999999999999 99999999999999        


Q ss_pred             CcccCCCC-CCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHH
Q 048145          102 PLVVENKL-GETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAV  175 (578)
Q Consensus       102 ~~~~~n~~-g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~  175 (578)
                      +++.+|.. |.||||+|+..|+.+++++|++.     ..|..|.||||+|+        ..|+                .
T Consensus        69 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~--------~~~~----------------~  124 (136)
T 1d9s_A           69 EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAE--------EQGH----------------R  124 (136)
T ss_dssp             CSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHH--------HHTC----------------H
T ss_pred             CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH--------HcCC----------------H
Confidence            89999999 99999999999999999999998     56789999999999        6677                8


Q ss_pred             HHHHHHHhcccc
Q 048145          176 ALVKMLVEKRID  187 (578)
Q Consensus       176 ~~v~~Ll~~g~~  187 (578)
                      +++++|+++|++
T Consensus       125 ~~~~~Ll~~Gad  136 (136)
T 1d9s_A          125 DIARYLHAATGD  136 (136)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHcCCC
Confidence            999999999875

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.90  E-value=2.2e-24  Score=192.33  Aligned_cols=147  Identities=12%  Similarity=0.117  Sum_probs=104.2

Q ss_pred             hhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHhccccCCccH
Q 048145           62 LMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISI  141 (578)
Q Consensus        62 l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~  141 (578)
                      ....+..|.||||+|++.|+.+++++|+++|+        +++.+|..|.||||+|+ .|+.++                
T Consensus         5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~--------~~~~~~~~g~t~L~~A~-~~~~~~----------------   59 (156)
T 1bi7_B            5 AGSSMEPSADWLATAAARGRVEEVRALLEAGA--------NPNAPNSYGRRPIQVMM-MGSARV----------------   59 (156)
T ss_dssp             -----CCSTTHHHHHHHHTCHHHHHHHHTTTC--------CTTCCCSSSCCTTTSSC-TTCHHH----------------
T ss_pred             ccCCCccchHHHHHHHHcCCHHHHHHHHHcCC--------CCCCCCCCCCCHHHHHH-cCCHHH----------------
Confidence            45667889999999999999999999999998        89999999999999985 666544                


Q ss_pred             HHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchh
Q 048145          142 LSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAG  221 (578)
Q Consensus       142 Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  221 (578)
                                                          +++|+++|++++..                              
T Consensus        60 ------------------------------------v~~Ll~~g~~~~~~------------------------------   73 (156)
T 1bi7_B           60 ------------------------------------AELLLLHGAEPNCA------------------------------   73 (156)
T ss_dssp             ------------------------------------HHHHHTTTCCCCCC------------------------------
T ss_pred             ------------------------------------HHHHHHcCCCCCCc------------------------------
Confidence                                                45555555544322                              


Q ss_pred             hHHHHHHHHhcCCccccccccCcccccccccccccccccccchh-HHHHHHhcCHHHHHHHHHHHCCCcccccccCCChH
Q 048145          222 EWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMR-ILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNI  300 (578)
Q Consensus       222 ~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~-pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~  300 (578)
                                                            +..|.| |||+|+..|+.+++++|++ .+++++.+|..|+||
T Consensus        74 --------------------------------------d~~g~ttpL~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tp  114 (156)
T 1bi7_B           74 --------------------------------------DPATLTRPVHDAAREGFLDTLVVLHR-AGARLDVRDAWGRLP  114 (156)
T ss_dssp             --------------------------------------CTTTCCCHHHHHHHHTCHHHHHHHHH-HTCCSSCCCTTCCCH
T ss_pred             --------------------------------------CCCCCcHHHHHHHHCCCHHHHHHHHH-cCCCCcccCCCCCCH
Confidence                                                  223445 9999999999999999998 688999999999999


Q ss_pred             HHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHH
Q 048145          301 LHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVA  343 (578)
Q Consensus       301 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~  343 (578)
                      ||+|+.+|+.+++++|+     +.|++++.+|..|+||.+-+.
T Consensus       115 l~~A~~~~~~~~v~~Ll-----~~ga~~~~~~~~g~t~~~~~~  152 (156)
T 1bi7_B          115 VDLAEELGHRDVARYLR-----AAAGGTRGSNHARIDAAEGPS  152 (156)
T ss_dssp             HHHHHHHTCHHHHHHHS-----SCC------------------
T ss_pred             HHHHHHhCHHHHHHHHH-----HcCCCCCccCcCcCcccccCC
Confidence            99999999999999999     567789999999999988543

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.90  E-value=4.1e-24  Score=190.51  Aligned_cols=93  Identities=17%  Similarity=0.165  Sum_probs=82.0

Q ss_pred             ccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCc
Q 048145           24 GYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPL  103 (578)
Q Consensus        24 ~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~  103 (578)
                      ...+..|.||||+|+..|+.++|++|+++ +.+     ++.+|..|+||||+|+ .|+.+++++|+++|+        ++
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~-----~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~--------~~   70 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEA-GAN-----PNAPNSYGRRPIQVMM-MGSARVAELLLLHGA--------EP   70 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTT-TCC-----TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTC--------CC
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHc-CCC-----CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCC--------CC
Confidence            45678899999999999999999999999 999     9999999999999985 999999999999999        89


Q ss_pred             ccCCCCCCC-HHHHHHHcCcHHHHHHHHH
Q 048145          104 VVENKLGET-PLYRAASVGKIEALRYFAE  131 (578)
Q Consensus       104 ~~~n~~g~T-pLh~A~~~g~~~iv~~Ll~  131 (578)
                      +.+|..|.| |||+|+..|+.+++++|++
T Consensus        71 ~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~   99 (156)
T 1bi7_B           71 NCADPATLTRPVHDAAREGFLDTLVVLHR   99 (156)
T ss_dssp             CCCCTTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CCcCCCCCcHHHHHHHHCCCHHHHHHHHH
Confidence            999999999 9999999888666655554

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.90  E-value=2.4e-23  Score=180.99  Aligned_cols=126  Identities=13%  Similarity=0.148  Sum_probs=109.4

Q ss_pred             hhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHhccccCCccH
Q 048145           62 LMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISI  141 (578)
Q Consensus        62 l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~  141 (578)
                      ++.+|..|.||||+|++.|+.+++++|+++|+        +++.+|..|.||||+|+. |+.+++++|+           
T Consensus         5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--------~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll-----------   64 (136)
T 1d9s_A            5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGA--------DPNALNRFGRRPIQVMMM-GSAQVAELLL-----------   64 (136)
T ss_dssp             CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTC--------CTTCCCTTCCTTTTTSTT-SCHHHHHHHH-----------
T ss_pred             ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCC--------CcCCcCCCCCCHHHHHHc-CCHHHHHHHH-----------
Confidence            88899999999999999999999999999998        889999999999999998 8866655554           


Q ss_pred             HHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchh
Q 048145          142 LSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAG  221 (578)
Q Consensus       142 Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  221 (578)
                                                               ++|++++..                              
T Consensus        65 -----------------------------------------~~g~~~~~~------------------------------   73 (136)
T 1d9s_A           65 -----------------------------------------LHGAEPNCA------------------------------   73 (136)
T ss_dssp             -----------------------------------------HHTCCSSCC------------------------------
T ss_pred             -----------------------------------------HCCCCCCCc------------------------------
Confidence                                                     444443322                              


Q ss_pred             hHHHHHHHHhcCCccccccccCcccccccccccc-cccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChH
Q 048145          222 EWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTK-DMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNI  300 (578)
Q Consensus       222 ~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~-g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~  300 (578)
                                                     |.. |.|       |||+|+..|+.+++++|++ .+++++.+|..|+||
T Consensus        74 -------------------------------~~~~g~t-------~L~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tp  114 (136)
T 1d9s_A           74 -------------------------------DPATLTR-------PVHDAAREGFLDTLVVLHR-AGARLDVCDAWGRLP  114 (136)
T ss_dssp             -------------------------------BTTTTBC-------HHHHHHHHTCHHHHHHHHH-TCCCCCCCSSSSSCH
T ss_pred             -------------------------------CCCCCCC-------HHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCH
Confidence                                           224 566       9999999999999999998 889999999999999


Q ss_pred             HHHHHHhCcHHHHHHHH
Q 048145          301 LHVAIMYRQLEIFEIIK  317 (578)
Q Consensus       301 Lh~A~~~g~~~iv~~Ll  317 (578)
                      ||+|+++|+.+++++|+
T Consensus       115 l~~A~~~~~~~~~~~Ll  131 (136)
T 1d9s_A          115 VDLAEEQGHRDIARYLH  131 (136)
T ss_dssp             HHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHH
Confidence            99999999999999999

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.89  E-value=5.4e-23  Score=178.72  Aligned_cols=124  Identities=14%  Similarity=0.178  Sum_probs=113.4

Q ss_pred             ccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCc
Q 048145           24 GYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPL  103 (578)
Q Consensus        24 ~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~  103 (578)
                      ......|.||||+|+..|+.++|++|++. +.+     ++.+|..|+||||+|+..|+.+++++|+++|+        ++
T Consensus         8 ~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--------~~   73 (136)
T 2jab_A            8 HHHGSDLGKKLLEAARAGQDDEVRILMAN-GAD-----VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA--------DV   73 (136)
T ss_dssp             ----CHHHHHHHHHHHHTCHHHHHHHHHT-TCC-----TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC--------CT
T ss_pred             CcccccccHHHHHHHHhCCHHHHHHHHHc-CCC-----CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC--------CC
Confidence            34456789999999999999999999999 999     99999999999999999999999999999999        89


Q ss_pred             ccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHH
Q 048145          104 VVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALV  178 (578)
Q Consensus       104 ~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v  178 (578)
                      +.+|..|.||||+|+..|+.+++++|++.     ..|.+|.||||+|+        ..|+                .+++
T Consensus        74 ~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~--------~~~~----------------~~~~  129 (136)
T 2jab_A           74 NAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISI--------GNGN----------------EDLA  129 (136)
T ss_dssp             TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--------HTTC----------------HHHH
T ss_pred             CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHH--------HCCC----------------HHHH
Confidence            99999999999999999999999999998     56789999999999        7787                8999


Q ss_pred             HHHHhcc
Q 048145          179 KMLVEKR  185 (578)
Q Consensus       179 ~~Ll~~g  185 (578)
                      ++|+++|
T Consensus       130 ~~Ll~~G  136 (136)
T 2jab_A          130 EILQKLN  136 (136)
T ss_dssp             HHHHHC-
T ss_pred             HHHHHcC
Confidence            9999875

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.89  E-value=1.2e-22  Score=173.50  Aligned_cols=121  Identities=28%  Similarity=0.392  Sum_probs=114.7

Q ss_pred             CCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCC
Q 048145           29 NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENK  108 (578)
Q Consensus        29 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~  108 (578)
                      +|.||||.|+..|+.+++++|++. +.+     ++.+|..|.||||+|+..|+.+++++|+++|+        +++.+|.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~-~~~-----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~--------~~~~~~~   66 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEA-GAD-----VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA--------DVNAKDK   66 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHH-TCC-----TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC--------CTTCCCT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHc-CCC-----CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCC--------CCcccCC
Confidence            589999999999999999999999 888     99999999999999999999999999999999        8999999


Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHh
Q 048145          109 LGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVE  183 (578)
Q Consensus       109 ~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~  183 (578)
                      .|.||||+|+..|+.+++++|++.     ..+..|.||||+|+        ..|+                .+++++|++
T Consensus        67 ~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~--------~~~~----------------~~~~~~Ll~  122 (126)
T 1n0r_A           67 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA--------RNGH----------------LEVVKLLLE  122 (126)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--------HTTC----------------HHHHHHHHH
T ss_pred             CCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHH--------HcCc----------------HHHHHHHHH
Confidence            999999999999999999999998     56789999999999        7777                899999999


Q ss_pred             cccc
Q 048145          184 KRID  187 (578)
Q Consensus       184 ~g~~  187 (578)
                      +|++
T Consensus       123 ~Gad  126 (126)
T 1n0r_A          123 AGAY  126 (126)
T ss_dssp             HTCC
T ss_pred             cCCC
Confidence            9875

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.88  E-value=5.5e-23  Score=196.99  Aligned_cols=165  Identities=15%  Similarity=0.115  Sum_probs=121.9

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN   80 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g   80 (578)
                      |+..|+.+.+..+++.  +..+ + .+..|.||||.|+..|+.++|+.|++. +++     ++.+|..|+||||+||..|
T Consensus        12 a~~~~~~~~~~~ll~~--g~~~-~-~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~-----~~~~d~~g~t~L~~A~~~g   81 (239)
T 1ycs_B           12 GKRTNLRKTGSERIAH--GMRV-K-FNPLPLALLLDSSLEGEFDLVQRIIYE-VDD-----PSLPNDEGITALHNAVCAG   81 (239)
T ss_dssp             -----------------------------CHHHHHHHHHHTCHHHHHHHTST-TSS-----CCCCCTTSCCHHHHHHHHT
T ss_pred             hhhhhhHHHHHHHhcc--CCCc-c-cCchhhHHHHHHHHcCCHHHHHHHHHc-CCC-----CCCcCCCCCCHHHHHHHcC
Confidence            5677888877777776  2222 2 357899999999999999999999999 889     9999999999999999999


Q ss_pred             CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCc-cHHHHH--HHHHHHH
Q 048145           81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAI-SILSSK--MYIAIWR  152 (578)
Q Consensus        81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~-t~Lh~A--~~~~~~~  152 (578)
                      +.+++++|+++|+        +++.+|..|.||||+|+.+|+.+++++|+++     ..+..|. ||||+|  +      
T Consensus        82 ~~~~v~~Ll~~ga--------~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~------  147 (239)
T 1ycs_B           82 HTEIVKFLVQFGV--------NVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEM------  147 (239)
T ss_dssp             CHHHHHHHHHHTC--------CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSS------
T ss_pred             CHHHHHHHHHcCC--------CCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHh------
Confidence            9999999999999        8999999999999999999999999999998     3455555 999999  5      


Q ss_pred             HhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccC------CCCCCchhhcccC
Q 048145          153 QVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEK------PTPGVTEISLGLG  207 (578)
Q Consensus       153 ~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~------~~~~~~~l~~~~~  207 (578)
                        ..|+                .+++++|+++|++++..+.+      +..+.++.+++..
T Consensus       148 --~~g~----------------~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~  190 (239)
T 1ycs_B          148 --EEGY----------------TQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMK  190 (239)
T ss_dssp             --STTC----------------CCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBC
T ss_pred             --hhcc----------------HHHHHHHHHhhhcccccccceEEEEeccCCCCCCccccc
Confidence              6777                89999999999988765332      2334455555443

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.88  E-value=1.8e-23  Score=191.69  Aligned_cols=146  Identities=10%  Similarity=0.056  Sum_probs=127.1

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCC-CCCCcHHHHHHhcCCh----HHHHHHHccCCCchhhhhhhccCCCCChHHHH
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRT-FNGECAIHVAAAMEDP----ELIKKFLGRLPVEKRLEALMQTDDNGNTAVHA   75 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~-~~g~T~Lh~Aa~~g~~----~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~   75 (578)
                      ||..|+.+.++.++.. ..    +..+ ..|+||||+|+..|+.    +++++|+++ |++     ++.+|.+|+||||+
T Consensus        13 Aa~~g~~~~~~~l~~~-~~----~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~-Gad-----vn~~d~~g~TpLh~   81 (186)
T 3t8k_A           13 AAMLGTYEDFLELFEK-GY----EDKESVLKSNILYDVLRNNNDEARYKISMFLINK-GAD-----IKSRTKEGTTLFFP   81 (186)
T ss_dssp             HHHHSCHHHHHHHHHH-SS----SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHT-TCC-----SSCCCTTCCCTHHH
T ss_pred             HHHcCCHHHHHHHHhc-Cc----ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHC-CCC-----CCCCCCCCCcHHHH
Confidence            5789999999999887 21    2333 6799999999999985    599999999 999     99999999999999


Q ss_pred             HHHcCC------HHHHHHHHhhcCCCCCCCCCCcccCCCCCC-CHHHHHHHcC-----cHHHHHHHHH-h-----ccccC
Q 048145           76 LATINN------VDVAKTLVEFSKQSNDADKNPLVVENKLGE-TPLYRAASVG-----KIEALRYFAE-Q-----VNQTA  137 (578)
Q Consensus        76 Aa~~g~------~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~-TpLh~A~~~g-----~~~iv~~Ll~-~-----~~~~~  137 (578)
                      |+..|+      .+++++|+++|+        +++.+|..|. ||||+|+..+     +.+++++|++ .     ..|..
T Consensus        82 a~~~~~~~~~~~~~iv~~Ll~~Ga--------din~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~  153 (186)
T 3t8k_A           82 LFQGGGNDITGTTELCKIFLEKGA--------DITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKW  153 (186)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTC--------CSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTT
T ss_pred             HHHcCCcchhhHHHHHHHHHHCCC--------CCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCC
Confidence            999987      689999999999        9999999999 9999999954     4579999999 5     68899


Q ss_pred             CccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhcccccc
Q 048145          138 AISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDC  189 (578)
Q Consensus       138 g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~  189 (578)
                      |.||||+|+        ..|+                .+++++|.+...+.+
T Consensus       154 G~TpL~~A~--------~~~~----------------~~~v~~L~~~~~~~~  181 (186)
T 3t8k_A          154 GLTALEFVK--------RCQK----------------PIALKMMEDYIKKYN  181 (186)
T ss_dssp             SCCHHHHHH--------TTTC----------------HHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHH--------HcCC----------------HHHHHHHHHHHHHHh
Confidence            999999999        7788                788888887655443

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.87  E-value=9.6e-22  Score=170.76  Aligned_cols=124  Identities=19%  Similarity=0.249  Sum_probs=105.0

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHH
Q 048145           65 TDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSS  144 (578)
Q Consensus        65 ~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~  144 (578)
                      ....|.||||+||..|+.+++++|+++|+        +++.+|..|.||||+|+.+|+.+++++|+              
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~--------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll--------------   67 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGA--------DVNAKDEYGLTPLYLATAHGHLEIVEVLL--------------   67 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTC--------CTTCCCTTSCCHHHHHHHHTCHHHHHHHH--------------
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCC--------CCCCcCCCCCCHHHHHHHcCCHHHHHHHH--------------
Confidence            45678999999999999999999999999        88999999999999999988866555554              


Q ss_pred             HHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHH
Q 048145          145 KMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWV  224 (578)
Q Consensus       145 A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  224 (578)
                                                            ++|++++..                                 
T Consensus        68 --------------------------------------~~g~~~~~~---------------------------------   76 (136)
T 2jab_A           68 --------------------------------------KNGADVNAV---------------------------------   76 (136)
T ss_dssp             --------------------------------------HTTCCTTCC---------------------------------
T ss_pred             --------------------------------------HcCCCCCcC---------------------------------
Confidence                                                  444443322                                 


Q ss_pred             HHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHH
Q 048145          225 ELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVA  304 (578)
Q Consensus       225 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A  304 (578)
                                                  |..|.|       |||+|+..|+.+++++|++ .+++++..|.+|+||||+|
T Consensus        77 ----------------------------d~~g~t-------~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~tpl~~A  120 (136)
T 2jab_A           77 ----------------------------DAIGFT-------PLHLAAFIGHLEIAEVLLK-HGADVNAQDKFGKTAFDIS  120 (136)
T ss_dssp             ----------------------------CTTCCC-------HHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHH
T ss_pred             ----------------------------CCCCCC-------HHHHHHHcCCHHHHHHHHH-cCCCCcCcCCCCCCHHHHH
Confidence                                        235556       9999999999999999998 7899999999999999999


Q ss_pred             HHhCcHHHHHHHH
Q 048145          305 IMYRQLEIFEIIK  317 (578)
Q Consensus       305 ~~~g~~~iv~~Ll  317 (578)
                      +++|+.+++++|+
T Consensus       121 ~~~~~~~~~~~Ll  133 (136)
T 2jab_A          121 IGNGNEDLAEILQ  133 (136)
T ss_dssp             HHTTCHHHHHHHH
T ss_pred             HHCCCHHHHHHHH
Confidence            9999999999998

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.87  E-value=1.4e-22  Score=176.19  Aligned_cols=108  Identities=16%  Similarity=0.243  Sum_probs=103.8

Q ss_pred             cCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcc
Q 048145           25 YRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLV  104 (578)
Q Consensus        25 ~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~  104 (578)
                      ..|.+|.||||+|+..|+.+++++|++. +.+     ++.+|..|+||||+|+..|+.+++++|+++|+        +++
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~-----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~--------~~~   70 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQN-GSD-----PNVKDHAGWTPLHEACNHGHLKVVELLLQHKA--------LVN   70 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCC-----SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC--------CTT
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCC-----CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC--------ccc
Confidence            5688999999999999999999999998 899     99999999999999999999999999999999        899


Q ss_pred             cCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHH
Q 048145          105 VENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKM  146 (578)
Q Consensus       105 ~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~  146 (578)
                      .+|..|.||||+|+..|+.+++++|++.     ..|..|.||||+|+
T Consensus        71 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~  117 (137)
T 3c5r_A           71 TTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTD  117 (137)
T ss_dssp             CCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHh
Confidence            9999999999999999999999999998     67899999999998

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.87  E-value=4e-22  Score=182.65  Aligned_cols=105  Identities=22%  Similarity=0.212  Sum_probs=99.4

Q ss_pred             CCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccC
Q 048145           27 TFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVE  106 (578)
Q Consensus        27 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~  106 (578)
                      +.+|.||||+|+..|+.++++.|++  +.+     ++.+|..|+||||+|+..|+.+++++|+++|+        +++.+
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~-----~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga--------~~~~~  105 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE--DRD-----VDAVDENGRTALLFVAGLGSDKCVRLLAEAGA--------DLDHR  105 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT--TSC-----TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC--------CTTCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh--cCC-----CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC--------CCCcC
Confidence            5678999999999999999999998  778     99999999999999999999999999999999        88888


Q ss_pred             C-CCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHH
Q 048145          107 N-KLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKM  146 (578)
Q Consensus       107 n-~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~  146 (578)
                      + ..|.||||+|+..|+.+++++|+++     ..|.+|.||||+|+
T Consensus       106 ~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~  151 (183)
T 3deo_A          106 DMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR  151 (183)
T ss_dssp             CSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHH
Confidence            8 8899999999999999999999998     57889999999998

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.86  E-value=3.3e-21  Score=164.53  Aligned_cols=121  Identities=27%  Similarity=0.387  Sum_probs=103.2

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHHH
Q 048145           68 NGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMY  147 (578)
Q Consensus        68 ~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~  147 (578)
                      +|+||||+|++.|+.+++++|+++|+        +++.+|..|.||||+|+..|+.+++++|++                
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~--------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~----------------   56 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGA--------DVNAKDKNGRTPLHLAARNGHLEVVKLLLE----------------   56 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTC--------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHH----------------
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCC--------CCCCcCCCCCcHHHHHHHcCcHHHHHHHHH----------------
Confidence            58999999999999999999999998        888999999999999999888666655544                


Q ss_pred             HHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHH
Q 048145          148 IAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELM  227 (578)
Q Consensus       148 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  227 (578)
                                                          +|.+++..                                    
T Consensus        57 ------------------------------------~g~~~~~~------------------------------------   64 (126)
T 1n0r_A           57 ------------------------------------AGADVNAK------------------------------------   64 (126)
T ss_dssp             ------------------------------------TTCCTTCC------------------------------------
T ss_pred             ------------------------------------cCCCCccc------------------------------------
Confidence                                                44433221                                    


Q ss_pred             HHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHh
Q 048145          228 IQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMY  307 (578)
Q Consensus       228 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~  307 (578)
                                               |..|.|       |||+|+..|+.+++++|++ .+.+++.+|.+|+||||+|+..
T Consensus        65 -------------------------~~~g~t-------~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~A~~~  111 (126)
T 1n0r_A           65 -------------------------DKNGRT-------PLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARN  111 (126)
T ss_dssp             -------------------------CTTSCC-------HHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHT
T ss_pred             -------------------------CCCCCc-------HHHHHHHcChHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHc
Confidence                                     234555       9999999999999999998 7889999999999999999999


Q ss_pred             CcHHHHHHHH
Q 048145          308 RQLEIFEIIK  317 (578)
Q Consensus       308 g~~~iv~~Ll  317 (578)
                      |+.+++++|+
T Consensus       112 ~~~~~~~~Ll  121 (126)
T 1n0r_A          112 GHLEVVKLLL  121 (126)
T ss_dssp             TCHHHHHHHH
T ss_pred             CcHHHHHHHH
Confidence            9999999999

