Citrus Sinensis ID: 048178
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 376 | 2.2.26 [Sep-21-2011] | |||||||
| Q8GXC7 | 427 | F-box/kelch-repeat protei | yes | no | 0.856 | 0.754 | 0.274 | 5e-16 | |
| Q9LPH0 | 408 | Putative F-box protein At | no | no | 0.707 | 0.651 | 0.275 | 8e-15 | |
| Q9SSQ2 | 423 | F-box protein At1g52490 O | no | no | 0.702 | 0.624 | 0.248 | 2e-14 | |
| Q9SFC7 | 417 | F-box protein At3g07870 O | no | no | 0.864 | 0.779 | 0.239 | 2e-13 | |
| Q9LU24 | 360 | Putative F-box protein At | no | no | 0.699 | 0.730 | 0.279 | 3e-13 | |
| Q9C629 | 475 | Putative F-box protein At | no | no | 0.702 | 0.555 | 0.265 | 4e-13 | |
| Q9FT50 | 390 | Putative F-box protein At | no | no | 0.595 | 0.574 | 0.285 | 5e-13 | |
| Q9SCL2 | 397 | F-box protein At3g49450 O | no | no | 0.710 | 0.672 | 0.270 | 7e-13 | |
| Q5BPS3 | 387 | F-box protein DOR OS=Arab | no | no | 0.712 | 0.692 | 0.290 | 7e-13 | |
| Q9FZF8 | 389 | Putative F-box protein At | no | no | 0.585 | 0.565 | 0.274 | 9e-13 |
| >sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 85.9 bits (211), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 111/405 (27%), Positives = 177/405 (43%), Gaps = 83/405 (20%)
Query: 10 PEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFISMHL----KND----VNTRLIV- 60
P +I+ EIL RLP KS+ R RCV K + L +P F +HL +N+ ++ +LIV
Sbjct: 37 PPEIITEILLRLPAKSIGRFRCVSKLFCTLSSDPGFAKIHLDLILRNESVRSLHRKLIVS 96
Query: 61 ---IYAKEDNT----------EEHSHP-KEYFCLFP--------DETLED----LSLQDL 94
+Y+ + N+ EH++P K+ +F D +D L L
Sbjct: 97 SHNLYSLDFNSIGDGIRDLAAVEHNYPLKDDPSIFSEMIRNYVGDHLYDDRRVMLKLNAK 156
Query: 95 STQE---PVLGSFKGLYCGIVFIEGLNNRITLWNIATRESVTLPK-YRAIIPQYTRVFGT 150
S + ++GS GL C I + L+N T +S LP+ +R +Y R
Sbjct: 157 SYRRNWVEIVGSSNGLVC----ISPGEGAVFLYNPTTGDSKRLPENFRPKSVEYERDNFQ 212
Query: 151 KIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRNLKSIDYTMRLSS- 209
GFG D T DYK+V ++ ++ D+S VY+L +SWR + +++Y S
Sbjct: 213 TYGFGFDGLTDDYKLVKLVATSEDILDAS-------VYSLKADSWRRICNLNYEHNDGSY 265
Query: 210 -ERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIYDQSLS 268
+F+GA +W+ E+ ++ V+++F + E+F+E+ P E SL+
Sbjct: 266 TSGVHFNGAIHWVFT-ESRHNQRVVVAFDIQTEEFREMPVPDEAEDCSHRFSNFVVGSLN 324
Query: 269 LLLLDTVDHCF----KIWVM----QKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESNSS 320
L V+ C+ IWVM + K+W + I LL+ N
Sbjct: 325 GRLC-VVNSCYDVHDDIWVMSEYGEAKSWSR---------IRINLLYRSMKPLCSTKNDE 374
Query: 321 QLLLYEPGTGELRDFE------LECC------WFSIYIYTESLIT 353
++LL G L +FE L C F Y ESLI+
Sbjct: 375 EVLLELDGDLVLYNFETNASSNLGICGVKLSDGFEANTYVESLIS 419
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LPH0|FB57_ARATH Putative F-box protein At1g53550 OS=Arabidopsis thaliana GN=At1g53550 PE=4 SV=2 | Back alignment and function description |
|---|
Score = 81.6 bits (200), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 132/290 (45%), Gaps = 24/290 (8%)
Query: 7 DDSPEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFISMH-LKNDVNTRLIVIY--A 63
D P D++I ILSRL ++ + R RCV K W ++I+ PN+ + +K+ RL+ ++ A
Sbjct: 33 DPIPVDLVINILSRLSLECIARCRCVSKLWSSIIRRPNYNQLFPVKSSATPRLLFVFKVA 92
Query: 64 KE---DNTEEHSHPKEYFCLFPDETLEDLSLQDLSTQE--PVLGSFKGLYCGIVFIEGLN 118
+E +++ +H +P + +L SLQ S+ + GL C IE
Sbjct: 93 RELFFNSSPQHFNPN-------NSSLVATSLQKTSSTRFSQLCRPVHGLICS-QHIEENY 144
Query: 119 NRITLWNIATRESVTLPKYRA-IIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRD 177
+ N T E + LPK R + T + + FG DP K +KV+ I L +
Sbjct: 145 LFALISNPTTGEYIALPKQRMEEMNSETIIEKVRYSFGYDPIDKQFKVLRITWLHRGSHE 204
Query: 178 SSCPFSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFH 237
S + ++T+ SWRN + L +G Y+ +L DN Y I+ F
Sbjct: 205 WSSEYQVLTL-GFGNISWRNTQCCVVHYLLEDSGICINGVLYYPARL--DNRKYTIVCFD 261
Query: 238 MAEEKFQ--EIQGPCTLESSLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQ 285
+ EKF I T+ ++L +L Y L + D F++WV++
Sbjct: 262 VMTEKFSFTSIDKDMTIMTNLSFSLIDYKGKLGACICDHT--LFELWVLE 309
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SSQ2|FB55_ARATH F-box protein At1g52490 OS=Arabidopsis thaliana GN=At1g52490 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 138/298 (46%), Gaps = 34/298 (11%)
Query: 10 PEDIMIEILSRLPVKSLIRLRCVCKSWYALI-KNPNFI----SMHLKNDVNTRLIVIYAK 64
P D+++EIL +LP KSL+R RCV K W +I K +F+ + L+ + + I+ +
Sbjct: 56 PLDLIVEILKKLPTKSLMRFRCVSKPWSFIISKRRDFVESIMARSLRQPPHKLPVFIFHQ 115
Query: 65 EDNTEEHSHPKEYFCL---FPDETLEDLSLQDLSTQEPVLGSFKGLYCG--IVFIEGLNN 119
D P +F + F T +S+ +F+ Y I + +
Sbjct: 116 CD-------PGTFFTVSSTFSQSTKPKVSIMPGRNH---YNAFRYQYVRGFICCSSSVYD 165
Query: 120 RITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSS 179
+T++N TR+ + LPK +++ R FG D +YKV L + ++ ++ +
Sbjct: 166 LVTIYNPTTRQCLPLPKIESMVLSPKR--HKHCYFGYDHVMNEYKV---LAMVNDSQELT 220
Query: 180 CPFSLVTVYNLSTNSWRNLK-SIDYTM-RLSSERTYFDGAFYWLLKLENDNDNY---VIL 234
F + T+ WR ++ +IDY + +S DG Y++ DN+NY ++
Sbjct: 221 QTFHVFTL-GRDCPQWRKIRGNIDYELISVSRAGVCIDGTIYYVAVRRKDNENYGELFMM 279
Query: 235 SFHMAEEKFQEIQGPCTLESSLDVTLGIYDQSLSLLLLDTVDHCFKIWVM---QKKNW 289
SF + E+F ++ P TL S G+++ L + + ++ +W+M +K+ W
Sbjct: 280 SFDVKSERFYHVRTPETLWSPKCTERGLFNHQGKLGCISSNENNISMWIMENAEKQEW 337
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SFC7|FB135_ARATH F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 95/396 (23%), Positives = 158/396 (39%), Gaps = 71/396 (17%)
Query: 10 PEDIMIEILSRLPVKSLIRLRCVCKSWYALIKN----------PNFISMHLKNDVNTRLI 59
PEDI+ +I SRLP+ S+ RL VC+SW +++ P + L D R
Sbjct: 29 PEDIIADIFSRLPISSIARLMFVCRSWRSVLTQHGRLSSSSSSPTKPCLLLHCDSPIRNG 88
Query: 60 VIYAKEDNTEEHSHPKEYFCLFPDETLEDLSLQDLSTQEPVLGSFKGLYCGIVFIEGLNN 119
+ + E+ K++ F E V+GS GL C + N+
Sbjct: 89 LHFLDLSEEEKRIKTKKFTLRFASSMPE----------FDVVGSCNGLLC--LSDSLYND 136
Query: 120 RITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSS 179
+ L+N T S+ LP+ VF GFG TK+YKV+ I+ +++
Sbjct: 137 SLYLYNPFTTNSLELPECSNKYHDQELVF----GFGFHEMTKEYKVLKIVYFRGSSSNNN 192
Query: 180 CPF----------SLVTVYNLSTN------SWRNLKSIDYTMRLSSERTYFDGAFYWLLK 223
+ S V + LS+ SWR+L Y S +G +++ +
Sbjct: 193 GIYRGRGRIQYKQSEVQILTLSSKTTDQSLSWRSLGKAPYKFVKRSSEALVNGRLHFVTR 252
Query: 224 LENDNDNYVILSFHMAEEKFQEIQGP-CTLESSLDVTLGIYDQSLSLLLLDTVDHCFKIW 282
+ +SF + +E+F+EI P C + + L L ++ IW
Sbjct: 253 PRRHVPDRKFVSFDLEDEEFKEIPKPDCGGLNRTNHRLVNLKGCLCAVVYGNYGK-LDIW 311
Query: 283 VMQ----KKNWIKQSSVGPFI--GIFQ----PLLFWK---------------KGAFFVES 317
VM+ K++W K+ S+G ++ G+ Q P+ WK G +E
Sbjct: 312 VMKTYGVKESWGKEYSIGTYLPKGLKQNLDRPMWIWKNAENGKVVRVLCLLENGEILLEY 371
Query: 318 NSSQLLLYEPGTGELRD--FELECCWFSIYIYTESL 351
S L+ Y+P G+ +D F WF ++ +L
Sbjct: 372 KSRVLVAYDPKLGKFKDLLFHGLPNWFHTVVHAGTL 407
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LU24|FB145_ARATH Putative F-box protein At3g16210 OS=Arabidopsis thaliana GN=At3g16210 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 132/301 (43%), Gaps = 38/301 (12%)
Query: 10 PEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFISMHLKNDVNTRLIVIYAKEDNT- 68
PE++ IEIL RL +K L R RCVCK+W LI +P F + ++ + + Y K
Sbjct: 6 PEELAIEILVRLSMKDLARFRCVCKTWRDLINDPGFTETY-RDMSPAKFVSFYDKNFYML 64
Query: 69 -EEHSHPKEYFCL-FPDETLEDLSLQDLSTQEPVLGSFKGLYC-GIVFIEGLNNRITLWN 125
E HP L FP D S+ D ST L+C G + + N+ + +WN
Sbjct: 65 DVEGKHPVITNKLDFP----LDQSMIDESTC--------VLHCDGTLCVTLKNHTLMVWN 112
Query: 126 IATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLV 185
+++ +P I Q + + +GFG DP DYKVV + D S
Sbjct: 113 PFSKQFKIVPN--PGIYQDSNI----LGFGYDPVHDDYKVVTFIDRLD--------VSTA 158
Query: 186 TVYNLSTNSWRNLKSIDYTMRLSSER--TYFDGAFYWLLKLENDNDNYVILSFHMAEEKF 243
V+ T SW I Y +R T+ D YW + + D + IL F+++ ++
Sbjct: 159 HVFEFRTGSWGESLRISYPDWHYRDRRGTFLDQYLYW-IAYRSSADRF-ILCFNLSTHEY 216
Query: 244 QEIQGPCTLESSLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQKK-NWIK--QSSVGPFIG 300
+++ P + LG+ Q L + + +I VM+K +W K S+ FI
Sbjct: 217 RKLPLPVYNQGVTSSWLGVTSQKLCITEYEMCKKEIRISVMEKTGSWSKIISLSMSSFIS 276
Query: 301 I 301
+
Sbjct: 277 V 277
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C629|FB35_ARATH Putative F-box protein At1g46840 OS=Arabidopsis thaliana GN=At1g46840 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 82/309 (26%), Positives = 149/309 (48%), Gaps = 45/309 (14%)
Query: 12 DIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFISMHLKNDVNT-RLIVIYAKEDNTEE 70
D++IEILSRL KS+ RCV K W +L+ + +F+ L++ ++ R+ + +
Sbjct: 34 DLVIEILSRLSAKSIAICRCVSKQWNSLLVSQDFVESFLRSSLSRPRIWFTFRFDGKWNF 93
Query: 71 HSHPKEYFCLFPDETLEDLSLQDLSTQEPVLGSFKGLYC-------GIVFI----EGLNN 119
S P+ P + +LS++ E +GS++ Y G +F+ +G+ +
Sbjct: 94 FSSPQ------PQKFGNNLSVE---ATEHHMGSYENWYMKSCQSVHGFIFMSYNSKGMTD 144
Query: 120 RI-TLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDS 178
R +WN TR+ +TLPK + F DP K +K VL +T+ ++++ +
Sbjct: 145 RTQVIWNPCTRQLITLPKLEPENLDFNSF------FAYDPTEKQFK-VLCMTVVNKQQTT 197
Query: 179 SCPFSLVTVYNLSTNS--WRNLK-SIDYTMRLSSERTY-FDGAFYWLLKLENDNDNYVIL 234
S + ++T L T WRN++ Y +R S R +G Y++ ++ +I+
Sbjct: 198 SYKYQVLT---LGTGPLLWRNIECPFMYRLRDKSNRGICINGVLYFIGWIK--CSTMIII 252
Query: 235 SFHMAEEKFQEIQGPCTLESSLDVTLGIYDQSLSLLLLDTVDHCFKIWVM---QKKNWIK 291
F ++ EKF I+ +E++ VTL Y L + L+ ++WV+ + NW K
Sbjct: 253 CFDVSSEKFSFIK----IENAFIVTLINYRGKLGVYLVVYGSPRGEVWVLDDTKNDNWSK 308
Query: 292 QSSVGPFIG 300
+ V P+ G
Sbjct: 309 HNFVCPYSG 317
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FT50|FB202_ARATH Putative F-box protein At3g52320 OS=Arabidopsis thaliana GN=At3g52320 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 115/249 (46%), Gaps = 25/249 (10%)
Query: 10 PEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFISMHLKNDVNTRLIVIYAKEDNTE 69
PE+++I+IL RLP KSL+R +CV K W +LI + F + K + L +N
Sbjct: 28 PEEMLIDILIRLPAKSLMRFKCVSKLWLSLITSRYFTNRFFKPSSPSCLFAYLVDRENQS 87
Query: 70 EHSHPKEYFCLFPDETLEDLSLQDLSTQEPVLGSF-----KGLYCGIVFIEGLNNRITLW 124
++ + D + +S+ D + P++G + +GL C + G R+ +
Sbjct: 88 KYLLLQSSSSSRHDHSDTSVSVIDQHSTIPIMGGYLVNAARGLLC---YRTG--RRVKVC 142
Query: 125 NIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSL 184
N +TR+ V LP I+ T V+ FG DP +YKV+ + W+ ++ + S
Sbjct: 143 NPSTRQIVELP----IMRSKTNVWN---WFGHDPFHDEYKVLSL--FWEVTKEQTVVRSE 193
Query: 185 VTVYNLSTN-SWRNLKSIDYTMR---LSSERTYFDGAFYWLLKLENDNDNYVILSFHMAE 240
V L SWRN KS R S DG Y+ D + V++SF ++
Sbjct: 194 HQVLVLGVGASWRNTKSHHTPHRPFHPYSRGMTIDGVLYY--SARTDANRCVLMSFDLSS 251
Query: 241 EKFQEIQGP 249
E+F I+ P
Sbjct: 252 EEFNLIELP 260
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SCL2|FB197_ARATH F-box protein At3g49450 OS=Arabidopsis thaliana GN=At3g49450 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 137/310 (44%), Gaps = 43/310 (13%)
Query: 10 PEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFISMHLK-NDVNTRLIVIYAKEDNT 68
P D+M+EILSR+P KS R RCV W +L+++P ++ LK + L++ + E
Sbjct: 33 PTDLMVEILSRVPAKSAARFRCVSNDWNSLLRSPYLTNLFLKRSSARPHLLITFQAEGKW 92
Query: 69 EEHSHPKEYFCLFPDETLEDLSLQDLSTQEPVLGSFK------GLYCGI---VFIEGLNN 119
S P EY L D+ +L + D P SF GL C V +
Sbjct: 93 SFFSSP-EY--LISDQN-SNLVVVDNHMDVPKDYSFGVCVPVCGLMCTSNEWVLSRKRDA 148
Query: 120 RITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGF-GLDPKTKDYKVVLILTLWDEKRDS 178
R+ + N +T + +LPK R+ G I + G +P K YK VL +T+ ++
Sbjct: 149 RMMICNPSTGQFKSLPKVRS-------CRGNVITYIGYNPIEKQYK-VLCMTIREKPFKF 200
Query: 179 SCPFSLVTVYNLSTNSWRNLK-SIDYTMRLSSERTYFDGAF-----YWLLKLENDNDNYV 232
V WR L+ S+D+ Y+ G+ + L +++++ Y+
Sbjct: 201 KAEEHQVLTLGTGKLKWRMLECSVDHY-------PYYHGSICINGVLFYLAMKSESKEYM 253
Query: 233 ILSFHMAEEKFQEIQGPCTLESSLDVT---LGIYDQSLSLLLLDTVDHCFKIWVMQKKN- 288
+SFHM +E F I L + ++ GI +S +D D F++W++ N
Sbjct: 254 TVSFHMKDENFMFIPNQDLLSTLINYKGRLGGIRHKSFG--FMDGGDVGFELWILDVVNQ 311
Query: 289 -WIKQSSVGP 297
WI+ V P
Sbjct: 312 EWIRSIHVLP 321
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5BPS3|DOR_ARATH F-box protein DOR OS=Arabidopsis thaliana GN=DOR PE=1 SV=2 | Back alignment and function description |
|---|
Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 92/317 (29%), Positives = 150/317 (47%), Gaps = 49/317 (15%)
Query: 3 LLGNDDS----PEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFISMHL-KNDVNTR 57
+LG D++ P D++IEI SR PVKS+ R RCV K W ++++ P F ++L K+ R
Sbjct: 15 ILGRDENFEPIPIDLVIEIFSRSPVKSIARCRCVSKLWASILRLPYFTELYLTKSCARPR 74
Query: 58 LIVIYAKEDNTEEHSHPKEYFCLFPDETLEDLSLQDLSTQEPVLGSFKGL--YCGIVFI- 114
L+ K S P+ + P+E+ L+ + P G F + G+VF+
Sbjct: 75 LLFACQKHRELFFFSTPQPH---NPNESSSPLA-ASFHMKIPFDGRFNIISPIGGLVFVR 130
Query: 115 --EGLNNRIT------LWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVV 166
+ L R T + N +T +S+TLPK + R++GT FG DP K +K V
Sbjct: 131 YEQILKGRKTPEFVSAICNPSTGQSLTLPKPKT----RKRIWGTS-HFGYDPIEKQFK-V 184
Query: 167 LILTLWDEKRDSSCPFSLVTVYNLSTNSWRNLK-SIDYTMRLSSERTYFDGAFYWLLKLE 225
L + + D +L T NL SWR ++ SI + S+ +G Y+ K +
Sbjct: 185 LSMNIGDGVYKEHYVLTLGT-ENL---SWRRIECSIPHVH--GSKGICINGVLYYRAKAD 238
Query: 226 NDNDNYVILSFHMAEEKFQEIQ--GPCTLESSLDVTLGIYDQSLSLLLLDTVDHC----F 279
+ +I+ F + EKF I+ P T TL Y+ L+ L+ + + F
Sbjct: 239 MFSGTLMIVCFDVRFEKFSYIKILKPTT-------TLISYNGKLASLVWEGPSYICGKRF 291
Query: 280 KIWVM---QKKNWIKQS 293
++WV+ +K W+K +
Sbjct: 292 EMWVLGDPEKHEWLKHT 308
|
Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Negative regulator of guard cell abscisic acid (ABA) signaling, especially during drought stress. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FZF8|FB44_ARATH Putative F-box protein At1g47790 OS=Arabidopsis thaliana GN=At1g47790 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 75.1 bits (183), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 111/248 (44%), Gaps = 28/248 (11%)
Query: 10 PEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFISMH-LKNDVNTRLIVIYAKEDNT 68
P D+ EIL RLPVKS++R RCV K W ++I +P FI + ++ L+ + + D
Sbjct: 26 PLDLASEILLRLPVKSVVRFRCVSKLWSSIITDPYFIKTYETQSSTRQSLLFCFKQSDKL 85
Query: 69 EEHSHPKEYF-----CLFPDETLEDLSLQDLSTQEPVLGSFKGLYCGIVFIEGLNNRITL 123
S PK ++ + + Q+ S P S GL C V + +
Sbjct: 86 FVFSIPKHHYDSNSSSQAAIDRFQVKLPQEFSYPSPT-ESVHGLICFHVLAT-----VIV 139
Query: 124 WNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFS 183
WN + R+ +TLPK R + T + G DP +KVV + R+ +C
Sbjct: 140 WNPSMRQFLTLPKPRKSWKELT------VFLGYDPIEGKHKVVCL------PRNRTCDEC 187
Query: 184 LVTVYNLSTNSWRNLKSIDYTMRLSSER--TYFDGAFYWLLKLENDNDNYVILSFHMAEE 241
V + SWR +K+ + R +++ G Y++ + + + I+SFH+ E
Sbjct: 188 QVLTLGSAQKSWRTVKT-KHKHRSTNDTWGRCIKGVVYYIAYVYHTR-VWCIMSFHVKSE 245
Query: 242 KFQEIQGP 249
KF I+ P
Sbjct: 246 KFDMIKLP 253
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 376 | ||||||
| 224119696 | 367 | predicted protein [Populus trichocarpa] | 0.890 | 0.912 | 0.372 | 3e-49 | |
| 224117590 | 441 | f-box family protein [Populus trichocarp | 0.912 | 0.777 | 0.340 | 2e-38 | |
| 224133722 | 443 | predicted protein [Populus trichocarpa] | 0.920 | 0.781 | 0.334 | 1e-37 | |
| 224119700 | 272 | predicted protein [Populus trichocarpa] | 0.675 | 0.933 | 0.386 | 5e-34 | |
| 296090345 | 423 | unnamed protein product [Vitis vinifera] | 0.880 | 0.782 | 0.318 | 1e-30 | |
| 148923046 | 392 | class S F-box protein [Nicotiana alata] | 0.909 | 0.872 | 0.306 | 2e-30 | |
| 449494779 | 383 | PREDICTED: F-box protein CPR30-like [Cuc | 0.922 | 0.906 | 0.287 | 2e-30 | |
| 316996533 | 394 | hypothetical protein [Pyrus pyrifolia] | 0.898 | 0.857 | 0.296 | 1e-29 | |
| 293337869 | 397 | SFBBbeta protein [Malus x domestica] | 0.912 | 0.863 | 0.305 | 2e-29 | |
| 293337857 | 397 | SFBBbeta protein [Pyrus communis] | 0.917 | 0.869 | 0.307 | 2e-29 |
| >gi|224119696|ref|XP_002318137.1| predicted protein [Populus trichocarpa] gi|222858810|gb|EEE96357.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 133/357 (37%), Positives = 195/357 (54%), Gaps = 22/357 (6%)
Query: 10 PEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFISMHLKNDVNTRLIVIYAKEDNTE 69
PED++IEILS LPVK+L++ +CVCKSWY +I + NFIS+HL N N K +
Sbjct: 10 PEDVIIEILSLLPVKTLLQFKCVCKSWYGIITSSNFISLHLNNHYNN------IKSGHLL 63
Query: 70 EHSHPKEYFCLFPDETLEDLSLQDLSTQEPVLGSFKGLYCGIVFIEGLNNRIT-LWNIAT 128
H + LF DE+L DLS Q L P+ G G GI +++ ++ + LWN AT
Sbjct: 64 AHFVCPQLLELFQDESLTDLSHQGLDP--PIRGRLCGPCNGIFYVDSEDSSGSGLWNPAT 121
Query: 129 RESVTLP---KYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWD-EKRDSSCPFSL 184
+E LP + ++ +P Y + GFG DP T DYKVV+I + E P SL
Sbjct: 122 KEFKLLPEKIRNKSSLPLY---YEDSYGFGFDPVTNDYKVVVIRESYTREYYLEKFPSSL 178
Query: 185 VTVYNLSTNSWRNLKSID--YTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEK 242
V VY L T+SWR S+D YT+ + T DG +YW + + VILSF+MA +
Sbjct: 179 VIVYTLRTDSWRCWGSLDQGYTLLGNYCYTNVDGVYYW--QAGHGVHMNVILSFNMATDA 236
Query: 243 FQEIQGPCTLESSLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIF 302
FQEIQ P + + L +Y S++ + V+ IWV+ + WI+Q P + +
Sbjct: 237 FQEIQEPDYDKPAYSTRLILYHDSIAFSTVHNVEKFLDIWVLNEGCWIRQFKSRPLLELR 296
Query: 303 QPLLFWKKGAFFVESNSSQLLLYEPGTGELRD--FELECCWFSIYIYTESLITLKGG 357
P+ WK G ++S++ QL+LY+ EL+D F+ + I +Y ESL+++K G
Sbjct: 297 NPVAHWKNGNVILDSDNDQLMLYDTNKQELKDLRFKGTGVCYEILVYRESLVSIKDG 353
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224117590|ref|XP_002331674.1| f-box family protein [Populus trichocarpa] gi|222874093|gb|EEF11224.1| f-box family protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 129/379 (34%), Positives = 186/379 (49%), Gaps = 36/379 (9%)
Query: 1 MVLLGNDDSPEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFISMHLKN-----DVN 55
M + PED++IEILSRLPVK+L++ +CVCKSWYA+I +PNFIS HL+N D +
Sbjct: 34 MATMTGHPLPEDVVIEILSRLPVKNLLQFKCVCKSWYAIITSPNFISKHLRNYYSKSDDS 93
Query: 56 TRLIVIYAKEDNTEEHSHPKEYFCLFPDETLEDLSLQDLSTQEPVL-GSFKGLYCGIVFI 114
L+V Y E S + L SL ++ P L G G++ ++
Sbjct: 94 DCLLVQYCVTQAGELESLELLL--DETPKVLSYASLGNMPFHSPFLCGPCDGIF--YMYR 149
Query: 115 EGLNNRITLWNIATRE------SVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLI 168
+ + R WN A E P + PQY GFGL P TKDY+VV++
Sbjct: 150 DYYDFR-AFWNPAVNEFKFLPPLPNPPSNFSYSPQY-----DAYGFGLHPVTKDYEVVVM 203
Query: 169 LTLWDEKRD--SSCPFSL-VTVYNLSTNSWRNLKSIDYTMRLSSERTY--FDGAFYWLLK 223
W EK++ C + L V VY+ ST SWR+ + L + + Y +G F+WL
Sbjct: 204 KDYWREKQEERGGCRYPLRVFVYSSSTGSWRHWGDLSRYYYLQNNKCYICMNGVFFWLGS 263
Query: 224 LENDND-NYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIYDQSLSLLLLDTVDHCFKIW 282
E D VI+SF MA E QEIQ P +S L Y SL+ +LD + +W
Sbjct: 264 YEIFGDPEKVIISFDMATETCQEIQLPDCGKSHNCQCLATYQDSLA--ILDVHEKFLHMW 321
Query: 283 VMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGELRDFEL----E 338
+ ++ W+K S+GP I P+ WK + S+S +L+L +P T E+ L
Sbjct: 322 TLNERCWVKNFSIGPLPEISYPIGHWKNSKLILVSDSGELILCDPSTQEISGLGLTRWVR 381
Query: 339 CCWFSIYIYTESLITLKGG 357
C ++ Y ESL+ + G
Sbjct: 382 C--VGVFAYKESLVLVNNG 398
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224133722|ref|XP_002327664.1| predicted protein [Populus trichocarpa] gi|222836749|gb|EEE75142.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 126/377 (33%), Positives = 184/377 (48%), Gaps = 31/377 (8%)
Query: 1 MVLLGNDDSPEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFISMHLKN--DVNTR- 57
M + D PED++IEILSRLPVK+L++ +CVCKSW+A+I +P IS HL+N D N
Sbjct: 37 METMTGDPLPEDVIIEILSRLPVKNLLQFKCVCKSWHAIITSPKLISKHLRNYYDKNDSD 96
Query: 58 -LIVIYAKEDNTEEHSHPKEYFCLFPDETLEDLSLQDLSTQEPVLGSFKGLYC-GIVFIE 115
L+ Y E S F L DET L + P + C GI ++
Sbjct: 97 CLLAQYRVTQAGEIAS-----FELLVDETPTRALSYGLLDRMPFQSPYIYGPCDGIFYLY 151
Query: 116 G-LNNRITLWNIATRESVTLPKYRAIIPQYTRVFG-----TKIGFGLDPKTKDYKVVLIL 169
G + LWN A E TLP IP F GF L P TKD +V+++
Sbjct: 152 GHFYDFHALWNPAINELKTLPP----IPNPPFSFSYSPLWNAYGFRLHPVTKDCEVIVMR 207
Query: 170 TLWDEKR---DSSCPFSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKL 224
W E+ + P S V VY LS++SWR + L + + Y +G FYWL
Sbjct: 208 EYWREEEGAWEDRYPLS-VFVYTLSSDSWRYWGDLSRYYHLRNNKCYICVEGVFYWLGSY 266
Query: 225 ENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIYDQSLSLLLLDTVDHCFKIWVM 284
D V+++F MA QEIQ P +S +L +Y+ S++LL++ + +W +
Sbjct: 267 GACGDPEVVINFDMATNVCQEIQLPDYDKSINSESLAVYNDSIALLVVQ--ESVLHVWTL 324
Query: 285 QKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGELRDFELECCWF-- 342
++ W K+ VGP +G+ P+ W+ + S+S +LLL +P T E+ E
Sbjct: 325 DERCWTKKFVVGPLLGVQYPVGHWQNNTIILISDSYELLLCDPRTQEMSGLGFEGGTIRC 384
Query: 343 -SIYIYTESLITLKGGE 358
I+ Y ESL+ +K G
Sbjct: 385 EGIFAYKESLVPVKNGH 401
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224119700|ref|XP_002318138.1| predicted protein [Populus trichocarpa] gi|222858811|gb|EEE96358.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 106/274 (38%), Positives = 149/274 (54%), Gaps = 20/274 (7%)
Query: 10 PEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFISMHLKNDVNTRLIVIYAKEDNTE 69
PED++IEILS LPVK+L++ +CVCKSWY +I + NFIS+HL N N K +
Sbjct: 10 PEDVIIEILSLLPVKTLLQFKCVCKSWYGIITSSNFISLHLNNHYNN------IKSGHLL 63
Query: 70 EHSHPKEYFCLFPDETLEDLSLQDLSTQEPVLGSFKGLYCGIVFIEGLNNRIT-LWNIAT 128
H + LF DE+L DLS Q L P+ G G GI +++ ++ + LWN AT
Sbjct: 64 AHFVCPQLLELFQDESLTDLSHQGL--DPPIRGRLCGPCNGIFYVDSEDSSGSGLWNPAT 121
Query: 129 RESVTLP---KYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWD-EKRDSSCPFSL 184
+E LP + ++ +P Y + GFG DP T DYKVV+I + E P SL
Sbjct: 122 KEFKLLPEKIRNKSSLPLY---YEDSYGFGFDPVTNDYKVVVIRESYTREYYLEKFPSSL 178
Query: 185 VTVYNLSTNSWRNLKSID--YTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEK 242
V VY L T+SWR S+D YT+ + T DG +YW + + VILSF+MA +
Sbjct: 179 VIVYTLRTDSWRCWGSLDQGYTLLGNYCYTNVDGVYYW--QAGHGVHMNVILSFNMATDA 236
Query: 243 FQEIQGPCTLESSLDVTLGIYDQSLSLLLLDTVD 276
FQEIQ P + + L +Y S++ + V+
Sbjct: 237 FQEIQEPDYDKPASSTRLILYHDSIAFSTVHNVE 270
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296090345|emb|CBI40164.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 116/364 (31%), Positives = 177/364 (48%), Gaps = 33/364 (9%)
Query: 14 MIEILSRLPVKSLIRLRCVCKSWYALIKNPNFISMHLKN-DVNTRLIVIYAKEDNTEEHS 72
+I+I RLPVKS++R RCVCKSW L +P+FISMHL+ N+ +++ ++E+
Sbjct: 25 LIDIHLRLPVKSIVRFRCVCKSWCTLFDDPDFISMHLRQASANSNGRLLFKHLSSSEQEI 84
Query: 73 HPKEYFCLFPDETLEDLSLQDLSTQEPVLGSFKGLYCGIVFIEG------LNNRITLWNI 126
+ F + ++ + + ++GS GL C E L+ + LWN
Sbjct: 85 YSLRSNIAFAEVRRLEVPVPSKTDYYQIVGSSNGLIC---LTESNFKGSYLSLNLFLWNP 141
Query: 127 ATRESVTLPKYRAIIPQYTR-VFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLV 185
A RE TLPKY I +T + +GF P DYKVV I+ K S
Sbjct: 142 AIREFQTLPKYH--INNFTSPLMVVGLGFAFHPVINDYKVVRIVYFMRNKT------SEA 193
Query: 186 TVYNLSTNSWRNLKS-IDYTMRLSSERTYFDGAFYWLL--KLENDNDNYVILSFHMAEEK 242
VY+L T SWR + + I + + RT+ +GA +WL K E DN + +ILSF MA++
Sbjct: 194 DVYSLRTGSWRKVDANICCYIHSNVSRTFINGALHWLAGKKNEMDNTDNLILSFDMAKDV 253
Query: 243 FQEIQGP-CTLESSLDVTLGIYDQSLSLLLLDTV---DHCFKIWVMQK----KNWIKQSS 294
F+EI P + + L Y SLS+L D ++C +WVM++ K+W K +
Sbjct: 254 FKEIMLPDFGYDELIRKCLADYKGSLSVLFYDAYHSNENC-DVWVMEEYGVAKSWTKHFT 312
Query: 295 VGPFIGIFQPLLFWKKG-AFFVESNSSQLLLYEPGTGELRDFELECCWFSIYIYTESLIT 353
+ I I P F+ G A + S + + P RD + + Y ESL++
Sbjct: 313 IRHEIEIIIPFEFFDNGEAILQKKKSGGFISWNPDGIRFRDLGVSGP-ARLVEYMESLVS 371
Query: 354 LKGG 357
+GG
Sbjct: 372 PRGG 375
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|148923046|gb|ABR18787.1| class S F-box protein [Nicotiana alata] | Back alignment and taxonomy information |
|---|
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 116/378 (30%), Positives = 189/378 (50%), Gaps = 36/378 (9%)
Query: 10 PEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFISMHLKNDVNTRLIVIYAK--EDN 67
P D+MI+I+ RLP KS+IR++CV K+WY +I +P+FIS+H D ++ +++ + E +
Sbjct: 12 PYDVMIDIMKRLPAKSVIRIKCVSKTWYYMINSPDFISIHYNYDYPSKHFIVFKRYLEID 71
Query: 68 TEE--HSHPKEYFCLF-PDETLEDLSLQDLSTQEPVLGSFKGLYCGIVFIEGLNNRITLW 124
EE + + K + D++L+ ++ + + + G GIV I G I L+
Sbjct: 72 AEESIYYNGKNMLSVHCNDDSLKSVAPNTEYLDDYIGVNIAGPCNGIVCI-GSYRGIVLY 130
Query: 125 NIATRE-------SVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILT-----LW 172
N RE + P Y + + +G G DP T DYKVV IL +
Sbjct: 131 NPTLREFWELPPSILPPPPYLSSDKKLNYWMDMTMGIGFDPNTNDYKVVRILRPAHEYTF 190
Query: 173 DEKRDSSCPFSLVTVYNLSTNSWRNLKSIDYTM-RLSSERTYFDGAFYWLLKLENDNDNY 231
++ + S V VYNLSTNSWR +K ++ + L +F+GAF+W + +D+Y
Sbjct: 191 EDFDNHIRDVSKVEVYNLSTNSWRRIKDLECLVDTLHCSHVFFNGAFHW--RRYTKSDDY 248
Query: 232 VILSFHMAEEKFQEIQGPCTLESSLDVTLGIYDQSLSLLLLDT-------VDHCFKIWVM 284
I+SF+ + E FQ I P L +L + +SL+L+ V IWVM
Sbjct: 249 FIVSFNFSIESFQMIPSPEGLTDEGRKSLFVLSESLALICFTENYPREMLVHQSIDIWVM 308
Query: 285 QK----KNWIKQSSVGPFIGIFQPLLFWKKGA-FFVESNSSQLLLYEPGTGELRDFELEC 339
+K ++WIK+ +VGP + I PL WK +ESN+ +L+ + +D ++
Sbjct: 309 KKYGVRESWIKEFTVGPML-IKIPLSVWKNDTELMIESNNGKLMSCNLLSQATKDLDMSG 367
Query: 340 C--WFSIYIYTESLITLK 355
+ ESLI++K
Sbjct: 368 VPDTLEAIVCKESLISIK 385
|
Source: Nicotiana alata Species: Nicotiana alata Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449494779|ref|XP_004159645.1| PREDICTED: F-box protein CPR30-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 108/376 (28%), Positives = 179/376 (47%), Gaps = 29/376 (7%)
Query: 10 PEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFISMHLKNDVNTRLIVIYAKEDNTE 69
P+ ++I+ILSRLP +SL+R +CV KSWYAL +P F + H + + I++ K T+
Sbjct: 8 PDGVIIDILSRLPPESLLRFKCVRKSWYALFNDPKFKAKHFSTSLQHKHILL--KRLVTK 65
Query: 70 EHSHPKEYFCLF--PDETLEDLSLQDLS---TQEPVLGSFKGLYCGIVFIEGLNNRITLW 124
+ + F LF P LSL D+ ++ +G G++ + L I L
Sbjct: 66 HSGNKENIFSLFKLPLSIHPSLSLSDIDLPFHEDFRFFEIRGHSHGLLCLTDLRKDIFLC 125
Query: 125 NIATRESVTLPKY------RAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDS 178
N +TRE LP + P +GFG D K++D+KVV ++ +
Sbjct: 126 NPSTREFHKLPPSILLLTEPPVEPDDYDSSTNAVGFGYDSKSRDFKVVRVVDFVEGPGYF 185
Query: 179 SCPFSLVTVYNLSTNSWRNLKS--IDYTMRLSSERTYFDGAFYWLLKLENDNDNY-VILS 235
P V VY+LS + WR ++S + + +G +YW N N +I +
Sbjct: 186 YPP--RVEVYDLSKDRWREIESPVCGHVFWAPCFEMFHEGTYYWWAMTGNTEGNTEIIQT 243
Query: 236 FHMAEEKFQEIQGPCTLESSLD--VTLGIYDQSLSLLLLDTV--DHCFKIWVMQKK---- 287
F M+EE F I P + E + D +LG+ D + L + + F +W M K
Sbjct: 244 FDMSEEVFGRIPVPESFEGTGDRYRSLGVLDGCIVLFHYPSRGDERSFDMWEMAKDEWGG 303
Query: 288 -NWIKQSSVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGELRDFEL--ECCWFSI 344
+W K ++GP GI +PLLF +E N Q+++Y +GE+++ + + F
Sbjct: 304 VSWSKVLTIGPVCGIEKPLLFVSCEELLMEGNGGQVIVYNIKSGEVKEVPIKGDPAKFQG 363
Query: 345 YIYTESLITLKGGESV 360
+ +SL+++KGG +
Sbjct: 364 TAFVKSLVSVKGGNKI 379
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|316996533|dbj|BAJ52224.1| hypothetical protein [Pyrus pyrifolia] | Back alignment and taxonomy information |
|---|
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 122/411 (29%), Positives = 190/411 (46%), Gaps = 73/411 (17%)
Query: 1 MVLLGNDDSPEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFISMHLKNDVNTRL-- 58
M + +++PED ++EI+SRLP KSL+R +C+ KSW LI + +F++ HL N V+ +L
Sbjct: 1 MPHVCENEAPEDEVVEIMSRLPPKSLMRFKCIRKSWCTLINSSSFVAKHLNNSVDNKLSS 60
Query: 59 ----------IVIYAKED--------------NTEEHSHPKEYFCLFPDETLEDLSLQ-D 93
+ ++ + +++EH+H + +EDL++
Sbjct: 61 STCILLNRSQMPVFPDKSWKYEILWSIINLSIDSDEHNHHYD---------VEDLNIPFP 111
Query: 94 LSTQEPVLGSFKGLYCGIVFIEGLNNRITLWNIATRESVTLPKYRAIIP------QYTRV 147
L PV G GIV + I L N T E LP I+P Q+ +
Sbjct: 112 LEDHHPV--QIHGYCNGIVCVMTGKTVIILCNPGTGEFKQLPNSCLIVPIPKEKFQFEAI 169
Query: 148 FGTKIGFGLDPKTKDYKVVLILTLW---DEKRD--SSCPF-SLVTVYNLSTNSWRNLKSI 201
FG +GFG D K K+YKVV I+ W D++R S P VY ++ NSW+ +K I
Sbjct: 170 FGG-LGFGYDWKAKEYKVVQIIENWEYLDDERTYYHSIPLPHTAEVYTMAANSWKEIK-I 227
Query: 202 DYTMRLSSE--RTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDV- 258
D + + Y G YW +D + Y ILSF + +E F IQ P ESS
Sbjct: 228 DISTKTYPRFCSVYLKGCCYW---FASDGEEY-ILSFDLGDETFHRIQLPSRRESSFKFY 283
Query: 259 TLGIYDQSLSLLL--LDTVDHC--FKIWVMQ-----KKNWIKQSSVGPFIGIFQPLLFWK 309
L +Y++S++ D + F+IWVM K W ++GPF GI PL WK
Sbjct: 284 DLFLYNESITSYCSHYDPSEDSKLFEIWVMDDYDGVKSLWTNLLTIGPFKGIDYPLTLWK 343
Query: 310 KGAFFVESNSSQLLLYEPGTGELRDFELECCW-----FSIYIYTESLITLK 355
+ ++ + + Y TG L+ + F IY +S++++K
Sbjct: 344 CDELLMLASDGRAISYNSSTGNLKYLHIPPIINGVNDFEALIYVKSIVSIK 394
|
Source: Pyrus pyrifolia Species: Pyrus pyrifolia Genus: Pyrus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|293337869|gb|ADE43178.1| SFBBbeta protein [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 125/409 (30%), Positives = 191/409 (46%), Gaps = 66/409 (16%)
Query: 1 MVLLGNDDSPEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFISMHLKNDVNTRL-- 58
M + ++PED + EILSRLP KSL+RL+C+ KSW +I NP+F++ HL N V+ +
Sbjct: 1 MTQVRESETPEDRVAEILSRLPPKSLMRLKCIRKSWGTIINNPSFMAKHLSNSVDNKFSS 60
Query: 59 ----------IVIYAKEDNTEEH-------SHPKEYFCLFPDETLEDLSLQ---DLSTQE 98
+ ++ EH SH + L+ D +EDL++Q +
Sbjct: 61 STCILLRRSQMPVFPDRSWKREHFWSMINLSHDSDEHNLYYD--VEDLNIQFPLEDHDHV 118
Query: 99 PVLGSFKGLYCGIVFIEGLNNRITLWNIATRESVTLPKYRAIIP-------QYTRVFGTK 151
+ G G+ C IV G N L+N ATRE LP ++P + F
Sbjct: 119 SIHGYCNGIVCLIV---GKN--AVLYNPATRELKQLPDSCLLLPSPPEGKFELESTF-QG 172
Query: 152 IGFGLDPKTKDYKVVLIL---TLWDEKRDSSCPFSL---VTVYNLSTNSWRNLK-SIDYT 204
+GFG D K K+YKVV I+ D++R S +L VY +TNSWR ++ I
Sbjct: 173 MGFGYDSKAKEYKVVKIIENCEYSDDQRTFSHRIALPHTAEVYVTTTNSWRVIEIEISSD 232
Query: 205 MRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESS-LDVTLGIY 263
S Y G YW +D++ Y ILSF + +E F IQ P ES L +Y
Sbjct: 233 TYNCSCSVYLKGFCYW---FASDDEEY-ILSFDLGDEIFHRIQLPYRKESGFLFYDFFLY 288
Query: 264 DQSLSLLL--LDTVDHC-----FKIWVMQ-----KKNWIKQSSVGPFIGIFQPLLFWKKG 311
++S++ D D+ +IW+M K +W K ++GPF G L FWK
Sbjct: 289 NESIASFCSHYDKSDNSGILEILEIWIMDDCDGVKSSWTKLQTLGPFKGNENLLTFWKSD 348
Query: 312 AFFVESNSSQLLLYEPGTGELRDFEL-----ECCWFSIYIYTESLITLK 355
F + ++ +++ Y TG L+ + F IY ES+++++
Sbjct: 349 EFLMVTSDKRVISYNSSTGNLKYIHIPPIINTVADFEALIYVESIVSVQ 397
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|293337857|gb|ADE43172.1| SFBBbeta protein [Pyrus communis] | Back alignment and taxonomy information |
|---|
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 125/407 (30%), Positives = 194/407 (47%), Gaps = 62/407 (15%)
Query: 1 MVLLGNDDSPEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFISMHLKNDVNTR--- 57
M + ++PED + EILSRLP KSL+R +C+ KSW +I NP+F++ HL N V+ +
Sbjct: 1 MTQVRESETPEDRVAEILSRLPPKSLMRFKCIRKSWGTIINNPSFMAKHLSNSVDNKFSS 60
Query: 58 ---LIVIYAKEDNTEEHSHPKEYF----CLFPDETLEDL--SLQDLSTQEP--------V 100
+++ ++ + S +E+F L PD +L ++DL+ Q P +
Sbjct: 61 STCILLRRSQMPVFPDRSWKREHFWSMINLSPDSDEHNLYYDVEDLNIQFPLEDHDHVSI 120
Query: 101 LGSFKGLYCGIVFIEGLNNRITLWNIATRESVTLPKYRAIIP-------QYTRVFGTKIG 153
G G+ C IV G N L+N ATRE LP ++P + F +G
Sbjct: 121 HGYCNGIVCLIV---GKN--AVLYNPATRELKQLPDSCLLLPSPPEGKFELESTF-QGMG 174
Query: 154 FGLDPKTKDYKVVLIL---TLWDEKRDSSCPFSL---VTVYNLSTNSWRNLK-SIDYTMR 206
FG D K K+YKVV I+ D++R S +L VY +TNSWR ++ I
Sbjct: 175 FGYDSKAKEYKVVKIIENCEYSDDQRTFSHRIALPHTAEVYVTTTNSWRVIEIEISSDTY 234
Query: 207 LSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESS-LDVTLGIYDQ 265
S Y G YW +D++ Y ILSF + +E F IQ P ES L +Y++
Sbjct: 235 NCSCSVYLKGFCYW---FASDDEEY-ILSFDLGDEIFHRIQLPYRKESGFLFYDFFLYNE 290
Query: 266 SLSLLL--LDTVDHC-----FKIWVMQ-----KKNWIKQSSVGPFIGIFQPLLFWKKGAF 313
S++ D D+ +IW+M K +W K ++GPF G L FWK F
Sbjct: 291 SIASFCSHYDKSDNSGILEILEIWIMDDCDGVKSSWTKLQTLGPFKGNENLLTFWKSDEF 350
Query: 314 FVESNSSQLLLYEPGTGELRDFEL-----ECCWFSIYIYTESLITLK 355
+ ++ +++ Y TG L+ + F IY ES+++++
Sbjct: 351 LMVTSDKRVISYNSSTGNLKYIHIPPIINTVADFEALIYVESIVSVQ 397
|
Source: Pyrus communis Species: Pyrus communis Genus: Pyrus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 376 | ||||||
| TAIR|locus:2203708 | 408 | AT1G53550 "AT1G53550" [Arabido | 0.734 | 0.676 | 0.274 | 2.5e-17 | |
| TAIR|locus:2825822 | 475 | AT1G46840 "AT1G46840" [Arabido | 0.731 | 0.578 | 0.270 | 5e-16 | |
| TAIR|locus:2082410 | 427 | AT3G06240 "AT3G06240" [Arabido | 0.635 | 0.559 | 0.262 | 1.3e-15 | |
| TAIR|locus:2088985 | 386 | AT3G17280 "AT3G17280" [Arabido | 0.715 | 0.696 | 0.279 | 6.5e-15 | |
| TAIR|locus:2061325 | 387 | DOR "AT2G31470" [Arabidopsis t | 0.718 | 0.697 | 0.292 | 6.6e-15 | |
| TAIR|locus:2114673 | 397 | AT3G49450 "AT3G49450" [Arabido | 0.726 | 0.687 | 0.276 | 7.3e-15 | |
| TAIR|locus:2075790 | 370 | AT3G10430 "AT3G10430" [Arabido | 0.638 | 0.648 | 0.276 | 8.3e-15 | |
| TAIR|locus:2202425 | 389 | AT1G47790 "AT1G47790" [Arabido | 0.704 | 0.681 | 0.284 | 1.5e-14 | |
| TAIR|locus:2196964 | 399 | AT1G30790 "AT1G30790" [Arabido | 0.744 | 0.701 | 0.261 | 6.4e-14 | |
| TAIR|locus:2100524 | 390 | AT3G52320 "AT3G52320" [Arabido | 0.595 | 0.574 | 0.285 | 1.7e-13 |
| TAIR|locus:2203708 AT1G53550 "AT1G53550" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 233 (87.1 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 81/295 (27%), Positives = 131/295 (44%)
Query: 7 DDSPEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFISMH-LKNDVNTRLIVIYAKE 65
D P D++I ILSRL ++ + R RCV K W ++I+ PN+ + +K+ RL+ ++
Sbjct: 33 DPIPVDLVINILSRLSLECIARCRCVSKLWSSIIRRPNYNQLFPVKSSATPRLLFVFKVA 92
Query: 66 DNTEEHSHPKEYFCLFPDET-LEDLSLQDLSTQE--PVLGSFKGLYCGIVFIEGLNNRIT 122
+S P+ + P+ + L SLQ S+ + GL C IE
Sbjct: 93 RELFFNSSPQHFN---PNNSSLVATSLQKTSSTRFSQLCRPVHGLICS-QHIEENYLFAL 148
Query: 123 LWNIATRESVTLPKYRAI-IPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCP 181
+ N T E + LPK R + T + + FG DP K +KV+ I L + S
Sbjct: 149 ISNPTTGEYIALPKQRMEEMNSETIIEKVRYSFGYDPIDKQFKVLRITWLHRGSHEWSSE 208
Query: 182 FSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEE 241
+ ++T+ SWRN + L +G Y+ +L DN Y I+ F + E
Sbjct: 209 YQVLTL-GFGNISWRNTQCCVVHYLLEDSGICINGVLYYPARL--DNRKYTIVCFDVMTE 265
Query: 242 KFQ--EIQGPCTLESSLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQ---KKNWIK 291
KF I T+ ++L +L Y L + D F++WV++ + W K
Sbjct: 266 KFSFTSIDKDMTIMTNLSFSLIDYKGKLGACICDHT--LFELWVLENAEEHKWSK 318
|
|
| TAIR|locus:2825822 AT1G46840 "AT1G46840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 224 (83.9 bits), Expect = 5.0e-16, P = 5.0e-16
Identities = 86/318 (27%), Positives = 155/318 (48%)
Query: 12 DIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFISMHLKNDVNT-RLIVIYAKEDNTEE 70
D++IEILSRL KS+ RCV K W +L+ + +F+ L++ ++ R+ + +
Sbjct: 34 DLVIEILSRLSAKSIAICRCVSKQWNSLLVSQDFVESFLRSSLSRPRIWFTFRFDGKWNF 93
Query: 71 HSHPKEYFCLFPDETLEDLSLQDLSTQEPVLGSFKGLY---C----GIVFI----EGLNN 119
S P+ P + +LS++ E +GS++ Y C G +F+ +G+ +
Sbjct: 94 FSSPQ------PQKFGNNLSVE---ATEHHMGSYENWYMKSCQSVHGFIFMSYNSKGMTD 144
Query: 120 RI-TLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDS 178
R +WN TR+ +TLPK P+ F + F DP K +KV L +T+ ++++ +
Sbjct: 145 RTQVIWNPCTRQLITLPKLE---PENLD-FNSF--FAYDPTEKQFKV-LCMTVVNKQQTT 197
Query: 179 SCPFSLVTVYNLSTNSWRNLKS-IDYTMRLSSERTY-FDGAFYWLLKLENDNDNYVILSF 236
S + ++T+ WRN++ Y +R S R +G Y++ ++ +I+ F
Sbjct: 198 SYKYQVLTL-GTGPLLWRNIECPFMYRLRDKSNRGICINGVLYFIGWIKCST--MIIICF 254
Query: 237 HMAEEKFQEIQGPCTLESSLDVTLGIYDQSLSLLLLDTVDHCFKIWVM---QKKNWIKQS 293
++ EKF I+ +E++ VTL Y L + L+ ++WV+ + NW K +
Sbjct: 255 DVSSEKFSFIK----IENAFIVTLINYRGKLGVYLVVYGSPRGEVWVLDDTKNDNWSKHN 310
Query: 294 SVGPFIGIFQPLLFWKKG 311
V P+ G Q W G
Sbjct: 311 FVCPYSG--QENSTWATG 326
|
|
| TAIR|locus:2082410 AT3G06240 "AT3G06240" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 167 (63.8 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 71/270 (26%), Positives = 119/270 (44%)
Query: 100 VLGSFKGLYCGIVFIEGLNNRITLWNIATRESVTLPK-YRAIIPQYTRVFGTKIGFGLDP 158
++GS GL C I + L+N T +S LP+ +R +Y R GFG D
Sbjct: 165 IVGSSNGLVC----ISPGEGAVFLYNPTTGDSKRLPENFRPKSVEYERDNFQTYGFGFDG 220
Query: 159 KTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRNLKSIDYTMRLSSERT--YFDG 216
T DYK+V ++ ++ D+S VY+L +SWR + +++Y S + +F+G
Sbjct: 221 LTDDYKLVKLVATSEDILDAS-------VYSLKADSWRRICNLNYEHNDGSYTSGVHFNG 273
Query: 217 AFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIYDQSLSLLLLDTVD 276
A +W+ E+ ++ V+++F + E+F+E+ P E SL+ L V+
Sbjct: 274 AIHWVFT-ESRHNQRVVVAFDIQTEEFREMPVPDEAEDCSHRFSNFVVGSLNGRLC-VVN 331
Query: 277 HCFK----IWVMQK----KNWIKQSSVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPG 328
C+ IWVM + K+W + + +PL K + L+LY
Sbjct: 332 SCYDVHDDIWVMSEYGEAKSW-SRIRINLLYRSMKPLCSTKNDEEVLLELDGDLVLYNFE 390
Query: 329 TGELRDFELECC-----WFSIYIYTESLIT 353
T + + C F Y ESLI+
Sbjct: 391 TNASSNLGI-CGVKLSDGFEANTYVESLIS 419
|
|
| TAIR|locus:2088985 AT3G17280 "AT3G17280" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 212 (79.7 bits), Expect = 6.5e-15, P = 6.5e-15
Identities = 84/301 (27%), Positives = 131/301 (43%)
Query: 8 DSPEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFISMHLKNDVNTRLIVIYAKEDN 67
D P D++ EILSRLP KS+ +L+ CK WYAL K+P F+ L + ++ + ++
Sbjct: 6 DLPYDLLPEILSRLPTKSIPKLKTTCKKWYALFKDPKFVEKKLGKAARETVFLMNHEVNS 65
Query: 68 --TEEHSHPKEYFCLFPDETLEDLSLQDLSTQEPVLGSFKGLYC-GIVFIEGLNNRITLW 124
+ H PK Y + D T L++ + S E F+ +C G+ +N R+ +W
Sbjct: 66 ISVDIHGIPKGY-SVSMDFT-GTLTIPEGSDLE----IFRIHHCNGLFLCATMNCRLVVW 119
Query: 125 NIATRESVTLPKYRAIIPQYTRVFGTKI---GFGLDPKTKDYKVVLILTLWDEKRDSSCP 181
N T + +T IIP+ TR I G G D K+ IL D+ + P
Sbjct: 120 NPCTGQ-ITW-----IIPR-TRYDSDDIYALGCG-DDKSSSLHSYKILRCCDDNQKK--P 169
Query: 182 FSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYFDGAFYWLL--KLENDNDNYVILSFHMA 239
S +Y+ S++SWR L + + + YW K E + IL F A
Sbjct: 170 VS--EIYDFSSSSWRVLDGVTANCFIECNGVALKESAYWYASDKRETPKGKF-ILRFDFA 226
Query: 240 EEKFQEIQGPCTLESSLD---VTLGIYDQSLSLLLLDTVDHCFKIWVMQK-KNWIKQSSV 295
E+F + P + D V + + + L LL DH K K W+ + +
Sbjct: 227 TERFARLCLPLNFQRDRDNKSVVVSVVGEE-KLALLQQFDHRVHGLKYSKIKIWVTDTKI 285
Query: 296 G 296
G
Sbjct: 286 G 286
|
|
| TAIR|locus:2061325 DOR "AT2G31470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 212 (79.7 bits), Expect = 6.6e-15, P = 6.6e-15
Identities = 92/315 (29%), Positives = 152/315 (48%)
Query: 3 LLGNDDS----PEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFISMHL-KNDVNTR 57
+LG D++ P D++IEI SR PVKS+ R RCV K W ++++ P F ++L K+ R
Sbjct: 15 ILGRDENFEPIPIDLVIEIFSRSPVKSIARCRCVSKLWASILRLPYFTELYLTKSCARPR 74
Query: 58 LIVIYAKEDNTEEHSHPKEYFCLFPDETLEDLSLQDLSTQEPVLGSFKGL--YCGIVFI- 114
L+ K S P+ + P+E+ L+ + P G F + G+VF+
Sbjct: 75 LLFACQKHRELFFFSTPQPHN---PNESSSPLAAS-FHMKIPFDGRFNIISPIGGLVFVR 130
Query: 115 --EGLNNRIT------LWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVV 166
+ L R T + N +T +S+TLPK + R++GT FG DP K +KV
Sbjct: 131 YEQILKGRKTPEFVSAICNPSTGQSLTLPKPKT----RKRIWGTS-HFGYDPIEKQFKV- 184
Query: 167 LILTLWDEKRDSSCPFSLVTVYNLSTNSWRNLK-SIDYTMRLSSERTYFDGAFYWLLKLE 225
L + + D +L T NLS WR ++ SI + S+ +G Y+ K +
Sbjct: 185 LSMNIGDGVYKEHYVLTLGTE-NLS---WRRIECSIPHVH--GSKGICINGVLYYRAKAD 238
Query: 226 NDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIYDQSLSLLLLDTVDH-C---FKI 281
+ +I+ F + EKF I+ L+ + TL Y+ L+ L+ + + C F++
Sbjct: 239 MFSGTLMIVCFDVRFEKFSYIK---ILKPT--TTLISYNGKLASLVWEGPSYICGKRFEM 293
Query: 282 WVM---QKKNWIKQS 293
WV+ +K W+K +
Sbjct: 294 WVLGDPEKHEWLKHT 308
|
|
| TAIR|locus:2114673 AT3G49450 "AT3G49450" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 212 (79.7 bits), Expect = 7.3e-15, P = 7.3e-15
Identities = 84/304 (27%), Positives = 137/304 (45%)
Query: 10 PEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFISMHLK-NDVNTRLIVIYAKEDNT 68
P D+M+EILSR+P KS R RCV W +L+++P ++ LK + L++ + E
Sbjct: 33 PTDLMVEILSRVPAKSAARFRCVSNDWNSLLRSPYLTNLFLKRSSARPHLLITFQAEGKW 92
Query: 69 EEHSHPKEYFCLFPDETLEDLSLQDLSTQEPVLGSFK------GLYCGI---VFIEGLNN 119
S P EY L D+ +L + D P SF GL C V +
Sbjct: 93 SFFSSP-EY--LISDQN-SNLVVVDNHMDVPKDYSFGVCVPVCGLMCTSNEWVLSRKRDA 148
Query: 120 RITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSS 179
R+ + N +T + +LPK R+ T IG+ +P K YKV L +T+ ++
Sbjct: 149 RMMICNPSTGQFKSLPKVRSCRGNVI----TYIGY--NPIEKQYKV-LCMTIREKPFKFK 201
Query: 180 CPFSLVTVYNLSTNSWRNLK-SIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHM 238
V WR L+ S+D+ +G ++L +++++ Y+ +SFHM
Sbjct: 202 AEEHQVLTLGTGKLKWRMLECSVDHYPYYHGS-ICINGVLFYLA-MKSESKEYMTVSFHM 259
Query: 239 AEEKFQEIQGPCTLESSLDVT--LG-IYDQSLSLLLLDTVDHCFKIWVMQKKN--WIKQS 293
+E F I L + ++ LG I +S + D D F++W++ N WI+
Sbjct: 260 KDENFMFIPNQDLLSTLINYKGRLGGIRHKSFGFM--DGGDVGFELWILDVVNQEWIRSI 317
Query: 294 SVGP 297
V P
Sbjct: 318 HVLP 321
|
|
| TAIR|locus:2075790 AT3G10430 "AT3G10430" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 206 (77.6 bits), Expect = 8.3e-15, Sum P(2) = 8.3e-15
Identities = 74/268 (27%), Positives = 127/268 (47%)
Query: 10 PEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPN-FISMHLKNDVNTRLIVIYAKEDNT 68
P D+++EIL R P +SL+R + CK WY LI N F+ HL D +T+ + +
