Citrus Sinensis ID: 048158

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MGRGDDEVVMMNMEVKPAWLQGLMGETFFGGCGVHENCRKNEKNIFCLLCCLSICPHCLPSHRSHPLLQVRRYVYHDVVRLGDLEKLIDCAYIQPYTINHAKVIFLNQRPQSRSCKGSANMCFTCDRILQDSFHFCSLSCKVDYMVYQGQDLSSILYRIDESDFAYSQFDGLRVDGSEIIDDDGQITQSSFLEDPLQYRSTSCSNDNMGSSGISHQPVVVNKKKKGFLPGLVLSLSSRRKGAPQRAPLS
Secondary Structure (PSIPRED)
cccccHHHHHHcccccccHHHHHHHcccccccccccccccccccEEccccccccccccccccccccHHHHHHcccccEEEcccHHHHHcccccccEEEcccEEEEccccccccccccccccccccccccccccEEEEccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHcccccccccHHHHHHHHHHHccccHHccccccccccEEEEccHHHHHHHHcHccccccEEEEEEEEcccEEEHHHHHHHEcccccEEEEEEccEEEEEccccccccccccccccHHHHHHccccccEEEEEEEEEEEEcccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccc
Coil and Loop (DISEMBL)
MGRGDDEVVMMNMEVKPawlqglmgetffggcgvhencrkneknIFCLLCclsicphclpshrshpllqvrRYVYHDVVRLGDleklidcayiqpytinHAKVIflnqrpqsrsckgsanmcftcdrilqdsfhfcslscKVDYMVYQGQDLSSILYridesdfaysqfdglrvdgseiidddgqitqssfledplqyrstscsndnmgssgishqpvvvnkkkkgflpgLVLSLssrrkgapqrapls
Flexible Loop (DISEMBL)
MGRGDDEVVMMNMEVKPAWLQGLMGETFFGGCGVHENCRKNEKNIFCLLCCLSICPHCLPSHRSHPLLQVRRYVYHDVVRLGDLEKLIDCAYIQPYTINHAKVIFLNQRPQSRSCKGSANMCFTCDRILQDSFHFCSLSCKVDYMVYQGQDLSSILYRIDESDFAYSQFDGLRVDGSEIIDDDGQITQSSFLEDPLQYRSTSCSNDNMGSSGISHQPVVVNKKKKGFLPGLvlslssrrkgapqrapls
Low Complexity Region (SEG)
MGRGDDEVVMMNMEVKPAWLQGLMGETFFGGCGVHENCRKNEKNIFCLLCCLSICPHCLPSHRSHPLLQVRRYVYHDVVRLGDLEKLIDCAYIQPYTINHAKVIFLNQRPQSRSCKGSANMCFTCDRILQDSFHFCSLSCKVDYMVYQGQDLSSILYRIDESDFAYSQFDGLRVDGSEIIDDDGQITQSSFLEDPLQYRSTSCSNDNMGSSGISHQPVVVNKKKKGFLPGLVLSLSSRRKGAPQRAPLS
Disordered region (IsUnstruct)
********VMMNMEVKPAWLQGLMGETFFGGCGVHENCRKNEKNIFCLLCCLSICPHCLPSHRSHPLLQVRRYVYHDVVRLGDLEKLIDCAYIQPYTINHAKVIFLNQRPQSRSCKGSANMCFTCDRILQDSFHFCSLSCKVDYMVYQGQDLSSILYRIDESDFAYSQFDGLRVDGSEIIDD********************************************FLPGLV*****************
Disordered Region (DISOPRED)
*******************LQGLMGETFFGGCGVHENCRKNEKNIFCLLCCLSICPHCLPSHRSHPLLQVRRYVYHDVVRLGDLEKLIDCAYIQPYTINHAKVIF****************CFTCDRILQDSFHFCSLSCKVDYMVYQGQD*******************************************************************************************PQRAPL*
Disordered Region (DISEMBL)
MGRGDDEVVMMNMEVKPAWLQGLMGETFFGGCGVHENCRKNEKNIFCLLCCLSICPHCLPSHRSHPLLQVRRYVYHDVVRLGDLEKLIDCAYIQPYTINHAKVIFLNQRPQSRSCKGSANMCFTCDRILQDSFHFCSLSCKVDYMVYQGQDLSSILYRIDESDFAYSQFDGLRVDGSEIIDDDGQITQSSFLEDPLQYRSTSCSNDNMGSSGISHQPVVVNKKKKGFLPGLVLSLS*************
Disordered Region (DISPRO)
*************EVKPAWLQGLMGETFFGGCGVHENCRKNEKNIFCLLCCLSICPHCLPSHRSHPLLQVRRYVYHDVVRLGDLEKLIDCAYIQPYTINHAKVIFLNQRPQSRSCKGSANMCFTCDRILQDSFHFCSLSCKVDYMVYQGQDLSSILYRIDE****************************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRGDDEVVMMNMEVKPAWLQGLMGETFFGGCGVHENCRKNEKNIFCLLCCLSICPHCLPSHRSHPLLQVRRYVYHDVVRLGDLEKLIDCAYIQPYTINHAKVIFLNQRPQSRSCKGSANMCFTCDRILQDSFHFCSLSCKVDYMVYQGQDLSSILYRIDESDFAYSQFDGLRVDGSEIIDDDGQITQSSFLEDPLQYRSTSCSNDNMGSSGISHQPVVVNKKKKGFLPGLVLSLSSRRKGAPQRAPLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
255586620	294	protein with unknown function [Ricinus c	0.939	0.795	0.800	1e-110
225423635	261	PREDICTED: uncharacterized protein LOC10	0.935	0.892	0.772	1e-104
297738003	236	unnamed protein product [Vitis vinifera]	0.931	0.983	0.775	1e-103
224071053	236	predicted protein [Populus trichocarpa]	0.895	0.944	0.791	1e-103
224137816	200	predicted protein [Populus trichocarpa]	0.803	1.0	0.740	5e-95
356532624	258	PREDICTED: uncharacterized protein LOC10	0.919	0.887	0.717	1e-93
356558252	255	PREDICTED: uncharacterized protein LOC10	0.919	0.898	0.717	7e-93
449472276	228	PREDICTED: uncharacterized protein LOC10	0.875	0.956	0.681	1e-87
16117799	233	zinc-binding protein [Pisum sativum]	0.875	0.935	0.702	6e-87
449503383	262	PREDICTED: uncharacterized protein LOC10	0.971	0.923	0.642	1e-85

>gi|255586620|ref|XP_002533942.1| protein with unknown function [Ricinus communis] gi|223526087|gb|EEF28440.1| protein with unknown function [Ricinus communis]

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 189/236 (80%), Positives = 211/236 (89%), Gaps = 2/236 (0%)

Query: 16  KPAWLQGLMGETFFGGCGVHENCRKNEKNIFCLLCCLSICPHCLPSHRSHPLLQVRRYVY 75
           KPAWL+GLM ETFFGGCGVHEN RKNEKNIFCLLCCLSICPHCLPSH SHPLLQVRRYVY
Sbjct: 59  KPAWLEGLMAETFFGGCGVHENSRKNEKNIFCLLCCLSICPHCLPSHHSHPLLQVRRYVY 118

Query: 76  HDVVRLGDLEKLIDCAYIQPYTINHAKVIFLNQRPQSRSCKGSANMCFTCDRILQDSFHF 135
           HDVVRLGDLEKLIDC+YIQPYTIN AKVIFLNQRPQSRSCKGSAN+CFTCDRILQ+ FHF
Sbjct: 119 HDVVRLGDLEKLIDCSYIQPYTINSAKVIFLNQRPQSRSCKGSANVCFTCDRILQEPFHF 178

Query: 136 CSLSCKVDYMVYQGQDLSSILYRIDESDFAYSQFDGLRVDGSEIIDDDGQITQSSFLEDP 195
           CSLSCKVD++V QG+DLS++LYR DESDFA+SQF+GLR+DGSEIID+D  I  SS LED 
Sbjct: 179 CSLSCKVDHLVDQGEDLSAVLYRFDESDFAFSQFEGLRMDGSEIIDEDSHIPPSSILEDQ 238

Query: 196 LQYRSTSCSNDNMGSSGISHQPVVVNKKKK--GFLPGLVLSLSSRRKGAPQRAPLS 249
           +Q++ +SCSN+ M +SGIS +  VV +KKK  GF+PG VLSLSSRRKGAP RAP S
Sbjct: 239 VQFKGSSCSNETMANSGISQEAEVVKRKKKGSGFIPGFVLSLSSRRKGAPHRAPFS 294

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423635|ref|XP_002275249.1| PREDICTED: uncharacterized protein LOC100268160 [Vitis vinifera]

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 187/242 (77%), Positives = 210/242 (86%), Gaps = 9/242 (3%)

Query: 12  NMEVKPAWLQGLMGETFFGGCGVHENCRKNEKNIFCLLCCLSICPHCLPSHRSHPLLQVR 71
           +M +KPAWL GLM ETFF GCGVHEN RKNEKN+FCL CC SICPHCLPSHRSHPLLQVR
Sbjct: 25  DMVMKPAWLDGLMAETFFAGCGVHENRRKNEKNVFCLECCQSICPHCLPSHRSHPLLQVR 84