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.86  E-value=2.1e-21  Score=192.17  Aligned_cols=151  Identities=13%  Similarity=0.001  Sum_probs=113.8

Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHc---CcHHHHHHHHHhccccCCcc
Q 048145           64 QTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASV---GKIEALRYFAEQVNQTAAIS  140 (578)
Q Consensus        64 ~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~---g~~~iv~~Ll~~~~~~~g~t  140 (578)
                      .+...+.++||.|+..|+.+.++.|++.|++.+...  .....+..|.||||+|+..   |+.+++++|++.        
T Consensus       146 ~~~~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~--~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~--------  215 (301)
T 2b0o_E          146 RRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPL--PGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN--------  215 (301)
T ss_dssp             CCCC-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCE--ECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH--------
T ss_pred             cccCchHHHHhhhhhccCHHHHHHHHhcCCcccccC--CCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc--------
Confidence            345567899999999999999999999998754221  0012577899999999997   889988888763        


Q ss_pred             HHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccch
Q 048145          141 ILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSA  220 (578)
Q Consensus       141 ~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  220 (578)
                                                                  |++++                               
T Consensus       216 --------------------------------------------gadvn-------------------------------  220 (301)
T 2b0o_E          216 --------------------------------------------GGHLD-------------------------------  220 (301)
T ss_dssp             --------------------------------------------SSCTT-------------------------------
T ss_pred             --------------------------------------------CCCCC-------------------------------
Confidence                                                        22222                               


Q ss_pred             hhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChH
Q 048145          221 GEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNI  300 (578)
Q Consensus       221 ~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~  300 (578)
                                                    ..|..|+|       |||+|+..|+.+++++|++ .|++++.+|.+|+||
T Consensus       221 ------------------------------~~d~~G~T-------pLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~G~Tp  262 (301)
T 2b0o_E          221 ------------------------------AKAADGNT-------ALHYAALYNQPDCLKLLLK-GRALVGTVNEAGETA  262 (301)
T ss_dssp             ------------------------------CCCTTCCC-------HHHHHHHTTCHHHHHHHHH-TTCCCSCCCTTSCCH
T ss_pred             ------------------------------CCCCCCCC-------HHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCH
Confidence                                          12335666       9999999999999999998 899999999999999


Q ss_pred             HHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcccc
Q 048145          301 LHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYY  348 (578)
Q Consensus       301 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~  348 (578)
                      ||+|+..|+.+++++|+     +.+++      .|+||||+|++.|+.
T Consensus       263 L~~A~~~~~~~iv~~Ll-----~~ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          263 LDIARKKHHKECEELLE-----QAQAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHHHHTCHHHHHHHH-----HHHHH------TTSSCCC--------
T ss_pred             HHHHHHcCCHHHHHHHH-----HhcCC------CCCChhHHHHhcCCc
Confidence            99999999999999999     34433      589999999998864

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.86  E-value=1.2e-21  Score=188.22  Aligned_cols=105  Identities=22%  Similarity=0.212  Sum_probs=96.8

Q ss_pred             CCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccC
Q 048145           27 TFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVE  106 (578)
Q Consensus        27 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~  106 (578)
                      +.+|.||||+|++.|+.++|+.|++  +.+     ++.+|..|+||||+||..|+.++|++|+++|+        +++.+
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~-----~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga--------~~~~~  106 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE--DRD-----VDAVDENGRTALLFVAGLGSDKCVRLLAEAGA--------DLDHR  106 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT--TCC-----TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC--------CTTCC
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc--CCC-----CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC--------CCCcC
Confidence            4578999999999999999999998  778     99999999999999999999999999999999        88888


Q ss_pred             C-CCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHH
Q 048145          107 N-KLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKM  146 (578)
Q Consensus       107 n-~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~  146 (578)
                      + ..|.||||+|+.+|+.+++++|+++     ..|..|.||||+|+
T Consensus       107 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~  152 (244)
T 3ui2_A          107 DMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR  152 (244)
T ss_dssp             CSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            7 7899999999999999999999988     56788999999988

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.85  E-value=1.5e-21  Score=166.35  Aligned_cols=107  Identities=14%  Similarity=0.194  Sum_probs=99.6

Q ss_pred             CCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCccc
Q 048145           26 RTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVV  105 (578)
Q Consensus        26 ~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~  105 (578)
                      .+..|+||||.|+..|+.++++.|++. +.+     ++.+|..|+||||+|+..|+.+++++|+++|+        +++.
T Consensus         3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~-~~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--------~~~~   68 (123)
T 3aaa_C            3 LGSMCDKEFMWALKNGDLDEVKDYVAK-GED-----VNRTLEGGRKPLHYAADCGQLEILEFLLLKGA--------DINA   68 (123)
T ss_dssp             ----CHHHHHHHHHTTCHHHHHHHHHT-TCC-----TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTC--------CTTC
T ss_pred             cccccchHHHHHHHcCCHHHHHHHHHc-CCC-----cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCC--------CCCc
Confidence            456889999999999999999999998 888     99999999999999999999999999999999        8999


Q ss_pred             CCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHH
Q 048145          106 ENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKM  146 (578)
Q Consensus       106 ~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~  146 (578)
                      +|..|.||||+|+..|+.+++++|++.     ..|.+|.||||+|.
T Consensus        69 ~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           69 PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD  114 (123)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC
Confidence            999999999999999999999999998     67899999999997

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.85  E-value=9.3e-22  Score=171.05  Aligned_cols=125  Identities=18%  Similarity=0.198  Sum_probs=100.7

Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHhccccCCccHHH
Q 048145           64 QTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILS  143 (578)
Q Consensus        64 ~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh  143 (578)
                      .+|.+|+||||+|+..|+.+++++|++.|+        +++.+|..|.||||+|+..|+.+++++|+             
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~--------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll-------------   63 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGS--------DPNVKDHAGWTPLHEACNHGHLKVVELLL-------------   63 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTC--------CSCCCCTTSCCHHHHHHHTTCHHHHHHHH-------------
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCC--------CCCcCCCCCCCHHHHHHHcCCHHHHHHHH-------------
Confidence            678899999999999999999999999988        88888999999999999888766555554             


Q ss_pred             HHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhH
Q 048145          144 SKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEW  223 (578)
Q Consensus       144 ~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  223 (578)
                                                             ++|++++..                                
T Consensus        64 ---------------------------------------~~g~~~~~~--------------------------------   72 (137)
T 3c5r_A           64 ---------------------------------------QHKALVNTT--------------------------------   72 (137)
T ss_dssp             ---------------------------------------HTTCCTTCC--------------------------------
T ss_pred             ---------------------------------------HcCCcccCc--------------------------------
Confidence                                                   334433221                                


Q ss_pred             HHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHH
Q 048145          224 VELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHV  303 (578)
Q Consensus       224 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~  303 (578)
                                                   |..|.|       |||+|+..|+.+++++|++ .|++++.+|.+|+||||+
T Consensus        73 -----------------------------~~~g~t-------~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~  115 (137)
T 3c5r_A           73 -----------------------------GYQNDS-------PLHDAAKNGHVDIVKLLLS-YGASRNAVNIFGLRPVDY  115 (137)
T ss_dssp             -----------------------------CGGGCC-------HHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCGGGG
T ss_pred             -----------------------------CCCCCC-------HHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHH
Confidence                                         234555       9999999999999999997 788899999999999999


Q ss_pred             HHHhCcHHHHHHHH
Q 048145          304 AIMYRQLEIFEIIK  317 (578)
Q Consensus       304 A~~~g~~~iv~~Ll  317 (578)
                      |+..+..+++++|.
T Consensus       116 A~~~~~~~~l~~l~  129 (137)
T 3c5r_A          116 TDDESMKSLLLLPE  129 (137)
T ss_dssp             CCCHHHHHHHSCC-
T ss_pred             HhhccHHHHHhhcc
Confidence            98888888887765

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.85  E-value=1.3e-22  Score=194.96  Aligned_cols=162  Identities=14%  Similarity=0.057  Sum_probs=135.5

Q ss_pred             CCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCC
Q 048145           28 FNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVEN  107 (578)
Q Consensus        28 ~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n  107 (578)
                      ..+.+++.+++..|+.+.+..+... +.        ..+.+|+||||+||+.|+.++++.|++ |+        +++.+|
T Consensus        13 ~~~~~~~l~~~~~g~~~~~~~~~~~-~~--------~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~--------~~~~~d   74 (244)
T 3ui2_A           13 GEGAMEYLIEWKDGHSPSWVPSSYI-AA--------DVVSEYETPWWTAARKADEQALSQLLE-DR--------DVDAVD   74 (244)
T ss_dssp             TTTEEEEEEEESSCCCCEEEEGGGS-CH--------HHHHHHHHHHHHHHTTTCHHHHHHTTT-TC--------CTTCBC
T ss_pred             CCCccHHHHHHHcCCCccccccccc-cc--------ccccCCCCHHHHHHHcCCHHHHHHHHc-CC--------CCCCcC
Confidence            4577888888888887766554443 32        345679999999999999999999999 87        899999


Q ss_pred             CCCCCHHHHHHHcCcHHHHHHHHHh-----ccc-cCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHH
Q 048145          108 KLGETPLYRAASVGKIEALRYFAEQ-----VNQ-TAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKML  181 (578)
Q Consensus       108 ~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~-~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~L  181 (578)
                      ..|.||||+|+.+|+.+++++|++.     ..+ ..|.||||+|+        ..|+                .+++++|
T Consensus        75 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~--------~~g~----------------~~~v~~L  130 (244)
T 3ui2_A           75 ENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA--------GYVR----------------PEVVEAL  130 (244)
T ss_dssp             TTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHH--------HTTC----------------HHHHHHH
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH--------HcCC----------------HHHHHHH
Confidence            9999999999999999999999998     344 77999999999        7788                8999999


Q ss_pred             HhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccc
Q 048145          182 VEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSM  261 (578)
Q Consensus       182 l~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~  261 (578)
                      +++|++++..                                                             |..|.|   
T Consensus       131 l~~ga~~~~~-------------------------------------------------------------d~~g~t---  146 (244)
T 3ui2_A          131 VELGADIEVE-------------------------------------------------------------DERGLT---  146 (244)
T ss_dssp             HHTTCCTTCC-------------------------------------------------------------CTTCCC---
T ss_pred             HHCCCCCCCC-------------------------------------------------------------CCCCCc---
Confidence            9998876543                                                             235666   


Q ss_pred             cchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHH
Q 048145          262 RTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIK  317 (578)
Q Consensus       262 ~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll  317 (578)
                          |||+|+..+                  .+..+.||||+|+..|+.+++++|+
T Consensus       147 ----~l~~A~~~~------------------~~~~~~~~l~~a~~~g~~~iv~~L~  180 (244)
T 3ui2_A          147 ----ALELAREIL------------------KTTPKGNPMQFGRRIGLEKVINVLE  180 (244)
T ss_dssp             ----HHHHHHHHH------------------TTCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHH------------------hccCCCCHHHHHHHcChHHHHHHHH
Confidence                999998522                  2367899999999999999999998

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.84  E-value=3.7e-22  Score=182.90  Aligned_cols=134  Identities=16%  Similarity=0.119  Sum_probs=113.4

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccc-cCC
Q 048145           65 TDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQ-TAA  138 (578)
Q Consensus        65 ~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~-~~g  138 (578)
                      .|..|+||||+|++.|+.++++.|++ |.        +++.+|..|.||||+|+.+|+.+++++|++.     ..+ .+|
T Consensus        40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~--------~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g  110 (183)
T 3deo_A           40 VVSEYETPWWTAARKADEQALSQLLE-DR--------DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGG  110 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTT-TS--------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSS
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh-cC--------CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCC
Confidence            46689999999999999999999999 77        8999999999999999999999999999998     344 789


Q ss_pred             ccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCcccccccc
Q 048145          139 ISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDV  218 (578)
Q Consensus       139 ~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  218 (578)
                      .||||+|+        ..|+                .+++++|+++|++++..                           
T Consensus       111 ~tpL~~A~--------~~~~----------------~~~v~~Ll~~ga~~~~~---------------------------  139 (183)
T 3deo_A          111 LTALHMAA--------GYVR----------------PEVVEALVELGADIEVE---------------------------  139 (183)
T ss_dssp             CCHHHHHH--------HTTC----------------HHHHHHHHHHTCCTTCC---------------------------
T ss_pred             CCHHHHHH--------hcCc----------------HHHHHHHHHcCCCCcCC---------------------------
Confidence            99999999        7777                89999999988876543                           


Q ss_pred             chhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCC
Q 048145          219 SAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQ  298 (578)
Q Consensus       219 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~  298 (578)
                                                        |..|+|       |||+|++.++.                  ..+.
T Consensus       140 ----------------------------------d~~g~t-------pl~~A~~~~~~------------------~~~~  160 (183)
T 3deo_A          140 ----------------------------------DERGLT-------ALELAREILKT------------------TPKG  160 (183)
T ss_dssp             ----------------------------------CTTSCC-------HHHHHHHHHHT------------------CCCC
T ss_pred             ----------------------------------CCCCCC-------HHHHHHHhccC------------------cccc
Confidence                                              235556       99988865432                  4567


Q ss_pred             hHHHHHHHhCcHHHHHHHH
Q 048145          299 NILHVAIMYRQLEIFEIIK  317 (578)
Q Consensus       299 t~Lh~A~~~g~~~iv~~Ll  317 (578)
                      ++|++|++.|+.+++++|.
T Consensus       161 ~~l~~a~~~~~~~i~~~L~  179 (183)
T 3deo_A          161 NPMQFGRRIGLEKVINVLE  179 (183)
T ss_dssp             SHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHcCHHHHHHHHH
Confidence            8999999999999998886

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.84  E-value=1.8e-21  Score=184.14  Aligned_cols=130  Identities=18%  Similarity=0.182  Sum_probs=110.1

Q ss_pred             ccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhh-cCCCCCCCCCC
Q 048145           24 GYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEF-SKQSNDADKNP  102 (578)
Q Consensus        24 ~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~-g~~~~~~~~~~  102 (578)
                      +..+..|.||||+||..|+.++|+.|++. +.+     ++.+|..|+||||+||..|+.+++++|++. |+        +
T Consensus        67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~--------~  132 (222)
T 3ehr_A           67 AEQAESIDNPLHEAAKRGNLSWLRECLDN-RVG-----VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNI--------E  132 (222)
T ss_dssp             HHHEEEESCHHHHHHHHTCHHHHHHHHHT-TCC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTC--------C
T ss_pred             cccccccccccccccccCcHHHHHHHHhC-CCC-----ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCC--------C
Confidence            44566789999999999999999999998 899     999999999999999999999999999999 77        8


Q ss_pred             cccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHH
Q 048145          103 LVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVAL  177 (578)
Q Consensus       103 ~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~  177 (578)
                      ++.+|..|.||||+|+..|+.+++++|++.     ..|.+|.||||+|+        ..|+                .++
T Consensus       133 ~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~--------~~~~----------------~~~  188 (222)
T 3ehr_A          133 LNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMAT--------NAAC----------------ASL  188 (222)
T ss_dssp             CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCC--------SHHH----------------HHH
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhc--------chhH----------------HHH
Confidence            999999999999999999999999999998     67899999999999        5555                899


Q ss_pred             HHHHHhcccccccc
Q 048145          178 VKMLVEKRIDDCAT  191 (578)
Q Consensus       178 v~~Ll~~g~~~~~~  191 (578)
                      ++.|++.|+.....
T Consensus       189 l~~l~~~~~~~~~~  202 (222)
T 3ehr_A          189 LKKKQGTDAVRTLS  202 (222)
T ss_dssp             HC------------
T ss_pred             HHHHhccchhhhcc
Confidence            99999988876544

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.83  E-value=1.6e-20  Score=151.36  Aligned_cols=90  Identities=31%  Similarity=0.451  Sum_probs=85.7

Q ss_pred             CCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCC
Q 048145           29 NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENK  108 (578)
Q Consensus        29 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~  108 (578)
                      +|+||||+|+..|+.+++++|++. +++     ++.+|..|+||||+|+..|+.+++++|+++|+        +++.+|.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~-g~~-----~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga--------~~~~~d~   66 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEA-GAD-----VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA--------DVNAKDK   66 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHT-TCC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC--------CTTCCCT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHc-CCC-----CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCC--------CCCccCC
Confidence            489999999999999999999998 999     99999999999999999999999999999999        8999999


Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHHh
Q 048145          109 LGETPLYRAASVGKIEALRYFAEQ  132 (578)
Q Consensus       109 ~g~TpLh~A~~~g~~~iv~~Ll~~  132 (578)
                      .|.||||+|+..|+.+++++|++.
T Consensus        67 ~g~t~l~~A~~~~~~~~~~~Ll~~   90 (93)
T 1n0q_A           67 NGRTPLHLAARNGHLEVVKLLLEA   90 (93)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHc
Confidence            999999999999999999999974

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.83  E-value=3.7e-21  Score=182.05  Aligned_cols=178  Identities=13%  Similarity=0.064  Sum_probs=125.8

Q ss_pred             ccCCCCCCcHHHHHHhcCChHHHHHHHccC-------CCch--hhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCC
Q 048145           24 GYRTFNGECAIHVAAAMEDPELIKKFLGRL-------PVEK--RLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQ   94 (578)
Q Consensus        24 ~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~-------~~~~--~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~   94 (578)
                      ...+..+.++.+++.+.|+...+..+.+..       +..+  ....++.+|.+|.||||+||..|+.++++.|++.|+ 
T Consensus        19 al~d~~~~~~~el~~~~Gd~~~v~~~~~~~w~~~~~~g~~gl~p~~~v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-   97 (222)
T 3ehr_A           19 ALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRV-   97 (222)
T ss_dssp             ESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEETTEEEEEEHHHHHHHEEEESCHHHHHHHHTCHHHHHHHHHTTC-
T ss_pred             EeCCcCCCCCCcccccCCCEEEEeccccchhHhcccCCcceeechhhccccccccccccccccccCcHHHHHHHHhCCC-
Confidence            345667788888888888875543332210       0000  123456677889999999999999999999999999 


Q ss_pred             CCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHH
Q 048145           95 SNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKA  174 (578)
Q Consensus        95 ~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~  174 (578)
                             +++.+|..|.||||+|+.+|+.+++++|+                                            
T Consensus        98 -------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll--------------------------------------------  126 (222)
T 3ehr_A           98 -------GVNGLDKAGSTALYWACHGGHKDIVEMLF--------------------------------------------  126 (222)
T ss_dssp             -------CTTCCCTTSCCHHHHHHHTTCHHHHHHHT--------------------------------------------
T ss_pred             -------CccccCCCCCCHHHHHHHcCCHHHHHHHH--------------------------------------------
Confidence                   89999999999999999998866665554                                            


Q ss_pred             HHHHHHHHhc-cccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccc
Q 048145          175 VALVKMLVEK-RIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDT  253 (578)
Q Consensus       175 ~~~v~~Ll~~-g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~  253 (578)
                              ++ |++++.                                                             .|
T Consensus       127 --------~~~g~~~~~-------------------------------------------------------------~d  137 (222)
T 3ehr_A          127 --------TQPNIELNQ-------------------------------------------------------------QN  137 (222)
T ss_dssp             --------TSTTCCCCC-------------------------------------------------------------CC
T ss_pred             --------cCCCCCccc-------------------------------------------------------------cC
Confidence                    33 333322                                                             23


Q ss_pred             cccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccC
Q 048145          254 TKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDN  333 (578)
Q Consensus       254 ~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~  333 (578)
                      ..|+|       |||+|+..|+.+++++|++ .|++++.+|.+|+||||+|+..++.++++.|+     ..+++.+.+|.
T Consensus       138 ~~g~t-------pL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~-----~~~~~~~~~~~  204 (222)
T 3ehr_A          138 KLGDT-------ALHAAAWKGYADIVQLLLA-KGARTDLRNIEKKLAFDMATNAACASLLKKKQ-----GTDAVRTLSNA  204 (222)
T ss_dssp             TTSCC-------HHHHHHHHTCHHHHHHHHH-HTCCSCCCCTTSCCHHHHCCSHHHHHHHC-------------------
T ss_pred             CCCCC-------HHHHHHHcCCHHHHHHHHH-cCCCCccccCCCCCHHHHhcchhHHHHHHHHh-----ccchhhhccch
Confidence            35566       9999999999999999998 68999999999999999999999999999998     34444555554


Q ss_pred             CC
Q 048145          334 EG  335 (578)
Q Consensus       334 ~G  335 (578)
                      +|
T Consensus       205 ~~  206 (222)
T 3ehr_A          205 ED  206 (222)
T ss_dssp             --
T ss_pred             hh
Confidence            43

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.83  E-value=1e-20  Score=187.22  Aligned_cols=129  Identities=21%  Similarity=0.151  Sum_probs=113.1

Q ss_pred             CcccCChHHHHHHHhcCCchhhhcc-----CCCCCCcHHHHHHhc---CChHHHHHHHccCCCchhhhhhhccCCCCChH
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGY-----RTFNGECAIHVAAAM---EDPELIKKFLGRLPVEKRLEALMQTDDNGNTA   72 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~-----~~~~g~T~Lh~Aa~~---g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~Tp   72 (578)
                      |+..|+.+.+..++..  ...+...     .+..|.||||+|+..   |+.++|++|+++ +++     ++.+|.+|+||
T Consensus       158 A~~~g~~~~v~~ll~~--g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gad-----vn~~d~~G~Tp  229 (301)
T 2b0o_E          158 AICNRDLLSVLEAFAN--GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGH-----LDAKAADGNTA  229 (301)
T ss_dssp             HHHTTCHHHHHHHHHT--TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH-SSC-----TTCCCTTCCCH
T ss_pred             hhhccCHHHHHHHHhc--CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc-CCC-----CCCCCCCCCCH
Confidence            5678999999999877  3333221     688999999999997   899999999999 999     99999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHH
Q 048145           73 VHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKM  146 (578)
Q Consensus        73 Lh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~  146 (578)
                      ||+|+..|+.+++++|+++|+        +++.+|..|.||||+|+..|+.+++++|++...+ .|.||||+|+
T Consensus       230 Lh~A~~~g~~~~v~~Ll~~ga--------d~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-~g~tpLh~A~  294 (301)
T 2b0o_E          230 LHYAALYNQPDCLKLLLKGRA--------LVGTVNEAGETALDIARKKHHKECEELLEQAQAG-TFAFPLHVDY  294 (301)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTC--------CCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-TTSSCCC---
T ss_pred             HHHHHHcCCHHHHHHHHHcCC--------CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-CCCChhHHHH
Confidence            999999999999999999999        8999999999999999999999999999997333 6899999999

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.82  E-value=2e-20  Score=159.34  Aligned_cols=116  Identities=18%  Similarity=0.133  Sum_probs=87.6

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHHH
Q 048145           66 DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSK  145 (578)
Q Consensus        66 d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A  145 (578)
                      +..|.||||+|+..|+.++++.|++.|+        +++.+|..|.||||+|+..|+.+++++|                
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~--------~~~~~~~~g~t~L~~A~~~~~~~~v~~L----------------   59 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGE--------DVNRTLEGGRKPLHYAADCGQLEILEFL----------------   59 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTC--------CTTSCCTTSSCHHHHHHHTTCHHHHHHH----------------
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCC--------CcCccCCCCCcHHHHHHHcCCHHHHHHH----------------
Confidence            4578899999999999999999999988        7888888899999999988875555544                


Q ss_pred             HHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHH
Q 048145          146 MYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVE  225 (578)
Q Consensus       146 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  225 (578)
                                                          +++|++++..                                  
T Consensus        60 ------------------------------------l~~g~~~~~~----------------------------------   69 (123)
T 3aaa_C           60 ------------------------------------LLKGADINAP----------------------------------   69 (123)
T ss_dssp             ------------------------------------HTTTCCTTCC----------------------------------
T ss_pred             ------------------------------------HHcCCCCCcC----------------------------------
Confidence                                                4444443222                                  


Q ss_pred             HHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHH
Q 048145          226 LMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAI  305 (578)
Q Consensus       226 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~  305 (578)
                                                 |..|+|       |||+|+..|+.+++++|++ .+++++.+|.+|+||||+|+
T Consensus        70 ---------------------------d~~g~t-------pL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           70 ---------------------------DKHHIT-------PLLSAVYEGHVSCVKLLLS-KGADKTVKGPDGLTAFEATD  114 (123)
T ss_dssp             ---------------------------CTTSCC-------HHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHCC
T ss_pred             ---------------------------CCCCCC-------HHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHhC
Confidence                                       235555       8888888888888888887 68888888888888888884