Sbjct: 6 PFDLILEILQRTPAESLLRFKSTCKKWYELISNDKRFMYKHL--DKSTKRFLRIENRERV 63
Query: 69 EEHSHPKEYFCLFPDETLEDLSLQDLSTQEPVLGSFKGLYCGIVFIE-GLNNRITLWNIA 127
+ E + T+ + +L + L GL G+ + E G + + +WN
Sbjct: 64 QILDPVTEILAV---STIPN----ELRHKYFTLIHCDGLMLGMCYEELGSDPNLAVWNPV 116
Query: 128 TRESVTLPKYRAIIPQYTRVFGTK-IGFGLDPKTKD-YKVVLILTLWDEKRDSSCPFSLV 185
R+ K+ P +G+ +GFG D +D YK++ L D+ D S P
Sbjct: 117 MRKI----KWIKPSPPLVCYWGSDYLGFGYDKTFRDNYKILRFTYLGDDDDDESYP--KC 170
Query: 186 TVYNLSTNSWRNLKS-IDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQ 244
+Y ++ SWR++++ D + + + +G+ YW+ +L+ + N+ ILSF ++E F
Sbjct: 171 QIYEFNSGSWRSIEAKFDGEIDVEVDGVSVNGSMYWI-ELQ-EKKNF-ILSFDFSKETFN 227
Query: 245 EIQGPCTLESSLDVT-LGIYD-QSLSLL 270
I C D+ LG ++ LSLL
Sbjct: 228 RI---CDSPLYWDIKRLGCFNGDRLSLL 252
|
|
| TAIR|locus:2202425 AT1G47790 "AT1G47790" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 209 (78.6 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 87/306 (28%), Positives = 145/306 (47%)
Query: 10 PEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFISMHLKNDVNTR--LIVIYAKEDN 67
P D+ EIL RLPVKS++R RCV K W ++I +P FI + + +TR L+ + + D
Sbjct: 26 PLDLASEILLRLPVKSVVRFRCVSKLWSSIITDPYFIKTY-ETQSSTRQSLLFCFKQSDK 84
Query: 68 TEEHSHPKEYF-CLFPDETLED---LSL-QDLSTQEPVLGSFKGLYCGIVFIEGLNNRIT 122
S PK ++ + D + L Q+ S P S GL C V +
Sbjct: 85 LFVFSIPKHHYDSNSSSQAAIDRFQVKLPQEFSYPSPT-ESVHGLICFHVLAT-----VI 138
Query: 123 LWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPF 182
+WN + R+ +TLPK R + T VF G DP +KVV + R+ +C
Sbjct: 139 VWNPSMRQFLTLPKPRKSWKELT-VF-----LGYDPIEGKHKVVCL------PRNRTCDE 186
Query: 183 SLVTVYNLSTNSWRNLKSIDYTMRLSSERTY---FDGAFYWLLKLENDNDNYVILSFHMA 239
V + SWR +K+ + R S+ T+ G Y++ + + + I+SFH+
Sbjct: 187 CQVLTLGSAQKSWRTVKT-KHKHR-STNDTWGRCIKGVVYYIAYVYHTRV-WCIMSFHVK 243
Query: 240 EEKFQEIQGPCTLESSL-DVTLGIYDQSLSLL-LLDTVDHC-FKIWVMQ---KKNWIKQS 293
EKF I+ P LE+ DV + Y+ L+ + L T+++ ++W+++ K W +
Sbjct: 244 SEKFDMIKLP--LENIYRDVMIN-YEGRLACVDKLYTLNNDGIRLWILEDAEKHKWSSKQ 300
Query: 294 SVGPFI 299
+ ++
Sbjct: 301 FLARYV 306
|
|
| TAIR|locus:2196964 AT1G30790 "AT1G30790" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 204 (76.9 bits), Expect = 6.4e-14, P = 6.4e-14
Identities = 80/306 (26%), Positives = 135/306 (44%)
Query: 7 DDSPEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFI-SMHLKNDVNTRLIVIYAKE 65
D P D+ +EIL+RLP KSL++ +CV K W ++I N +FI S + + R IV ++
Sbjct: 7 DHIPFDLTVEILTRLPAKSLMKFKCVSKLWSSIIHNQSFIDSFYSISSTRPRFIVAFS-- 64
Query: 66 DNTEEHSHPKEYFCLFPD--ETLEDLS--LQDLSTQEPVLGSFKGLYCGIVFIEG----- 116
N S ++ +F E E S + +L T P L L + + G
Sbjct: 65 -NGSFPSDKEKRLFIFSSSHEGHESSSSVITNLDTTIPSLTVSNNLASRCISVNGFIACS 123
Query: 117 LNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKR 176
L R T+ N +TR+ + LP I+P G DP +K + +++ +
Sbjct: 124 LYTRFTICNPSTRQVIVLP----ILPSGRAPDMRSTCIGYDPVDDQFKALALISSCIPNK 179
Query: 177 DSSCPFSLVTVYNLSTN-SWRNLKSIDYTMRLS--SERTYFDGAFYWLLKLENDNDNYVI 233
DS+ ++T+ N SWR ++ + S + R +G Y+ + N VI
Sbjct: 180 DSTVEHLVLTLKGDKKNYSWRQIQGNNNIPPYSPVTMRVCINGVVYYGAWTPRQSMNAVI 239
Query: 234 LSFHMAEEKFQEIQGPC-TLESSLDVTLGIYDQSLSLLLLDTVDH--CFKIWVMQ---KK 287
+ F + EK I+ P + D L Y L+ ++ + F +WV++ K+
Sbjct: 240 VCFDVRSEKITFIKTPKDVVRWCNDSILMEYKGKLASIVRNRYSRFDTFDLWVLEDIEKQ 299
Query: 288 NWIKQS 293
W KQ+
Sbjct: 300 EWSKQT 305
|
|
| TAIR|locus:2100524 AT3G52320 "AT3G52320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 200 (75.5 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 71/249 (28%), Positives = 116/249 (46%)
Query: 10 PEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFISMHLKNDVNTRLIVIYAKEDNTE 69
PE+++I+IL RLP KSL+R +CV K W +LI + F + K + L +N
Sbjct: 28 PEEMLIDILIRLPAKSLMRFKCVSKLWLSLITSRYFTNRFFKPSSPSCLFAYLVDRENQS 87
Query: 70 EHSHPKEYFCLFPDETLEDLSLQDLSTQEPVLGSF-----KGLYCGIVFIEGLNNRITLW 124
++ + D + +S+ D + P++G + +GL C + G R+ +
Sbjct: 88 KYLLLQSSSSSRHDHSDTSVSVIDQHSTIPIMGGYLVNAARGLLC---YRTG--RRVKVC 142
Query: 125 NIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSL 184
N +TR+ V LP I+ T V+ FG DP +YKV+ + W+ ++ + S
Sbjct: 143 NPSTRQIVELP----IMRSKTNVWNW---FGHDPFHDEYKVLSLF--WEVTKEQTVVRSE 193
Query: 185 VTVYNLSTN-SWRNLKSIDYTMRLS---SERTYFDGAFYWLLKLENDNDNYVILSFHMAE 240
V L SWRN KS R S DG Y+ + D + V++SF ++
Sbjct: 194 HQVLVLGVGASWRNTKSHHTPHRPFHPYSRGMTIDGVLYYSAR--TDANRCVLMSFDLSS 251
Query: 241 EKFQEIQGP 249
E+F I+ P
Sbjct: 252 EEFNLIELP 260
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 376 | |||
| TIGR01640 | 230 | TIGR01640, F_box_assoc_1, F-box protein interactio | 2e-20 | |
| pfam00646 | 48 | pfam00646, F-box, F-box domain | 5e-09 | |
| smart00256 | 41 | smart00256, FBOX, A Receptor for Ubiquitination Ta | 1e-08 | |
| pfam12937 | 47 | pfam12937, F-box-like, F-box-like | 3e-08 | |
| pfam08268 | 125 | pfam08268, FBA_3, F-box associated domain | 3e-04 |
| >gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 2e-20
Identities = 51/182 (28%), Positives = 79/182 (43%), Gaps = 13/182 (7%)
Query: 119 NRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDS 178
R+ +WN +T +S LP + + G DP K YKV+ R
Sbjct: 14 KRLVVWNPSTGQSRWLPT---PKSRRSNKESDTYFLGYDPIEKQYKVLCF-----SDRSG 65
Query: 179 SCPFSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHM 238
+ S VY L +NSWR ++ L S +G Y+L N +Y I+SF +
Sbjct: 66 NRNQSEHQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDV 125
Query: 239 AEEKFQE-IQGPCTLESSLD-VTLGIYDQSLSLLLLDTVDHCFKIWVMQKK---NWIKQS 293
+ E+F+E I PC S+D ++L Y L++L + F +WV+ W K
Sbjct: 126 SSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLF 185
Query: 294 SV 295
+V
Sbjct: 186 TV 187
|
This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230 |
| >gnl|CDD|201368 pfam00646, F-box, F-box domain | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 5e-09
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 10 PEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFISMHLK 51
P+D+++EILSRL K L+RL V K W +L+ + L
Sbjct: 7 PDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKKRLL 48
|
This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48 |
| >gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 1e-08
Identities = 17/36 (47%), Positives = 26/36 (72%)
Query: 10 PEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNF 45
P++I+ EILS+L K L+RLR V + W +LI + +F
Sbjct: 2 PDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDF 37
|
Length = 41 |
| >gnl|CDD|221867 pfam12937, F-box-like, F-box-like | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 3e-08
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 10 PEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNP 43
P++I+++I S L + L+RL VC+ W L +
Sbjct: 5 PDEILLQIFSYLDPRDLLRLALVCRRWRELASDD 38
|
This is an F-box-like family. Length = 47 |
| >gnl|CDD|219769 pfam08268, FBA_3, F-box associated domain | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 3e-04
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 215 DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIYDQSLSLLLLDT 274
+G Y+ DN N VI+SF + EKF I+ P L + L TL Y L+ L+ T
Sbjct: 5 NGVLYYGAWTS-DNSNSVIVSFDVRSEKFSFIKLPVPLANLLSSTLINYKGKLA-LVSHT 62
Query: 275 VDHCFKIWVM---QKKNWIKQSSVGPF 298
++WV+ +K W K+ V P
Sbjct: 63 SLGGIELWVLEDAEKHEWSKKIFVLPP 89
|
Length = 125 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 376 | |||
| TIGR01640 | 230 | F_box_assoc_1 F-box protein interaction domain. Th | 100.0 | |
| PF07734 | 164 | FBA_1: F-box associated; InterPro: IPR006527 This | 99.67 | |
| PF08268 | 129 | FBA_3: F-box associated domain; InterPro: IPR01318 | 99.58 | |
| PLN03215 | 373 | ascorbic acid mannose pathway regulator 1; Provisi | 99.53 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 99.42 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 99.33 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 99.31 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 99.29 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 99.26 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 99.23 | |
| PLN02153 | 341 | epithiospecifier protein | 99.13 | |
| PLN02193 | 470 | nitrile-specifier protein | 99.04 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 98.97 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 98.93 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 98.93 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 98.92 | |
| PF12937 | 47 | F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B | 98.9 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 98.89 | |
| PLN02193 | 470 | nitrile-specifier protein | 98.89 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 98.89 | |
| PLN02153 | 341 | epithiospecifier protein | 98.87 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 98.76 | |
| PF00646 | 48 | F-box: F-box domain; InterPro: IPR001810 The F-box | 98.72 | |
| smart00256 | 41 | FBOX A Receptor for Ubiquitination Targets. | 98.7 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 98.7 | |
| KOG1230 | 521 | consensus Protein containing repeated kelch motifs | 98.18 | |
| KOG4693 | 392 | consensus Uncharacterized conserved protein, conta | 97.99 | |
| KOG4693 | 392 | consensus Uncharacterized conserved protein, conta | 97.91 | |
| KOG1230 | 521 | consensus Protein containing repeated kelch motifs | 97.82 | |
| KOG0379 | 482 | consensus Kelch repeat-containing proteins [Genera | 97.66 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 97.21 | |
| KOG0379 | 482 | consensus Kelch repeat-containing proteins [Genera | 97.21 | |
| PF13964 | 50 | Kelch_6: Kelch motif | 96.42 | |
| KOG2997 | 366 | consensus F-box protein FBX9 [General function pre | 96.33 | |
| PF02191 | 250 | OLF: Olfactomedin-like domain; InterPro: IPR003112 | 95.98 | |
| smart00284 | 255 | OLF Olfactomedin-like domains. | 95.6 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 95.44 | |
| PF01344 | 47 | Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is | 95.42 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 94.7 | |
| PF07646 | 49 | Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is | 94.2 | |
| TIGR01640 | 230 | F_box_assoc_1 F-box protein interaction domain. Th | 93.41 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 93.02 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 92.91 | |
| PF13964 | 50 | Kelch_6: Kelch motif | 92.83 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 92.55 | |
| KOG4152 | 830 | consensus Host cell transcription factor HCFC1 [Ce | 92.52 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 92.48 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 92.03 | |
| PF07893 | 342 | DUF1668: Protein of unknown function (DUF1668); In | 91.7 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 91.33 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 91.26 | |
| PF13418 | 49 | Kelch_4: Galactose oxidase, central domain; PDB: 2 | 90.58 | |
| smart00612 | 47 | Kelch Kelch domain. | 90.37 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 90.12 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 89.77 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 89.55 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 89.18 | |
| PF01344 | 47 | Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is | 88.78 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 88.39 | |
| PF13415 | 49 | Kelch_3: Galactose oxidase, central domain | 87.56 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 87.55 | |
| PLN02772 | 398 | guanylate kinase | 87.04 | |
| PF07762 | 131 | DUF1618: Protein of unknown function (DUF1618); In | 85.98 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 85.29 | |
| smart00612 | 47 | Kelch Kelch domain. | 85.05 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 84.17 | |
| COG3055 | 381 | Uncharacterized protein conserved in bacteria [Fun | 83.53 | |
| KOG3545 | 249 | consensus Olfactomedin and related extracellular m | 83.31 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 82.17 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 81.4 | |
| PF13418 | 49 | Kelch_4: Galactose oxidase, central domain; PDB: 2 | 81.28 | |
| PF07893 | 342 | DUF1668: Protein of unknown function (DUF1668); In | 80.23 |
| >TIGR01640 F_box_assoc_1 F-box protein interaction domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=252.41 Aligned_cols=216 Identities=25% Similarity=0.385 Sum_probs=163.7
Q ss_pred eeeecceEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcce
Q 048178 105 KGLYCGIVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSL 184 (376)
Q Consensus 105 ~~s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 184 (376)
++|||||||+... ..++||||+||+++.||+++........ ..++||||+.+++||||++.... .. .....
T Consensus 1 ~~sCnGLlc~~~~-~~~~V~NP~T~~~~~LP~~~~~~~~~~~---~~~~~G~d~~~~~YKVv~~~~~~--~~---~~~~~ 71 (230)
T TIGR01640 1 VVPCDGLICFSYG-KRLVVWNPSTGQSRWLPTPKSRRSNKES---DTYFLGYDPIEKQYKVLCFSDRS--GN---RNQSE 71 (230)
T ss_pred CcccceEEEEecC-CcEEEECCCCCCEEecCCCCCccccccc---ceEEEeecccCCcEEEEEEEeec--CC---CCCcc
Confidence 4799999998876 6789999999999999987543211111 14799999999999999985421 11 23579
Q ss_pred EEEEEcCCCceEeccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEe-eecCCCCCCCC-CceeEEE
Q 048178 185 VTVYNLSTNSWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQ-EIQGPCTLESS-LDVTLGI 262 (376)
Q Consensus 185 ~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~-~i~lP~~~~~~-~~~~l~~ 262 (376)
++||++++++||.++..+........+|++||++||++....+.....|++||+++|+|+ .+++|...... ....|++
T Consensus 72 ~~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~ 151 (230)
T TIGR01640 72 HQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLIN 151 (230)
T ss_pred EEEEEeCCCCccccccCCCCccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceEEEE
Confidence 999999999999988543322222349999999999997653221238999999999999 58998765422 3468999
Q ss_pred ecCeEEEEEecCCCCEEEEEEeCC---CceeeEEEECCC---Cce---eeeEEEeeCCcEEEEEcC--Ce-EEEEeCCCC
Q 048178 263 YDQSLSLLLLDTVDHCFKIWVMQK---KNWIKQSSVGPF---IGI---FQPLLFWKKGAFFVESNS--SQ-LLLYEPGTG 330 (376)
Q Consensus 263 ~~g~L~l~~~~~~~~~l~vW~l~~---~~W~~~~~i~~~---~~~---~~~~~~~~~g~i~~~~~~--~~-~~~yd~~t~ 330 (376)
++|+|+++........++||+|++ .+|+++++| +. ..+ ..|+++.++|+|++...+ +. +++||++++
T Consensus 152 ~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i-~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 152 YKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTV-PIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVGEN 230 (230)
T ss_pred ECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEE-cCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEeccCC
Confidence 999999999843345699999997 679999999 43 222 348899999999987664 44 999999986
|
This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. |
| >PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.8e-15 Score=123.06 Aligned_cols=138 Identities=25% Similarity=0.514 Sum_probs=100.1
Q ss_pred eEEECceEEEEeeecCCCCccEEEEEECCCceE-eeecCCCCCC-CCCceeEEEe-cCeEEEEEecCCCCEEEEEEeCC-
Q 048178 211 RTYFDGAFYWLLKLENDNDNYVILSFHMAEEKF-QEIQGPCTLE-SSLDVTLGIY-DQSLSLLLLDTVDHCFKIWVMQK- 286 (376)
Q Consensus 211 ~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~-~~i~lP~~~~-~~~~~~l~~~-~g~L~l~~~~~~~~~l~vW~l~~- 286 (376)
+|++||++||++..........|++||+++|+| ..+++|.... ......|++. +|+||++........++||+|++
T Consensus 1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~~ 80 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKKY 80 (164)
T ss_pred CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEeee
Confidence 589999999999876543223899999999999 8889998877 2244667555 67899998744466799999995
Q ss_pred ----CceeeEEEECCCCce---e-----eeEEEeeCCcEEEEEc--C-----CeEEEEeCCCCcEEEEEEec---ceEEE
Q 048178 287 ----KNWIKQSSVGPFIGI---F-----QPLLFWKKGAFFVESN--S-----SQLLLYEPGTGELRDFELEC---CWFSI 344 (376)
Q Consensus 287 ----~~W~~~~~i~~~~~~---~-----~~~~~~~~g~i~~~~~--~-----~~~~~yd~~t~~~~~v~~~~---~~~~~ 344 (376)
.+|+|.++|+ .... . ..+.+.+++++++..+ . ..++.|+ +.+..+++.+.. .++.+
T Consensus 81 ~~~~~SWtK~~~i~-~~~~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~~~~~~~~~~~~ 158 (164)
T PF07734_consen 81 GYGKESWTKLFTID-LPPLPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEVDIEDKSSCWPSI 158 (164)
T ss_pred ccCcceEEEEEEEe-cCCCCCcccccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEcccccCCCCCCCE
Confidence 6899999995 4322 1 2233344456665532 1 3577888 778888888743 28889
Q ss_pred EEeecC
Q 048178 345 YIYTES 350 (376)
Q Consensus 345 ~~y~~s 350 (376)
+.|+||
T Consensus 159 ~~YvpS 164 (164)
T PF07734_consen 159 CNYVPS 164 (164)
T ss_pred EEECCC
Confidence 999987
|
Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain. |
| >PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.2e-14 Score=111.02 Aligned_cols=105 Identities=30% Similarity=0.456 Sum_probs=80.5
Q ss_pred eEEECceEEEEeeecCCCCccEEEEEECCCceEeeecCCCC-CCCCCceeEEEecCeEEEEEecCC--CCEEEEEEeCC-
Q 048178 211 RTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCT-LESSLDVTLGIYDQSLSLLLLDTV--DHCFKIWVMQK- 286 (376)
Q Consensus 211 ~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~-~~~~~~~~l~~~~g~L~l~~~~~~--~~~l~vW~l~~- 286 (376)
++++||.+||++.... .....|++||+++|+|+.|++|.. ........|.+++|+|+++..... ...++||+|+|
T Consensus 1 gicinGvly~~a~~~~-~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~ 79 (129)
T PF08268_consen 1 GICINGVLYWLAWSED-SDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDY 79 (129)
T ss_pred CEEECcEEEeEEEECC-CCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecc
Confidence 5899999999998721 236799999999999999999922 122245789999999999998422 25799999998
Q ss_pred --CceeeEEEECCCC-------ceeeeEEEeeCCcEEEE
Q 048178 287 --KNWIKQSSVGPFI-------GIFQPLLFWKKGAFFVE 316 (376)
Q Consensus 287 --~~W~~~~~i~~~~-------~~~~~~~~~~~g~i~~~ 316 (376)
++|++...+-|.. ....+.++.++|+|++.
T Consensus 80 ~k~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 80 EKQEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred ccceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence 7899987653432 12567787888888876
|
Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain. |
| >PLN03215 ascorbic acid mannose pathway regulator 1; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.3e-12 Score=116.32 Aligned_cols=304 Identities=13% Similarity=0.129 Sum_probs=153.6
Q ss_pred CCCCCCCCHHHHHHHHhcCC-ccccceeeecchhhhhhcCChHHHHHHhhcCCCCcEEEEeeeccCccCCCCCceeEEec
Q 048178 3 LLGNDDSPEDIMIEILSRLP-VKSLIRLRCVCKSWYALIKNPNFISMHLKNDVNTRLIVIYAKEDNTEEHSHPKEYFCLF 81 (376)
Q Consensus 3 ~~~~~~LP~Dll~eIl~rLp-~~~l~r~r~VcK~W~~li~~p~F~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 81 (376)
++.++.||+|||..|..||| ..++.|+|+|||+||+.+.... + ....+++|+++...... ... +.
T Consensus 1 ~~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~-~~~~~~~~~~~~~~~~~----~~~------~~ 66 (373)
T PLN03215 1 MADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG---K-KNPFRTRPLILFNPINP----SET------LT 66 (373)
T ss_pred CCChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc---c-cCCcccccccccCcccC----CCC------cc
Confidence 46789999999999999998 7899999999999999876411 0 00011123333211000 000 00
Q ss_pred CCCCccccc-cccCCCCCCccc-eeeeeecceEEEeec---CCeEEEEecCccceeecCCCCCCCCC-ccccccceEEE-
Q 048178 82 PDETLEDLS-LQDLSTQEPVLG-SFKGLYCGIVFIEGL---NNRITLWNIATRESVTLPKYRAIIPQ-YTRVFGTKIGF- 154 (376)
Q Consensus 82 ~~~~~~~~~-~~~l~p~~~~~~-~~~~s~~Gll~~~~~---~~~~~V~NP~T~~~~~LP~~~~~~~~-~~~~~~~~~~~- 154 (376)
+ ++..... -..+.+...... ...++..|+|.-.++ ...+.+.||+++....+|+-...... ........+.+
T Consensus 67 ~-~~~~~~~~~~~ls~~~~~r~~~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l~ 145 (373)
T PLN03215 67 D-DRSYISRPGAFLSRAAFFRVTLSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQVL 145 (373)
T ss_pred c-cccccccccceeeeeEEEEeecCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccceEEEE
Confidence 0 0000000 000000000000 011356899987654 36789999999998877742211100 00000001111
Q ss_pred eeeCCC---CCeEEEEEEEEEecCCCCCCCcceEEEEEc------CCCceEeccccCccccCCCCeEEECceEEEEeeec
Q 048178 155 GLDPKT---KDYKVVLILTLWDEKRDSSCPFSLVTVYNL------STNSWRNLKSIDYTMRLSSERTYFDGAFYWLLKLE 225 (376)
Q Consensus 155 g~d~~~---~~ykvv~~~~~~~~~~~~~~~~~~~~vyss------~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~ 225 (376)
+.+... ..|+-+.+-......+ .......|+.- +.++|..++.... .-...++++|.+|-+...+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~vl~i~~~g~l~~w~~~~Wt~l~~~~~---~~~DIi~~kGkfYAvD~~G 219 (373)
T PLN03215 146 DWAKRRETRPGYQRSALVKVKEGDN---HRDGVLGIGRDGKINYWDGNVLKALKQMGY---HFSDIIVHKGQTYALDSIG 219 (373)
T ss_pred ecccccccccceeEEEEEEeecCCC---cceEEEEEeecCcEeeecCCeeeEccCCCc---eeeEEEEECCEEEEEcCCC
Confidence 111100 0132111111100000 00112222211 2467887763211 1235899999999985543
Q ss_pred CCCCccEEEEEECCCceEeeecCCC--CC--CC-CCceeEEEecCeEEEEEec--C-------------CCCEEEEEEeC
Q 048178 226 NDNDNYVILSFHMAEEKFQEIQGPC--TL--ES-SLDVTLGIYDQSLSLLLLD--T-------------VDHCFKIWVMQ 285 (376)
Q Consensus 226 ~~~~~~~i~~fD~~~e~~~~i~lP~--~~--~~-~~~~~l~~~~g~L~l~~~~--~-------------~~~~l~vW~l~ 285 (376)
.+.++|.+-+ ...+..+. .. +. .....|++..|.|+++... . ....++||.++
T Consensus 220 ------~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD 292 (373)
T PLN03215 220 ------IVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFD 292 (373)
T ss_pred ------eEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEc
Confidence 5666663321 12221111 01 11 1236799999999999882 1 12468999998
Q ss_pred C--CceeeEEEECCCCce----eeeEEEe-------eCCcEEEEEcCCeEEEEeCCCCcEEEEE
Q 048178 286 K--KNWIKQSSVGPFIGI----FQPLLFW-------KKGAFFVESNSSQLLLYEPGTGELRDFE 336 (376)
Q Consensus 286 ~--~~W~~~~~i~~~~~~----~~~~~~~-------~~g~i~~~~~~~~~~~yd~~t~~~~~v~ 336 (376)
. .+|+++.+++ -..+ ...+++. +.+.||+.... ...+||++.++...+.
T Consensus 293 ~~~~~WveV~sLg-d~aLFlG~~~s~sv~a~e~pG~k~NcIYFtdd~-~~~v~~~~dg~~~~~~ 354 (373)
T PLN03215 293 DELAKWMEVKTLG-DNAFVMATDTCFSVLAHEFYGCLPNSIYFTEDT-MPKVFKLDNGNGSSIE 354 (373)
T ss_pred CCCCcEEEecccC-CeEEEEECCccEEEecCCCCCccCCEEEEECCC-cceEEECCCCCccceE
Confidence 7 8899999885 2222 1111211 23448887544 4789999999977653
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.1e-11 Score=118.71 Aligned_cols=213 Identities=10% Similarity=0.050 Sum_probs=143.6
Q ss_pred eeeecceEEEeec-------CCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCC
Q 048178 105 KGLYCGIVFIEGL-------NNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRD 177 (376)
Q Consensus 105 ~~s~~Gll~~~~~-------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~ 177 (376)
++..+|.|.+..+ ...+..+||.+++|..+|+++..+.. . .....+ + ||..++.. +..
T Consensus 299 ~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~-~------~~~~~~---g--~IYviGG~--~~~- 363 (557)
T PHA02713 299 SAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCR-F------SLAVID---D--TIYAIGGQ--NGT- 363 (557)
T ss_pred EEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhc-e------eEEEEC---C--EEEEECCc--CCC-
Confidence 3455666655533 14578999999999999998754321 1 111122 1 44444321 110
Q ss_pred CCCCcceEEEEEcCCCceEeccccCccccCCCCeEEECceEEEEeeecCCC------------------CccEEEEEECC
Q 048178 178 SSCPFSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDN------------------DNYVILSFHMA 239 (376)
Q Consensus 178 ~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~------------------~~~~i~~fD~~ 239 (376)
.....++.|++.+++|+.++.+|.... ...++.++|.+|.+++..... ....+.+||++
T Consensus 364 --~~~~sve~Ydp~~~~W~~~~~mp~~r~-~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~ 440 (557)
T PHA02713 364 --NVERTIECYTMGDDKWKMLPDMPIALS-SYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTV 440 (557)
T ss_pred --CCCceEEEEECCCCeEEECCCCCcccc-cccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCC
Confidence 224579999999999999987765433 234778999999998653210 12468999999
Q ss_pred CceEeee-cCCCCCCCCCceeEEEecCeEEEEEecCC----CCEEEEEEeCC-CceeeEEEECCCCceeeeEEEeeCCcE
Q 048178 240 EEKFQEI-QGPCTLESSLDVTLGIYDQSLSLLLLDTV----DHCFKIWVMQK-KNWIKQSSVGPFIGIFQPLLFWKKGAF 313 (376)
Q Consensus 240 ~e~~~~i-~lP~~~~~~~~~~l~~~~g~L~l~~~~~~----~~~l~vW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~g~i 313 (376)
+++|+.+ ++|..... ..+++++|+|+++++..+ ...++.+..+. ++|+.+..+ |.+....-+++. +|.|
T Consensus 441 td~W~~v~~m~~~r~~---~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m-~~~r~~~~~~~~-~~~i 515 (557)
T PHA02713 441 NNIWETLPNFWTGTIR---PGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTT-ESRLSALHTILH-DNTI 515 (557)
T ss_pred CCeEeecCCCCccccc---CcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcccc-CcccccceeEEE-CCEE
Confidence 9999988 55555433 578899999999987321 13467777776 689999888 665433333333 7889
Q ss_pred EEEEc-CC--eEEEEeCCCCcEEEEEEecc
Q 048178 314 FVESN-SS--QLLLYEPGTGELRDFELECC 340 (376)
Q Consensus 314 ~~~~~-~~--~~~~yd~~t~~~~~v~~~~~ 340 (376)
++.++ ++ .+-.||++|++|+.+.-++.
T Consensus 516 yv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 516 MMLHCYESYMLQDTFNVYTYEWNHICHQHS 545 (557)
T ss_pred EEEeeecceeehhhcCcccccccchhhhcC
Confidence 88754 22 48899999999999976654
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2e-10 Score=113.03 Aligned_cols=195 Identities=14% Similarity=0.128 Sum_probs=130.6
Q ss_pred eEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceEecc
Q 048178 120 RITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRNLK 199 (376)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~ 199 (376)
.+..+||.+++|..+++++..... . .....+ + +|..++.. ... ......++.|++.++.|..++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~------~~a~l~----~-~IYviGG~--~~~--~~~~~~v~~Yd~~~n~W~~~~ 336 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-Y------ASAIVD----N-EIIIAGGY--NFN--NPSLNKVYKINIENKIHVELP 336 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-e------EEEEEC----C-EEEEEcCC--CCC--CCccceEEEEECCCCeEeeCC
Confidence 457899999999999988754321 1 111111 1 44444321 100 012457899999999999998
Q ss_pred ccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeee-cCCCCCCCCCceeEEEecCeEEEEEecCC---
Q 048178 200 SIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCTLESSLDVTLGIYDQSLSLLLLDTV--- 275 (376)
Q Consensus 200 ~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~~~g~L~l~~~~~~--- 275 (376)
.++.... ....+.++|++|.+++.........+.+||+.+++|..+ ++|..... ...++++|+|+++++...
T Consensus 337 ~m~~~R~-~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~---~~~~~~~g~IYviGG~~~~~~ 412 (557)
T PHA02713 337 PMIKNRC-RFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSS---YGMCVLDQYIYIIGGRTEHID 412 (557)
T ss_pred CCcchhh-ceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCccccc---ccEEEECCEEEEEeCCCcccc
Confidence 7754332 335789999999998864322234699999999999988 66665543 467789999999987321
Q ss_pred ------------------CCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEcC-------CeEEEEeCCC-
Q 048178 276 ------------------DHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESNS-------SQLLLYEPGT- 329 (376)
Q Consensus 276 ------------------~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~-------~~~~~yd~~t- 329 (376)
...++.+..+.++|..+..+ +.......++ .-+|.||+.++. ..+..||+++
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m-~~~r~~~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~ 490 (557)
T PHA02713 413 YTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF-WTGTIRPGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTY 490 (557)
T ss_pred cccccccccccccccccccceEEEECCCCCeEeecCCC-CcccccCcEE-EECCEEEEEeCCCCCCccceeEEEecCCCC
Confidence 23466666666899988777 4443222233 347889887541 2367999999
Q ss_pred CcEEEEE
Q 048178 330 GELRDFE 336 (376)
Q Consensus 330 ~~~~~v~ 336 (376)
++|+.+.
T Consensus 491 ~~W~~~~ 497 (557)
T PHA02713 491 NGWELIT 497 (557)
T ss_pred CCeeEcc
Confidence 8999884
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.9e-10 Score=112.82 Aligned_cols=210 Identities=10% Similarity=0.127 Sum_probs=146.4
Q ss_pred eeeeecceEEEeec-------CCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCC
Q 048178 104 FKGLYCGIVFIEGL-------NNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKR 176 (376)
Q Consensus 104 ~~~s~~Gll~~~~~-------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~ 176 (376)
-++..+|.|....+ .+.+..+||.+++|..+|++...+... +.+. =..+|.+++.. ..
T Consensus 327 ~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~--------~v~~----l~g~iYavGG~-dg-- 391 (571)
T KOG4441|consen 327 GVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF--------GVAV----LDGKLYAVGGF-DG-- 391 (571)
T ss_pred cEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc--------eeEE----ECCEEEEEecc-cc--
Confidence 35566777766533 246799999999999999987664221 1110 11234444321 11
Q ss_pred CCCCCcceEEEEEcCCCceEeccccCccccCCCCeEEECceEEEEeeecCCC-CccEEEEEECCCceEeee-cCCCCCCC
Q 048178 177 DSSCPFSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDN-DNYVILSFHMAEEKFQEI-QGPCTLES 254 (376)
Q Consensus 177 ~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~~i~~fD~~~e~~~~i-~lP~~~~~ 254 (376)
...-..+|.|+.+++.|..++.++. ......++.++|.+|-+++..... .-..+.+||+.+++|+.+ +++.....
T Consensus 392 --~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~ 468 (571)
T KOG4441|consen 392 --EKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSG 468 (571)
T ss_pred --ccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccccc
Confidence 1335689999999999999997765 223345789999999998866543 357899999999999988 66666544
Q ss_pred CCceeEEEecCeEEEEEecCC---CCEEEEEEeCCCceeeEEEECCCCceeeeEEE-eeCCcEEEEEc------CCeEEE
Q 048178 255 SLDVTLGIYDQSLSLLLLDTV---DHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLF-WKKGAFFVESN------SSQLLL 324 (376)
Q Consensus 255 ~~~~~l~~~~g~L~l~~~~~~---~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~-~~~g~i~~~~~------~~~~~~ 324 (376)
..+++++|+|++++..++ ...++.+..+...|..+..+ +... ...++ .-++.+|+..+ -..+-.
T Consensus 469 ---~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m-~~~r--s~~g~~~~~~~ly~vGG~~~~~~l~~ve~ 542 (571)
T KOG4441|consen 469 ---FGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPM-TSPR--SAVGVVVLGGKLYAVGGFDGNNNLNTVEC 542 (571)
T ss_pred ---ceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccC-cccc--ccccEEEECCEEEEEecccCccccceeEE
Confidence 568999999999999433 34577777777999999666 3331 22222 33677887743 245999
Q ss_pred EeCCCCcEEEEEE
Q 048178 325 YEPGTGELRDFEL 337 (376)
Q Consensus 325 yd~~t~~~~~v~~ 337 (376)
||+++++|+.+.-
T Consensus 543 ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 543 YDPETDTWTEVTE 555 (571)
T ss_pred cCCCCCceeeCCC
Confidence 9999999998743
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.3e-10 Score=106.65 Aligned_cols=195 Identities=10% Similarity=0.082 Sum_probs=131.1
Q ss_pred ecceEEEeec------CCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCC
Q 048178 108 YCGIVFIEGL------NNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCP 181 (376)
Q Consensus 108 ~~Gll~~~~~------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~ 181 (376)
.++.+.+..+ ...+..+||.+++|..+|+++..+.. . .+...| + +|..++.. + .
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~-~------~~v~~~---~--~iYviGG~--~------~ 329 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY-A------SGVPAN---N--KLYVVGGL--P------N 329 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc-c------eEEEEC---C--EEEEECCc--C------C
Confidence 4555544433 23567899999999999998754321 1 111111 1 34444221 1 1
Q ss_pred cceEEEEEcCCCceEeccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeee-cCCCCCCCCCceeE
Q 048178 182 FSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCTLESSLDVTL 260 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l 260 (376)
...++.|+..+++|..++.++.... ...++.++|.+|.+++.... ...+..||+++++|+.+ ++|..... ...
T Consensus 330 ~~sve~ydp~~n~W~~~~~l~~~r~-~~~~~~~~g~IYviGG~~~~--~~~ve~ydp~~~~W~~~~~m~~~r~~---~~~ 403 (480)
T PHA02790 330 PTSVERWFHGDAAWVNMPSLLKPRC-NPAVASINNVIYVIGGHSET--DTTTEYLLPNHDQWQFGPSTYYPHYK---SCA 403 (480)
T ss_pred CCceEEEECCCCeEEECCCCCCCCc-ccEEEEECCEEEEecCcCCC--CccEEEEeCCCCEEEeCCCCCCcccc---ceE
Confidence 2458999999999999987754332 33578999999999875432 34688999999999988 44444332 467
Q ss_pred EEecCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEcC------CeEEEEeCCCCcEEE
Q 048178 261 GIYDQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESNS------SQLLLYEPGTGELRD 334 (376)
Q Consensus 261 ~~~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~------~~~~~yd~~t~~~~~ 334 (376)
++++|+|++++. ..+++..+.++|+.+..+ +.+.....++ .-+|+||+.++. ..+..||+++++|+.
T Consensus 404 ~~~~~~IYv~GG-----~~e~ydp~~~~W~~~~~m-~~~r~~~~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~ 476 (480)
T PHA02790 404 LVFGRRLFLVGR-----NAEFYCESSNTWTLIDDP-IYPRDNPELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNI 476 (480)
T ss_pred EEECCEEEEECC-----ceEEecCCCCcEeEcCCC-CCCccccEEE-EECCEEEEECCcCCCcccceEEEEECCCCeEEe
Confidence 789999999885 256777777999998777 5543333333 337889987541 358899999999975
Q ss_pred E
Q 048178 335 F 335 (376)
Q Consensus 335 v 335 (376)
-
T Consensus 477 ~ 477 (480)
T PHA02790 477 W 477 (480)
T ss_pred c
Confidence 3
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.8e-10 Score=110.80 Aligned_cols=196 Identities=12% Similarity=0.148 Sum_probs=140.0
Q ss_pred CeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceEec
Q 048178 119 NRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRNL 198 (376)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~ 198 (376)
..+..+||.+++|..+.+++..+.... .+.++ + +|..++. +... ......++.|++.+++|..+
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~-----~~~~~-----~--~lYv~GG-~~~~---~~~l~~ve~YD~~~~~W~~~ 364 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVG-----VAVLN-----G--KLYVVGG-YDSG---SDRLSSVERYDPRTNQWTPV 364 (571)
T ss_pred ceeEEecCCcCcEeecCCCCccccccc-----EEEEC-----C--EEEEEcc-ccCC---CcccceEEEecCCCCceecc
Confidence 456789999999999998886543211 11111 1 4444432 1110 13457999999999999998
Q ss_pred cccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeee-cCCCCCCCCCceeEEEecCeEEEEEec-CCC
Q 048178 199 KSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCTLESSLDVTLGIYDQSLSLLLLD-TVD 276 (376)
Q Consensus 199 ~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~~~g~L~l~~~~-~~~ 276 (376)
+.+.... .....+.++|.+|-+++.........+..||+.+++|..+ +++..... ...++++|+||++++. ...
T Consensus 365 a~M~~~R-~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~---~gv~~~~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 365 APMNTKR-SDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSG---HGVAVLGGKLYIIGGGDGSS 440 (571)
T ss_pred CCccCcc-ccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceee---eEEEEECCEEEEEcCcCCCc
Confidence 8774433 2335789999999999877544466799999999999998 56664433 6788999999999993 222
Q ss_pred ---CEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEcC------CeEEEEeCCCCcEEEEE
Q 048178 277 ---HCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESNS------SQLLLYEPGTGELRDFE 336 (376)
Q Consensus 277 ---~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~------~~~~~yd~~t~~~~~v~ 336 (376)
..++.+....+.|..+..| +.......+++. +|.||..++. ..+-.||+++++|..+.
T Consensus 441 ~~l~sve~YDP~t~~W~~~~~M-~~~R~~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 441 NCLNSVECYDPETNTWTLIAPM-NTRRSGFGVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred cccceEEEEcCCCCceeecCCc-ccccccceEEEE-CCEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence 5778888888999999888 555333334434 7889988542 34889999999999995
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.9e-09 Score=106.44 Aligned_cols=195 Identities=11% Similarity=0.107 Sum_probs=127.1
Q ss_pred eEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceEecc
Q 048178 120 RITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRNLK 199 (376)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~ 199 (376)
.++.+||.|++|..+|+++..+... .....+ + +|..++.. ... .....+++|+..+++|+.++
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~-------~~~~~~---~--~lyv~GG~-~~~----~~~~~v~~yd~~~~~W~~~~ 374 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNP-------GVTVFN---N--RIYVIGGI-YNS----ISLNTVESWKPGESKWREEP 374 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccc-------eEEEEC---C--EEEEEeCC-CCC----EecceEEEEcCCCCceeeCC
Confidence 5789999999999999877543211 111111 1 34444321 111 22457899999999999988
Q ss_pred ccCccccCCCCeEEECceEEEEeeecCC-CCccEEEEEECCCceEeee-cCCCCCCCCCceeEEEecCeEEEEEecCC--
Q 048178 200 SIDYTMRLSSERTYFDGAFYWLLKLEND-NDNYVILSFHMAEEKFQEI-QGPCTLESSLDVTLGIYDQSLSLLLLDTV-- 275 (376)
Q Consensus 200 ~~~~~~~~~~~~v~~~G~lywl~~~~~~-~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~~~g~L~l~~~~~~-- 275 (376)
.+|... ....++.++|.+|-+++.... .....+..||+.+++|..+ ++|..... ...+..+|+|+++++...
T Consensus 375 ~lp~~r-~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~---~~~~~~~~~iyv~GG~~~~~ 450 (534)
T PHA03098 375 PLIFPR-YNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG---GCAIYHDGKIYVIGGISYID 450 (534)
T ss_pred CcCcCC-ccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC---ceEEEECCEEEEECCccCCC
Confidence 665432 233467889999998874321 1235789999999999988 55654433 456778999999987311
Q ss_pred ----CCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEc------CCeEEEEeCCCCcEEEEEE
Q 048178 276 ----DHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESN------SSQLLLYEPGTGELRDFEL 337 (376)
Q Consensus 276 ----~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~------~~~~~~yd~~t~~~~~v~~ 337 (376)
...+.++..+..+|..+..+ +.+......+ .-++.|++.++ ...+..||+++++|+.+.-
T Consensus 451 ~~~~~~~v~~yd~~~~~W~~~~~~-~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 451 NIKVYNIVESYNPVTNKWTELSSL-NFPRINASLC-IFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred CCcccceEEEecCCCCceeeCCCC-CcccccceEE-EECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCC
Confidence 12344444445899998766 4443222223 23788887753 2469999999999998853
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.2e-08 Score=92.00 Aligned_cols=205 Identities=11% Similarity=0.099 Sum_probs=122.5
Q ss_pred CeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceEec
Q 048178 119 NRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRNL 198 (376)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~ 198 (376)
+.++++||.+++|..+|+.......... ......++ + +|+.++.. ... .....+++|++++++|+.+
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~---~~~~~~~~---~--~iyv~GG~-~~~----~~~~~v~~yd~~t~~W~~~ 116 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCL---GVRMVAVG---T--KLYIFGGR-DEK----REFSDFYSYDTVKNEWTFL 116 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccC---ceEEEEEC---C--EEEEECCC-CCC----CccCcEEEEECCCCEEEEe
Confidence 3689999999999998875422111000 00111111 1 44444321 111 1235789999999999988
Q ss_pred cccCc---ccc-CCCCeEEECceEEEEeeecCCC------CccEEEEEECCCceEeeecCCCCC-CCCCceeEEEecCeE
Q 048178 199 KSIDY---TMR-LSSERTYFDGAFYWLLKLENDN------DNYVILSFHMAEEKFQEIQGPCTL-ESSLDVTLGIYDQSL 267 (376)
Q Consensus 199 ~~~~~---~~~-~~~~~v~~~G~lywl~~~~~~~------~~~~i~~fD~~~e~~~~i~lP~~~-~~~~~~~l~~~~g~L 267 (376)
+.+.. ..+ ....++..+|++|.+++..... ....+.+||+++.+|..++.+... .......+++++|++
T Consensus 117 ~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~i 196 (341)
T PLN02153 117 TKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKI 196 (341)
T ss_pred ccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeE
Confidence 75421 111 2334678899999988754211 113588999999999987533211 111224577889999
Q ss_pred EEEEecC-----------CCCEEEEEEeCCCceeeEEEEC--CCCceeeeEEEeeCCcEEEEEcC---------------
Q 048178 268 SLLLLDT-----------VDHCFKIWVMQKKNWIKQSSVG--PFIGIFQPLLFWKKGAFFVESNS--------------- 319 (376)
Q Consensus 268 ~l~~~~~-----------~~~~l~vW~l~~~~W~~~~~i~--~~~~~~~~~~~~~~g~i~~~~~~--------------- 319 (376)
+++.... ....++++.++..+|+++...+ |......... .-++.||+....