Query: 72  RYVYHDVVRLGDLEKLIDCAYIQPYTINHAKVIFLNQRPQSRSCKGSANMCFTCDRILQD 131
           RYVYHDVVRL DLEKLI+C+YIQPYTIN AKVIFLNQRPQSRSCKGSAN+CFTCDRILQ+
Sbjct: 85  RYVYHDVVRLDDLEKLINCSYIQPYTINSAKVIFLNQRPQSRSCKGSANICFTCDRILQE 144

Query: 132 SFHFCSLSCKVDYMVYQGQDLSSILYRIDESDFAYSQFDGLRVDGSEIIDDDGQITQSSF 191
            F FCS+SCKVDYMVYQG+DLSSI+YR DESDFAYSQF+GLR++     D++GQIT +S 
Sbjct: 145 PFRFCSISCKVDYMVYQGEDLSSIIYRFDESDFAYSQFEGLRME-----DEEGQITPNSI 199

Query: 192 LEDPLQYRSTSC-SNDNMGSSGISHQP-VVVNKKKK--GFLPGLVLSLSSRRKGAPQRAP 247
           LEDPLQ++++SC SN+  G+SGIS  P  VV KKKK  GFLPG  LSLSSRRKGAP R+P
Sbjct: 200 LEDPLQFKASSCSSNETSGNSGISRDPEAVVRKKKKSTGFLPGNFLSLSSRRKGAPHRSP 259

Query: 248 LS 249
           LS
Sbjct: 260 LS 261

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738003|emb|CBI27204.3| unnamed protein product [Vitis vinifera]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 187/241 (77%), Positives = 209/241 (86%), Gaps = 9/241 (3%)

Query: 13  MEVKPAWLQGLMGETFFGGCGVHENCRKNEKNIFCLLCCLSICPHCLPSHRSHPLLQVRR 72
           M +KPAWL GLM ETFF GCGVHEN RKNEKN+FCL CC SICPHCLPSHRSHPLLQVRR
Sbjct: 1   MVMKPAWLDGLMAETFFAGCGVHENRRKNEKNVFCLECCQSICPHCLPSHRSHPLLQVRR 60

Query: 73  YVYHDVVRLGDLEKLIDCAYIQPYTINHAKVIFLNQRPQSRSCKGSANMCFTCDRILQDS 132
           YVYHDVVRL DLEKLI+C+YIQPYTIN AKVIFLNQRPQSRSCKGSAN+CFTCDRILQ+ 
Sbjct: 61  YVYHDVVRLDDLEKLINCSYIQPYTINSAKVIFLNQRPQSRSCKGSANICFTCDRILQEP 120

Query: 133 FHFCSLSCKVDYMVYQGQDLSSILYRIDESDFAYSQFDGLRVDGSEIIDDDGQITQSSFL 192
           F FCS+SCKVDYMVYQG+DLSSI+YR DESDFAYSQF+GLR++     D++GQIT +S L
Sbjct: 121 FRFCSISCKVDYMVYQGEDLSSIIYRFDESDFAYSQFEGLRME-----DEEGQITPNSIL 175

Query: 193 EDPLQYRSTSC-SNDNMGSSGISHQP-VVVNKKKK--GFLPGLVLSLSSRRKGAPQRAPL 248
           EDPLQ++++SC SN+  G+SGIS  P  VV KKKK  GFLPG  LSLSSRRKGAP R+PL
Sbjct: 176 EDPLQFKASSCSSNETSGNSGISRDPEAVVRKKKKSTGFLPGNFLSLSSRRKGAPHRSPL 235

Query: 249 S 249
           S
Sbjct: 236 S 236

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071053|ref|XP_002303348.1| predicted protein [Populus trichocarpa] gi|222840780|gb|EEE78327.1| predicted protein [Populus trichocarpa]

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 186/235 (79%), Positives = 205/235 (87%), Gaps = 12/235 (5%)

Query: 17  PAWLQGLMGETFFGGCGVHENCRKNEKNIFCLLCCLSICPHCLPSHRSHPLLQVRRYVYH 76
           PAWL+GLM ETFFGGCGVHE+ RKNEKN+FCLLCCLSICPHCLPSHRSHPLLQVRRYVYH
Sbjct: 12  PAWLEGLMAETFFGGCGVHESRRKNEKNVFCLLCCLSICPHCLPSHRSHPLLQVRRYVYH 71

Query: 77  DVVRLGDLEKLIDCAYIQPYTINHAKVIFLNQRPQSRSCKGSANMCFTCDRILQDSFHFC 136
           DVVRLGDLEKLIDC+YIQPYTIN AKVIFLNQRPQSRSCKGS+N CFTCDRILQD FHFC
Sbjct: 72  DVVRLGDLEKLIDCSYIQPYTINSAKVIFLNQRPQSRSCKGSSNNCFTCDRILQDPFHFC 131

Query: 137 SLSCKVDYMVYQGQDLSSILYRIDESDFAYSQFDGLRVDGSEIIDDDGQITQSSFLEDPL 196
           SLSCKV+++V QG DLS+ILYRIDESDFA+SQF+GLR+DGSEIIDDDGQIT SS  E+P 
Sbjct: 132 SLSCKVNHLVDQGDDLSAILYRIDESDFAFSQFEGLRMDGSEIIDDDGQITPSSIFENPS 191

Query: 197 QYRSTSCSNDNMGSSGISHQPVVVNKKKK--GFLPGLVLSLSSRRKGAPQRAPLS 249
           Q+R +SCSN          +P V+ KK+K  GFLPG   SLSSRRKG+P RAPLS
Sbjct: 192 QHRGSSCSN----------EPEVLGKKEKKSGFLPGNFFSLSSRRKGSPHRAPLS 236

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137816|ref|XP_002326447.1| predicted protein [Populus trichocarpa] gi|222833769|gb|EEE72246.1| predicted protein [Populus trichocarpa]

 Score =  353 bits (905), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 174/235 (74%), Positives = 190/235 (80%), Gaps = 35/235 (14%)

Query: 15  VKPAWLQGLMGETFFGGCGVHENCRKNEKNIFCLLCCLSICPHCLPSHRSHPLLQVRRYV 74
           +KPAWL+GLM ETFFGGCGVHEN RKNEKN+FCLLCCLSICPHCLPSHRSHPLLQVRRYV
Sbjct: 1   MKPAWLEGLMAETFFGGCGVHENRRKNEKNVFCLLCCLSICPHCLPSHRSHPLLQVRRYV 60

Query: 75  YHDVVRLGDLEKLIDCAYIQPYTINHAKVIFLNQRPQSRSCKGSANMCFTCDRILQDSFH 134
           YHDVVRLGDLEKLIDC+YIQPYTIN+AKVIFLNQRPQSRSCKGSAN CFTCDRILQD FH
Sbjct: 61  YHDVVRLGDLEKLIDCSYIQPYTINNAKVIFLNQRPQSRSCKGSANNCFTCDRILQDPFH 120

Query: 135 FCSLSCKVDYMVYQGQDLSSILYRIDESDFAYSQFDGLRVDGSEIIDDDGQITQSSFLED 194
           FCSLSCKV+++V QG+DLS+ILYRIDESDFA+SQF+GLR+D SEIIDD+GQIT SS LE+
Sbjct: 121 FCSLSCKVNHLVDQGEDLSAILYRIDESDFAFSQFEGLRMDSSEIIDDEGQITPSSILEN 180

Query: 195 PLQYRSTSCSNDNMGSSGISHQPVVVNKKKKGFLPGLVLSLSSRRKGAPQRAPLS 249
           PLQYR                                    SSRRKG+P RAPLS
Sbjct: 181 PLQYRG-----------------------------------SSRRKGSPHRAPLS 200

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532624|ref|XP_003534871.1| PREDICTED: uncharacterized protein LOC100806234 [Glycine max]

 Score =  348 bits (892), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 173/241 (71%), Positives = 194/241 (80%), Gaps = 12/241 (4%)

Query: 11  MNMEVKPAWLQGLMGETFFGGCGVHENCRKNEKNIFCLLCCLSICPHCLPSHRSHPLLQV 70
           MNM  KPAWL+ LM ETFFGGCGVH++ RKNEKN+FCL CCLSICPHCL SHRSHPLLQV
Sbjct: 28  MNMNEKPAWLERLMAETFFGGCGVHQDRRKNEKNVFCLHCCLSICPHCLSSHRSHPLLQV 87

Query: 71  RRYVYHDVVRLGDLEKLIDCAYIQPYTINHAKVIFLNQRPQSRSCKGSANMCFTCDRILQ 130
           RRYVYHDV+RL DLEKLIDC+ IQPYTIN AKV+FLNQRPQSR+CKG AN CFTCDRILQ
Sbjct: 88  RRYVYHDVIRLDDLEKLIDCSNIQPYTINSAKVVFLNQRPQSRTCKGLANACFTCDRILQ 147

Query: 131 DSFHFCSLSCKVDYMVYQGQDLSSILYRIDESDFAYSQFDGLRVDGSEIIDDDGQITQSS 190
           + FHFCSLSCKVDYMVY GQ L SIL+R DESDFA SQF+GLRVDGSE+ID+D Q   SS
Sbjct: 148 EPFHFCSLSCKVDYMVYAGQSLGSILHRFDESDFAISQFEGLRVDGSEVIDEDTQFAPSS 207