Q ss_pred             HhCcH
Q 048145          306 MYRQL  310 (578)
Q Consensus       306 ~~g~~  310 (578)
                      ..+..
T Consensus       115 ~~~~~  119 (123)
T 3aaa_C          115 NQAIK  119 (123)
T ss_dssp             CHHHH
T ss_pred             CHHHH
Confidence            44333

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.78  E-value=5.3e-19  Score=172.92  Aligned_cols=116  Identities=22%  Similarity=0.277  Sum_probs=105.7

Q ss_pred             CcccCChHHHHHHHhcCCchhh-----hccCCCCCCcHHHHHHhc---CChHHHHHHHccCCCchhhhhhhccCCCCChH
Q 048145            1 MALKGDRQGFLRYFAQQTDEEL-----LGYRTFNGECAIHVAAAM---EDPELIKKFLGRLPVEKRLEALMQTDDNGNTA   72 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~-----~~~~~~~g~T~Lh~Aa~~---g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~Tp   72 (578)
                      |+..||.+.+..++..  ....     ++..+..|.||||+|+..   |+.++|++|+++ +++     ++.+|.+|+||
T Consensus       137 a~~~~d~~~~~~ll~~--g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~-ga~-----in~~d~~g~Tp  208 (278)
T 1dcq_A          137 AVKTRDIFGLLQAYAD--GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGN-----LDKQTGKGSTA  208 (278)
T ss_dssp             HHHTTCHHHHHHHHHT--TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSC-----TTCCCTTCCCH
T ss_pred             HhhhcccHHHHHHHHh--hcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC-CCC-----ccccCCCCCCH
Confidence            4678999988888887  2222     445588899999999999   899999999999 999     99999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh
Q 048145           73 VHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ  132 (578)
Q Consensus        73 Lh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~  132 (578)
                      ||+|+..|+.+++++|+++|+        +++.+|..|.||||+|+..|+.+++++|++.
T Consensus       209 Lh~A~~~g~~~~v~~Ll~~ga--------d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~  260 (278)
T 1dcq_A          209 LHYCCLTDNAECLKLLLRGKA--------SIEIANESGETPLDIAKRLKHEHCEELLTQA  260 (278)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTC--------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCC--------CCCCccCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            999999999999999999999        8999999999999999999999999999987

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.78  E-value=5.7e-19  Score=178.78  Aligned_cols=151  Identities=13%  Similarity=0.095  Sum_probs=104.4

Q ss_pred             cCCCCChHHHHHHHc-CCHHHHHHHHhhcCCCCCCCCCCcccCC--CCCCCHHHHHHHcCcHHHHHHHHHhccccCCccH
Q 048145           65 TDDNGNTAVHALATI-NNVDVAKTLVEFSKQSNDADKNPLVVEN--KLGETPLYRAASVGKIEALRYFAEQVNQTAAISI  141 (578)
Q Consensus        65 ~d~~G~TpLh~Aa~~-g~~~iv~~Ll~~g~~~~~~~~~~~~~~n--~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~  141 (578)
                      .+..+.||||.|+.. |+.++++.|+++|+        +++..+  ..|.||||+|+..|+.+++               
T Consensus       195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Ga--------dvn~~~~~~~g~TpLh~Aa~~g~~~iv---------------  251 (368)
T 3jue_A          195 GSLHPGALLFRASGHPPSLPTMADALAHGA--------DVNWVNGGQDNATPLIQATAANSLLAC---------------  251 (368)
T ss_dssp             --CCHHHHHHHHTSSSCCHHHHHHHHHTTC--------CTTCCCTTTTCCCHHHHHHHTTCHHHH---------------
T ss_pred             ccCCCCcHHHHHHHccCCHHHHHHHHHcCC--------CCCccccccCCCCHHHHHHHCCCHHHH---------------
Confidence            344567899999998 99999999999998        788777  7888999999888775544               


Q ss_pred             HHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchh
Q 048145          142 LSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAG  221 (578)
Q Consensus       142 Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  221 (578)
                                                           ++|+++|++++..                              
T Consensus       252 -------------------------------------~~LL~~Gadvn~~------------------------------  264 (368)
T 3jue_A          252 -------------------------------------EFLLQNGANVNQA------------------------------  264 (368)
T ss_dssp             -------------------------------------HHHHHTTCCTTCC------------------------------
T ss_pred             -------------------------------------HHHHHcCCCCCCC------------------------------
Confidence                                                 4555555554322                              


Q ss_pred             hHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHH
Q 048145          222 EWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNIL  301 (578)
Q Consensus       222 ~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~L  301 (578)
                                                     |..|+|       |||+|+..|+.+++++||+ .+++++..|.+|+|||
T Consensus       265 -------------------------------d~~G~T-------pLh~A~~~g~~~~v~~LL~-~Gad~~~~d~~G~TpL  305 (368)
T 3jue_A          265 -------------------------------DSAGRG-------PLHHATILGHTGLACLFLK-RGADLGARDSEGRDPL  305 (368)
T ss_dssp             -------------------------------CTTSCC-------HHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHH
T ss_pred             -------------------------------CCCCCC-------HHHHHHHcCcHHHHHHHHH-CcCCCCCcCCCCCCHH
Confidence                                           335666       9999999999999999998 8999999999999999


Q ss_pred             HHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcc
Q 048145          302 HVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMK  346 (578)
Q Consensus       302 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~  346 (578)
                      |+|+..|+.+++++|+ ..+. ........+..+.|+++++....
T Consensus       306 ~~A~~~g~~~iv~lLl-~~~~-~~~~~~~~~~~~~t~l~i~~~~~  348 (368)
T 3jue_A          306 TIAMETANADIVTLLR-LAKM-REAEAAQGQAGDETYLDIFRDFS  348 (368)
T ss_dssp             HHHHHTTCHHHHHHHH-HHHC------------------------
T ss_pred             HHHHHCCCHHHHHHHH-HcCC-CcccccccCCCCCCHHHHHHHHH
Confidence            9999999999999998 4442 34455567788999999987665

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.78  E-value=4.6e-19  Score=173.36  Aligned_cols=67  Identities=16%  Similarity=0.183  Sum_probs=60.0

Q ss_pred             HHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhc
Q 048145          266 ILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADM  345 (578)
Q Consensus       266 pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~  345 (578)
                      |||+|+..|+.+++++|++ .|++++.+|.+|+||||+|+..|+.+++++|+ +.+    +        +.+++|.++.+
T Consensus       208 pLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll-~~g----a--------~~~~~~~~v~~  273 (278)
T 1dcq_A          208 ALHYCCLTDNAECLKLLLR-GKASIEIANESGETPLDIAKRLKHEHCEELLT-QAL----S--------GRFNSHVHVEY  273 (278)
T ss_dssp             HHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HHH----T--------TCCCSSCCCCC
T ss_pred             HHHHHHHcCCHHHHHHHHH-cCCCCCCccCCCCCHHHHHHHcCCHHHHHHHH-HcC----C--------CCCCcceeeec
Confidence            9999999999999999998 99999999999999999999999999999999 333    2        56788877765


Q ss_pred             c
Q 048145          346 K  346 (578)
Q Consensus       346 ~  346 (578)
                      .
T Consensus       274 ~  274 (278)
T 1dcq_A          274 E  274 (278)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.78  E-value=3.3e-19  Score=149.75  Aligned_cols=103  Identities=21%  Similarity=0.301  Sum_probs=94.9

Q ss_pred             cCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcc
Q 048145           25 YRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLV  104 (578)
Q Consensus        25 ~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~  104 (578)
                      ..|.+|.||||+|+..|+.+++++|++. +.+     ++.+|..|+||||+|+..|+.+++++|+++|+        +++
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~-----~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~--------~~~   69 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSK-GAD-----VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA--------DVN   69 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTT-TCC-----SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTC--------CTT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCC-----CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCC--------CCc
Confidence            4688999999999999999999999999 889     99999999999999999999999999999999        899


Q ss_pred             cCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccH
Q 048145          105 VENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISI  141 (578)
Q Consensus       105 ~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~  141 (578)
                      .+|..|.||||+|+..|+.+++++|+++     ..+..|.+|
T Consensus        70 ~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           70 ARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHH  111 (115)
T ss_dssp             CCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred             ccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence            9999999999999999999999999987     455666665

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.77  E-value=9.8e-19  Score=177.04  Aligned_cols=123  Identities=12%  Similarity=0.167  Sum_probs=113.3

Q ss_pred             CCCCcHHHHHHhc-CChHHHHHHHccCCCchhhhhhhccC--CCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcc
Q 048145           28 FNGECAIHVAAAM-EDPELIKKFLGRLPVEKRLEALMQTD--DNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLV  104 (578)
Q Consensus        28 ~~g~T~Lh~Aa~~-g~~~~v~~Ll~~~~~~~~~~~l~~~d--~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~  104 (578)
                      ..+.|+||.|+.. |+.++|+.|++. +++     ++.+|  ..|.||||+|+..|+.+++++|+++|+        +++
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~-Gad-----vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Ga--------dvn  262 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAH-GAD-----VNWVNGGQDNATPLIQATAANSLLACEFLLQNGA--------NVN  262 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHT-TCC-----TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTC--------CTT
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHc-CCC-----CCccccccCCCCHHHHHHHCCCHHHHHHHHHcCC--------CCC
Confidence            3467899999999 999999999998 999     99988  899999999999999999999999999        899


Q ss_pred             cCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHH
Q 048145          105 VENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVK  179 (578)
Q Consensus       105 ~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~  179 (578)
                      .+|..|.||||+|+..|+.+++++|+++     ..|.+|.||||+|+        ..|+                .++++
T Consensus       263 ~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~--------~~g~----------------~~iv~  318 (368)
T 3jue_A          263 QADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAM--------ETAN----------------ADIVT  318 (368)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--------HTTC----------------HHHHH
T ss_pred             CCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHH--------HCCC----------------HHHHH
Confidence            9999999999999999999999999998     57889999999999        7787                89999


Q ss_pred             HHHhccccc
Q 048145          180 MLVEKRIDD  188 (578)
Q Consensus       180 ~Ll~~g~~~  188 (578)
                      +|++.+...
T Consensus       319 lLl~~~~~~  327 (368)
T 3jue_A          319 LLRLAKMRE  327 (368)
T ss_dssp             HHHHHHC--
T ss_pred             HHHHcCCCc
Confidence            999877543

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.76  E-value=1.2e-18  Score=145.02  Aligned_cols=96  Identities=17%  Similarity=0.198  Sum_probs=85.8

Q ss_pred             hhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCC
Q 048145           20 EELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDAD   99 (578)
Q Consensus        20 ~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~   99 (578)
                      +......|.+|.||||+|+..|+.+++++|++. +++     ++.+|..|+||||+|+..|+.+++++|+++|+      
T Consensus        14 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~-----i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga------   81 (110)
T 2zgd_A           14 VPRGSHMGSDLGKKLLEAARAGQDDEVRILMAN-GAD-----VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA------   81 (110)
T ss_dssp             --------CCHHHHHHHHHHHTCHHHHHHHHHT-TCC-----TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC------
T ss_pred             CCcccccCCccchHHHHHHHcCCHHHHHHHHHc-CCC-----CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC------
Confidence            445677889999999999999999999999998 999     99999999999999999999999999999999      


Q ss_pred             CCCcccCCCCCCCHHHHHHHcCcHHHHHHH
Q 048145          100 KNPLVVENKLGETPLYRAASVGKIEALRYF  129 (578)
Q Consensus       100 ~~~~~~~n~~g~TpLh~A~~~g~~~iv~~L  129 (578)
                        +++.+|..|.||||+|+..|+.+++++|
T Consensus        82 --~~~~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           82 --DVXAQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             --CTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             --CccccccCCCcHHHHHHHcCCHHHHHHh
Confidence              8999999999999999999999999987

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.75  E-value=3.2e-18  Score=137.69  Aligned_cols=88  Identities=28%  Similarity=0.385  Sum_probs=81.5

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHH
Q 048145           68 NGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISIL  142 (578)
Q Consensus        68 ~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~L  142 (578)
                      +|+||||+|+..|+.+++++|++.|+        +++.+|..|.||||+|+.+|+.+++++|++.     ..|.+|.|||
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~--------~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l   72 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGA--------DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL   72 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTC--------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCC--------CCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHH
Confidence            58999999999999999999999999        8999999999999999999999999999998     5788999999


Q ss_pred             HHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhcccc
Q 048145          143 SSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRID  187 (578)
Q Consensus       143 h~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~  187 (578)
                      |+|+        ..|+                .+++++|+++|++
T Consensus        73 ~~A~--------~~~~----------------~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           73 HLAA--------RNGH----------------LEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHH--------HTTC----------------HHHHHHHHHTTCC
T ss_pred             HHHH--------HcCC----------------HHHHHHHHHcCCC
Confidence            9999        7788                8999999999864

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.68  E-value=2.8e-17  Score=137.79  Aligned_cols=68  Identities=16%  Similarity=0.097  Sum_probs=62.4

Q ss_pred             HHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchh
Q 048145          266 ILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTIL  339 (578)
Q Consensus       266 pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~L  339 (578)
                      |||+|+..|+.+++++|++ .+++++..|.+|+||||+|+..|+.+++++|+     +.|+++|.+|..|.||-
T Consensus        45 ~L~~A~~~~~~~~~~~Ll~-~g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll-----~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           45 PLHLAAKNGHAEIVKLLLA-KGADVNARSKDGNTPEHLAKKNGHHEIVKLLD-----AKGADVNARSWGSSHHH  112 (115)
T ss_dssp             TTHHHHTTTCHHHHHHHTT-TTCCTTCCCTTCCCTTHHHHTTTCHHHHHHHH-----TTSSSHHHHSCCCC---
T ss_pred             HHHHHHHcCcHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHCCCHHHHHHHH-----HcCCCCCcCCccccccc
Confidence            9999999999999999998 79999999999999999999999999999999     67778999999999874

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.62  E-value=6.6e-16  Score=128.33  Aligned_cols=83  Identities=17%  Similarity=0.115  Sum_probs=75.6

Q ss_pred             cccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchh
Q 048145          260 SMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTIL  339 (578)
Q Consensus       260 ~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~L  339 (578)
                      +.+|.||||+|+..|+.+++++|++ .+.+++.+|..|+||||+|+.+|+.+++++|+     +.|++++.+|..|+|||
T Consensus        21 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll-----~~ga~~~~~d~~g~tpl   94 (110)
T 2zgd_A           21 GSDLGKKLLEAARAGQDDEVRILMA-NGADVAAKDKNGSTPLHLAARNGHLEVVKLLL-----EAGADVXAQDKFGKTAF   94 (110)
T ss_dssp             -CCHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-----HTTCCTTCCCTTSCCHH
T ss_pred             CCccchHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH-----HcCCCccccccCCCcHH
Confidence            3445559999999999999999998 79999999999999999999999999999999     56778999999999999


Q ss_pred             hHHHhcccc
Q 048145          340 HQVADMKYY  348 (578)
Q Consensus       340 hlA~~~~~~  348 (578)
                      |+|+..++.
T Consensus        95 ~~A~~~~~~  103 (110)
T 2zgd_A           95 DISIDNGNE  103 (110)
T ss_dssp             HHHHHHTCH
T ss_pred             HHHHHcCCH
Confidence            999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	578
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-11
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-07
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-10
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.001
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.002
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	9e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.002
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	8e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.001
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.004

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.7 bits (151), Expect = 5e-11
 Identities = 51/304 (16%), Positives = 106/304 (34%), Gaps = 37/304 (12%)

Query: 33  AIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFS 92
            +HVA+ M    ++K  L      +R  +   ++    T +H  A   + +VAK L++  
Sbjct: 3   PLHVASFMGHLPIVKNLL------QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ-- 54

Query: 93  KQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-------VNQTAAISILSSK 145
              N A  N    + K  +TPL+ AA +G    ++   E                 ++++
Sbjct: 55  ---NKAKVN---AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAR 108

Query: 146 MYIAIWRQVIQGCPAIKKIWEKKQIHKKAVA-------LVKMLVEKRIDDCATHEKPTPG 198
                    +    A +    KK      VA       + ++L+E+     A  +    G
Sbjct: 109 EGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN---G 165

Query: 199 VTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCT---NKAHVDQYPQAVDQENDTTK 255
           +T + + +   N++  +V +              G T     A  +Q   A         
Sbjct: 166 LTPLHVAVHHNNLD--IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS 223

Query: 256 DMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEI 315
               S++ +  L  A   G  E++  +        +  N+ G   LH+      + + ++
Sbjct: 224 ANAESVQGVTPLHLAAQEGHAEMV-ALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADV 282

Query: 316 IKEK 319
           + + 
Sbjct: 283 LIKH 286

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 7e-07
 Identities = 52/356 (14%), Positives = 109/356 (30%), Gaps = 57/356 (16%)

Query: 26  RTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVA 85
                E  +H+AA     E+ K  L      +    +     +  T +H  A I + ++ 
Sbjct: 29  SNVKVETPLHMAARAGHTEVAKYLL------QNKAKVNAKAKDDQTPLHCAARIGHTNMV 82

Query: 86  KTLVE-------------------------FSKQSNDADKNPLVVENKLGETPLYRAASV 120
           K L+E                          +  +    +       K G TPL+ AA  
Sbjct: 83  KLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKY 142

Query: 121 GKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAV----- 175
           GK+         + + A  +         +   V      I K+   +     +      
Sbjct: 143 GKVRVAELL---LERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGY 199

Query: 176 -ALVKMLVEKRID--------DCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVEL 226
             L     + +++          + + +   GVT + L   +G+ E  +V +   +    
Sbjct: 200 TPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAE--MVALLLSKQANG 257

Query: 227 MIQVKKGCT--NKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRH 284
            +  K G T  +    + +    D        + ++ R     L   S+     L +   
Sbjct: 258 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL 317

Query: 285 KYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILH 340
           ++   ++   + G + LH A      +I  ++ +      A       ++G T L 
Sbjct: 318 QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG----ASPNEV-SSDGTTPLA 368

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 5e-06
 Identities = 39/273 (14%), Positives = 84/273 (30%), Gaps = 33/273 (12%)

Query: 112 TPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIH 171
           TPL+ A+ +G +  ++     + + A+ ++ + K+   +      G   +          
Sbjct: 2   TPLHVASFMGHLPIVKNL---LQRGASPNVSNVKVETPLHMAARAGHTEV---------- 48

Query: 172 KKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVK 231
                  K L++ +      + K     T +      G+     + +       L     
Sbjct: 49  ------AKYLLQNKAK---VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAG 99

Query: 232 KGCTNKAHVDQYPQAVDQENDTTKDMTSSMRT-MRILLFAVSNGIIEILEEIRHKYPQTL 290
               + A  + + + V    +         +     L  A   G + + E +  +     
Sbjct: 100 HTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH-P 158

Query: 291 DNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYYKQ 350
           +   + G   LHVA+ +  L+I +++  +               GYT LH  A     + 
Sbjct: 159 NAAGKNGLTPLHVAVHHNNLDIVKLLLPRG----GSPHSP-AWNGYTPLHIAAKQNQVEV 213

Query: 351 GTQAGPVLQFQDELEWFERVKDIAPPHYAMHRD 383
                  L         E V+ + P H A    
Sbjct: 214 ARS----LLQYGGSANAESVQGVTPLHLAAQEG 242

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 1e-05
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 8/77 (10%)

Query: 65  TDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE 124
               G + +H  A   + D+   L++     N A  N     +  G TPL  A  +G I 
Sbjct: 326 KTKLGYSPLHQAAQQGHTDIVTLLLK-----NGASPN---EVSSDGTTPLAIAKRLGYIS 377

Query: 125 ALRYFAEQVNQTAAISI 141
                    ++T+ + +
Sbjct: 378 VTDVLKVVTDETSFVLV 394

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.6 bits (140), Expect = 4e-10
 Identities = 36/261 (13%), Positives = 75/261 (28%), Gaps = 26/261 (9%)

Query: 66  DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEA 125
            ++G+TA+H      +      L+        A    L ++N LG+T L+ AA +G+   
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLG-----FSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 126 LRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKR 185
           +                    + A+             +  + +      A    L + +
Sbjct: 61  VEKLYAAGAGVLVAER---GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQ 117

Query: 186 IDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTN------KAH 239
                T   P            + N E +         ++L  +   G T          
Sbjct: 118 DCTPDTSHAPA-------AVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKD 170

Query: 240 VDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSN-GIIEILEEIRHKYPQTLDNVNEKGQ 298
            +      D   D  K   +  RT   L        ++E+L  ++             G+
Sbjct: 171 AEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELL--LKAGAD--PTARMYGGR 226

Query: 299 NILHVAIMYRQLEIFEIIKEK 319
             L  A++     +  +++  
Sbjct: 227 TPLGSALLRPNPILARLLRAH 247

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 5e-08
 Identities = 39/284 (13%), Positives = 94/284 (33%), Gaps = 22/284 (7%)

Query: 68  NGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALR 127
             N  +       +VD+ + L+E       A+ N    E + G TPL+ A  + + + + 
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLE-----GGANVN--FQEEEGGWTPLHNAVQMSREDIVE 56

Query: 128 YFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRID 187
                +   A   +             I G   + K++  K                   
Sbjct: 57  LL---LRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAA 113

Query: 188 DCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTN--KAHVDQYPQ 245
                +         +    +   ++    +  G    LM   +KG     K  +D+   
Sbjct: 114 VYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA 173

Query: 246 AVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAI 305
            V+  ++  ++             +  +  +E +  +   +   ++   E+G+  L +A+
Sbjct: 174 DVNACDNMGRNALIHAL------LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 227

Query: 306 MYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYYK 349
             + L + + + E+  + + +     D++G T L    ++K  K
Sbjct: 228 EKKHLGLVQRLLEQEHIEIND----TDSDGKTALLLAVELKLKK 267

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 3e-04
 Identities = 19/136 (13%), Positives = 38/136 (27%), Gaps = 39/136 (28%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGRLP-------------------------VEKRLEALM 63
            G  A+  AA     E++K  L  +                          VE     L+
Sbjct: 147 GGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLL 206

Query: 64  Q-------TDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYR 116
                     + G T +       ++ + + L+E        + N     +  G+T L  
Sbjct: 207 DHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE----QEHIEIN---DTDSDGKTALLL 259

Query: 117 AASVGKIEALRYFAEQ 132
           A  +   +      ++
Sbjct: 260 AVELKLKKIAELLCKR 275

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 0.001
 Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 10/76 (13%)

Query: 26  RTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVA 85
           R   G+  + +A   +   L+++ L +  +E     +  TD +G TA+     +    +A
Sbjct: 215 RGERGKTPLILAVEKKHLGLVQRLLEQEHIE-----INDTDSDGKTALLLAVELKLKKIA 269

Query: 86  KTLVEFSKQSNDADKN 101
           + L +       A  +
Sbjct: 270 ELLCK-----RGASTD 280

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 0.002
 Identities = 43/290 (14%), Positives = 95/290 (32%), Gaps = 25/290 (8%)

Query: 33  AIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFS 92
            +  A   ED +L+++ L     E       Q ++ G T +H    ++  D+ + L+   
Sbjct: 8   LLIKAVQNEDVDLVQQLL-----EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62

Query: 93  KQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWR 152
                  KN          TP   AA  G ++ L+ F  +              + A   
Sbjct: 63  ADPVLRKKNG--------ATPFLLAAIAGSVKLLKLFLSKGADVNECDF---YGFTAFME 111

Query: 153 QVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCAT--HEKPTPGVTEI-SLGLGKG 209
             + G     K   K+  +       K   E+     AT   +    G  E+  + L + 
Sbjct: 112 AAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM 171

Query: 210 NIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLF 269
             +    D      +   +        +A            N   +   +       L+ 
Sbjct: 172 GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKT------PLIL 225

Query: 270 AVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEK 319
           AV    + +++ +  +    +++ +  G+  L +A+  +  +I E++ ++
Sbjct: 226 AVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 50.9 bits (120), Expect = 2e-07
 Identities = 33/289 (11%), Positives = 75/289 (25%), Gaps = 15/289 (5%)

Query: 31  ECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVE 90
           E  I +         I + + R  V       +    +  T +H +A+ ++ + ++ L+ 
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVN------IIDPRHNRTVLHWIASNSSAEKSEDLIV 54

Query: 91  FSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAI 150
              +   A    +   +    TPL  A    +   + Y  +        +        A+
Sbjct: 55  HEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNK---SERSAL 111