T Consensus 197 yv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~ 275 (341)
T PLN02153 197 WVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHA-VVGKYIIIFGGEVWPDLKGHLGPGTLS 275 (341)
T ss_pred EEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeE-EECCEEEEECcccCCcccccccccccc
Confidence 9987521 0234566666668999987543 3322222222 335677776431
Q ss_pred CeEEEEeCCCCcEEEEEE
Q 048178 320 SQLLLYEPGTGELRDFEL 337 (376)
Q Consensus 320 ~~~~~yd~~t~~~~~v~~ 337 (376)
..++.||+++++|+++.-
T Consensus 276 n~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 276 NEGYALDTETLVWEKLGE 293 (341)
T ss_pred ccEEEEEcCccEEEeccC
Confidence 258999999999999853
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.5e-08 Score=92.80 Aligned_cols=204 Identities=9% Similarity=0.061 Sum_probs=123.2
Q ss_pred eEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceEecc
Q 048178 120 RITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRNLK 199 (376)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~ 199 (376)
.++++||.+++|..+|+....+..... ......++ . ++..+.. +... .....+++|++.+++|+.+.
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~P~~~~~---~~~~v~~~----~-~lYvfGG-~~~~----~~~ndv~~yD~~t~~W~~l~ 260 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDVPHLSCL---GVRMVSIG----S-TLYVFGG-RDAS----RQYNGFYSFDTTTNEWKLLT 260 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCCCCCccc---ceEEEEEC----C-EEEEECC-CCCC----CCCccEEEEECCCCEEEEcC
Confidence 588999999999988764221110000 01111121 1 3333321 1111 22457899999999999987
Q ss_pred ccCcc-cc-CCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCC-CCceeEEEecCeEEEEEecCC-
Q 048178 200 SIDYT-MR-LSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLES-SLDVTLGIYDQSLSLLLLDTV- 275 (376)
Q Consensus 200 ~~~~~-~~-~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~-~~~~~l~~~~g~L~l~~~~~~- 275 (376)
.+... .+ ....++..++.+|.++..........+.+||+.+.+|..++.|..... .....+++++|+++++.....
T Consensus 261 ~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~ 340 (470)
T PLN02193 261 PVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC 340 (470)
T ss_pred cCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC
Confidence 54211 11 223467789999998875432224468899999999998865432211 123466778999999887321
Q ss_pred -CCEEEEEEeCCCceeeEEEEC--CCCceeeeEEEeeCCcEEEEEcC---------------CeEEEEeCCCCcEEEEEE
Q 048178 276 -DHCFKIWVMQKKNWIKQSSVG--PFIGIFQPLLFWKKGAFFVESNS---------------SQLLLYEPGTGELRDFEL 337 (376)
Q Consensus 276 -~~~l~vW~l~~~~W~~~~~i~--~~~~~~~~~~~~~~g~i~~~~~~---------------~~~~~yd~~t~~~~~v~~ 337 (376)
...+.++.++..+|.++..++ |.+......+ .-++.|++.... ..++.||+.|++|+++..
T Consensus 341 ~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~ 419 (470)
T PLN02193 341 EVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA-AVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDK 419 (470)
T ss_pred ccCceEEEECCCCEEEEeccCCCCCCCcceeEEE-EECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEccc
Confidence 244555555558999987653 3322222223 336777776431 238999999999999864
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.7e-07 Score=87.31 Aligned_cols=214 Identities=13% Similarity=0.163 Sum_probs=125.6
Q ss_pred eecceEEEeec--CCeEEEEec--CccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCC--CCC
Q 048178 107 LYCGIVFIEGL--NNRITLWNI--ATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRD--SSC 180 (376)
Q Consensus 107 s~~Gll~~~~~--~~~~~V~NP--~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~--~~~ 180 (376)
..++-|.+..+ ...+++.++ .+++|..+|+++....... .....+ + +|..++.. ..... ...
T Consensus 15 ~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~------~~~~~~---~--~iYv~GG~-~~~~~~~~~~ 82 (346)
T TIGR03547 15 IIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQA------VAAAID---G--KLYVFGGI-GKANSEGSPQ 82 (346)
T ss_pred EECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccc------eEEEEC---C--EEEEEeCC-CCCCCCCcce
Confidence 44566655433 345677774 6788999998763221111 111111 1 44444321 11000 001
Q ss_pred CcceEEEEEcCCCceEeccccCccccC-CCCeE-EECceEEEEeeecCCC------------------------------
Q 048178 181 PFSLVTVYNLSTNSWRNLKSIDYTMRL-SSERT-YFDGAFYWLLKLENDN------------------------------ 228 (376)
Q Consensus 181 ~~~~~~vyss~t~~W~~~~~~~~~~~~-~~~~v-~~~G~lywl~~~~~~~------------------------------ 228 (376)
....++.|+..+++|+.++.+ ..... ...++ .++|++|.+++.....
T Consensus 83 ~~~~v~~Yd~~~~~W~~~~~~-~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (346)
T TIGR03547 83 VFDDVYRYDPKKNSWQKLDTR-SPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPP 161 (346)
T ss_pred ecccEEEEECCCCEEecCCCC-CCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCCh
Confidence 135799999999999998732 11111 12233 6899999988653110
Q ss_pred ----CccEEEEEECCCceEeee-cCCCCCCCCCceeEEEecCeEEEEEecC--CCCEEEEE--EeCC--CceeeEEEECC
Q 048178 229 ----DNYVILSFHMAEEKFQEI-QGPCTLESSLDVTLGIYDQSLSLLLLDT--VDHCFKIW--VMQK--KNWIKQSSVGP 297 (376)
Q Consensus 229 ----~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~~~g~L~l~~~~~--~~~~l~vW--~l~~--~~W~~~~~i~~ 297 (376)
....+.+||+++++|+.+ ++|.... ....+++++|+|++++... .....++| .++. .+|..+..+ |
T Consensus 162 ~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m-~ 238 (346)
T TIGR03547 162 EDYFWNKNVLSYDPSTNQWRNLGENPFLGT--AGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPL-P 238 (346)
T ss_pred hHcCccceEEEEECCCCceeECccCCCCcC--CCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCC-C
Confidence 014699999999999998 5664211 1256778899999999832 12233454 4433 689998877 5
Q ss_pred CCce------eeeEEEeeCCcEEEEEcC-----------------------CeEEEEeCCCCcEEEEE
Q 048178 298 FIGI------FQPLLFWKKGAFFVESNS-----------------------SQLLLYEPGTGELRDFE 336 (376)
Q Consensus 298 ~~~~------~~~~~~~~~g~i~~~~~~-----------------------~~~~~yd~~t~~~~~v~ 336 (376)
.+.. ....++.-+|+|++.... ..+-.||+++++|+++.
T Consensus 239 ~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~ 306 (346)
T TIGR03547 239 PPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVG 306 (346)
T ss_pred CCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccC
Confidence 4321 111123347888877431 13679999999999885
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.7e-07 Score=83.53 Aligned_cols=151 Identities=14% Similarity=0.138 Sum_probs=98.8
Q ss_pred cceEEEEEcCCCce----EeccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeee-cCCCCCCCCC
Q 048178 182 FSLVTVYNLSTNSW----RNLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCTLESSL 256 (376)
Q Consensus 182 ~~~~~vyss~t~~W----~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~ 256 (376)
...++.|+..++.| +.++.+|.... ...++.++|.+|.+++.........+.+||+++++|+.+ ++|.... .
T Consensus 87 ~~~v~~~d~~~~~w~~~~~~~~~lp~~~~-~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r--~ 163 (323)
T TIGR03548 87 FSSVYRITLDESKEELICETIGNLPFTFE-NGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPR--V 163 (323)
T ss_pred ceeEEEEEEcCCceeeeeeEcCCCCcCcc-CceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCC--C
Confidence 45788899999988 56655543322 235778899999998753322245799999999999988 4664321 1
Q ss_pred ceeEEEecCeEEEEEecCCC--CEEEEEEeCCCceeeEEEECCCCce-----eeeEEEeeCCcEEEEEcC----------
Q 048178 257 DVTLGIYDQSLSLLLLDTVD--HCFKIWVMQKKNWIKQSSVGPFIGI-----FQPLLFWKKGAFFVESNS---------- 319 (376)
Q Consensus 257 ~~~l~~~~g~L~l~~~~~~~--~~l~vW~l~~~~W~~~~~i~~~~~~-----~~~~~~~~~g~i~~~~~~---------- 319 (376)
...+++.+++|++++..... ..+.++..+..+|.++..+ +.... .....+..++.|++....
T Consensus 164 ~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~-~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 242 (323)
T TIGR03548 164 QPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADP-TTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVI 242 (323)
T ss_pred cceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCC-CCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHh
Confidence 24567889999999984222 2344555555889987654 21111 111122335677776331
Q ss_pred ----------------------------CeEEEEeCCCCcEEEEE
Q 048178 320 ----------------------------SQLLLYEPGTGELRDFE 336 (376)
Q Consensus 320 ----------------------------~~~~~yd~~t~~~~~v~ 336 (376)
..+..||+++++|+.+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~ 287 (323)
T TIGR03548 243 DLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIG 287 (323)
T ss_pred hhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcc
Confidence 35999999999999986
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.7e-08 Score=95.57 Aligned_cols=164 Identities=9% Similarity=0.065 Sum_probs=116.1
Q ss_pred cceEEEEEcCCCceEeccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeee-cCCCCCCCCCceeE
Q 048178 182 FSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCTLESSLDVTL 260 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l 260 (376)
...++.|++.+++|..++.++.... ....+.++|.+|.+++... ...+..||+.+++|..+ ++|..... ...
T Consensus 286 ~~~v~~Ydp~~~~W~~~~~m~~~r~-~~~~v~~~~~iYviGG~~~---~~sve~ydp~~n~W~~~~~l~~~r~~---~~~ 358 (480)
T PHA02790 286 HNNAIAVNYISNNWIPIPPMNSPRL-YASGVPANNKLYVVGGLPN---PTSVERWFHGDAAWVNMPSLLKPRCN---PAV 358 (480)
T ss_pred CCeEEEEECCCCEEEECCCCCchhh-cceEEEECCEEEEECCcCC---CCceEEEECCCCeEEECCCCCCCCcc---cEE
Confidence 4578899999999999987754332 2346789999999987642 34689999999999988 66654433 577
Q ss_pred EEecCeEEEEEec-CCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEcCCeEEEEeCCCCcEEEEEEe-
Q 048178 261 GIYDQSLSLLLLD-TVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGELRDFELE- 338 (376)
Q Consensus 261 ~~~~g~L~l~~~~-~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~yd~~t~~~~~v~~~- 338 (376)
++++|+|+++++. .....++.|..+.++|..+..+ +.+... ..++.-+|.||+.++ ....||+++++|+.+.--
T Consensus 359 ~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m-~~~r~~-~~~~~~~~~IYv~GG--~~e~ydp~~~~W~~~~~m~ 434 (480)
T PHA02790 359 ASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPST-YYPHYK-SCALVFGRRLFLVGR--NAEFYCESSNTWTLIDDPI 434 (480)
T ss_pred EEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCC-CCcccc-ceEEEECCEEEEECC--ceEEecCCCCcEeEcCCCC
Confidence 8999999999983 2235688888877999998766 444322 233344788998864 367899999999988532
Q ss_pred cc--eEEEEEeecCccccCC
Q 048178 339 CC--WFSIYIYTESLITLKG 356 (376)
Q Consensus 339 ~~--~~~~~~y~~sLv~~~~ 356 (376)
.. ...+......+.-+++
T Consensus 435 ~~r~~~~~~v~~~~IYviGG 454 (480)
T PHA02790 435 YPRDNPELIIVDNKLLLIGG 454 (480)
T ss_pred CCccccEEEEECCEEEEECC
Confidence 11 4445555554444443
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.8e-08 Score=95.45 Aligned_cols=214 Identities=14% Similarity=0.151 Sum_probs=133.1
Q ss_pred eEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceEecc
Q 048178 120 RITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRNLK 199 (376)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~ 199 (376)
.+.-+|+.+++|..++..+... .+ .....+ -+|+.++.. ... ......+..|+..+++|..++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~~~-----~~lyv~GG~-~~~---~~~~~~v~~yd~~~~~W~~~~ 327 (534)
T PHA03098 265 NYITNYSPLSEINTIIDIHYVY--CF------GSVVLN-----NVIYFIGGM-NKN---NLSVNSVVSYDTKTKSWNKVP 327 (534)
T ss_pred eeeecchhhhhcccccCccccc--cc------eEEEEC-----CEEEEECCC-cCC---CCeeccEEEEeCCCCeeeECC
Confidence 3455788899998887554221 00 111111 134333211 111 012347889999999999988
Q ss_pred ccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeee-cCCCCCCCCCceeEEEecCeEEEEEec-CC--
Q 048178 200 SIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCTLESSLDVTLGIYDQSLSLLLLD-TV-- 275 (376)
Q Consensus 200 ~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~~~g~L~l~~~~-~~-- 275 (376)
.++... .....+.++|.+|.+++.........+..||+.+.+|+.+ ++|..... ...+.++|+++++++. ..
T Consensus 328 ~~~~~R-~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~---~~~~~~~~~iYv~GG~~~~~~ 403 (534)
T PHA03098 328 ELIYPR-KNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN---PCVVNVNNLIYVIGGISKNDE 403 (534)
T ss_pred CCCccc-ccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc---ceEEEECCEEEEECCcCCCCc
Confidence 765332 2335788999999998765322245688999999999988 56655433 4667889999999882 11
Q ss_pred -CCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEcC---------CeEEEEeCCCCcEEEEEEecc---eE
Q 048178 276 -DHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESNS---------SQLLLYEPGTGELRDFELECC---WF 342 (376)
Q Consensus 276 -~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~---------~~~~~yd~~t~~~~~v~~~~~---~~ 342 (376)
...+++|..+..+|..+..+ |...... .++..++.|++.++. ..+..||+++++|+++.-... ..
T Consensus 404 ~~~~v~~yd~~t~~W~~~~~~-p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~ 481 (534)
T PHA03098 404 LLKTVECFSLNTNKWSKGSPL-PISHYGG-CAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINA 481 (534)
T ss_pred ccceEEEEeCCCCeeeecCCC-CccccCc-eEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccc
Confidence 24566676666899998766 5543222 233447788877431 238999999999999853211 33
Q ss_pred EEEEeecCccccCC
Q 048178 343 SIYIYTESLITLKG 356 (376)
Q Consensus 343 ~~~~y~~sLv~~~~ 356 (376)
....+...+.-+++
T Consensus 482 ~~~~~~~~iyv~GG 495 (534)
T PHA03098 482 SLCIFNNKIYVVGG 495 (534)
T ss_pred eEEEECCEEEEEcC
Confidence 44555444444443
|
|
| >PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.5e-10 Score=71.33 Aligned_cols=43 Identities=28% Similarity=0.618 Sum_probs=36.6
Q ss_pred CCCCCHHHHHHHHhcCCccccceeeecchhhhhhcCChHHHHH
Q 048178 6 NDDSPEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFISM 48 (376)
Q Consensus 6 ~~~LP~Dll~eIl~rLp~~~l~r~r~VcK~W~~li~~p~F~~~ 48 (376)
+..||+|++.+||+.||++++.++++|||+|+.++.++.+-+.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~ 43 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRR 43 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhh
Confidence 4689999999999999999999999999999999988755443
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1e-06 Score=82.94 Aligned_cols=150 Identities=15% Similarity=0.116 Sum_probs=98.8
Q ss_pred ceEEEEEcCCCceEeccccCccccCCCCeEEECceEEEEeeecCCC---CccEEEEEECCCceEeee-cCCCCCCCC---
Q 048178 183 SLVTVYNLSTNSWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDN---DNYVILSFHMAEEKFQEI-QGPCTLESS--- 255 (376)
Q Consensus 183 ~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~---~~~~i~~fD~~~e~~~~i-~lP~~~~~~--- 255 (376)
..+++|+..++.|+.++.+|.........+.+++.||.+++..... .......||+++.+|..+ ++|......
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~ 268 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQE 268 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCC
Confidence 5799999999999998866532222334677899999998753211 233456678899999987 566543221
Q ss_pred --CceeEEEecCeEEEEEecCCC--------------------CEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcE
Q 048178 256 --LDVTLGIYDQSLSLLLLDTVD--------------------HCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAF 313 (376)
Q Consensus 256 --~~~~l~~~~g~L~l~~~~~~~--------------------~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i 313 (376)
.....++++|+|++++..... ..+++|..+...|..+..+ |.+.... .++.-+++|
T Consensus 269 ~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~l-p~~r~~~-~av~~~~~i 346 (376)
T PRK14131 269 GVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGEL-PQGLAYG-VSVSWNNGV 346 (376)
T ss_pred ccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcC-CCCccce-EEEEeCCEE
Confidence 112246789999999873110 1357788888899988777 6543233 344447888
Q ss_pred EEEEcC-------CeEEEEeCCCCcEEE
Q 048178 314 FVESNS-------SQLLLYEPGTGELRD 334 (376)
Q Consensus 314 ~~~~~~-------~~~~~yd~~t~~~~~ 334 (376)
|+.... ..+..|+++++++..
T Consensus 347 yv~GG~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 347 LLIGGETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred EEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence 887542 257888888776653
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.1e-07 Score=86.42 Aligned_cols=170 Identities=13% Similarity=0.156 Sum_probs=106.2
Q ss_pred ceEEEEEcCCCceEecccc---CccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeee-cC---CCCCCCC
Q 048178 183 SLVTVYNLSTNSWRNLKSI---DYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QG---PCTLESS 255 (376)
Q Consensus 183 ~~~~vyss~t~~W~~~~~~---~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~l---P~~~~~~ 255 (376)
..+++|+.++++|..++.. |.........+.+++.+|.++..........+.+||+.+.+|+.+ ++ |....
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~-- 270 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRS-- 270 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCcc--
Confidence 4699999999999986532 111111234678899999988754322234688999999999988 44 33322
Q ss_pred CceeEEEecCeEEEEEecC---CCCEEEEEEeCCCceeeEEEEC--CCCceeeeEEEeeCCcEEEEEc-----CCeEEEE
Q 048178 256 LDVTLGIYDQSLSLLLLDT---VDHCFKIWVMQKKNWIKQSSVG--PFIGIFQPLLFWKKGAFFVESN-----SSQLLLY 325 (376)
Q Consensus 256 ~~~~l~~~~g~L~l~~~~~---~~~~l~vW~l~~~~W~~~~~i~--~~~~~~~~~~~~~~g~i~~~~~-----~~~~~~y 325 (376)
...++..+++|++++... ....+.++.++..+|..+...+ +.......+++ -+++|++... ...+..|
T Consensus 271 -~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~-~~gkiyviGG~~g~~~~dv~~y 348 (470)
T PLN02193 271 -FHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV-VQGKVWVVYGFNGCEVDDVHYY 348 (470)
T ss_pred -ceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE-ECCcEEEEECCCCCccCceEEE
Confidence 245677899999998832 1234566666668998765421 11111222232 3677877643 2459999
Q ss_pred eCCCCcEEEEEEecc------eEEEEEeecCccccCC
Q 048178 326 EPGTGELRDFELECC------WFSIYIYTESLITLKG 356 (376)
Q Consensus 326 d~~t~~~~~v~~~~~------~~~~~~y~~sLv~~~~ 356 (376)
|+++++|+++...+. ...+..+...|.-+++
T Consensus 349 D~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG 385 (470)
T PLN02193 349 DPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGG 385 (470)
T ss_pred ECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECC
Confidence 999999999864321 3444555555544443
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=6e-07 Score=84.54 Aligned_cols=237 Identities=12% Similarity=0.127 Sum_probs=132.2
Q ss_pred eeeecceEEEeec--CCeEEEEecC--ccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCC-C
Q 048178 105 KGLYCGIVFIEGL--NNRITLWNIA--TRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDS-S 179 (376)
Q Consensus 105 ~~s~~Gll~~~~~--~~~~~V~NP~--T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~-~ 179 (376)
.+..++-|.+..+ ...++++++. +++|..+|+++....... .....+ + +|..++......... .
T Consensus 34 ~~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~------~~v~~~---~--~IYV~GG~~~~~~~~~~ 102 (376)
T PRK14131 34 GAIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQA------VAAFID---G--KLYVFGGIGKTNSEGSP 102 (376)
T ss_pred EEEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccc------eEEEEC---C--EEEEEcCCCCCCCCCce
Confidence 3445666655433 3456777765 578999997653221111 111111 1 333332110000000 0
Q ss_pred CCcceEEEEEcCCCceEeccccCcccc-CCCCeEE-ECceEEEEeeecCCC-----------------------------
Q 048178 180 CPFSLVTVYNLSTNSWRNLKSIDYTMR-LSSERTY-FDGAFYWLLKLENDN----------------------------- 228 (376)
Q Consensus 180 ~~~~~~~vyss~t~~W~~~~~~~~~~~-~~~~~v~-~~G~lywl~~~~~~~----------------------------- 228 (376)
.....++.|+..+++|+.++... ... ....++. .+|.||.+++.....
T Consensus 103 ~~~~~v~~YD~~~n~W~~~~~~~-p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~ 181 (376)
T PRK14131 103 QVFDDVYKYDPKTNSWQKLDTRS-PVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKK 181 (376)
T ss_pred eEcccEEEEeCCCCEEEeCCCCC-CCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCC
Confidence 11357999999999999987421 111 1122344 799999998753100
Q ss_pred -----CccEEEEEECCCceEeee-cCCCCCCCCCceeEEEecCeEEEEEec--CCCCEEEEEE--eC--CCceeeEEEEC
Q 048178 229 -----DNYVILSFHMAEEKFQEI-QGPCTLESSLDVTLGIYDQSLSLLLLD--TVDHCFKIWV--MQ--KKNWIKQSSVG 296 (376)
Q Consensus 229 -----~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~~~g~L~l~~~~--~~~~~l~vW~--l~--~~~W~~~~~i~ 296 (376)
....+..||+.+++|..+ ++|.... ....++..+++|++++.. ......++|. ++ ..+|.++..+
T Consensus 182 ~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~--~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~- 258 (376)
T PRK14131 182 PEDYFFNKEVLSYDPSTNQWKNAGESPFLGT--AGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDL- 258 (376)
T ss_pred hhhcCcCceEEEEECCCCeeeECCcCCCCCC--CcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCC-
Confidence 024699999999999988 5664221 124667789999999983 2234455664 32 2789998877
Q ss_pred CCCce-------eeeEEEeeCCcEEEEEcCC-----------------------eEEEEeCCCCcEEEEEEecc---eEE
Q 048178 297 PFIGI-------FQPLLFWKKGAFFVESNSS-----------------------QLLLYEPGTGELRDFELECC---WFS 343 (376)
Q Consensus 297 ~~~~~-------~~~~~~~~~g~i~~~~~~~-----------------------~~~~yd~~t~~~~~v~~~~~---~~~ 343 (376)
|.... ....++.-+++|++..... .+-.||+++++|+++.-... ...
T Consensus 259 p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~~~ 338 (376)
T PRK14131 259 PPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAYGV 338 (376)
T ss_pred CCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccceE
Confidence 54311 1111233477888774311 23479999999998853222 333
Q ss_pred EEEeecCccccCC
Q 048178 344 IYIYTESLITLKG 356 (376)
Q Consensus 344 ~~~y~~sLv~~~~ 356 (376)
+......+.-+++
T Consensus 339 av~~~~~iyv~GG 351 (376)
T PRK14131 339 SVSWNNGVLLIGG 351 (376)
T ss_pred EEEeCCEEEEEcC
Confidence 4444444443333
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.4e-07 Score=82.84 Aligned_cols=151 Identities=10% Similarity=0.156 Sum_probs=98.2
Q ss_pred ceEEEEEcCCCceEeccccCc-ccc--CCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeeec-C-----CCCCC
Q 048178 183 SLVTVYNLSTNSWRNLKSIDY-TMR--LSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQ-G-----PCTLE 253 (376)
Q Consensus 183 ~~~~vyss~t~~W~~~~~~~~-~~~--~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~-l-----P~~~~ 253 (376)
..+++|+..+++|+.++.+.. ... .....+.+++.||.+++.........+.+||+++.+|+.++ + |....
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~ 129 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEART 129 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCce
Confidence 479999999999998764421 111 12346788999999987543222346899999999999873 3 32222
Q ss_pred CCCceeEEEecCeEEEEEecCCC---------CEEEEEEeCCCceeeEEEEC--CCCceeeeEEEeeCCcEEEEEc----
Q 048178 254 SSLDVTLGIYDQSLSLLLLDTVD---------HCFKIWVMQKKNWIKQSSVG--PFIGIFQPLLFWKKGAFFVESN---- 318 (376)
Q Consensus 254 ~~~~~~l~~~~g~L~l~~~~~~~---------~~l~vW~l~~~~W~~~~~i~--~~~~~~~~~~~~~~g~i~~~~~---- 318 (376)
....++.+++|++++..... ..++++..+..+|..+..+. +.......+++ -+++|++...
T Consensus 130 ---~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~ 205 (341)
T PLN02153 130 ---FHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATS 205 (341)
T ss_pred ---eeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccccc
Confidence 24567889999999883211 24556666668899875542 11111122232 3677776521
Q ss_pred ----------CCeEEEEeCCCCcEEEEEE
Q 048178 319 ----------SSQLLLYEPGTGELRDFEL 337 (376)
Q Consensus 319 ----------~~~~~~yd~~t~~~~~v~~ 337 (376)
...+..||+++++|+++..
T Consensus 206 ~~~gG~~~~~~~~v~~yd~~~~~W~~~~~ 234 (341)
T PLN02153 206 ILPGGKSDYESNAVQFFDPASGKWTEVET 234 (341)
T ss_pred cccCCccceecCceEEEEcCCCcEEeccc
Confidence 1358999999999999864
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.4e-06 Score=78.61 Aligned_cols=134 Identities=13% Similarity=0.134 Sum_probs=87.8
Q ss_pred ceEEEEEcCCCceEeccccCccccCCCCeEEECceEEEEeeecCCC-CccEEEEE--ECCCceEeee-cCCCCCCC-C--
Q 048178 183 SLVTVYNLSTNSWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDN-DNYVILSF--HMAEEKFQEI-QGPCTLES-S-- 255 (376)
Q Consensus 183 ~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~~i~~f--D~~~e~~~~i-~lP~~~~~-~-- 255 (376)
..+++|++.+++|+.++.+|.........+.++|+||.+++..... ....+..| |.++.+|..+ ++|..... .
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~ 247 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEG 247 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCcccc
Confidence 5799999999999999877532222334678899999998754211 11234444 5567799887 56643211 0
Q ss_pred -CceeEEEecCeEEEEEecCC--------------------CCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEE
Q 048178 256 -LDVTLGIYDQSLSLLLLDTV--------------------DHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFF 314 (376)
Q Consensus 256 -~~~~l~~~~g~L~l~~~~~~--------------------~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~ 314 (376)
.....++++|+|++++.... ...+++|..+..+|..+..+ |...... .++.-++.|+
T Consensus 248 ~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~l-p~~~~~~-~~~~~~~~iy 325 (346)
T TIGR03547 248 LAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKL-PQGLAYG-VSVSWNNGVL 325 (346)
T ss_pred ccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCC-CCCceee-EEEEcCCEEE
Confidence 12336778999999987310 02578999988999999887 6653322 2334478888
Q ss_pred EEEc
Q 048178 315 VESN 318 (376)
Q Consensus 315 ~~~~ 318 (376)
+...
T Consensus 326 v~GG 329 (346)
T TIGR03547 326 LIGG 329 (346)
T ss_pred EEec
Confidence 8754
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.6e-09 Score=66.71 Aligned_cols=45 Identities=38% Similarity=0.629 Sum_probs=38.1
Q ss_pred CCCCCHHHHHHHHhcCCccccceeeecchhhhhhcCChHHHHHHh
Q 048178 6 NDDSPEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFISMHL 50 (376)
Q Consensus 6 ~~~LP~Dll~eIl~rLp~~~l~r~r~VcK~W~~li~~p~F~~~~~ 50 (376)
...||+|++.+||.+|+++++.+++.|||+|++++.++.+...+.
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~ 47 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKII 47 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHh
Confidence 357999999999999999999999999999999999999876653
|
This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B. |
| >smart00256 FBOX A Receptor for Ubiquitination Targets | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.2e-09 Score=65.17 Aligned_cols=39 Identities=46% Similarity=0.810 Sum_probs=36.9
Q ss_pred CCHHHHHHHHhcCCccccceeeecchhhhhhcCChHHHH
Q 048178 9 SPEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFIS 47 (376)
Q Consensus 9 LP~Dll~eIl~rLp~~~l~r~r~VcK~W~~li~~p~F~~ 47 (376)
||+|++.+||.+|+++++.++++|||+|+.++.++.|.+
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999988754
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.7e-06 Score=77.55 Aligned_cols=180 Identities=12% Similarity=0.079 Sum_probs=107.9
Q ss_pred CeEEEEecCccce----eecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCc
Q 048178 119 NRITLWNIATRES----VTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNS 194 (376)
Q Consensus 119 ~~~~V~NP~T~~~----~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~ 194 (376)
..++.+|+.+++| ..+|++|...... .+..++ + +|..++... .. .....+++|++++++
T Consensus 88 ~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~-------~~~~~~---~--~iYv~GG~~-~~----~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 88 SSVYRITLDESKEELICETIGNLPFTFENG-------SACYKD---G--TLYVGGGNR-NG----KPSNKSYLFNLETQE 150 (323)
T ss_pred eeEEEEEEcCCceeeeeeEcCCCCcCccCc-------eEEEEC---C--EEEEEeCcC-CC----ccCceEEEEcCCCCC
Confidence 4678899999987 6778776543211 111222 1 444443211 11 224689999999999
Q ss_pred eEeccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeeec-CCCCCCC---CCceeEEEecCeEEEE
Q 048178 195 WRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQ-GPCTLES---SLDVTLGIYDQSLSLL 270 (376)
Q Consensus 195 W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~-lP~~~~~---~~~~~l~~~~g~L~l~ 270 (376)
|+.++.+|.........+.++|.+|.+++..... ...+.+||+++++|+.++ ++..... .....++..+++|+++
T Consensus 151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~-~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~ 229 (323)
T TIGR03548 151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIA-YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCI 229 (323)
T ss_pred eeECCCCCCCCCCcceEEEECCEEEEEcCCCCcc-ccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEE
Confidence 9998866532222334568999999988754221 234789999999999884 3211111 0122344557889998
Q ss_pred EecCC-----------------------------------CCEEEEEEeCCCceeeEEEECCC-CceeeeEEEeeCCcEE
Q 048178 271 LLDTV-----------------------------------DHCFKIWVMQKKNWIKQSSVGPF-IGIFQPLLFWKKGAFF 314 (376)
Q Consensus 271 ~~~~~-----------------------------------~~~l~vW~l~~~~W~~~~~i~~~-~~~~~~~~~~~~g~i~ 314 (376)
+.... ...++++..+..+|..+..+ |. ......++ .-++.|+
T Consensus 230 GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~-p~~~r~~~~~~-~~~~~iy 307 (323)
T TIGR03548 230 GGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNS-PFFARCGAALL-LTGNNIF 307 (323)
T ss_pred CCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccc-cccccCchheE-EECCEEE
Confidence 87321 13577777777889998766 42 22222233 3367788
Q ss_pred EEEc
Q 048178 315 VESN 318 (376)
Q Consensus 315 ~~~~ 318 (376)
+...
T Consensus 308 v~GG 311 (323)
T TIGR03548 308 SING 311 (323)
T ss_pred EEec
Confidence 7754
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00013 Score=66.38 Aligned_cols=211 Identities=9% Similarity=0.079 Sum_probs=124.1
Q ss_pred CCeEEEEecCccceeecC--CCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCC--CCCCcceEEEEEcCCC
Q 048178 118 NNRITLWNIATRESVTLP--KYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRD--SSCPFSLVTVYNLSTN 193 (376)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP--~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~--~~~~~~~~~vyss~t~ 193 (376)
.+.+|.+|--+.+|+.+- .+|.++..+ .....++. ++.+......+.. .-..-....+|++.++
T Consensus 97 YndLy~Yn~k~~eWkk~~spn~P~pRssh--------q~va~~s~----~l~~fGGEfaSPnq~qF~HYkD~W~fd~~tr 164 (521)
T KOG1230|consen 97 YNDLYSYNTKKNEWKKVVSPNAPPPRSSH--------QAVAVPSN----ILWLFGGEFASPNQEQFHHYKDLWLFDLKTR 164 (521)
T ss_pred eeeeeEEeccccceeEeccCCCcCCCccc--------eeEEeccC----eEEEeccccCCcchhhhhhhhheeeeeeccc
Confidence 356899999999999864 333322221 11112222 2222111111100 0011246788999999
Q ss_pred ceEeccccCcccc-CCCCeEEECceEEEEeeecCCC----CccEEEEEECCCceEeeecCCCCCCC-CCceeEEEe-cCe
Q 048178 194 SWRNLKSIDYTMR-LSSERTYFDGAFYWLLKLENDN----DNYVILSFHMAEEKFQEIQGPCTLES-SLDVTLGIY-DQS 266 (376)
Q Consensus 194 ~W~~~~~~~~~~~-~~~~~v~~~G~lywl~~~~~~~----~~~~i~~fD~~~e~~~~i~lP~~~~~-~~~~~l~~~-~g~ 266 (376)
.|..+...-.+.+ .....|...-.|.-+++..+.. ...-+.+||+.+=+|+.+..+..... ...+++.+. .|.
T Consensus 165 kweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~ 244 (521)
T KOG1230|consen 165 KWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGG 244 (521)
T ss_pred hheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCc
Confidence 9999874322222 2223555555555555443322 23358999999999999965443222 134677777 888
Q ss_pred EEEEEec----------CCCCEEEEEEeCC-------CceeeEEEEC--CCCceeeeEEEeeCCc-EEEEE--c------
Q 048178 267 LSLLLLD----------TVDHCFKIWVMQK-------KNWIKQSSVG--PFIGIFQPLLFWKKGA-FFVES--N------ 318 (376)
Q Consensus 267 L~l~~~~----------~~~~~l~vW~l~~-------~~W~~~~~i~--~~~~~~~~~~~~~~g~-i~~~~--~------ 318 (376)
+++.+.. .+..+-++|.|+. -.|.++...+ |.+...-.++++++++ ++|-. +
T Consensus 245 i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeE 324 (521)
T KOG1230|consen 245 IVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEE 324 (521)
T ss_pred EEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccch
Confidence 8888772 3445779999977 3588876554 3333345577787766 44431 1
Q ss_pred ------CCeEEEEeCCCCcEEEEEEecc
Q 048178 319 ------SSQLLLYEPGTGELRDFELECC 340 (376)
Q Consensus 319 ------~~~~~~yd~~t~~~~~v~~~~~ 340 (376)
.+.|+.||+..++|...++++.
T Consensus 325 sl~g~F~NDLy~fdlt~nrW~~~qlq~~ 352 (521)
T KOG1230|consen 325 SLSGEFFNDLYFFDLTRNRWSEGQLQGK 352 (521)
T ss_pred hhhhhhhhhhhheecccchhhHhhhccC
Confidence 1249999999999998887764
|
|
| >KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00021 Score=61.39 Aligned_cols=211 Identities=12% Similarity=0.119 Sum_probs=120.6
Q ss_pred CCeEEEEecCccceeecCCCCCCC--CCccccccceEEEeeeCCCCCeEEEEEEEE-E--ecCCCCCCCcceEEEEEcCC
Q 048178 118 NNRITLWNIATRESVTLPKYRAII--PQYTRVFGTKIGFGLDPKTKDYKVVLILTL-W--DEKRDSSCPFSLVTVYNLST 192 (376)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP~~~~~~--~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~-~--~~~~~~~~~~~~~~vyss~t 192 (376)
.-.+.|.|-.+-+|..+|+--... ...+. ..-|- .-...||.+... + .........+....-|+.++
T Consensus 43 piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp------~VPyq--RYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t 114 (392)
T KOG4693|consen 43 PIDVHVLNAENYRWTKMPPGITKATIESPYP------AVPYQ--RYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPET 114 (392)
T ss_pred cceeEEeeccceeEEecCcccccccccCCCC------ccchh--hcCceEEEEcceEEEEcCccCcccccceeeeecccc
Confidence 446799999999999999842211 11110 00000 001223322110 0 01111113467888899999
Q ss_pred CceEeccc---cCccccCCCCeEEECceEEEEeeecCCC--CccEEEEEECCCceEeeec---CCCCCCCCCceeEEEec
Q 048178 193 NSWRNLKS---IDYTMRLSSERTYFDGAFYWLLKLENDN--DNYVILSFHMAEEKFQEIQ---GPCTLESSLDVTLGIYD 264 (376)
Q Consensus 193 ~~W~~~~~---~~~~~~~~~~~v~~~G~lywl~~~~~~~--~~~~i~~fD~~~e~~~~i~---lP~~~~~~~~~~l~~~~ 264 (376)
+.|+..+. .|. .....++++.+..+|-+++..+.. ...-+.++|+++.+|+.+. -|+.-.+ -....+++
T Consensus 115 ~~W~~p~v~G~vPg-aRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRD--FH~a~~~~ 191 (392)
T KOG4693|consen 115 NVWKKPEVEGFVPG-ARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRD--FHTASVID 191 (392)
T ss_pred ccccccceeeecCC-ccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhh--hhhhhhcc
Confidence 99997652 222 113345778888899887654322 3446899999999999983 3444322 12345567
Q ss_pred CeEEEEEecCCC------------CEEEEEEeCCCceeeEEEEC--CCCceeeeEEEeeCCcEEEEEc--------CCeE
Q 048178 265 QSLSLLLLDTVD------------HCFKIWVMQKKNWIKQSSVG--PFIGIFQPLLFWKKGAFFVESN--------SSQL 322 (376)
Q Consensus 265 g~L~l~~~~~~~------------~~l~vW~l~~~~W~~~~~i~--~~~~~~~~~~~~~~g~i~~~~~--------~~~~ 322 (376)
+..++++.+.+. .++.+..+..+.|.+-..-. |...-.. ..+.=+|++++... -..+
T Consensus 192 ~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSH-S~fvYng~~Y~FGGYng~ln~HfndL 270 (392)
T KOG4693|consen 192 GMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSH-STFVYNGKMYMFGGYNGTLNVHFNDL 270 (392)
T ss_pred ceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCccccc-ceEEEcceEEEecccchhhhhhhcce
Confidence 778888773111 23444444448888753221 1111122 22233788887643 2359
Q ss_pred EEEeCCCCcEEEEEEecc
Q 048178 323 LLYEPGTGELRDFELECC 340 (376)
Q Consensus 323 ~~yd~~t~~~~~v~~~~~ 340 (376)
+.||++|..|+.|...|+
T Consensus 271 y~FdP~t~~W~~I~~~Gk 288 (392)
T KOG4693|consen 271 YCFDPKTSMWSVISVRGK 288 (392)
T ss_pred eecccccchheeeeccCC
Confidence 999999999999988775
|
|
| >KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00025 Score=60.87 Aligned_cols=134 Identities=13% Similarity=0.173 Sum_probs=89.4
Q ss_pred cceEEEEEcCCCceEeccc--cCccccCCCCeEEECceEEEEeeecCCC---------CccEEEEEECCCceEeee----
Q 048178 182 FSLVTVYNLSTNSWRNLKS--IDYTMRLSSERTYFDGAFYWLLKLENDN---------DNYVILSFHMAEEKFQEI---- 246 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~--~~~~~~~~~~~v~~~G~lywl~~~~~~~---------~~~~i~~fD~~~e~~~~i---- 246 (376)
...+++++..|-.|+.+.- .|........++.++|.+|-+++..+.. ....|++||++++.|...
T Consensus 156 S~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~ 235 (392)
T KOG4693|consen 156 SQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENT 235 (392)
T ss_pred hccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCC
Confidence 4577888889999998752 2222222335788889999998765432 245799999999999765
Q ss_pred cCCCCCCCCCceeEEEecCeEEEEEecC---CCCEEEEEEeCC--CceeeEEEECCCCce-eeeEEEeeCCcEEEEEc
Q 048178 247 QGPCTLESSLDVTLGIYDQSLSLLLLDT---VDHCFKIWVMQK--KNWIKQSSVGPFIGI-FQPLLFWKKGAFFVESN 318 (376)
Q Consensus 247 ~lP~~~~~~~~~~l~~~~g~L~l~~~~~---~~~~l~vW~l~~--~~W~~~~~i~~~~~~-~~~~~~~~~g~i~~~~~ 318 (376)
..|.... .....+++|++++++... ....-++|..+. .-|.++..-+-.+.- .+-.++..++++++...
T Consensus 236 ~~P~GRR---SHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGG 310 (392)
T KOG4693|consen 236 MKPGGRR---SHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGG 310 (392)
T ss_pred cCCCccc---ccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecC
Confidence 2333332 257889999999999831 123448899888 779988654422222 33345555788777644
|
|
| >KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.002 Score=58.84 Aligned_cols=154 Identities=12% Similarity=0.133 Sum_probs=99.9
Q ss_pred ceEEEEEcCCCceEeccccCccccC-CCCeEEE-CceEEEEeeecCCCC------ccEEEEEECCCceEeeecCCCCCCC
Q 048178 183 SLVTVYNLSTNSWRNLKSIDYTMRL-SSERTYF-DGAFYWLLKLENDND------NYVILSFHMAEEKFQEIQGPCTLES 254 (376)
Q Consensus 183 ~~~~vyss~t~~W~~~~~~~~~~~~-~~~~v~~-~G~lywl~~~~~~~~------~~~i~~fD~~~e~~~~i~lP~~~~~ 254 (376)
.....|+.++++|+.+.++..+.+. ...+|.+ .|.+|.+++...+.+ ..-+-.||+.+.+|..+.++.....
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~ 177 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSP 177 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCC
Confidence 4678899999999998865444442 2234444 466665555443321 2247899999999999988765544
Q ss_pred CCceeEEEecCeEEEEEe-cCCCC------EEEEEEeCCCceeeEEEEC--CCCceeeeEEEeeCCcEEEEEc-------
Q 048178 255 SLDVTLGIYDQSLSLLLL-DTVDH------CFKIWVMQKKNWIKQSSVG--PFIGIFQPLLFWKKGAFFVESN------- 318 (376)
Q Consensus 255 ~~~~~l~~~~g~L~l~~~-~~~~~------~l~vW~l~~~~W~~~~~i~--~~~~~~~~~~~~~~g~i~~~~~------- 318 (376)
.....++.++..|.+++. ++... .+.+..|+...|.++..-+ |-+.-.+-+.+...|.|++...
T Consensus 178 RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~k 257 (521)
T KOG1230|consen 178 RSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVK 257 (521)
T ss_pred CccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhh
Confidence 445789999999999988 32111 3344445558899987533 3332344456676788877632
Q ss_pred --------CCeEEEEeCCC-----CcEEEEE
Q 048178 319 --------SSQLLLYEPGT-----GELRDFE 336 (376)
Q Consensus 319 --------~~~~~~yd~~t-----~~~~~v~ 336 (376)
...++..++++ -+|.++.
T Consensus 258 K~~dKG~~hsDmf~L~p~~~~~dKw~W~kvk 288 (521)
T KOG1230|consen 258 KDVDKGTRHSDMFLLKPEDGREDKWVWTKVK 288 (521)
T ss_pred hhhhcCceeeeeeeecCCcCCCcceeEeecc
Confidence 12388999998 3455553
|
|
| >KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0045 Score=60.18 Aligned_cols=207 Identities=11% Similarity=0.038 Sum_probs=120.9
Q ss_pred eEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceEecc
Q 048178 120 RITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRNLK 199 (376)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~ 199 (376)
.++++|--+..|................. .+..+ + +++.++. .... . .....+..|+..|+.|+.+.
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~--~~~~~------~-~l~lfGG-~~~~-~--~~~~~l~~~d~~t~~W~~l~ 155 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHS--LSAVG------D-KLYLFGG-TDKK-Y--RNLNELHSLDLSTRTWSLLS 155 (482)
T ss_pred eeEEeecCCcccccccccCCCCCccccee--EEEEC------C-eEEEEcc-ccCC-C--CChhheEeccCCCCcEEEec
Confidence 48999999988887654433221111100 01111 2 3333321 1111 1 23569999999999999876
Q ss_pred ccCc-ccc-CCCCeEEECceEEEEeeecCCC-CccEEEEEECCCceEeeecCCCCCCCC-CceeEEEecCeEEEEEecC-
Q 048178 200 SIDY-TMR-LSSERTYFDGAFYWLLKLENDN-DNYVILSFHMAEEKFQEIQGPCTLESS-LDVTLGIYDQSLSLLLLDT- 274 (376)
Q Consensus 200 ~~~~-~~~-~~~~~v~~~G~lywl~~~~~~~-~~~~i~~fD~~~e~~~~i~lP~~~~~~-~~~~l~~~~g~L~l~~~~~- 274 (376)
.... +.+ .....+..+.++|.+++.+... ....+.+||+++.+|..+......... ....+++.+++++++....
T Consensus 156 ~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~ 235 (482)
T KOG0379|consen 156 PTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDD 235 (482)
T ss_pred CcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEecccc
Confidence 4332 111 3334666777788777655332 356799999999999988432222221 2256788899999988832
Q ss_pred CC-CEEEEEEeCC--CceeeEEEEC--CCCceeeeEEEeeCCcEEEEEc-------CCeEEEEeCCCCcEEEEEEec
Q 048178 275 VD-HCFKIWVMQK--KNWIKQSSVG--PFIGIFQPLLFWKKGAFFVESN-------SSQLLLYEPGTGELRDFELEC 339 (376)
Q Consensus 275 ~~-~~l~vW~l~~--~~W~~~~~i~--~~~~~~~~~~~~~~g~i~~~~~-------~~~~~~yd~~t~~~~~v~~~~ 339 (376)
.. .-=++|.++- .+|.++...+ |-..+.....+..+.-+++... -+.++.||.+++.|.++...+
T Consensus 236 ~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 236 GDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred CCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCcccccccccccccccccccceeeeeccc
Confidence 22 2337888877 7788554332 3333445444332222334322 234889999999999986554
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.21 E-value=9.9e-05 Score=64.73 Aligned_cols=42 Identities=31% Similarity=0.589 Sum_probs=37.9
Q ss_pred CCCCCCHHHHHHHHhcCCccccceeeecchhhhhhcCChHHH
Q 048178 5 GNDDSPEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFI 46 (376)
Q Consensus 5 ~~~~LP~Dll~eIl~rLp~~~l~r~r~VcK~W~~li~~p~F~ 46 (376)
.+..||||+++.||+.|+.|+|.+...|||||+++.++...-
T Consensus 97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW 138 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLW 138 (419)
T ss_pred CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccce
Confidence 368999999999999999999999999999999998776543
|
|
| >KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.026 Score=54.91 Aligned_cols=152 Identities=8% Similarity=0.079 Sum_probs=98.6
Q ss_pred eEEEEEcCCCceEeccccC-cccc-CCCCeEEECceEEEEeeecCCC-CccEEEEEECCCceEeeec----CCCCCCCCC
Q 048178 184 LVTVYNLSTNSWRNLKSID-YTMR-LSSERTYFDGAFYWLLKLENDN-DNYVILSFHMAEEKFQEIQ----GPCTLESSL 256 (376)
Q Consensus 184 ~~~vyss~t~~W~~~~~~~-~~~~-~~~~~v~~~G~lywl~~~~~~~-~~~~i~~fD~~~e~~~~i~----lP~~~~~~~ 256 (376)
.+.+++..+..|......- ...+ .....+.++..||.+++..... ....+.+||+.+.+|..+. .|+....
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~-- 166 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAG-- 166 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCccc--
Confidence 5888888888897654211 1112 3345778899999988766321 2357999999999998873 2433332
Q ss_pred ceeEEEecCeEEEEEecCC-C-CEEEEEEeCC--CceeeEEEECCCC--ceeeeEEEeeCCcEEEEE-cC------CeEE
Q 048178 257 DVTLGIYDQSLSLLLLDTV-D-HCFKIWVMQK--KNWIKQSSVGPFI--GIFQPLLFWKKGAFFVES-NS------SQLL 323 (376)
Q Consensus 257 ~~~l~~~~g~L~l~~~~~~-~-~~l~vW~l~~--~~W~~~~~i~~~~--~~~~~~~~~~~g~i~~~~-~~------~~~~ 323 (376)
..+++.+.+|++.+.... . ..-++|+++- ..|.++.+.++.+ .....+.+. ++.+++.. .. .-+.
T Consensus 167 -Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~-~~~~~v~gG~~~~~~~l~D~~ 244 (482)
T KOG0379|consen 167 -HSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVV-GNKLLVFGGGDDGDVYLNDVH 244 (482)
T ss_pred -ceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEE-CCeEEEEeccccCCceecceE
Confidence 466777778999888321 2 4557777666 7799998886332 234444444 45544432 22 2399
Q ss_pred EEeCCCCcEEEEEEec
Q 048178 324 LYEPGTGELRDFELEC 339 (376)
Q Consensus 324 ~yd~~t~~~~~v~~~~ 339 (376)
.+|+.+.+|+++...+
T Consensus 245 ~ldl~~~~W~~~~~~g 260 (482)
T KOG0379|consen 245 ILDLSTWEWKLLPTGG 260 (482)
T ss_pred eeecccceeeeccccC
Confidence 9999999999765444
|
|
| >PF13964 Kelch_6: Kelch motif | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0089 Score=38.20 Aligned_cols=42 Identities=10% Similarity=0.207 Sum_probs=33.7
Q ss_pred CCeEEECceEEEEeeecC-CCCccEEEEEECCCceEeee-cCCC
Q 048178 209 SERTYFDGAFYWLLKLEN-DNDNYVILSFHMAEEKFQEI-QGPC 250 (376)
Q Consensus 209 ~~~v~~~G~lywl~~~~~-~~~~~~i~~fD~~~e~~~~i-~lP~ 250 (376)
.++|.++|.||.+++... ......+..||+++++|+.+ ++|.
T Consensus 5 ~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 5 HSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred CEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCC
Confidence 357899999999998765 23356899999999999998 5553
|
|
| >KOG2997 consensus F-box protein FBX9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0015 Score=57.63 Aligned_cols=45 Identities=20% Similarity=0.533 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHHhcCC-----ccccceeeecchhhhhhcCChHHHHHHhh
Q 048178 7 DDSPEDIMIEILSRLP-----VKSLIRLRCVCKSWYALIKNPNFISMHLK 51 (376)
Q Consensus 7 ~~LP~Dll~eIl~rLp-----~~~l~r~r~VcK~W~~li~~p~F~~~~~~ 51 (376)
..||||+|.+||.++= ..+|.++.+|||.|+-..++|+|-+.-+.
T Consensus 108 ~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~ 157 (366)
T KOG2997|consen 108 SVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACL 157 (366)
T ss_pred hhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHH
Confidence 6899999999998765 49999999999999999999999876654
|
|
| >PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.51 Score=41.60 Aligned_cols=121 Identities=11% Similarity=0.237 Sum_probs=81.7
Q ss_pred CCCeEEECceEEEEeeecCCCCccEEEEEECCCceEe-eecCCCCCCCC---------CceeEEEecCeEEEEEecC-CC
Q 048178 208 SSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQ-EIQGPCTLESS---------LDVTLGIYDQSLSLLLLDT-VD 276 (376)
Q Consensus 208 ~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~-~i~lP~~~~~~---------~~~~l~~~~g~L~l~~~~~-~~ 276 (376)
++..|+.||.+|+-... ...|+.||+.+++.. ...||...... ....+++-+..|-++.... ..
T Consensus 71 GtG~vVYngslYY~~~~-----s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~ 145 (250)
T PF02191_consen 71 GTGHVVYNGSLYYNKYN-----SRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNN 145 (250)
T ss_pred cCCeEEECCcEEEEecC-----CceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCC
Confidence 45678999999998764 458999999999988 77888765431 1256777777799988832 23
Q ss_pred CEEEEEEeCC------CceeeEEEECCCCceeeeEEEeeCCcEEEEEc-----CCeEEEEeCCCCcEEEEEEe
Q 048178 277 HCFKIWVMQK------KNWIKQSSVGPFIGIFQPLLFWKKGAFFVESN-----SSQLLLYEPGTGELRDFELE 338 (376)
Q Consensus 277 ~~l~vW~l~~------~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~-----~~~~~~yd~~t~~~~~v~~~ 338 (376)
.++.|-.++. ..|.-- + +.....- +|.-+|.++.... ..-.++||+.+++-+.+.+.