Query: 191 FLEDPLQYRSTSCSNDNMGSSGISHQPVVVNKKKKG--FLPGLVLSLSSRRKGAPQRAPL 248
                  Y +T  +++++    IS +P    KK K   FLPG+VLSL SRRKGAP RAPL
Sbjct: 208 ------SYSNTEATSNSV----ISCEPNNNVKKGKANRFLPGIVLSLGSRRKGAPHRAPL 257

Query: 249 S 249
           S
Sbjct: 258 S 258

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558252|ref|XP_003547421.1| PREDICTED: uncharacterized protein LOC100806558 [Glycine max]

 Score =  346 bits (887), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 173/241 (71%), Positives = 192/241 (79%), Gaps = 12/241 (4%)

Query: 11  MNMEVKPAWLQGLMGETFFGGCGVHENCRKNEKNIFCLLCCLSICPHCLPSHRSHPLLQV 70
           MNM  KPAWL+ LM ETFFG CGVH++ RKNEKN+FCL CCLSICPHCL SHRSHPLLQV
Sbjct: 25  MNMNEKPAWLERLMAETFFGACGVHQDRRKNEKNVFCLHCCLSICPHCLSSHRSHPLLQV 84

Query: 71  RRYVYHDVVRLGDLEKLIDCAYIQPYTINHAKVIFLNQRPQSRSCKGSANMCFTCDRILQ 130
           RRYVYHDV+RL DLEKLIDC+ IQPYTIN AKVIFLNQRPQSR+CKG AN CFTCDRILQ
Sbjct: 85  RRYVYHDVIRLDDLEKLIDCSNIQPYTINSAKVIFLNQRPQSRTCKGPANSCFTCDRILQ 144

Query: 131 DSFHFCSLSCKVDYMVYQGQDLSSILYRIDESDFAYSQFDGLRVDGSEIIDDDGQITQSS 190
           + FHFCSLSCKVDYMVY GQ L SIL+R DESDFA SQF+GLRVDGSE+ ++D QI  SS
Sbjct: 145 EPFHFCSLSCKVDYMVYAGQSLGSILHRFDESDFAISQFEGLRVDGSEVTEEDTQIAPSS 204

Query: 191 FLEDPLQYRSTSCSNDNMGSSGISHQPVVVNKKKKG--FLPGLVLSLSSRRKGAPQRAPL 248
                  Y +T  +++    S IS +P    KK K   FLPG+VLSL SRRKGAP RAPL
Sbjct: 205 ------SYSNTEATSN----SVISCEPNNNVKKGKANRFLPGIVLSLGSRRKGAPHRAPL 254

Query: 249 S 249
           S
Sbjct: 255 S 255

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449472276|ref|XP_004153544.1| PREDICTED: uncharacterized protein LOC101205397 [Cucumis sativus]

 Score =  328 bits (841), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 169/248 (68%), Positives = 193/248 (77%), Gaps = 30/248 (12%)

Query: 8   VVMMNME---VKPAWLQGLMGETFFGGCGVHENCRKNEKNIFCLLCCLSICPHCLPSHRS 64
           + MMNM     KPAWLQ LM +TFFG C +HEN RK+EKN+FCL CCLSICPHCLPSHRS
Sbjct: 5   MTMMNMNQCGSKPAWLQALMADTFFGTCLLHENRRKSEKNVFCLHCCLSICPHCLPSHRS 64

Query: 65  HPLLQVRRYVYHDVVRLGDLEKLIDCAYIQPYTINHAKVIFLNQRPQSRSCKG--SANMC 122
           HPLLQVRRYVYHDV+RLGDLEKLIDC++IQPYTIN AKVIFLN RPQSR CK   S N C
Sbjct: 65  HPLLQVRRYVYHDVIRLGDLEKLIDCSHIQPYTINGAKVIFLNYRPQSRPCKAGSSTNAC 124

Query: 123 FTCDRILQDSFHFCSLSCKVDYMVYQGQDLSSILYRIDESDFAYSQFDGLRVDGSEIIDD 182
           FTCDRILQ+ FHFCSLSCKVD+MVYQG+DL SIL+R +ESDF+YSQF+GLRVDG E +++
Sbjct: 125 FTCDRILQEPFHFCSLSCKVDHMVYQGEDLYSILHRFNESDFSYSQFEGLRVDGLEGMEE 184

Query: 183 DGQITQSSFLEDPLQYRSTSCSNDNMGSSGISHQPVVVNKKKKGFLP-GLVLSLSSRRKG 241
           DGQ+T +S +ED  Q+     +ND                    FLP G+VLSLSSRRKG
Sbjct: 185 DGQMTPNSVVEDSSQHF----NND--------------------FLPAGIVLSLSSRRKG 220

Query: 242 APQRAPLS 249
           APQRAPLS
Sbjct: 221 APQRAPLS 228

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|16117799|dbj|BAB69816.1| zinc-binding protein [Pisum sativum]

 Score =  326 bits (835), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 165/235 (70%), Positives = 187/235 (79%), Gaps = 17/235 (7%)

Query: 16  KPAWLQGLMGETFFGGCGVHENCRKNEKNIFCLLCCLSICPHCLPSHRSHPLLQVRRYVY 75
           KPAWL+ LM ETFFG CGVH+N RKNEKNIFCL CCLSICPHCL SH SHPLLQVRRYVY
Sbjct: 15  KPAWLERLMDETFFGDCGVHKNRRKNEKNIFCLHCCLSICPHCLSSHTSHPLLQVRRYVY 74

Query: 76  HDVVRLGDLEKLIDCAYIQPYTINHAKVIFLNQRPQSRSCKGSANMCFTCDRILQDSFHF 135
           H+V+RL DLEKLIDC+ IQPYTIN AKVIFLNQRPQSRSCK +AN+CFTCDRILQD FHF
Sbjct: 75  HNVIRLDDLEKLIDCSNIQPYTINSAKVIFLNQRPQSRSCKVTANVCFTCDRILQDPFHF 134

Query: 136 CSLSCKVDYMVYQGQDLSSILYRIDESDFAYSQFDGLRVDGSEIIDDD-GQITQSSFLED 194
           CSLSCKV+YMVY+G++LS+IL+R DESDFA SQF+GLRVDGSE+ID+D  QI  SS    
Sbjct: 135 CSLSCKVEYMVYEGENLSNILHRFDESDFAISQFEGLRVDGSEVIDEDNNQIGPSS---- 190

Query: 195 PLQYRSTSCSNDNMGSSGISHQPVVVNKKKKGFLPGLVLSLSSRRKGAPQRAPLS 249
                + S  N++  +S     P+         LP +VLSL SRRKGAPQRAPLS
Sbjct: 191 ----SNYSIINEDQATSNNRFLPLP--------LPAIVLSLGSRRKGAPQRAPLS 233

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449503383|ref|XP_004161975.1| PREDICTED: uncharacterized protein LOC101226532 [Cucumis sativus]

 Score =  322 bits (824), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 162/252 (64%), Positives = 194/252 (76%), Gaps = 10/252 (3%)

Query: 8   VVMMNME---VKPAWLQGLMGETFFGGCGVHENCRKNEKNIFCLLCCLSICPHCLPSHRS 64
           + MMNM     KPAWLQ LM +TFFG C +HEN RK+EKN+FCL CCLSICPHCLPSHRS
Sbjct: 5   MTMMNMNQCGSKPAWLQALMADTFFGTCLLHENRRKSEKNVFCLHCCLSICPHCLPSHRS 64

Query: 65  HPLLQVRRYVYHDVVRLGDLEKLIDCAYIQPYTINHAKVIFLNQRPQSRSCKG--SANMC 122
           HPLLQVRRYVYHDV+RLGDLEKLIDC++IQPYTIN AKVIFLN RPQSR CK   S N C
Sbjct: 65  HPLLQVRRYVYHDVIRLGDLEKLIDCSHIQPYTINGAKVIFLNYRPQSRPCKAGSSTNAC 124

Query: 123 FTCDRILQDSFHFCSLSCKVDYMVYQGQDLSSILYRIDESDFAYSQFDGLRVDGSEIIDD 182
           FTCDRILQ+ FHFCSLSCKVD+MVYQG+DL SIL+R +ESDF+YSQF+GLRVDG E +++
Sbjct: 125 FTCDRILQEPFHFCSLSCKVDHMVYQGEDLYSILHRFNESDFSYSQFEGLRVDGLEGMEE 184

Query: 183 DGQITQSSFLEDPLQY--RSTSCSNDN-MGSSGISHQPVVVNKKKKG--FLPGLVLSLSS 237
           DGQ+T +S +ED  Q+  +S+SCSN N    + +S    +  +K K   F P  +  LS+
Sbjct: 185 DGQMTPNSVVEDSSQHFNKSSSCSNMNDSAPTNVSSGTHIFKRKTKAPIFFPPELFYLSA 244