Query: 151 WRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGN 210
            +        +           K                  H +    V    L + KG 
Sbjct: 112 HQAAANRDFGMMVYM-LNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGA 170

Query: 211 IEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFA 270
                                      +++      V ++           +T   ++ A
Sbjct: 171 KVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTP--IMLA 228

Query: 271 VSNGIIEILEE-IRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKE 318
              G IE++   I+      ++ V+        +A       I +I   
Sbjct: 229 AQEGRIEVVMYLIQQGAS--VEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 50.7 bits (120), Expect = 2e-07
 Identities = 37/305 (12%), Positives = 65/305 (21%), Gaps = 70/305 (22%)

Query: 26  RTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQ-------TDDNGNTAVHALAT 78
           +    E    VAA            G       L  L+               A    A 
Sbjct: 86  KGIKSEVICFVAAIT----------GCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAE 135

Query: 79  INNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAA 138
             ++ V   L E +     A                  AA  G +  L    E     A 
Sbjct: 136 NGHLHVLNRLCELAPTEIMAMIQ------AENYHAFRLAAENGHLHVLNRLCELAPTEAT 189

Query: 139 ISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRID-DCATHEKPTP 197
             I +   Y   W  V +G   +                +  L++  +    A   +   
Sbjct: 190 AMIQAENYYAFRWAAVGRGHHNV----------------INFLLDCPVMLAYAEIHEFEY 233

Query: 198 G---VTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTT 254
           G   V            E       +       +  K  C    ++              
Sbjct: 234 GEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYM-------------- 279

Query: 255 KDMTSSMRTMRILLFAVSNGIIEI----LEEIRHKYPQTLDNVNEKGQNILHVAIMYRQL 310
                    +R L+      +++     L     K       +      +L +A+     
Sbjct: 280 ---------LRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQ 330

Query: 311 EIFEI 315
               +
Sbjct: 331 GACAL 335

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 49.9 bits (118), Expect = 4e-07
 Identities = 27/301 (8%), Positives = 66/301 (21%), Gaps = 39/301 (12%)

Query: 62  LMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKN---PLVVENKLGETPLYRAA 118
           LM         +    T N   V + L  +    N   K        +    E   + AA
Sbjct: 39  LMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAA 98

Query: 119 SVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQ--------- 169
             G   AL      +     + ++ ++ Y A       G   +     +           
Sbjct: 99  ITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQ 158

Query: 170 ------IHKKA----VALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVS 219
                     A    + ++  L E    +     +           +G+G+         
Sbjct: 159 AENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHH-------- 210

Query: 220 AGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEIL 279
               +  ++            +             + +            +  +G+ +++
Sbjct: 211 --NVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLV 268

Query: 280 EEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTIL 339
            +                   L        L+    +     +        I  +   +L
Sbjct: 269 TKSECLQGFY-------MLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELL 321

Query: 340 H 340
            
Sbjct: 322 R 322

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 9e-07
 Identities = 27/247 (10%), Positives = 63/247 (25%), Gaps = 23/247 (9%)

Query: 67  DNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEAL 126
           ++G+T +H      N+     LV   +Q    + +   + N L +TPL+ A         
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQ-GGRELD---IYNNLRQTPLHLA--------- 47

Query: 127 RYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRI 186
                    T   S++   +        +            +      +  +        
Sbjct: 48  -------VITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGT 100

Query: 187 DDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQA 246
            D             +++        + +++  A      +   +    +    +     
Sbjct: 101 LDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV 160

Query: 247 VDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEE-IRHKYPQTLDNVNEKGQNILHVAI 305
                               L  A   G++ ++   +R          N      L VA 
Sbjct: 161 QLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSG--ADSSLKNCHNDTPLMVAR 218

Query: 306 MYRQLEI 312
             R ++I
Sbjct: 219 SRRVIDI 225

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 8/65 (12%)

Query: 63  MQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGK 122
                +G++A+H+ +    + + +TLV      + AD +   ++N   +TPL  A S   
Sbjct: 171 NAQMYSGSSALHSASGRGLLPLVRTLVR-----SGADSS---LKNCHNDTPLMVARSRRV 222

Query: 123 IEALR 127
           I+ LR
Sbjct: 223 IDILR 227

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 11/90 (12%)

Query: 29  NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTL 88
             E   +         +++    +  +   L A    D NG+T ++  A + N+ +   L
Sbjct: 222 EKESKPNDKNGERKDSILENLDLKWIIANMLNA---QDSNGDTCLNIAARLGNISIVDAL 278

Query: 89  VEFSKQSNDADKNPLVVENKLGETPLYRAA 118
           ++       AD     + NK G  P+   A
Sbjct: 279 LD-----YGADPF---IANKSGLRPVDFGA 300

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (100), Expect = 3e-05
 Identities = 28/250 (11%), Positives = 62/250 (24%), Gaps = 25/250 (10%)

Query: 70  NTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYF 129
           N  +H     N     + L+     S  +       +++ G  PL+ + S    E   + 
Sbjct: 1   NYPLHQACMENEFFKVQELLH----SKPSLLL---QKDQDGRIPLHWSVSFQAHEITSFL 53

Query: 130 AEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDC 189
             ++             +         G   + K    + +      +            
Sbjct: 54  LSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ---GVTCLH 110

Query: 190 ATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQ 249
               K    V++  +  G     K   +         +  +K                D+
Sbjct: 111 LAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK 170

Query: 250 ENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQ 309
           +  T                 ++ G  +    +  KY    D V+ KG     VA+    
Sbjct: 171 QGWTPLFHA------------LAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---N 215

Query: 310 LEIFEIIKEK 319
            ++ +     
Sbjct: 216 EQVKKFFLNN 225

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.6 bits (88), Expect = 8e-04
 Identities = 23/221 (10%), Positives = 52/221 (23%), Gaps = 23/221 (10%)

Query: 95  SNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQV 154
           +  A+ N     +K GET L+ AA   + +A +   +      +          A     
Sbjct: 10  AQGAELN--ATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAAD 67

Query: 155 IQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKK 214
             G   I        ++ +       L+           +         L     +I   
Sbjct: 68  AMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVED--------LITADADINAA 119

Query: 215 VVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNG 274
                        +   +             A D +++T   + +   +       + N 
Sbjct: 120 DNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNF 179

Query: 275 IIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEI 315
                           +  +   +    VA      +I  +
Sbjct: 180 A-------------NREITDHMDRLPRDVASERLHHDIVRL 207

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 68  NGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRA 117
           +G++ +H         +   ++   K  + A  N    +N L +TPL+ A
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVK-GDLAFLN---FQNNLQQTPLHLA 46

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.0 bits (84), Expect = 0.004
 Identities = 30/240 (12%), Positives = 70/240 (29%), Gaps = 18/240 (7%)

Query: 110 GETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQ 169
                  A S G  E +      + + A I+  +     A+ +  I     + K   +  
Sbjct: 40  DGAVFLAACSSGDTEEVLRL---LERGADINYANVDGLTALHQACIDDNVDMVKFLVENG 96

Query: 170 IHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQ 229
            +         +       C   +     +++ +      +     +D++  E +E ++Q
Sbjct: 97  ANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQ 156

Query: 230 VKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRI---------LLFAVSNGIIEILE 280
            +             +         +   +S     +         L  A + G  E+L+
Sbjct: 157 NEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK 216

Query: 281 EIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILH 340
            +       ++  +  G   LH A  + + E   I+ E     L +     +  G T   
Sbjct: 217 LLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVEN----LCDMEAV-NKVGQTAFD 270

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	578
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.97
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.96
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.94
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.93
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.91
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.91
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.91
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.91
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.9
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.89
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.88
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.87
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.86
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.86
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.85
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.84
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.81
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.8

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-35  Score=303.04  Aligned_cols=328  Identities=16%  Similarity=0.175  Sum_probs=237.0

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN   80 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g   80 (578)
                      ||..|+.+.++.++++   +..++..|..|+||||+|+..|+.++|++|+++ |++     ++.+|.+|+||||+|+..|
T Consensus         7 Aa~~g~~~~v~~Ll~~---g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-gad-----i~~~~~~g~t~L~~A~~~g   77 (408)
T d1n11a_           7 ASFMGHLPIVKNLLQR---GASPNVSNVKVETPLHMAARAGHTEVAKYLLQN-KAK-----VNAKAKDDQTPLHCAARIG   77 (408)
T ss_dssp             HHHHTCHHHHHHHHHT---TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH-TCC-----SSCCCTTSCCHHHHHHHHT
T ss_pred             HHHCcCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-cCC-----CCCCCCCCCCHHHHHHHcC
Confidence            6889999988888877   345678899999999999999999999999999 999     9999999999999999999


Q ss_pred             CHHHHHHHHhhcCCCCCCC-------------------------CCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh---
Q 048145           81 NVDVAKTLVEFSKQSNDAD-------------------------KNPLVVENKLGETPLYRAASVGKIEALRYFAEQ---  132 (578)
Q Consensus        81 ~~~iv~~Ll~~g~~~~~~~-------------------------~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~---  132 (578)
                      +.+++++|++.+++.....                         .......+..+.++|+.|+..++.++++.|+++   
T Consensus        78 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~  157 (408)
T d1n11a_          78 HTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH  157 (408)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999998876432110                         124566788899999999999999999999987   


Q ss_pred             --ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCC
Q 048145          133 --VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGN  210 (578)
Q Consensus       133 --~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~  210 (578)
                        ..+.+|.+|||+|+        ..|+                .+++++|+++|++++..   +..+.+++|++.....
T Consensus       158 ~~~~~~~~~~~L~~A~--------~~~~----------------~~~~~~Ll~~g~~~~~~---~~~~~t~l~~~~~~~~  210 (408)
T d1n11a_         158 PNAAGKNGLTPLHVAV--------HHNN----------------LDIVKLLLPRGGSPHSP---AWNGYTPLHIAAKQNQ  210 (408)
T ss_dssp             TTCCCSSCCCHHHHHH--------HTTC----------------HHHHHHHGGGTCCSCCC---CTTCCCHHHHHHHTTC
T ss_pred             CCcCCCcCchHHHHHH--------HcCC----------------HHHHHHHHhcCCccccc---CCCCCCcchhhhccch
Confidence              56788999999999        7777                89999999999887655   3356788877654433


Q ss_pred             ccccc---------cccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHH
Q 048145          211 IEKKV---------VDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEE  281 (578)
Q Consensus       211 ~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~  281 (578)
                      .....         ..........++.....+.... +..........+..       +..|.+|||.|++.++.+++++
T Consensus       211 ~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~-~~~~~~~~~~~~~~-------~~~g~~~l~~a~~~~~~~i~~~  282 (408)
T d1n11a_         211 VEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEM-VALLLSKQANGNLG-------NKSGLTPLHLVAQEGHVPVADV  282 (408)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHH-HHHHHTTTCCTTCC-------CTTCCCHHHHHHHHTCHHHHHH
T ss_pred             hhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhH-hhhhhccccccccc-------cCCCCChhhhhhhcCcHHHHHH
Confidence            21110         0000000000000000000000 00000011111222       3334448999999999999998


Q ss_pred             HHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcccccCCCCCChHHhHH
Q 048145          282 IRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYYKQGTQAGPVLQFQ  361 (578)
Q Consensus       282 Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~~~~~~~~~~l~l~  361 (578)
                      |++ .|++++..+..+.||||.|+..++.+++++++     +.|+++|.+|.+|+||||+|++.|+.             
T Consensus       283 Ll~-~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll-----~~g~~in~~d~~G~T~Lh~A~~~g~~-------------  343 (408)
T d1n11a_         283 LIK-HGVMVDATTRMGYTPLHVASHYGNIKLVKFLL-----QHQADVNAKTKLGYSPLHQAAQQGHT-------------  343 (408)
T ss_dssp             HHH-HTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHH-----HTTCCTTCCCTTSCCHHHHHHHTTCH-------------
T ss_pred             HHH-CCCccccccccccccchhhcccCcceeeeeec-----cccccccccCCCCCCHHHHHHHcCCH-------------
Confidence            887 77888888888888888888888888888888     45677888888888999988888864             


Q ss_pred             HHHHHHHHHHhhCCCccccccccCCCCChhhhhhhh
Q 048145          362 DELEWFERVKDIAPPHYAMHRDKNKRMTANDLFDLT  397 (578)
Q Consensus       362 ~~l~~~~~v~~~~~~~~~~~~n~~~g~t~~~l~~~~  397 (578)
                            +.|+.++..+......+++|+||.+++.+.
T Consensus       344 ------~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~  373 (408)
T d1n11a_         344 ------DIVTLLLKNGASPNEVSSDGTTPLAIAKRL  373 (408)
T ss_dssp             ------HHHHHHHHTTCCSCCCCSSSCCHHHHHHHT
T ss_pred             ------HHHHHHHHCCCCCCCCCCCCCCHHHHHHHc
Confidence                  345555555554444344888888887654

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.2e-35  Score=284.08  Aligned_cols=234  Identities=18%  Similarity=0.114  Sum_probs=156.3

Q ss_pred             ccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCc
Q 048145           24 GYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPL  103 (578)
Q Consensus        24 ~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~  103 (578)
                      ..+|.+|+||||+||+.|+.++|++|+++ +++  ...++.+|.+|+||||+||..|+.+++++|+++|+        ++
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~-~a~--~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga--------~i   71 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGF-SAG--HEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA--------GV   71 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHH-HTT--SGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC--------CS
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHc-CCC--cccccCcCCCCCCccchHHhhcccccccccccccc--------cc
Confidence            45789999999999999999999999998 544  23367889999999999999999999999999999        89


Q ss_pred             ccCCCCCCCHHHHHHHcCcHHHHHHHHHh--ccccCCccHHHHHHHHHHHHHhccCc-hHHHHHHHhhhhhHHHHHHHHH
Q 048145          104 VVENKLGETPLYRAASVGKIEALRYFAEQ--VNQTAAISILSSKMYIAIWRQVIQGC-PAIKKIWEKKQIHKKAVALVKM  180 (578)
Q Consensus       104 ~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~--~~~~~g~t~Lh~A~~~~~~~~~~~G~-~~~~~~~~~~~~~~~~~~~v~~  180 (578)
                      +.+|.+|.||||+|+..|+.+++++|++.  ..+.............      ..+. ...........  .........
T Consensus        72 ~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~--~~~~~~~~~  143 (255)
T d1oy3d_          72 LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQD------CTPDTSHAPAAVDSQP--NPENEEEPR  143 (255)
T ss_dssp             SCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-------------------------------------------
T ss_pred             cccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhh------hcccchHHHHHHHhhc--chhHHHHHH
Confidence            99999999999999999999999999886  1111111111111100      0000 00000000000  000111122


Q ss_pred             HHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCccccccccccccccccc
Q 048145          181 LVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSS  260 (578)
Q Consensus       181 Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~  260 (578)
                      ....+.+++.                                                             +|..|.|  
T Consensus       144 ~~~~~~~in~-------------------------------------------------------------~d~~g~T--  160 (255)
T d1oy3d_         144 DEDWRLQLEA-------------------------------------------------------------ENYDGHT--  160 (255)
T ss_dssp             CCCGGGGTTC-------------------------------------------------------------CCTTSCC--
T ss_pred             hhhcCccccc-------------------------------------------------------------ccccCcc--
Confidence            2222222221                                                             2234555  


Q ss_pred             ccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhh
Q 048145          261 MRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILH  340 (578)
Q Consensus       261 ~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~Lh  340 (578)
                           |||+|++.|+.+++++|++......+..+..|+||||+|++.|+.+++++|+     +.|++++.+|++|+||||
T Consensus       161 -----pLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll-----~~gadin~~d~~g~t~L~  230 (255)
T d1oy3d_         161 -----PLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLL-----KAGADPTARMYGGRTPLG  230 (255)
T ss_dssp             -----HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH-----HTTCCTTCCCTTSCCHHH
T ss_pred             -----cccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHH-----HCCCCCCCCCCCCCCHHH
Confidence                 8888888888888888887443333345667888888888888888888888     456678888888888888


Q ss_pred             HHHhccccc
Q 048145          341 QVADMKYYK  349 (578)
Q Consensus       341 lA~~~~~~~  349 (578)
                      +|+..++.+
T Consensus       231 ~A~~~~~~~  239 (255)
T d1oy3d_         231 SALLRPNPI  239 (255)
T ss_dssp             HHHTSSCHH
T ss_pred             HHHHCCCHH
Confidence            888877754

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-34  Score=268.60  Aligned_cols=206  Identities=17%  Similarity=0.166  Sum_probs=174.6

Q ss_pred             CCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCC
Q 048145           30 GECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKL  109 (578)
Q Consensus        30 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~  109 (578)
                      +++.||.+|+.|+.+.|+.++...+.+     ++.+|.+|+||||+||..|+.+++++|++.+.        .....+..
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~-----~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~--------~~~~~~~~   69 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSL-----ATRTDQDSRTALHWACSAGHTEIVEFLLQLGV--------PVNDKDDA   69 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGG-----GGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTC--------CSCCCCTT
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCc-----CcCcCCCCCCHHHHHHHhhhhccccccccccc--------cccccccc
Confidence            468888889999988888887765666     88889999999999999999999999998887        66677778


Q ss_pred             CCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhc
Q 048145          110 GETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEK  184 (578)
Q Consensus       110 g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~  184 (578)
                      +.++++.|+..|+.+++++|+++     ..|.+|.||||+|+        ..|+                .+++++|+++
T Consensus        70 ~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~--------~~~~----------------~e~~~~Ll~~  125 (223)
T d1uoha_          70 GWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAA--------SKNR----------------HEIAVMLLEG  125 (223)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH--------HHTC----------------HHHHHHHHHT
T ss_pred             ccccccccccccccchhHHHhccCceeEeeCCCCCchhhHHH--------HcCC----------------HHHHHHHHHC
Confidence            88999999999999999998887     56788899999988        5666                7899999998


Q ss_pred             cccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccch
Q 048145          185 RIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTM  264 (578)
Q Consensus       185 g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~  264 (578)
                      |.+++..                                                             +..|.|      
T Consensus       126 g~d~~~~-------------------------------------------------------------~~~~~t------  138 (223)
T d1uoha_         126 GANPDAK-------------------------------------------------------------DHYEAT------  138 (223)
T ss_dssp             TCCTTCC-------------------------------------------------------------CTTSCC------
T ss_pred             CCCCCCc-------------------------------------------------------------CCCCCc------
Confidence            8776433                                                             224555      


Q ss_pred             hHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHh
Q 048145          265 RILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVAD  344 (578)
Q Consensus       265 ~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~  344 (578)
                       |||+|+..|+.+++++|++ .+.+++..|.+|+||||.|+..|+.+++++|+     +.|++++.+|++|+||||+|. 
T Consensus       139 -~L~~a~~~~~~~~~~~L~~-~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL-----~~Gad~~~~d~~g~tpl~~A~-  210 (223)
T d1uoha_         139 -AMHRAAAKGNLKMIHILLY-YKASTNIQDTEGNTPLHLACDEERVEEAKLLV-----SQGASIYIENKEEKTPLQVAK-  210 (223)
T ss_dssp             -HHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHH-----HTTCCSCCCCTTSCCHHHHCC-
T ss_pred             -cchhhhhcCCcchhhhhcc-ccceeeeccCCCCceeccccccCcHHHHHHHH-----HCCCCCCCCCCCCCCHHHHHH-
Confidence             9999999999999999987 88889999999999999999999999999999     567789999999999999984 


Q ss_pred             ccc
Q 048145          345 MKY  347 (578)
Q Consensus       345 ~~~  347 (578)
                      .|+
T Consensus       211 ~~~  213 (223)
T d1uoha_         211 GGL  213 (223)
T ss_dssp             TTH
T ss_pred             CCC
Confidence            454

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-34  Score=268.09  Aligned_cols=207  Identities=19%  Similarity=0.192  Sum_probs=188.4

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN   80 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g   80 (578)
                      +|.+|+.+.+++++.+  .+...+.+|.+|+||||+||..|+.+++++|++. +..     ....+..+.++++.|+..|
T Consensus        10 ~a~~G~~~~v~~~l~~--~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~-~~~-----~~~~~~~~~~~~~~~~~~~   81 (223)
T d1uoha_          10 LAYSGKLEELKESILA--DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVP-----VNDKDDAGWSPLHIAASAG   81 (223)
T ss_dssp             HHHTTCHHHHHHHHHH--CGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHH-TCC-----SCCCCTTCCCHHHHHHHHT
T ss_pred             HHHhCCHHHHHHHHHh--CCCcCcCcCCCCCCHHHHHHHhhhhccccccccc-ccc-----ccccccccccccccccccc
Confidence            4789999999999998  5667889999999999999999999999999998 776     7778889999999999999


Q ss_pred             CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhc
Q 048145           81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVI  155 (578)
Q Consensus        81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~  155 (578)
                      +.+++++|+++|+        +++.+|..|.||||+|+.+|+.+++++|++.     ..+..|.||||+|+        .
T Consensus        82 ~~~i~~~Ll~~~~--------d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~--------~  145 (223)
T d1uoha_          82 RDEIVKALLGKGA--------QVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAA--------A  145 (223)
T ss_dssp             CHHHHHHHHHTTC--------CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--------H
T ss_pred             ccchhHHHhccCc--------eeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhh--------h
Confidence            9999999999999        8999999999999999999999999999987     56789999999999        7


Q ss_pred             cCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCc
Q 048145          156 QGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCT  235 (578)
Q Consensus       156 ~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  235 (578)
                      .|+                .+++++|++++.+++..                                            
T Consensus       146 ~~~----------------~~~~~~L~~~~~~i~~~--------------------------------------------  165 (223)
T d1uoha_         146 KGN----------------LKMIHILLYYKASTNIQ--------------------------------------------  165 (223)
T ss_dssp             TTC----------------HHHHHHHHHTTCCSCCC--------------------------------------------
T ss_pred             cCC----------------cchhhhhccccceeeec--------------------------------------------
Confidence            777                78899999887765433                                            


Q ss_pred             cccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHH
Q 048145          236 NKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEI  315 (578)
Q Consensus       236 ~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~  315 (578)
                                       |..|+|       |||.|+..|+.+++++||+ .|++++.+|.+|+||||+| ++|+.+++++
T Consensus       166 -----------------d~~g~T-------pL~~Aa~~g~~~~v~~LL~-~Gad~~~~d~~g~tpl~~A-~~~~~~i~~~  219 (223)
T d1uoha_         166 -----------------DTEGNT-------PLHLACDEERVEEAKLLVS-QGASIYIENKEEKTPLQVA-KGGLGLILKR  219 (223)
T ss_dssp             -----------------CTTCCC-------HHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHC-CTTHHHHHHH
T ss_pred             -----------------cCCCCc-------eeccccccCcHHHHHHHHH-CCCCCCCCCCCCCCHHHHH-HCCCHHHHhc
Confidence                             235666       9999999999999999998 8999999999999999998 5799999999


Q ss_pred             HH
Q 048145          316 IK  317 (578)
Q Consensus       316 Ll  317 (578)
                      |+
T Consensus       220 Ll  221 (223)
T d1uoha_         220 MV  221 (223)
T ss_dssp             HH
T ss_pred             cc
Confidence            98

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-33  Score=265.41  Aligned_cols=209  Identities=17%  Similarity=0.167  Sum_probs=181.8

Q ss_pred             CcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCC
Q 048145           31 ECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLG  110 (578)
Q Consensus        31 ~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g  110 (578)
                      +||||+||..|+.++|+.|++..+.+     ++.+|.+|+||||+|+..|+.+++++|+++|++.+     ..+..+..|
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~-----~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~-----~~~~~~~~~   70 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSL-----LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN-----LDDYPDDSG   70 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGG-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCC-----GGGCCCTTS
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCc-----ccccCCCCCCHHHHHHHcCCccccchhhhhhcccc-----ccccccccc
Confidence            58999999999999999999875677     99999999999999999999999999999998211     234667889


Q ss_pred             CCHHHHHHHcCcHHHHHHHHHh-------ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHh
Q 048145          111 ETPLYRAASVGKIEALRYFAEQ-------VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVE  183 (578)
Q Consensus       111 ~TpLh~A~~~g~~~iv~~Ll~~-------~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~  183 (578)
                      .||+|+|+..+..++++.++..       ..+..+.|+++.++        ..++                .++++.|++
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~~----------------~~~~~~l~~  126 (229)
T d1ixva_          71 WTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV--------GKKW----------------FEVSQFLIE  126 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHH--------HTTC----------------HHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccc--------ccch----------------hhhhhhhhh
Confidence            9999999999999999998876       35678899999998        6666                899999998