T Consensus 146 g~ivvskld~~tL~v~~tw~T~--~-~k~~~~n--aFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~ 213 (250)
T PF02191_consen 146 GNIVVSKLDPETLSVEQTWNTS--Y-PKRSAGN--AFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIP 213 (250)
T ss_pred CcEEEEeeCcccCceEEEEEec--c-Cchhhcc--eeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceeee
Confidence 4688888887 456532 2 2222222 3333577776633 23478999999988877654
|
Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding |
| >smart00284 OLF Olfactomedin-like domains | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.89 Score=39.93 Aligned_cols=121 Identities=15% Similarity=0.220 Sum_probs=79.3
Q ss_pred CCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeee-cCCCCCCC---------CCceeEEEecCeEEEEEe-cCCC
Q 048178 208 SSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCTLES---------SLDVTLGIYDQSLSLLLL-DTVD 276 (376)
Q Consensus 208 ~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~---------~~~~~l~~~~g~L~l~~~-~~~~ 276 (376)
+...|+.||++|+-... ...|+-||+++++.... .||..... .....+++-+..|-++.. ....
T Consensus 76 GtG~VVYngslYY~~~~-----s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~ 150 (255)
T smart00284 76 GTGVVVYNGSLYFNKFN-----SHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNA 150 (255)
T ss_pred cccEEEECceEEEEecC-----CccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCC
Confidence 44689999999996544 34799999999999654 57753211 123667887888988888 3335
Q ss_pred CEEEEEEeCC------CceeeEEEECCCCceeeeEEEeeCCcEEEEEc-----CCeEEEEeCCCCcEEEEEEe
Q 048178 277 HCFKIWVMQK------KNWIKQSSVGPFIGIFQPLLFWKKGAFFVESN-----SSQLLLYEPGTGELRDFELE 338 (376)
Q Consensus 277 ~~l~vW~l~~------~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~-----~~~~~~yd~~t~~~~~v~~~ 338 (376)
.+|.|-.|+. ..|.-- + +..... -+|.-+|.++.... ..-.++||+.|++-+.+.+.
T Consensus 151 g~ivvSkLnp~tL~ve~tW~T~--~-~k~sa~--naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~ 218 (255)
T smart00284 151 GKIVISKLNPATLTIENTWITT--Y-NKRSAS--NAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIP 218 (255)
T ss_pred CCEEEEeeCcccceEEEEEEcC--C-Cccccc--ccEEEeeEEEEEccCCCCCcEEEEEEECCCCccceeeee
Confidence 7888888887 455542 2 222221 13333577776632 23488999999887766553
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.0077 Score=53.78 Aligned_cols=44 Identities=27% Similarity=0.411 Sum_probs=39.1
Q ss_pred CCCC----HHHHHHHHhcCCccccceeeecchhhhhhcCChHHHHHHh
Q 048178 7 DDSP----EDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFISMHL 50 (376)
Q Consensus 7 ~~LP----~Dll~eIl~rLp~~~l~r~r~VcK~W~~li~~p~F~~~~~ 50 (376)
..|| +++.+.||+.|...+|..+..|||+|+.+++++-.-++..
T Consensus 76 ~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLi 123 (499)
T KOG0281|consen 76 TALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLI 123 (499)
T ss_pred HhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence 5689 9999999999999999999999999999999887665543
|
|
| >PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.045 Score=34.22 Aligned_cols=40 Identities=8% Similarity=0.204 Sum_probs=32.8
Q ss_pred CeEEECceEEEEeeecC-CCCccEEEEEECCCceEeee-cCC
Q 048178 210 ERTYFDGAFYWLLKLEN-DNDNYVILSFHMAEEKFQEI-QGP 249 (376)
Q Consensus 210 ~~v~~~G~lywl~~~~~-~~~~~~i~~fD~~~e~~~~i-~lP 249 (376)
.++.++|.+|.+++... ......+..||+.+++|..+ ++|
T Consensus 6 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 6 AAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred EEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 47899999999998765 33466899999999999988 554
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A .... |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.5 Score=41.48 Aligned_cols=132 Identities=17% Similarity=0.132 Sum_probs=83.9
Q ss_pred CCCCccceeeeeecceEEEeec-CCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEec
Q 048178 96 TQEPVLGSFKGLYCGIVFIEGL-NNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDE 174 (376)
Q Consensus 96 p~~~~~~~~~~s~~Gll~~~~~-~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~ 174 (376)
|+..-..-+++.-+|=|-...- .+.+.-.||.++.--++|.+...... . -....|+... +++..
T Consensus 186 PqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~g-s------Rriwsdpig~----~witt---- 250 (353)
T COG4257 186 PQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAG-S------RRIWSDPIGR----AWITT---- 250 (353)
T ss_pred CCCCCCcceEECCCCcEEEEeccccceEEcccccCCcceecCCCccccc-c------cccccCccCc----EEEec----
Confidence 4443334677777888766643 56678889999987778877542211 1 1244444332 22221
Q ss_pred CCCCCCCcceEEEEEcCCCceEeccccCccccCCCCeEEECce-EEEEeeecCCCCccEEEEEECCCceEeeecCCCCCC
Q 048178 175 KRDSSCPFSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYFDGA-FYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLE 253 (376)
Q Consensus 175 ~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~ 253 (376)
...-.+.-|+..+.+|..-+ +|..- ......+++.. .-|+..-+ ..+|..||.++++|+++++|....
T Consensus 251 -----wg~g~l~rfdPs~~sW~eyp-LPgs~-arpys~rVD~~grVW~sea~----agai~rfdpeta~ftv~p~pr~n~ 319 (353)
T COG4257 251 -----WGTGSLHRFDPSVTSWIEYP-LPGSK-ARPYSMRVDRHGRVWLSEAD----AGAIGRFDPETARFTVLPIPRPNS 319 (353)
T ss_pred -----cCCceeeEeCcccccceeee-CCCCC-CCcceeeeccCCcEEeeccc----cCceeecCcccceEEEecCCCCCC
Confidence 33668889999999999875 32222 22345666543 56776554 558999999999999998886543
|
|
| >PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.15 Score=32.26 Aligned_cols=39 Identities=13% Similarity=0.280 Sum_probs=30.9
Q ss_pred CeEEECceEEEEeee---cCCCCccEEEEEECCCceEeeecC
Q 048178 210 ERTYFDGAFYWLLKL---ENDNDNYVILSFHMAEEKFQEIQG 248 (376)
Q Consensus 210 ~~v~~~G~lywl~~~---~~~~~~~~i~~fD~~~e~~~~i~l 248 (376)
.++.++++||.+++. ........+..||+++.+|+.++.
T Consensus 6 s~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 6 SAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred EEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 578999999999887 222246678999999999998843
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding |
| >TIGR01640 F_box_assoc_1 F-box protein interaction domain | Back alignment and domain information |
|---|
Probab=93.41 E-value=3.3 Score=35.84 Aligned_cols=117 Identities=8% Similarity=0.100 Sum_probs=70.1
Q ss_pred EECceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCC--CCC-ceeEEEe--cCe--EEEEEec---CCCCEEEEE
Q 048178 213 YFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLE--SSL-DVTLGIY--DQS--LSLLLLD---TVDHCFKIW 282 (376)
Q Consensus 213 ~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~--~~~-~~~l~~~--~g~--L~l~~~~---~~~~~l~vW 282 (376)
.|||-+ ++... ..+...|+.|.++..+|.|+... ... ...++.- .+. +..+... .....++|+
T Consensus 3 sCnGLl-c~~~~------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vy 75 (230)
T TIGR01640 3 PCDGLI-CFSYG------KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVY 75 (230)
T ss_pred ccceEE-EEecC------CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEE
Confidence 478888 44432 37999999999999997665421 111 1222221 222 2222221 124688999
Q ss_pred EeCCCceeeEEEECCCCce-eeeEEEeeCCcEEEEEc-C----C-eEEEEeCCCCcEEE-EEEe
Q 048178 283 VMQKKNWIKQSSVGPFIGI-FQPLLFWKKGAFFVESN-S----S-QLLLYEPGTGELRD-FELE 338 (376)
Q Consensus 283 ~l~~~~W~~~~~i~~~~~~-~~~~~~~~~g~i~~~~~-~----~-~~~~yd~~t~~~~~-v~~~ 338 (376)
.++.++|..+... +.... ... ++.-+|.++.... . . .++.||+++.+++. +...
T Consensus 76 s~~~~~Wr~~~~~-~~~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P 137 (230)
T TIGR01640 76 TLGSNSWRTIECS-PPHHPLKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLP 137 (230)
T ss_pred EeCCCCccccccC-CCCccccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecC
Confidence 9999999998643 22111 222 5555788775432 1 1 69999999999995 6543
|
This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. |
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.02 E-value=10 Score=37.56 Aligned_cols=282 Identities=12% Similarity=0.058 Sum_probs=133.0
Q ss_pred CCCCCHHHHHHHHhcCCccccceeeecchhhhhhcCChHHHHHHhhcCCC-CcEEEEeeeccCccCC---CCCceeEE--
Q 048178 6 NDDSPEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFISMHLKNDVN-TRLIVIYAKEDNTEEH---SHPKEYFC-- 79 (376)
Q Consensus 6 ~~~LP~Dll~eIl~rLp~~~l~r~r~VcK~W~~li~~p~F~~~~~~~~~~-~~~l~~~~~~~~~~~~---~~~~~~~~-- 79 (376)
...||.++...||..|+.+++.++++||+.|+.++.+.....+....... .+--.-..... ... ......+.
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ks~~~~~ 185 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRLPPKCEKGLPL--KSGFKGRPWKSFYRRR 185 (537)
T ss_pred hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcccCCcccCccccc--ccccccchhhhhhhhh
Confidence 57899999999999999999999999999999999876655533222211 00000000000 000 00000000
Q ss_pred --ecCCCCccccc-cccCCCCCCccceeee-eecceEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEe
Q 048178 80 --LFPDETLEDLS-LQDLSTQEPVLGSFKG-LYCGIVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFG 155 (376)
Q Consensus 80 --~~~~~~~~~~~-~~~l~p~~~~~~~~~~-s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g 155 (376)
........... ...+-+.. ....+.. =.+|.+........+.+|+..+++...-+..... .. .-++.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~--g~------V~~l~ 256 (537)
T KOG0274|consen 186 FRLSKNWRKLFRRGYKVLLGTD-DHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHF--GG------VWGLA 256 (537)
T ss_pred hhccccccccccccceeecccC-cchhhhheeecCeEEecCCCceeEEeecccceEEEeeccCCC--CC------ceeEE
Confidence 00000000000 00000100 0000101 1155665555667778999999998775433211 11 12444
Q ss_pred eeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEE
Q 048178 156 LDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVI 233 (376)
Q Consensus 156 ~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i 233 (376)
+.. .+.|++--. ....+.|-+..++.=.. .+....+.+.+ .+..+-..+. ....|
T Consensus 257 ~~~--~~~~lvsgS-----------~D~t~rvWd~~sg~C~~------~l~gh~stv~~~~~~~~~~~sgs----~D~tV 313 (537)
T KOG0274|consen 257 FPS--GGDKLVSGS-----------TDKTERVWDCSTGECTH------SLQGHTSSVRCLTIDPFLLVSGS----RDNTV 313 (537)
T ss_pred Eec--CCCEEEEEe-----------cCCcEEeEecCCCcEEE------EecCCCceEEEEEccCceEeecc----CCceE
Confidence 442 344444432 13455554444442111 11111122211 2222222211 25588
Q ss_pred EEEECCCceEeeecCCCCCCCCCceeEEEecCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCC-c
Q 048178 234 LSFHMAEEKFQEIQGPCTLESSLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKG-A 312 (376)
Q Consensus 234 ~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g-~ 312 (376)
.+.|+++...-.+.-= .. ....-+.+++.+.+.+.. +..+.||.... =.-++.+... ...+.++.-++ .
T Consensus 314 kVW~v~n~~~l~l~~~--h~--~~V~~v~~~~~~lvsgs~--d~~v~VW~~~~--~~cl~sl~gH--~~~V~sl~~~~~~ 383 (537)
T KOG0274|consen 314 KVWDVTNGACLNLLRG--HT--GPVNCVQLDEPLLVSGSY--DGTVKVWDPRT--GKCLKSLSGH--TGRVYSLIVDSEN 383 (537)
T ss_pred EEEeccCcceEEEecc--cc--ccEEEEEecCCEEEEEec--CceEEEEEhhh--ceeeeeecCC--cceEEEEEecCcc
Confidence 9999997766544220 11 123344456666666654 45999998874 1222333111 12222222233 4
Q ss_pred EEEE-EcCCeEEEEeCCCCc
Q 048178 313 FFVE-SNSSQLLLYEPGTGE 331 (376)
Q Consensus 313 i~~~-~~~~~~~~yd~~t~~ 331 (376)
.++. ..++.+-++|++++.
T Consensus 384 ~~~Sgs~D~~IkvWdl~~~~ 403 (537)
T KOG0274|consen 384 RLLSGSLDTTIKVWDLRTKR 403 (537)
T ss_pred eEEeeeeccceEeecCCchh
Confidence 4544 345668889998883
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=92.91 E-value=5.2 Score=35.37 Aligned_cols=111 Identities=16% Similarity=0.173 Sum_probs=71.6
Q ss_pred ECceEEEEeeecCCCCccEEEEEECCCceEe-eecCCCCCCCCCceeEEEecCeEEEEEecCCCCEEEEEEeCCCceeeE
Q 048178 214 FDGAFYWLLKLENDNDNYVILSFHMAEEKFQ-EIQGPCTLESSLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQKKNWIKQ 292 (376)
Q Consensus 214 ~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~-~i~lP~~~~~~~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~ 292 (376)
-+|.+|=-++... ...|..+|+++++.. ..++|...-. --++..+++|+++... ....-+|..+. ..++
T Consensus 54 ~~g~LyESTG~yG---~S~l~~~d~~tg~~~~~~~l~~~~Fg---EGit~~~d~l~qLTWk--~~~~f~yd~~t--l~~~ 123 (264)
T PF05096_consen 54 DDGTLYESTGLYG---QSSLRKVDLETGKVLQSVPLPPRYFG---EGITILGDKLYQLTWK--EGTGFVYDPNT--LKKI 123 (264)
T ss_dssp ETTEEEEEECSTT---EEEEEEEETTTSSEEEEEE-TTT--E---EEEEEETTEEEEEESS--SSEEEEEETTT--TEEE
T ss_pred CCCEEEEeCCCCC---cEEEEEEECCCCcEEEEEECCccccc---eeEEEECCEEEEEEec--CCeEEEEcccc--ceEE
Confidence 4677776555442 668999999998774 5699886532 4688889999999996 66777777765 5566
Q ss_pred EEECCCCceeeeEEEeeCCc-EEEEEcCCeEEEEeCCCCcEE-EEEE
Q 048178 293 SSVGPFIGIFQPLLFWKKGA-FFVESNSSQLLLYEPGTGELR-DFEL 337 (376)
Q Consensus 293 ~~i~~~~~~~~~~~~~~~g~-i~~~~~~~~~~~yd~~t~~~~-~v~~ 337 (376)
.++ +++. .-=|++.+|+ +++.....++...|+++-+.. +|.+
T Consensus 124 ~~~-~y~~--EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V 167 (264)
T PF05096_consen 124 GTF-PYPG--EGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQV 167 (264)
T ss_dssp EEE-E-SS--S--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-
T ss_pred EEE-ecCC--cceEEEcCCCEEEEECCccceEEECCcccceEEEEEE
Confidence 565 4442 2234445555 777788889999999986443 4444
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF13964 Kelch_6: Kelch motif | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.31 Score=30.91 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=19.3
Q ss_pred CeEEEEecCccceeecCCCCCC
Q 048178 119 NRITLWNIATRESVTLPKYRAI 140 (376)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~ 140 (376)
+.+.++||.|++|..+|+++..
T Consensus 28 ~~v~~yd~~t~~W~~~~~mp~p 49 (50)
T PF13964_consen 28 NDVERYDPETNTWEQLPPMPTP 49 (50)
T ss_pred ccEEEEcCCCCcEEECCCCCCC
Confidence 5789999999999999988753
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=92.55 E-value=7.1 Score=34.57 Aligned_cols=217 Identities=14% Similarity=0.091 Sum_probs=114.8
Q ss_pred eecceEEEee-cCCeEEEEecCccceeecCCCCCCCCCcccc--------ccce-EEEeeeCCCCCeEEEEEEEEEecCC
Q 048178 107 LYCGIVFIEG-LNNRITLWNIATRESVTLPKYRAIIPQYTRV--------FGTK-IGFGLDPKTKDYKVVLILTLWDEKR 176 (376)
Q Consensus 107 s~~Gll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~--------~~~~-~~~g~d~~~~~ykvv~~~~~~~~~~ 176 (376)
+-+|-|-+.. ....+-=.||.|++....|......++.... .-.. ...-+|+++..++=.-+.. +.
T Consensus 70 apdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~---~~- 145 (353)
T COG4257 70 APDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPL---EH- 145 (353)
T ss_pred CCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeeccc---cc-
Confidence 4466554443 3444556799999999988766544321100 0000 0111233222222211110 11
Q ss_pred CCCCCcceEEEEEcCCCceEeccc-----c-C--c---ccc----CCCCeEE--ECceEEEEeeecCCCCccEEEEEECC
Q 048178 177 DSSCPFSLVTVYNLSTNSWRNLKS-----I-D--Y---TMR----LSSERTY--FDGAFYWLLKLENDNDNYVILSFHMA 239 (376)
Q Consensus 177 ~~~~~~~~~~vyss~t~~W~~~~~-----~-~--~---~~~----~~~~~v~--~~G~lywl~~~~~~~~~~~i~~fD~~ 239 (376)
...+.+-.||+-..+-|-.-+. + | . .++ ...++++ -||.+|+-...+ .+|.-.|..
T Consensus 146 --a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslag-----naiaridp~ 218 (353)
T COG4257 146 --ADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAG-----NAIARIDPF 218 (353)
T ss_pred --CCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccc-----cceEEcccc
Confidence 2447788899999999964331 0 0 0 011 2223444 479998765443 389999999
Q ss_pred CceEeeecCCCCCCCCCceeEEEecCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCc-eeeeEEEeeCCcEEEE-E
Q 048178 240 EEKFQEIQGPCTLESSLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIG-IFQPLLFWKKGAFFVE-S 317 (376)
Q Consensus 240 ~e~~~~i~lP~~~~~~~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~-~~~~~~~~~~g~i~~~-~ 317 (376)
+..-.+++.|.........--..--|.+-..... ...+..+.-...+|..-. + |-.. -...+.+...|.+++. .
T Consensus 219 ~~~aev~p~P~~~~~gsRriwsdpig~~wittwg--~g~l~rfdPs~~sW~eyp-L-Pgs~arpys~rVD~~grVW~sea 294 (353)
T COG4257 219 AGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWG--TGSLHRFDPSVTSWIEYP-L-PGSKARPYSMRVDRHGRVWLSEA 294 (353)
T ss_pred cCCcceecCCCcccccccccccCccCcEEEeccC--CceeeEeCcccccceeee-C-CCCCCCcceeeeccCCcEEeecc
Confidence 9888888888774332111111223333333322 233333333335565532 3 2211 1222444556778886 4
Q ss_pred cCCeEEEEeCCCCcEEEEEEe
Q 048178 318 NSSQLLLYEPGTGELRDFELE 338 (376)
Q Consensus 318 ~~~~~~~yd~~t~~~~~v~~~ 338 (376)
..+.+.-||++|.+++.+.+.
T Consensus 295 ~agai~rfdpeta~ftv~p~p 315 (353)
T COG4257 295 DAGAIGRFDPETARFTVLPIP 315 (353)
T ss_pred ccCceeecCcccceEEEecCC
Confidence 567799999999999998775
|
|
| >KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=92.52 E-value=4.3 Score=38.93 Aligned_cols=203 Identities=19% Similarity=0.221 Sum_probs=100.4
Q ss_pred CeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCC--ceE
Q 048178 119 NRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTN--SWR 196 (376)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~--~W~ 196 (376)
..+.|+|-+|+||.. |......+..- ..+||.+| .-||+.++.. .+ .....=+.|.+... .||
T Consensus 57 DELHvYNTatnqWf~-PavrGDiPpgc----AA~Gfvcd----GtrilvFGGM-vE-----YGkYsNdLYELQasRWeWk 121 (830)
T KOG4152|consen 57 DELHVYNTATNQWFA-PAVRGDIPPGC----AAFGFVCD----GTRILVFGGM-VE-----YGKYSNDLYELQASRWEWK 121 (830)
T ss_pred hhhhhhccccceeec-chhcCCCCCch----hhcceEec----CceEEEEccE-ee-----eccccchHHHhhhhhhhHh
Confidence 468999999999974 44333222221 12345544 2345554321 01 11344456666554 567
Q ss_pred ecccc-C-cccc----CCCCeEEECceEEEEeeecCCC-----------CccEEEEEECCCce--Eeee----cCCCCCC
Q 048178 197 NLKSI-D-YTMR----LSSERTYFDGAFYWLLKLENDN-----------DNYVILSFHMAEEK--FQEI----QGPCTLE 253 (376)
Q Consensus 197 ~~~~~-~-~~~~----~~~~~v~~~G~lywl~~~~~~~-----------~~~~i~~fD~~~e~--~~~i----~lP~~~~ 253 (376)
.+..- | ...+ ...+-+..+.+.|.+++-.+++ +..+++-+-..... |... .+|+...
T Consensus 122 rlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRE 201 (830)
T KOG4152|consen 122 RLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRE 201 (830)
T ss_pred hcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcc
Confidence 66532 1 1111 2334567778899887644322 23455555545543 3321 4565555
Q ss_pred CCCceeEEEecC-e--EEEEEecCCCCEEEEEEeCC--CceeeEEEEC--CCCceeeeEEEeeCCcEEEEE---------
Q 048178 254 SSLDVTLGIYDQ-S--LSLLLLDTVDHCFKIWVMQK--KNWIKQSSVG--PFIGIFQPLLFWKKGAFFVES--------- 317 (376)
Q Consensus 254 ~~~~~~l~~~~g-~--L~l~~~~~~~~~l~vW~l~~--~~W~~~~~i~--~~~~~~~~~~~~~~g~i~~~~--------- 317 (376)
.+...-.++-+. + +++.+.-.+.+-=++|.|+- ..|.+...-+ |++.-.+..... +++.|+..
T Consensus 202 SHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~I-GnKMyvfGGWVPl~~~~ 280 (830)
T KOG4152|consen 202 SHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTI-GNKMYVFGGWVPLVMDD 280 (830)
T ss_pred cceeEEEEeccCCcceEEEEcccccccccceeEEecceeecccccccCCCCCCcccccceee-cceeEEecceeeeeccc
Confidence 421111112222 2 44444322334448999987 8899864222 444221111111 12222210
Q ss_pred -----------cCCeEEEEeCCCCcEEEEEE
Q 048178 318 -----------NSSQLLLYEPGTGELRDFEL 337 (376)
Q Consensus 318 -----------~~~~~~~yd~~t~~~~~v~~ 337 (376)
....+-++|++|..|+.+-.
T Consensus 281 ~~~~~hekEWkCTssl~clNldt~~W~tl~~ 311 (830)
T KOG4152|consen 281 VKVATHEKEWKCTSSLACLNLDTMAWETLLM 311 (830)
T ss_pred cccccccceeeeccceeeeeecchheeeeee
Confidence 12348899999999998844
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=92.48 E-value=6.4 Score=33.89 Aligned_cols=188 Identities=15% Similarity=0.123 Sum_probs=95.4
Q ss_pred ecceEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEE
Q 048178 108 YCGIVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTV 187 (376)
Q Consensus 108 ~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~v 187 (376)
.+|.+++......++.+|+.|++.+.--..+...... ... .+=+|+... . ...+..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~--------~~~-----~~~~v~v~~-----~------~~~l~~ 90 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA--------PVV-----DGGRVYVGT-----S------DGSLYA 90 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG--------EEE-----ETTEEEEEE-----T------TSEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce--------eee-----ccccccccc-----c------eeeeEe
Confidence 6888888888888999999999865422222111000 011 011222221 0 226777
Q ss_pred EEcCCC--ceE-eccccCcccc-CCCCeEEECceEEEEeeecCCCCccEEEEEECCCceE--ee-ecCCCCCCC-----C
Q 048178 188 YNLSTN--SWR-NLKSIDYTMR-LSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKF--QE-IQGPCTLES-----S 255 (376)
Q Consensus 188 yss~t~--~W~-~~~~~~~~~~-~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~--~~-i~lP~~~~~-----~ 255 (376)
++..++ .|+ .....+.... ........++.+|.....+ .+.++|+++.+- .. +..|..... .
T Consensus 91 ~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~ 164 (238)
T PF13360_consen 91 LDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSG------KLVALDPKTGKLLWKYPVGEPRGSSPISSFSD 164 (238)
T ss_dssp EETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCS------EEEEEETTTTEEEEEEESSTT-SS--EEEETT
T ss_pred cccCCcceeeeeccccccccccccccCceEecCEEEEEeccC------cEEEEecCCCcEEEEeecCCCCCCcceeeecc
Confidence 776666 698 3432211111 1222333456666554333 899999987654 33 233332111 0
Q ss_pred CceeEEEecCeEEEEEecCCCCEEEEEEeCCCc--eeeEEEECCCCceeeeEEEeeCCcEEEEEcCCeEEEEeCCCCcEE
Q 048178 256 LDVTLGIYDQSLSLLLLDTVDHCFKIWVMQKKN--WIKQSSVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGELR 333 (376)
Q Consensus 256 ~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~~~--W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~yd~~t~~~~ 333 (376)
....+...+|.+++...+ ...+.+ .++.++ |... + ..... .....++.+++...+++++.+|++|++..
T Consensus 165 ~~~~~~~~~~~v~~~~~~--g~~~~~-d~~tg~~~w~~~--~---~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 165 INGSPVISDGRVYVSSGD--GRVVAV-DLATGEKLWSKP--I---SGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp EEEEEECCTTEEEEECCT--SSEEEE-ETTTTEEEEEEC--S---S-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred cccceEEECCEEEEEcCC--CeEEEE-ECCCCCEEEEec--C---CCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 112334446656665543 334555 555533 6222 3 11111 12233455666677899999999999865
Q ss_pred E
Q 048178 334 D 334 (376)
Q Consensus 334 ~ 334 (376)
.
T Consensus 236 W 236 (238)
T PF13360_consen 236 W 236 (238)
T ss_dssp E
T ss_pred e
Confidence 4
|
... |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=92.03 E-value=4.8 Score=35.23 Aligned_cols=165 Identities=17% Similarity=0.174 Sum_probs=93.4
Q ss_pred cceEEEEEcCCCceEeccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCC----ceEeeecCCCCCCCC-C
Q 048178 182 FSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAE----EKFQEIQGPCTLESS-L 256 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~----e~~~~i~lP~~~~~~-~ 256 (376)
.....+|+..|++++.+......+. ....+.-||.+.-.++...+ ...+-.|+..+ ..|. +.|...... +
T Consensus 45 ~a~s~~yD~~tn~~rpl~v~td~FC-Sgg~~L~dG~ll~tGG~~~G--~~~ir~~~p~~~~~~~~w~--e~~~~m~~~RW 119 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLTVQTDTFC-SGGAFLPDGRLLQTGGDNDG--NKAIRIFTPCTSDGTCDWT--ESPNDMQSGRW 119 (243)
T ss_pred eEEEEEEecCCCcEEeccCCCCCcc-cCcCCCCCCCEEEeCCCCcc--ccceEEEecCCCCCCCCce--ECcccccCCCc
Confidence 5567889999999998874322222 22345668887766555433 45677788654 3343 444333322 3
Q ss_pred ceeEEEe-cCeEEEEEecCCCCEEEEEEeCC-----CceeeEEEEC-C-CCceeeeEEEeeCCcEEEEEcCCeEEEEeCC
Q 048178 257 DVTLGIY-DQSLSLLLLDTVDHCFKIWVMQK-----KNWIKQSSVG-P-FIGIFQPLLFWKKGAFFVESNSSQLLLYEPG 328 (376)
Q Consensus 257 ~~~l~~~-~g~L~l~~~~~~~~~l~vW~l~~-----~~W~~~~~i~-~-~~~~~~~~~~~~~g~i~~~~~~~~~~~yd~~ 328 (376)
-.....+ +|++.+++.. .....+.|--.. ..|..+.... . ...++.-+.+..+|+|++..+.+ -..||.+
T Consensus 120 YpT~~~L~DG~vlIvGG~-~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~-s~i~d~~ 197 (243)
T PF07250_consen 120 YPTATTLPDGRVLIVGGS-NNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG-SIIYDYK 197 (243)
T ss_pred cccceECCCCCEEEEeCc-CCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC-cEEEeCC
Confidence 3444443 7888888883 255666665432 1222221110 0 11234455667799998876654 5778999
Q ss_pred CCcE-EEE-EEecceEEEEEeecCcccc
Q 048178 329 TGEL-RDF-ELECCWFSIYIYTESLITL 354 (376)
Q Consensus 329 t~~~-~~v-~~~~~~~~~~~y~~sLv~~ 354 (376)
++++ +.+ .+.+. ++.++...+-+-+
T Consensus 198 ~n~v~~~lP~lPg~-~R~YP~sgssvmL 224 (243)
T PF07250_consen 198 TNTVVRTLPDLPGG-PRNYPASGSSVML 224 (243)
T ss_pred CCeEEeeCCCCCCC-ceecCCCcceEEe
Confidence 9976 555 34443 4455555554433
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function | Back alignment and domain information |
|---|
Probab=91.70 E-value=3.8 Score=38.09 Aligned_cols=131 Identities=12% Similarity=0.104 Sum_probs=72.2
Q ss_pred ecceEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEE
Q 048178 108 YCGIVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTV 187 (376)
Q Consensus 108 ~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~v 187 (376)
.+.-|++.+......|+++.|+....+|.+........ .+.. .+. |..+.................|+
T Consensus 75 ~gskIv~~d~~~~t~vyDt~t~av~~~P~l~~pk~~pi-----sv~V-----G~~--LY~m~~~~~~~~~~~~~~~~FE~ 142 (342)
T PF07893_consen 75 HGSKIVAVDQSGRTLVYDTDTRAVATGPRLHSPKRCPI-----SVSV-----GDK--LYAMDRSPFPEPAGRPDFPCFEA 142 (342)
T ss_pred cCCeEEEEcCCCCeEEEECCCCeEeccCCCCCCCcceE-----EEEe-----CCe--EEEeeccCccccccCccceeEEE
Confidence 45555555444556999999999999998654332221 1122 122 44443211111000000014444
Q ss_pred E--E--------cCCCceEeccccCccccC-------CCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeee---c
Q 048178 188 Y--N--------LSTNSWRNLKSIDYTMRL-------SSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEI---Q 247 (376)
Q Consensus 188 y--s--------s~t~~W~~~~~~~~~~~~-------~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i---~ 247 (376)
+ . .++.+|+.++.+|..... ...+|+ +|.--|+...+. .....+||+++.+|+.. .
T Consensus 143 l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~---~~GTysfDt~~~~W~~~GdW~ 218 (342)
T PF07893_consen 143 LVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGR---RWGTYSFDTESHEWRKHGDWM 218 (342)
T ss_pred eccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEe-cCCeEEEEecCC---ceEEEEEEcCCcceeecccee
Confidence 4 3 223478888765533221 123555 888888865531 12699999999999987 7
Q ss_pred CCCCCCC
Q 048178 248 GPCTLES 254 (376)
Q Consensus 248 lP~~~~~ 254 (376)
||.....
T Consensus 219 LPF~G~a 225 (342)
T PF07893_consen 219 LPFHGQA 225 (342)
T ss_pred cCcCCcc
Confidence 8876543
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.33 E-value=5.1 Score=37.74 Aligned_cols=143 Identities=9% Similarity=0.186 Sum_probs=84.3
Q ss_pred cceEEEEEcCCCceEeccccCc-cccCCCCeEEECce-EEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCcee
Q 048178 182 FSLVTVYNLSTNSWRNLKSIDY-TMRLSSERTYFDGA-FYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVT 259 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~-~~~~~~~~v~~~G~-lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~ 259 (376)
...+.+|-.....=..+.++.. ..|......+-+|. .-+.+.. ..++.+||+++.+...+..|.......-..
T Consensus 234 d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r-----rky~ysyDle~ak~~k~~~~~g~e~~~~e~ 308 (514)
T KOG2055|consen 234 DGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGR-----RKYLYSYDLETAKVTKLKPPYGVEEKSMER 308 (514)
T ss_pred CCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEeccc-----ceEEEEeeccccccccccCCCCcccchhhe
Confidence 4567777766543334444321 22233344555776 4333333 568999999999999998887776321122
Q ss_pred EEEe-cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCc-EEEEEcCCeEEEEeCCCCcEEE
Q 048178 260 LGIY-DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGA-FFVESNSSQLLLYEPGTGELRD 334 (376)
Q Consensus 260 l~~~-~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~~~~~~~~~yd~~t~~~~~ 334 (376)
.-+. ++...++... ...|.+-..+.++|.--..| + ....-+.+..+|+ |+.+..++.++++|+++++...
T Consensus 309 FeVShd~~fia~~G~--~G~I~lLhakT~eli~s~Ki-e--G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~ 380 (514)
T KOG2055|consen 309 FEVSHDSNFIAIAGN--NGHIHLLHAKTKELITSFKI-E--GVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLH 380 (514)
T ss_pred eEecCCCCeEEEccc--CceEEeehhhhhhhhheeee-c--cEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEE
Confidence 2233 3332222222 45555555555777766665 2 2345566667777 5566778899999999996544
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=91.26 E-value=14 Score=35.20 Aligned_cols=146 Identities=11% Similarity=0.070 Sum_probs=80.8
Q ss_pred ceEEEEEcCCC-----ceEeccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCce---EeeecCCCCCCC
Q 048178 183 SLVTVYNLSTN-----SWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEK---FQEIQGPCTLES 254 (376)
Q Consensus 183 ~~~~vyss~t~-----~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~---~~~i~lP~~~~~ 254 (376)
..+.+.+..++ .|+.+..... ......-..++.+|.++..+. ....|++.|+++-. |..+-.|.....
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~~~--~~~~~v~~~~~~~yi~Tn~~a--~~~~l~~~~l~~~~~~~~~~~l~~~~~~~ 327 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPRED--GVEYYVDHHGDRLYILTNDDA--PNGRLVAVDLADPSPAEWWTVLIPEDEDV 327 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEESSS--S-EEEEEEETTEEEEEE-TT---TT-EEEEEETTSTSGGGEEEEEE--SSSE
T ss_pred CeEEEEeccccCCCcCCcEEEeCCCC--ceEEEEEccCCEEEEeeCCCC--CCcEEEEecccccccccceeEEcCCCCce
Confidence 56666666654 6777642111 011123345777887776332 26789999998754 654433333211
Q ss_pred CCceeEEEecCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEe--eC-CcEEEEEc----CCeEEEEeC
Q 048178 255 SLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFW--KK-GAFFVESN----SSQLLLYEP 327 (376)
Q Consensus 255 ~~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~--~~-g~i~~~~~----~~~~~~yd~ 327 (376)
.-..+...++.|.+...+.....+.|+.++ ..|.....- +.......++. .+ .+++|... ...++.||+
T Consensus 328 -~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~-~~~~~~~~~--~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~ 403 (414)
T PF02897_consen 328 -SLEDVSLFKDYLVLSYRENGSSRLRVYDLD-DGKESREIP--LPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDL 403 (414)
T ss_dssp -EEEEEEEETTEEEEEEEETTEEEEEEEETT--TEEEEEEE--SSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEET
T ss_pred -eEEEEEEECCEEEEEEEECCccEEEEEECC-CCcEEeeec--CCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence 113445567788887776556677777777 246655433 22223333332 22 34665532 467999999
Q ss_pred CCCcEEEEE
Q 048178 328 GTGELRDFE 336 (376)
Q Consensus 328 ~t~~~~~v~ 336 (376)
++++.+.+.
T Consensus 404 ~t~~~~~~k 412 (414)
T PF02897_consen 404 ATGELTLLK 412 (414)
T ss_dssp TTTCEEEEE
T ss_pred CCCCEEEEE
Confidence 999998875
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B | Back alignment and domain information |
|---|
Probab=90.58 E-value=0.43 Score=30.02 Aligned_cols=40 Identities=10% Similarity=0.207 Sum_probs=23.8
Q ss_pred CeEEE-CceEEEEeeecCC-CCccEEEEEECCCceEeee-cCC
Q 048178 210 ERTYF-DGAFYWLLKLEND-NDNYVILSFHMAEEKFQEI-QGP 249 (376)
Q Consensus 210 ~~v~~-~G~lywl~~~~~~-~~~~~i~~fD~~~e~~~~i-~lP 249 (376)
.++.+ ++.+|.+++.... .....+..||+++.+|+.+ ++|
T Consensus 6 ~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 6 SAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred EEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 35556 5888888776542 1244688999999999998 444
|
|
| >smart00612 Kelch Kelch domain | Back alignment and domain information |
|---|
Probab=90.37 E-value=0.91 Score=27.77 Aligned_cols=32 Identities=6% Similarity=0.130 Sum_probs=21.5
Q ss_pred ccEEEEEECCCceEeee-cCCCCCCCCCceeEEEec
Q 048178 230 NYVILSFHMAEEKFQEI-QGPCTLESSLDVTLGIYD 264 (376)
Q Consensus 230 ~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~~~ 264 (376)
...+..||+++.+|+.+ ++|..... ..++.++
T Consensus 14 ~~~v~~yd~~~~~W~~~~~~~~~r~~---~~~~~~~ 46 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPSMPTPRSG---HGVAVIN 46 (47)
T ss_pred eeeEEEECCCCCeEccCCCCCCcccc---ceEEEeC
Confidence 34688999999999887 55554433 3444444
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=90.12 E-value=12 Score=32.63 Aligned_cols=207 Identities=14% Similarity=0.064 Sum_probs=111.7
Q ss_pred ecceEEEee-cCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEE
Q 048178 108 YCGIVFIEG-LNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVT 186 (376)
Q Consensus 108 ~~Gll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 186 (376)
.+|-|+..+ ....++.++|.+++...+..+. ..++.++...+.+ +++. .....
T Consensus 10 ~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~------------~~G~~~~~~~g~l-~v~~-------------~~~~~ 63 (246)
T PF08450_consen 10 RDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG------------PNGMAFDRPDGRL-YVAD-------------SGGIA 63 (246)
T ss_dssp TTTEEEEEETTTTEEEEEETTTTEEEEEESSS------------EEEEEEECTTSEE-EEEE-------------TTCEE
T ss_pred CCCEEEEEEcCCCEEEEEECCCCeEEEEecCC------------CceEEEEccCCEE-EEEE-------------cCceE
Confidence 356666665 4678899999999876644332 1456666333222 2221 33556
Q ss_pred EEEcCCCceEeccccCccc-c--CCC-CeEEECceEEEEeeecCCC-Cc--cEEEEEECCCceEeeecCCCCCCCCCcee
Q 048178 187 VYNLSTNSWRNLKSIDYTM-R--LSS-ERTYFDGAFYWLLKLENDN-DN--YVILSFHMAEEKFQEIQGPCTLESSLDVT 259 (376)
Q Consensus 187 vyss~t~~W~~~~~~~~~~-~--~~~-~~v~~~G~lywl~~~~~~~-~~--~~i~~fD~~~e~~~~i~lP~~~~~~~~~~ 259 (376)
+++..++.++.+...+... . ..+ -.+--+|.+|.-....... .. ..+..+|.. .+...+.-. .. ...-
T Consensus 64 ~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~--~~--~pNG 138 (246)
T PF08450_consen 64 VVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG--LG--FPNG 138 (246)
T ss_dssp EEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE--ES--SEEE
T ss_pred EEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC--cc--cccc
Confidence 6698999888776542111 1 111 1344478877654433211 12 579999999 554443110 00 0123
Q ss_pred EEEe-cCe-EEEEEecCCCCEEEEEEeCC--CceeeEEEE-C-CCC-ceeeeEEEeeCCcEEEEE-cCCeEEEEeCCCCc
Q 048178 260 LGIY-DQS-LSLLLLDTVDHCFKIWVMQK--KNWIKQSSV-G-PFI-GIFQPLLFWKKGAFFVES-NSSQLLLYEPGTGE 331 (376)
Q Consensus 260 l~~~-~g~-L~l~~~~~~~~~l~vW~l~~--~~W~~~~~i-~-~~~-~~~~~~~~~~~g~i~~~~-~~~~~~~yd~~t~~ 331 (376)
++.. +|+ |++.... ...+..+.++. ..+.....+ + +.. ....=+++..+|.|++.. ..+++..||++.+.
T Consensus 139 i~~s~dg~~lyv~ds~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~ 216 (246)
T PF08450_consen 139 IAFSPDGKTLYVADSF--NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKL 216 (246)
T ss_dssp EEEETTSSEEEEEETT--TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCE
T ss_pred eEECCcchheeecccc--cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccE
Confidence 4433 555 5555543 55555555654 335543322 1 121 123335666688899875 57889999999888
Q ss_pred EEEEEEecceEEEEEe
Q 048178 332 LRDFELECCWFSIYIY 347 (376)
Q Consensus 332 ~~~v~~~~~~~~~~~y 347 (376)
++++......+.-+.|
T Consensus 217 ~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 217 LREIELPVPRPTNCAF 232 (246)
T ss_dssp EEEEE-SSSSEEEEEE
T ss_pred EEEEcCCCCCEEEEEE
Confidence 8888877434444444
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.77 E-value=15 Score=33.14 Aligned_cols=146 Identities=16% Similarity=0.152 Sum_probs=83.2
Q ss_pred CCCeEEECceEEEEeeecCCCCccEEEEEECCCceEee-ecCCCCCCCCCceeEEEecCeE---EEEEecCCCCEEEEEE
Q 048178 208 SSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQE-IQGPCTLESSLDVTLGIYDQSL---SLLLLDTVDHCFKIWV 283 (376)
Q Consensus 208 ~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~-i~lP~~~~~~~~~~l~~~~g~L---~l~~~~~~~~~l~vW~ 283 (376)
.-.+|.++|-.---+.. ...|-.||+.+..=.. +.-+.+. ....-..+.+ .++.. .++..+.||.
T Consensus 45 sitavAVs~~~~aSGss-----DetI~IYDm~k~~qlg~ll~Hags-----itaL~F~~~~S~shLlS~-sdDG~i~iw~ 113 (362)
T KOG0294|consen 45 SITALAVSGPYVASGSS-----DETIHIYDMRKRKQLGILLSHAGS-----ITALKFYPPLSKSHLLSG-SDDGHIIIWR 113 (362)
T ss_pred ceeEEEecceeEeccCC-----CCcEEEEeccchhhhcceeccccc-----eEEEEecCCcchhheeee-cCCCcEEEEE
Confidence 34578888865443333 3479999987654322 2222211 2222223322 34444 3478999999
Q ss_pred eCCCceeeEEEECCCCceeeeEEEeeCCcEEEE-EcCCeEEEEeCCCCcEEEEE-EecceEEEEEeecCccccCCCCCcc
Q 048178 284 MQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVE-SNSSQLLLYEPGTGELRDFE-LECCWFSIYIYTESLITLKGGESVF 361 (376)
Q Consensus 284 l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~-~~~~~~~~yd~~t~~~~~v~-~~~~~~~~~~y~~sLv~~~~~~~~~ 361 (376)
.+. |..+.++-+...-..-+++.+.|++=+. .++..+-.+|+-+++-..+. +.. . .++| ....+..
T Consensus 114 ~~~--W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~-~-------at~v--~w~~~Gd 181 (362)
T KOG0294|consen 114 VGS--WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN-K-------ATLV--SWSPQGD 181 (362)
T ss_pred cCC--eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC-c-------ceee--EEcCCCC
Confidence 876 9888887543322444677778887665 45666888888777666553 322 1 1122 2224555
Q ss_pred ccccee-eEeeeeecC
Q 048178 362 DFDIPW-HVLGVYQTE 376 (376)
Q Consensus 362 ~~~~~~-~~~~~~~~~ 376 (376)
.|-+.. -++++||+|
T Consensus 182 ~F~v~~~~~i~i~q~d 197 (362)
T KOG0294|consen 182 HFVVSGRNKIDIYQLD 197 (362)
T ss_pred EEEEEeccEEEEEecc
Confidence 566444 467777775
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=89.55 E-value=13 Score=32.03 Aligned_cols=136 Identities=13% Similarity=0.052 Sum_probs=74.6
Q ss_pred eEEEEEcCCC--ceEeccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEee-ecCCCCCCCCCceeE
Q 048178 184 LVTVYNLSTN--SWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQE-IQGPCTLESSLDVTL 260 (376)
Q Consensus 184 ~~~vyss~t~--~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~-i~lP~~~~~~~~~~l 260 (376)
.+..++..++ .|+.--.... .......+.-+|.+|.... ...+.++|..+.+..+ ..+|..... ..
T Consensus 4 ~l~~~d~~tG~~~W~~~~~~~~-~~~~~~~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~~~~~~~----~~ 72 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLGPGI-GGPVATAVPDGGRVYVASG------DGNLYALDAKTGKVLWRFDLPGPISG----AP 72 (238)
T ss_dssp EEEEEETTTTEEEEEEECSSSC-SSEEETEEEETTEEEEEET------TSEEEEEETTTSEEEEEEECSSCGGS----GE
T ss_pred EEEEEECCCCCEEEEEECCCCC-CCccceEEEeCCEEEEEcC------CCEEEEEECCCCCEEEEeeccccccc----ee
Confidence 5677888776 5886321100 0011124457888887643 4489999987765433 244444332 24
Q ss_pred EEecCeEEEEEecCCCCEEEEEEeCC--Cceee-EEEECCCCceeeeEEEeeCCcEEEEEcCCeEEEEeCCCCcEE
Q 048178 261 GIYDQSLSLLLLDTVDHCFKIWVMQK--KNWIK-QSSVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGELR 333 (376)
Q Consensus 261 ~~~~g~L~l~~~~~~~~~l~vW~l~~--~~W~~-~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~yd~~t~~~~ 333 (376)
...++.+++... ...+..+..++ ..|.. ...-++............++.+++....+.++.+|+++++..
T Consensus 73 ~~~~~~v~v~~~---~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 73 VVDGGRVYVGTS---DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLL 145 (238)
T ss_dssp EEETTEEEEEET---TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEE
T ss_pred eecccccccccc---eeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEE
Confidence 666777877764 23444444444 56884 433211121112222222455667777888999999998763
|
... |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=89.18 E-value=19 Score=33.46 Aligned_cols=124 Identities=12% Similarity=0.209 Sum_probs=75.7
Q ss_pred CceEEEEeeecCCCCccEEEEEECCCce--Ee---eecCCCCCCCCCceeEEEe-cCe-EEEEEecCCCCEEEEEEeCC-
Q 048178 215 DGAFYWLLKLENDNDNYVILSFHMAEEK--FQ---EIQGPCTLESSLDVTLGIY-DQS-LSLLLLDTVDHCFKIWVMQK- 286 (376)
Q Consensus 215 ~G~lywl~~~~~~~~~~~i~~fD~~~e~--~~---~i~lP~~~~~~~~~~l~~~-~g~-L~l~~~~~~~~~l~vW~l~~- 286 (376)
+|...|+...+ ...|..|++..+. .. .+.+|..... ..++.. +|+ ++++... ...+.++.++.
T Consensus 154 dg~~v~v~dlG----~D~v~~~~~~~~~~~l~~~~~~~~~~G~GP---Rh~~f~pdg~~~Yv~~e~--s~~v~v~~~~~~ 224 (345)
T PF10282_consen 154 DGRFVYVPDLG----ADRVYVYDIDDDTGKLTPVDSIKVPPGSGP---RHLAFSPDGKYAYVVNEL--SNTVSVFDYDPS 224 (345)
T ss_dssp TSSEEEEEETT----TTEEEEEEE-TTS-TEEEEEEEECSTTSSE---EEEEE-TTSSEEEEEETT--TTEEEEEEEETT
T ss_pred CCCEEEEEecC----CCEEEEEEEeCCCceEEEeeccccccCCCC---cEEEEcCCcCEEEEecCC--CCcEEEEeeccc
Confidence 47766676555 4578888877655 43 3466766554 455544 555 6666654 88999999983
Q ss_pred -CceeeEEEECCCCc------eeeeEEEeeCCcEE-EEE-cCCeEEEEeC--CCCcEEEEEEe---cceEEEEEe
Q 048178 287 -KNWIKQSSVGPFIG------IFQPLLFWKKGAFF-VES-NSSQLLLYEP--GTGELRDFELE---CCWFSIYIY 347 (376)
Q Consensus 287 -~~W~~~~~i~~~~~------~~~~~~~~~~g~i~-~~~-~~~~~~~yd~--~t~~~~~v~~~---~~~~~~~~y 347 (376)
+.+..+.++..++. ...-+.+.++|+.+ +.. ..+.+.+|++ ++++++.++.. |..|+.+..
T Consensus 225 ~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~ 299 (345)
T PF10282_consen 225 DGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAF 299 (345)
T ss_dssp TTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE
T ss_pred CCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEE
Confidence 77888777742211 13335667788855 443 3566888887 56788887543 225555555
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=88.78 E-value=0.87 Score=28.19 Aligned_cols=23 Identities=35% Similarity=0.657 Sum_probs=19.5
Q ss_pred CCcceEEEEEcCCCceEeccccC
Q 048178 180 CPFSLVTVYNLSTNSWRNLKSID 202 (376)
Q Consensus 180 ~~~~~~~vyss~t~~W~~~~~~~ 202 (376)
.....+++|+..+++|+.++.+|
T Consensus 25 ~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 25 QPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp SBEEEEEEEETTTTEEEEEEEES
T ss_pred ceeeeEEEEeCCCCEEEEcCCCC
Confidence 34679999999999999988664
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A .... |
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.39 E-value=24 Score=33.66 Aligned_cols=159 Identities=17% Similarity=0.155 Sum_probs=92.0
Q ss_pred cceEEEEEcCCCceEe-ccccCccccCCCCe--EEECceEEEEeeecCCCCccEEEEEECCCceE-eee---cCCCCCCC
Q 048178 182 FSLVTVYNLSTNSWRN-LKSIDYTMRLSSER--TYFDGAFYWLLKLENDNDNYVILSFHMAEEKF-QEI---QGPCTLES 254 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~-~~~~~~~~~~~~~~--v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~-~~i---~lP~~~~~ 254 (376)
..++++|++.+.+=+. +.. +....++ +..+|.+...+.. ...+-.||.++... +.+ ..|..
T Consensus 47 S~rvqly~~~~~~~~k~~sr----Fk~~v~s~~fR~DG~LlaaGD~-----sG~V~vfD~k~r~iLR~~~ah~apv~--- 114 (487)
T KOG0310|consen 47 SVRVQLYSSVTRSVRKTFSR----FKDVVYSVDFRSDGRLLAAGDE-----SGHVKVFDMKSRVILRQLYAHQAPVH--- 114 (487)
T ss_pred ccEEEEEecchhhhhhhHHh----hccceeEEEeecCCeEEEccCC-----cCcEEEeccccHHHHHHHhhccCcee---
Confidence 6799999999864322 221 1111233 3446999876654 34789999665221 111 11111
Q ss_pred CCceeEEEecCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEee-CCcEEEEE-cCCeEEEEeCCCCcE
Q 048178 255 SLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWK-KGAFFVES-NSSQLLLYEPGTGEL 332 (376)
Q Consensus 255 ~~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~-~g~i~~~~-~~~~~~~yd~~t~~~ 332 (376)
.......++.+++.+.+ +..+.+|.+.... + ...+.-...+.+..++.+ ++-|++.+ +++.+-.||.++..-
T Consensus 115 --~~~f~~~d~t~l~s~sD--d~v~k~~d~s~a~-v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~ 188 (487)
T KOG0310|consen 115 --VTKFSPQDNTMLVSGSD--DKVVKYWDLSTAY-V-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS 188 (487)
T ss_pred --EEEecccCCeEEEecCC--CceEEEEEcCCcE-E-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc
Confidence 12333345556666555 8999999999843 3 444533444555555555 44477774 588899999999985
Q ss_pred EEEEEecc-eEEEEEeec--CccccCCCC
Q 048178 333 RDFELECC-WFSIYIYTE--SLITLKGGE 358 (376)
Q Consensus 333 ~~v~~~~~-~~~~~~y~~--sLv~~~~~~ 358 (376)
+.+.+++. --..+.|.| |++-..+++
T Consensus 189 ~v~elnhg~pVe~vl~lpsgs~iasAgGn 217 (487)
T KOG0310|consen 189 RVVELNHGCPVESVLALPSGSLIASAGGN 217 (487)
T ss_pred eeEEecCCCceeeEEEcCCCCEEEEcCCC
Confidence 55567655 223334444 455444444
|
|
| >PF13415 Kelch_3: Galactose oxidase, central domain | Back alignment and domain information |
|---|
Probab=87.56 E-value=2 Score=26.93 Aligned_cols=39 Identities=10% Similarity=0.166 Sum_probs=25.8
Q ss_pred CceEEEEeeec--CCCCccEEEEEECCCceEeee-cCCCCCC
Q 048178 215 DGAFYWLLKLE--NDNDNYVILSFHMAEEKFQEI-QGPCTLE 253 (376)
Q Consensus 215 ~G~lywl~~~~--~~~~~~~i~~fD~~~e~~~~i-~lP~~~~ 253 (376)
++.+|.+++.. .......+.+||+.+.+|+.+ .+|+...