Query: 238 RRKGAPQRAPLS 249
             + AP +  LS
Sbjct: 245 AEEKAPLKGLLS 256

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
TAIR|locus:2015761	243	AT1G31040 [Arabidopsis thalian	0.931	0.954	0.656	3.2e-81
TAIR|locus:1009023224	256	AT2G12646 "AT2G12646" [Arabido	0.839	0.816	0.458	3.3e-51
TAIR|locus:2101881	245	AT3G60670 [Arabidopsis thalian	0.562	0.571	0.571	1.1e-46
TAIR|locus:2009879	216	AT1G43000 [Arabidopsis thalian	0.694	0.800	0.411	7.1e-34
TAIR|locus:2011721	245	AT1G76590 [Arabidopsis thalian	0.570	0.579	0.431	3e-33
TAIR|locus:2035614	213	AT1G32700 [Arabidopsis thalian	0.506	0.591	0.472	6.2e-33
TAIR|locus:2057867	189	AT2G27930 [Arabidopsis thalian	0.530	0.698	0.458	1.6e-32
TAIR|locus:2141070	227	AT4G17900 [Arabidopsis thalian	0.506	0.555	0.468	6.9e-32
TAIR|locus:2037405	246	AT1G21000 [Arabidopsis thalian	0.903	0.914	0.360	1.3e-31
TAIR|locus:2178580	226	AT5G46710 [Arabidopsis thalian	0.506	0.557	0.406	2.5e-28

TAIR|locus:2015761 AT1G31040 [Arabidopsis thaliana (taxid:3702)]

 Score = 815 (292.0 bits), Expect = 3.2e-81, P = 3.2e-81
 Identities = 164/250 (65%), Positives = 188/250 (75%)

Query:     5 DDEVVMMNMEVKPAWLQGLMGETFFGGCGVHENCRKNEKNIFCLLCCLSICPHCLPSHRS 64
             ++E +MM M  KPAWL+GLM ETFF  CG+HE  RK+EKN+FCLLCCLS+CPHCLPSHRS
Sbjct:     7 EEEEMMMMMATKPAWLEGLMAETFFSSCGIHETRRKSEKNVFCLLCCLSVCPHCLPSHRS 66

Query:    65 HPLLQVRRYVYHDVVRLGDLEKLIDCAYIQPYTINHAKVIFLNQRPQSRSCKGSANMCFT 124
             HPLLQVRRYVYHDVVRL DLEKLIDC+Y+QPYTIN AKVIFLNQR QSR+ K S+N+CFT
Sbjct:    67 HPLLQVRRYVYHDVVRLSDLEKLIDCSYVQPYTINGAKVIFLNQRQQSRA-KVSSNVCFT 125

Query:   125 CDRILQDSFHFCSLSCKVDYMVYQGQDLSSILYRIDESDFAYSQFDGLRVDGSEIIDDDG 184
             CDRILQ+ FHFCSLSCKVDY+ YQG DLSSILYRIDESDF    F+GLR+DG    D  G
Sbjct:   126 CDRILQEPFHFCSLSCKVDYLSYQGDDLSSILYRIDESDFT---FEGLRMDGH---DQLG 179

Query:   185 QITQSSFLEDPLQYRSTSCSNDNMGSSGISHQPVVVNKKKK----GFLPGLVLS-LSSRR 239
             +I+     ED L     S   +N      SH+      KKK     +LPG+VLS L +RR
Sbjct:   180 EISTMEDGEDILVISDESEQGNN------SHKKEKKKSKKKKPESNYLPGMVLSSLGNRR 233

Query:   240 KGAPQRAPLS 249
             KGAP RAP S
Sbjct:   234 KGAPHRAPFS 243

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1009023224 AT2G12646 "AT2G12646" [Arabidopsis thaliana (taxid:3702)]

 Score = 497 (180.0 bits), Expect = 3.3e-51, Sum P(2) = 3.3e-51
 Identities = 100/218 (45%), Positives = 133/218 (61%)

Query:    16 KPAWLQGLMGETFFGGCGVHENCRKNEKNIFCLLCCLSICPHCLPSHRSHPLLQVRRYVY 75
             KPAWL  L  E FF GC  HE  +KNE+N+ CL CC S+CPHC+PSHR H LLQVRRYVY
Sbjct:     5 KPAWLDALYAEKFFVGCPYHETAKKNERNVCCLDCCTSLCPHCVPSHRFHRLLQVRRYVY 64

Query:    76 HDVVRLGDLEKLIDCAYIQPYTINHAKVIFLNQRPQSRSCKGSANMCFTCDRILQDSFHF 135
             HDVVRL DL+KLIDC+ +Q YTIN AKV+F+ +RPQ+R  KG+ N C +CDR LQ+ +  
Sbjct:    65 HDVVRLEDLQKLIDCSNVQAYTINSAKVVFIKKRPQNRQFKGAGNYCTSCDRSLQEPYIH 124

Query:   136 CSLSCKVDYMVYQGQDLSSILYRIDE----SDFAYSQFDGLRVDGSEIIDDDGQITQSSF 191
             CSL CKVD+++ + +D++  L          D+   Q D L  D     +          
Sbjct:   125 CSLGCKVDFVMKRYRDITPFLKPCHTLTLGPDYIIPQ-DLLTDDEVAAYETPRSTVVDG- 182

Query:   192 LEDPLQYRSTSCSNDNMGSSGISHQPV--VVNKKKKGF 227
              ++ + + S S  N+N G++         VV KK+ GF
Sbjct:   183 -DESMSWSSASSDNNNAGAAAAYAATTTHVVRKKRTGF 219

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2101881 AT3G60670 [Arabidopsis thaliana (taxid:3702)]

 Score = 459 (166.6 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
 Identities = 80/140 (57%), Positives = 104/140 (74%)

Query:    17 PAWLQGLMGETFFGGCGVHENCRKNEKNIFCLLCCLSICPHCLPSHRSHPLLQVRRYVYH 76
             PAWL+ L+ + FF  C  HE+ +KNEKNI C+ CCL+ICPHCL SH SH LLQ+RRYVY 
Sbjct:     7 PAWLEVLLKDKFFNACLDHEDDKKNEKNILCIDCCLTICPHCLSSHTSHRLLQIRRYVYR 66

Query:    77 DVVRLGDLEKLIDCAYIQPYTINHAKVIFLNQRPQSRSCKGSANMCFTCDRILQDSFHFC 136
             DV+R+ D  KL+DC+ IQPYT N +KV+F+N+RPQSR  +GS N+C TCDR LQ  + FC
Sbjct:    67 DVLRVEDGSKLMDCSLIQPYTTNSSKVVFINERPQSRQFRGSGNICITCDRSLQSPYLFC 126

Query:   137 SLSCKVDYMVYQGQDLSSIL 156
              LSCK+  ++ + + LS  L
Sbjct:   127 CLSCKISDVIMRQRGLSGFL 146

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=ISS

TAIR|locus:2009879 AT1G43000 [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 7.1e-34, Sum P(2) = 7.1e-34
 Identities = 74/180 (41%), Positives = 105/180 (58%)

Query:    10 MMNMEVK-PAWLQGLMGETFFGGCGVHENCRKNEKNIFCLLCC-LSICPHCLPSHRSHPL 67
             M N +V  P WL  ++   +F  C +H    K+E N+FCL C   + C  CL  HR+H +
Sbjct:     1 MENDDVMTPPWLTPMLRADYFVTCSIHSQSSKSECNLFCLDCSGNAFCSSCLAHHRTHRV 60

Query:    68 LQVRRYVYHDVVRLGDLEKLIDCAYIQPYTINHAKVIFLNQRPQSRSCKGSANMCFTCDR 127
             +Q+RR  YH+VVR+ +++K ID + IQ Y IN AK+ FLN RPQ R+ K     C  C R
Sbjct:    61 IQIRRSSYHNVVRVSEIQKHIDISCIQTYVINSAKIFFLNARPQCRTGKSLNKTCQICSR 120

Query:   128 ILQDSFHFCSLSCKVDYMVYQGQDLSSILYRIDESDFAYSQFD-GL--R-VDGSEIIDDD 183
              L DSF FCSL+CK++  V  G+D +  L+   +SD +    + G+  R +DG  I  DD
Sbjct:   121 NLLDSFLFCSLACKLEG-VKNGEDPNLTLFHSGKSDDSSKIINTGICSRLIDGISIAVDD 179

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2011721 AT1G76590 [Arabidopsis thaliana (taxid:3702)]

 Score = 326 (119.8 bits), Expect = 3.0e-33, Sum P(2) = 3.0e-33
 Identities = 63/146 (43%), Positives = 91/146 (62%)

Query:     1 MGRGDDEVVMMNMEVKPAWLQGLMGETFFGGCGVHENCRKNEKNIFCLLCCL-SICPHCL 59
             M R +++   +N    P WL  ++   +F  C +H    K+E N+FCL C   + C +CL
Sbjct:     5 MMRAEEDNYNLN---PPPWLIPMLRANYFIPCSIHAASNKSECNMFCLDCSSEAFCSYCL 61

Query:    60 PSHRSHPLLQVRRYVYHDVVRLGDLEKLIDCAYIQPYTINHAKVIFLNQRPQSRSCKGSA 119
              +HR+H +LQ+RR  YH+VVR+ +++K ID + +Q Y IN A+++FLN+RPQ R  KG  
Sbjct:    62 LNHRNHRVLQIRRSSYHNVVRVNEIQKYIDISCVQTYIINSARIVFLNERPQPRIGKGVT 121

Query:   120 NMCFTCDRILQDSFHFCSLSCKVDYM 145
             N C  C R L DSF FCSL CK+  M
Sbjct:   122 NTCEICCRSLLDSFRFCSLGCKLGGM 147

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2035614 AT1G32700 [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 6.2e-33, Sum P(2) = 6.2e-33
 Identities = 60/127 (47%), Positives = 81/127 (63%)