Q ss_pred             ccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccc
Q 048145          184 KRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRT  263 (578)
Q Consensus       184 ~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g  263 (578)
                      .|.+....                                                             |..|+|     
T Consensus       127 ~~~~~~~~-------------------------------------------------------------~~~g~t-----  140 (229)
T d1ixva_         127 NGASVRIK-------------------------------------------------------------DKFNQI-----  140 (229)
T ss_dssp             TTCCSCCC-------------------------------------------------------------CTTSCC-----
T ss_pred             hccccccc-------------------------------------------------------------CCCCCC-----
Confidence            87654322                                                             235566     


Q ss_pred             hhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHH
Q 048145          264 MRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVA  343 (578)
Q Consensus       264 ~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~  343 (578)
                        |||+|+..|+.+++++|++..+.+++.+|.+|+||||+|+++|+.+++++|+++    .|++++.+|++|+||||+|+
T Consensus       141 --~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~----~gad~~~~d~~g~t~l~~A~  214 (229)
T d1ixva_         141 --PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK----YGAEYDLVDNKGAKAEDVAL  214 (229)
T ss_dssp             --HHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHH----HCCCSCCCCTTSCCTGGGCS
T ss_pred             --ccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHh----cCCCCCCcCCCCCCHHHHHh
Confidence              999999999999999999977789999999999999999999999999999933    36679999999999999998


Q ss_pred             hc
Q 048145          344 DM  345 (578)
Q Consensus       344 ~~  345 (578)
                      ..
T Consensus       215 ~~  216 (229)
T d1ixva_         215 NE  216 (229)
T ss_dssp             CH
T ss_pred             hH
Confidence            53

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-32  Score=279.19  Aligned_cols=309  Identities=17%  Similarity=0.157  Sum_probs=219.0

Q ss_pred             CcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCC
Q 048145           31 ECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLG  110 (578)
Q Consensus        31 ~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g  110 (578)
                      .||||+||..|+.++|+.|+++ |++     ++.+|.+|+||||+||+.|+.+++++|+++|+        +++.+|.+|
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~-g~~-----in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga--------di~~~~~~g   66 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQR-GAS-----PNVSNVKVETPLHMAARAGHTEVAKYLLQNKA--------KVNAKAKDD   66 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHT-TCC-----SCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTC--------CSSCCCTTS
T ss_pred             CChHHHHHHCcCHHHHHHHHHC-CCC-----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcC--------CCCCCCCCC
Confidence            4999999999999999999999 999     99999999999999999999999999999999        899999999


Q ss_pred             CCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHH--------------HHhccCc-hHHHHHHHhhhh
Q 048145          111 ETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIW--------------RQVIQGC-PAIKKIWEKKQI  170 (578)
Q Consensus       111 ~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~--------------~~~~~G~-~~~~~~~~~~~~  170 (578)
                      .||||+|+.+|+.+++++|+..     .......+++..+......              .....|. ++..+.....  
T Consensus        67 ~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~--  144 (408)
T d1n11a_          67 QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGK--  144 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTC--
T ss_pred             CCHHHHHHHcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCC--
Confidence            9999999999999999999987     2233444555555432110              0001121 3333333322  


Q ss_pred             hHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCcccccc--------cc
Q 048145          171 HKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHV--------DQ  242 (578)
Q Consensus       171 ~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~--------~~  242 (578)
                          .++++.|+++|.+++..+   ..+.+++|+|+..+          ..+.++.++..+.+....-..        ..
T Consensus       145 ----~~~v~~ll~~~~~~~~~~---~~~~~~L~~A~~~~----------~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~  207 (408)
T d1n11a_         145 ----VRVAELLLERDAHPNAAG---KNGLTPLHVAVHHN----------NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAK  207 (408)
T ss_dssp             ----HHHHHHHHHTTCCTTCCC---SSCCCHHHHHHHTT----------CHHHHHHHGGGTCCSCCCCTTCCCHHHHHHH
T ss_pred             ----HHHHHHHHHcCCCCCcCC---CcCchHHHHHHHcC----------CHHHHHHHHhcCCcccccCCCCCCcchhhhc
Confidence                789999999998886653   35678888885544          344555554332211000000        00


Q ss_pred             Cccc---ccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHh
Q 048145          243 YPQA---VDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEK  319 (578)
Q Consensus       243 ~~~~---~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~  319 (578)
                      ....   .............+..|.||||+|+..++.++++.+++ .+...+..|..|.||||.|++.++.+++++|+  
T Consensus       208 ~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll--  284 (408)
T d1n11a_         208 QNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS-KQANGNLGNKSGLTPLHLVAQEGHVPVADVLI--  284 (408)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH--
T ss_pred             cchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhc-cccccccccCCCCChhhhhhhcCcHHHHHHHH--
Confidence            0000   00000001111224445559999999999999999998 78889999999999999999999999999999  


Q ss_pred             hchhhhhhhhcccCCCCchhhHHHhcccccCCCCCChHHhHHHHHHHHHHHHhhCCCccccccccCCCCChhhhhhhh
Q 048145          320 MQLSLAEWALKIDNEGYTILHQVADMKYYKQGTQAGPVLQFQDELEWFERVKDIAPPHYAMHRDKNKRMTANDLFDLT  397 (578)
Q Consensus       320 ~~~~~~~~~~~~d~~G~T~LhlA~~~~~~~~~~~~~~~l~l~~~l~~~~~v~~~~~~~~~~~~n~~~g~t~~~l~~~~  397 (578)
                         +.|.+++..+..+.||||.|+..++.                   +.++.++..+......+.+|+||+.++.+.
T Consensus       285 ---~~g~~~~~~~~~~~t~L~~~~~~~~~-------------------~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~  340 (408)
T d1n11a_         285 ---KHGVMVDATTRMGYTPLHVASHYGNI-------------------KLVKFLLQHQADVNAKTKLGYSPLHQAAQQ  340 (408)
T ss_dssp             ---HHTCCTTCCCSSCCCHHHHHHHSSCS-------------------HHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             ---HCCCccccccccccccchhhcccCcc-------------------eeeeeeccccccccccCCCCCCHHHHHHHc
Confidence               56778999999999999999998865                   122333333333333334999999876543

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=1.6e-33  Score=274.28  Aligned_cols=223  Identities=15%  Similarity=0.118  Sum_probs=179.4

Q ss_pred             CCCCCcHHHHHHhcCChHHHHHHHcc-------CCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCC
Q 048145           27 TFNGECAIHVAAAMEDPELIKKFLGR-------LPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDAD   99 (578)
Q Consensus        27 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~-------~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~   99 (578)
                      +.+|+||||+||..|+.++|+.|+.+       .|++     ++.+|.+|+||||+|++.|+.++|++|+++|+      
T Consensus        30 ~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gad-----vn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Ga------   98 (277)
T d2fo1e1          30 PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD-----VNAMDCDENTPLMLAVLARRRRLVAYLMKAGA------   98 (277)
T ss_dssp             CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC-----TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC------
T ss_pred             CCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCC-----ccccCCCCCeeecccccccccccccccccccc------
Confidence            35799999999999999999887543       2788     99999999999999999999999999999999      


Q ss_pred             CCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh--------ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhh
Q 048145          100 KNPLVVENKLGETPLYRAASVGKIEALRYFAEQ--------VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIH  171 (578)
Q Consensus       100 ~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~--------~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~  171 (578)
                        +++.+|..|.||||+|+..|+.++++.+...        ..+..+.++.+.+.        ..+..            
T Consensus        99 --d~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~------------  156 (277)
T d2fo1e1          99 --DPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVA--------HNEGR------------  156 (277)
T ss_dssp             --CSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHH--------HSCST------------
T ss_pred             --ccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHH--------hcccc------------
Confidence              8999999999999999999999999988765        34677788888876        22220            


Q ss_pred             HHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccc
Q 048145          172 KKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQEN  251 (578)
Q Consensus       172 ~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~  251 (578)
                       .....++.+.++.......                                                     .....+.
T Consensus       157 -~~~~~~~~~~~~~~~~~~~-----------------------------------------------------~~~~~~~  182 (277)
T d2fo1e1         157 -DQVASAKLLVEKGAKVDYD-----------------------------------------------------GAARKDS  182 (277)
T ss_dssp             -THHHHHHHHHHHTCCSSCC-----------------------------------------------------SGGGTSS
T ss_pred             -ccccccccccccccccccc-----------------------------------------------------ccccccc
Confidence             0033344443332211110                                                     0001111


Q ss_pred             cccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcc
Q 048145          252 DTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKI  331 (578)
Q Consensus       252 ~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~  331 (578)
                      .+..|.|       |||+++..|+.++++.++...+.+++..|..|+||||+|+++|+.+++++|+     +.|+++|.+
T Consensus       183 ~~~~g~t-------~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll-----~~gadin~~  250 (277)
T d2fo1e1         183 EKYKGRT-------ALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLI-----QQGASVEAV  250 (277)
T ss_dssp             SSCCCCC-------THHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH-----HTTCCSSCC
T ss_pred             cccCCCC-------ccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHH-----HCcCCCCCc
Confidence            2234444       9999999999999999888899999999999999999999999999999999     567789999


Q ss_pred             cCCCCchhhHHHhcccc
Q 048145          332 DNEGYTILHQVADMKYY  348 (578)
Q Consensus       332 d~~G~T~LhlA~~~~~~  348 (578)
                      |++|+||||+|++.|+.
T Consensus       251 d~~G~T~L~~A~~~~~~  267 (277)
T d2fo1e1         251 DATDHTARQLAQANNHH  267 (277)
T ss_dssp             CSSSCCHHHHHHHTTCH
T ss_pred             CCCCCCHHHHHHHcCCH
Confidence            99999999999999975

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.9e-32  Score=263.32  Aligned_cols=197  Identities=17%  Similarity=0.160  Sum_probs=136.9

Q ss_pred             hccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccC
Q 048145           63 MQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTA  137 (578)
Q Consensus        63 ~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~  137 (578)
                      +..|++|+||||+||+.|+.+++++|+++|++.     ..++.+|..|+||||+|+.+|+.+++++|++.     ..|.+
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~-----~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~   77 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGH-----EYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERG   77 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTS-----GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTT
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCc-----ccccCcCCCCCCccchHHhhcccccccccccccccccccccc
Confidence            456789999999999999999999999998721     24778899999999999999999999999998     57899


Q ss_pred             CccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccc
Q 048145          138 AISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVD  217 (578)
Q Consensus       138 g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  217 (578)
                      |.||||+|+        ..|+                .++++.|++.+..........     ....             
T Consensus        78 g~tpL~~A~--------~~~~----------------~~~~~~Ll~~~~~~~~~~~~~-----~~~~-------------  115 (255)
T d1oy3d_          78 GHTALHLAC--------RVRA----------------HTCACVLLQPRPSHPRDASDT-----YLTQ-------------  115 (255)
T ss_dssp             SCCHHHHHT--------TTTC----------------HHHHHHHSSSCCSSCCCC-------------------------
T ss_pred             cchhhhhhh--------ccCc----------------hHHHHHHHhhccchhcccchh-----hhhH-------------
Confidence            999999999        7777                899999988765432210000     0000             


Q ss_pred             cchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCC
Q 048145          218 VSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKG  297 (578)
Q Consensus       218 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G  297 (578)
                        ..                            .........       ++..............+....+.+++.+|.+|
T Consensus       116 --~~----------------------------~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g  158 (255)
T d1oy3d_         116 --SQ----------------------------DCTPDTSHA-------PAAVDSQPNPENEEEPRDEDWRLQLEAENYDG  158 (255)
T ss_dssp             -----------------------------------------------------------------CCCGGGGTTCCCTTS
T ss_pred             --Hh----------------------------hhcccchHH-------HHHHHhhcchhHHHHHHhhhcCcccccccccC
Confidence              00                            000000011       22222222233333344444677889999999


Q ss_pred             ChHHHHHHHhCcHHHHHHHHHhhchhhhhhhh-cccCCCCchhhHHHhcccc
Q 048145          298 QNILHVAIMYRQLEIFEIIKEKMQLSLAEWAL-KIDNEGYTILHQVADMKYY  348 (578)
Q Consensus       298 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~-~~d~~G~T~LhlA~~~~~~  348 (578)
                      +||||+|+++++.+++++|+     +.+.+.+ .++..|+||||+|++.++.
T Consensus       159 ~TpLh~A~~~~~~~~v~~Ll-----~~~~~~~~~~~~~g~TpL~~A~~~~~~  205 (255)
T d1oy3d_         159 HTPLHVAVIHKDAEMVRLLR-----DAGADLNKPEPTCGRTPLHLAVEAQAA  205 (255)
T ss_dssp             CCHHHHHHHTTCHHHHHHHH-----HHTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred             cccccccccccccccccchh-----cccccccccccccccccccccccccHH
Confidence            99999999999999999999     3444455 4578899999999999875

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=4.8e-33  Score=273.10  Aligned_cols=231  Identities=19%  Similarity=0.207  Sum_probs=181.4

Q ss_pred             CCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCC
Q 048145           28 FNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVEN  107 (578)
Q Consensus        28 ~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n  107 (578)
                      .++.||||.||..|+.++|++|+++ |++     ++.+|.+|.||||+|+..|+.++|++|+++|+        +....+
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~-Gad-----vn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~--------~~~~~~  103 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLER-GAD-----INYANVDGLTALHQACIDDNVDMVKFLVENGA--------NINQPD  103 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHH-CCC-----TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTC--------CTTCCC
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHC-CCC-----CCccCCCCCcHHHHHHhcCCceeeeeeccccc--------cccccc
Confidence            3457999999999999999999999 999     99999999999999999999999999999999        778889


Q ss_pred             CCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHH
Q 048145          108 KLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLV  182 (578)
Q Consensus       108 ~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll  182 (578)
                      ..+.||||.|+..|+.++++.|++.     ..+..|.+|+++|+        ..|.                .+.++.++
T Consensus       104 ~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~--------~~~~----------------~~~~~~ll  159 (291)
T d1s70b_         104 NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAE--------EEAM----------------EELLQNEV  159 (291)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC--------SHHH----------------HHHHHHHH
T ss_pred             ccccccccccccccccchhhcccccCcccccccccCcccccccc--------cccc----------------chhccccc
Confidence            9999999999999999999999987     56789999999998        4444                45555555


Q ss_pred             hcc-ccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccc
Q 048145          183 EKR-IDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSM  261 (578)
Q Consensus       183 ~~g-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~  261 (578)
                      +.. .+........                    ...........+..               .......       .+.
T Consensus       160 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~---------------~~~~~~~-------~~~  197 (291)
T d1s70b_         160 NRQGVDIEAARKEE--------------------ERIMLRDARQWLNS---------------GHINDVR-------HAK  197 (291)
T ss_dssp             HHHTCCHHHHHHHH--------------------HHHHHHHHHHHHHH---------------TCCCCCC-------CTT
T ss_pred             cccccccccccccc--------------------cccccccchhhhcc---------------ccccccc-------ccC
Confidence            432 2111110000                    00000000000000               0000111       223


Q ss_pred             cchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhH
Q 048145          262 RTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQ  341 (578)
Q Consensus       262 ~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~Lhl  341 (578)
                      .|.||||.|+..|+.++++.|++ .+++++.+|.+|+||||+|++.|+.++|++|+     +.|++++.+|++|+||||+
T Consensus       198 ~g~t~L~~a~~~~~~~~~~~Ll~-~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl-----~~Gadv~~~d~~G~TaL~~  271 (291)
T d1s70b_         198 SGGTALHVAAAKGYTEVLKLLIQ-ARYDVNIKDYDGWTPLHAAAHWGKEEACRILV-----ENLCDMEAVNKVGQTAFDV  271 (291)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-----HTTCCTTCCCTTSCCTTTS
T ss_pred             CCCChhhHHHHcCChhhhccccc-ceecccccccCCCCHHHHHHHcCCHHHHHHHH-----HCCCCCCCcCCCCCCHHHH
Confidence            34449999999999999999998 88999999999999999999999999999999     5677899999999999999


Q ss_pred             HHh
Q 048145          342 VAD  344 (578)
Q Consensus       342 A~~  344 (578)
                      |++
T Consensus       272 A~e  274 (291)
T d1s70b_         272 ADE  274 (291)
T ss_dssp             CCS
T ss_pred             HHH
Confidence            986

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.2e-30  Score=244.15  Aligned_cols=210  Identities=16%  Similarity=0.165  Sum_probs=177.4

Q ss_pred             CCCcHHHHHHhcCChHHHHHHHcc---CCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCccc
Q 048145           29 NGECAIHVAAAMEDPELIKKFLGR---LPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVV  105 (578)
Q Consensus        29 ~g~T~Lh~Aa~~g~~~~v~~Ll~~---~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~  105 (578)
                      +|+||||+||+.|+.++|+.|++.   .+++     ++.+|.+|+||||+|+..|+.++++.|+++|+        +.+.
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~-----in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga--------~~~~   68 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-----LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA--------SPMA   68 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC-----SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC--------CTTC
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCC-----CCccCCCCCccceehhcccccccccccccccc--------cccc
Confidence            699999999999999999999863   4788     99999999999999999999999999999999        8889


Q ss_pred             CCCCCCCHHHHHHHcCcHHHHHHHHHh---------ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHH
Q 048145          106 ENKLGETPLYRAASVGKIEALRYFAEQ---------VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVA  176 (578)
Q Consensus       106 ~n~~g~TpLh~A~~~g~~~iv~~Ll~~---------~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~  176 (578)
                      .+..|.++++.|...++.++++.+...         .......++|+.+.        ....                ..
T Consensus        69 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~~----------------~~  124 (228)
T d1k1aa_          69 LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV--------NTEC----------------QE  124 (228)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHH--------HHTC----------------HH
T ss_pred             cccccccccccccccccccchhhhhhcccccccccccccccccccccccc--------cccc----------------ch
Confidence            999999999999999999999988776         23456778888776        2222                34


Q ss_pred             HHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCccccccccccccc
Q 048145          177 LVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKD  256 (578)
Q Consensus       177 ~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g  256 (578)
                      ..+.|.....+....                                                            .+..+
T Consensus       125 ~~~~l~~~~~~~~~~------------------------------------------------------------~~~~~  144 (228)
T d1k1aa_         125 TVQLLLERGADIDAV------------------------------------------------------------DIKSG  144 (228)
T ss_dssp             HHHHHHHTTCCTTCC------------------------------------------------------------CTTTC
T ss_pred             hhhhhhccccccccc------------------------------------------------------------cccch
Confidence            455555443322111                                                            11234


Q ss_pred             ccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCC
Q 048145          257 MTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGY  336 (578)
Q Consensus       257 ~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~  336 (578)
                      .+       ||+.|+..+..++++.+++ .+..++.+|.+|+||||+|+++|+.+++++|+     +.|+++|.+|.+|+
T Consensus       145 ~~-------~l~~a~~~~~~~~~~~~~~-~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-----~~Gad~n~~d~~G~  211 (228)
T d1k1aa_         145 RS-------PLIHAVENNSLSMVQLLLQ-HGANVNAQMYSGSSALHSASGRGLLPLVRTLV-----RSGADSSLKNCHND  211 (228)
T ss_dssp             CC-------HHHHHHHTTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHH-----HTTCCTTCCCTTSC
T ss_pred             hh-------HHHHHHHhhhhhhhhhhhh-hccccccccccCcchHHHHHHcCCHHHHHHHH-----HCCCCCCCCCCCCC
Confidence            44       9999999999999999998 88899999999999999999999999999999     56778999999999


Q ss_pred             chhhHHHhcccc
Q 048145          337 TILHQVADMKYY  348 (578)
Q Consensus       337 T~LhlA~~~~~~  348 (578)
                      ||||+|+++|+.
T Consensus       212 TpL~~A~~~~~~  223 (228)
T d1k1aa_         212 TPLMVARSRRVI  223 (228)
T ss_dssp             CTTTTCSSHHHH
T ss_pred             CHHHHHHhCCCc
Confidence            999999998854

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.5e-31  Score=251.32  Aligned_cols=187  Identities=17%  Similarity=0.202  Sum_probs=161.2

Q ss_pred             CCCcHHHHHHhcCChHHHHHHHcc---CCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCccc
Q 048145           29 NGECAIHVAAAMEDPELIKKFLGR---LPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVV  105 (578)
Q Consensus        29 ~g~T~Lh~Aa~~g~~~~v~~Ll~~---~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~  105 (578)
                      +|+||||+|+..|+.++++.|++.   .+.+     ++.+|.+|+||||+||..|+.+++++|+++|+        +++.
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~-----in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~--------d~~~   67 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAF-----LNFQNNLQQTPLHLAVITNQPEIAEALLGAGC--------DPEL   67 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCC-----CCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCC--------CSCC
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCC-----cccCCCCCCccccccccccccccccccccccc--------cccc
Confidence            699999999999997666655543   2677     99999999999999999999999999999999        8999


Q ss_pred             CCCCCCCHHHHHHHcCcHHHHHHHHHh-----------ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHH
Q 048145          106 ENKLGETPLYRAASVGKIEALRYFAEQ-----------VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKA  174 (578)
Q Consensus       106 ~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----------~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~  174 (578)
                      +|..|.||||.|+.+|+.++++.|++.           .....|.||||.|+        ..|+                
T Consensus        68 ~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~--------~~~~----------------  123 (221)
T d1iknd_          68 RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS--------IHGY----------------  123 (221)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHH--------HTTC----------------
T ss_pred             cccccccccccccccccccccchhhhhcccccccccccccccccchhhhHHh--------hcCC----------------
Confidence            999999999999999999999999986           23467899999999        6677                


Q ss_pred             HHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCccccccccccc
Q 048145          175 VALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTT  254 (578)
Q Consensus       175 ~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~  254 (578)
                      .+++++|++.|...+...                                                            +.
T Consensus       124 ~~~~~~l~~~~~~~~~~~------------------------------------------------------------~~  143 (221)
T d1iknd_         124 LGIVELLVSLGADVNAQE------------------------------------------------------------PC  143 (221)
T ss_dssp             HHHHHHHHHHTCCTTCCC------------------------------------------------------------TT
T ss_pred             hhheeeecccCccccccc------------------------------------------------------------cc
Confidence            888999988877654330                                                            12


Q ss_pred             ccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhc
Q 048145          255 KDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQ  321 (578)
Q Consensus       255 ~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~  321 (578)
                      +|.|       |||+|++.|+.+++++|++ +|++++.+|.+|+||||+|+++++.+++++|+ +..
T Consensus       144 ~G~T-------~L~~A~~~g~~~~v~~Ll~-~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~-~~~  201 (221)
T d1iknd_         144 NGRT-------ALHLAVDLQNPDLVSLLLK-CGADVNRVTYQGYSPYQLTWGRPSTRIQQQLG-QLT  201 (221)
T ss_dssp             TCCC-------HHHHHHHTTCHHHHHHHHT-TTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHH-TTS
T ss_pred             CCCC-------ccccccccccHHHHHHHHh-cCCcccccCCCCCCHHHHHHHCCCHHHHHHHH-HcC
Confidence            4555       9999999999999999998 88999999999999999999999999999998 443

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.6e-29  Score=246.71  Aligned_cols=257  Identities=16%  Similarity=0.188  Sum_probs=162.4

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN   80 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g   80 (578)
                      |+..|+.+.++.++++  +..+....+..|.||||+|+..|+.+++++|++. +..     ....+..+.+|.++|+..+
T Consensus        12 Ai~~~~~e~vk~Ll~~--G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~-~~~-----~~~~~~~~~~~~~~~~~~~   83 (285)
T d1wdya_          12 AVQNEDVDLVQQLLEG--GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH-GAD-----PVLRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHTTCHHHHHHHHHT--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCC-----TTCCCTTCCCHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHC--CCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccc-ccc-----ccccccccchhhHHHhhcC
Confidence            3445555544444443  2222223334455555555555555555555555 444     4445555555555555555


Q ss_pred             CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh---------------ccccCCccHHHHH
Q 048145           81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ---------------VNQTAAISILSSK  145 (578)
Q Consensus        81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~---------------~~~~~g~t~Lh~A  145 (578)
                      ..+....+++...        +....+..|.|+++.|+..|+...++.+++.               ..+..|.||||+|
T Consensus        84 ~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A  155 (285)
T d1wdya_          84 SVKLLKLFLSKGA--------DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA  155 (285)
T ss_dssp             CHHHHHHHHHTTC--------CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHH
T ss_pred             Cccccchhhhhcc--------cccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHH
Confidence            5555555555544        4445566677777777777777777777664               2345677777777