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~ 42 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRS 42 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCcc
Confidence 35666666554 122245689999999999998 5555443
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=87.55 E-value=26 Score=33.15 Aligned_cols=186 Identities=13% Similarity=0.113 Sum_probs=97.7
Q ss_pred eecceEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEE
Q 048178 107 LYCGIVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVT 186 (376)
Q Consensus 107 s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 186 (376)
..+|.|.+......++.+|+.|++.+.--..+..... ...+. + . +|+.. ...-.+.
T Consensus 118 v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~s-------sP~v~-~----~-~v~v~-----------~~~g~l~ 173 (394)
T PRK11138 118 VAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALS-------RPVVS-D----G-LVLVH-----------TSNGMLQ 173 (394)
T ss_pred EECCEEEEEcCCCEEEEEECCCCCCcccccCCCceec-------CCEEE-C----C-EEEEE-----------CCCCEEE
Confidence 3467777776677889999999884331111111000 00111 1 1 22221 1134677
Q ss_pred EEEcCCC--ceEeccccCc-cccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCce--Eee-ecCCCCCCC-----C
Q 048178 187 VYNLSTN--SWRNLKSIDY-TMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEK--FQE-IQGPCTLES-----S 255 (376)
Q Consensus 187 vyss~t~--~W~~~~~~~~-~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~--~~~-i~lP~~~~~-----~ 255 (376)
.++.+++ .|+.-...+. .......++..+|.+|+-..++ .+.++|.++.+ |+. +..|..... .
T Consensus 174 ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g------~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~ 247 (394)
T PRK11138 174 ALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNG------RVSAVLMEQGQLIWQQRISQPTGATEIDRLVD 247 (394)
T ss_pred EEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCC------EEEEEEccCChhhheeccccCCCccchhcccc
Confidence 7888776 4886432221 1112235667788888755433 78999988754 542 222322110 0
Q ss_pred CceeEEEecCeEEEEEecCCCCEEEEEEeCC--CceeeEEEECCCCceeeeEEEeeCCcEEEEEcCCeEEEEeCCCCcE
Q 048178 256 LDVTLGIYDQSLSLLLLDTVDHCFKIWVMQK--KNWIKQSSVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGEL 332 (376)
Q Consensus 256 ~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~yd~~t~~~ 332 (376)
....-++.+|.+++... ...+....++. ..|..... .. ..+ . ..++.||+...+++++.+|.++++.
T Consensus 248 ~~~sP~v~~~~vy~~~~---~g~l~ald~~tG~~~W~~~~~--~~---~~~-~-~~~~~vy~~~~~g~l~ald~~tG~~ 316 (394)
T PRK11138 248 VDTTPVVVGGVVYALAY---NGNLVALDLRSGQIVWKREYG--SV---NDF-A-VDGGRIYLVDQNDRVYALDTRGGVE 316 (394)
T ss_pred cCCCcEEECCEEEEEEc---CCeEEEEECCCCCEEEeecCC--Cc---cCc-E-EECCEEEEEcCCCeEEEEECCCCcE
Confidence 01223345777776654 23333333333 44765321 11 122 2 3367788888888999999998853
|
|
| >PLN02772 guanylate kinase | Back alignment and domain information |
|---|
Probab=87.04 E-value=4.2 Score=38.24 Aligned_cols=74 Identities=8% Similarity=0.085 Sum_probs=51.6
Q ss_pred CCeEEECceEEEEeeecCCC-CccEEEEEECCCceEeee----cCCCCCCCCCceeEEEe-cCeEEEEEecCCCCEEEEE
Q 048178 209 SERTYFDGAFYWLLKLENDN-DNYVILSFHMAEEKFQEI----QGPCTLESSLDVTLGIY-DQSLSLLLLDTVDHCFKIW 282 (376)
Q Consensus 209 ~~~v~~~G~lywl~~~~~~~-~~~~i~~fD~~~e~~~~i----~lP~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~l~vW 282 (376)
..++.+++++|.+++..+.. ....+.+||..+.+|..- ..|..... ...+++ +++|.++.- .....-+||
T Consensus 28 ~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~G---hSa~v~~~~rilv~~~-~~~~~~~~w 103 (398)
T PLN02772 28 ETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKG---YSAVVLNKDRILVIKK-GSAPDDSIW 103 (398)
T ss_pred ceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCc---ceEEEECCceEEEEeC-CCCCccceE
Confidence 46899999999998755432 356899999999999764 23433332 234444 677888886 345668999
Q ss_pred EeCC
Q 048178 283 VMQK 286 (376)
Q Consensus 283 ~l~~ 286 (376)
.|+-
T Consensus 104 ~l~~ 107 (398)
T PLN02772 104 FLEV 107 (398)
T ss_pred EEEc
Confidence 9875
|
|
| >PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa | Back alignment and domain information |
|---|
Probab=85.98 E-value=6.2 Score=30.79 Aligned_cols=68 Identities=13% Similarity=0.258 Sum_probs=49.3
Q ss_pred EEEEEECCCc--eEeeecCCCCCCCC-----------CceeEEEecCeEEEEEec--------CCCCEEEEEEeCC----
Q 048178 232 VILSFHMAEE--KFQEIQGPCTLESS-----------LDVTLGIYDQSLSLLLLD--------TVDHCFKIWVMQK---- 286 (376)
Q Consensus 232 ~i~~fD~~~e--~~~~i~lP~~~~~~-----------~~~~l~~~~g~L~l~~~~--------~~~~~l~vW~l~~---- 286 (376)
.|+..|+-.+ .++.|+||...... ....+++.+|+|-++... .....+.+|.|..
T Consensus 7 GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~~ 86 (131)
T PF07762_consen 7 GILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEGS 86 (131)
T ss_pred CEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCCC
Confidence 6888887755 66778888765321 225688899998888872 1356899999876
Q ss_pred -CceeeEEEECCCCc
Q 048178 287 -KNWIKQSSVGPFIG 300 (376)
Q Consensus 287 -~~W~~~~~i~~~~~ 300 (376)
.+|.+.+++ ....
T Consensus 87 ~~~W~~d~~v-~~~d 100 (131)
T PF07762_consen 87 SWEWKKDCEV-DLSD 100 (131)
T ss_pred CCCEEEeEEE-Ehhh
Confidence 779999988 4543
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=85.29 E-value=17 Score=33.43 Aligned_cols=117 Identities=16% Similarity=0.234 Sum_probs=69.1
Q ss_pred CeEEEC--ceEEEEeeecCCCCccEEEEEECCCceEeee---cCCCCC--CCCCc---eeEEEe---cCeEEEEEec---
Q 048178 210 ERTYFD--GAFYWLLKLENDNDNYVILSFHMAEEKFQEI---QGPCTL--ESSLD---VTLGIY---DQSLSLLLLD--- 273 (376)
Q Consensus 210 ~~v~~~--G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i---~lP~~~--~~~~~---~~l~~~---~g~L~l~~~~--- 273 (376)
.+++.+ |.+||+...+ .|...|++.+.-... .+-... ...+. .++..+ .|+||++...
T Consensus 188 ~~~~~~~~~~~~F~Sy~G------~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~ 261 (342)
T PF06433_consen 188 HPAYSRDGGRLYFVSYEG------NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGE 261 (342)
T ss_dssp --EEETTTTEEEEEBTTS------EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--T
T ss_pred ccceECCCCeEEEEecCC------EEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCC
Confidence 345443 5788888765 899999987764333 221111 11121 344443 5568876652
Q ss_pred --CCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCc-EEEE-E-cCCeEEEEeCCCCcEE
Q 048178 274 --TVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGA-FFVE-S-NSSQLLLYEPGTGELR 333 (376)
Q Consensus 274 --~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~-~-~~~~~~~yd~~t~~~~ 333 (376)
.....-+||+++-..=.++.++ +++.-...+++..+.+ +++. . .++.+.+||..|++..
T Consensus 262 gsHKdpgteVWv~D~~t~krv~Ri-~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 262 GSHKDPGTEVWVYDLKTHKRVARI-PLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLV 325 (342)
T ss_dssp T-TTS-EEEEEEEETTTTEEEEEE-EEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EE
T ss_pred CCccCCceEEEEEECCCCeEEEEE-eCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence 2345789999998666677788 6653344567777666 5543 3 4577999999998654
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >smart00612 Kelch Kelch domain | Back alignment and domain information |
|---|
Probab=85.05 E-value=1.2 Score=27.12 Aligned_cols=22 Identities=36% Similarity=0.600 Sum_probs=18.5
Q ss_pred cceEEEEEcCCCceEeccccCc
Q 048178 182 FSLVTVYNLSTNSWRNLKSIDY 203 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~ 203 (376)
...+++|+.++++|+.++.++.
T Consensus 14 ~~~v~~yd~~~~~W~~~~~~~~ 35 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPSMPT 35 (47)
T ss_pred eeeEEEECCCCCeEccCCCCCC
Confidence 4678999999999999886654
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.17 E-value=0.38 Score=44.80 Aligned_cols=39 Identities=26% Similarity=0.525 Sum_probs=35.1
Q ss_pred CCCCCHHHHHHHHhcCCccccceeeecchhhhhhcCChH
Q 048178 6 NDDSPEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPN 44 (376)
Q Consensus 6 ~~~LP~Dll~eIl~rLp~~~l~r~r~VcK~W~~li~~p~ 44 (376)
.-.||.+++..||+-|..+++.|++.+||.|+.+..+..
T Consensus 72 ~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~ 110 (483)
T KOG4341|consen 72 SRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGS 110 (483)
T ss_pred cccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence 467999999999999999999999999999998876543
|
|
| >COG3055 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=83.53 E-value=37 Score=31.33 Aligned_cols=133 Identities=14% Similarity=0.150 Sum_probs=76.8
Q ss_pred cceEEEEEcCCCceEeccccCccccCCCCeEEECceEEEEe-ee---cCCCCccEEEEEECCCceEeee-cCCCCCCCCC
Q 048178 182 FSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYFDGAFYWLL-KL---ENDNDNYVILSFHMAEEKFQEI-QGPCTLESSL 256 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~-~~---~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~ 256 (376)
...+-+|+..++.|+.....|. .+...+++...|..-++. .. +.........-|.-...+|..+ ++|+......
T Consensus 195 n~ev~sy~p~~n~W~~~G~~pf-~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~ 273 (381)
T COG3055 195 NKEVLSYDPSTNQWRNLGENPF-YGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNK 273 (381)
T ss_pred cccccccccccchhhhcCcCcc-cCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCc
Confidence 4578889999999999885543 222223444444433332 21 1111234455666678899887 7777665532
Q ss_pred cee----EEEecCeEEEEEe-c-------------------CCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCc
Q 048178 257 DVT----LGIYDQSLSLLLL-D-------------------TVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGA 312 (376)
Q Consensus 257 ~~~----l~~~~g~L~l~~~-~-------------------~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~ 312 (376)
... -+..+|.+-+... . ...-+-+||.+++++|..+..+ |.. +..-+.+.-++.
T Consensus 274 eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~g~Wk~~GeL-p~~-l~YG~s~~~nn~ 351 (381)
T COG3055 274 EGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDNGSWKIVGEL-PQG-LAYGVSLSYNNK 351 (381)
T ss_pred cccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcCCceeeeccc-CCC-ccceEEEecCCc
Confidence 222 2334444444443 1 1122568999999999999998 764 333344444666
Q ss_pred EEEEE
Q 048178 313 FFVES 317 (376)
Q Consensus 313 i~~~~ 317 (376)
+++..
T Consensus 352 vl~IG 356 (381)
T COG3055 352 VLLIG 356 (381)
T ss_pred EEEEc
Confidence 77664
|
|
| >KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures] | Back alignment and domain information |
|---|
Probab=83.31 E-value=25 Score=30.68 Aligned_cols=121 Identities=13% Similarity=0.241 Sum_probs=74.6
Q ss_pred CCCeEEECceEEEEeeecCCCCccEEEEEECCCceE-eeecCCCCCCCC---------CceeEEEecCeEEEEEe-cCCC
Q 048178 208 SSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKF-QEIQGPCTLESS---------LDVTLGIYDQSLSLLLL-DTVD 276 (376)
Q Consensus 208 ~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~-~~i~lP~~~~~~---------~~~~l~~~~g~L~l~~~-~~~~ 276 (376)
....|+.||++|+-... ...|+-||++++.- ....+|...... ...-+++-+..|.++.. ....
T Consensus 70 gTg~VVynGs~yynk~~-----t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~ 144 (249)
T KOG3545|consen 70 GTGHVVYNGSLYYNKAG-----TRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENA 144 (249)
T ss_pred ccceEEEcceEEeeccC-----CcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccC
Confidence 34589999999987754 34799999999654 444666554332 22567777777888877 3345
Q ss_pred CEEEEEEeCC------CceeeEEEECCCCceeeeEEEeeCCcEEEEEc----CCeE-EEEeCCCCcEEEEEEe
Q 048178 277 HCFKIWVMQK------KNWIKQSSVGPFIGIFQPLLFWKKGAFFVESN----SSQL-LLYEPGTGELRDFELE 338 (376)
Q Consensus 277 ~~l~vW~l~~------~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~----~~~~-~~yd~~t~~~~~v~~~ 338 (376)
..+.|-.|+. ..|.--..=.... =+|.-.|.++.... +..+ ++||..+++-+.+.+.
T Consensus 145 g~iv~skLdp~tl~~e~tW~T~~~k~~~~-----~aF~iCGvLY~v~S~~~~~~~i~yaydt~~~~~~~~~ip 212 (249)
T KOG3545|consen 145 GTIVLSKLDPETLEVERTWNTTLPKRSAG-----NAFMICGVLYVVHSYNCTHTQISYAYDTTTGTQERIDLP 212 (249)
T ss_pred CcEEeeccCHHHhheeeeeccccCCCCcC-----ceEEEeeeeEEEeccccCCceEEEEEEcCCCceeccccc
Confidence 6666777776 4563322110111 13333466665532 2223 7999999988777653
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=82.17 E-value=46 Score=31.45 Aligned_cols=105 Identities=10% Similarity=0.140 Sum_probs=60.9
Q ss_pred CCeEEECceEEEEeeecCCCCccEEEEEECCCc--eEeeecCCCCCCCCCceeEEEecCeEEEEEecCCCCEEEEEEeCC
Q 048178 209 SERTYFDGAFYWLLKLENDNDNYVILSFHMAEE--KFQEIQGPCTLESSLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQK 286 (376)
Q Consensus 209 ~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e--~~~~i~lP~~~~~~~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~ 286 (376)
..++..+|.+|.....+ .+.++|.++. .|+. +++.. ..++..+|.+++... ...+.....++
T Consensus 250 ~sP~v~~~~vy~~~~~g------~l~ald~~tG~~~W~~-~~~~~------~~~~~~~~~vy~~~~---~g~l~ald~~t 313 (394)
T PRK11138 250 TTPVVVGGVVYALAYNG------NLVALDLRSGQIVWKR-EYGSV------NDFAVDGGRIYLVDQ---NDRVYALDTRG 313 (394)
T ss_pred CCcEEECCEEEEEEcCC------eEEEEECCCCCEEEee-cCCCc------cCcEEECCEEEEEcC---CCeEEEEECCC
Confidence 35678899999866543 7999999875 4543 22111 123455666766654 23333333333
Q ss_pred --CceeeEEEECCCCceeeeEEEeeCCcEEEEEcCCeEEEEeCCCCcEE
Q 048178 287 --KNWIKQSSVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGELR 333 (376)
Q Consensus 287 --~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~yd~~t~~~~ 333 (376)
..|.... + .......|+. .+|.|++...++.++.+|.++++..
T Consensus 314 G~~~W~~~~-~-~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~ 358 (394)
T PRK11138 314 GVELWSQSD-L-LHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFV 358 (394)
T ss_pred CcEEEcccc-c-CCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 3464321 1 1111233432 3678888888888999999998754
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=81.40 E-value=47 Score=31.05 Aligned_cols=134 Identities=10% Similarity=0.141 Sum_probs=72.3
Q ss_pred ceEEEEEcCCC--ceEeccccCc-cccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCce--Eee-ecCCCCCCC--
Q 048178 183 SLVTVYNLSTN--SWRNLKSIDY-TMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEK--FQE-IQGPCTLES-- 254 (376)
Q Consensus 183 ~~~~vyss~t~--~W~~~~~~~~-~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~--~~~-i~lP~~~~~-- 254 (376)
-.+..++.+++ .|+.-...+. .......++..+|.+|.-... ..+.++|.++++ |+. +..|.....
T Consensus 155 g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~------g~v~ald~~tG~~~W~~~~~~~~g~~~~~ 228 (377)
T TIGR03300 155 GRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAG------GKLVALDLQTGQPLWEQRVALPKGRTELE 228 (377)
T ss_pred CeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCC------CEEEEEEccCCCEeeeeccccCCCCCchh
Confidence 45677777766 5875432221 111223467778877654332 379999987754 532 222322110
Q ss_pred ---CCceeEEEecCeEEEEEecCCCCEEEEEEeCC--CceeeEEEECCCCceeeeEEEeeCCcEEEEEcCCeEEEEeCCC
Q 048178 255 ---SLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQK--KNWIKQSSVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGT 329 (376)
Q Consensus 255 ---~~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~yd~~t 329 (376)
.........+|.+++... ...+..+.++. ..|... . .....|. ..++.||+...++.++.+|.++
T Consensus 229 ~~~~~~~~p~~~~~~vy~~~~---~g~l~a~d~~tG~~~W~~~--~---~~~~~p~--~~~~~vyv~~~~G~l~~~d~~t 298 (377)
T TIGR03300 229 RLVDVDGDPVVDGGQVYAVSY---QGRVAALDLRSGRVLWKRD--A---SSYQGPA--VDDNRLYVTDADGVVVALDRRS 298 (377)
T ss_pred hhhccCCccEEECCEEEEEEc---CCEEEEEECCCCcEEEeec--c---CCccCce--EeCCEEEEECCCCeEEEEECCC
Confidence 001123344666666554 34566666655 446554 1 1112232 2367788877788899999988
Q ss_pred CcE
Q 048178 330 GEL 332 (376)
Q Consensus 330 ~~~ 332 (376)
++.
T Consensus 299 G~~ 301 (377)
T TIGR03300 299 GSE 301 (377)
T ss_pred CcE
Confidence 753
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B | Back alignment and domain information |
|---|
Probab=81.28 E-value=2.7 Score=26.27 Aligned_cols=21 Identities=24% Similarity=0.637 Sum_probs=13.7
Q ss_pred cceEEEEEcCCCceEeccccC
Q 048178 182 FSLVTVYNLSTNSWRNLKSID 202 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~ 202 (376)
...+.+|+..+++|+.++.+|
T Consensus 28 ~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 28 LNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp ---EEEEETTTTEEEE--SS-
T ss_pred cCCEEEEECCCCEEEECCCCC
Confidence 568899999999999996554
|
|
| >PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function | Back alignment and domain information |
|---|
Probab=80.23 E-value=50 Score=30.66 Aligned_cols=101 Identities=15% Similarity=0.196 Sum_probs=58.0
Q ss_pred EEEEEECCCceEeeecCCCCCCCCCceeEEEecCeEEEEEec--CCCC------EEEEEEeC------C--C--ceeeEE
Q 048178 232 VILSFHMAEEKFQEIQGPCTLESSLDVTLGIYDQSLSLLLLD--TVDH------CFKIWVMQ------K--K--NWIKQS 293 (376)
Q Consensus 232 ~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~~g~L~l~~~~--~~~~------~l~vW~l~------~--~--~W~~~~ 293 (376)
..+.||.++...... |.-.........+..+|+||++... .... .+++-... . . +|..+-
T Consensus 87 ~t~vyDt~t~av~~~--P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP 164 (342)
T PF07893_consen 87 RTLVYDTDTRAVATG--PRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRSLP 164 (342)
T ss_pred CeEEEECCCCeEecc--CCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEcCC
Confidence 588999998877744 4322221223444558889998882 1111 56665433 1 3 454432
Q ss_pred EECCCCce-------eeeEEEeeCCc-EEEEEcCC--eEEEEeCCCCcEEEEE
Q 048178 294 SVGPFIGI-------FQPLLFWKKGA-FFVESNSS--QLLLYEPGTGELRDFE 336 (376)
Q Consensus 294 ~i~~~~~~-------~~~~~~~~~g~-i~~~~~~~--~~~~yd~~t~~~~~v~ 336 (376)
.- |+... ....++. +|. |++..... ..+.||.++.+|++++
T Consensus 165 ~P-Pf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~~GTysfDt~~~~W~~~G 215 (342)
T PF07893_consen 165 PP-PFVRDRRYSDYRITSYAVV-DGRTIFVSVNGRRWGTYSFDTESHEWRKHG 215 (342)
T ss_pred CC-CccccCCcccceEEEEEEe-cCCeEEEEecCCceEEEEEEcCCcceeecc
Confidence 21 22211 2223334 454 77766644 6999999999999984
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 2e-08
Identities = 64/427 (14%), Positives = 116/427 (27%), Gaps = 151/427 (35%)
Query: 4 LGNDDSPEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFISMHLKN----------- 52
L N +SPE ++ E+L +L + + + I L+
Sbjct: 189 LKNCNSPETVL-EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 53 ----DVN-----------------TR-------LIVIYAKEDNTEEHSHPKEYFCLFPDE 84
+V TR L + + HS L PDE
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT-----LTPDE 302
Query: 85 TLE------DLSLQDLSTQE----PVLGSFKGLYCGIVFIEGLNNRITLWNIATRESVTL 134
D QDL + P S + E + + + W+ + V
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLS--------IIAESIRDGLATWD--NWKHVNC 352
Query: 135 PKYRAII--------PQYTR-------VF--GTKIGFGLDPKTKDYKVVLILTLWDEKRD 177
K II P R VF I P ++ ++ W +
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI-----P----TILLSLI--WFDVIK 401
Query: 178 SSCPFSLVTVYNLS-TNSWRNLKSI-------DYTMRLSSERT--------Y-FDGAFYW 220
S + ++ S +I + ++L +E Y F
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 221 LLKLENDNDNYVI--LSFHMAE----EKFQEIQGPCTLESSLDVTLGIYDQSLSLLLLDT 274
+ D Y + H+ E+ ++ LD
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTL---------------------FRMVFLD- 499
Query: 275 VDHCFKIWVMQK--KNWIKQSSVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGEL 332
F+ ++ QK + ++ G + Q L F+K + +++ YE +
Sbjct: 500 ----FR-FLEQKIRHDSTAWNASGSILNTLQQLKFYKP--YICDNDPK----YERLVNAI 548
Query: 333 RDFELEC 339
DF +
Sbjct: 549 LDFLPKI 555
|
| >2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297 | Back alignment and structure |
|---|
Score = 51.9 bits (123), Expect = 1e-07
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 10 PEDIMIEILSRLPVKSLIRL-RCVCKSWYALIKNPNFISMHL 50
PE +++ +L+ LP L++ R VC W L+ +
Sbjct: 55 PEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKC 96
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 2e-07
Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 6/101 (5%)
Query: 10 PEDIMIEILSRLPVKSLIRLRCVCKSWYALI------KNPNFISMHLKNDVNTRLIVIYA 63
P+++++ I S L + L+++ VCK WY L + + +L DV RL+
Sbjct: 13 PDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGV 72
Query: 64 KEDNTEEHSHPKEYFCLFPDETLEDLSLQDLSTQEPVLGSF 104
+ F ++ + L + + L
Sbjct: 73 IAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI 113
|
| >1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 3e-07
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 10 PEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNP 43
P+++++ I S L + L+++ VCK WY L +
Sbjct: 13 PDELLLGIFSCLCLPELLKVSGVCKRWYRLASDE 46
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 1e-05
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 10 PEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPN 44
P D+ + ILS L L +L W +++P
Sbjct: 9 PIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPI 43
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 376 | |||
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 99.48 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 99.48 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 99.45 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 99.43 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 99.42 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 99.42 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 99.37 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 99.34 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 99.32 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 99.31 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 99.24 | |
| 2e31_A | 297 | FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui | 99.14 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 99.14 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 99.13 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 99.09 | |
| 1fs1_A | 53 | SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L | 99.09 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 99.02 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 98.88 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 98.86 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.61 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 98.58 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 98.36 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.17 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 97.97 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 97.45 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 97.0 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 96.34 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 95.93 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 95.57 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 95.42 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 95.13 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 94.71 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 94.51 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 94.47 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 94.46 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 94.38 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 93.89 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 93.31 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 92.91 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 92.32 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 92.11 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 92.03 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 91.47 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 91.31 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 91.12 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 91.1 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 90.72 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 90.55 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 90.09 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 89.83 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 89.61 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 89.08 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 89.06 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 89.05 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 88.4 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 88.06 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 87.91 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 87.71 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 87.56 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 87.32 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 86.86 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 86.67 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 86.53 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 86.46 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 86.44 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 86.36 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 85.65 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 85.35 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 85.23 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 84.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 84.93 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 84.9 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 84.71 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 84.34 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 83.62 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 83.44 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 83.43 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 83.26 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 83.25 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 82.31 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 81.39 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 81.29 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 81.28 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 81.08 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 81.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 80.81 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 80.56 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 80.39 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 80.35 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 80.21 |
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=3e-11 Score=109.68 Aligned_cols=196 Identities=8% Similarity=0.013 Sum_probs=129.5
Q ss_pred eEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceEecc
Q 048178 120 RITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRNLK 199 (376)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~ 199 (376)
.++++||.|++|..+|+.+..+... .....+ . +|+.++......+ ......+++|+..+++|+.++
T Consensus 68 ~~~~~d~~~~~W~~~~~~p~~r~~~-------~~~~~~----~-~lyv~GG~~~~~~--~~~~~~~~~~d~~~~~W~~~~ 133 (315)
T 4asc_A 68 YFLQFDHLDSEWLGMPPLPSPRCLF-------GLGEAL----N-SIYVVGGREIKDG--ERCLDSVMCYDRLSFKWGESD 133 (315)
T ss_dssp EEEEEETTTTEEEECCCBSSCEESC-------EEEEET----T-EEEEECCEESSTT--CCBCCCEEEEETTTTEEEECC
T ss_pred ceEEecCCCCeEEECCCCCcchhce-------eEEEEC----C-EEEEEeCCcCCCC--CcccceEEEECCCCCcEeECC
Confidence 3789999999999999876543111 111111 1 4555432211011 133568999999999999998
Q ss_pred ccCccccCCCCeEEECceEEEEeeecC-CCCccEEEEEECCCceEeee-cCCCCCCCCCceeEEEecCeEEEEEecCCC-
Q 048178 200 SIDYTMRLSSERTYFDGAFYWLLKLEN-DNDNYVILSFHMAEEKFQEI-QGPCTLESSLDVTLGIYDQSLSLLLLDTVD- 276 (376)
Q Consensus 200 ~~~~~~~~~~~~v~~~G~lywl~~~~~-~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~~~g~L~l~~~~~~~- 276 (376)
.+|... ....++.++|.+|.+++... ......+..||+.+++|+.+ ++|..... ...++++|+|++++.....
T Consensus 134 ~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~---~~~~~~~~~iyv~GG~~~~~ 209 (315)
T 4asc_A 134 PLPYVV-YGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSL---FGATVHDGRIIVAAGVTDTG 209 (315)
T ss_dssp CCSSCC-BSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBS---CEEEEETTEEEEEEEECSSS
T ss_pred CCCCcc-cceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhc---eEEEEECCEEEEEeccCCCC
Confidence 665433 23357789999999987632 22345799999999999998 56654433 5677889999999983222
Q ss_pred CEEEEEEe--CCCceeeEEEECCCCceeeeEEEeeCCcEEEEEcC---------------CeEEEEeCCCCcEEEE
Q 048178 277 HCFKIWVM--QKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESNS---------------SQLLLYEPGTGELRDF 335 (376)
Q Consensus 277 ~~l~vW~l--~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~---------------~~~~~yd~~t~~~~~v 335 (376)
..-.+|.. +..+|..+..+ |........+ .-++.|++.... ..+..||+++++|+++
T Consensus 210 ~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 210 LTSSAEVYSITDNKWAPFEAF-PQERSSLSLV-SLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EEEEEEEEETTTTEEEEECCC-SSCCBSCEEE-EETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred ccceEEEEECCCCeEEECCCC-CCcccceeEE-EECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 22245555 44899999776 5543333333 336777776321 2488999999999999
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=99.48 E-value=5.4e-11 Score=107.61 Aligned_cols=209 Identities=8% Similarity=0.065 Sum_probs=138.5
Q ss_pred eeecceEEEeec----------CCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecC
Q 048178 106 GLYCGIVFIEGL----------NNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEK 175 (376)
Q Consensus 106 ~s~~Gll~~~~~----------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~ 175 (376)
...+|.|++..+ ...++++||.|++|..+|+++..+... ....++ . +|+.++.. ...
T Consensus 67 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-------~~~~~~----~-~iyv~GG~-~~~ 133 (308)
T 1zgk_A 67 CVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI-------GVGVID----G-HIYAVGGS-HGC 133 (308)
T ss_dssp EEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC-------EEEEET----T-EEEEECCE-ETT
T ss_pred EEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCcccc-------EEEEEC----C-EEEEEcCC-CCC
Confidence 344666665532 246899999999999999876543221 112222 1 45554321 111
Q ss_pred CCCCCCcceEEEEEcCCCceEeccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeee-cCCCCCCC
Q 048178 176 RDSSCPFSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCTLES 254 (376)
Q Consensus 176 ~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~ 254 (376)
.....+++|+..+++|+.++.+|... ....++.++|.+|.+++.........+..||+.+++|+.+ ++|.....
T Consensus 134 ----~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~ 208 (308)
T 1zgk_A 134 ----IHHNSVERYEPERDEWHLVAPMLTRR-IGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSG 208 (308)
T ss_dssp ----EECCCEEEEETTTTEEEECCCCSSCC-BSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred ----cccccEEEECCCCCeEeECCCCCccc-cceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCcccc
Confidence 12457999999999999998665432 2335678899999998754322245699999999999988 55554433
Q ss_pred CCceeEEEecCeEEEEEecCC---CCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEc------CCeEEEE
Q 048178 255 SLDVTLGIYDQSLSLLLLDTV---DHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESN------SSQLLLY 325 (376)
Q Consensus 255 ~~~~~l~~~~g~L~l~~~~~~---~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~------~~~~~~y 325 (376)
...++++++|++++.... ...+.++.++..+|.++..+ |......-.+ .-++.|++... ...+..|
T Consensus 209 ---~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~-p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~y 283 (308)
T 1zgk_A 209 ---AGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM-KHRRSALGIT-VHQGRIYVLGGYDGHTFLDSVECY 283 (308)
T ss_dssp ---CEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC-SSCCBSCEEE-EETTEEEEECCBCSSCBCCEEEEE
T ss_pred ---ceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCC-CCCccceEEE-EECCEEEEEcCcCCCcccceEEEE
Confidence 467778999999987321 24566666666999998766 5543322233 33778887743 3469999
Q ss_pred eCCCCcEEEEEE
Q 048178 326 EPGTGELRDFEL 337 (376)
Q Consensus 326 d~~t~~~~~v~~ 337 (376)
|+++++|+++.-
T Consensus 284 d~~~~~W~~~~~ 295 (308)
T 1zgk_A 284 DPDTDTWSEVTR 295 (308)
T ss_dssp ETTTTEEEEEEE
T ss_pred cCCCCEEeecCC
Confidence 999999999843
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.4e-11 Score=108.70 Aligned_cols=210 Identities=13% Similarity=0.090 Sum_probs=140.5
Q ss_pred eeecceEEEeec-----CCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCC
Q 048178 106 GLYCGIVFIEGL-----NNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSC 180 (376)
Q Consensus 106 ~s~~Gll~~~~~-----~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~ 180 (376)
...+|.|++..+ ...+.++||.|++|..+|+++..+... ....++ . +|+.++. .... ..
T Consensus 52 ~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-------~~~~~~----~-~iyv~GG-~~~~---~~ 115 (306)
T 3ii7_A 52 VFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSL-------AACAAE----G-KIYTSGG-SEVG---NS 115 (306)
T ss_dssp EEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSC-------EEEEET----T-EEEEECC-BBTT---BS
T ss_pred EEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccce-------eEEEEC----C-EEEEECC-CCCC---Cc
Confidence 345776665543 357899999999999998876543221 112221 1 4444432 1101 13
Q ss_pred CcceEEEEEcCCCceEeccccCccccCCCCeEEECceEEEEeeecCCCC----ccEEEEEECCCceEeee-cCCCCCCCC
Q 048178 181 PFSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDND----NYVILSFHMAEEKFQEI-QGPCTLESS 255 (376)
Q Consensus 181 ~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~----~~~i~~fD~~~e~~~~i-~lP~~~~~~ 255 (376)
....+++|++.+++|+.++.+|.... ...++.++|.+|.+++...... ...+..||+++++|+.+ ++|.....
T Consensus 116 ~~~~~~~~d~~~~~W~~~~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~- 193 (306)
T 3ii7_A 116 ALYLFECYDTRTESWHTKPSMLTQRC-SHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKN- 193 (306)
T ss_dssp CCCCEEEEETTTTEEEEECCCSSCCB-SCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBS-
T ss_pred EeeeEEEEeCCCCceEeCCCCcCCcc-eeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhc-
Confidence 35689999999999999987654332 3346788999999987543322 45699999999999999 55654433
Q ss_pred CceeEEEecCeEEEEEecCC---CCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEc------CCeEEEEe
Q 048178 256 LDVTLGIYDQSLSLLLLDTV---DHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESN------SSQLLLYE 326 (376)
Q Consensus 256 ~~~~l~~~~g~L~l~~~~~~---~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~------~~~~~~yd 326 (376)
..+++++|+|++++.... ...+.++.++..+|..+..+ |......-.+ .-++.|++... ...+..||
T Consensus 194 --~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~~~~yd 269 (306)
T 3ii7_A 194 --HGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPM-PWKGVTVKCA-AVGSIVYVLAGFQGVGRLGHILEYN 269 (306)
T ss_dssp --CEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCC-SCCBSCCEEE-EETTEEEEEECBCSSSBCCEEEEEE
T ss_pred --ceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCC-CCCccceeEE-EECCEEEEEeCcCCCeeeeeEEEEc
Confidence 567788999999987311 24455666666899998776 5543333333 33778887743 25699999
Q ss_pred CCCCcEEEEEE
Q 048178 327 PGTGELRDFEL 337 (376)
Q Consensus 327 ~~t~~~~~v~~ 337 (376)
+++++|+.+.-
T Consensus 270 ~~~~~W~~~~~ 280 (306)
T 3ii7_A 270 TETDKWVANSK 280 (306)
T ss_dssp TTTTEEEEEEE
T ss_pred CCCCeEEeCCC
Confidence 99999999853
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.9e-11 Score=106.86 Aligned_cols=208 Identities=9% Similarity=0.088 Sum_probs=139.1
Q ss_pred eeecceEEEeec------CCeEEEEecCccc---eeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCC
Q 048178 106 GLYCGIVFIEGL------NNRITLWNIATRE---SVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKR 176 (376)
Q Consensus 106 ~s~~Gll~~~~~------~~~~~V~NP~T~~---~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~ 176 (376)
...+|.|++..+ ...++++||.|++ |..+|+.+..+... ....++ . +|+.++.. ...
T Consensus 59 ~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~-------~~~~~~----~-~lyv~GG~-~~~- 124 (301)
T 2vpj_A 59 VSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLA-------GATTLG----D-MIYVSGGF-DGS- 124 (301)
T ss_dssp EEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSC-------EEEEET----T-EEEEECCB-CSS-
T ss_pred EEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccce-------eEEEEC----C-EEEEEccc-CCC-
Confidence 345666665532 2468999999999 99998877543221 112222 2 45444321 111
Q ss_pred CCCCCcceEEEEEcCCCceEeccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeee-cCCCCCCCC
Q 048178 177 DSSCPFSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCTLESS 255 (376)
Q Consensus 177 ~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~ 255 (376)
.....+++|+..+++|+.++.+|... ....++.++|.+|.+++.........+..||+++++|+.+ ++|.....
T Consensus 125 ---~~~~~~~~~d~~~~~W~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~- 199 (301)
T 2vpj_A 125 ---RRHTSMERYDPNIDQWSMLGDMQTAR-EGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSG- 199 (301)
T ss_dssp ---CBCCEEEEEETTTTEEEEEEECSSCC-BSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBS-
T ss_pred ---cccceEEEEcCCCCeEEECCCCCCCc-ccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCccccc-
Confidence 22468999999999999987665332 2335678899999988654322245799999999999998 55655433
Q ss_pred CceeEEEecCeEEEEEecCC---CCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEc-C-----CeEEEEe
Q 048178 256 LDVTLGIYDQSLSLLLLDTV---DHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESN-S-----SQLLLYE 326 (376)
Q Consensus 256 ~~~~l~~~~g~L~l~~~~~~---~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~-~-----~~~~~yd 326 (376)
..++..+++|++++.... ...+.++.++..+|..+..+ |......-.+ .-++.|++... . ..+..||
T Consensus 200 --~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~-p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd 275 (301)
T 2vpj_A 200 --AGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSM-TTPRCYVGAT-VLRGRLYAIAGYDGNSLLSSIECYD 275 (301)
T ss_dssp --CEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCC-SSCCBSCEEE-EETTEEEEECCBCSSSBEEEEEEEE
T ss_pred --ceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCC-CCcccceeEE-EECCEEEEEcCcCCCcccccEEEEc
Confidence 567788999999988322 34566666666899998776 5543333333 33778887743 1 4589999
Q ss_pred CCCCcEEEEE
Q 048178 327 PGTGELRDFE 336 (376)
Q Consensus 327 ~~t~~~~~v~ 336 (376)
+++++|+.+.
T Consensus 276 ~~~~~W~~~~ 285 (301)
T 2vpj_A 276 PIIDSWEVVT 285 (301)
T ss_dssp TTTTEEEEEE
T ss_pred CCCCeEEEcC
Confidence 9999999984
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-10 Score=105.95 Aligned_cols=194 Identities=13% Similarity=0.167 Sum_probs=128.8
Q ss_pred EEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceEeccc
Q 048178 121 ITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRNLKS 200 (376)
Q Consensus 121 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~~ 200 (376)
++++||.|++|..+|+.+..+... ....++ . +|+.++...... ......+++|++.+++|+.++.
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~~~-------~~~~~~----~-~iyv~GG~~~~~---~~~~~~~~~yd~~~~~W~~~~~ 144 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARCLF-------GLGEVD----D-KIYVVAGKDLQT---EASLDSVLCYDPVAAKWSEVKN 144 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBCSC-------EEEEET----T-EEEEEEEEBTTT---CCEEEEEEEEETTTTEEEEECC
T ss_pred EEEEeCCCCcEEECCCCCcccccc-------ceEEEC----C-EEEEEcCccCCC---CcccceEEEEeCCCCCEeECCC
Confidence 789999999999998876543211 111121 2 455554321111 1234689999999999999986
Q ss_pred cCccccCCCCeEEECceEEEEeeecCCC-CccEEEEEECCCceEeee-cCCCCCCCCCceeEEEecCeEEEEEecCCC--
Q 048178 201 IDYTMRLSSERTYFDGAFYWLLKLENDN-DNYVILSFHMAEEKFQEI-QGPCTLESSLDVTLGIYDQSLSLLLLDTVD-- 276 (376)
Q Consensus 201 ~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~~~g~L~l~~~~~~~-- 276 (376)
+|.... ...++.++|.+|.+++..... ....+..||+++++|+.+ ++|..... ..+++++|+|++++.....
T Consensus 145 ~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~---~~~~~~~~~iyv~GG~~~~~~ 220 (318)
T 2woz_A 145 LPIKVY-GHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSM---FGVAIHKGKIVIAGGVTEDGL 220 (318)
T ss_dssp CSSCEE-SCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBS---CEEEEETTEEEEEEEEETTEE
T ss_pred CCCccc-ccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCccc---ceEEEECCEEEEEcCcCCCCc
Confidence 654332 334677999999998753221 234699999999999998 55654433 4677889999999983222
Q ss_pred -CEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEc---------------CCeEEEEeCCCCcEEEE
Q 048178 277 -HCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESN---------------SSQLLLYEPGTGELRDF 335 (376)
Q Consensus 277 -~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~---------------~~~~~~yd~~t~~~~~v 335 (376)
..++++.++..+|.++..+ |.......++ .-++.|++... ...+..||+++++|+++
T Consensus 221 ~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 221 SASVEAFDLKTNKWEVMTEF-PQERSSISLV-SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp EEEEEEEETTTCCEEECCCC-SSCCBSCEEE-EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred cceEEEEECCCCeEEECCCC-CCcccceEEE-EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 2344444455889998777 6543333333 33678877632 24589999999999998
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-10 Score=104.99 Aligned_cols=208 Identities=12% Similarity=0.161 Sum_probs=138.6
Q ss_pred eeecceEEEeec------CCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCC
Q 048178 106 GLYCGIVFIEGL------NNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSS 179 (376)
Q Consensus 106 ~s~~Gll~~~~~------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~ 179 (376)
...+|.|++..+ ...+.++||.|++|..+|+++..+... ....++ . +++.++.. ...
T Consensus 58 ~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-------~~~~~~----~-~iyv~GG~-~~~---- 120 (302)
T 2xn4_A 58 VYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTL-------GAAVLN----G-LLYAVGGF-DGS---- 120 (302)
T ss_dssp EEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-------EEEEET----T-EEEEEEEE-CSS----
T ss_pred EEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccce-------EEEEEC----C-EEEEEcCC-CCC----
Confidence 345776766532 246899999999999999877543221 111122 2 45554322 111
Q ss_pred CCcceEEEEEcCCCceEeccccCccccCCCCeEEECceEEEEeeecCCC--CccEEEEEECCCceEeee-cCCCCCCCCC
Q 048178 180 CPFSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDN--DNYVILSFHMAEEKFQEI-QGPCTLESSL 256 (376)
Q Consensus 180 ~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~--~~~~i~~fD~~~e~~~~i-~lP~~~~~~~ 256 (376)
.....+++|+..+++|+.++.+|... ....++.++|.+|.+++..... ....+..||+++++|+.+ ++|.....
T Consensus 121 ~~~~~~~~~d~~~~~W~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-- 197 (302)
T 2xn4_A 121 TGLSSVEAYNIKSNEWFHVAPMNTRR-SSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSG-- 197 (302)
T ss_dssp CEEEEEEEEETTTTEEEEECCCSSCC-BSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBS--
T ss_pred ccCceEEEEeCCCCeEeecCCCCCcc-cCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCcccccc--
Confidence 22468999999999999998665432 2334678899999998654321 134689999999999998 56654433
Q ss_pred ceeEEEecCeEEEEEecCC---CCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEc------CCeEEEEeC
Q 048178 257 DVTLGIYDQSLSLLLLDTV---DHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESN------SSQLLLYEP 327 (376)
Q Consensus 257 ~~~l~~~~g~L~l~~~~~~---~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~------~~~~~~yd~ 327 (376)
..+++++|+|++++.... ...+.++.++..+|..+..+ |.......++ .-++.|++... ...+..||+
T Consensus 198 -~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-~~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~ 274 (302)
T 2xn4_A 198 -AGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADM-NMCRRNAGVC-AVNGLLYVVGGDDGSCNLASVEYYNP 274 (302)
T ss_dssp -CEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCC-SSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEET
T ss_pred -ccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCC-CCccccCeEE-EECCEEEEECCcCCCcccccEEEEcC
Confidence 567788999999987322 23555666666899998776 5543322233 33778887743 235999999
Q ss_pred CCCcEEEEE
Q 048178 328 GTGELRDFE 336 (376)
Q Consensus 328 ~t~~~~~v~ 336 (376)
++++|+.+.
T Consensus 275 ~~~~W~~~~ 283 (302)
T 2xn4_A 275 TTDKWTVVS 283 (302)
T ss_dssp TTTEEEECS
T ss_pred CCCeEEECC
Confidence 999999985
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.7e-10 Score=101.90 Aligned_cols=215 Identities=11% Similarity=0.022 Sum_probs=140.3
Q ss_pred CCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceEe
Q 048178 118 NNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRN 197 (376)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~ 197 (376)
...+.++||.+++|..+++++..+... .....+ + +|+.++.. .. .....+++|+..+++|+.
T Consensus 23 ~~~~~~~d~~~~~W~~~~~~p~~r~~~-------~~~~~~----~-~lyv~GG~--~~----~~~~~~~~~d~~~~~W~~ 84 (306)
T 3ii7_A 23 PQSCRYFNPKDYSWTDIRCPFEKRRDA-------ACVFWD----N-VVYILGGS--QL----FPIKRMDCYNVVKDSWYS 84 (306)
T ss_dssp TTSEEEEETTTTEEEECCCCSCCCBSC-------EEEEET----T-EEEEECCB--SS----SBCCEEEEEETTTTEEEE
T ss_pred CceEEEecCCCCCEecCCCCCccccee-------EEEEEC----C-EEEEEeCC--CC----CCcceEEEEeCCCCeEEE
Confidence 456899999999999999877543221 111121 1 34444221 11 235689999999999999
Q ss_pred ccccCccccCCCCeEEECceEEEEeeec-CCCCccEEEEEECCCceEeee-cCCCCCCCCCceeEEEecCeEEEEEec-C
Q 048178 198 LKSIDYTMRLSSERTYFDGAFYWLLKLE-NDNDNYVILSFHMAEEKFQEI-QGPCTLESSLDVTLGIYDQSLSLLLLD-T 274 (376)
Q Consensus 198 ~~~~~~~~~~~~~~v~~~G~lywl~~~~-~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~~~g~L~l~~~~-~ 274 (376)
++.+|... ....++.++|.+|.+++.. .......+..||+.+.+|+.+ ++|..... ...+.++|+|++++.. .
T Consensus 85 ~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~---~~~~~~~~~iyv~GG~~~ 160 (306)
T 3ii7_A 85 KLGPPTPR-DSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCS---HGMVEANGLIYVCGGSLG 160 (306)
T ss_dssp EECCSSCC-BSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBS---CEEEEETTEEEEECCEES
T ss_pred CCCCCccc-cceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcce---eEEEEECCEEEEECCCCC
Confidence 98665432 2334678899999998764 222345799999999999998 56655433 5677889999999882 1
Q ss_pred C------CCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEc------CCeEEEEeCCCCcEEEEEEecc--
Q 048178 275 V------DHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESN------SSQLLLYEPGTGELRDFELECC-- 340 (376)
Q Consensus 275 ~------~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~------~~~~~~yd~~t~~~~~v~~~~~-- 340 (376)
. ...+.++.++..+|.++..+ |......- ++.-++.|++... ...+..||+++++|+.+.-...
T Consensus 161 ~~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~-~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r 238 (306)
T 3ii7_A 161 NNVSGRVLNSCEVYDPATETWTELCPM-IEARKNHG-LVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKG 238 (306)
T ss_dssp CTTTCEECCCEEEEETTTTEEEEECCC-SSCCBSCE-EEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCB
T ss_pred CCCcccccceEEEeCCCCCeEEECCCc-cchhhcce-EEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCc
Confidence 1 34466666666999998766 55433222 3333778887732 2459999999999999853221
Q ss_pred -eEEEEEeecCccccCC
Q 048178 341 -WFSIYIYTESLITLKG 356 (376)
Q Consensus 341 -~~~~~~y~~sLv~~~~ 356 (376)
...+..+...+.-+++
T Consensus 239 ~~~~~~~~~~~i~v~GG 255 (306)
T 3ii7_A 239 VTVKCAAVGSIVYVLAG 255 (306)
T ss_dssp SCCEEEEETTEEEEEEC
T ss_pred cceeEEEECCEEEEEeC
Confidence 3444444444444443
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=1e-09 Score=98.70 Aligned_cols=215 Identities=11% Similarity=0.110 Sum_probs=139.5
Q ss_pred CeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCc---e
Q 048178 119 NRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNS---W 195 (376)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~---W 195 (376)
..++++||.|++|..+|+.+..+.. . .....+ + +|+.++.. ... .....+++|+..+++ |
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~--~-----~~~~~~----~-~l~v~GG~-~~~----~~~~~~~~~d~~~~~~~~W 93 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRY--V-----ASVSLH----D-RIYVIGGY-DGR----SRLSSVECLDYTADEDGVW 93 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBS--C-----EEEEET----T-EEEEECCB-CSS----CBCCCEEEEETTCCTTCCC
T ss_pred eEEEEEcCCCCeEEeCCCCChhhcc--c-----cEEEEC----C-EEEEEcCC-CCC----ccCceEEEEECCCCCCCee
Confidence 4689999999999999977654311 1 112222 1 44444321 111 234689999999999 9
Q ss_pred EeccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeee-cCCCCCCCCCceeEEEecCeEEEEEecC
Q 048178 196 RNLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCTLESSLDVTLGIYDQSLSLLLLDT 274 (376)
Q Consensus 196 ~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~~~g~L~l~~~~~ 274 (376)
+.++.+|... ....++.++|.+|.+++.........+..||+.+.+|+.+ ++|..... ...++.+|+|++++...
T Consensus 94 ~~~~~~p~~r-~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~---~~~~~~~~~iyv~GG~~ 169 (301)
T 2vpj_A 94 YSVAPMNVRR-GLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREG---AGLVVASGVIYCLGGYD 169 (301)
T ss_dssp EEECCCSSCC-BSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBS---CEEEEETTEEEEECCBC
T ss_pred EECCCCCCCc-cceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCccc---ceEEEECCEEEEECCCC
Confidence 9997665432 2334678899999998754332245799999999999988 56654433 56677899999998732
Q ss_pred C---CCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEc------CCeEEEEeCCCCcEEEEEEecc---eE
Q 048178 275 V---DHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESN------SSQLLLYEPGTGELRDFELECC---WF 342 (376)
Q Consensus 275 ~---~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~------~~~~~~yd~~t~~~~~v~~~~~---~~ 342 (376)
. ...+.++.++..+|.++..+ |......- ++.-++.|++... ...+..||+++++|+++.-... .+
T Consensus 170 ~~~~~~~~~~~d~~~~~W~~~~~~-p~~r~~~~-~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~ 247 (301)
T 2vpj_A 170 GLNILNSVEKYDPHTGHWTNVTPM-ATKRSGAG-VALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYV 247 (301)
T ss_dssp SSCBCCCEEEEETTTTEEEEECCC-SSCCBSCE-EEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSC
T ss_pred CCcccceEEEEeCCCCcEEeCCCC-Ccccccce-EEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccce
Confidence 1 24556666666999998766 55433222 3333778887743 2459999999999999853221 33
Q ss_pred EEEEeecCccccCC
Q 048178 343 SIYIYTESLITLKG 356 (376)
Q Consensus 343 ~~~~y~~sLv~~~~ 356 (376)
.+..+...|.-+++
T Consensus 248 ~~~~~~~~i~v~GG 261 (301)
T 2vpj_A 248 GATVLRGRLYAIAG 261 (301)
T ss_dssp EEEEETTEEEEECC
T ss_pred eEEEECCEEEEEcC
Confidence 44445444444443
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.7e-10 Score=99.96 Aligned_cols=215 Identities=8% Similarity=0.083 Sum_probs=139.1
Q ss_pred CeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceEec
Q 048178 119 NRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRNL 198 (376)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~ 198 (376)
..+.++||.+++|..+++.+..+... ..... ++ +|+.++. .... .....+++|+..+++|+.+
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~-------~~~~~----~~-~lyv~GG-~~~~----~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRA-------GMVYM----AG-LVFAVGG-FNGS----LRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSC-------EEEEE----TT-EEEEESC-BCSS----SBCCCEEEEETTTTEEEEE
T ss_pred CcEEEEcCcCCcEeEcccCCcccccc-------eEEEE----CC-EEEEEeC-cCCC----ccccceEEECCCCCceeeC
Confidence 45789999999999998776543211 11111 11 3444421 1111 2245789999999999999
Q ss_pred cccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeee-cCCCCCCCCCceeEEEecCeEEEEEec-CC-
Q 048178 199 KSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCTLESSLDVTLGIYDQSLSLLLLD-TV- 275 (376)
Q Consensus 199 ~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~~~g~L~l~~~~-~~- 275 (376)
+.+|.... ...++.++|.+|.+++.........+..||+.+.+|+.+ ++|..... ...++++|+|++++.. ..