Query:    17 PAWLQGLMGETFFGGCGVHENCRKNEKNIFCLLCCLS-ICPHCLPSHRSHPLLQVRRYVY 75
             P WL+ L+ E FF  C +H +  K+E N++CL C    +C  CL  H+ H  +Q+RR  Y
Sbjct:    12 PHWLKPLLREKFFVQCKLHADSHKSECNMYCLDCTNGPLCSLCLSFHKDHHAIQIRRSSY 71

Query:    76 HDVVRLGDLEKLIDCAYIQPYTINHAKVIFLNQRPQSRSCKGSANMCFTCDRILQDSFHF 135
             HDV+R+ +++K +D   +Q Y IN AKV+FLN+RPQ R  KG  N C  C R L DSF F
Sbjct:    72 HDVIRVSEIQKFLDITGVQTYVINSAKVVFLNERPQPRPGKGVINTCEVCYRSLVDSFRF 131

Query:   136 CSLSCKV 142
             CSL CK+
Sbjct:   132 CSLGCKI 138

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2057867 AT2G27930 [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
 Identities = 66/144 (45%), Positives = 87/144 (60%)

Query:    13 MEVKPAWLQGLMGETFFGGCGVHENCRKNEKNIFCLLCC-LSICPHCLPS-HRSHPLLQV 70
             ME +P WL+GL+   FF  C  H    +NE N+FCL C   + C +C  S H  HP+LQ+
Sbjct:     1 ME-EPKWLEGLLRTNFFSICPRHRETPRNECNMFCLSCQNAAFCFYCRSSFHIDHPVLQI 59

Query:    71 RRYVYHDVVRLGDLEKLIDCAYIQPYTINHAKVIFLNQRPQSR-SCKGSAN--------M 121
             RR  YHDVVR+ ++E  +D   +Q Y IN A+V+FLN+RPQ + S  G+A+         
Sbjct:    60 RRSSYHDVVRVSEIENALDIRGVQTYVINSARVLFLNERPQPKNSSHGAASSTPKTMSYF 119

Query:   122 CFTCDRILQDSFHFCSLSCKVDYM 145
             C TC R L D F FCSL CKV+ M
Sbjct:   120 CETCCRTLLDPFRFCSLGCKVEGM 143

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2141070 AT4G17900 [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 6.9e-32, Sum P(2) = 6.9e-32
 Identities = 60/128 (46%), Positives = 81/128 (63%)

Query:    17 PAWLQGLMGETFFGGCGVHENCRKNEKNIFCLLCCLS-ICPHCLPSHRSHPLLQVRRYVY 75
             P WL+ L+ E FF  C  H +  K+E N++CL C    +C  CL  H+ H  +Q+RR  Y
Sbjct:    34 PPWLKPLLKEQFFVHCKFHGDSHKSECNMYCLDCTNGPLCSLCLAHHKDHRTIQIRRSSY 93

Query:    76 HDVVRLGDLEKLIDCAYIQPYTINHAKVIFLNQRPQSRSCKGSANMCFTCDR-ILQDSFH 134
             HDV+R+ +++K +D   IQ Y IN AKV+FLN+RPQ R  KG  N C  C R ++ DSF 
Sbjct:    94 HDVIRVNEIQKYLDIGGIQTYVINSAKVVFLNERPQPRPGKGVTNTCKVCYRSLVDDSFR 153

Query:   135 FCSLSCKV 142
             FCSL CK+
Sbjct:   154 FCSLGCKI 161

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2037405 AT1G21000 [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 85/236 (36%), Positives = 123/236 (52%)

Query:    17 PAWLQGLMGETFFGGCGVHENCRKNEKNIFCLLCC-LSICPHCLPSHRSHPLLQVRRYVY 75
             P WL  ++  ++F  C +H +  KNE N+FCL C   + C +CL  H+ H ++Q+RR  Y
Sbjct:    16 PPWLMPMLRGSYFVPCSIHVDSNKNECNLFCLDCAGNAFCSYCLVKHKDHRVVQIRRSSY 75

Query:    76 HDVVRLGDLEKLIDCAYIQPYTINHAKVIFLNQRPQSRSCKGSANMCFTCDRILQDSFHF 135
             H+VVR+ +++K ID A +Q Y IN AK++FLN+RPQ R  KG  N C  C R L DSF F
Sbjct:    76 HNVVRVNEIQKFIDIACVQTYIINSAKIVFLNERPQPRIGKGVTNTCEICCRSLLDSFRF 135

Query:   136 CSLSCKVDYMVYQGQDLSSILYRIDESDFAYSQFDGLRVDGSEIIDDDGQITQSSFLEDP 195
             CSL CK+  M  +G DLS + + + +         G   D +       +    + L   
Sbjct:   136 CSLGCKLGGM-RRG-DLS-LTFSL-KGKHGREYLGGSESDEATTPTKMRKTNAFNRLMSG 191

Query:   196 LQYRSTSCSNDNMGSSGISHQPVVVNKKKKGFLPGL--VLSL--SSRRKGAPQRAP 247
             L   +     D+ G +G        ++    F PG   + +   SSRRKG P RAP
Sbjct:   192 LSISTVRF--DDYGPNGDQRSSSSGDEGGFSFSPGTPPIYNHRNSSRRKGVPHRAP 245

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2178580 AT5G46710 [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
 Identities = 52/128 (40%), Positives = 78/128 (60%)

Query:    17 PAWLQGLMGETFFGGCGVHENCRKNEKNIFCLLCCL-SICPHCLPSHRSHPLLQVRRYVY 75
             P WL+ L+ + FF  C  H +  + E  ++CL C   S C  CL  H +H  +Q+R   Y
Sbjct:    28 PIWLKPLLNQHFFAQCKFHGHLPRTECKMYCLDCTNDSFCSLCLSEHENHRTIQIRISSY 87

Query:    76 HDVVRLGDLEKLIDCAYIQPYTINHAKVIFLNQRPQSRSCKGSANMCFTCDR-ILQDSFH 134
             H+V ++ +++K +D + IQ Y IN +KV+FLN+RPQS+  KG  N C  C R + ++ F 
Sbjct:    88 HNVTKVDEIQKYLDISSIQTYVINSSKVLFLNERPQSKPGKGFTNACMVCYRGLAENCFR 147

Query:   135 FCSLSCKV 142
             FCS+ CKV
Sbjct:   148 FCSIGCKV 155

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00030128001 SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (261 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	249
pfam04640	72	pfam04640, PLATZ, PLATZ transcription factor	1e-41

>gnl|CDD|191051 pfam04640, PLATZ, PLATZ transcription factor

 Score =  136 bits (344), Expect = 1e-41
 Identities = 47/72 (65%), Positives = 55/72 (76%)

Query: 71  RRYVYHDVVRLGDLEKLIDCAYIQPYTINHAKVIFLNQRPQSRSCKGSANMCFTCDRILQ 130
           RR  YHDVVR+ D++KLID + +Q Y IN AKV+FLN+RPQSR  KGS N+C TCDR L 
Sbjct: 1   RRSSYHDVVRVSDIQKLIDISGVQTYVINSAKVVFLNERPQSRPGKGSGNICETCDRSLL 60

Query: 131 DSFHFCSLSCKV 142
           D F FCSL CKV
Sbjct: 61  DPFRFCSLGCKV 72

Plant AT-rich sequence and zinc-binding proteins (PLATZ) are zinc dependant DNA binding proteins. They bind to AT rich sequences and functions in transcriptional repression. Length = 72

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	249
PF04640	72	PLATZ: PLATZ transcription factor; InterPro: IPR00	100.0
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	96.51
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	95.43
smart00336	42	BBOX B-Box-type zinc finger.	94.49
PF12855	43	Ecl1: Life-span regulatory factor; InterPro: IPR02	87.07
PF03884	57	DUF329: Domain of unknown function (DUF329); Inter	87.03
PRK01343	57	zinc-binding protein; Provisional	80.81

>PF04640 PLATZ: PLATZ transcription factor; InterPro: IPR006734 This family includes a conserved region in several uncharacterised plant proteins

Probab=100.00  E-value=3.9e-39  Score=243.36  Aligned_cols=72  Identities=68%  Similarity=1.195  Sum_probs=71.1

Q ss_pred             EeccccceeeecccccccccCCeeeeEecCceEEeeecCCCCCCCCCCCCcccccccccCCCceeecccccc
Q 048158           71 RRYVYHDVVRLGDLEKLIDCAYIQPYTINHAKVIFLNQRPQSRSCKGSANMCFTCDRILQDSFHFCSLSCKV  142 (249)
Q Consensus        71 RR~sYhdVVRv~DIqkliD~S~IQtYvINsakVVFLn~RPq~r~~kg~~~~C~~C~R~L~d~~~FCSL~CKv  142 (249)
                      |||||||||||+|||||||||+||||+||++||||||+|||+++.+++++.|++|+|+|+|+|+||||+|||
T Consensus         1 Rr~sY~dVVrv~di~kl~D~s~IQtY~iNs~kVVfLn~Rpq~~~~~~~~~~C~~C~R~L~d~~~fCSl~CKv   72 (72)
T PF04640_consen    1 RRYSYHDVVRVSDIQKLLDCSGIQTYVINSAKVVFLNPRPQSRPSKGSGNICETCHRSLQDPYRFCSLSCKV   72 (72)
T ss_pred             CcccccceEEHHHhHhhccccccEEEEeCCceEEEEccCCcCCCCCCCCCccCCCCCCCCCCCeEEeeeEEC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999997