Q ss_pred             HHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhc-cccccccccCCCCCCchhhcccCCCCccccccccchhhHH
Q 048145          146 MYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEK-RIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWV  224 (578)
Q Consensus       146 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  224 (578)
                      +        ..|+                .+++++|+++ |++++..+.   .+.++.......      .......+++
T Consensus       156 ~--------~~~~----------------~~~~~~Ll~~~~~~i~~~~~---~~~~~~~~~~~~------~~~~~~~~i~  202 (285)
T d1wdya_         156 A--------EKGH----------------VEVLKILLDEMGADVNACDN---MGRNALIHALLS------SDDSDVEAIT  202 (285)
T ss_dssp             H--------HHTC----------------HHHHHHHHHTSCCCTTCCCT---TSCCHHHHHHHC------SCTTTHHHHH
T ss_pred             H--------HcCC----------------HHHHHHHHhccCCCcccccC---CCCccccccccc------ccchHHHHHH
Confidence            7        5555                8999999975 666655422   222222111100      0122233445


Q ss_pred             HHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHH
Q 048145          225 ELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVA  304 (578)
Q Consensus       225 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A  304 (578)
                      +.++..               ..+.+.+|..|.|       |||.|++.|+.+++++||+.+|.+++.+|.+|+||||+|
T Consensus       203 ~~Li~~---------------ga~~n~~~~~g~t-------~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A  260 (285)
T d1wdya_         203 HLLLDH---------------GADVNVRGERGKT-------PLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA  260 (285)
T ss_dssp             HHHHHT---------------TCCSSCCCTTSCC-------HHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHH
T ss_pred             HHHHHC---------------CCCCCccCCCCCC-------ccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHH
Confidence            544422               1222334445555       999999999999999999878999999999999999999


Q ss_pred             HHhCcHHHHHHHHHhhchhhhhhhhcccC
Q 048145          305 IMYRQLEIFEIIKEKMQLSLAEWALKIDN  333 (578)
Q Consensus       305 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~  333 (578)
                      +++|+.+++++|+     +.|+++|.+|.
T Consensus       261 ~~~~~~eiv~~Ll-----~~GAd~n~~d~  284 (285)
T d1wdya_         261 VELKLKKIAELLC-----KRGASTDCGDL  284 (285)
T ss_dssp             HHTTCHHHHHHHH-----HHSSCSCCSSC
T ss_pred             HHcCCHHHHHHHH-----HCCCCCCcccC
Confidence            9999999999999     68888999884

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.3e-29  Score=239.08  Aligned_cols=212  Identities=18%  Similarity=0.202  Sum_probs=181.6

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN   80 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g   80 (578)
                      ||.+|+.+.++++++.  .+...+.+|.+|+||||+|+..|+.++|++|+++ +++  .+..+..|..|.||+|+|+..+
T Consensus         7 A~~~g~~~~v~~Ll~~--~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~-ga~--~~~~~~~~~~~~~~~~~~~~~~   81 (229)
T d1ixva_           7 ACMENEFFKVQELLHS--KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK-MEN--VNLDDYPDDSGWTPFHIACSVG   81 (229)
T ss_dssp             HHHHTCHHHHHHHHHH--CGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTT-CTT--CCGGGCCCTTSCCHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHc--CCCcccccCCCCCCHHHHHHHcCCccccchhhhh-hcc--cccccccccccccccccccccc
Confidence            6889999999999987  4567789999999999999999999999999998 776  1223456788999999999999


Q ss_pred             CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhc
Q 048145           81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVI  155 (578)
Q Consensus        81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~  155 (578)
                      ..++++.++..+..      ......+..+.||++.++..++.++++.|++.     ..+.+|.||||+|+        .
T Consensus        82 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~--------~  147 (229)
T d1ixva_          82 NLEVVKSLYDRPLK------PDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAA--------S  147 (229)
T ss_dssp             CHHHHHHHHSSSSC------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH--------H
T ss_pred             cccccccccccccc------ccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhh--------h
Confidence            99999999998872      24556788899999999999999999999988     56789999999999        6


Q ss_pred             cCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCc
Q 048145          156 QGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCT  235 (578)
Q Consensus       156 ~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  235 (578)
                      .|+                .+++++|++++...                                               
T Consensus       148 ~~~----------------~~~~~~Ll~~~~~~-----------------------------------------------  164 (229)
T d1ixva_         148 VGS----------------LKLIELLCGLGKSA-----------------------------------------------  164 (229)
T ss_dssp             HTC----------------HHHHHHHHTTTCCC-----------------------------------------------
T ss_pred             ccc----------------cccccccccccccc-----------------------------------------------
Confidence            677                89999999876421                                               


Q ss_pred             cccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHH
Q 048145          236 NKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEI  315 (578)
Q Consensus       236 ~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~  315 (578)
                                   ++..|.+|+|       |||+|+++|+.+++++||++.|++++.+|.+|+||||+|+.   .+++++
T Consensus       165 -------------in~~d~~g~T-------pLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~---~~~~~~  221 (229)
T d1ixva_         165 -------------VNWQDKQGWT-------PLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKF  221 (229)
T ss_dssp             -------------SCCCCTTSCC-------HHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC---HHHHHH
T ss_pred             -------------ccccccccCC-------chhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh---HHHHHH
Confidence                         1122345666       99999999999999999987899999999999999999984   589999


Q ss_pred             HH
Q 048145          316 IK  317 (578)
Q Consensus       316 Ll  317 (578)
                      |+
T Consensus       222 Ll  223 (229)
T d1ixva_         222 FL  223 (229)
T ss_dssp             HH
T ss_pred             HH
Confidence            99

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.1e-28  Score=240.67  Aligned_cols=246  Identities=17%  Similarity=0.229  Sum_probs=198.1

Q ss_pred             CCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccC-CCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCC
Q 048145           29 NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTD-DNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVEN  107 (578)
Q Consensus        29 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d-~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n  107 (578)
                      +++|+||.|++.|+.++|++|+++ |++     ++.++ ..|+||||+|+..|+.+++++|++.+.        .....+
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~-G~d-----in~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~--------~~~~~~   69 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEG-GAN-----VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA--------DPVLRK   69 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHT-TCC-----TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC--------CTTCCC
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHC-CCC-----cCccCCCCCCCHHHHHHHcCCHHHhhhhccccc--------cccccc
Confidence            468999999999999999999999 999     98775 579999999999999999999999999        788888


Q ss_pred             CCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHH
Q 048145          108 KLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLV  182 (578)
Q Consensus       108 ~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll  182 (578)
                      ..+.+|.+.|+..+..+.....++.     ..+..|.++++.|+        ..|+                ...++.++
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~--------~~~~----------------~~~~~~~~  125 (285)
T d1wdya_          70 KNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAA--------VYGK----------------VKALKFLY  125 (285)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHH--------HTTC----------------HHHHHHHH
T ss_pred             cccchhhHHHhhcCCccccchhhhhcccccccccCCCchhHHHH--------Hhcc----------------hhhhhhhh
Confidence            8999999999999999999999987     45688999999999        6676                66777777


Q ss_pred             hcccccccc-------ccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccc
Q 048145          183 EKRIDDCAT-------HEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTK  255 (578)
Q Consensus       183 ~~g~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~  255 (578)
                      +...+....       ......|.|++|+|+          ..+..+.++.++...              ..+++..+..
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~----------~~~~~~~~~~Ll~~~--------------~~~i~~~~~~  181 (285)
T d1wdya_         126 KRGANVNLRRKTKEDQERLRKGGATALMDAA----------EKGHVEVLKILLDEM--------------GADVNACDNM  181 (285)
T ss_dssp             HTTCCTTCCCCCCHHHHHTTCCCCCHHHHHH----------HHTCHHHHHHHHHTS--------------CCCTTCCCTT
T ss_pred             hhcccccccccchhhhhhhcccCchHHHHHH----------HcCCHHHHHHHHhcc--------------CCCcccccCC
Confidence            665544332       223346788888874          444566666665321              1222333344


Q ss_pred             cccccccchhHHHHHH----hcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcc
Q 048145          256 DMTSSMRTMRILLFAV----SNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKI  331 (578)
Q Consensus       256 g~t~~~~g~~pLh~Aa----~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~  331 (578)
                      +.+       +++.+.    ..+..+++++|++ .|++++.+|..|+||||.|++.|+.+++++|++..    |.++|.+
T Consensus       182 ~~~-------~~~~~~~~~~~~~~~~i~~~Li~-~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~----g~din~~  249 (285)
T d1wdya_         182 GRN-------ALIHALLSSDDSDVEAITHLLLD-HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE----HIEINDT  249 (285)
T ss_dssp             SCC-------HHHHHHHCSCTTTHHHHHHHHHH-TTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSS----SCCTTCC
T ss_pred             CCc-------ccccccccccchHHHHHHHHHHH-CCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcC----CCCCcCC
Confidence            444       665543    3456689999998 79999999999999999999999999999999433    5579999


Q ss_pred             cCCCCchhhHHHhcccc
Q 048145          332 DNEGYTILHQVADMKYY  348 (578)
Q Consensus       332 d~~G~T~LhlA~~~~~~  348 (578)
                      |.+|+||||+|+++++.
T Consensus       250 d~~G~TpL~~A~~~~~~  266 (285)
T d1wdya_         250 DSDGKTALLLAVELKLK  266 (285)
T ss_dssp             CTTSCCHHHHHHHTTCH
T ss_pred             CCCCCCHHHHHHHcCCH
Confidence            99999999999999975

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.96  E-value=3.8e-29  Score=244.98  Aligned_cols=203  Identities=22%  Similarity=0.277  Sum_probs=177.8

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN   80 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g   80 (578)
                      ||..|+.+.|+.+|++   +..++..|.+|.||||+|+..|+.++|++|+++ +.+     ....+..+.||||+|+..|
T Consensus        47 A~~~G~~~~v~~Ll~~---Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~-~~~-----~~~~~~~~~~~L~~a~~~~  117 (291)
T d1s70b_          47 ACSSGDTEEVLRLLER---GADINYANVDGLTALHQACIDDNVDMVKFLVEN-GAN-----INQPDNEGWIPLHAAASCG  117 (291)
T ss_dssp             HHHHTCHHHHHHHHHH---CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT-TCC-----TTCCCTTSCCHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHC---CCCCCccCCCCCcHHHHHHhcCCceeeeeeccc-ccc-----ccccccccccccccccccc
Confidence            6788999999888887   345678899999999999999999999999999 888     8889999999999999999


Q ss_pred             CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh----------------------------
Q 048145           81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ----------------------------  132 (578)
Q Consensus        81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~----------------------------  132 (578)
                      +.++++.|+++|.        ..+..|..|.+|+++|+..++.+.++.++..                            
T Consensus       118 ~~~~~~~l~~~~~--------~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (291)
T d1s70b_         118 YLDIAEYLISQGA--------HVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGH  189 (291)
T ss_dssp             CHHHHHHHHHTTC--------CTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ccchhhcccccCc--------ccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccc
Confidence            9999999999998        7888999999999999999999999998864                            


Q ss_pred             ----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCC
Q 048145          133 ----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGK  208 (578)
Q Consensus       133 ----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~  208 (578)
                          ..+..|.||||+|+        ..|+                .++++.|+++|++++..                 
T Consensus       190 ~~~~~~~~~g~t~L~~a~--------~~~~----------------~~~~~~Ll~~g~din~~-----------------  228 (291)
T d1s70b_         190 INDVRHAKSGGTALHVAA--------AKGY----------------TEVLKLLIQARYDVNIK-----------------  228 (291)
T ss_dssp             CCCCCCTTTCCCHHHHHH--------HHTC----------------HHHHHHHHTTTCCTTCC-----------------
T ss_pred             cccccccCCCCChhhHHH--------HcCC----------------hhhhcccccceeccccc-----------------
Confidence                23467788888888        5566                78888888888766433                 


Q ss_pred             CCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCC
Q 048145          209 GNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQ  288 (578)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~  288 (578)
                                                                  +..|.|       |||+|++.|+.++|++|++ +|+
T Consensus       229 --------------------------------------------~~~g~T-------pL~~A~~~g~~~iv~lLl~-~Ga  256 (291)
T d1s70b_         229 --------------------------------------------DYDGWT-------PLHAAAHWGKEEACRILVE-NLC  256 (291)
T ss_dssp             --------------------------------------------CTTCCC-------HHHHHHHTTCHHHHHHHHH-TTC
T ss_pred             --------------------------------------------ccCCCC-------HHHHHHHcCCHHHHHHHHH-CCC
Confidence                                                        235566       9999999999999999998 899


Q ss_pred             cccccccCCChHHHHHHHhCcHHHHHHHH
Q 048145          289 TLDNVNEKGQNILHVAIMYRQLEIFEIIK  317 (578)
Q Consensus       289 ~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll  317 (578)
                      +++.+|++|+||||+|++    +++++|.
T Consensus       257 dv~~~d~~G~TaL~~A~e----~~~~~L~  281 (291)
T d1s70b_         257 DMEAVNKVGQTAFDVADE----DILGYLE  281 (291)
T ss_dssp             CTTCCCTTSCCTTTSCCS----GGGHHHH
T ss_pred             CCCCcCCCCCCHHHHHHH----HHHHHHH
Confidence            999999999999999975    6777776

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.4e-28  Score=230.85  Aligned_cols=181  Identities=16%  Similarity=0.171  Sum_probs=146.6

Q ss_pred             CCChHHHHHHHcCCHHH----HHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCC
Q 048145           68 NGNTAVHALATINNVDV----AKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAA  138 (578)
Q Consensus        68 ~G~TpLh~Aa~~g~~~i----v~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g  138 (578)
                      +|+||||+|+..|+.++    ++.+...|+        +++.+|.+|+||||+|+..|+.+++++|++.     ..|..|
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~--------~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g   72 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLA--------FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRG   72 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CC--------CCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTC
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCC--------CcccCCCCCCcccccccccccccccccccccccccccccccc
Confidence            59999999999999654    455556676        8999999999999999999999999999997     678999


Q ss_pred             ccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCcccccccc
Q 048145          139 ISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDV  218 (578)
Q Consensus       139 ~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  218 (578)
                      .||||+++        ..|.                .++++.|++.+........                         
T Consensus        73 ~t~l~~~~--------~~~~----------------~~~~~~l~~~~~~~~~~~~-------------------------  103 (221)
T d1iknd_          73 NTPLHLAC--------EQGC----------------LASVGVLTQSCTTPHLHSI-------------------------  103 (221)
T ss_dssp             CCHHHHHH--------HHTC----------------HHHHHHHHHSTTTTSSSCG-------------------------
T ss_pred             cccccccc--------cccc----------------ccccchhhhhccccccccc-------------------------
Confidence            99999999        5666                7889999987665432200                         


Q ss_pred             chhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCccccc-ccCC
Q 048145          219 SAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNV-NEKG  297 (578)
Q Consensus       219 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~-d~~G  297 (578)
                                                    .......|.|       |||.|+..|+.+++++|++ .+..++.. +.+|
T Consensus       104 ------------------------------~~~~~~~~~t-------~l~~a~~~~~~~~~~~l~~-~~~~~~~~~~~~G  145 (221)
T d1iknd_         104 ------------------------------LKATNYNGHT-------CLHLASIHGYLGIVELLVS-LGADVNAQEPCNG  145 (221)
T ss_dssp             ------------------------------GGCCCTTCCC-------HHHHHHHTTCHHHHHHHHH-HTCCTTCCCTTTC
T ss_pred             ------------------------------ccccccccch-------hhhHHhhcCChhheeeecc-cCcccccccccCC
Confidence                                          0111123445       9999999999999999998 55556554 5689


Q ss_pred             ChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcccc
Q 048145          298 QNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYY  348 (578)
Q Consensus       298 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~  348 (578)
                      +||||+|++.|+.+++++|+     +.|++++.+|.+|+||||+|+..++.
T Consensus       146 ~T~L~~A~~~g~~~~v~~Ll-----~~gad~~~~~~~G~tpl~~A~~~~~~  191 (221)
T d1iknd_         146 RTALHLAVDLQNPDLVSLLL-----KCGADVNRVTYQGYSPYQLTWGRPST  191 (221)
T ss_dssp             CCHHHHHHHTTCHHHHHHHH-----TTTCCSCCCCTTCCCGGGGCTTSSCH
T ss_pred             CCccccccccccHHHHHHHH-----hcCCcccccCCCCCCHHHHHHHCCCH
Confidence            99999999999999999999     56778999999999999999998854

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=1.2e-27  Score=222.18  Aligned_cols=194  Identities=17%  Similarity=0.144  Sum_probs=161.8

Q ss_pred             hHHHHHHHccCCCchhhhhhhc-cCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcC
Q 048145           43 PELIKKFLGRLPVEKRLEALMQ-TDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVG  121 (578)
Q Consensus        43 ~~~v~~Ll~~~~~~~~~~~l~~-~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g  121 (578)
                      .|+|++|+++ |++     ++. .|.+|+||||+||..|+.+++++|++.|+        +++.++..+.++++.++..+
T Consensus         2 ~~~v~~Ll~~-g~d-----in~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~--------~~n~~~~~~~~~~~~~~~~~   67 (209)
T d1ot8a_           2 AQVISDLLAQ-GAE-----LNATMDKTGETSLHLAARFARADAAKRLLDAGA--------DANSQDNTGRTPLHAAVAAD   67 (209)
T ss_dssp             HHHHHHHHHH-HHH-----HHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTC--------CTTCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHHHC-CCC-----cCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcc--------cccccccccccccccccccc
Confidence            5899999999 888     987 58999999999999999999999999999        88999999999999999999


Q ss_pred             cHHHHHHHHHh------ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCC
Q 048145          122 KIEALRYFAEQ------VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKP  195 (578)
Q Consensus       122 ~~~iv~~Ll~~------~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~  195 (578)
                      +..........      .....|.++.+.+.        ....                ....+.|.+.+.+++..    
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~----------------~~~~~~L~~~~~~~~~~----  119 (209)
T d1ot8a_          68 AMGVFQILLRNRATNLNARMHDGTTPLILAA--------RLAI----------------EGMVEDLITADADINAA----  119 (209)
T ss_dssp             CHHHHHHHHTCTTCCTTCCCTTCCCHHHHHH--------HTTC----------------TTHHHHHHHTTCCTTCB----
T ss_pred             ccccccccccccccccccccccccccccccc--------cccc----------------hhhhhhhhhhccccccc----
Confidence            88877666655      23455667766665        2233                45566666666554322    


Q ss_pred             CCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCH
Q 048145          196 TPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGI  275 (578)
Q Consensus       196 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~  275 (578)
                                                                               +..|.|       |||.|+.+|.
T Consensus       120 ---------------------------------------------------------~~~~~t-------~l~~~~~~~~  135 (209)
T d1ot8a_         120 ---------------------------------------------------------DNSGKT-------ALHWAAAVNN  135 (209)
T ss_dssp             ---------------------------------------------------------CTTSCB-------HHHHHHHTTC
T ss_pred             ---------------------------------------------------------CCCCCC-------cchhhcccCc
Confidence                                                                     235556       9999999999


Q ss_pred             HHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHHhcccc
Q 048145          276 IEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVADMKYY  348 (578)
Q Consensus       276 ~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~~~~~~  348 (578)
                      .++++.+++ .+.+++..|.+|.||||+|+.+|+.+++++|+     +.|++++.+|.+|+||||+|++.|+.
T Consensus       136 ~~~~~~l~~-~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll-----~~gad~n~~d~~g~Tpl~~A~~~~~~  202 (209)
T d1ot8a_         136 TEAVNILLM-HHANRDAQDDKDETPLFLAAREGSYEASKALL-----DNFANREITDHMDRLPRDVASERLHH  202 (209)
T ss_dssp             HHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-----HTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             ceeeeeecc-ccccccccccccccccchhccccHHHHHHHHH-----HCCCCCCCcCCCCCCHHHHHHHcCCH
Confidence            999999998 78889999999999999999999999999999     56778999999999999999999976

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.95  E-value=1.7e-29  Score=253.40  Aligned_cols=235  Identities=11%  Similarity=0.081  Sum_probs=163.6

Q ss_pred             hccCCCCCCcHHHHHHhcCChHHHHH---HHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCC
Q 048145           23 LGYRTFNGECAIHVAAAMEDPELIKK---FLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDAD   99 (578)
Q Consensus        23 ~~~~~~~g~T~Lh~Aa~~g~~~~v~~---Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~   99 (578)
                      ++.++..|.||||+||++|+.++++.   |++. +++     ++.+|.+|+||||+||+.||.++|++|++.|+      
T Consensus        83 ~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~-~~~-----in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~------  150 (346)
T d2ajaa1          83 AHKKGIKSEVICFVAAITGCSSALDTLCLLLTS-DEI-----VKVIQAENYQAFRLAAENGHLHVLNRLCELAP------  150 (346)
T ss_dssp             HHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--C-CSS-----CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCT------
T ss_pred             HHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhC-CCc-----ccccCCCCCCHHHHHHHCCCHHHHHHHHHcCC------
Confidence            34567789999999999999888776   5666 888     99999999999999999999999999999999      


Q ss_pred             CCCcccCC--CCCCCHHHHHHHcCcHHHHHHHHHh--------ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhh
Q 048145          100 KNPLVVEN--KLGETPLYRAASVGKIEALRYFAEQ--------VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQ  169 (578)
Q Consensus       100 ~~~~~~~n--~~g~TpLh~A~~~g~~~iv~~Ll~~--------~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~  169 (578)
                        +++..+  .+|.||||+|+.+||.++|++|++.        ..+.+|.||+|.|+        .+|+           
T Consensus       151 --~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~--------~~g~-----------  209 (346)
T d2ajaa1         151 --TEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAV--------GRGH-----------  209 (346)
T ss_dssp             --TTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHS--------TTCC-----------
T ss_pred             --CccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHh--------hcCH-----------
Confidence              777665  4699999999999999999999986        23356778888888        8898           


Q ss_pred             hhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcC--CccccccccCcccc
Q 048145          170 IHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKG--CTNKAHVDQYPQAV  247 (578)
Q Consensus       170 ~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~l~~~~~~~~  247 (578)
                           .+++++|+++|++++..          .+.+...+..          .....+......  .....+....... 
T Consensus       210 -----~~iv~~Ll~~ga~~~~~----------~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~a~~~~-  263 (346)
T d2ajaa1         210 -----HNVINFLLDCPVMLAYA----------EIHEFEYGEK----------YVNPFIARHVNRLKEMHDAFKLSNPDG-  263 (346)
T ss_dssp             -----HHHHHHHTTSHHHHHHH----------HHCTTTTTTT----------THHHHHHHHHHHHHHHHTTTTTTSSSS-
T ss_pred             -----HHHHHHHHhCCCCcchH----------HHHHHHcCcH----------hhhHHHHHhhccchHHHHHHHHhcccc-
Confidence                 99999999999876533          1122211111          111111110000  0000000000000 


Q ss_pred             cccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCc-----ccccccCCChHHHHHHHhCcHHHHHHHH
Q 048145          248 DQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQT-----LDNVNEKGQNILHVAIMYRQLEIFEIIK  317 (578)
Q Consensus       248 ~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~-----i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll  317 (578)
                      ..+..+..+.+....+.++|+.|+..|+.+++++|++ .+..     .+..+.+|+||||+|+++|+.++|++|+
T Consensus       264 ~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~-~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL  337 (346)
T d2ajaa1         264 VFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLS-IPGIKALAPTATIPGDANELLRLALRLGNQGACALLL  337 (346)
T ss_dssp             CCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHT-STTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHT
T ss_pred             cHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHh-CcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHh
Confidence            0011111112222335569999999999999999998 4442     3344568999999999999999999999

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=5.1e-26  Score=210.99  Aligned_cols=200  Identities=19%  Similarity=0.195  Sum_probs=171.2

Q ss_pred             HHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHH
Q 048145           10 FLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLV   89 (578)
Q Consensus        10 ~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll   89 (578)
                      ++++|.+ ++.++....|.+|+||||+||+.|+.++|++|++. +.+     ++.+|..+.++++.++..++.+......
T Consensus         4 ~v~~Ll~-~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~-g~~-----~n~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (209)
T d1ot8a_           4 VISDLLA-QGAELNATMDKTGETSLHLAARFARADAAKRLLDA-GAD-----ANSQDNTGRTPLHAAVAADAMGVFQILL   76 (209)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHT-TCC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHH-CCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhh-ccc-----cccccccccccccccccccccccccccc
Confidence            4444444 35555455789999999999999999999999998 888     9999999999999999999999888887