T Consensus 93 ~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~---~~~~~~~~~iyv~GG~~~~~ 168 (302)
T 2xn4_A 93 ANMRDRRS-TLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSS---VGVGVVGGLLYAVGGYDVAS 168 (302)
T ss_dssp CCCSSCCB-SCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBS---CEEEEETTEEEEECCEETTT
T ss_pred CCCCcccc-ceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccC---ceEEEECCEEEEEeCCCCCC
Confidence 86654322 234678899999998765332235689999999999998 55654433 5677889999999872 11
Q ss_pred ---CCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEc------CCeEEEEeCCCCcEEEEEEecc---eEE
Q 048178 276 ---DHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESN------SSQLLLYEPGTGELRDFELECC---WFS 343 (376)
Q Consensus 276 ---~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~------~~~~~~yd~~t~~~~~v~~~~~---~~~ 343 (376)
...+.++.++..+|.++..+ |....... ++.-++.|++... ...+..||+++++|+++.-... ...
T Consensus 169 ~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~ 246 (302)
T 2xn4_A 169 RQCLSTVECYNATTNEWTYIAEM-STRRSGAG-VGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAG 246 (302)
T ss_dssp TEECCCEEEEETTTTEEEEECCC-SSCCBSCE-EEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred CccccEEEEEeCCCCcEEECCCC-cccccccc-EEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCe
Confidence 23466666666899999766 55433332 3333778887743 2459999999999999853221 333
Q ss_pred EEEeecCccccCC
Q 048178 344 IYIYTESLITLKG 356 (376)
Q Consensus 344 ~~~y~~sLv~~~~ 356 (376)
+..+...+.-+++
T Consensus 247 ~~~~~~~i~v~GG 259 (302)
T 2xn4_A 247 VCAVNGLLYVVGG 259 (302)
T ss_dssp EEEETTEEEEECC
T ss_pred EEEECCEEEEECC
Confidence 4444444444443
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=99.31 E-value=4.5e-10 Score=101.51 Aligned_cols=219 Identities=10% Similarity=0.044 Sum_probs=139.1
Q ss_pred CCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEec-CCCCCCCcceEEEEEcCCCceE
Q 048178 118 NNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDE-KRDSSCPFSLVTVYNLSTNSWR 196 (376)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~-~~~~~~~~~~~~vyss~t~~W~ 196 (376)
...+.++||.|++|..+++.+..+... ..... +. +|+.++..... .. ......+++|+..+++|+
T Consensus 38 ~~~~~~~d~~~~~W~~~~~~p~~r~~~-------~~~~~----~~-~lyv~GG~~~~~~~--~~~~~~~~~~d~~~~~W~ 103 (308)
T 1zgk_A 38 LSYLEAYNPSNGTWLRLADLQVPRSGL-------AGCVV----GG-LLYAVGGRNNSPDG--NTDSSALDCYNPMTNQWS 103 (308)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCCBSC-------EEEEE----TT-EEEEECCEEEETTE--EEECCCEEEEETTTTEEE
T ss_pred cceEEEEcCCCCeEeECCCCCcccccc-------eEEEE----CC-EEEEECCCcCCCCC--CeecceEEEECCCCCeEe
Confidence 356899999999999998776543211 11111 11 34444221100 00 012357899999999999
Q ss_pred eccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeee-cCCCCCCCCCceeEEEecCeEEEEEecCC
Q 048178 197 NLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCTLESSLDVTLGIYDQSLSLLLLDTV 275 (376)
Q Consensus 197 ~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~~~g~L~l~~~~~~ 275 (376)
.++.+|... .....+.++|.+|.+++.........+..||+.+.+|+.+ ++|..... ...++++++|++++....
T Consensus 104 ~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~---~~~~~~~~~iyv~GG~~~ 179 (308)
T 1zgk_A 104 PCAPMSVPR-NRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIG---VGVAVLNRLLYAVGGFDG 179 (308)
T ss_dssp ECCCCSSCC-BTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBS---CEEEEETTEEEEECCBCS
T ss_pred ECCCCCcCc-cccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccc---eEEEEECCEEEEEeCCCC
Confidence 998665432 2334678899999998754321234689999999999988 56655433 466778999999988321
Q ss_pred ---CCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEc------CCeEEEEeCCCCcEEEEEEecc---eEE
Q 048178 276 ---DHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESN------SSQLLLYEPGTGELRDFELECC---WFS 343 (376)
Q Consensus 276 ---~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~------~~~~~~yd~~t~~~~~v~~~~~---~~~ 343 (376)
...+.++.++..+|..+..+ |......-.+ .-++.|++... ...+..||+++++|+++.-... ...
T Consensus 180 ~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~ 257 (308)
T 1zgk_A 180 TNRLNSAECYYPERNEWRMITAM-NTIRSGAGVC-VLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALG 257 (308)
T ss_dssp SCBCCCEEEEETTTTEEEECCCC-SSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCE
T ss_pred CCcCceEEEEeCCCCeEeeCCCC-CCccccceEE-EECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceE
Confidence 34566666666999998766 5543323223 33778887743 2459999999999999853211 334
Q ss_pred EEEeecCccccCC
Q 048178 344 IYIYTESLITLKG 356 (376)
Q Consensus 344 ~~~y~~sLv~~~~ 356 (376)
+..+...|.-+++
T Consensus 258 ~~~~~~~i~v~GG 270 (308)
T 1zgk_A 258 ITVHQGRIYVLGG 270 (308)
T ss_dssp EEEETTEEEEECC
T ss_pred EEEECCEEEEEcC
Confidence 4444444444443
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.4e-09 Score=97.00 Aligned_cols=202 Identities=10% Similarity=0.067 Sum_probs=127.3
Q ss_pred CeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEec-CCCCCCCcceEEEEEcCCCceEe
Q 048178 119 NRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDE-KRDSSCPFSLVTVYNLSTNSWRN 197 (376)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~-~~~~~~~~~~~~vyss~t~~W~~ 197 (376)
..+.++||.|++|.. ++.+.+..... ..... ..+ +|+.++..... ..........+++|+..+++|+.
T Consensus 13 ~~~~~yd~~~~~W~~-~~~~~p~~r~~------~~~~~--~~~--~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~ 81 (315)
T 4asc_A 13 EGAVAYDPAANECYC-ASLSSQVPKNH------VSLVT--KEN--QVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG 81 (315)
T ss_dssp TEEEEEETTTTEEEE-EECCCCSCSSE------EEEEC--TTC--CEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE
T ss_pred CceEEECCCCCeEec-CCCCCCCCccc------eEEEE--ECC--EEEEEcCcccCCCCCccccccceEEecCCCCeEEE
Confidence 568999999999986 33322211111 12221 122 33333322111 11101112358999999999999
Q ss_pred ccccCccccCCCCeEEECceEEEEeeecC---CCCccEEEEEECCCceEeee-cCCCCCCCCCceeEEEecCeEEEEEec
Q 048178 198 LKSIDYTMRLSSERTYFDGAFYWLLKLEN---DNDNYVILSFHMAEEKFQEI-QGPCTLESSLDVTLGIYDQSLSLLLLD 273 (376)
Q Consensus 198 ~~~~~~~~~~~~~~v~~~G~lywl~~~~~---~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~~~g~L~l~~~~ 273 (376)
++.+|.... ....+.++|.+|.+++... ......+..||+.+.+|+.+ ++|..... ...+..+|+|++++..
T Consensus 82 ~~~~p~~r~-~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~---~~~~~~~~~iyv~GG~ 157 (315)
T 4asc_A 82 MPPLPSPRC-LFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG---HTVLSHMDLVYVIGGK 157 (315)
T ss_dssp CCCBSSCEE-SCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS---CEEEEETTEEEEECCB
T ss_pred CCCCCcchh-ceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc---eeEEEECCEEEEEeCC
Confidence 987654332 2357788999999987531 12245689999999999988 66655433 5677899999999883
Q ss_pred -CC---CCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEc-C-----CeEEEEeCCCCcEEEEEE
Q 048178 274 -TV---DHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESN-S-----SQLLLYEPGTGELRDFEL 337 (376)
Q Consensus 274 -~~---~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~-~-----~~~~~yd~~t~~~~~v~~ 337 (376)
.. ...+.++..+..+|.++..+ |.+....- ++.-++.|++... . ..+..||+++++|+++.-
T Consensus 158 ~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 229 (315)
T 4asc_A 158 GSDRKCLNKMCVYDPKKFEWKELAPM-QTARSLFG-ATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA 229 (315)
T ss_dssp CTTSCBCCCEEEEETTTTEEEECCCC-SSCCBSCE-EEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC
T ss_pred CCCCcccceEEEEeCCCCeEEECCCC-CCchhceE-EEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCC
Confidence 21 23455555555899998776 55433332 3333778887643 1 259999999999999953
|
| >2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1.6e-11 Score=108.30 Aligned_cols=53 Identities=21% Similarity=0.476 Sum_probs=49.0
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCccccc-eeeecchhhhhhcCChHHHHHHhhcC
Q 048178 1 MVLLGNDDSPEDIMIEILSRLPVKSLI-RLRCVCKSWYALIKNPNFISMHLKND 53 (376)
Q Consensus 1 ~~~~~~~~LP~Dll~eIl~rLp~~~l~-r~r~VcK~W~~li~~p~F~~~~~~~~ 53 (376)
|+++.+..||+||+.+||+|||+++|+ ||++|||+|++++++|.|.+.++.+.
T Consensus 46 ~~~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~ 99 (297)
T 2e31_A 46 EAVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE 99 (297)
T ss_dssp -CCCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT
T ss_pred ccccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc
Confidence 346778999999999999999999999 99999999999999999999998876
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.14 E-value=6.2e-09 Score=94.40 Aligned_cols=230 Identities=12% Similarity=0.089 Sum_probs=136.6
Q ss_pred cceEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEe-cCCCCCCCcceEEE
Q 048178 109 CGIVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWD-EKRDSSCPFSLVTV 187 (376)
Q Consensus 109 ~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~-~~~~~~~~~~~~~v 187 (376)
++.|++..+ ..+.++||.|++|...|.+. ...... ..... ..+ +|+.++.... ...........+++
T Consensus 15 ~~~i~~~GG-~~~~~yd~~~~~W~~~~~~~-~~~r~~------~~~~~--~~~--~lyv~GG~~~~~~~~~~~~~~~~~~ 82 (318)
T 2woz_A 15 KDLILLVND-TAAVAYDPMENECYLTALAE-QIPRNH------SSIVT--QQN--QVYVVGGLYVDEENKDQPLQSYFFQ 82 (318)
T ss_dssp EEEEEEECS-SEEEEEETTTTEEEEEEECT-TSCSSE------EEEEC--SSS--CEEEEESSCC-------CCCBEEEE
T ss_pred cchhhhccc-cceEEECCCCCceecccCCc-cCCccc------eEEEE--ECC--EEEEECCcccCccccCCCccccEEE
Confidence 344444443 34689999999999844321 111111 11111 111 2333322100 00000011234899
Q ss_pred EEcCCCceEeccccCccccCCCCeEEECceEEEEeeecC--CCCccEEEEEECCCceEeee-cCCCCCCCCCceeEEEec
Q 048178 188 YNLSTNSWRNLKSIDYTMRLSSERTYFDGAFYWLLKLEN--DNDNYVILSFHMAEEKFQEI-QGPCTLESSLDVTLGIYD 264 (376)
Q Consensus 188 yss~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~~~ 264 (376)
|+..+++|+.++.+|.... ....+.++|.+|.+++... ......+..||+.+.+|+.+ ++|..... ...+..+
T Consensus 83 ~d~~~~~W~~~~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~---~~~~~~~ 158 (318)
T 2woz_A 83 LDNVSSEWVGLPPLPSARC-LFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYG---HNVISHN 158 (318)
T ss_dssp EETTTTEEEECSCBSSCBC-SCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEES---CEEEEET
T ss_pred EeCCCCcEEECCCCCcccc-ccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccc---cEEEEEC
Confidence 9999999999986654332 3346788999999987642 11235689999999999998 66655433 4567789
Q ss_pred CeEEEEEec-CC---CCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEc------CCeEEEEeCCCCcEEE
Q 048178 265 QSLSLLLLD-TV---DHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESN------SSQLLLYEPGTGELRD 334 (376)
Q Consensus 265 g~L~l~~~~-~~---~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~------~~~~~~yd~~t~~~~~ 334 (376)
|+|++++.. .. ...+.++.++..+|.++..+ |......-.+ .-++.|++... ...+..||+++++|++
T Consensus 159 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 236 (318)
T 2woz_A 159 GMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPM-KTPRSMFGVA-IHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEV 236 (318)
T ss_dssp TEEEEECCEESSSCBCCCEEEEETTTTEEEEECCC-SSCCBSCEEE-EETTEEEEEEEEETTEEEEEEEEEETTTCCEEE
T ss_pred CEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCC-CCCcccceEE-EECCEEEEEcCcCCCCccceEEEEECCCCeEEE
Confidence 999999872 11 23455666666899998766 5543222223 33778887642 1358899999999999
Q ss_pred EEEec-c--eEEEEEeecCccccCC
Q 048178 335 FELEC-C--WFSIYIYTESLITLKG 356 (376)
Q Consensus 335 v~~~~-~--~~~~~~y~~sLv~~~~ 356 (376)
+.-.. . ...+..+...|.-+++
T Consensus 237 ~~~~p~~r~~~~~~~~~~~i~v~GG 261 (318)
T 2woz_A 237 MTEFPQERSSISLVSLAGSLYAIGG 261 (318)
T ss_dssp CCCCSSCCBSCEEEEETTEEEEECC
T ss_pred CCCCCCcccceEEEEECCEEEEECC
Confidence 85322 1 3344455555544433
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.13 E-value=7.9e-09 Score=95.19 Aligned_cols=217 Identities=13% Similarity=0.051 Sum_probs=130.6
Q ss_pred eeeecceEEEeec--CCeEEEEecC--ccceeecCCCC-CCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCC
Q 048178 105 KGLYCGIVFIEGL--NNRITLWNIA--TRESVTLPKYR-AIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSS 179 (376)
Q Consensus 105 ~~s~~Gll~~~~~--~~~~~V~NP~--T~~~~~LP~~~-~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~ 179 (376)
....+|.|.+..+ .+.++++||. +++|..+|+.+ ..+.. . ....++ + +|+.++..........
T Consensus 15 ~~~~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~-~------~~~~~~---~--~lyv~GG~~~~~~~~~ 82 (357)
T 2uvk_A 15 GAIDNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQ-A------TSAFID---G--NLYVFGGIGKNSEGLT 82 (357)
T ss_dssp EEEETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBS-C------EEEEET---T--EEEEECCEEECTTSCE
T ss_pred EEEECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCcc-c------eEEEEC---C--EEEEEcCCCCCCCccc
Confidence 3344777766643 4578999998 49999999876 33211 1 112222 1 4444432211000000
Q ss_pred CCcceEEEEEcCCCceEeccccCcccc-CCCCeEEECceEEEEeeecCCC------------------------------
Q 048178 180 CPFSLVTVYNLSTNSWRNLKSIDYTMR-LSSERTYFDGAFYWLLKLENDN------------------------------ 228 (376)
Q Consensus 180 ~~~~~~~vyss~t~~W~~~~~~~~~~~-~~~~~v~~~G~lywl~~~~~~~------------------------------ 228 (376)
.....+++|+..+++|+.++.++ ..+ ....++.++|.+|.+++.....
T Consensus 83 ~~~~~v~~yd~~~~~W~~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (357)
T 2uvk_A 83 QVFNDVHKYNPKTNSWVKLMSHA-PMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKA 161 (357)
T ss_dssp EECCCEEEEETTTTEEEECSCCC-SSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCG
T ss_pred eeeccEEEEeCCCCcEEECCCCC-CcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccc
Confidence 12457999999999999998765 122 2234577999999998643110
Q ss_pred ----CccEEEEEECCCceEeee-cCCCCCCCCCceeEEEecCeEEEEEecC--C--CCEEEEEEe--CCCceeeEEEECC
Q 048178 229 ----DNYVILSFHMAEEKFQEI-QGPCTLESSLDVTLGIYDQSLSLLLLDT--V--DHCFKIWVM--QKKNWIKQSSVGP 297 (376)
Q Consensus 229 ----~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~~~g~L~l~~~~~--~--~~~l~vW~l--~~~~W~~~~~i~~ 297 (376)
....+..||+.+++|+.+ ++|..... ...+++.+++|++++... . ...+.++.+ +..+|.++..+ |
T Consensus 162 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~--~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~-~ 238 (357)
T 2uvk_A 162 EDYFFNKFLLSFDPSTQQWSYAGESPWYGTA--GAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPV-S 238 (357)
T ss_dssp GGGCCCCEEEEEETTTTEEEEEEECSSCCCB--SCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCS-S
T ss_pred cccCCcccEEEEeCCCCcEEECCCCCCCCcc--cccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCC-C
Confidence 124799999999999998 66643221 246778899999998721 1 223344444 33889998766 4
Q ss_pred CCce-eeeEEEeeCCcEEEEEcC-----------------------CeEEEEeCCCCcEEEEEE
Q 048178 298 FIGI-FQPLLFWKKGAFFVESNS-----------------------SQLLLYEPGTGELRDFEL 337 (376)
Q Consensus 298 ~~~~-~~~~~~~~~g~i~~~~~~-----------------------~~~~~yd~~t~~~~~v~~ 337 (376)
.+.- ..-.++.-++.|++.... ..+..||+++++|+++.-
T Consensus 239 ~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~ 302 (357)
T 2uvk_A 239 SPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGE 302 (357)
T ss_dssp TTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEE
T ss_pred CCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCC
Confidence 4321 122233447788877431 247899999999999854
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.6e-08 Score=91.67 Aligned_cols=152 Identities=8% Similarity=0.069 Sum_probs=97.3
Q ss_pred cceEEEEEcCCCceEeccccCccccCCCCeEEECceEEEEeeecCCC-CccEEEEEEC--CCceEeee-cCCCCCCCCCc
Q 048178 182 FSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDN-DNYVILSFHM--AEEKFQEI-QGPCTLESSLD 257 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~~i~~fD~--~~e~~~~i-~lP~~~~~~~~ 257 (376)
...+++|+..+++|+.+..+|.........+.++|.+|.+++..... ....+..||+ ++.+|+.+ ++|..... ..
T Consensus 167 ~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~-~~ 245 (357)
T 2uvk_A 167 NKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGV-AG 245 (357)
T ss_dssp CCEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCC-BS
T ss_pred cccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCccc-cc
Confidence 36899999999999999766543323245788899999997643211 1235777876 89999988 44433221 22
Q ss_pred eeEEEecCeEEEEEecCCC--------------------CEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEE
Q 048178 258 VTLGIYDQSLSLLLLDTVD--------------------HCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVES 317 (376)
Q Consensus 258 ~~l~~~~g~L~l~~~~~~~--------------------~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~ 317 (376)
..+++.+|+|++++..... ..++++.++..+|.++..+ |...... .++.-++.|++..
T Consensus 246 ~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~-~~~~~~~~i~v~G 323 (357)
T 2uvk_A 246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGEL-SQGRAYG-VSLPWNNSLLIIG 323 (357)
T ss_dssp CEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEEC-SSCCBSS-EEEEETTEEEEEE
T ss_pred ceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCC-CCCcccc-eeEEeCCEEEEEe
Confidence 4578899999999872111 2455666666899999888 6654332 2334478888764
Q ss_pred c-C------CeEEEEeCCCCcEEEEE
Q 048178 318 N-S------SQLLLYEPGTGELRDFE 336 (376)
Q Consensus 318 ~-~------~~~~~yd~~t~~~~~v~ 336 (376)
. . ..++.|++++++|.+..
T Consensus 324 G~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 324 GETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp EECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred eeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 3 1 34888999999988764
|
| >1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E | Back alignment and structure |
|---|
Probab=99.09 E-value=3.4e-11 Score=78.26 Aligned_cols=45 Identities=27% Similarity=0.600 Sum_probs=39.2
Q ss_pred CCCCCCCCHHHHHHHHhcCCccccceeeecchhhhhhcCChHHHH
Q 048178 3 LLGNDDSPEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFIS 47 (376)
Q Consensus 3 ~~~~~~LP~Dll~eIl~rLp~~~l~r~r~VcK~W~~li~~p~F~~ 47 (376)
...+..||+|++.+||++||++++.++++|||+|+.++.++.|-+
T Consensus 6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~ 50 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQ 50 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC-
T ss_pred CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHH
Confidence 345789999999999999999999999999999999999988744
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.1e-08 Score=100.71 Aligned_cols=211 Identities=15% Similarity=0.136 Sum_probs=131.5
Q ss_pred ecceEEEeec-----CCeEEEEecCccceeecC-CCC---CCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCC
Q 048178 108 YCGIVFIEGL-----NNRITLWNIATRESVTLP-KYR---AIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDS 178 (376)
Q Consensus 108 ~~Gll~~~~~-----~~~~~V~NP~T~~~~~LP-~~~---~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~ 178 (376)
.+|.|++..+ .+.++++||.|++|..++ +.+ .......+ ....+. . +. +|+.++.. ....
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~h-----s~~~~~-~-~~-~lyv~GG~-~~~~-- 464 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCH-----TFTTIS-R-NN-QLLLIGGR-KAPH-- 464 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSC-----EEEEET-T-TT-EEEEECCB-SSTT--
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccce-----EEEEEc-c-CC-EEEEEcCC-CCCC--
Confidence 4666655543 346899999999999998 522 11111111 112220 0 11 34444321 1110
Q ss_pred CCCcceEEEEEcCCCceEeccccCccccCCCCeEEE-CceEEEEeeecCCCCccEEEEEECCCceEeeec----CCCCCC
Q 048178 179 SCPFSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYF-DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQ----GPCTLE 253 (376)
Q Consensus 179 ~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~-~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~----lP~~~~ 253 (376)
.....+++|+..+++|+.++.+|.... ...++.+ +|.+|.+++.... . .+..||+++++|+.++ +|....
T Consensus 465 -~~~~dv~~yd~~t~~W~~~~~~p~~R~-~h~~~~~~~~~iyv~GG~~~~--~-~v~~yd~~t~~W~~~~~~g~~p~~r~ 539 (695)
T 2zwa_A 465 -QGLSDNWIFDMKTREWSMIKSLSHTRF-RHSACSLPDGNVLILGGVTEG--P-AMLLYNVTEEIFKDVTPKDEFFQNSL 539 (695)
T ss_dssp -CBCCCCEEEETTTTEEEECCCCSBCCB-SCEEEECTTSCEEEECCBCSS--C-SEEEEETTTTEEEECCCSSGGGGSCC
T ss_pred -CccccEEEEeCCCCcEEECCCCCCCcc-cceEEEEcCCEEEEECCCCCC--C-CEEEEECCCCceEEccCCCCCCCccc
Confidence 124579999999999999987654332 2235554 9999999876532 2 7999999999999885 454433
Q ss_pred CCCceeEEEec---CeEEEEEecC-C----CCEEEEEEeCCCc------eeeEEEECC-CCceeeeEEEeeCCcEEEEEc
Q 048178 254 SSLDVTLGIYD---QSLSLLLLDT-V----DHCFKIWVMQKKN------WIKQSSVGP-FIGIFQPLLFWKKGAFFVESN 318 (376)
Q Consensus 254 ~~~~~~l~~~~---g~L~l~~~~~-~----~~~l~vW~l~~~~------W~~~~~i~~-~~~~~~~~~~~~~g~i~~~~~ 318 (376)
. ...++++ |+|++++... . ...+.+|.++... |.++..+ | ......-..+.+++.||+...
T Consensus 540 ~---~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~-p~~~R~~~~~~~~~~~~iyv~GG 615 (695)
T 2zwa_A 540 V---SAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQH-PLFQRYGSQIKYITPRKLLIVGG 615 (695)
T ss_dssp B---SCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEEC-GGGCCBSCEEEEEETTEEEEECC
T ss_pred c---eeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCC-CCCCcccceEEEeCCCEEEEECC
Confidence 2 3444545 8899998831 1 3567777777776 8888775 3 332333344444488887743
Q ss_pred ---------CCeEEEEeCCCCcEEEEEEe
Q 048178 319 ---------SSQLLLYEPGTGELRDFELE 338 (376)
Q Consensus 319 ---------~~~~~~yd~~t~~~~~v~~~ 338 (376)
...+..||+++++|+.+.+.
T Consensus 616 ~~~~~~~~~~~~v~~yd~~t~~W~~~~~p 644 (695)
T 2zwa_A 616 TSPSGLFDRTNSIISLDPLSETLTSIPIS 644 (695)
T ss_dssp BCSSCCCCTTTSEEEEETTTTEEEECCCC
T ss_pred ccCCCCCCCCCeEEEEECCCCeEEEeecc
Confidence 24599999999999976553
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=98.88 E-value=7e-06 Score=77.50 Aligned_cols=284 Identities=13% Similarity=0.072 Sum_probs=145.6
Q ss_pred CCCCCCHHHHHHHHhcCCccccceeeecchhhhhhcCChHHHHHHhhcCCC-CcEEE-EeeeccCccCCCCCceeEEec-
Q 048178 5 GNDDSPEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFISMHLKNDVN-TRLIV-IYAKEDNTEEHSHPKEYFCLF- 81 (376)
Q Consensus 5 ~~~~LP~Dll~eIl~rLp~~~l~r~r~VcK~W~~li~~p~F~~~~~~~~~~-~~~l~-~~~~~~~~~~~~~~~~~~~~~- 81 (376)
....||+|++.+||+.|++++|.++++|||+|+.++.++.+-+........ .+... .............+...+.-.
T Consensus 18 ~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wk~~~~~~~ 97 (445)
T 2ovr_B 18 FISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQH 97 (445)
T ss_dssp TTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHHHHHHHH
T ss_pred hhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeecccccccccccceecCCCccCCcHHHHHhhhh
Confidence 357899999999999999999999999999999999999887766543321 11000 000000000000000000000
Q ss_pred CCCCccccccc----cCCCCCCccceeeeeecceEEEeecCCeEEEEecCccceee-cCCCCCCCCCccccccceEEEee
Q 048178 82 PDETLEDLSLQ----DLSTQEPVLGSFKGLYCGIVFIEGLNNRITLWNIATRESVT-LPKYRAIIPQYTRVFGTKIGFGL 156 (376)
Q Consensus 82 ~~~~~~~~~~~----~l~p~~~~~~~~~~s~~Gll~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~ 156 (376)
.....+..... .+..........+...+.+++....+..+.|||..+++... ++.-. .. ...+.+
T Consensus 98 ~~~~~w~~~~~~~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~-----~~-----v~~~~~ 167 (445)
T 2ovr_B 98 RIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT-----GG-----VWSSQM 167 (445)
T ss_dssp HHHHHHHHSCCCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCS-----SC-----EEEEEE
T ss_pred hhhhcccCCCcceeEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCC-----CC-----EEEEEe
Confidence 00000000000 00001111112344456666666778889999999887544 22111 11 234444
Q ss_pred eCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceE-eccccCccccCCCCeEEECceEEEEeeecCCCCccEEEE
Q 048178 157 DPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWR-NLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILS 235 (376)
Q Consensus 157 d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~-~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~ 235 (376)
+ +. .++.. .....+.+++..++.-. .+... .....++..+|.....+.. ...|..
T Consensus 168 ~---~~-~l~s~-----------~~dg~i~vwd~~~~~~~~~~~~h----~~~v~~~~~~~~~l~s~s~-----dg~i~~ 223 (445)
T 2ovr_B 168 R---DN-IIISG-----------STDRTLKVWNAETGECIHTLYGH----TSTVRCMHLHEKRVVSGSR-----DATLRV 223 (445)
T ss_dssp E---TT-EEEEE-----------ETTSCEEEEETTTTEEEEEECCC----SSCEEEEEEETTEEEEEET-----TSEEEE
T ss_pred c---CC-EEEEE-----------eCCCeEEEEECCcCcEEEEECCC----CCcEEEEEecCCEEEEEeC-----CCEEEE
Confidence 4 22 22221 12457888998877422 11111 0111245555655444433 347899
Q ss_pred EECCCceEee-ecCCCCCCCCCceeEEEecCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEE
Q 048178 236 FHMAEEKFQE-IQGPCTLESSLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFF 314 (376)
Q Consensus 236 fD~~~e~~~~-i~lP~~~~~~~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~ 314 (376)
+|+.+.+... +.... ....-...+|...++... +..+.+|.++.. ..+..+........-+.+ ++..+
T Consensus 224 wd~~~~~~~~~~~~~~-----~~v~~~~~~~~~l~~~~~--dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~--~~~~l 292 (445)
T 2ovr_B 224 WDIETGQCLHVLMGHV-----AAVRCVQYDGRRVVSGAY--DFMVKVWDPETE--TCLHTLQGHTNRVYSLQF--DGIHV 292 (445)
T ss_dssp EESSSCCEEEEEECCS-----SCEEEEEECSSCEEEEET--TSCEEEEEGGGT--EEEEEECCCSSCEEEEEE--CSSEE
T ss_pred EECCCCcEEEEEcCCc-----ccEEEEEECCCEEEEEcC--CCEEEEEECCCC--cEeEEecCCCCceEEEEE--CCCEE
Confidence 9988765432 22111 112223347776666654 788999998763 334444212111222222 56544
Q ss_pred -EEEcCCeEEEEeCCCCcEE
Q 048178 315 -VESNSSQLLLYEPGTGELR 333 (376)
Q Consensus 315 -~~~~~~~~~~yd~~t~~~~ 333 (376)
....++.+..||+++++..
T Consensus 293 ~~~~~d~~i~i~d~~~~~~~ 312 (445)
T 2ovr_B 293 VSGSLDTSIRVWDVETGNCI 312 (445)
T ss_dssp EEEETTSCEEEEETTTCCEE
T ss_pred EEEeCCCeEEEEECCCCCEE
Confidence 4566788999999887644
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=98.86 E-value=3.5e-06 Score=79.86 Aligned_cols=287 Identities=9% Similarity=0.059 Sum_probs=138.7
Q ss_pred CCCCHHHHHHHHhcCCccccceeeecchhhhhhcCC-hHHHHHHhhcCCC---CcEEE----EeeeccCccCCCCCceeE
Q 048178 7 DDSPEDIMIEILSRLPVKSLIRLRCVCKSWYALIKN-PNFISMHLKNDVN---TRLIV----IYAKEDNTEEHSHPKEYF 78 (376)
Q Consensus 7 ~~LP~Dll~eIl~rLp~~~l~r~r~VcK~W~~li~~-p~F~~~~~~~~~~---~~~l~----~~~~~~~~~~~~~~~~~~ 78 (376)
..||+|++.+||+.||+++|.+++.|||+|+.++.+ +..-+.+.....- ...-- ....... .. ....+
T Consensus 16 ~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~ 91 (464)
T 3v7d_B 16 TSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSLNLKLSQKYPK---LS-QQDRL 91 (464)
T ss_dssp HHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHTTSCCTTTHHHHHHHHHHHCTT---SC-HHHHH
T ss_pred HHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhccccccccchhhhhhhhhccCCC---cc-cchhh
Confidence 469999999999999999999999999999999998 7766655432211 00000 0000000 00 00000
Q ss_pred --EecCCC---Ccc-----ccccccCCCCCCccceeeeeecceEEEeecCCeEEEEecCccceee-cCCCCCCCCCcccc
Q 048178 79 --CLFPDE---TLE-----DLSLQDLSTQEPVLGSFKGLYCGIVFIEGLNNRITLWNIATRESVT-LPKYRAIIPQYTRV 147 (376)
Q Consensus 79 --~~~~~~---~~~-----~~~~~~l~p~~~~~~~~~~s~~Gll~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~ 147 (376)
.+.... ..+ ......+..........+...+++++....+..+.|||..+++... +..- ...
T Consensus 92 ~~~~~~~~~~~~~w~~~~~~~~~~~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h-----~~~-- 164 (464)
T 3v7d_B 92 RLSFLENIFILKNWYNPKFVPQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGH-----DGG-- 164 (464)
T ss_dssp HHHHHHHHHHHHHHHCTTCCCEEEEEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC-----SSC--
T ss_pred HHHHHHhhhhHhhhcCCCcCcceEEEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCC-----CcC--
Confidence 000000 000 0000001000001112334456677766778889999998887543 2211 111
Q ss_pred ccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceEeccccCccccCCCCeEEE----CceEEEEee
Q 048178 148 FGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYF----DGAFYWLLK 223 (376)
Q Consensus 148 ~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~----~G~lywl~~ 223 (376)
...+.+.+.. .++... ....+.+++.+++.-... .... .....++.+ +|.....+
T Consensus 165 ---V~~l~~~~~~---~l~s~s-----------~dg~i~vwd~~~~~~~~~--~~~h-~~~v~~l~~~~~~~~~~l~s~- 223 (464)
T 3v7d_B 165 ---VWALKYAHGG---ILVSGS-----------TDRTVRVWDIKKGCCTHV--FEGH-NSTVRCLDIVEYKNIKYIVTG- 223 (464)
T ss_dssp ---EEEEEECSTT---EEEEEE-----------TTSCEEEEETTTTEEEEE--ECCC-SSCEEEEEEEESSSCEEEEEE-
T ss_pred ---EEEEEEcCCC---EEEEEe-----------CCCCEEEEECCCCcEEEE--ECCC-CCccEEEEEecCCCCCEEEEE-
Confidence 2345554332 333321 245788888887742211 1000 001112222 23333222
Q ss_pred ecCCCCccEEEEEECCCceEeee-c----------CCCCC-------CCC-CceeEEEecCeEEEEEecCCCCEEEEEEe
Q 048178 224 LENDNDNYVILSFHMAEEKFQEI-Q----------GPCTL-------ESS-LDVTLGIYDQSLSLLLLDTVDHCFKIWVM 284 (376)
Q Consensus 224 ~~~~~~~~~i~~fD~~~e~~~~i-~----------lP~~~-------~~~-~~~~l~~~~g~L~l~~~~~~~~~l~vW~l 284 (376)
.. ...|..+|+.+..-... . .|... ..+ ....-...+|.+.++... +..+.+|.+
T Consensus 224 s~----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~--d~~i~vwd~ 297 (464)
T 3v7d_B 224 SR----DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY--DNTLIVWDV 297 (464)
T ss_dssp ET----TSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEET--TSCEEEEET
T ss_pred cC----CCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeC--CCeEEEEEC
Confidence 22 23677788776542211 0 00000 000 111122345555555544 678999998
Q ss_pred CCCceeeEEEECCCCceeeeEEEeeCCcEEEE-EcCCeEEEEeCCCCcEE
Q 048178 285 QKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVE-SNSSQLLLYEPGTGELR 333 (376)
Q Consensus 285 ~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~-~~~~~~~~yd~~t~~~~ 333 (376)
... ..+..+.....-...+++..+|..++. ..++.+..||+++++..
T Consensus 298 ~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~ 345 (464)
T 3v7d_B 298 AQM--KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM 345 (464)
T ss_dssp TTT--EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred CCC--cEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE
Confidence 763 233444222222444566667775554 56777999999887543
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.2e-06 Score=87.42 Aligned_cols=215 Identities=10% Similarity=0.033 Sum_probs=125.2
Q ss_pred eeecceEEEeec--CCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcc
Q 048178 106 GLYCGIVFIEGL--NNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFS 183 (376)
Q Consensus 106 ~s~~Gll~~~~~--~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~ 183 (376)
...+|.|++..+ ...+.++||.|++|..+|+++..+... ....+ + .+ ||+.++... +.. ....
T Consensus 250 ~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~-------s~~~~-~-dg--~iyv~GG~~-~~~---~~~~ 314 (656)
T 1k3i_A 250 MDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQ-------SSATM-S-DG--RVFTIGGSW-SGG---VFEK 314 (656)
T ss_dssp ECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSC-------EEEEC-T-TS--CEEEECCCC-CSS---SCCC
T ss_pred CCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCcccccc-------ceEEe-c-CC--eEEEEeCcc-cCC---cccc
Confidence 345787777654 347899999999999999876543211 11221 0 11 344442211 111 2346
Q ss_pred eEEEEEcCCCceEeccccC-cccc--CCCCeEEECceEEEEeeecCCC----CccEEEEEECCCceEeeecCCCCC----
Q 048178 184 LVTVYNLSTNSWRNLKSID-YTMR--LSSERTYFDGAFYWLLKLENDN----DNYVILSFHMAEEKFQEIQGPCTL---- 252 (376)
Q Consensus 184 ~~~vyss~t~~W~~~~~~~-~~~~--~~~~~v~~~G~lywl~~~~~~~----~~~~i~~fD~~~e~~~~i~lP~~~---- 252 (376)
.+++|+..+++|+.++... ..++ .....+..++.+|.+....... ....+..||++++.|.....+...
T Consensus 315 ~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~ 394 (656)
T 1k3i_A 315 NGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGV 394 (656)
T ss_dssp CEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEE
T ss_pred cceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCcccccccc
Confidence 7999999999999875321 1111 1223445788888877543210 134789999999988643111110
Q ss_pred -CCCCceeEE---EecCeEEEEEecCC------CC---EEEEEEeCCCceeeEE--EECCCCceeeeEEEeeCCcEEEEE
Q 048178 253 -ESSLDVTLG---IYDQSLSLLLLDTV------DH---CFKIWVMQKKNWIKQS--SVGPFIGIFQPLLFWKKGAFFVES 317 (376)
Q Consensus 253 -~~~~~~~l~---~~~g~L~l~~~~~~------~~---~l~vW~l~~~~W~~~~--~i~~~~~~~~~~~~~~~g~i~~~~ 317 (376)
........+ ..+|+|++++.... .. .+++|..+...|.++. .+ |......-..+..+|+||+..
T Consensus 395 ~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~m-p~~R~~~~~~~l~~g~i~v~G 473 (656)
T 1k3i_A 395 APDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGL-YFARTFHTSVVLPDGSTFITG 473 (656)
T ss_dssp CCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCC-SSCCBSCEEEECTTSCEEEEC
T ss_pred CCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCC-CCCcccCCeEECCCCCEEEEC
Confidence 000011111 24889999987311 11 3444444448899886 66 554333333444588888874
Q ss_pred cC------------CeEEEEeCCCCcEEEEE
Q 048178 318 NS------------SQLLLYEPGTGELRDFE 336 (376)
Q Consensus 318 ~~------------~~~~~yd~~t~~~~~v~ 336 (376)
.. ..+..||+++++|+.+.
T Consensus 474 G~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~ 504 (656)
T 1k3i_A 474 GQRRGIPFEDSTPVFTPEIYVPEQDTFYKQN 504 (656)
T ss_dssp CBSBCCTTCCCSBCCCCEEEEGGGTEEEECC
T ss_pred CcccCcCcCCCCcccceEEEcCCCCceeecC
Confidence 31 35899999999999875
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=2.3e-05 Score=73.74 Aligned_cols=284 Identities=15% Similarity=0.128 Sum_probs=138.2
Q ss_pred CCCCHH----HHHHHHhcCCccccceeeecchhhhhhcCChHHHHHHhhcCCC-----------CcEE--EEeeeccCcc
Q 048178 7 DDSPED----IMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFISMHLKNDVN-----------TRLI--VIYAKEDNTE 69 (376)
Q Consensus 7 ~~LP~D----ll~eIl~rLp~~~l~r~r~VcK~W~~li~~p~F~~~~~~~~~~-----------~~~l--~~~~~~~~~~ 69 (376)
..||+| |+.+||+.|++++|.++++|||+|+.++.++.+-+........ ..|. ++...... .
T Consensus 12 ~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~-~ 90 (435)
T 1p22_A 12 TALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPPD-G 90 (435)
T ss_dssp HHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHSSSGGGGCC--------
T ss_pred HHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCcchhhhhhhhccchhhhhhccCCCC-C
Confidence 569999 9999999999999999999999999999887766655443211 0000 00000000 0
Q ss_pred CCCCCceeEE-ecC--------CCCccccccccCCC-----CCCccceeeeeecceEEEeecCCeEEEEecCccceeecC
Q 048178 70 EHSHPKEYFC-LFP--------DETLEDLSLQDLST-----QEPVLGSFKGLYCGIVFIEGLNNRITLWNIATRESVTLP 135 (376)
Q Consensus 70 ~~~~~~~~~~-~~~--------~~~~~~~~~~~l~p-----~~~~~~~~~~s~~Gll~~~~~~~~~~V~NP~T~~~~~LP 135 (376)
.... ...+. +.+ ....+......+.. ........+...+..++....++.+.|||..|++....-
T Consensus 91 ~~~~-~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~ 169 (435)
T 1p22_A 91 NAPP-NSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRIL 169 (435)
T ss_dssp --CC-SHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEECCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEE
T ss_pred CCCc-hhhHHhhhhhhhcchhHHHhhhccCCccceEEecccCCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEE
Confidence 0000 00000 000 00000000000000 000011122333445555566778999999988755422
Q ss_pred CCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceEeccccCccccCCCCeEEEC
Q 048178 136 KYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYFD 215 (376)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~ 215 (376)
... ... ...+.+| +.+ ++.. .....+.+++..++.-... .... .....++..+
T Consensus 170 ~~h----~~~-----v~~l~~~---~~~-l~sg-----------~~dg~i~vwd~~~~~~~~~--~~~h-~~~v~~l~~~ 222 (435)
T 1p22_A 170 TGH----TGS-----VLCLQYD---ERV-IITG-----------SSDSTVRVWDVNTGEMLNT--LIHH-CEAVLHLRFN 222 (435)
T ss_dssp CCC----SSC-----EEEEECC---SSE-EEEE-----------ETTSCEEEEESSSCCEEEE--ECCC-CSCEEEEECC
T ss_pred cCC----CCc-----EEEEEEC---CCE-EEEE-----------cCCCeEEEEECCCCcEEEE--EcCC-CCcEEEEEEc
Confidence 111 111 2345543 232 2221 1245788899888753211 1000 0111244445
Q ss_pred ceEEEEeeecCCCCccEEEEEECCCceEee-e-cCCCCCCCCCceeEEEecCeEEEEEecCCCCEEEEEEeCCCceeeEE
Q 048178 216 GAFYWLLKLENDNDNYVILSFHMAEEKFQE-I-QGPCTLESSLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQKKNWIKQS 293 (376)
Q Consensus 216 G~lywl~~~~~~~~~~~i~~fD~~~e~~~~-i-~lP~~~~~~~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~ 293 (376)
+.....+.. ...|..+|+.+..-.. . .+.... ....-...+|...++... +..+.+|.++.. ..+.
T Consensus 223 ~~~l~s~s~-----dg~i~vwd~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~l~s~~~--dg~i~vwd~~~~--~~~~ 290 (435)
T 1p22_A 223 NGMMVTCSK-----DRSIAVWDMASPTDITLRRVLVGHR---AAVNVVDFDDKYIVSASG--DRTIKVWNTSTC--EFVR 290 (435)
T ss_dssp TTEEEEEET-----TSCEEEEECSSSSCCEEEEEECCCS---SCEEEEEEETTEEEEEET--TSEEEEEETTTC--CEEE
T ss_pred CCEEEEeeC-----CCcEEEEeCCCCCCceeeeEecCCC---CcEEEEEeCCCEEEEEeC--CCeEEEEECCcC--cEEE
Confidence 554433333 3378889987654221 1 111111 112333347776666554 789999998873 2333
Q ss_pred EECCCCceeeeEEEeeCCcEEE-EEcCCeEEEEeCCCCcEE
Q 048178 294 SVGPFIGIFQPLLFWKKGAFFV-ESNSSQLLLYEPGTGELR 333 (376)
Q Consensus 294 ~i~~~~~~~~~~~~~~~g~i~~-~~~~~~~~~yd~~t~~~~ 333 (376)
.+..... .+.++.-++..++ ...++.+..||+++++..
T Consensus 291 ~~~~~~~--~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~ 329 (435)
T 1p22_A 291 TLNGHKR--GIACLQYRDRLVVSGSSDNTIRLWDIECGACL 329 (435)
T ss_dssp EEECCSS--CEEEEEEETTEEEEEETTSCEEEEETTTCCEE
T ss_pred EEcCCCC--cEEEEEeCCCEEEEEeCCCeEEEEECCCCCEE
Confidence 4421111 1222222455444 466788999999987543
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=4.7e-06 Score=83.62 Aligned_cols=172 Identities=8% Similarity=-0.007 Sum_probs=110.3
Q ss_pred cceEEEEEcCCCceEecc-ccCc-ccc---CCCCeEEE--CceEEEEeeecCCC-CccEEEEEECCCceEeee-cCCCCC
Q 048178 182 FSLVTVYNLSTNSWRNLK-SIDY-TMR---LSSERTYF--DGAFYWLLKLENDN-DNYVILSFHMAEEKFQEI-QGPCTL 252 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~~-~~~~-~~~---~~~~~v~~--~G~lywl~~~~~~~-~~~~i~~fD~~~e~~~~i-~lP~~~ 252 (376)
...+.+|+..+++|+.++ .+|. ..+ ....++.+ +|.+|.+++..... ....+..||+.+.+|+.+ ++|...
T Consensus 411 ~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R 490 (695)
T 2zwa_A 411 VNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTR 490 (695)
T ss_dssp CCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCC
T ss_pred cCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCc
Confidence 457899999999999987 4221 112 23457788 99999998765322 134689999999999998 566544
Q ss_pred CCCCceeEEEe-cCeEEEEEecCCCCEEEEEEeCCCceeeEEEEC--CCCceeeeEEEee-C-CcEEEEEcC--------
Q 048178 253 ESSLDVTLGIY-DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVG--PFIGIFQPLLFWK-K-GAFFVESNS-------- 319 (376)
Q Consensus 253 ~~~~~~~l~~~-~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~--~~~~~~~~~~~~~-~-g~i~~~~~~-------- 319 (376)
.. ...+++ +|+|++++.......+.+|..+...|..+...+ |.........+.. + +.||+....
T Consensus 491 ~~---h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~ 567 (695)
T 2zwa_A 491 FR---HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVS 567 (695)
T ss_dssp BS---CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBC
T ss_pred cc---ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeee
Confidence 33 456665 899999998432334555555558999887521 3332233323323 3 668877431
Q ss_pred CeEEEEeCCCCc------EEEEEEe---cc-eEEEEEee-cCccccCC
Q 048178 320 SQLLLYEPGTGE------LRDFELE---CC-WFSIYIYT-ESLITLKG 356 (376)
Q Consensus 320 ~~~~~yd~~t~~------~~~v~~~---~~-~~~~~~y~-~sLv~~~~ 356 (376)
..+..||+++++ |+++.-. .. ...+..+. ..|.-+++
T Consensus 568 ~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG 615 (695)
T 2zwa_A 568 DKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGG 615 (695)
T ss_dssp CEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECC
T ss_pred CcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECC
Confidence 459999999999 8888542 11 44455555 44444443
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.17 E-value=7.8e-06 Score=81.54 Aligned_cols=145 Identities=10% Similarity=0.091 Sum_probs=96.3
Q ss_pred EEEEEcCCCceEeccccCccccCCCCeEEE--CceEEEEeeecCCC------CccEEEEEECCCceEeee-cCCCCCCCC
Q 048178 185 VTVYNLSTNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDN------DNYVILSFHMAEEKFQEI-QGPCTLESS 255 (376)
Q Consensus 185 ~~vyss~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~------~~~~i~~fD~~~e~~~~i-~lP~~~~~~ 255 (376)
++.|+..+++|+.+..+|. ....++++ +|.+|.+++..... ....+..||+.+.+|+.+ .+|.....
T Consensus 168 ~~~~dp~~~~W~~~~~~P~---~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~- 243 (656)
T 1k3i_A 168 YTAPQPGLGRWGPTIDLPI---VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDM- 243 (656)
T ss_dssp CCCCCTTSCEEEEEEECSS---CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCC-
T ss_pred cccCCCCCCeeeeeccCCC---CceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCC-
Confidence 3445566889998876554 22234555 99999998654311 123689999999999877 44443322
Q ss_pred CceeEE-EecCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEc--C-----CeEEEEeC
Q 048178 256 LDVTLG-IYDQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESN--S-----SQLLLYEP 327 (376)
Q Consensus 256 ~~~~l~-~~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~--~-----~~~~~yd~ 327 (376)
.....+ ..+|+|++++... ...+++|..+..+|.++..+ +......-.++..+|+||+... + ..+..||+
T Consensus 244 ~~~~~~~~~~g~lyv~GG~~-~~~v~~yd~~t~~W~~~~~~-~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~ 321 (656)
T 1k3i_A 244 FCPGISMDGNGQIVVTGGND-AKKTSLYDSSSDSWIPGPDM-QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSP 321 (656)
T ss_dssp SSCEEEECTTSCEEEECSSS-TTCEEEEEGGGTEEEECCCC-SSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEET
T ss_pred ccccccCCCCCCEEEeCCCC-CCceEEecCcCCceeECCCC-CccccccceEEecCCeEEEEeCcccCCcccccceEeCC
Confidence 222333 3588999999832 34677777666899988766 5443333344444888888754 1 45899999
Q ss_pred CCCcEEEE
Q 048178 328 GTGELRDF 335 (376)
Q Consensus 328 ~t~~~~~v 335 (376)
++++|+.+
T Consensus 322 ~t~~W~~~ 329 (656)
T 1k3i_A 322 SSKTWTSL 329 (656)
T ss_dssp TTTEEEEE
T ss_pred CCCcceeC
Confidence 99999997
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.97 E-value=1.3e-06 Score=76.25 Aligned_cols=52 Identities=23% Similarity=0.323 Sum_probs=46.5
Q ss_pred CCCCCCCHHHHHHHHhcCCccccceeeecchhhhhhcCChHHHHHHhhcCCC
Q 048178 4 LGNDDSPEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFISMHLKNDVN 55 (376)
Q Consensus 4 ~~~~~LP~Dll~eIl~rLp~~~l~r~r~VcK~W~~li~~p~F~~~~~~~~~~ 55 (376)
...+.||+|++..||+.|++++|+++.+|||+||.+..++..-+.++.+..+
T Consensus 3 ~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~ 54 (312)
T 3l2o_B 3 STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLP 54 (312)
T ss_dssp CHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGG
T ss_pred chhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCC
Confidence 3467899999999999999999999999999999999999988887776543
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=97.45 E-value=3.4e-05 Score=69.99 Aligned_cols=42 Identities=29% Similarity=0.690 Sum_probs=38.0
Q ss_pred CCCCCCCHHHHHHHHhcCCccccceeeecchhhhhhcCChHH
Q 048178 4 LGNDDSPEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNF 45 (376)
Q Consensus 4 ~~~~~LP~Dll~eIl~rLp~~~l~r~r~VcK~W~~li~~p~F 45 (376)
..++.||+|++.+||.+|+.+++.+++.|||+|+.++.+|..
T Consensus 7 ~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~ 48 (336)
T 2ast_B 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 48 (336)
T ss_dssp CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTT
T ss_pred CChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchh
Confidence 457899999999999999999999999999999999876653
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00016 Score=70.94 Aligned_cols=39 Identities=28% Similarity=0.449 Sum_probs=29.4
Q ss_pred CCCCCCCCCCHHHHHHHHhcCC-ccccceeeecchhhhhh
Q 048178 1 MVLLGNDDSPEDIMIEILSRLP-VKSLIRLRCVCKSWYAL 39 (376)
Q Consensus 1 ~~~~~~~~LP~Dll~eIl~rLp-~~~l~r~r~VcK~W~~l 39 (376)
|.+-.++.||+|++.+||.+|| .+++.+++.|||+|+.+
T Consensus 1 ~~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 1 MQKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp ---------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred CcccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 4445678999999999999999 99999999999999988
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.00082 Score=65.75 Aligned_cols=34 Identities=15% Similarity=0.455 Sum_probs=31.8
Q ss_pred CCCCCHHHHHHHHhcC-Cccccceeeecchhhhhh
Q 048178 6 NDDSPEDIMIEILSRL-PVKSLIRLRCVCKSWYAL 39 (376)
Q Consensus 6 ~~~LP~Dll~eIl~rL-p~~~l~r~r~VcK~W~~l 39 (376)
...||||++.+||.+| |.+++.+++.|||+|+.+
T Consensus 13 ~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~ 47 (592)
T 3ogk_B 13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI 47 (592)
T ss_dssp CCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred cCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence 3579999999999999 899999999999999887
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.33 Score=41.36 Aligned_cols=114 Identities=10% Similarity=0.162 Sum_probs=76.0
Q ss_pred eE-EECceEEEEeeecCCCCccEEEEEECCCceE-eeecCCCCCCCCCceeEEEecCeEEEEEecCCCCEEEEEEeCCCc
Q 048178 211 RT-YFDGAFYWLLKLENDNDNYVILSFHMAEEKF-QEIQGPCTLESSLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQKKN 288 (376)
Q Consensus 211 ~v-~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~-~~i~lP~~~~~~~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~~~ 288 (376)
++ +.+|.+|--++... ...|..+|+++.+. ..+++|..... -.++..+++|+++... ...+-|+..+.