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.51  E-value=0.00048  Score=45.62  Aligned_cols=37  Identities=27%  Similarity=0.739  Sum_probs=29.9

Q ss_pred             ccCCCCCCCCCCcceeecccccccCCCcCCC-CCCCCeeEE
Q 048158           31 GCGVHENCRKNEKNIFCLLCCLSICPHCLPS-HRSHPLLQV   70 (249)
Q Consensus        31 ~C~~H~~~~knE~N~FCldC~~s~C~~C~~~-H~~H~vlQI   70 (249)
                      .|..|..   .+.++||.+|...+|..|... |++|.++.|
T Consensus         5 ~C~~H~~---~~~~~~C~~C~~~~C~~C~~~~H~~H~~~~i   42 (42)
T PF00643_consen    5 KCPEHPE---EPLSLFCEDCNEPLCSECTVSGHKGHKIVPI   42 (42)
T ss_dssp             B-SSTTT---SBEEEEETTTTEEEEHHHHHTSTTTSEEEEC
T ss_pred             cCccCCc---cceEEEecCCCCccCccCCCCCCCCCEEeEC
Confidence            5888874   348999999999999999765 999987754

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=95.43  E-value=0.012  Score=37.76  Aligned_cols=36  Identities=22%  Similarity=0.435  Sum_probs=28.4

Q ss_pred             ccCCCCCCCCCCcceeecccccccCCCcCC-CCCCCCeeE
Q 048158           31 GCGVHENCRKNEKNIFCLLCCLSICPHCLP-SHRSHPLLQ   69 (249)
Q Consensus        31 ~C~~H~~~~knE~N~FCldC~~s~C~~C~~-~H~~H~vlQ   69 (249)
                      .|+.|..   +...+||.+|...+|..|.. .|++|.++.
T Consensus         2 ~C~~H~~---~~~~~fC~~~~~~iC~~C~~~~H~~H~~~~   38 (39)
T cd00021           2 LCDEHGE---EPLSLFCETDRALLCVDCDLSVHSGHRRVP   38 (39)
T ss_pred             CCCccCC---cceEEEeCccChhhhhhcChhhcCCCCEee
Confidence            4788853   24689999999999999965 488898754

>smart00336 BBOX B-Box-type zinc finger

Probab=94.49  E-value=0.034  Score=36.05  Aligned_cols=35  Identities=29%  Similarity=0.761  Sum_probs=28.2

Q ss_pred             ccCCCCCCCCCCcceeecccccccCCCcCCC-CCCCCee
Q 048158           31 GCGVHENCRKNEKNIFCLLCCLSICPHCLPS-HRSHPLL   68 (249)
Q Consensus        31 ~C~~H~~~~knE~N~FCldC~~s~C~~C~~~-H~~H~vl   68 (249)
                      .|+.|..   ....+||.+|...+|..|... |++|+++
T Consensus         5 ~C~~h~~---~~~~~~C~~c~~~iC~~C~~~~H~~H~~~   40 (42)
T smart00336        5 KCDSHGD---EPAEFFCEECGALLCRTCDEAEHRGHTVV   40 (42)
T ss_pred             cCCCCCC---CceEEECCCCCcccccccChhhcCCCcee
Confidence            5777764   335899999999999999865 8889865

>PF12855 Ecl1: Life-span regulatory factor; InterPro: IPR024368 The fungal proteins in this entry are involved in the regulation of chronological life-span [, ]

Probab=87.07  E-value=0.16  Score=35.33  Aligned_cols=27  Identities=26%  Similarity=0.792  Sum_probs=23.4

Q ss_pred             CCccccccccc---CCCceeecccccccce
Q 048158          119 ANMCFTCDRIL---QDSFHFCSLSCKVDYM  145 (249)
Q Consensus       119 ~~~C~~C~R~L---~d~~~FCSL~CKv~~v  145 (249)
                      .+.|.+|+|.+   .+...|||-.|++...
T Consensus         6 ~~yC~~Cdk~~~~~~~~~lYCSe~Cr~~D~   35 (43)
T PF12855_consen    6 NDYCIVCDKQIDPPDDGSLYCSEECRLKDQ   35 (43)
T ss_pred             hhHHHHhhccccCCCCCccccCHHHHhHhh
Confidence            46899999999   6779999999999744

Overexpression of these proteins has been shown to extend the chronological life-span of wild-type strains. The mechanism by which this happens is not known, but microarray data suggests that they may function as pleiptropic stress regulators.

>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc

Probab=87.03  E-value=0.19  Score=36.95  Aligned_cols=39  Identities=28%  Similarity=0.583  Sum_probs=19.9

Q ss_pred             cccccccccCC----Cce-eecccccccceeeccCCcccccccccCCCccccccc
Q 048158          121 MCFTCDRILQD----SFH-FCSLSCKVDYMVYQGQDLSSILYRIDESDFAYSQFD  170 (249)
Q Consensus       121 ~C~~C~R~L~d----~~~-FCSL~CKv~~v~~~~~dls~~l~~~~~~d~~~p~~e  170 (249)
                      .|-+|++...-    +|+ |||-.||+-       ||-    +|...++.+|.-+
T Consensus         4 ~CP~C~k~~~~~~~n~~rPFCS~RCk~i-------DLg----~W~~e~Y~Ip~~~   47 (57)
T PF03884_consen    4 KCPICGKPVEWSPENPFRPFCSERCKLI-------DLG----RWANEEYRIPGEP   47 (57)
T ss_dssp             E-TTT--EEE-SSSSS--SSSSHHHHHH-------HHS-----SSSSS----SSS
T ss_pred             cCCCCCCeecccCCCCcCCcccHhhccc-------CHH----HHhcCCcccCCCC
Confidence            58999998765    565 999999986       443    4545566665533

YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.

>PRK01343 zinc-binding protein; Provisional

Probab=80.81  E-value=1.2  Score=32.97  Aligned_cols=39  Identities=23%  Similarity=0.436  Sum_probs=28.0

Q ss_pred             CCcccccccccCCCc-eeecccccccceeeccCCcccccccccCCCccccc
Q 048158          119 ANMCFTCDRILQDSF-HFCSLSCKVDYMVYQGQDLSSILYRIDESDFAYSQ  168 (249)
Q Consensus       119 ~~~C~~C~R~L~d~~-~FCSL~CKv~~v~~~~~dls~~l~~~~~~d~~~p~  168 (249)
                      ...|-+|++....++ -|||-.||.-       ||.    +|...++.+|-
T Consensus         9 ~~~CP~C~k~~~~~~rPFCS~RC~~i-------DLg----~W~~e~Y~Ip~   48 (57)
T PRK01343          9 TRPCPECGKPSTREAYPFCSERCRDI-------DLN----RWLSGSYVIPG   48 (57)
T ss_pred             CCcCCCCCCcCcCCCCcccCHHHhhh-------hHH----HHhCCCcccCC
Confidence            356999999876554 7999999986       444    45455666654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	249
3ddt_A	48	E3 ubiquitin-protein ligase TRIM63; zinc-binding m	95.1
2d8u_A	64	Ubiquitin ligase TRIM63; tripartite motif-containi	95.03
2yvr_A	50	Transcription intermediary factor 1-beta; ZF-B_BOX	94.64
1fre_A	42	Nuclear factor XNF7; zinc-binding protein, BBOX, d	94.51
2did_A	53	Tripartite motif protein 39; ZF-B-box domian, Zn b	93.48
2yrg_A	59	Tripartite motif-containing protein 5; B-box domai	91.96
2csv_A	72	Tripartite motif protein 29; ZF-B_BOX domain, TRIM	90.28
2dja_A	84	Midline-2; tripartite motif protein 1, ZF-B_BOX, s	90.18
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	89.59
2egm_A	57	Tripartite motif-containing protein 41; ZF-B_BOX d	89.19

>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A

Probab=95.10  E-value=0.0075  Score=40.05  Aligned_cols=39  Identities=28%  Similarity=0.676  Sum_probs=31.1

Q ss_pred             cCccCCCCCCCCCCcceeecccccccCCCcC--CCCCCCCeeEE
Q 048158           29 FGGCGVHENCRKNEKNIFCLLCCLSICPHCL--PSHRSHPLLQV   70 (249)
Q Consensus        29 F~~C~~H~~~~knE~N~FCldC~~s~C~~C~--~~H~~H~vlQI   70 (249)
                      ...|+.|..   ...++||.+|...+|..|.  ..|++|+++.|
T Consensus         6 ~~~C~~H~~---e~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~l   46 (48)
T 3ddt_A            6 HPMCKEHED---EKINIYCLTCEVPTCSMCKVFGIHKACEVAPL   46 (48)
T ss_dssp             SCBCSSSTT---SBCCEEETTTTEEECHHHHHHSTTTTSCEEEC
T ss_pred             CCcCCCCCC---ccccEEcCCCCeeEcccccCCCcCCCCcEEeC
Confidence            356998863   2367999999999999995  47999998654

>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=95.03  E-value=0.0069  Score=42.07  Aligned_cols=37  Identities=30%  Similarity=0.697  Sum_probs=29.6