Q ss_pred             hhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHH
Q 048145           90 EFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKI  164 (578)
Q Consensus        90 ~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~  164 (578)
                      ....       .........|.++.+.+.........+.|.+.     ..+..|.|||+.++        ..|.      
T Consensus        77 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~--------~~~~------  135 (209)
T d1ot8a_          77 RNRA-------TNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAA--------AVNN------  135 (209)
T ss_dssp             TCTT-------CCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHH--------HTTC------
T ss_pred             cccc-------cccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhc--------ccCc------
Confidence            7666       34555667789999999999999999999887     57789999999999        6676      


Q ss_pred             HHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCc
Q 048145          165 WEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYP  244 (578)
Q Consensus       165 ~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~  244 (578)
                                .++++.+++++.+++..                                                     
T Consensus       136 ----------~~~~~~l~~~~~~~~~~-----------------------------------------------------  152 (209)
T d1ot8a_         136 ----------TEAVNILLMHHANRDAQ-----------------------------------------------------  152 (209)
T ss_dssp             ----------HHHHHHHHHTTCCTTCC-----------------------------------------------------
T ss_pred             ----------ceeeeeecccccccccc-----------------------------------------------------
Confidence                      78999999887664332                                                     


Q ss_pred             ccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHH
Q 048145          245 QAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEII  316 (578)
Q Consensus       245 ~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~L  316 (578)
                              |..|.|       |||+|+..|+.++++.||+ .|++++..|.+|+||||+|+++|+.++|++|
T Consensus       153 --------d~~g~T-------pL~~A~~~g~~~~v~~Ll~-~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         153 --------DDKDET-------PLFLAAREGSYEASKALLD-NFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             --------CTTCCC-------HHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             --------cccccc-------ccchhccccHHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence                    335566       9999999999999999998 8899999999999999999999999999986

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.94  E-value=2.1e-26  Score=223.40  Aligned_cols=212  Identities=13%  Similarity=0.149  Sum_probs=170.9

Q ss_pred             CcccCChHHHHHHHhcCCc------hhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHH
Q 048145            1 MALKGDRQGFLRYFAQQTD------EELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVH   74 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~------~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh   74 (578)
                      ||..|+.+.+..++.. ..      +..++.+|.+|+||||+|+..|+.++|++|+++ |++     ++.+|.+|.||||
T Consensus        40 A~~~g~~~~v~~Ll~~-~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~-Gad-----~n~~~~~g~t~l~  112 (277)
T d2fo1e1          40 IASNSSAEKSEDLIVH-EAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKA-GAD-----PTIYNKSERSALH  112 (277)
T ss_dssp             HHCTTCCSCCTTHHHH-HHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCC-----SCCCCTTCCCHHH
T ss_pred             HHHcCCHHHHHHHHhc-chhHHHHcCCCccccCCCCCeeecccccccccccccccccc-ccc-----ccccccccccccc
Confidence            5677888766665544 11      234577899999999999999999999999999 999     9999999999999


Q ss_pred             HHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHH---HHHHHHHh-------------ccccCC
Q 048145           75 ALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIE---ALRYFAEQ-------------VNQTAA  138 (578)
Q Consensus        75 ~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~---iv~~Ll~~-------------~~~~~g  138 (578)
                      +|+..|+.++++.+...+...     ..++..+..+.++.+.+...+..+   .++.+.+.             ..+..|
T Consensus       113 ~a~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  187 (277)
T d2fo1e1         113 QAAANRDFGMMVYMLNSTKLK-----GDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKG  187 (277)
T ss_dssp             HHHHTTCHHHHHHHTTSHHHH-----HTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCC
T ss_pred             chhhhcchhhhhhhhhccccc-----ccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCC
Confidence            999999999999998765310     156677888999999999987655   33344443             345789


Q ss_pred             ccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHh-ccccccccccCCCCCCchhhcccCCCCccccccc
Q 048145          139 ISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVE-KRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVD  217 (578)
Q Consensus       139 ~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~-~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  217 (578)
                      .||||+++        ..|+                .+++++++. .+.+..                            
T Consensus       188 ~t~L~~~~--------~~~~----------------~~~~~~~l~~~~~~~~----------------------------  215 (277)
T d2fo1e1         188 RTALHYAA--------QVSN----------------MPIVKYLVGEKGSNKD----------------------------  215 (277)
T ss_dssp             CCTHHHHH--------SSCC----------------HHHHHHHHHHSCCCTT----------------------------
T ss_pred             CCcccccc--------cccc----------------cccccccccccccccc----------------------------
Confidence            99999999        7777                777776554 333221                            


Q ss_pred             cchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCC
Q 048145          218 VSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKG  297 (578)
Q Consensus       218 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G  297 (578)
                                                       ..|..|.|       |||+|++.|+.+++++|++ .|++++.+|.+|
T Consensus       216 ---------------------------------~~d~~g~t-------pL~~A~~~g~~~iv~~Ll~-~gadin~~d~~G  254 (277)
T d2fo1e1         216 ---------------------------------KQDEDGKT-------PIMLAAQEGRIEVVMYLIQ-QGASVEAVDATD  254 (277)
T ss_dssp             ---------------------------------CCCTTCCC-------HHHHHHHHTCHHHHHHHHH-TTCCSSCCCSSS
T ss_pred             ---------------------------------ccCCCCCC-------HHHHHHHcCCHHHHHHHHH-CcCCCCCcCCCC
Confidence                                             12335555       9999999999999999998 899999999999


Q ss_pred             ChHHHHHHHhCcHHHHHHHH
Q 048145          298 QNILHVAIMYRQLEIFEIIK  317 (578)
Q Consensus       298 ~t~Lh~A~~~g~~~iv~~Ll  317 (578)
                      +||||+|+++|+.+++++|+
T Consensus       255 ~T~L~~A~~~~~~~iv~lL~  274 (277)
T d2fo1e1         255 HTARQLAQANNHHNIVDIFD  274 (277)
T ss_dssp             CCHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999998

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.2e-25  Score=198.41  Aligned_cols=151  Identities=20%  Similarity=0.283  Sum_probs=130.5

Q ss_pred             cHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCC
Q 048145           32 CAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGE  111 (578)
Q Consensus        32 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~  111 (578)
                      +|||+||..|+.++|+.|+++ |++     ++.+|.+|.||||+|+ .|+.|++++|+++|+        +++.++..|.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~-g~d-----~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a--------~~~~~~~~~~   67 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQN-NVN-----VNAQNGFGRTALQVMK-LGNPEIARRLLLRGA--------NPDLKDRTGF   67 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTS-CCC-----TTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTC--------CTTCCCTTSC
T ss_pred             HHHHHHHHcCCHHHHHHHHHC-CCC-----cCccCCcccccccccc-ccccccccccccccc--------ccccccccCc
Confidence            799999999999999999998 999     9999999999999886 789999999999999        8899999999


Q ss_pred             CHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhcccccccc
Q 048145          112 TPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCAT  191 (578)
Q Consensus       112 TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~  191 (578)
                      +||+.++..++.+.++.|++                                                    ++.+++..
T Consensus        68 ~~l~~~~~~~~~~~~~~l~~----------------------------------------------------~~~~~~~~   95 (156)
T d1ihba_          68 AVIHDAARAGFLDTLQTLLE----------------------------------------------------FQADVNIE   95 (156)
T ss_dssp             CHHHHHHHHTCHHHHHHHHH----------------------------------------------------TTCCTTCC
T ss_pred             cccccccccccccccccccc----------------------------------------------------cccccccc
Confidence            99999999888766666654                                                    22222111


Q ss_pred             ccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHH
Q 048145          192 HEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAV  271 (578)
Q Consensus       192 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa  271 (578)
                                                                                   |..+.+       |||+|+
T Consensus        96 -------------------------------------------------------------~~~~~~-------~l~~a~  107 (156)
T d1ihba_          96 -------------------------------------------------------------DNEGNL-------PLHLAA  107 (156)
T ss_dssp             -------------------------------------------------------------CTTSCC-------HHHHHH
T ss_pred             -------------------------------------------------------------cccccc-------cccccc
Confidence                                                                         224445       999999


Q ss_pred             hcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHH
Q 048145          272 SNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIK  317 (578)
Q Consensus       272 ~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll  317 (578)
                      ..|+.++++.|+++.+.+++.+|.+|+||||+|+++|+.+++++|+
T Consensus       108 ~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll  153 (156)
T d1ihba_         108 KEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ  153 (156)
T ss_dssp             HTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             ccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            9999999999999888899999999999999999999999999998

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.5e-24  Score=202.24  Aligned_cols=211  Identities=17%  Similarity=0.184  Sum_probs=176.1

Q ss_pred             CcccCChHHHHHHHhcC-CchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHc
Q 048145            1 MALKGDRQGFLRYFAQQ-TDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATI   79 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~-~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~   79 (578)
                      ||..|+.+.++.++... ..+..++..|..|+||||+|+..|+.++|+.|+++ +++     .+..+..|.++++.|...
T Consensus        10 A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~-ga~-----~~~~~~~~~~~~~~a~~~   83 (228)
T d1k1aa_          10 AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA-GAS-----PMALDRHGQTAAHLACEH   83 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCC-----TTCCCTTSCCHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccc-ccc-----cccccccccccccccccc
Confidence            67899999887776530 02334678899999999999999999999999998 888     899999999999999999


Q ss_pred             CCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh------ccccCCccHHHHHHHHHHHHH
Q 048145           80 NNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ------VNQTAAISILSSKMYIAIWRQ  153 (578)
Q Consensus        80 g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~------~~~~~g~t~Lh~A~~~~~~~~  153 (578)
                      ++.++++.+........    ...+.......+|||.+.........+.|...      .....|.++|+.|+       
T Consensus        84 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~-------  152 (228)
T d1k1aa_          84 RSPTCLRALLDSAAPGT----LDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAV-------  152 (228)
T ss_dssp             TCHHHHHHHHHHSCTTS----CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHH-------
T ss_pred             ccccchhhhhhcccccc----ccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHH-------
Confidence            99999999888765111    23445566788999999999999999888876      45578999999999       


Q ss_pred             hccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcC
Q 048145          154 VIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKG  233 (578)
Q Consensus       154 ~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  233 (578)
                       ..+.                .++++.++++|.+....                                          
T Consensus       153 -~~~~----------------~~~~~~~~~~~~~~~~~------------------------------------------  173 (228)
T d1k1aa_         153 -ENNS----------------LSMVQLLLQHGANVNAQ------------------------------------------  173 (228)
T ss_dssp             -HTTC----------------HHHHHHHHHTTCCTTCB------------------------------------------
T ss_pred             -Hhhh----------------hhhhhhhhhhccccccc------------------------------------------
Confidence             6666                78888888877654322                                          


Q ss_pred             CccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHH
Q 048145          234 CTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIF  313 (578)
Q Consensus       234 ~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv  313 (578)
                                         |..|.|       |||+|+..|+.+++++|++ .|++++.+|.+|+||||+|+++|+.++|
T Consensus       174 -------------------d~~g~t-------~L~~A~~~g~~~~v~~Ll~-~Gad~n~~d~~G~TpL~~A~~~~~~div  226 (228)
T d1k1aa_         174 -------------------MYSGSS-------ALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPLMVARSRRVIDIL  226 (228)
T ss_dssp             -------------------CTTSCB-------HHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCTTTTCSSHHHHHHH
T ss_pred             -------------------cccCcc-------hHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHhCCCcccc
Confidence                               235556       9999999999999999998 8999999999999999999999999988


Q ss_pred             H
Q 048145          314 E  314 (578)
Q Consensus       314 ~  314 (578)
                      |
T Consensus       227 k  227 (228)
T d1k1aa_         227 R  227 (228)
T ss_dssp             T
T ss_pred             C
Confidence            5

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.4e-24  Score=191.37  Aligned_cols=150  Identities=20%  Similarity=0.276  Sum_probs=124.7

Q ss_pred             cHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCC
Q 048145           32 CAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGE  111 (578)
Q Consensus        32 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~  111 (578)
                      +.||.||..|+.++|+.|++..+.+     ++.+|..|+||||+|+ .|+.+++++|++++.        +++..+..|.
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~-----~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~--------~~~~~~~~~~   69 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVH-----PDALNRFGKTALQVMM-FGSTAIALELLKQGA--------SPNVQDTSGT   69 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCC-----TTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTC--------CTTCCCTTSC
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCC-----CCccCCCCCccccccc-ccccccccccccccc--------cccccccccc
Confidence            4599999999999999999876778     8999999999999886 488899999999988        7888888899


Q ss_pred             CHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhcccccccc
Q 048145          112 TPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCAT  191 (578)
Q Consensus       112 TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~  191 (578)
                      +|++.++..++.++++.+                                                    +++|++++..
T Consensus        70 ~~l~~~~~~~~~~~~~~~----------------------------------------------------l~~~~~~n~~   97 (156)
T d1bd8a_          70 SPVHDAARTGFLDTLKVL----------------------------------------------------VEHGADVNVP   97 (156)
T ss_dssp             CHHHHHHHTTCHHHHHHH----------------------------------------------------HHTTCCSCCC
T ss_pred             cccccccccccccccccc----------------------------------------------------cccccccccc
Confidence            999999888776555444                                                    4444443322


Q ss_pred             ccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHH
Q 048145          192 HEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAV  271 (578)
Q Consensus       192 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa  271 (578)
                                                                                   |..|.|       |||+|+
T Consensus        98 -------------------------------------------------------------~~~~~t-------~L~~A~  109 (156)
T d1bd8a_          98 -------------------------------------------------------------DGTGAL-------PIHLAV  109 (156)
T ss_dssp             -------------------------------------------------------------CTTSCC-------HHHHHH
T ss_pred             -------------------------------------------------------------cCCCCe-------eecccc
Confidence                                                                         234555       999999


Q ss_pred             hcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHH
Q 048145          272 SNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIK  317 (578)
Q Consensus       272 ~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll  317 (578)
                      +.|+.+++++|+  .+++++.+|.+|+||||+|+++|+.+++++|+
T Consensus       110 ~~~~~~i~~~L~--~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll  153 (156)
T d1bd8a_         110 QEGHTAVVSFLA--AESDLHRRDARGLTPLELALQRGAQDLVDILQ  153 (156)
T ss_dssp             HHTCHHHHHHHH--TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHH
T ss_pred             cccccccccccc--ccccccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            999999999887  46789999999999999999999999999998

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=1.8e-24  Score=189.90  Aligned_cols=146  Identities=18%  Similarity=0.237  Sum_probs=125.2

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHH
Q 048145           69 GNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILS  143 (578)
Q Consensus        69 G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh  143 (578)
                      +.||||.||+.|+.++|+.||++|+        +++ .|..|.||||+|+..++.++++.++..     ..+..+.++++
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~ga--------~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMANGA--------PFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLH   72 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTC--------CCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHH
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHcCC--------Ccc-cccCCCccccccccccccccccccccccccccccccccccccc
Confidence            3599999999999999999999999        555 689999999999999999999999887     45567788888


Q ss_pred             HHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhH
Q 048145          144 SKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEW  223 (578)
Q Consensus       144 ~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  223 (578)
                      .++        ...+                .++++++.+++.+....                                
T Consensus        73 ~~~--------~~~~----------------~~~~~~l~~~~~~~~~~--------------------------------   96 (153)
T d1awcb_          73 MAA--------SEGH----------------ANIVEVLLKHGADVNAK--------------------------------   96 (153)
T ss_dssp             HHH--------HHTC----------------HHHHHHHHTTTCCTTCC--------------------------------
T ss_pred             ccc--------cccc----------------ceeeecccccCCccccc--------------------------------
Confidence            888        4444                78888888877654322                                


Q ss_pred             HHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHH
Q 048145          224 VELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHV  303 (578)
Q Consensus       224 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~  303 (578)
                                                   |.+|.|       |||+|+..|+.+++++|++ .|++++.+|.+|+||||+
T Consensus        97 -----------------------------~~~g~T-------~L~~A~~~g~~~iv~~ll~-~gad~~~~d~~g~Tpl~~  139 (153)
T d1awcb_          97 -----------------------------DMLKMT-------ALHWATEHNHQEVVELLIK-YGADVHTQSKFCKTAFDI  139 (153)
T ss_dssp             -----------------------------CTTSCC-------HHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHH
T ss_pred             -----------------------------cccCch-------HHHhhhhcchhheeeeccc-cccCCcccCCCCCCHHHH
Confidence                                         235555       9999999999999999998 899999999999999999


Q ss_pred             HHHhCcHHHHHHH
Q 048145          304 AIMYRQLEIFEII  316 (578)
Q Consensus       304 A~~~g~~~iv~~L  316 (578)
                      |+.+|+.+++++|
T Consensus       140 A~~~g~~eiv~lL  152 (153)
T d1awcb_         140 SIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHTTCHHHHHHH
T ss_pred             HHHcCCHHHHHhC
Confidence            9999999999876

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.91  E-value=2e-26  Score=230.80  Aligned_cols=261  Identities=10%  Similarity=0.034  Sum_probs=151.6

Q ss_pred             CcHHHHHHhcCChHHHHHHHccCCCc------hhhhhhhccCCCCChHHHHHHHcCCHHHHHH---HHhhcCCCCCCCCC
Q 048145           31 ECAIHVAAAMEDPELIKKFLGRLPVE------KRLEALMQTDDNGNTAVHALATINNVDVAKT---LVEFSKQSNDADKN  101 (578)
Q Consensus        31 ~T~Lh~Aa~~g~~~~v~~Ll~~~~~~------~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~---Ll~~g~~~~~~~~~  101 (578)
                      .+.++.+...+..++.+.+... +.+      .....++.+|.+|.||||+||++||.+++++   |++.|+        
T Consensus        47 ~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~--------  117 (346)
T d2ajaa1          47 AIHIFLPGTKNMEQVRQLLCLY-YAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDE--------  117 (346)
T ss_dssp             HHHHCCCCSSHHHHHHHHHHHH-HHHTTTTCTTHHHHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCS--------
T ss_pred             HHHHHHHhhccHHHHHHHHHHc-chhhccchhhhhhHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCC--------
Confidence            3444445555556666666543 111      1123367788999999999999999877665   788888        


Q ss_pred             CcccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----c--cccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHH
Q 048145          102 PLVVENKLGETPLYRAASVGKIEALRYFAEQ-----V--NQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKA  174 (578)
Q Consensus       102 ~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~--~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~  174 (578)
                      +++.+|.+|.||||+||++||.++|++|++.     .  .+.+|.||||+|+        ..|+                
T Consensus       118 ~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa--------~~g~----------------  173 (346)
T d2ajaa1         118 IVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAA--------ENGH----------------  173 (346)
T ss_dssp             SCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHH--------HTTC----------------
T ss_pred             cccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHH--------HHhh----------------
Confidence            8999999999999999999999999999997     2  2346999999999        8899                


Q ss_pred             HHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHHHHhcCCccccccccCccccccccccc
Q 048145          175 VALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTT  254 (578)
Q Consensus       175 ~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~  254 (578)
                      .+++++|+++|++..........+.++++.|+..          ++.++++.|+..+               .+.+..+.
T Consensus       174 ~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~----------g~~~iv~~Ll~~g---------------a~~~~~~~  228 (346)
T d2ajaa1         174 LHVLNRLCELAPTEATAMIQAENYYAFRWAAVGR----------GHHNVINFLLDCP---------------VMLAYAEI  228 (346)
T ss_dssp             HHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTT----------CCHHHHHHHTTSH---------------HHHHHHHH
T ss_pred             HHHHHHHHHcCCcccccccccCCCcchhhHHhhc----------CHHHHHHHHHhCC---------------CCcchHHH
Confidence            9999999998876432211000112233323211          1222222221100               00000001


Q ss_pred             ccccccccchhHHHHHHhcCHHHHHHHHHHHCCC-ccccccc-------CCChHHHHHHHhCcHHHHHHHHHhhchhhhh
Q 048145          255 KDMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQ-TLDNVNE-------KGQNILHVAIMYRQLEIFEIIKEKMQLSLAE  326 (578)
Q Consensus       255 ~g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~-~i~~~d~-------~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~  326 (578)
                      ...+....+.++++.+...+..+....+....+. ..+..+.       .+.++++.|+..++.+++++|++........
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~  308 (346)
T d2ajaa1         229 HEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALA  308 (346)
T ss_dssp             CTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGS
T ss_pred             HHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhc
Confidence            1111111222233333333333322222210000 0111111       2346788888899999999999322222233


Q ss_pred             hhhcccCCCCchhhHHHhccccc
Q 048145          327 WALKIDNEGYTILHQVADMKYYK  349 (578)
Q Consensus       327 ~~~~~d~~G~T~LhlA~~~~~~~  349 (578)
                      ..+..+.+|+||||+|++.|+.+
T Consensus       309 ~~~~~~~~g~T~LhlA~~~Gn~e  331 (346)
T d2ajaa1         309 PTATIPGDANELLRLALRLGNQG  331 (346)
T ss_dssp             SCCSSTTCCCHHHHHHHHHTCTT
T ss_pred             ccccCCCCCCcHHHHHHHcCcHH
Confidence            34566778999999999999873

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=2.1e-25  Score=219.28  Aligned_cols=187  Identities=19%  Similarity=0.215  Sum_probs=124.2

Q ss_pred             hhcc-CCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcH-------HHHHHHHHh-
Q 048145           62 LMQT-DDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKI-------EALRYFAEQ-  132 (578)
Q Consensus        62 l~~~-d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~-------~iv~~Ll~~-  132 (578)
                      ++.+ |.+|+||||+||..|+.++|++|+++|+        +++.+|..|+||||.|+..++.       ++++++.+. 
T Consensus        99 vn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~ga--------d~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~  170 (301)
T d1sw6a_          99 LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGS--------NRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCL  170 (301)
T ss_dssp             SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTC--------CTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGG
T ss_pred             cCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCC--------CCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhh
Confidence            6655 8999999999999999999999999999        8999999999999999987762       445555443 


Q ss_pred             -ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCc
Q 048145          133 -VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNI  211 (578)
Q Consensus       133 -~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~  211 (578)
                       ..|..|+||||+++....    ..+.  ....+..      .-.+++++++.+........                  
T Consensus       171 ~~~d~~g~t~lh~~~~~~~----~~~~--~~~~~~~------~~~~~~~l~~~~~~~~~~~~------------------  220 (301)
T d1sw6a_         171 ILEDSMNRTILHHIIITSG----MTGC--SAAAKYY------LDILMGWIVKKQNRPIQSGT------------------  220 (301)
T ss_dssp             GEECTTCCCHHHHHHHHHT----STTC--HHHHHHH------HHHHHHHHHHGGGCCEEEC-------------------
T ss_pred             hhcccccCCHHHHHHHHhC----cccc--HHHHHHH------HHHHHHHHHhcCCcchhccc------------------
Confidence             577899999999984321    1111  0000000      01233444444332221100                  


Q ss_pred             cccccccchhhHHHHHHHHhcCCccccccccCcccccccccccccccccccchhHHHHHHhcCHHHHH-----HHHHHHC
Q 048145          212 EKKVVDVSAGEWVELMIQVKKGCTNKAHVDQYPQAVDQENDTTKDMTSSMRTMRILLFAVSNGIIEIL-----EEIRHKY  286 (578)
Q Consensus       212 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~t~~~~g~~pLh~Aa~~G~~~iv-----~~Ll~~~  286 (578)
                                                                ..+.+       +++.+........+     ..++.  
T Consensus       221 ------------------------------------------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~--  249 (301)
T d1sw6a_         221 ------------------------------------------NEKES-------KPNDKNGERKDSILENLDLKWIIA--  249 (301)
T ss_dssp             ----------------------------------------------------------------CHHHHHCSHHHHHH--
T ss_pred             ------------------------------------------ccccc-------hhHHHHhcchHHHHHHHhhHHHHh--
Confidence                                                      01111       33333322222222     22222  


Q ss_pred             CCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHH
Q 048145          287 PQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVA  343 (578)
Q Consensus       287 ~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~  343 (578)
                       ..+|.+|.+|+||||+|+++|+.++|++|+     +.|++++.+|++|+||||+|+
T Consensus       250 -~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll-----~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         250 -NMLNAQDSNGDTCLNIAARLGNISIVDALL-----DYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             -HTTTCCCTTSCCHHHHHHHHCCHHHHHHHH-----HTTCCTTCCCTTSCCGGGGTC
T ss_pred             -cCccCCCCCCCCHHHHHHHcCCHHHHHHHH-----HCCCCCCCCCCCCCCHHHHcC
Confidence             237889999999999999999999999999     678889999999999999996