T Consensus 25 GL~~~~~~LyestG~~g---~S~v~~vD~~tgkv~~~~~l~~~~fg---eGi~~~~~~ly~ltw~--~~~v~v~D~~t-- 94 (243)
T 3mbr_X 25 GLFYLRGHLYESTGETG---RSSVRKVDLETGRILQRAEVPPPYFG---AGIVAWRDRLIQLTWR--NHEGFVYDLAT-- 94 (243)
T ss_dssp EEEEETTEEEEEECCTT---SCEEEEEETTTCCEEEEEECCTTCCE---EEEEEETTEEEEEESS--SSEEEEEETTT--
T ss_pred cEEEECCEEEEECCCCC---CceEEEEECCCCCEEEEEeCCCCcce---eEEEEeCCEEEEEEee--CCEEEEEECCc--
Confidence 44 44566776554432 45899999998766 55688765432 4566778899999875 55555555544
Q ss_pred eeeEEEECCCCceeeeEEEeeCCc-EEEEEcCCeEEEEeCCCCcE-EEEEE
Q 048178 289 WIKQSSVGPFIGIFQPLLFWKKGA-FFVESNSSQLLLYEPGTGEL-RDFEL 337 (376)
Q Consensus 289 W~~~~~i~~~~~~~~~~~~~~~g~-i~~~~~~~~~~~yd~~t~~~-~~v~~ 337 (376)
-.++.++ +... ...++..+|. +++....+++..+|++|.+. +++.+
T Consensus 95 l~~~~ti-~~~~--~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V 142 (243)
T 3mbr_X 95 LTPRARF-RYPG--EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKV 142 (243)
T ss_dssp TEEEEEE-ECSS--CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred CcEEEEE-eCCC--CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEE
Confidence 5666677 5543 3456655554 77887788899999999764 45554
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.64 Score=41.43 Aligned_cols=140 Identities=9% Similarity=0.110 Sum_probs=77.5
Q ss_pred cceEEEEEcCCCceEeccccCccccCCCCeEEEC----ceEEEEeeecCCCCccEEEEEECCCceE-eeecCCCCCCCCC
Q 048178 182 FSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYFD----GAFYWLLKLENDNDNYVILSFHMAEEKF-QEIQGPCTLESSL 256 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~~----G~lywl~~~~~~~~~~~i~~fD~~~e~~-~~i~lP~~~~~~~ 256 (376)
...+.+|+..++.|..+....... ....++.+. |.+...+.. ...|..+|+.+..- ..+.+..... .
T Consensus 78 dg~v~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~-----d~~i~v~d~~~~~~~~~~~~~~~~~--~ 149 (379)
T 3jrp_A 78 DGKVLIWKEENGRWSQIAVHAVHS-ASVNSVQWAPHEYGPLLLVASS-----DGKVSVVEFKENGTTSPIIIDAHAI--G 149 (379)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCS-SCEEEEEECCGGGCSEEEEEET-----TSEEEEEECCTTSCCCEEEEECCTT--C
T ss_pred CCEEEEEEcCCCceeEeeeecCCC-cceEEEEeCCCCCCCEEEEecC-----CCcEEEEecCCCCceeeEEecCCCC--c
Confidence 457899999999887665332111 111233332 444433332 33788888876522 1111111110 0
Q ss_pred ceeEEEe--------------cCeEEEEEecCCCCEEEEEEeCC--CceeeEEEECCCCceeeeEEEeeC---CcEEEE-
Q 048178 257 DVTLGIY--------------DQSLSLLLLDTVDHCFKIWVMQK--KNWIKQSSVGPFIGIFQPLLFWKK---GAFFVE- 316 (376)
Q Consensus 257 ~~~l~~~--------------~g~L~l~~~~~~~~~l~vW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~---g~i~~~- 316 (376)
-..+... ++.+.++... +..+.+|.+.. ..|.....+........-+++.++ +.+++.
T Consensus 150 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~ 227 (379)
T 3jrp_A 150 VNSASWAPATIEEDGEHNGTKESRKFVTGGA--DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV 227 (379)
T ss_dssp EEEEEECCCC----------CTTCEEEEEET--TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred eEEEEEcCccccccccccCCCCCCEEEEEeC--CCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEE
Confidence 1122222 3666666654 67899999976 557777777322222344566666 676654
Q ss_pred EcCCeEEEEeCCCCc
Q 048178 317 SNSSQLLLYEPGTGE 331 (376)
Q Consensus 317 ~~~~~~~~yd~~t~~ 331 (376)
..++.+..||+++..
T Consensus 228 ~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 228 SQDRTCIIWTQDNEQ 242 (379)
T ss_dssp ETTSCEEEEEESSTT
T ss_pred eCCCEEEEEeCCCCC
Confidence 567789999998863
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=95.42 E-value=1.3 Score=39.22 Aligned_cols=196 Identities=11% Similarity=0.069 Sum_probs=108.5
Q ss_pred cceEEEeec-----CCeEEEEecCccceee-cCCCC-CCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCC
Q 048178 109 CGIVFIEGL-----NNRITLWNIATRESVT-LPKYR-AIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCP 181 (376)
Q Consensus 109 ~Gll~~~~~-----~~~~~V~NP~T~~~~~-LP~~~-~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~ 181 (376)
+|++.+..+ ...+.++||.|++... ++... ....... .-++.++ ++...+.. ..
T Consensus 2 ~g~~v~neg~~g~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~-----~~~i~~~---~~~lyv~~-----------~~ 62 (328)
T 3dsm_A 2 SGLFITNEGNFQYSNATLSYYDPATCEVENEVFYRANGFKLGDV-----AQSMVIR---DGIGWIVV-----------NN 62 (328)
T ss_dssp CEEEEEECCCTTSCCBEEEEEETTTTEEECSHHHHHHSSCCBSC-----EEEEEEE---TTEEEEEE-----------GG
T ss_pred CeEEEEecCCCCCCCceEEEEECCCCEEhhhhHhhhcCcccCcc-----ceEEEEE---CCEEEEEE-----------cC
Confidence 455555543 5678999999998754 21100 0000000 1234444 22222222 12
Q ss_pred cceEEEEEcCCCce-EeccccCccccCCCCeEE--ECceEEEEeeecCCCCccEEEEEECCCceEe-eecCCCCCCCC-C
Q 048178 182 FSLVTVYNLSTNSW-RNLKSIDYTMRLSSERTY--FDGAFYWLLKLENDNDNYVILSFHMAEEKFQ-EIQGPCTLESS-L 256 (376)
Q Consensus 182 ~~~~~vyss~t~~W-~~~~~~~~~~~~~~~~v~--~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~-~i~lP~~~~~~-~ 256 (376)
...+.+++..|++- +.++.. . ....+. -+|.+|..... ...|..+|+++.+.. .++.+...... .
T Consensus 63 ~~~v~viD~~t~~~~~~i~~~----~-~p~~i~~~~~g~lyv~~~~-----~~~v~~iD~~t~~~~~~i~~g~~~~~~~~ 132 (328)
T 3dsm_A 63 SHVIFAIDINTFKEVGRITGF----T-SPRYIHFLSDEKAYVTQIW-----DYRIFIINPKTYEITGYIECPDMDMESGS 132 (328)
T ss_dssp GTEEEEEETTTCCEEEEEECC----S-SEEEEEEEETTEEEEEEBS-----CSEEEEEETTTTEEEEEEECTTCCTTTCB
T ss_pred CCEEEEEECcccEEEEEcCCC----C-CCcEEEEeCCCeEEEEECC-----CCeEEEEECCCCeEEEEEEcCCccccCCC
Confidence 45788999988764 333211 1 112332 57888766532 338999999988764 45665421110 1
Q ss_pred ceeEEEecCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEcC-----------CeEEEE
Q 048178 257 DVTLGIYDQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESNS-----------SQLLLY 325 (376)
Q Consensus 257 ~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~-----------~~~~~y 325 (376)
...++..+|+|++... .....+.++.++..+......++ ....-+.+.++|++++.... +.+..+
T Consensus 133 p~~i~~~~~~lyv~~~-~~~~~v~viD~~t~~~~~~i~~g---~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~i 208 (328)
T 3dsm_A 133 TEQMVQYGKYVYVNCW-SYQNRILKIDTETDKVVDELTIG---IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRI 208 (328)
T ss_dssp CCCEEEETTEEEEEEC-TTCCEEEEEETTTTEEEEEEECS---SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEE
T ss_pred cceEEEECCEEEEEcC-CCCCEEEEEECCCCeEEEEEEcC---CCccceEEcCCCCEEEEECCCccCCccccCCceEEEE
Confidence 1245556777888865 12567777777765444333332 11223455668888877542 579999
Q ss_pred eCCCCcEE-EEEE
Q 048178 326 EPGTGELR-DFEL 337 (376)
Q Consensus 326 d~~t~~~~-~v~~ 337 (376)
|++++++. .+.+
T Consensus 209 d~~t~~v~~~~~~ 221 (328)
T 3dsm_A 209 DAETFTVEKQFKF 221 (328)
T ss_dssp ETTTTEEEEEEEC
T ss_pred ECCCCeEEEEEec
Confidence 99999876 4554
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=95.13 E-value=0.59 Score=40.22 Aligned_cols=112 Identities=13% Similarity=0.153 Sum_probs=73.3
Q ss_pred EECceEEEEeeecCCCCccEEEEEECCCceE-eeecCCCCCCCCCceeEEEecCeEEEEEecCCCCEEEEEEeCCCceee
Q 048178 213 YFDGAFYWLLKLENDNDNYVILSFHMAEEKF-QEIQGPCTLESSLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQKKNWIK 291 (376)
Q Consensus 213 ~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~-~~i~lP~~~~~~~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~~~W~~ 291 (376)
+.+|.+|--+.... ...|..+|+++.+. ..+++|+... .-.++..+++|+++... ...+-++..+. -.+
T Consensus 50 ~~~~~LyestG~~g---~S~v~~vD~~Tgkv~~~~~l~~~~F---geGit~~g~~ly~ltw~--~~~v~v~D~~t--~~~ 119 (262)
T 3nol_A 50 YRNGYFYESTGLNG---RSSIRKVDIESGKTLQQIELGKRYF---GEGISDWKDKIVGLTWK--NGLGFVWNIRN--LRQ 119 (262)
T ss_dssp EETTEEEEEEEETT---EEEEEEECTTTCCEEEEEECCTTCC---EEEEEEETTEEEEEESS--SSEEEEEETTT--CCE
T ss_pred EECCEEEEECCCCC---CceEEEEECCCCcEEEEEecCCccc---eeEEEEeCCEEEEEEee--CCEEEEEECcc--CcE
Confidence 44777776665432 45899999998765 5567775432 13466778889999875 55555555554 556
Q ss_pred EEEECCCCceeeeEEEeeCCc-EEEEEcCCeEEEEeCCCCcEE-EEEE
Q 048178 292 QSSVGPFIGIFQPLLFWKKGA-FFVESNSSQLLLYEPGTGELR-DFEL 337 (376)
Q Consensus 292 ~~~i~~~~~~~~~~~~~~~g~-i~~~~~~~~~~~yd~~t~~~~-~v~~ 337 (376)
+.++ +... ...++..+|+ +++....+.+..+|++|.+.. .|.+
T Consensus 120 ~~ti-~~~~--eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V 164 (262)
T 3nol_A 120 VRSF-NYDG--EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITV 164 (262)
T ss_dssp EEEE-ECSS--CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEEC
T ss_pred EEEE-ECCC--CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEe
Confidence 6666 5542 3345555555 666666788999999986544 4544
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=1.8 Score=37.01 Aligned_cols=188 Identities=7% Similarity=-0.039 Sum_probs=98.7
Q ss_pred eecceEEEeec-CCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceE
Q 048178 107 LYCGIVFIEGL-NNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLV 185 (376)
Q Consensus 107 s~~Gll~~~~~-~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 185 (376)
..+|.+.+... ...++++|| +++...+..+... . ...++..|+... +... . .....+
T Consensus 107 ~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~----~----~~~~i~~~~~g~---l~v~-~---------~~~~~i 164 (299)
T 2z2n_A 107 GPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKG----S----YPSFITLGSDNA---LWFT-E---------NQNNAI 164 (299)
T ss_dssp CTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTT----C----CEEEEEECTTSC---EEEE-E---------TTTTEE
T ss_pred CCCCCEEEEecCCceEEEECC-CCCEEEecCCCCC----C----CCceEEEcCCCC---EEEE-e---------CCCCEE
Confidence 34676666653 567899999 7766554322111 0 124666675432 2221 1 123467
Q ss_pred EEEEcCCCceEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEEe
Q 048178 186 TVYNLSTNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIY 263 (376)
Q Consensus 186 ~vyss~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~ 263 (376)
.+|+. ++........ ... ....++.+ +|.+|+.. .. ...|..||. +.++..+.+|.... ....++.-
T Consensus 165 ~~~~~-~g~~~~~~~~-~~~-~~~~~i~~~~~g~l~v~~-~~----~~~i~~~~~-~g~~~~~~~~~~~~--~~~~i~~~ 233 (299)
T 2z2n_A 165 GRITE-SGDITEFKIP-TPA-SGPVGITKGNDDALWFVE-II----GNKIGRITT-SGEITEFKIPTPNA--RPHAITAG 233 (299)
T ss_dssp EEECT-TCCEEEEECS-STT-CCEEEEEECTTSSEEEEE-TT----TTEEEEECT-TCCEEEEECSSTTC--CEEEEEEC
T ss_pred EEEcC-CCcEEEeeCC-CCC-CcceeEEECCCCCEEEEc-cC----CceEEEECC-CCcEEEEECCCCCC--CceeEEEC
Confidence 77777 6666543211 111 11124444 47775443 32 347999999 77777666653221 11234443
Q ss_pred -cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCC-ceeeeEEEeeCCcEEEEEcCCeEEEEeCCCCcEE
Q 048178 264 -DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFI-GIFQPLLFWKKGAFFVESNSSQLLLYEPGTGELR 333 (376)
Q Consensus 264 -~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~-~~~~~~~~~~~g~i~~~~~~~~~~~yd~~t~~~~ 333 (376)
+|.|++.... ...+.+|..+ +.. ....+ +.. ....-+++ .+|.+++....+.+..||+++++++
T Consensus 234 ~~g~l~v~~~~--~~~i~~~d~~-g~~-~~~~~-~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~~~~~~~~ 299 (299)
T 2z2n_A 234 AGIDLWFTEWG--ANKIGRLTSN-NII-EEYPI-QIKSAEPHGICF-DGETIWFAMECDKIGKLTLIKDNME 299 (299)
T ss_dssp STTCEEEEETT--TTEEEEEETT-TEE-EEEEC-SSSSCCEEEEEE-CSSCEEEEETTTEEEEEEEC-----
T ss_pred CCCCEEEeccC--CceEEEECCC-Cce-EEEeC-CCCCCccceEEe-cCCCEEEEecCCcEEEEEcCcccCC
Confidence 5677776643 5667666653 322 12223 211 11233455 7888999876788999999988764
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=94.51 E-value=2.5 Score=37.82 Aligned_cols=190 Identities=9% Similarity=0.012 Sum_probs=100.7
Q ss_pred eEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEc
Q 048178 111 IVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNL 190 (376)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss 190 (376)
+++....+..+.|||..+++....-..... ... ...+.+.+..+.+-+.+ .....+.+++.
T Consensus 88 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h--~~~-----v~~~~~~~~~~~~l~s~------------~~d~~i~iwd~ 148 (383)
T 3ei3_B 88 TVAVGSKGGDIILWDYDVQNKTSFIQGMGP--GDA-----ITGMKFNQFNTNQLFVS------------SIRGATTLRDF 148 (383)
T ss_dssp EEEEEEBTSCEEEEETTSTTCEEEECCCST--TCB-----EEEEEEETTEEEEEEEE------------ETTTEEEEEET
T ss_pred EEEEEcCCCeEEEEeCCCcccceeeecCCc--CCc-----eeEEEeCCCCCCEEEEE------------eCCCEEEEEEC
Confidence 555555567789999998876553322111 111 23555654332322222 12457888998
Q ss_pred CCCceEeccccCccccCCCCeE--EECceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEEe-cCe-
Q 048178 191 STNSWRNLKSIDYTMRLSSERT--YFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIY-DQS- 266 (376)
Q Consensus 191 ~t~~W~~~~~~~~~~~~~~~~v--~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~-~g~- 266 (376)
+++..+......... ....++ .-+|.+...+.. ...|..+|++.+....+..... .-..+... +|.
T Consensus 149 ~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~~~~~~~~~h~~----~v~~~~~~~~~~~ 218 (383)
T 3ei3_B 149 SGSVIQVFAKTDSWD-YWYCCVDVSVSRQMLATGDS-----TGRLLLLGLDGHEIFKEKLHKA----KVTHAEFNPRCDW 218 (383)
T ss_dssp TSCEEEEEECCCCSS-CCEEEEEEETTTTEEEEEET-----TSEEEEEETTSCEEEEEECSSS----CEEEEEECSSCTT
T ss_pred CCCceEEEeccCCCC-CCeEEEEECCCCCEEEEECC-----CCCEEEEECCCCEEEEeccCCC----cEEEEEECCCCCC
Confidence 876665554221100 001122 224554433332 3478899987665554432111 11233333 444
Q ss_pred EEEEEecCCCCEEEEEEeCC--CceeeEEEECCCCceeeeEEEee-CCcEEEE-EcCCeEEEEeCCCCcE
Q 048178 267 LSLLLLDTVDHCFKIWVMQK--KNWIKQSSVGPFIGIFQPLLFWK-KGAFFVE-SNSSQLLLYEPGTGEL 332 (376)
Q Consensus 267 L~l~~~~~~~~~l~vW~l~~--~~W~~~~~i~~~~~~~~~~~~~~-~g~i~~~-~~~~~~~~yd~~t~~~ 332 (376)
+.+.+.. +..+.||.+.. ..-..+..+ .......-+++.. +|..++. ..++.+..||+++.+.
T Consensus 219 ~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~ 285 (383)
T 3ei3_B 219 LMATSSV--DATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK 285 (383)
T ss_dssp EEEEEET--TSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTS
T ss_pred EEEEEeC--CCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc
Confidence 5555544 78999999987 112333334 2332344466677 7776654 5678899999987653
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=94.47 E-value=2.6 Score=37.82 Aligned_cols=134 Identities=10% Similarity=0.100 Sum_probs=75.7
Q ss_pred cceEEEEEcCCC--ceEeccccCccc-------cCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeee-cCCCC
Q 048178 182 FSLVTVYNLSTN--SWRNLKSIDYTM-------RLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCT 251 (376)
Q Consensus 182 ~~~~~vyss~t~--~W~~~~~~~~~~-------~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~ 251 (376)
.-.+..|+.+++ .|+.-...+... .....++..+|.+|.....+ .+.++|.++.+..+- +.+.
T Consensus 197 ~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g------~l~~~d~~tG~~~w~~~~~~- 269 (376)
T 3q7m_A 197 NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNG------NLTALDLRSGQIMWKRELGS- 269 (376)
T ss_dssp TTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTS------CEEEEETTTCCEEEEECCCC-
T ss_pred CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCc------EEEEEECCCCcEEeeccCCC-
Confidence 346777888776 587543221110 02234677788888765433 799999977643332 3221
Q ss_pred CCCCCceeEEEecCeEEEEEecCCCCEEEEEEeCC--CceeeEEEECCCCceeeeEEEeeCCcEEEEEcCCeEEEEeCCC
Q 048178 252 LESSLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQK--KNWIKQSSVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGT 329 (376)
Q Consensus 252 ~~~~~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~yd~~t 329 (376)
...+...++.+++... ...+..+..+. ..|.... + .......|+. .++.|++...++.++.+|+++
T Consensus 270 -----~~~~~~~~~~l~~~~~---~g~l~~~d~~tG~~~w~~~~-~-~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~t 337 (376)
T 3q7m_A 270 -----VNDFIVDGNRIYLVDQ---NDRVMALTIDGGVTLWTQSD-L-LHRLLTSPVL--YNGNLVVGDSEGYLHWINVED 337 (376)
T ss_dssp -----EEEEEEETTEEEEEET---TCCEEEEETTTCCEEEEECT-T-TTSCCCCCEE--ETTEEEEECTTSEEEEEETTT
T ss_pred -----CCCceEECCEEEEEcC---CCeEEEEECCCCcEEEeecc-c-CCCcccCCEE--ECCEEEEEeCCCeEEEEECCC
Confidence 1345556777777664 33455555444 3354320 1 1121233332 367788888888899999999
Q ss_pred CcEEE
Q 048178 330 GELRD 334 (376)
Q Consensus 330 ~~~~~ 334 (376)
++...
T Consensus 338 G~~~~ 342 (376)
T 3q7m_A 338 GRFVA 342 (376)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 87653
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=1.1 Score=38.76 Aligned_cols=110 Identities=9% Similarity=0.040 Sum_probs=70.2
Q ss_pred ceEEEEeeecCCCCccEEEEEECCCceE-eeecCCCCCCCCCceeEEEecCeEEEEEecCCCCEEEEEEeCCCceeeEEE
Q 048178 216 GAFYWLLKLENDNDNYVILSFHMAEEKF-QEIQGPCTLESSLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQKKNWIKQSS 294 (376)
Q Consensus 216 G~lywl~~~~~~~~~~~i~~fD~~~e~~-~~i~lP~~~~~~~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~ 294 (376)
|.+|--..... ...|..+|+++.+. ..+++|..... ..++..++.|+++... ...+.++-.+ .-..+.+
T Consensus 32 g~Lyvstg~~~---~s~v~~iD~~tg~v~~~i~l~~~~fg---eGi~~~g~~lyv~t~~--~~~v~viD~~--t~~v~~~ 101 (266)
T 2iwa_A 32 DTLFESTGLYG---RSSVRQVALQTGKVENIHKMDDSYFG---EGLTLLNEKLYQVVWL--KNIGFIYDRR--TLSNIKN 101 (266)
T ss_dssp TEEEEEECSTT---TCEEEEEETTTCCEEEEEECCTTCCE---EEEEEETTEEEEEETT--CSEEEEEETT--TTEEEEE
T ss_pred CeEEEECCCCC---CCEEEEEECCCCCEEEEEecCCCcce---EEEEEeCCEEEEEEec--CCEEEEEECC--CCcEEEE
Confidence 66776554321 45899999998765 45577654321 3455567789988874 5565555544 4566667
Q ss_pred ECCCCceeeeEEEeeCCc-EEEEEcCCeEEEEeCCCCc-EEEEEE
Q 048178 295 VGPFIGIFQPLLFWKKGA-FFVESNSSQLLLYEPGTGE-LRDFEL 337 (376)
Q Consensus 295 i~~~~~~~~~~~~~~~g~-i~~~~~~~~~~~yd~~t~~-~~~v~~ 337 (376)
+ +.. .....++..+|+ +|+....+.+..+|++|.+ .+.+.+
T Consensus 102 i-~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~V 144 (266)
T 2iwa_A 102 F-THQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNV 144 (266)
T ss_dssp E-ECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred E-ECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEE
Confidence 7 544 223455665655 7777767889999999976 445554
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.38 E-value=2.3 Score=42.64 Aligned_cols=192 Identities=7% Similarity=0.048 Sum_probs=98.9
Q ss_pred eEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEc
Q 048178 111 IVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNL 190 (376)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss 190 (376)
+++....++.+.|||..+++...+...... ... ...+.+.+..+.-.++... ....+.+++.
T Consensus 23 ~latg~~dg~I~vwd~~~~~~~~~~~l~~h--~~~-----V~~l~~s~~~~~~~l~s~s-----------~Dg~I~vwd~ 84 (753)
T 3jro_A 23 RLATCSSDKTIKIFEVEGETHKLIDTLTGH--EGP-----VWRVDWAHPKFGTILASCS-----------YDGKVLIWKE 84 (753)
T ss_dssp CEEEEETTTEEEEEEEETTEEEEEEEECCC--SSC-----EEEEEECCTTSCSEEEEEE-----------TTSCEEEEEE
T ss_pred eEEEEECCCcEEEEecCCCCCccceeccCC--cCc-----eEEEEecCCCCCCEEEEEe-----------CCCeEEEEEC
Confidence 333344456678898774443332221111 111 2356665543232333321 2457899999
Q ss_pred CCCceEeccccCccccCCCCeEEEC----ceEEEEeeecCCCCccEEEEEECCCceE-eeecCCCCCCCCCceeEEEe--
Q 048178 191 STNSWRNLKSIDYTMRLSSERTYFD----GAFYWLLKLENDNDNYVILSFHMAEEKF-QEIQGPCTLESSLDVTLGIY-- 263 (376)
Q Consensus 191 ~t~~W~~~~~~~~~~~~~~~~v~~~----G~lywl~~~~~~~~~~~i~~fD~~~e~~-~~i~lP~~~~~~~~~~l~~~-- 263 (376)
.++.|..+....... ....++.+. |.+...+.. ...|..+|+.+..- ....+..... .-..+...
T Consensus 85 ~~~~~~~~~~~~~h~-~~V~~v~~sp~~~~~~l~sgs~-----dg~I~vwdl~~~~~~~~~~~~~~~~--~v~~l~~~p~ 156 (753)
T 3jro_A 85 ENGRWSQIAVHAVHS-ASVNSVQWAPHEYGPLLLVASS-----DGKVSVVEFKENGTTSPIIIDAHAI--GVNSASWAPA 156 (753)
T ss_dssp ETTEEEEEEEECCCS-SCEEEEEECCGGGCSEEEEEET-----TSEEEEEECCSSSCCCCEEEECCSS--CEEEEEECCC
T ss_pred CCCcccccccccCCC-CCeEEEEECCCCCCCEEEEEeC-----CCcEEEEEeecCCCcceeEeecCCC--ceEEEEecCc
Confidence 998887665332111 111233332 444444433 33788888876521 1111111000 01122222
Q ss_pred ------------cCeEEEEEecCCCCEEEEEEeCC--CceeeEEEECCCCceeeeEEEeeC---CcEEEE-EcCCeEEEE
Q 048178 264 ------------DQSLSLLLLDTVDHCFKIWVMQK--KNWIKQSSVGPFIGIFQPLLFWKK---GAFFVE-SNSSQLLLY 325 (376)
Q Consensus 264 ------------~g~L~l~~~~~~~~~l~vW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~---g~i~~~-~~~~~~~~y 325 (376)
+|.+.+++.. +..+.+|.+.. ..+.....+.....-..-+++.++ |.+++. ..++.+.+|
T Consensus 157 ~~~~~~~~~~~~d~~~l~sgs~--dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iw 234 (753)
T 3jro_A 157 TIEEDGEHNGTKESRKFVTGGA--DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234 (753)
T ss_dssp C---------CGGGCCEEEEET--TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEE
T ss_pred ccccccccccCCCCCEEEEEEC--CCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEe
Confidence 3556666554 67899999977 557777766322222344566666 676655 567789999
Q ss_pred eCCCC
Q 048178 326 EPGTG 330 (376)
Q Consensus 326 d~~t~ 330 (376)
|++++
T Consensus 235 d~~~~ 239 (753)
T 3jro_A 235 TQDNE 239 (753)
T ss_dssp EESSS
T ss_pred cCCCC
Confidence 99886
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.89 E-value=3.3 Score=36.89 Aligned_cols=197 Identities=12% Similarity=0.057 Sum_probs=98.6
Q ss_pred eecceEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEE
Q 048178 107 LYCGIVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVT 186 (376)
Q Consensus 107 s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 186 (376)
+-++.++....+..+.|||..+++...........+... ...+.+.+.. .+ ++.. .....+.
T Consensus 91 s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~-----V~~v~~spdg-~~-l~sg-----------s~d~~i~ 152 (344)
T 4gqb_B 91 VGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDI-----VSTVSVLSSG-TQ-AVSG-----------SKDICIK 152 (344)
T ss_dssp ETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSC-----EEEEEECTTS-SE-EEEE-----------ETTSCEE
T ss_pred eCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCC-----EEEEEECCCC-CE-EEEE-----------eCCCeEE
Confidence 446777767777889999999887544322111111111 2345555432 32 2221 1245788
Q ss_pred EEEcCCCceE-eccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEe-eecCCCCCCCCCceeEEE
Q 048178 187 VYNLSTNSWR-NLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQ-EIQGPCTLESSLDVTLGI 262 (376)
Q Consensus 187 vyss~t~~W~-~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~-~i~lP~~~~~~~~~~l~~ 262 (376)
+++.+++.=. .+... . ....++.+ +|.-+.+.... ...|..+|+++.+-. .+..+.... ....+..
T Consensus 153 iwd~~~~~~~~~~~~h---~-~~V~~~~~~~~~~~~l~s~s~----D~~v~iwd~~~~~~~~~~~~~~~~~--~~~~~~~ 222 (344)
T 4gqb_B 153 VWDLAQQVVLSSYRAH---A-AQVTCVAASPHKDSVFLSCSE----DNRILLWDTRCPKPASQIGCSAPGY--LPTSLAW 222 (344)
T ss_dssp EEETTTTEEEEEECCC---S-SCEEEEEECSSCTTEEEEEET----TSCEEEEETTSSSCEEECC----CC--CEEEEEE
T ss_pred EEECCCCcEEEEEcCc---C-CceEEEEecCCCCCceeeecc----ccccccccccccceeeeeecceeec--cceeeee
Confidence 8888876321 11111 0 01112222 33322333332 236888898876432 222221111 1122333
Q ss_pred e--cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCc-EEEE-EcCCeEEEEeCCCCcEEEE
Q 048178 263 Y--DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGA-FFVE-SNSSQLLLYEPGTGELRDF 335 (376)
Q Consensus 263 ~--~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~-~~~~~~~~yd~~t~~~~~v 335 (376)
. ++.+.+.+.. +..+.||.+... ..+.++........-+++.++|. +++. ..++.+.+||.+++++.++
T Consensus 223 ~p~~~~~l~sg~~--dg~v~~wd~~~~--~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~ 295 (344)
T 4gqb_B 223 HPQQSEVFVFGDE--NGTVSLVDTKST--SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS 295 (344)
T ss_dssp CSSCTTEEEEEET--TSEEEEEESCC----CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEE
T ss_pred cCCCCcceEEecc--CCcEEEEECCCC--cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEE
Confidence 2 3446555554 789999988762 22333311222234456666664 5554 5678899999999976554
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=93.31 E-value=3.7 Score=36.18 Aligned_cols=142 Identities=8% Similarity=0.043 Sum_probs=77.9
Q ss_pred eEEEEEcCCCceEeccccCccccCCCCeE--EECceEEEEeeecCCCCccEEEEEECCCceEeeecC-CCCCCCCCceeE
Q 048178 184 LVTVYNLSTNSWRNLKSIDYTMRLSSERT--YFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQG-PCTLESSLDVTL 260 (376)
Q Consensus 184 ~~~vyss~t~~W~~~~~~~~~~~~~~~~v--~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~l-P~~~~~~~~~~l 260 (376)
.+..++..+++++.+..... . .....+ .-+|.+|.....+. ...|..||+.+.+.+.+.. +.... ....+
T Consensus 19 ~v~~~d~~tg~~~~~~~~~~-~-~~p~~~a~spdg~l~~~~~~~~---~~~v~~~~~~~g~~~~~~~~~~~~~--~p~~~ 91 (347)
T 3hfq_A 19 YQGTLDTTAKTLTNDGLLAA-T-QNPTYLALSAKDCLYSVDKEDD---EGGIAAWQIDGQTAHKLNTVVAPGT--PPAYV 91 (347)
T ss_dssp EEEEEETTTTEEEEEEEEEE-C-SCCCCEEECTTCEEEEEEEETT---EEEEEEEEEETTEEEEEEEEEEESC--CCSEE
T ss_pred EEEEEcCCCCeEEEeeeeec-c-CCcceEEEccCCeEEEEEecCC---CceEEEEEecCCcEEEeeeeecCCC--CCEEE
Confidence 34444555677765432211 1 111222 23788777665321 3478999998777665522 21111 11234
Q ss_pred EEe-cCe-EEEEEecCCCCEEEEEEeCC-CceeeEEEECCCCc----------eeeeEEEeeCCcEEEEEc-CCeEEEEe
Q 048178 261 GIY-DQS-LSLLLLDTVDHCFKIWVMQK-KNWIKQSSVGPFIG----------IFQPLLFWKKGAFFVESN-SSQLLLYE 326 (376)
Q Consensus 261 ~~~-~g~-L~l~~~~~~~~~l~vW~l~~-~~W~~~~~i~~~~~----------~~~~~~~~~~g~i~~~~~-~~~~~~yd 326 (376)
+.. +|+ |++.... ...+.+|.++. +....+..+ .... ...-+++.++|++++... .+.+..||
T Consensus 92 a~spdg~~l~~~~~~--~~~v~v~~~~~~g~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~ 168 (347)
T 3hfq_A 92 AVDEARQLVYSANYH--KGTAEVMKIAADGALTLTDTV-QHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYN 168 (347)
T ss_dssp EEETTTTEEEEEETT--TTEEEEEEECTTSCEEEEEEE-ECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEeCC--CCEEEEEEeCCCCCeeeccee-ecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEE
Confidence 443 566 5554433 68999999975 555555554 2211 022256677888666543 56799999
Q ss_pred CC-CCcEEEE
Q 048178 327 PG-TGELRDF 335 (376)
Q Consensus 327 ~~-t~~~~~v 335 (376)
++ ++++..+
T Consensus 169 ~~~~g~~~~~ 178 (347)
T 3hfq_A 169 VSDAGQLSEQ 178 (347)
T ss_dssp ECTTSCEEEE
T ss_pred ECCCCcEEEe
Confidence 98 6666654
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=92.91 E-value=5 Score=35.93 Aligned_cols=190 Identities=11% Similarity=0.057 Sum_probs=98.0
Q ss_pred eeeecceEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcce
Q 048178 105 KGLYCGIVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSL 184 (376)
Q Consensus 105 ~~s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 184 (376)
....+|.|.+......++.+|+.|++.+.--........ ..... +. +|+.. ...-.
T Consensus 99 ~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~-------~p~~~-----~~-~v~v~-----------~~~g~ 154 (376)
T 3q7m_A 99 VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALS-------RPVVS-----DG-LVLIH-----------TSNGQ 154 (376)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCS-------CCEEE-----TT-EEEEE-----------CTTSE
T ss_pred ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEc-------CCEEE-----CC-EEEEE-----------cCCCe
Confidence 445688888888778899999999885421111111000 00111 11 22221 11347
Q ss_pred EEEEEcCCC--ceEeccccCcc-ccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCce--Eeee-cCCCCCCC----
Q 048178 185 VTVYNLSTN--SWRNLKSIDYT-MRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEK--FQEI-QGPCTLES---- 254 (376)
Q Consensus 185 ~~vyss~t~--~W~~~~~~~~~-~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~--~~~i-~lP~~~~~---- 254 (376)
+..|+.+++ .|+.-...+.. .......+..+|.+|.-.. ...+.++|.++.+ |+.- ..|.....
T Consensus 155 l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~ 228 (376)
T 3q7m_A 155 LQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGD------NGRVSAVLMEQGQMIWQQRISQATGSTEIDRL 228 (376)
T ss_dssp EEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCT------TTEEEEEETTTCCEEEEEECCC----------
T ss_pred EEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcC------CCEEEEEECCCCcEEEEEecccCCCCcccccc
Confidence 788888777 48754322111 1112345666888776432 2379999987654 4332 22321110
Q ss_pred -CCceeEEEecCeEEEEEecCCCCEEEEEEeCC--CceeeEEEECCCCceeeeEEEeeCCcEEEEEcCCeEEEEeCCCCc
Q 048178 255 -SLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQK--KNWIKQSSVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGE 331 (376)
Q Consensus 255 -~~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~yd~~t~~ 331 (376)
.........+|.+++... ...+..+..+. ..|... ......+ . ..++.+++...++.++.+|+++++
T Consensus 229 ~~~~~~p~~~~~~v~~~~~---~g~l~~~d~~tG~~~w~~~-----~~~~~~~-~-~~~~~l~~~~~~g~l~~~d~~tG~ 298 (376)
T 3q7m_A 229 SDVDTTPVVVNGVVFALAY---NGNLTALDLRSGQIMWKRE-----LGSVNDF-I-VDGNRIYLVDQNDRVMALTIDGGV 298 (376)
T ss_dssp -CCCCCCEEETTEEEEECT---TSCEEEEETTTCCEEEEEC-----CCCEEEE-E-EETTEEEEEETTCCEEEEETTTCC
T ss_pred cccCCCcEEECCEEEEEec---CcEEEEEECCCCcEEeecc-----CCCCCCc-e-EECCEEEEEcCCCeEEEEECCCCc
Confidence 011222344666666543 33455555444 335432 2212222 2 236778888888889999999987
Q ss_pred EEE
Q 048178 332 LRD 334 (376)
Q Consensus 332 ~~~ 334 (376)
...
T Consensus 299 ~~w 301 (376)
T 3q7m_A 299 TLW 301 (376)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=92.32 E-value=4.9 Score=34.47 Aligned_cols=197 Identities=10% Similarity=0.069 Sum_probs=106.2
Q ss_pred eEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEc
Q 048178 111 IVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNL 190 (376)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss 190 (376)
++........++.+||.++ ...+..+.. . ..++.+|+... ++.. . .....+.+|+.
T Consensus 42 l~~~~~~~~~i~~~~~~~~-~~~~~~~~~-----~-----~~~l~~~~dg~---l~v~-~---------~~~~~i~~~d~ 97 (296)
T 3e5z_A 42 VIFSDVRQNRTWAWSDDGQ-LSPEMHPSH-----H-----QNGHCLNKQGH---LIAC-S---------HGLRRLERQRE 97 (296)
T ss_dssp EEEEEGGGTEEEEEETTSC-EEEEESSCS-----S-----EEEEEECTTCC---EEEE-E---------TTTTEEEEECS
T ss_pred EEEEeCCCCEEEEEECCCC-eEEEECCCC-----C-----cceeeECCCCc---EEEE-e---------cCCCeEEEEcC
Confidence 4444445677899999998 555433211 1 24677776443 2222 1 12457888888
Q ss_pred CCCceEeccccCcccc-CCCCeEEE--CceEEEEeee-c-----------CCCCccEEEEEECCCceEeeecCCCCCCCC
Q 048178 191 STNSWRNLKSIDYTMR-LSSERTYF--DGAFYWLLKL-E-----------NDNDNYVILSFHMAEEKFQEIQGPCTLESS 255 (376)
Q Consensus 191 ~t~~W~~~~~~~~~~~-~~~~~v~~--~G~lywl~~~-~-----------~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~ 255 (376)
.+++.+.+........ .....+.+ +|.+|+.... + .......|..+|.. .+...+.-...
T Consensus 98 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~---- 172 (296)
T 3e5z_A 98 PGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRV---- 172 (296)
T ss_dssp TTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCS----
T ss_pred CCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCC----
Confidence 8887765532111111 11122333 6777654210 0 00012378889887 44544421111
Q ss_pred CceeEEEe-cCeEEEEEecCCCCEEEEEEeCC-Cce-eeEEEECCCCceeeeEEEeeCCcEEEEEcCCeEEEEeCCCCcE
Q 048178 256 LDVTLGIY-DQSLSLLLLDTVDHCFKIWVMQK-KNW-IKQSSVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGEL 332 (376)
Q Consensus 256 ~~~~l~~~-~g~L~l~~~~~~~~~l~vW~l~~-~~W-~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~yd~~t~~~ 332 (376)
....++.. +|++. +.. .....+.+|.++. +.. .....+........-+++..+|.+++.. .+.+..||++++.+
T Consensus 173 ~~~gi~~s~dg~~l-v~~-~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~g~~~ 249 (296)
T 3e5z_A 173 KPNGLAFLPSGNLL-VSD-TGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPDGDEL 249 (296)
T ss_dssp SEEEEEECTTSCEE-EEE-TTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTTSCEE
T ss_pred CCccEEECCCCCEE-EEe-CCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCCCCEE
Confidence 11234433 56655 333 3367888898874 555 3332221111112235666789999888 77899999998888
Q ss_pred EEEEEec
Q 048178 333 RDFELEC 339 (376)
Q Consensus 333 ~~v~~~~ 339 (376)
+.+....
T Consensus 250 ~~~~~~~ 256 (296)
T 3e5z_A 250 GRVLTPQ 256 (296)
T ss_dssp EEEECSS
T ss_pred EEEECCC
Confidence 8776544
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=92.11 E-value=5.9 Score=34.88 Aligned_cols=202 Identities=9% Similarity=-0.038 Sum_probs=105.6
Q ss_pred eeeeeecceEEEee-cCCeEEEEecCcccee-ecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCC
Q 048178 103 SFKGLYCGIVFIEG-LNNRITLWNIATRESV-TLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSC 180 (376)
Q Consensus 103 ~~~~s~~Gll~~~~-~~~~~~V~NP~T~~~~-~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~ 180 (376)
.+..+.+|.+.+.+ ....+.++|+.|++.. .++.......... ..++.++ +..-.|.- . .
T Consensus 88 ~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~-----p~~i~~~---~~~lyv~~-~---------~ 149 (328)
T 3dsm_A 88 YIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGS-----TEQMVQY---GKYVYVNC-W---------S 149 (328)
T ss_dssp EEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCB-----CCCEEEE---TTEEEEEE-C---------T
T ss_pred EEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCC-----cceEEEE---CCEEEEEc-C---------C
Confidence 34445678887777 5678999999998855 3443321000000 1123332 23222221 0 1
Q ss_pred CcceEEEEEcCCCceEe-ccccCccccCCCCeEE--ECceEEEEeeecCCCC-----ccEEEEEECCCceEe-eecCCCC
Q 048178 181 PFSLVTVYNLSTNSWRN-LKSIDYTMRLSSERTY--FDGAFYWLLKLENDND-----NYVILSFHMAEEKFQ-EIQGPCT 251 (376)
Q Consensus 181 ~~~~~~vyss~t~~W~~-~~~~~~~~~~~~~~v~--~~G~lywl~~~~~~~~-----~~~i~~fD~~~e~~~-~i~lP~~ 251 (376)
....+.+++.++++... ++.. ..+ ..+. -+|.+|..+....... ...|..+|.++.+.. .+.+|..
T Consensus 150 ~~~~v~viD~~t~~~~~~i~~g--~~p---~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g 224 (328)
T 3dsm_A 150 YQNRILKIDTETDKVVDELTIG--IQP---TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLG 224 (328)
T ss_dssp TCCEEEEEETTTTEEEEEEECS--SCB---CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTT
T ss_pred CCCEEEEEECCCCeEEEEEEcC--CCc---cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCC
Confidence 14588999999886532 2211 111 2222 3588766554321000 147999999988765 4577654
Q ss_pred CCCCCceeEEEe-cCe-EEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeee--EEEee-CCcEEEEE-----cCCe
Q 048178 252 LESSLDVTLGIY-DQS-LSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQP--LLFWK-KGAFFVES-----NSSQ 321 (376)
Q Consensus 252 ~~~~~~~~l~~~-~g~-L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~--~~~~~-~g~i~~~~-----~~~~ 321 (376)
.. ...++.. +|+ |+++.. .+.+|..+..+......+ +.. ...| +++.+ +|.+|+.. ..+.
T Consensus 225 ~~---p~~la~~~d~~~lyv~~~-----~v~~~d~~t~~~~~~~~~-~~~-~~~p~gi~vdp~~g~lyva~~~~y~~~~~ 294 (328)
T 3dsm_A 225 DW---PSEVQLNGTRDTLYWINN-----DIWRMPVEADRVPVRPFL-EFR-DTKYYGLTVNPNNGEVYVADAIDYQQQGI 294 (328)
T ss_dssp CC---CEEEEECTTSCEEEEESS-----SEEEEETTCSSCCSSCSB-CCC-SSCEEEEEECTTTCCEEEEECTTSSSEEE
T ss_pred CC---ceeEEEecCCCEEEEEcc-----EEEEEECCCCceeeeeee-cCC-CCceEEEEEcCCCCeEEEEcccccccCCE
Confidence 22 1455555 355 554321 344444443322111112 111 1234 45554 67798886 3567
Q ss_pred EEEEeCCCCcEEEEEE
Q 048178 322 LLLYEPGTGELRDFEL 337 (376)
Q Consensus 322 ~~~yd~~t~~~~~v~~ 337 (376)
+..||++.+.++++..
T Consensus 295 V~v~d~~g~~~~~i~~ 310 (328)
T 3dsm_A 295 VYRYSPQGKLIDEFYV 310 (328)
T ss_dssp EEEECTTCCEEEEEEE
T ss_pred EEEECCCCCEEEEEEe
Confidence 9999999777777765
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=92.03 E-value=1.8 Score=37.23 Aligned_cols=111 Identities=10% Similarity=0.041 Sum_probs=69.2
Q ss_pred eEE-ECceEEEEeeecCCCCccEEEEEECCCceE-eeecCCCCCCCCCceeEEEecCeEEEEEecCCCCEEEEEEeCCCc
Q 048178 211 RTY-FDGAFYWLLKLENDNDNYVILSFHMAEEKF-QEIQGPCTLESSLDVTLGIYDQSLSLLLLDTVDHCFKIWVMQKKN 288 (376)
Q Consensus 211 ~v~-~~G~lywl~~~~~~~~~~~i~~fD~~~e~~-~~i~lP~~~~~~~~~~l~~~~g~L~l~~~~~~~~~l~vW~l~~~~ 288 (376)
++. .++.+|--+... ..|..+|+++.+. ..+ +|+... .-.++..+++|+++... ...+-++..+.
T Consensus 59 GL~~~~~~Ly~stG~~-----g~v~~iD~~Tgkv~~~~-l~~~~F---geGit~~g~~Ly~ltw~--~~~v~V~D~~T-- 125 (268)
T 3nok_A 59 GLVFHQGHFFESTGHQ-----GTLRQLSLESAQPVWME-RLGNIF---AEGLASDGERLYQLTWT--EGLLFTWSGMP-- 125 (268)
T ss_dssp EEEEETTEEEEEETTT-----TEEEECCSSCSSCSEEE-ECTTCC---EEEEEECSSCEEEEESS--SCEEEEEETTT--
T ss_pred eEEEECCEEEEEcCCC-----CEEEEEECCCCcEEeEE-CCCCcc---eeEEEEeCCEEEEEEcc--CCEEEEEECCc--
Confidence 443 456666555442 2599999998765 445 665321 13466677889999875 55555555544
Q ss_pred eeeEEEECCCCceeeeEEEeeCCc-EEEEEcCCeEEEEeCCCCcEE-EEEE
Q 048178 289 WIKQSSVGPFIGIFQPLLFWKKGA-FFVESNSSQLLLYEPGTGELR-DFEL 337 (376)
Q Consensus 289 W~~~~~i~~~~~~~~~~~~~~~g~-i~~~~~~~~~~~yd~~t~~~~-~v~~ 337 (376)
-.++.++ +... ...++..+|+ +++....+.+..+|++|.+.. .|.+
T Consensus 126 l~~~~ti-~~~~--eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V 173 (268)
T 3nok_A 126 PQRERTT-RYSG--EGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQV 173 (268)
T ss_dssp TEEEEEE-ECSS--CCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred CcEEEEE-eCCC--ceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEe
Confidence 5566666 5442 2345555555 666666788999999997644 4554
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=91.47 E-value=7.9 Score=35.07 Aligned_cols=192 Identities=11% Similarity=0.099 Sum_probs=101.3
Q ss_pred eecceEEEeec-CCeEEEEecCccceee-cCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcce
Q 048178 107 LYCGIVFIEGL-NNRITLWNIATRESVT-LPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSL 184 (376)
Q Consensus 107 s~~Gll~~~~~-~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 184 (376)
+.+|-+++... ...+.+||+.+++... ++... .. ...+.+++..+ + ++... .....
T Consensus 178 ~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~-----~~-----~~~~~~~~~~~-~-l~~~~----------~~~~~ 235 (433)
T 3bws_A 178 PEHNELWVSQMQANAVHVFDLKTLAYKATVDLTG-----KW-----SKILLYDPIRD-L-VYCSN----------WISED 235 (433)
T ss_dssp GGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSS-----SS-----EEEEEEETTTT-E-EEEEE----------TTTTE
T ss_pred cCCCEEEEEECCCCEEEEEECCCceEEEEEcCCC-----CC-----eeEEEEcCCCC-E-EEEEe----------cCCCc
Confidence 44666655543 5788999998876543 33111 01 23566665433 2 22221 12457
Q ss_pred EEEEEcCCCceEeccccCccccCCCCeEEE--CceEEEEeeecCCC---CccEEEEEECCCceEeee-cCCCCCCCCCce
Q 048178 185 VTVYNLSTNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDN---DNYVILSFHMAEEKFQEI-QGPCTLESSLDV 258 (376)
Q Consensus 185 ~~vyss~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~---~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~ 258 (376)
+.+|+.+++.....-... .. ..++.+ +|...+.+....+. ....|..+|+.+.+.... ..+.. ..
T Consensus 236 i~~~d~~~~~~~~~~~~~--~~--~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~-----~~ 306 (433)
T 3bws_A 236 ISVIDRKTKLEIRKTDKI--GL--PRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGN-----KR 306 (433)
T ss_dssp EEEEETTTTEEEEECCCC--SE--EEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEEC-----EE
T ss_pred EEEEECCCCcEEEEecCC--CC--ceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCC-----cc
Confidence 889998887543221111 00 123333 56555555432110 134788999987755333 22211 12
Q ss_pred eEEEe-cCe-EEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEE-EEEc---------------CC
Q 048178 259 TLGIY-DQS-LSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFF-VESN---------------SS 320 (376)
Q Consensus 259 ~l~~~-~g~-L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~-~~~~---------------~~ 320 (376)
.+... +|+ +++.... ...+.+|.++.. ..+..+ +...-..-+++.++|..+ +... ++
T Consensus 307 ~~~~~~~g~~l~~~~~~--~~~v~v~d~~~~--~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg 381 (433)
T 3bws_A 307 HIVSGNTENKIYVSDMC--CSKIEVYDLKEK--KVQKSI-PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLG 381 (433)
T ss_dssp EEEECSSTTEEEEEETT--TTEEEEEETTTT--EEEEEE-ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCC
T ss_pred eEEECCCCCEEEEEecC--CCEEEEEECCCC--cEEEEe-cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccce
Confidence 23322 454 5555444 789999998863 334444 232223446667778744 4433 24
Q ss_pred eEEEEeCCCCcEEE
Q 048178 321 QLLLYEPGTGELRD 334 (376)
Q Consensus 321 ~~~~yd~~t~~~~~ 334 (376)
.+..||+++++...
T Consensus 382 ~v~~~d~~~~~~~~ 395 (433)
T 3bws_A 382 KVYVIDTTTDTVKE 395 (433)
T ss_dssp EEEEEETTTTEEEE
T ss_pred EEEEEECCCCcEEE
Confidence 89999999887554
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=91.31 E-value=7.6 Score=34.59 Aligned_cols=187 Identities=12% Similarity=0.106 Sum_probs=99.8
Q ss_pred eecc-eEEEee-cCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcce
Q 048178 107 LYCG-IVFIEG-LNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSL 184 (376)
Q Consensus 107 s~~G-ll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 184 (376)
+.+| .+++.. ....+.+||+.+++....-.... . ...+.+++..+ +-++.- .....
T Consensus 40 s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~----~------v~~~~~spdg~-~l~~~~-----------~~~~~ 97 (391)
T 1l0q_A 40 SPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS----S------PQGVAVSPDGK-QVYVTN-----------MASST 97 (391)
T ss_dssp CTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS----S------EEEEEECTTSS-EEEEEE-----------TTTTE
T ss_pred CCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC----C------ccceEECCCCC-EEEEEE-----------CCCCE
Confidence 3444 343343 46778999999988655322111 1 23566665433 222221 22457
Q ss_pred EEEEEcCCCceEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEeee-cCCCCCCCCCceeEE
Q 048178 185 VTVYNLSTNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCTLESSLDVTLG 261 (376)
Q Consensus 185 ~~vyss~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~ 261 (376)
+.+|+..++.-...-... ....++.+ +|...++.... ...|..+|+.+.+.... ..... ...+.
T Consensus 98 v~v~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~----~~~v~~~d~~~~~~~~~~~~~~~-----~~~~~ 164 (391)
T 1l0q_A 98 LSVIDTTSNTVAGTVKTG----KSPLGLALSPDGKKLYVTNNG----DKTVSVINTVTKAVINTVSVGRS-----PKGIA 164 (391)
T ss_dssp EEEEETTTTEEEEEEECS----SSEEEEEECTTSSEEEEEETT----TTEEEEEETTTTEEEEEEECCSS-----EEEEE
T ss_pred EEEEECCCCeEEEEEeCC----CCcceEEECCCCCEEEEEeCC----CCEEEEEECCCCcEEEEEecCCC-----cceEE
Confidence 899999887543221111 01123333 46544344333 34899999988766443 32211 12333
Q ss_pred Ee-cCe-EEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEE-EEE---cCCeEEEEeCCCCcEE
Q 048178 262 IY-DQS-LSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFF-VES---NSSQLLLYEPGTGELR 333 (376)
Q Consensus 262 ~~-~g~-L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~-~~~---~~~~~~~yd~~t~~~~ 333 (376)
.. +|+ |++.... ...+.+|.++..+ .+..+ +......-+++..+|+.+ +.. .++.+..||+++++..