Q ss_pred             CccCCCCCCCCCCcceeecccccccCCCcC--CCCCCCCeeE
Q 048158           30 GGCGVHENCRKNEKNIFCLLCCLSICPHCL--PSHRSHPLLQ   69 (249)
Q Consensus        30 ~~C~~H~~~~knE~N~FCldC~~s~C~~C~--~~H~~H~vlQ   69 (249)
                      ..|+.|..   ...++||.+|...+|..|.  ..|++|+++-
T Consensus         9 ~~C~~H~~---e~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~   47 (64)
T 2d8u_A            9 PMCKEHED---EKINIYCLTCEVPTCSMCKVFGIHKACEVAP   47 (64)
T ss_dssp             CCCSSCTT---CCCCSEESSSCCCCCSHHHHSSSTTSSCEEC
T ss_pred             CcCcCcCC---CccceEcCcCCceeCccccCCCcCCCCCeeC
Confidence            35999954   2478999999999999995  4799998653

>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}

Probab=94.64  E-value=0.009  Score=39.81  Aligned_cols=37  Identities=27%  Similarity=0.633  Sum_probs=29.2

Q ss_pred             ccCCCCCCCCCCcceeecccccccCCCcC-CCCCCCCeeEE
Q 048158           31 GCGVHENCRKNEKNIFCLLCCLSICPHCL-PSHRSHPLLQV   70 (249)
Q Consensus        31 ~C~~H~~~~knE~N~FCldC~~s~C~~C~-~~H~~H~vlQI   70 (249)
                      .|+.|..   ...++||.+|...+|..|. ..|++|+++-|
T Consensus         8 ~C~~H~~---e~l~lfC~~~~~~iC~~C~~~~H~~H~~~~l   45 (50)
T 2yvr_A            8 YCNVHKH---EPLVLFCESCDTLTCRDCQLNAHKDHQYQFL   45 (50)
T ss_dssp             BCSSSTT---CBCCEEETTTTEEECHHHHHTTTTTCCEEET
T ss_pred             cCcCCCC---CCEEEEeCCCCEEEecccCCCcCCCCceecH
Confidence            5999854   2478999999999999995 46889986543

>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1

Probab=94.51  E-value=0.023  Score=36.42  Aligned_cols=35  Identities=26%  Similarity=0.526  Sum_probs=28.8

Q ss_pred             ccCCCCCCCCCCcceeecccccccCCCcCC--CCCCCCeeE
Q 048158           31 GCGVHENCRKNEKNIFCLLCCLSICPHCLP--SHRSHPLLQ   69 (249)
Q Consensus        31 ~C~~H~~~~knE~N~FCldC~~s~C~~C~~--~H~~H~vlQ   69 (249)
                      .|+.|.    ....+||.+|...+|..|..  .|++|+++.
T Consensus         5 ~C~~H~----e~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~   41 (42)
T 1fre_A            5 KCSEHD----ERLKLYCKDDGTLSCVICRDSLKHASHNFLP   41 (42)
T ss_dssp             CCCSSC----SSCCCCCCSSSSSSCCTTSSCSSCTTCCCCC
T ss_pred             cchhhC----CeeeEEeCCCCeEEeccCCCCCCCCCCcEec
Confidence            588885    24789999999999999975  599998753

>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A

Probab=93.48  E-value=0.024  Score=38.23  Aligned_cols=36  Identities=25%  Similarity=0.590  Sum_probs=29.7

Q ss_pred             ccCCCCCCCCCCcceeecccccccCCCcCC--CCCCCCeeEE
Q 048158           31 GCGVHENCRKNEKNIFCLLCCLSICPHCLP--SHRSHPLLQV   70 (249)
Q Consensus        31 ~C~~H~~~~knE~N~FCldC~~s~C~~C~~--~H~~H~vlQI   70 (249)
                      .|+.|.    ....+||.+|...+|..|..  .|++|+++-|
T Consensus        10 ~C~~H~----e~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~l   47 (53)
T 2did_A           10 LCPQHH----EALSLFCYEDQEAVCLICAISHTHRAHTVVPL   47 (53)
T ss_dssp             BCTTTC----CBCCEEESSSCSEECHHHHTSSTTTTSCEEEC
T ss_pred             cChhhC----CeeeEEeCCCCeEEeccccCCCCCCCCcEeeH
Confidence            599985    24789999999999999964  6999987654

>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.96  E-value=0.056  Score=37.58  Aligned_cols=36  Identities=28%  Similarity=0.487  Sum_probs=30.0

Q ss_pred             ccCCCCCCCCCCcceeecccccccCCCcCC--CCCCCCeeEE
Q 048158           31 GCGVHENCRKNEKNIFCLLCCLSICPHCLP--SHRSHPLLQV   70 (249)
Q Consensus        31 ~C~~H~~~~knE~N~FCldC~~s~C~~C~~--~H~~H~vlQI   70 (249)
                      .|..|..    ...+||.+|...+|..|..  .|++|+++.|
T Consensus        16 ~C~~H~e----~L~lfC~~d~~~iC~~C~~s~eH~~H~~~~l   53 (59)
T 2yrg_A           16 HCARHGE----KLLLFCQEDGKVICWLCERSQEHRGHHTFPT   53 (59)
T ss_dssp             BCTTTCC----BCCEEETTTCSEECHHHHTSTTTTTCCEEEC
T ss_pred             cChhhCc----eeeeecCCCCcEEecccCCCCcCCCCcEeeH
Confidence            5999963    4789999999999999964  6999987755

>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=90.28  E-value=0.075  Score=37.86  Aligned_cols=36  Identities=31%  Similarity=0.684  Sum_probs=29.2

Q ss_pred             ccCCCCCCCCCCcceeecccccccCCCcC-CCCCCCCeeEE
Q 048158           31 GCGVHENCRKNEKNIFCLLCCLSICPHCL-PSHRSHPLLQV   70 (249)
Q Consensus        31 ~C~~H~~~~knE~N~FCldC~~s~C~~C~-~~H~~H~vlQI   70 (249)
                      .|+.|.    ....+||.+|...+|..|. ..|++|+++-|
T Consensus        20 ~C~~H~----e~l~lfC~~d~~~iC~~C~~~~H~~H~~~~l   56 (72)
T 2csv_A           20 KCPVHG----KTMELFCQTDQTCICYLCMFQEHKNHSTVTV   56 (72)
T ss_dssp             BCTTTC----CBCCEEESSSCCEECHHHHHTTTSSSCEEEH
T ss_pred             cCcccC----CceEEEeCCCCeEEccccCCCCCCCCCEecH
Confidence            699994    3478999999999999996 46999987643

>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A

Probab=90.18  E-value=0.087  Score=38.25  Aligned_cols=37  Identities=32%  Similarity=0.635  Sum_probs=29.7

Q ss_pred             ccCCCCCCCCCCcceeecccccccCCCcC--CCCCCCCeeEE
Q 048158           31 GCGVHENCRKNEKNIFCLLCCLSICPHCL--PSHRSHPLLQV   70 (249)
Q Consensus        31 ~C~~H~~~~knE~N~FCldC~~s~C~~C~--~~H~~H~vlQI   70 (249)
                      .|+.|..   ...++||.+|...+|..|.  ..|++|+++-|
T Consensus        20 ~C~~H~~---e~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~l   58 (84)
T 2dja_A           20 TCLDHEN---EKVNMYCVSDDQLICALCKLVGRHRDHQVASL   58 (84)
T ss_dssp             CCSSCSS---SCCCEEETTTTEEECHHHHHTSTTTTCCBCCC
T ss_pred             cCcCcCC---ccccEEcCCCCceEcccCcCCCCCCCCCccCH
Confidence            6999953   2378999999999999995  46999987644

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=89.59  E-value=0.081  Score=39.34  Aligned_cols=37  Identities=30%  Similarity=0.556  Sum_probs=29.8

Q ss_pred             CccCCCCCCCCCCcceeecccccccCCCcC--CCCCCCCeeE
Q 048158           30 GGCGVHENCRKNEKNIFCLLCCLSICPHCL--PSHRSHPLLQ   69 (249)
Q Consensus        30 ~~C~~H~~~~knE~N~FCldC~~s~C~~C~--~~H~~H~vlQ   69 (249)
                      ..|+.|..   ...++||.+|...+|..|.  ..|++|+++-
T Consensus        60 ~~C~~H~~---e~l~~fC~~~~~~iC~~C~~~~~H~~H~~~~   98 (101)
T 2jun_A           60 LMCLEHED---EKVNMYCVTDDQLICALCKLVGRHRDHQVAA   98 (101)
T ss_dssp             CCCSSCSS---SCCCEEETTTTEEECHHHHHHTTTSSSCBCC
T ss_pred             CcCcCcCC---CcceEECCCCCCccchhcCCCCCcCCCCeec
Confidence            36999853   2378999999999999996  4799998754

>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.19  E-value=0.036  Score=38.39  Aligned_cols=35  Identities=29%  Similarity=0.617  Sum_probs=28.9