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=8.4e-24  Score=186.37  Aligned_cols=143  Identities=21%  Similarity=0.277  Sum_probs=131.7

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN   80 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g   80 (578)
                      ||.+|+++.++.++.+  .+...+..|..|+||||+|+ .|+.+++++|+++ +.+     ++.++..|.+||+.|+..+
T Consensus         9 Aa~~g~~~~vk~lL~~--~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~-~~~-----~~~~~~~~~~~l~~~~~~~   79 (156)
T d1bd8a_           9 AAARGDVQEVRRLLHR--ELVHPDALNRFGKTALQVMM-FGSTAIALELLKQ-GAS-----PNVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHTCHHHHHHHHHT--TCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHT-TCC-----TTCCCTTSCCHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHh--CCCCCCccCCCCCccccccc-ccccccccccccc-ccc-----ccccccccccccccccccc
Confidence            6889999999999987  34556888999999999886 5899999999998 888     9999999999999999999


Q ss_pred             CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh----ccccCCccHHHHHHHHHHHHHhcc
Q 048145           81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ----VNQTAAISILSSKMYIAIWRQVIQ  156 (578)
Q Consensus        81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~----~~~~~g~t~Lh~A~~~~~~~~~~~  156 (578)
                      +.++++.++++|+        +++.+|..|.||||+|++.|+.+++++|++.    .+|.+|.||||+|+        ..
T Consensus        80 ~~~~~~~~l~~~~--------~~n~~~~~~~t~L~~A~~~~~~~i~~~L~~~~~~~~~d~~G~TpL~~A~--------~~  143 (156)
T d1bd8a_          80 FLDTLKVLVEHGA--------DVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELAL--------QR  143 (156)
T ss_dssp             CHHHHHHHHHTTC--------CSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTSCTTCCCTTSCCHHHHHH--------HS
T ss_pred             ccccccccccccc--------ccccccCCCCeeeccccccccccccccccccccccccCCCCCCHHHHHH--------Hc
Confidence            9999999999999        8999999999999999999999999999866    67899999999999        88


Q ss_pred             CchHHHHHHHhhhhhHHHHHHHHHHHhc
Q 048145          157 GCPAIKKIWEKKQIHKKAVALVKMLVEK  184 (578)
Q Consensus       157 G~~~~~~~~~~~~~~~~~~~~v~~Ll~~  184 (578)
                      |+                .+++++|+++
T Consensus       144 g~----------------~~iv~~Ll~h  155 (156)
T d1bd8a_         144 GA----------------QDLVDILQGH  155 (156)
T ss_dssp             CC----------------HHHHHHHHTT
T ss_pred             CC----------------HHHHHHHHhh
Confidence            88                8999999975

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=3.7e-23  Score=181.44  Aligned_cols=123  Identities=16%  Similarity=0.177  Sum_probs=111.7

Q ss_pred             CCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCC
Q 048145           30 GECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKL  109 (578)
Q Consensus        30 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~  109 (578)
                      ..||||.||+.|+.++|++|+++ +++     ++ .|..|+||||+|+..++.++++.++....        .....+..
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~-ga~-----~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~--------~~~~~~~~   66 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMAN-GAP-----FT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGV--------SRDARTKV   66 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHH-TCC-----CC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTC--------CTTCCCTT
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHc-CCC-----cc-cccCCCccccccccccccccccccccccc--------cccccccc
Confidence            35999999999999999999999 877     66 69999999999999999999999999888        56677888


Q ss_pred             CCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhc
Q 048145          110 GETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEK  184 (578)
Q Consensus       110 g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~  184 (578)
                      +.++++.++...+.+++++++..     ..+.+|.||||+|+        ..|+                .+++++|+++
T Consensus        67 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~--------~~g~----------------~~iv~~ll~~  122 (153)
T d1awcb_          67 DRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWAT--------EHNH----------------QEVVELLIKY  122 (153)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHH--------HTTC----------------HHHHHHHHHT
T ss_pred             cccccccccccccceeeecccccCCccccccccCchHHHhhh--------hcch----------------hheeeecccc
Confidence            99999999999999999999987     67899999999999        7888                8999999999


Q ss_pred             ccccccc
Q 048145          185 RIDDCAT  191 (578)
Q Consensus       185 g~~~~~~  191 (578)
                      |++++..
T Consensus       123 gad~~~~  129 (153)
T d1awcb_         123 GADVHTQ  129 (153)
T ss_dssp             TCCTTCC
T ss_pred             ccCCccc
Confidence            9887543

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=9.5e-24  Score=207.27  Aligned_cols=85  Identities=15%  Similarity=0.215  Sum_probs=69.2

Q ss_pred             cCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCH---HHHHHHHhhcCCCCCCCCC
Q 048145           25 YRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNV---DVAKTLVEFSKQSNDADKN  101 (578)
Q Consensus        25 ~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~---~iv~~Ll~~g~~~~~~~~~  101 (578)
                      ..|.+|+||||+||..|+.++|+.|+++ |++     ++.+|..|+||||.||..++.   +.++.|++...       .
T Consensus       102 ~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~-gad-----~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~-------~  168 (301)
T d1sw6a_         102 PVDEHGNTPLHWLTSIANLELVKHLVKH-GSN-----RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY-------P  168 (301)
T ss_dssp             CCSTTCCCHHHHHHHTTCHHHHHHHHHT-TCC-----TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG-------G
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHC-CCC-----CCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh-------h
Confidence            4588999999999999999999999999 999     999999999999999987752   22233343333       2


Q ss_pred             CcccCCCCCCCHHHHHHHcCc
Q 048145          102 PLVVENKLGETPLYRAASVGK  122 (578)
Q Consensus       102 ~~~~~n~~g~TpLh~A~~~g~  122 (578)
                      .+..+|..|+||||+++..+.
T Consensus       169 ~~~~~d~~g~t~lh~~~~~~~  189 (301)
T d1sw6a_         169 CLILEDSMNRTILHHIIITSG  189 (301)
T ss_dssp             GGGEECTTCCCHHHHHHHHHT
T ss_pred             hhhhcccccCCHHHHHHHHhC
Confidence            566788999999999887544

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=4.4e-22  Score=175.06  Aligned_cols=143  Identities=20%  Similarity=0.307  Sum_probs=131.2

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN   80 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g   80 (578)
                      ||..|+.+.++.+++.   +..++.+|.+|.||||+|+ .|+.+++++|+++ +++     ++.++..|.+||+.++..|
T Consensus         8 Aa~~g~~~~v~~Ll~~---g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~-~a~-----~~~~~~~~~~~l~~~~~~~   77 (156)
T d1ihba_           8 AAARGDLEQLTSLLQN---NVNVNAQNGFGRTALQVMK-LGNPEIARRLLLR-GAN-----PDLKDRTGFAVIHDAARAG   77 (156)
T ss_dssp             HHHHTCHHHHHHHTTS---CCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHT-TCC-----TTCCCTTSCCHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHC---CCCcCccCCcccccccccc-ccccccccccccc-ccc-----cccccccCccccccccccc
Confidence            6889999988887777   3445788999999999875 7999999999999 999     9999999999999999999


Q ss_pred             CHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh------ccccCCccHHHHHHHHHHHHHh
Q 048145           81 NVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ------VNQTAAISILSSKMYIAIWRQV  154 (578)
Q Consensus        81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~------~~~~~g~t~Lh~A~~~~~~~~~  154 (578)
                      +.++++.|++.+.        +++..+..|.+|||+|+..|+.+++++|+++      .+|.+|.||||+|+        
T Consensus        78 ~~~~~~~l~~~~~--------~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~--------  141 (156)
T d1ihba_          78 FLDTLQTLLEFQA--------DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR--------  141 (156)
T ss_dssp             CHHHHHHHHHTTC--------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHH--------
T ss_pred             ccccccccccccc--------cccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHH--------
Confidence            9999999999998        8899999999999999999999999999998      56788999999999        


Q ss_pred             ccCchHHHHHHHhhhhhHHHHHHHHHHHhcc
Q 048145          155 IQGCPAIKKIWEKKQIHKKAVALVKMLVEKR  185 (578)
Q Consensus       155 ~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g  185 (578)
                      ..|+                .+++++|+++|
T Consensus       142 ~~~~----------------~~iv~~Ll~~G  156 (156)
T d1ihba_         142 LYGR----------------NEVVSLMQANG  156 (156)
T ss_dssp             HTTC----------------HHHHHHHHHTC
T ss_pred             HcCC----------------HHHHHHHHhcC
Confidence            7788                89999999986

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.86  E-value=2e-23  Score=174.23  Aligned_cols=102  Identities=16%  Similarity=0.244  Sum_probs=97.5

Q ss_pred             CcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCC
Q 048145           31 ECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLG  110 (578)
Q Consensus        31 ~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g  110 (578)
                      +|||++|++.|+.++|+.|+++ |++     ++.+|.+|+||||+|+..|+.+++++|+++|+        +++.+|..|
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~-g~d-----~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~--------din~~d~~g   68 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAK-GED-----VNRTLEGGRKPLHYAADCGQLEILEFLLLKGA--------DINAPDKHH   68 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTT-TCC-----CCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSC--------TTTCCSSSC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHh-hhc-----cccccccccccccccccccccccccccccccc--------eeeeccccc
Confidence            5899999999999999999998 999     99999999999999999999999999999999        899999999


Q ss_pred             CCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHH
Q 048145          111 ETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKM  146 (578)
Q Consensus       111 ~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~  146 (578)
                      +||||+|+.+|+.+++++|+++     ..|.+|.||||+|.
T Consensus        69 ~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          69 ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             SCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             ccchhhhhhcCchhhhhhhhcccccceeeCCCCCCHHHHHh
Confidence            9999999999999999999998     67899999999885

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.3e-22  Score=167.95  Aligned_cols=116  Identities=15%  Similarity=0.118  Sum_probs=105.9

Q ss_pred             CCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCC
Q 048145           29 NGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENK  108 (578)
Q Consensus        29 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~  108 (578)
                      .+.++||+||+.|+.++|++|+++ |++     ++.+|.+|.||||+|+ .|+.+++++|+++|+        +++.++.
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~-gad-----~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga--------~~~~~~~   66 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEA-GAN-----PNAPNSYGRRPIQVMM-MGSARVAELLLLHGA--------EPNCADP   66 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTT-TCC-----TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTC--------CCCCCCT
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHc-CCc-----cccccccccccccccc-ccccccccccccccc--------ccccccc
Confidence            456899999999999999999998 999     9999999999999775 799999999999999        8888888


Q ss_pred             CCC-CHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHH
Q 048145          109 LGE-TPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLV  182 (578)
Q Consensus       109 ~g~-TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll  182 (578)
                      .|. ||||+|+++|+.+++++|++.     ..|..|.||||+|+        ..|+                .+++++|+
T Consensus        67 ~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~--------~~g~----------------~~~v~~Ll  122 (125)
T d1bi7b_          67 ATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAE--------ELGH----------------RDVARYLR  122 (125)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHH--------HHTC----------------HHHHHHHS
T ss_pred             cccccccccccccccccccccccccccccccccCCCCCHHHHHH--------HcCC----------------HHHHHHHH
Confidence            775 699999999999999999998     67899999999999        7787                89999987


Q ss_pred             h
Q 048145          183 E  183 (578)
Q Consensus       183 ~  183 (578)
                      +
T Consensus       123 s  123 (125)
T d1bi7b_         123 A  123 (125)
T ss_dssp             S
T ss_pred             h
Confidence            5

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=6.9e-22  Score=166.69  Aligned_cols=119  Identities=13%  Similarity=0.160  Sum_probs=100.8

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHhccccCCccHHHHHHHH
Q 048145           69 GNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQVNQTAAISILSSKMYI  148 (578)
Q Consensus        69 G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~g~t~Lh~A~~~  148 (578)
                      +.++||+||+.|+.++|++|+++|+        +++.+|..|.||||.|+ .|+.                         
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~ga--------d~n~~~~~g~t~l~~a~-~g~~-------------------------   48 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGA--------NPNAPNSYGRRPIQVMM-MGSA-------------------------   48 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTC--------CTTCCCSSSCCTTTSSC-TTCH-------------------------
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCC--------ccccccccccccccccc-cccc-------------------------
Confidence            5689999999999999999999999        89999999999999765 5664                         


Q ss_pred             HHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhccccccccccCCCCCCchhhcccCCCCccccccccchhhHHHHHH
Q 048145          149 AIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKRIDDCATHEKPTPGVTEISLGLGKGNIEKKVVDVSAGEWVELMI  228 (578)
Q Consensus       149 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~  228 (578)
                                                 +++++|+++|++++..                                     
T Consensus        49 ---------------------------~~v~~Ll~~ga~~~~~-------------------------------------   64 (125)
T d1bi7b_          49 ---------------------------RVAELLLLHGAEPNCA-------------------------------------   64 (125)
T ss_dssp             ---------------------------HHHHHHHTTTCCCCCC-------------------------------------
T ss_pred             ---------------------------cccccccccccccccc-------------------------------------
Confidence                                       4555556666655433                                     


Q ss_pred             HHhcCCccccccccCcccccccccccc-cccccccchhHHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHh
Q 048145          229 QVKKGCTNKAHVDQYPQAVDQENDTTK-DMTSSMRTMRILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMY  307 (578)
Q Consensus       229 ~~~~~~~~~~l~~~~~~~~~~~~~~~~-g~t~~~~g~~pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~  307 (578)
                                              +.. +.|       |||+|++.|+.+++++|++ .|++++.+|.+|+||||+|+++
T Consensus        65 ------------------------~~~~~~~-------~L~~A~~~g~~~~v~~Ll~-~ga~~~~~d~~G~T~l~~A~~~  112 (125)
T d1bi7b_          65 ------------------------DPATLTR-------PVHDAAREGFLDTLVVLHR-AGARLDVRDAWGRLPVDLAEEL  112 (125)
T ss_dssp             ------------------------CTTTCCC-------HHHHHHHHTCHHHHHHHHH-HTCCSSCCCTTCCCHHHHHHHH
T ss_pred             ------------------------ccccccc-------ccccccccccccccccccc-cccccccccCCCCCHHHHHHHc
Confidence                                    112 234       9999999999999999999 6899999999999999999999


Q ss_pred             CcHHHHHHHH
Q 048145          308 RQLEIFEIIK  317 (578)
Q Consensus       308 g~~~iv~~Ll  317 (578)
                      |+.+++++|+
T Consensus       113 g~~~~v~~Ll  122 (125)
T d1bi7b_         113 GHRDVARYLR  122 (125)
T ss_dssp             TCHHHHHHHS
T ss_pred             CCHHHHHHHH
Confidence            9999999997

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.3e-21  Score=166.15  Aligned_cols=118  Identities=17%  Similarity=0.231  Sum_probs=102.9

Q ss_pred             cHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCC
Q 048145           32 CAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGE  111 (578)
Q Consensus        32 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~  111 (578)
                      ++||.||..|+.++|+.|+++ +++     ++.+|.+|+||||+|+..|+.+++++|++.|+        +++.+|.+|+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~-g~d-----~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~--------~~~~~d~~g~   68 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYE-VDD-----PSLPNDEGITALHNAVCAGHTEIVKFLVQFGV--------NVNAADSDGW   68 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTST-TSS-----CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTC--------CTTCCCTTCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHc-CCC-----cccccccccccccccccccccccccccccccc--------ccccccccCc
Confidence            689999999999999999998 899     99999999999999999999999999999998        8899999999


Q ss_pred             CHHHHHHHcCcHHHHHHHHHh------ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHHHHHHhcc
Q 048145          112 TPLYRAASVGKIEALRYFAEQ------VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALVKMLVEKR  185 (578)
Q Consensus       112 TpLh~A~~~g~~~iv~~Ll~~------~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~Ll~~g  185 (578)
                      ||||+|+.+|+.+++++|+++      ..+.+|.||++++..      ..+|+                .+++++|++.+
T Consensus        69 tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a------~~~g~----------------~eiv~~L~~~~  126 (130)
T d1ycsb1          69 TPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEE------MEEGY----------------TQCSQFLYGVQ  126 (130)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCS------SSTTC----------------CCHHHHHHHHH
T ss_pred             ccccccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHH------HHcCh----------------HHHHHHHHhHH
Confidence            999999999999999999997      223568888777641      15677                78899988754

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=3.4e-21  Score=168.02  Aligned_cols=118  Identities=21%  Similarity=0.258  Sum_probs=103.8

Q ss_pred             CcccCChHHHHHHHhcCCc---hhhhccCCCCCCcHHHHHHhc---CChHHHHHHHccCCCchhhhhhhccCCCCChHHH
Q 048145            1 MALKGDRQGFLRYFAQQTD---EELLGYRTFNGECAIHVAAAM---EDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVH   74 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~---~~~~~~~~~~g~T~Lh~Aa~~---g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh   74 (578)
                      |+.++|+..+.+++.+..+   .......+..|+||||+|++.   |+.++|++|+++ |++     ++.+|.+|+||||
T Consensus        13 Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gad-----in~~d~~g~TpLh   86 (154)
T d1dcqa1          13 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGN-----LDKQTGKGSTALH   86 (154)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSC-----TTCCCTTCCCHHH
T ss_pred             HHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHc-CCC-----hhhhhhhhccccc
Confidence            4678999999998877111   112233467899999999975   678999999999 999     9999999999999


Q ss_pred             HHHHcCCHHHHHHHHhhcCCCCCCCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHh
Q 048145           75 ALATINNVDVAKTLVEFSKQSNDADKNPLVVENKLGETPLYRAASVGKIEALRYFAEQ  132 (578)
Q Consensus        75 ~Aa~~g~~~iv~~Ll~~g~~~~~~~~~~~~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~  132 (578)
                      +||+.|+.+++++|+++|+        +++.+|..|+||||+|+++|+.+++++|++.
T Consensus        87 ~A~~~~~~~~v~~Ll~~ga--------d~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~  136 (154)
T d1dcqa1          87 YCCLTDNAECLKLLLRGKA--------SIEIANESGETPLDIAKRLKHEHCEELLTQA  136 (154)
T ss_dssp             HHHHTTCHHHHHHHHHTTC--------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             cccccccccccccccccCc--------cccccCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            9999999999999999999        8999999999999999999999999999986

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=9.8e-21  Score=160.65  Aligned_cols=115  Identities=22%  Similarity=0.229  Sum_probs=101.7

Q ss_pred             CcccCChHHHHHHHhcCCchhhhccCCCCCCcHHHHHHhcCChHHHHHHHccCCCchhhhhhhccCCCCChHHHHHHHcC
Q 048145            1 MALKGDRQGFLRYFAQQTDEELLGYRTFNGECAIHVAAAMEDPELIKKFLGRLPVEKRLEALMQTDDNGNTAVHALATIN   80 (578)
Q Consensus         1 Aa~~G~~~~~~~ll~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~d~~G~TpLh~Aa~~g   80 (578)
                      ||.+|+.+.++.++++   ....+.+|.+|+||||+|+..|+.+++++|++. +++     ++.+|.+|+||||+|+..|
T Consensus         8 A~~~G~~~~v~~Ll~~---g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~-g~~-----~~~~d~~g~tpLh~A~~~g   78 (130)
T d1ycsb1           8 SSLEGEFDLVQRIIYE---VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF-GVN-----VNAADSDGWTPLHCAASCN   78 (130)
T ss_dssp             HHHHTCHHHHHHHTST---TSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHH-TCC-----TTCCCTTCCCHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHc---CCCcccccccccccccccccccccccccccccc-ccc-----cccccccCcccccccchhh
Confidence            6789999987777766   344678899999999999999999999999999 999     9999999999999999999


Q ss_pred             CHHHHHHHHhhcCCCCCCCCCCcccCC-CCCCCHHHHH--HHcCcHHHHHHHHHh
Q 048145           81 NVDVAKTLVEFSKQSNDADKNPLVVEN-KLGETPLYRA--ASVGKIEALRYFAEQ  132 (578)
Q Consensus        81 ~~~iv~~Ll~~g~~~~~~~~~~~~~~n-~~g~TpLh~A--~~~g~~~iv~~Ll~~  132 (578)
                      +.+++++|+++|+        +++..+ ..|+||++++  +.+|+.+++++|++.
T Consensus        79 ~~~~v~~Ll~~ga--------~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          79 NVQVCKFLVESGA--------AVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             CHHHHHHHHHTTC--------CTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHcCC--------CcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            9999999999999        777665 4588887665  678999999999874

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.81  E-value=6.3e-21  Score=158.90  Aligned_cols=72  Identities=18%  Similarity=0.162  Sum_probs=69.0

Q ss_pred             HHHHHHhcCHHHHHHHHHHHCCCcccccccCCChHHHHHHHhCcHHHHHHHHHhhchhhhhhhhcccCCCCchhhHHH
Q 048145          266 ILLFAVSNGIIEILEEIRHKYPQTLDNVNEKGQNILHVAIMYRQLEIFEIIKEKMQLSLAEWALKIDNEGYTILHQVA  343 (578)
Q Consensus       266 pLh~Aa~~G~~~iv~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~d~~G~T~LhlA~  343 (578)
                      |||+|+..|+.+++++|++ .+++++.+|.+|+||||+|+++|+.+++++|+     +.|++++.+|++|+||||+|.
T Consensus        38 ~lh~A~~~~~~~~~~~ll~-~g~din~~d~~g~tpLh~A~~~~~~~~v~~Ll-----~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          38 PLHYAADCGQLEILEFLLL-KGADINAPDKHHITPLLSAVYEGHVSCVKLLL-----SKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             TTHHHHHHSTTTHHHHHHH-SSCTTTCCSSSCSCHHHHHHTTTCCHHHHHHH-----TTCCCSSSSSSSTCCCCCTCS
T ss_pred             ccccccccccccccccccc-ccceeeecccccccchhhhhhcCchhhhhhhh-----cccccceeeCCCCCCHHHHHh
Confidence            9999999999999999998 89999999999999999999999999999999     567789999999999999984

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=3.6e-19  Score=154.97  Aligned_cols=119  Identities=15%  Similarity=0.117  Sum_probs=105.2

Q ss_pred             HHHHHHhcCChHHHHHHHccCCCchhhhhhhcc------CCCCChHHHHHHHc---CCHHHHHHHHhhcCCCCCCCCCCc
Q 048145           33 AIHVAAAMEDPELIKKFLGRLPVEKRLEALMQT------DDNGNTAVHALATI---NNVDVAKTLVEFSKQSNDADKNPL  103 (578)
Q Consensus        33 ~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~------d~~G~TpLh~Aa~~---g~~~iv~~Ll~~g~~~~~~~~~~~  103 (578)
                      .|+.|++.++...+..++.. +.+     ++.+      +..|+||||+|++.   |+.+++++|+++|+        ++
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~-g~d-----~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~ga--------di   74 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYAD-GVD-----LTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG--------NL   74 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHT-TCC-----TTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCS--------CT
T ss_pred             HHHHHHHhCCHHHHHHHHHc-CCC-----cCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCC--------Ch
Confidence            45688999999999999887 665     4433      77899999999974   68999999999999        89


Q ss_pred             ccCCCCCCCHHHHHHHcCcHHHHHHHHHh-----ccccCCccHHHHHHHHHHHHHhccCchHHHHHHHhhhhhHHHHHHH
Q 048145          104 VVENKLGETPLYRAASVGKIEALRYFAEQ-----VNQTAAISILSSKMYIAIWRQVIQGCPAIKKIWEKKQIHKKAVALV  178 (578)
Q Consensus       104 ~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~-----~~~~~g~t~Lh~A~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v  178 (578)
                      +.+|..|+||||+|+..|+.+++++|+++     ..|.+|.||||+|+        ..|+                .+++
T Consensus        75 n~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~--------~~~~----------------~~i~  130 (154)
T d1dcqa1          75 DKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK--------RLKH----------------EHCE  130 (154)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--------HTTC----------------HHHH
T ss_pred             hhhhhhhccccccccccccccccccccccCccccccCCCCCCHHHHHH--------HcCC----------------HHHH
Confidence            99999999999999999999999999998     67899999999999        7788                8999


Q ss_pred             HHHHhcccccc
Q 048145          179 KMLVEKRIDDC  189 (578)
Q Consensus       179 ~~Ll~~g~~~~  189 (578)
                      ++|++.+.+..
T Consensus       131 ~~L~~~~~~~~  141 (154)
T d1dcqa1         131 ELLTQALSGRF  141 (154)
T ss_dssp             HHHHHHHTTCC
T ss_pred             HHHHHhCCCCC
Confidence            99999876543