Q ss_pred             ccCCCCCCCCCCcceeecccccccCCCcCC--CCCCCCeeE
Q 048158           31 GCGVHENCRKNEKNIFCLLCCLSICPHCLP--SHRSHPLLQ   69 (249)
Q Consensus        31 ~C~~H~~~~knE~N~FCldC~~s~C~~C~~--~H~~H~vlQ   69 (249)
                      .|..|.    ....+||.+|...+|..|..  .|++|+++.
T Consensus        20 ~C~~H~----e~L~lfC~~d~~~iC~~C~~~~eH~~H~~~~   56 (57)
T 2egm_A           20 ICPKHQ----EALKLFCEVDEEAICVVCRESRSHKQHSVVP   56 (57)
T ss_dssp             BCTTTC----CBCCEEETTTTEEECHHHHHSHHHHSSCEEC
T ss_pred             cChhhC----ceeeEEcCCCCcEEecccCCCCCCCCCcEec
Confidence            599994    34789999999999999964  599998763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	249
d1frea_	39	Nuclear factor XNF7 {African clawed frog (Xenopus	96.07
d2d8ua1	51	Ubiquitin ligase trim63 {Human (Homo sapiens) [Tax	96.01
d2djaa1	71	Midline-2 {Human (Homo sapiens) [TaxId: 9606]}	95.57
d2dq5a1	47	Midline-1 {Human (Homo sapiens) [TaxId: 9606]}	95.48
d2csva1	59	Tripartite motif-containing protein 29 {Human (Hom	95.0
d2dida1	40	Tripartite motif-containing protein 39 {Human (Hom	94.8
d1lv3a_	65	Hypothetical zinc finger protein YacG {Escherichia	88.15

>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Nuclear factor XNF7
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=96.07  E-value=0.0021  Score=40.71  Aligned_cols=34  Identities=26%  Similarity=0.544  Sum_probs=28.5

Q ss_pred             ccCCCCCCCCCCcceeecccccccCCCcCC--CCCCCCee
Q 048158           31 GCGVHENCRKNEKNIFCLLCCLSICPHCLP--SHRSHPLL   68 (249)
Q Consensus        31 ~C~~H~~~~knE~N~FCldC~~s~C~~C~~--~H~~H~vl   68 (249)
                      .|+.|..    ..++||.+|...+|..|..  .|++|.++
T Consensus         2 ~C~~H~e----~l~lfC~~d~~~iC~~C~~~~~H~~H~v~   37 (39)
T d1frea_           2 KCSEHDE----RLKLYCKDDGTLSCVICRDSLKHASHNFL   37 (39)
T ss_dssp             CCCSSCS----SCCCCCCSSSSSSCCTTSSCSSCTTCCCC
T ss_pred             CCcccCc----ceeEEcccCCcEeeccCcCCCCcCCCcEe
Confidence            5899853    4789999999999999965  59999875

>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Ubiquitin ligase trim63
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.0012  Score=43.67  Aligned_cols=37  Identities=30%  Similarity=0.728  Sum_probs=29.3

Q ss_pred             ccCCCCCCCCCCcceeecccccccCCCcC--CCCCCCCeeEE
Q 048158           31 GCGVHENCRKNEKNIFCLLCCLSICPHCL--PSHRSHPLLQV   70 (249)
Q Consensus        31 ~C~~H~~~~knE~N~FCldC~~s~C~~C~--~~H~~H~vlQI   70 (249)
                      .|+.|.+   ...++||.+|...+|..|.  ..|++|++.-|
T Consensus         3 ~C~~H~~---e~l~~yC~~c~~~iC~~C~~~~~Hk~H~v~~l   41 (51)
T d2d8ua1           3 MCKEHED---EKINIYCLTCEVPTCSMCKVFGIHKACEVAPL   41 (51)
T ss_dssp             CCSSCTT---CCCCSEESSSCCCCCSHHHHSSSTTSSCEECT
T ss_pred             CCcccCc---CcceEEcCCCCceECccccCcCCcCcCcCcCH
Confidence            5888864   2468999999999999994  36999986543

>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.0017  Score=44.96  Aligned_cols=38  Identities=32%  Similarity=0.587  Sum_probs=30.1

Q ss_pred             ccCCCCCCCCCCcceeecccccccCCCcC--CCCCCCCeeEEE
Q 048158           31 GCGVHENCRKNEKNIFCLLCCLSICPHCL--PSHRSHPLLQVR   71 (249)
Q Consensus        31 ~C~~H~~~~knE~N~FCldC~~s~C~~C~--~~H~~H~vlQIR   71 (249)
                      .|+.|.+.   ..++||.+|...+|..|.  ..|.+|.+.-|.
T Consensus        13 ~C~~H~~e---~l~~fC~~C~~~iC~~C~~~~~Hk~H~~~~i~   52 (71)
T d2djaa1          13 TCLDHENE---KVNMYCVSDDQLICALCKLVGRHRDHQVASLN   52 (71)
T ss_dssp             CCSSCSSS---CCCEEETTTTEEECHHHHHTSTTTTCCBCCCC
T ss_pred             cCcccCCc---cceeEcCCCCceeccccccCCCCCCCcCcCHH
Confidence            59998642   368999999999999994  369999876553

>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.001  Score=43.56  Aligned_cols=35  Identities=31%  Similarity=0.630  Sum_probs=28.6

Q ss_pred             ccCCCCCCCCCCcceeecccccccCCCcC-C-CCCCCCee
Q 048158           31 GCGVHENCRKNEKNIFCLLCCLSICPHCL-P-SHRSHPLL   68 (249)
Q Consensus        31 ~C~~H~~~~knE~N~FCldC~~s~C~~C~-~-~H~~H~vl   68 (249)
                      .|+.|.+   .+-++||.+|...+|..|. . .|++|.+.
T Consensus         7 ~C~~H~~---e~l~~yC~~C~~~iC~~C~~~~~H~~H~~~   43 (47)
T d2dq5a1           7 MCLEHED---EKVNMYCVTDDQLICALCKLVGRHRDHQVA   43 (47)
T ss_dssp             BCSSCTT---SBEEEEETTTTEEEEHHHHHTSSTTSSCCC
T ss_pred             cchhhCC---CcceEEcCCCCccCCccCcCcCCcCCCeEe
Confidence            4898864   2468999999999999994 3 69999865

>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 29
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.00  E-value=0.002  Score=43.74  Aligned_cols=36  Identities=31%  Similarity=0.651  Sum_probs=29.9

Q ss_pred             ccCCCCCCCCCCcceeecccccccCCCcCC-CCCCCCeeEE
Q 048158           31 GCGVHENCRKNEKNIFCLLCCLSICPHCLP-SHRSHPLLQV   70 (249)
Q Consensus        31 ~C~~H~~~~knE~N~FCldC~~s~C~~C~~-~H~~H~vlQI   70 (249)
                      .|+.|..    ...+||.+|...+|..|+. .|++|.++.|
T Consensus        13 ~C~~H~e----~l~lyC~~c~~~iC~~C~~~~H~~H~~~~l   49 (59)
T d2csva1          13 KCPVHGK----TMELFCQTDQTCICYLCMFQEHKNHSTVTV   49 (59)
T ss_dssp             BCTTTCC----BCCEEESSSCCEECHHHHHTTTSSSCEEEH
T ss_pred             chhhhCC----ccceECCCCCceECcccCcccCCCCCeeCH
Confidence            6999942    4789999999999999965 5999987754

>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 39
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.80  E-value=0.0049  Score=39.10  Aligned_cols=35  Identities=26%  Similarity=0.596  Sum_probs=29.0

Q ss_pred             CccCCCCCCCCCCcceeecccccccCCCcCC--CCCCCCee
Q 048158           30 GGCGVHENCRKNEKNIFCLLCCLSICPHCLP--SHRSHPLL   68 (249)
Q Consensus        30 ~~C~~H~~~~knE~N~FCldC~~s~C~~C~~--~H~~H~vl   68 (249)
                      ..|+.|..    ..++||.+|...+|..|..  .|.+|+++
T Consensus         2 ~~C~~H~e----~l~lfC~~d~~~iC~~C~~~~~H~~H~v~   38 (40)
T d2dida1           2 SLCPQHHE----ALSLFCYEDQEAVCLICAISHTHRAHTVV   38 (40)
T ss_dssp             CBCTTTCC----BCCEEESSSCSEECHHHHTSSTTTTSCEE
T ss_pred             CcchhhCc----cceEEcccCCcEeeccCcCCCCcCCCcEe
Confidence            35888853    4789999999999999954  59999875

>d1lv3a_ g.39.1.9 (A:) Hypothetical zinc finger protein YacG {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Hypothetical zinc finger protein YacG
domain: Hypothetical zinc finger protein YacG
species: Escherichia coli [TaxId: 562]

Probab=88.15  E-value=0.11  Score=36.24  Aligned_cols=40  Identities=25%  Similarity=0.498  Sum_probs=27.1

Q ss_pred             CcccccccccC----CCc-eeecccccccceeeccCCcccccccccCCCccccccc
Q 048158          120 NMCFTCDRILQ----DSF-HFCSLSCKVDYMVYQGQDLSSILYRIDESDFAYSQFD  170 (249)
Q Consensus       120 ~~C~~C~R~L~----d~~-~FCSL~CKv~~v~~~~~dls~~l~~~~~~d~~~p~~e  170 (249)
                      -.|-+|++...    .+| -|||-.||+-       ||.    +|....+.+|-.+
T Consensus         7 v~CP~C~k~~~w~~~~~~rPFCS~RCk~I-------DLg----~W~~e~y~Ip~~~   51 (65)
T d1lv3a_           7 VNCPTCGKTVVWGEISPFRPFCSKRCQLI-------DLG----EWAAEEKRIPSSG   51 (65)
T ss_dssp             EECTTTCCEEECSSSSSCCSSSSHHHHHH-------HHS----CSSSSSCCCCSSS
T ss_pred             eeCCCCCCccccCCCCCcCCchhHhhhhc-------cHH----HHhcCCcccCCCC
Confidence            45999999763    344 5999999996       444    4545566666543