T Consensus 165 ~~~dg~~l~~~~~~--~~~v~~~d~~~~~--~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~ 237 (391)
T 1l0q_A 165 VTPDGTKVYVANFD--SMSISVIDTVTNS--VIDTV-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT 237 (391)
T ss_dssp ECTTSSEEEEEETT--TTEEEEEETTTTE--EEEEE-ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE
T ss_pred ECCCCCEEEEEeCC--CCEEEEEECCCCe--EEEEE-ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE
Confidence 32 454 4444433 6889999887743 33344 232223345666677744 444 4688999999987643
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=91.12 E-value=8.9 Score=35.03 Aligned_cols=185 Identities=8% Similarity=0.043 Sum_probs=99.2
Q ss_pred CeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceEec
Q 048178 119 NRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRNL 198 (376)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~ 198 (376)
..+++||..|++...+...+.. ...+.+.|.. .+ ++.... . .....+.+++.+++..+.+
T Consensus 203 ~~i~~~d~~tg~~~~l~~~~~~----------~~~~~~spdg-~~-la~~~~---~-----~g~~~i~~~d~~~~~~~~l 262 (415)
T 2hqs_A 203 SALVIQTLANGAVRQVASFPRH----------NGAPAFSPDG-SK-LAFALS---K-----TGSLNLYVMDLASGQIRQV 262 (415)
T ss_dssp CEEEEEETTTCCEEEEECCSSC----------EEEEEECTTS-SE-EEEEEC---T-----TSSCEEEEEETTTCCEEEC
T ss_pred cEEEEEECCCCcEEEeecCCCc----------ccCEEEcCCC-CE-EEEEEe---c-----CCCceEEEEECCCCCEEeC
Confidence 4789999999988766543211 2345555433 32 222211 1 2246788899988877665
Q ss_pred cccCccccCCCCeEEE--Cce-EEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEE-ecCe-EEEEEec
Q 048178 199 KSIDYTMRLSSERTYF--DGA-FYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGI-YDQS-LSLLLLD 273 (376)
Q Consensus 199 ~~~~~~~~~~~~~v~~--~G~-lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~-~~g~-L~l~~~~ 273 (376)
..... ....+.+ +|. +++....+. ...|..+|+.+.....+..... ....+.. -+|+ |+.....
T Consensus 263 ~~~~~----~~~~~~~spdg~~l~~~s~~~g---~~~i~~~d~~~~~~~~l~~~~~----~~~~~~~spdG~~l~~~~~~ 331 (415)
T 2hqs_A 263 TDGRS----NNTEPTWFPDSQNLAFTSDQAG---RPQVYKVNINGGAPQRITWEGS----QNQDADVSSDGKFMVMVSSN 331 (415)
T ss_dssp CCCSS----CEEEEEECTTSSEEEEEECTTS---SCEEEEEETTSSCCEECCCSSS----EEEEEEECTTSSEEEEEEEC
T ss_pred cCCCC----cccceEECCCCCEEEEEECCCC---CcEEEEEECCCCCEEEEecCCC----cccCeEECCCCCEEEEEECc
Confidence 43211 1112222 565 443332221 3478888988776444322111 1112222 2666 4444443
Q ss_pred CCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEE-EEEcCC---eEEEEeCCCCcEEEEEEe
Q 048178 274 TVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFF-VESNSS---QLLLYEPGTGELRDFELE 338 (376)
Q Consensus 274 ~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~-~~~~~~---~~~~yd~~t~~~~~v~~~ 338 (376)
.....+.+|.++.++... +.... ....+++.++|..+ +...++ .++.+|++++..+++.-.
T Consensus 332 ~g~~~i~~~d~~~~~~~~---l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~ 396 (415)
T 2hqs_A 332 GGQQHIAKQDLATGGVQV---LSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPAT 396 (415)
T ss_dssp SSCEEEEEEETTTCCEEE---CCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCS
T ss_pred CCceEEEEEECCCCCEEE---ecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCC
Confidence 334678888887754432 31111 23335667788744 444333 699999999988887543
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=91.10 E-value=6.9 Score=33.74 Aligned_cols=207 Identities=11% Similarity=0.093 Sum_probs=106.5
Q ss_pred cceEEEee-cCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEE
Q 048178 109 CGIVFIEG-LNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTV 187 (376)
Q Consensus 109 ~Gll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~v 187 (376)
+|-|+..+ ....++.+||.+++...+..+. . ..++.+++..+ -+++. ...+.+
T Consensus 24 ~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~------~-----~~~i~~~~dG~--l~v~~-------------~~~l~~ 77 (297)
T 3g4e_A 24 SNSLLFVDIPAKKVCRWDSFTKQVQRVTMDA------P-----VSSVALRQSGG--YVATI-------------GTKFCA 77 (297)
T ss_dssp TTEEEEEETTTTEEEEEETTTCCEEEEECSS------C-----EEEEEEBTTSS--EEEEE-------------TTEEEE
T ss_pred CCEEEEEECCCCEEEEEECCCCcEEEEeCCC------c-----eEEEEECCCCC--EEEEE-------------CCeEEE
Confidence 45554444 4667899999998765543221 0 23566776544 22221 237888
Q ss_pred EEcCCCceEeccccCcccc-CCCCeEEE--CceEEEEeeecCC------CCccEEEEEECCCceEeeecCCCCCCCCCce
Q 048178 188 YNLSTNSWRNLKSIDYTMR-LSSERTYF--DGAFYWLLKLEND------NDNYVILSFHMAEEKFQEIQGPCTLESSLDV 258 (376)
Q Consensus 188 yss~t~~W~~~~~~~~~~~-~~~~~v~~--~G~lywl~~~~~~------~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~ 258 (376)
|+.+++.++.+.......+ .....+.+ +|.+|+-...... .....|..+|.....-....- .. ...
T Consensus 78 ~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~---~~--~pn 152 (297)
T 3g4e_A 78 LNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ---VD--ISN 152 (297)
T ss_dssp EETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE---ES--BEE
T ss_pred EECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeec---cc--ccc
Confidence 9999888876653321111 11112333 6886654432210 013468888876432221110 00 112
Q ss_pred eEEEe-cCe-EEEEEecCCCCEEEEEEeC--CCceeeE---EEECCCCceeeeEEEeeCCcEEEEE-cCCeEEEEeCCCC
Q 048178 259 TLGIY-DQS-LSLLLLDTVDHCFKIWVMQ--KKNWIKQ---SSVGPFIGIFQPLLFWKKGAFFVES-NSSQLLLYEPGTG 330 (376)
Q Consensus 259 ~l~~~-~g~-L~l~~~~~~~~~l~vW~l~--~~~W~~~---~~i~~~~~~~~~~~~~~~g~i~~~~-~~~~~~~yd~~t~ 330 (376)
.++.. +|+ |+++... ...+.+|.++ ++..... ..+........-+++..+|.|++.. ..+.+..||++++
T Consensus 153 gi~~spdg~~lyv~~~~--~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG 230 (297)
T 3g4e_A 153 GLDWSLDHKIFYYIDSL--SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG 230 (297)
T ss_dssp EEEECTTSCEEEEEEGG--GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC
T ss_pred ceEEcCCCCEEEEecCC--CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc
Confidence 33433 454 6666554 5677777775 2443321 2221111112224445578899875 4567999999965
Q ss_pred c-EEEEEEecceEEEEEee
Q 048178 331 E-LRDFELECCWFSIYIYT 348 (376)
Q Consensus 331 ~-~~~v~~~~~~~~~~~y~ 348 (376)
+ +..+......+..+.|-
T Consensus 231 ~~~~~i~~p~~~~t~~~f~ 249 (297)
T 3g4e_A 231 KRLQTVKLPVDKTTSCCFG 249 (297)
T ss_dssp CEEEEEECSSSBEEEEEEE
T ss_pred eEEEEEECCCCCceEEEEe
Confidence 5 55666543334444443
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=90.72 E-value=8.7 Score=34.21 Aligned_cols=184 Identities=13% Similarity=0.116 Sum_probs=98.2
Q ss_pred eEEEee-cCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEE
Q 048178 111 IVFIEG-LNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYN 189 (376)
Q Consensus 111 ll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vys 189 (376)
.+++.. ....+.+||..+++....-... .. ...+.+++.. .+-++.- .....+.+++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~----~~------~~~~~~s~dg-~~l~~~~-----------~~d~~i~v~d 60 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVG----SN------PMGAVISPDG-TKVYVAN-----------AHSNDVSIID 60 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECS----SS------EEEEEECTTS-SEEEEEE-----------GGGTEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecC----CC------cceEEECCCC-CEEEEEC-----------CCCCeEEEEE
Confidence 343443 3567899999998765422111 11 1345555433 2222221 1245788999
Q ss_pred cCCCceEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEeee-cCCCCCCCCCceeEEEe-cC
Q 048178 190 LSTNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCTLESSLDVTLGIY-DQ 265 (376)
Q Consensus 190 s~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~~-~g 265 (376)
..+++-...-.... ...++.+ +|..-+++... ...|..+|+++.+.... ..... ...+... +|
T Consensus 61 ~~~~~~~~~~~~~~----~v~~~~~spdg~~l~~~~~~----~~~v~v~d~~~~~~~~~~~~~~~-----~~~~~~s~dg 127 (391)
T 1l0q_A 61 TATNNVIATVPAGS----SPQGVAVSPDGKQVYVTNMA----SSTLSVIDTTSNTVAGTVKTGKS-----PLGLALSPDG 127 (391)
T ss_dssp TTTTEEEEEEECSS----SEEEEEECTTSSEEEEEETT----TTEEEEEETTTTEEEEEEECSSS-----EEEEEECTTS
T ss_pred CCCCeEEEEEECCC----CccceEECCCCCEEEEEECC----CCEEEEEECCCCeEEEEEeCCCC-----cceEEECCCC
Confidence 88875432211111 1123333 46544344332 34799999998765433 32211 1233333 55
Q ss_pred e-EEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEE-EEE-cCCeEEEEeCCCCcEEE
Q 048178 266 S-LSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFF-VES-NSSQLLLYEPGTGELRD 334 (376)
Q Consensus 266 ~-L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~-~~~-~~~~~~~yd~~t~~~~~ 334 (376)
+ |++.... ...+.+|.++..+....... ..-...+++..+|+.+ +.. .++.+..||+++++...
T Consensus 128 ~~l~~~~~~--~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 194 (391)
T 1l0q_A 128 KKLYVTNNG--DKTVSVINTVTKAVINTVSV---GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVID 194 (391)
T ss_dssp SEEEEEETT--TTEEEEEETTTTEEEEEEEC---CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CEEEEEeCC--CCEEEEEECCCCcEEEEEec---CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEE
Confidence 5 4444433 77999999887554444333 1112445666677644 553 46789999999987554
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=90.55 E-value=10 Score=34.70 Aligned_cols=57 Identities=12% Similarity=0.120 Sum_probs=33.1
Q ss_pred CCEEEEEEeCCCceeeEEEEC-CC-CceeeeEEEeeCCcEEEEEcCCeEEEEeCCCCcEEE
Q 048178 276 DHCFKIWVMQKKNWIKQSSVG-PF-IGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGELRD 334 (376)
Q Consensus 276 ~~~l~vW~l~~~~W~~~~~i~-~~-~~~~~~~~~~~~g~i~~~~~~~~~~~yd~~t~~~~~ 334 (376)
...+.||....++- +..+. +. ..+....++.++|.++....++.+.++|+++++.+|
T Consensus 377 ~~~i~iwd~~~g~~--~~~l~~~~~~~v~s~~~fspdg~~lasg~d~~i~iW~~~~gk~rK 435 (435)
T 4e54_B 377 LRTIDVFDGNSGKM--MCQLYDPESSGISSLNEFNPMGDTLASAMGYHILIWSQQEARTRK 435 (435)
T ss_dssp CCCEEEECSSSCCE--EEEECCSSCCCCCCEEEECTTSSCEEEECSSEEEECCCC------
T ss_pred CCEEEEEECCCCcE--EEEEeCCCCCcEEEEEEECCCCCEEEEEcCCcEEEEECCcCeeeC
Confidence 45789998776432 23331 21 112334466778998888778889999999987654
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=90.09 E-value=8.2 Score=35.32 Aligned_cols=191 Identities=13% Similarity=0.080 Sum_probs=93.4
Q ss_pred eEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEc
Q 048178 111 IVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNL 190 (376)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss 190 (376)
+|.....+..+.|||..+++...+-.... +... ...+.+.|..+.+-+ .. .....+.+++.
T Consensus 134 ~lasGs~dg~i~lWd~~~~~~~~~~~~~g--H~~~-----V~~l~f~p~~~~~l~-s~-----------s~D~~v~iwd~ 194 (435)
T 4e54_B 134 TVAVGSKGGDIMLWNFGIKDKPTFIKGIG--AGGS-----ITGLKFNPLNTNQFY-AS-----------SMEGTTRLQDF 194 (435)
T ss_dssp CEEEEETTSCEEEECSSCCSCCEEECCCS--SSCC-----CCEEEECSSCTTEEE-EE-----------CSSSCEEEEET
T ss_pred EEEEEeCCCEEEEEECCCCCceeEEEccC--CCCC-----EEEEEEeCCCCCEEE-EE-----------eCCCEEEEeec
Confidence 55555667788999998877543222111 1111 235666665555422 21 12456888888
Q ss_pred CCCceEeccccCccccCCCCeEE--ECceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEEe-cCe-
Q 048178 191 STNSWRNLKSIDYTMRLSSERTY--FDGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIY-DQS- 266 (376)
Q Consensus 191 ~t~~W~~~~~~~~~~~~~~~~v~--~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~-~g~- 266 (376)
+++.-+.+...... .....++. -+|.+...+.. ...|..+|++......+.. . ...-..+... ++.
T Consensus 195 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~g~~-----dg~i~~wd~~~~~~~~~~~--h--~~~v~~v~~~p~~~~ 264 (435)
T 4e54_B 195 KGNILRVFASSDTI-NIWFCSLDVSASSRMVVTGDN-----VGNVILLNMDGKELWNLRM--H--KKKVTHVALNPCCDW 264 (435)
T ss_dssp TSCEEEEEECCSSC-SCCCCCEEEETTTTEEEEECS-----SSBEEEEESSSCBCCCSBC--C--SSCEEEEEECTTCSS
T ss_pred cCCceeEEeccCCC-CccEEEEEECCCCCEEEEEeC-----CCcEeeeccCcceeEEEec--c--cceEEeeeecCCCce
Confidence 87765544322111 11111222 24554444433 2368888887653322211 0 1011222222 444
Q ss_pred EEEEEecCCCCEEEEEEeCCCceeeEEE-ECCCCceeeeEEEeeCCcEEEE-EcCCeEEEEeCCCCcE
Q 048178 267 LSLLLLDTVDHCFKIWVMQKKNWIKQSS-VGPFIGIFQPLLFWKKGAFFVE-SNSSQLLLYEPGTGEL 332 (376)
Q Consensus 267 L~l~~~~~~~~~l~vW~l~~~~W~~~~~-i~~~~~~~~~~~~~~~g~i~~~-~~~~~~~~yd~~t~~~ 332 (376)
+++.+.. +..+.||.+...+-..... ......-..-+++..+|..++. ..++.+.+||.++...
T Consensus 265 ~~~s~s~--d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~ 330 (435)
T 4e54_B 265 FLATASV--DQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDC 330 (435)
T ss_dssp EEEEEET--TSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSS
T ss_pred EEEEecC--cceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCcc
Confidence 4444444 6789999887621111100 0011111222344567776654 5677899999987643
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=89.83 E-value=8.9 Score=32.97 Aligned_cols=196 Identities=11% Similarity=0.094 Sum_probs=99.1
Q ss_pred eecceEEEeecCCeEEEEecCccceee-cCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceE
Q 048178 107 LYCGIVFIEGLNNRITLWNIATRESVT-LPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLV 185 (376)
Q Consensus 107 s~~Gll~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 185 (376)
+.+|-++.......+.|||..+++... +.......... ....+.+.+.. .+- +... ....+
T Consensus 60 ~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~-~~l-~~~~-----------~d~~i 121 (337)
T 1gxr_A 60 SNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDN-----YIRSCKLLPDG-CTL-IVGG-----------EASTL 121 (337)
T ss_dssp CSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTS-----BEEEEEECTTS-SEE-EEEE-----------SSSEE
T ss_pred ecCCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCC-----cEEEEEEcCCC-CEE-EEEc-----------CCCcE
Confidence 445544444446788999988765321 11100000111 12356666532 322 2221 24578
Q ss_pred EEEEcCCCceEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEee-ecCCCCCCCCCceeEEE
Q 048178 186 TVYNLSTNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQE-IQGPCTLESSLDVTLGI 262 (376)
Q Consensus 186 ~vyss~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~-i~lP~~~~~~~~~~l~~ 262 (376)
.+|+.+++..+......... .....+.+ +|.....+.. ...|..+|+++.+... +..... .-..+..
T Consensus 122 ~~~d~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~-----dg~v~~~d~~~~~~~~~~~~~~~----~i~~~~~ 191 (337)
T 1gxr_A 122 SIWDLAAPTPRIKAELTSSA-PACYALAISPDSKVCFSCCS-----DGNIAVWDLHNQTLVRQFQGHTD----GASCIDI 191 (337)
T ss_dssp EEEECCCC--EEEEEEECSS-SCEEEEEECTTSSEEEEEET-----TSCEEEEETTTTEEEEEECCCSS----CEEEEEE
T ss_pred EEEECCCCCcceeeecccCC-CceEEEEECCCCCEEEEEeC-----CCcEEEEeCCCCceeeeeecccC----ceEEEEE
Confidence 99999888754432221110 01112222 4554444433 2368889998765433 222111 1123333
Q ss_pred e-cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEE-EEcCCeEEEEeCCCCcEEEE
Q 048178 263 Y-DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFV-ESNSSQLLLYEPGTGELRDF 335 (376)
Q Consensus 263 ~-~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~-~~~~~~~~~yd~~t~~~~~v 335 (376)
. +|...++... +..+.+|.++..+ .+..+ ....-..-+++.++|..++ ...++.+..||+++++...+
T Consensus 192 ~~~~~~l~~~~~--dg~i~~~d~~~~~--~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~ 261 (337)
T 1gxr_A 192 SNDGTKLWTGGL--DNTVRSWDLREGR--QLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL 261 (337)
T ss_dssp CTTSSEEEEEET--TSEEEEEETTTTE--EEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE
T ss_pred CCCCCEEEEEec--CCcEEEEECCCCc--eEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEE
Confidence 3 5555555544 7889999988743 23333 2222234456666777555 45677899999999876554
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=89.61 E-value=12 Score=34.12 Aligned_cols=183 Identities=9% Similarity=0.092 Sum_probs=95.2
Q ss_pred ecceEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEE
Q 048178 108 YCGIVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTV 187 (376)
Q Consensus 108 ~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~v 187 (376)
.+.+++....+..+.|||..+++...--.. .... ...+.+++ . .++... ....+.+
T Consensus 182 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~----h~~~-----v~~l~~~~---~-~l~s~s-----------~dg~i~v 237 (435)
T 1p22_A 182 DERVIITGSSDSTVRVWDVNTGEMLNTLIH----HCEA-----VLHLRFNN---G-MMVTCS-----------KDRSIAV 237 (435)
T ss_dssp CSSEEEEEETTSCEEEEESSSCCEEEEECC----CCSC-----EEEEECCT---T-EEEEEE-----------TTSCEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEEEEcC----CCCc-----EEEEEEcC---C-EEEEee-----------CCCcEEE
Confidence 345555556677899999998875432111 0111 23455542 2 222221 2457888
Q ss_pred EEcCCCceEe-ccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEee-ecCCCCCCCCCceeEEEecC
Q 048178 188 YNLSTNSWRN-LKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQE-IQGPCTLESSLDVTLGIYDQ 265 (376)
Q Consensus 188 yss~t~~W~~-~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~-i~lP~~~~~~~~~~l~~~~g 265 (376)
|+.+++.-.. ..... .......++..+|.....+.. ...|..+|+++.+... +.... ....-...+|
T Consensus 238 wd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~l~s~~~-----dg~i~vwd~~~~~~~~~~~~~~-----~~v~~~~~~~ 306 (435)
T 1p22_A 238 WDMASPTDITLRRVLV-GHRAAVNVVDFDDKYIVSASG-----DRTIKVWNTSTCEFVRTLNGHK-----RGIACLQYRD 306 (435)
T ss_dssp EECSSSSCCEEEEEEC-CCSSCEEEEEEETTEEEEEET-----TSEEEEEETTTCCEEEEEECCS-----SCEEEEEEET
T ss_pred EeCCCCCCceeeeEec-CCCCcEEEEEeCCCEEEEEeC-----CCeEEEEECCcCcEEEEEcCCC-----CcEEEEEeCC
Confidence 8887753211 11010 011112345557765554443 3478999998765432 22111 1123334467
Q ss_pred eEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEE-EEcCCeEEEEeCCCCc
Q 048178 266 SLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFV-ESNSSQLLLYEPGTGE 331 (376)
Q Consensus 266 ~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~-~~~~~~~~~yd~~t~~ 331 (376)
.+.+.+.. +..+.+|.+..+ ..+..+..... .+.++.-++..++ ...++.+.+||+++++
T Consensus 307 ~~l~~g~~--dg~i~iwd~~~~--~~~~~~~~h~~--~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 307 RLVVSGSS--DNTIRLWDIECG--ACLRVLEGHEE--LVRCIRFDNKRIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp TEEEEEET--TSCEEEEETTTC--CEEEEECCCSS--CEEEEECCSSEEEEEETTSCEEEEEHHHHT
T ss_pred CEEEEEeC--CCeEEEEECCCC--CEEEEEeCCcC--cEEEEEecCCEEEEEeCCCcEEEEECCCCC
Confidence 66666654 788999998873 34444422221 1222222566554 4567889999987653
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=89.08 E-value=9.6 Score=32.29 Aligned_cols=202 Identities=12% Similarity=0.138 Sum_probs=105.2
Q ss_pred eecceEEEee-cCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceE
Q 048178 107 LYCGIVFIEG-LNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLV 185 (376)
Q Consensus 107 s~~Gll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 185 (376)
+.+|-+.+.+ ....+.++|+..+....++........ .. ...++.++...+. ++.... .....+
T Consensus 38 ~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~-~~---~p~~i~~~~~~g~--l~v~~~---------~~~~~i 102 (286)
T 1q7f_A 38 NAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQ-LL---YPNRVAVVRNSGD--IIVTER---------SPTHQI 102 (286)
T ss_dssp CTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTC-BS---SEEEEEEETTTTE--EEEEEC---------GGGCEE
T ss_pred CCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCccc-cc---CceEEEEEcCCCe--EEEEcC---------CCCCEE
Confidence 4456666554 356789999986665555542211100 10 1245666433332 222110 013467
Q ss_pred EEEEcCCCceEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEEe
Q 048178 186 TVYNLSTNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIY 263 (376)
Q Consensus 186 ~vyss~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~ 263 (376)
.+|+.....-+.+..... ....++.+ +|.+|.... . ...|..||...+....+..+.... ....++.-
T Consensus 103 ~~~d~~g~~~~~~~~~~~---~~~~~i~~~~~g~l~v~~~-~----~~~i~~~~~~g~~~~~~~~~~~~~--~p~~i~~~ 172 (286)
T 1q7f_A 103 QIYNQYGQFVRKFGATIL---QHPRGVTVDNKGRIIVVEC-K----VMRVIIFDQNGNVLHKFGCSKHLE--FPNGVVVN 172 (286)
T ss_dssp EEECTTSCEEEEECTTTC---SCEEEEEECTTSCEEEEET-T----TTEEEEECTTSCEEEEEECTTTCS--SEEEEEEC
T ss_pred EEECCCCcEEEEecCccC---CCceEEEEeCCCCEEEEEC-C----CCEEEEEcCCCCEEEEeCCCCccC--CcEEEEEC
Confidence 778744433333321110 11123433 577665432 2 347999998776666554332211 11334443
Q ss_pred -cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeee--EEEeeCCcEEEEEc-CC-eEEEEeCCCCcEEEEEEe
Q 048178 264 -DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQP--LLFWKKGAFFVESN-SS-QLLLYEPGTGELRDFELE 338 (376)
Q Consensus 264 -~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~--~~~~~~g~i~~~~~-~~-~~~~yd~~t~~~~~v~~~ 338 (376)
+|.+++.... ...+.+|..+. +. +..+.....+..| +++..+|.+++... .+ .+..||.+++.++.+...
T Consensus 173 ~~g~l~v~~~~--~~~i~~~~~~g-~~--~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~ 247 (286)
T 1q7f_A 173 DKQEIFISDNR--AHCVKVFNYEG-QY--LRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESK 247 (286)
T ss_dssp SSSEEEEEEGG--GTEEEEEETTC-CE--EEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEES
T ss_pred CCCCEEEEECC--CCEEEEEcCCC-CE--EEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEccc
Confidence 5777776654 67788887653 22 2334211112233 45556788988865 33 899999988877777543
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=89.06 E-value=5.9 Score=35.12 Aligned_cols=185 Identities=12% Similarity=0.083 Sum_probs=84.0
Q ss_pred ecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCc-
Q 048178 116 GLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNS- 194 (376)
Q Consensus 116 ~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~- 194 (376)
.....+.|||..++.+..+-..... ... ...+.+.+.. .+- +... ....+.+|+..++.
T Consensus 30 ~~d~~i~iw~~~~~~~~~~~~~~~h--~~~-----v~~~~~s~~~-~~l-~s~s-----------~d~~v~vwd~~~~~~ 89 (377)
T 3dwl_C 30 TATNQVELYEQDGNGWKHARTFSDH--DKI-----VTCVDWAPKS-NRI-VTCS-----------QDRNAYVYEKRPDGT 89 (377)
T ss_dssp CSSSCBCEEEEETTEEEECCCBCCC--SSC-----EEEEEECTTT-CCE-EEEE-----------TTSSEEEC------C
T ss_pred cCCCEEEEEEccCCceEEEEEEecC--Cce-----EEEEEEeCCC-CEE-EEEe-----------CCCeEEEEEcCCCCc
Confidence 3466779999998865444333211 111 2355665543 222 2211 14578888888876
Q ss_pred eEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCce----EeeecCCCCCCCCCceeEEEe-cCeE
Q 048178 195 WRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEK----FQEIQGPCTLESSLDVTLGIY-DQSL 267 (376)
Q Consensus 195 W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~----~~~i~lP~~~~~~~~~~l~~~-~g~L 267 (376)
|+......... .....+.+ +|.....+.. ...|..+|+++.+ ...+..|... .-..+... +|++
T Consensus 90 ~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~ 160 (377)
T 3dwl_C 90 WKQTLVLLRLN-RAATFVRWSPNEDKFAVGSG-----ARVISVCYFEQENDWWVSKHLKRPLRS---TILSLDWHPNNVL 160 (377)
T ss_dssp CCCEEECCCCS-SCEEEEECCTTSSCCEEEES-----SSCEEECCC-----CCCCEEECSSCCS---CEEEEEECTTSSE
T ss_pred eeeeeEecccC-CceEEEEECCCCCEEEEEec-----CCeEEEEEECCcccceeeeEeecccCC---CeEEEEEcCCCCE
Confidence 55433221111 11112222 3443333332 2367788887764 2233322111 11233333 4555
Q ss_pred EEEEecCCCCEEEEEEeCC---------Cce-------eeEEEECCCCceeeeEEEeeCCcEEE-EEcCCeEEEEeCCCC
Q 048178 268 SLLLLDTVDHCFKIWVMQK---------KNW-------IKQSSVGPFIGIFQPLLFWKKGAFFV-ESNSSQLLLYEPGTG 330 (376)
Q Consensus 268 ~l~~~~~~~~~l~vW~l~~---------~~W-------~~~~~i~~~~~~~~~~~~~~~g~i~~-~~~~~~~~~yd~~t~ 330 (376)
.+.... +..+.+|.++. ..| ..+..+ .......-+++.++|..++ ...++.+..||++++
T Consensus 161 l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 237 (377)
T 3dwl_C 161 LAAGCA--DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAP 237 (377)
T ss_dssp EEEEES--SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECST
T ss_pred EEEEeC--CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 555544 68899999863 112 122222 1211133455666777554 466788999999887
Q ss_pred cE
Q 048178 331 EL 332 (376)
Q Consensus 331 ~~ 332 (376)
+.
T Consensus 238 ~~ 239 (377)
T 3dwl_C 238 EQ 239 (377)
T ss_dssp TS
T ss_pred CC
Confidence 64
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=89.05 E-value=12 Score=33.52 Aligned_cols=203 Identities=8% Similarity=0.020 Sum_probs=101.7
Q ss_pred ceEEEeecCCeEEEEecCccceeecC-CCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEE
Q 048178 110 GIVFIEGLNNRITLWNIATRESVTLP-KYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVY 188 (376)
Q Consensus 110 Gll~~~~~~~~~~V~NP~T~~~~~LP-~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy 188 (376)
.+|+....+..+.|||..+++...-. .+.... .... .....+.+.+....+ ++... ....+.++
T Consensus 95 ~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~-~~h~--~~v~~~~~~p~~~~~-l~s~~-----------~dg~i~iw 159 (402)
T 2aq5_A 95 NVIASGSEDCTVMVWEIPDGGLVLPLREPVITL-EGHT--KRVGIVAWHPTAQNV-LLSAG-----------CDNVILVW 159 (402)
T ss_dssp TEEEEEETTSEEEEEECCTTCCSSCBCSCSEEE-ECCS--SCEEEEEECSSBTTE-EEEEE-----------TTSCEEEE
T ss_pred CEEEEEeCCCeEEEEEccCCCCccccCCceEEe-cCCC--CeEEEEEECcCCCCE-EEEEc-----------CCCEEEEE
Confidence 35555566778999998887532200 000000 0000 012355565554332 22221 24578899
Q ss_pred EcCCCceEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEeeec-CCCCCCCCCceeEEE-ec
Q 048178 189 NLSTNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQ-GPCTLESSLDVTLGI-YD 264 (376)
Q Consensus 189 ss~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~-lP~~~~~~~~~~l~~-~~ 264 (376)
+.+++.....-... .......++.+ +|.....+.. ...|..+|+.+.+....- ...... ....+.. -+
T Consensus 160 d~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 231 (402)
T 2aq5_A 160 DVGTGAAVLTLGPD-VHPDTIYSVDWSRDGALICTSCR-----DKRVRVIEPRKGTVVAEKDRPHEGT--RPVHAVFVSE 231 (402)
T ss_dssp ETTTTEEEEEECTT-TCCSCEEEEEECTTSSCEEEEET-----TSEEEEEETTTTEEEEEEECSSCSS--SCCEEEECST
T ss_pred ECCCCCccEEEecC-CCCCceEEEEECCCCCEEEEEec-----CCcEEEEeCCCCceeeeeccCCCCC--cceEEEEcCC
Confidence 98887543211000 00111123333 4554444433 347999999886643321 221111 0123333 35
Q ss_pred CeEEEEEe-cCCCCEEEEEEeCC-CceeeEEEECCCCceeeeEEEeeCCcEE-EEE-cCCeEEEEeCCCCc--EEEEE
Q 048178 265 QSLSLLLL-DTVDHCFKIWVMQK-KNWIKQSSVGPFIGIFQPLLFWKKGAFF-VES-NSSQLLLYEPGTGE--LRDFE 336 (376)
Q Consensus 265 g~L~l~~~-~~~~~~l~vW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~g~i~-~~~-~~~~~~~yd~~t~~--~~~v~ 336 (376)
|.+.+++. ...+..+.||.+.. ..=.....+ ....-..-+++..+|..+ +.. .++.+.+||+++++ ++.+.
T Consensus 232 ~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~ 308 (402)
T 2aq5_A 232 GKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLS 308 (402)
T ss_dssp TEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEE
T ss_pred CcEEEEeccCCCCceEEEEcCccccCCceEEec-cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeec
Confidence 66655553 23478999999887 221223333 222223334556677755 455 47789999999887 66664
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.40 E-value=13 Score=33.12 Aligned_cols=197 Identities=10% Similarity=0.029 Sum_probs=94.5
Q ss_pred ceEEEeecCCeEEEEecCccc------eeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcc
Q 048178 110 GIVFIEGLNNRITLWNIATRE------SVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFS 183 (376)
Q Consensus 110 Gll~~~~~~~~~~V~NP~T~~------~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~ 183 (376)
.+++.......+.|||..+++ .......... .... ...+.+.+..+.+ ++.. ....
T Consensus 127 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~-----v~~~~~~~~~~~~-l~~~-----------~~dg 188 (416)
T 2pm9_A 127 NVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMS-SVDE-----VISLAWNQSLAHV-FASA-----------GSSN 188 (416)
T ss_dssp TBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCC-SSCC-----CCEEEECSSCTTE-EEEE-----------SSSS
T ss_pred CEEEEEcCCCeEEEEECCCCccccccccccccccccC-CCCC-----eeEEEeCCCCCcE-EEEE-----------cCCC
Confidence 355555556778999998876 2221111000 0111 2345565543333 2222 1245
Q ss_pred eEEEEEcCCCceEeccccCccc---cCCCCeEEE--Cc-eEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCc
Q 048178 184 LVTVYNLSTNSWRNLKSIDYTM---RLSSERTYF--DG-AFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLD 257 (376)
Q Consensus 184 ~~~vyss~t~~W~~~~~~~~~~---~~~~~~v~~--~G-~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~ 257 (376)
.+.+|+.+++.-...-...... ......+.+ +| .+...+..+. ....|..+|+.+..-....+...... .-
T Consensus 189 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~~~~i~~~d~~~~~~~~~~~~~~~~~-~v 265 (416)
T 2pm9_A 189 FASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSD--NDPSILIWDLRNANTPLQTLNQGHQK-GI 265 (416)
T ss_dssp CEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCS--SSCCCCEEETTSTTSCSBCCCSCCSS-CE
T ss_pred CEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCC--CCceEEEEeCCCCCCCcEEeecCccC-ce
Confidence 7889998887543221111000 111122333 23 2333333211 01267888887642111112100000 11
Q ss_pred eeEEEe--cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCC-cEEEE-EcCCeEEEEeCCCCc
Q 048178 258 VTLGIY--DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKG-AFFVE-SNSSQLLLYEPGTGE 331 (376)
Q Consensus 258 ~~l~~~--~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g-~i~~~-~~~~~~~~yd~~t~~ 331 (376)
..+... +|.+.+.... +..+.+|.++.. ..+..+........-+++.+++ .+++. ..++.+..||+++.+
T Consensus 266 ~~~~~s~~~~~~l~s~~~--dg~v~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 266 LSLDWCHQDEHLLLSSGR--DNTVLLWNPESA--EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLT 339 (416)
T ss_dssp EEEEECSSCSSCEEEEES--SSEEEEECSSSC--CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred eEEEeCCCCCCeEEEEeC--CCCEEEeeCCCC--ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCC
Confidence 233333 4566655554 788999998873 3344442222223346667777 66665 557889999998765
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=88.06 E-value=23 Score=35.37 Aligned_cols=194 Identities=10% Similarity=0.035 Sum_probs=99.1
Q ss_pred cceEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEE
Q 048178 109 CGIVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVY 188 (376)
Q Consensus 109 ~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy 188 (376)
+|-|.+.....-++.+||.|+++..++.... .... ...+..|+.. - +.+.. ...+..|
T Consensus 417 ~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~--~~~~-----v~~i~~d~~g--~--lwigt-----------~~Gl~~~ 474 (781)
T 3v9f_A 417 EGNLWFGTYLGNISYYNTRLKKFQIIELEKN--ELLD-----VRVFYEDKNK--K--IWIGT-----------HAGVFVI 474 (781)
T ss_dssp TSCEEEEETTEEEEEECSSSCEEEECCSTTT--CCCC-----EEEEEECTTS--E--EEEEE-----------TTEEEEE
T ss_pred CCCEEEEeccCCEEEEcCCCCcEEEeccCCC--CCCe-----EEEEEECCCC--C--EEEEE-----------CCceEEE
Confidence 4444444433456778888887777654311 0111 1234444322 1 23322 2467888
Q ss_pred EcCCCceEeccccCc-ccc-CCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEE-e
Q 048178 189 NLSTNSWRNLKSIDY-TMR-LSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGI-Y 263 (376)
Q Consensus 189 ss~t~~W~~~~~~~~-~~~-~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~-~ 263 (376)
+..++.|+....... ... ....++.. +|. .|++..+ ..+..||..++++..+..+.......-..+.+ -
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~~-----~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~ 548 (781)
T 3v9f_A 475 DLASKKVIHHYDTSNSQLLENFVRSIAQDSEGR-FWIGTFG-----GGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSS 548 (781)
T ss_dssp ESSSSSCCEEECTTTSSCSCSCEEEEEECTTCC-EEEEESS-----SCEEEECTTCCEEEEECTTTTCSCSCEEEEEECT
T ss_pred eCCCCeEEecccCcccccccceeEEEEEcCCCC-EEEEEcC-----CCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECC
Confidence 888888876543221 111 11123333 354 4666542 25889999999998875433322211233444 3
Q ss_pred cCeEEEEEecCCCCEE-EEEEeCCCceeeEEEEC--CCCceeeeEEEeeCCcEEEEEcCCeEEEEeCCCCcEEEEE
Q 048178 264 DQSLSLLLLDTVDHCF-KIWVMQKKNWIKQSSVG--PFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGELRDFE 336 (376)
Q Consensus 264 ~g~L~l~~~~~~~~~l-~vW~l~~~~W~~~~~i~--~~~~~~~~~~~~~~g~i~~~~~~~~~~~yd~~t~~~~~v~ 336 (376)
+|.|.+.... .+ ..|..+..++.....-+ +-.. ..-+...++|.|++....+ +..||+++++++.+.
T Consensus 549 ~g~lWi~T~~----Glv~~~d~~~~~~~~~~~~~gl~~~~-i~~i~~d~~g~lW~~t~~G-l~~~~~~~~~~~~~~ 618 (781)
T 3v9f_A 549 KGQMWLATGE----GLVCFPSARNFDYQVFQRKEGLPNTH-IRAISEDKNGNIWASTNTG-ISCYITSKKCFYTYD 618 (781)
T ss_dssp TSCEEEEETT----EEEEESCTTTCCCEEECGGGTCSCCC-CCEEEECSSSCEEEECSSC-EEEEETTTTEEEEEC
T ss_pred CCCEEEEECC----CceEEECCCCCcEEEccccCCCCCce-EEEEEECCCCCEEEEcCCc-eEEEECCCCceEEec
Confidence 5666665431 22 22222223333221110 1111 2223334478899987665 999999999887764
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=87.91 E-value=12 Score=32.17 Aligned_cols=141 Identities=9% Similarity=0.083 Sum_probs=73.7
Q ss_pred cceEEEEEcC-CCceEeccccCccccCCCCeEEE--Cce-EEEEeeecCCCCccEEEEEECC--CceEeee-cCCCCCCC
Q 048178 182 FSLVTVYNLS-TNSWRNLKSIDYTMRLSSERTYF--DGA-FYWLLKLENDNDNYVILSFHMA--EEKFQEI-QGPCTLES 254 (376)
Q Consensus 182 ~~~~~vyss~-t~~W~~~~~~~~~~~~~~~~v~~--~G~-lywl~~~~~~~~~~~i~~fD~~--~e~~~~i-~lP~~~~~ 254 (376)
...+.+|+.. ++..+.+...... .....+.+ +|. +|..... ...|..||+. ++++..+ .++....
T Consensus 14 ~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~spdg~~l~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~- 85 (343)
T 1ri6_A 14 SQQIHVWNLNHEGALTLTQVVDVP--GQVQPMVVSPDKRYLYVGVRP-----EFRVLAYRIAPDDGALTFAAESALPGS- 85 (343)
T ss_dssp GTEEEEEEECTTSCEEEEEEEECS--SCCCCEEECTTSSEEEEEETT-----TTEEEEEEECTTTCCEEEEEEEECSSC-
T ss_pred CCeEEEEEECCCCcEEEeeeEecC--CCCceEEECCCCCEEEEeecC-----CCeEEEEEecCCCCceeeccccccCCC-
Confidence 4567777774 4555544322111 11123333 566 4443332 1367777766 6666544 2222111
Q ss_pred CCceeEEEe-cCe-EEEEEecCCCCEEEEEEeCC-CceeeEEEECCCCceeeeEEEeeCCc-EEEEE-cCCeEEEEeCCC
Q 048178 255 SLDVTLGIY-DQS-LSLLLLDTVDHCFKIWVMQK-KNWIKQSSVGPFIGIFQPLLFWKKGA-FFVES-NSSQLLLYEPGT 329 (376)
Q Consensus 255 ~~~~~l~~~-~g~-L~l~~~~~~~~~l~vW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~~-~~~~~~~yd~~t 329 (376)
...+... +|+ |++.... ...+.+|.+++ ........+ +......-+++..+|+ +++.. .++.+..||+++
T Consensus 86 --~~~~~~s~dg~~l~~~~~~--~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 160 (343)
T 1ri6_A 86 --LTHISTDHQGQFVFVGSYN--AGNVSVTRLEDGLPVGVVDVV-EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSD 160 (343)
T ss_dssp --CSEEEECTTSSEEEEEETT--TTEEEEEEEETTEEEEEEEEE-CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred --CcEEEEcCCCCEEEEEecC--CCeEEEEECCCCccccccccc-cCCCCceEEEECCCCCEEEEecCCCCEEEEEEecC
Confidence 1233333 555 4444433 67899999854 234444445 2222233356666776 55555 577899999988
Q ss_pred -CcEEEE
Q 048178 330 -GELRDF 335 (376)
Q Consensus 330 -~~~~~v 335 (376)
++++.+
T Consensus 161 ~~~~~~~ 167 (343)
T 1ri6_A 161 DGHLVAQ 167 (343)
T ss_dssp TSCEEEE
T ss_pred CCceeee
Confidence 766643
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=87.71 E-value=14 Score=32.41 Aligned_cols=192 Identities=13% Similarity=0.066 Sum_probs=92.7
Q ss_pred eEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEc
Q 048178 111 IVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNL 190 (376)
Q Consensus 111 ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss 190 (376)
+++.......+.|||..++++..+-..... ... ...+.+.+. +.+-+.+- ....+.+|+.
T Consensus 22 ~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h--~~~-----v~~~~~~~~-~~~l~~~~------------~dg~i~vwd~ 81 (372)
T 1k8k_C 22 QIAICPNNHEVHIYEKSGNKWVQVHELKEH--NGQ-----VTGVDWAPD-SNRIVTCG------------TDRNAYVWTL 81 (372)
T ss_dssp EEEEECSSSEEEEEEEETTEEEEEEEEECC--SSC-----EEEEEEETT-TTEEEEEE------------TTSCEEEEEE
T ss_pred EEEEEeCCCEEEEEeCCCCcEEeeeeecCC--CCc-----ccEEEEeCC-CCEEEEEc------------CCCeEEEEEC
Confidence 333334567789999998853222211111 111 235666653 33322221 1457889999
Q ss_pred CCCceEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCce-E---eeecCCCCCCCCCceeEEEe-
Q 048178 191 STNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEK-F---QEIQGPCTLESSLDVTLGIY- 263 (376)
Q Consensus 191 ~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~-~---~~i~lP~~~~~~~~~~l~~~- 263 (376)
+++.+......... ......+.+ +|.....+..+ ..|..+|+.+.. + ..+..+... .-..+...
T Consensus 82 ~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d-----~~v~i~d~~~~~~~~~~~~~~~~~~~---~i~~~~~~~ 152 (372)
T 1k8k_C 82 KGRTWKPTLVILRI-NRAARCVRWAPNEKKFAVGSGS-----RVISICYFEQENDWWVCKHIKKPIRS---TVLSLDWHP 152 (372)
T ss_dssp ETTEEEEEEECCCC-SSCEEEEEECTTSSEEEEEETT-----SSEEEEEEETTTTEEEEEEECTTCCS---CEEEEEECT
T ss_pred CCCeeeeeEEeecC-CCceeEEEECCCCCEEEEEeCC-----CEEEEEEecCCCcceeeeeeecccCC---CeeEEEEcC
Confidence 88877654322111 111112222 35444444332 246666665443 2 222222111 11233333
Q ss_pred cCeEEEEEecCCCCEEEEEEeCC---------C-------ceeeEEEECCCCceeeeEEEeeCCcEEE-EEcCCeEEEEe
Q 048178 264 DQSLSLLLLDTVDHCFKIWVMQK---------K-------NWIKQSSVGPFIGIFQPLLFWKKGAFFV-ESNSSQLLLYE 326 (376)
Q Consensus 264 ~g~L~l~~~~~~~~~l~vW~l~~---------~-------~W~~~~~i~~~~~~~~~~~~~~~g~i~~-~~~~~~~~~yd 326 (376)
+|.+.+.... +..+.+|.+.. . .-..+..+........-+.+.++|..++ ...++.+..||
T Consensus 153 ~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d 230 (372)
T 1k8k_C 153 NSVLLAAGSC--DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLAD 230 (372)
T ss_dssp TSSEEEEEET--TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred CCCEEEEEcC--CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 4555555544 67899999642 1 1223333311121233455566776554 46678899999
Q ss_pred CCCCcEE
Q 048178 327 PGTGELR 333 (376)
Q Consensus 327 ~~t~~~~ 333 (376)
+++++..
T Consensus 231 ~~~~~~~ 237 (372)
T 1k8k_C 231 ADKKMAV 237 (372)
T ss_dssp GGGTTEE
T ss_pred CCCCcee
Confidence 9877543
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=87.56 E-value=8.8 Score=33.38 Aligned_cols=113 Identities=12% Similarity=0.065 Sum_probs=62.3
Q ss_pred CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEEe-cCeEEEEEecC--CCCEEEEEEeCCCceee
Q 048178 215 DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIY-DQSLSLLLLDT--VDHCFKIWVMQKKNWIK 291 (376)
Q Consensus 215 ~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~-~g~L~l~~~~~--~~~~l~vW~l~~~~W~~ 291 (376)
+|.+||.... ...|..+|.++.++..+..+... ....++.. +|+|++..... ....+.+|..+...-..
T Consensus 55 ~g~l~~~~~~-----~~~i~~~d~~~~~~~~~~~~~~~---~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~ 126 (333)
T 2dg1_A 55 QGQLFLLDVF-----EGNIFKINPETKEIKRPFVSHKA---NPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQD 126 (333)
T ss_dssp TSCEEEEETT-----TCEEEEECTTTCCEEEEEECSSS---SEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEE
T ss_pred CCCEEEEECC-----CCEEEEEeCCCCcEEEEeeCCCC---CcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEE
Confidence 6888876643 23799999998877665321111 11234443 66777776531 11455555544432221
Q ss_pred EEEECCCCceeeeEEEeeCCcEEEEEc-------CCeEEEEeCCCCcEEEE
Q 048178 292 QSSVGPFIGIFQPLLFWKKGAFFVESN-------SSQLLLYEPGTGELRDF 335 (376)
Q Consensus 292 ~~~i~~~~~~~~~~~~~~~g~i~~~~~-------~~~~~~yd~~t~~~~~v 335 (376)
...-........-+++.++|.+++... ...++.+|+++++++.+
T Consensus 127 ~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~ 177 (333)
T 2dg1_A 127 IIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI 177 (333)
T ss_dssp EECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE
T ss_pred EEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEe
Confidence 211001111122345566788888754 35799999998877665
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.32 E-value=15 Score=32.35 Aligned_cols=183 Identities=11% Similarity=0.135 Sum_probs=91.6
Q ss_pred ecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCce
Q 048178 116 GLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSW 195 (376)
Q Consensus 116 ~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W 195 (376)
..+..+.|||..++++......... +... ...+.+.|. +.+- +.. .....+.+++..++.+
T Consensus 35 ~~D~~i~iw~~~~~~~~~~~~~~~~-h~~~-----v~~~~~sp~-g~~l-~s~-----------s~D~~v~iw~~~~~~~ 95 (345)
T 3fm0_A 35 GGDRRIRIWGTEGDSWICKSVLSEG-HQRT-----VRKVAWSPC-GNYL-ASA-----------SFDATTCIWKKNQDDF 95 (345)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECSS-CSSC-----EEEEEECTT-SSEE-EEE-----------ETTSCEEEEEECCC-E
T ss_pred cCCCeEEEEEcCCCcceeeeeeccc-cCCc-----EEEEEECCC-CCEE-EEE-----------ECCCcEEEEEccCCCe
Confidence 4456778999888765422111100 1111 235666653 2332 221 1244677888877766
Q ss_pred EeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCc-eEeee-cCCCCCCCCCceeEEEe-cCeEEEE
Q 048178 196 RNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEE-KFQEI-QGPCTLESSLDVTLGIY-DQSLSLL 270 (376)
Q Consensus 196 ~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e-~~~~i-~lP~~~~~~~~~~l~~~-~g~L~l~ 270 (376)
+.+....... ....++.+ +|.+...+.. ...|..+|+.++ ....+ .+..... .-..+.-. +|.+.+.
T Consensus 96 ~~~~~~~~h~-~~v~~v~~sp~~~~l~s~s~-----D~~v~iwd~~~~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l~s 167 (345)
T 3fm0_A 96 ECVTTLEGHE-NEVKSVAWAPSGNLLATCSR-----DKSVWVWEVDEEDEYECVSVLNSHTQ--DVKHVVWHPSQELLAS 167 (345)
T ss_dssp EEEEEECCCS-SCEEEEEECTTSSEEEEEET-----TSCEEEEEECTTSCEEEEEEECCCCS--CEEEEEECSSSSCEEE
T ss_pred EEEEEccCCC-CCceEEEEeCCCCEEEEEEC-----CCeEEEEECCCCCCeEEEEEecCcCC--CeEEEEECCCCCEEEE
Confidence 5443221111 01112322 3544333332 236777887653 22222 1111111 11222222 4555555
Q ss_pred EecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEE-EcCCeEEEEeC
Q 048178 271 LLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVE-SNSSQLLLYEP 327 (376)
Q Consensus 271 ~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~-~~~~~~~~yd~ 327 (376)
... +..+.+|..+...|....++........-+++.++|..++. ..++.+..||.
T Consensus 168 ~s~--d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 168 ASY--DDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp EET--TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred EeC--CCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence 544 67899999988888887777323323444666777876655 55677888875
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=86.86 E-value=15 Score=31.92 Aligned_cols=203 Identities=9% Similarity=-0.009 Sum_probs=104.5
Q ss_pred eecceEEEeec-CCeEEEEecCccceee-cCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcce
Q 048178 107 LYCGIVFIEGL-NNRITLWNIATRESVT-LPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSL 184 (376)
Q Consensus 107 s~~Gll~~~~~-~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 184 (376)
..++.+++... ...+.++|+.|++... ++........ ........++.+++..+ + ++.... .....
T Consensus 98 ~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~dg~-~-l~~~~~---------~~~~~ 165 (353)
T 3vgz_A 98 NTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTE-EVRPLQPRELVADDATN-T-VYISGI---------GKESV 165 (353)
T ss_dssp TTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCS-SCCCCEEEEEEEETTTT-E-EEEEEE---------SSSCE
T ss_pred CCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCcccc-ccCCCCCceEEECCCCC-E-EEEEec---------CCCce
Confidence 33444555544 5789999999988533 3332111100 00000123567776544 2 222211 12457
Q ss_pred EEEEEcCCCceE-eccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEe-eecCCCCCCCCCceeEEE
Q 048178 185 VTVYNLSTNSWR-NLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQ-EIQGPCTLESSLDVTLGI 262 (376)
Q Consensus 185 ~~vyss~t~~W~-~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~-~i~lP~~~~~~~~~~l~~ 262 (376)
+.+++.+++.=. .++.. ......-.+.-+|...+++.. ...|..+|..+.+.. .+..+..........+..
T Consensus 166 i~~~d~~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~-----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (353)
T 3vgz_A 166 IWVVDGGNIKLKTAIQNT--GKMSTGLALDSEGKRLYTTNA-----DGELITIDTADNKILSRKKLLDDGKEHFFINISL 238 (353)
T ss_dssp EEEEETTTTEEEEEECCC--CTTCCCCEEETTTTEEEEECT-----TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEE
T ss_pred EEEEcCCCCceEEEecCC--CCccceEEECCCCCEEEEEcC-----CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEE
Confidence 888888876422 22101 010111123336664444433 237889999887654 345533211111123443
Q ss_pred e-cCe-EEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCc-EEEEE-cCCeEEEEeCCCCcEEE
Q 048178 263 Y-DQS-LSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGA-FFVES-NSSQLLLYEPGTGELRD 334 (376)
Q Consensus 263 ~-~g~-L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~~-~~~~~~~yd~~t~~~~~ 334 (376)
. +|+ |++.... ...+.+|.++..+-.....+ +.. .-+++..+|+ +++.. .++.+..||+++++...
T Consensus 239 s~dg~~l~~~~~~--~~~v~~~d~~~~~~~~~~~~-~~~---~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~ 308 (353)
T 3vgz_A 239 DTARQRAFITDSK--AAEVLVVDTRNGNILAKVAA-PES---LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVK 308 (353)
T ss_dssp ETTTTEEEEEESS--SSEEEEEETTTCCEEEEEEC-SSC---CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCCCCEEEEEeCC--CCEEEEEECCCCcEEEEEEc-CCC---ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEE
Confidence 3 455 6555433 67888998877444443333 221 2356677777 66665 46789999999887654
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=86.67 E-value=16 Score=32.01 Aligned_cols=68 Identities=12% Similarity=0.062 Sum_probs=44.3
Q ss_pred cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEcCCeEEEEeCCC--CcEEEE
Q 048178 264 DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGT--GELRDF 335 (376)
Q Consensus 264 ~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~yd~~t--~~~~~v 335 (376)
+|...+.... +..+.+|.++..+ .+..+.....-..-+++..+|.++....++.+..||+++ ++|..+
T Consensus 213 ~~~~l~~~~~--d~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~ 282 (372)
T 1k8k_C 213 NGSRVAWVSH--DSTVCLADADKKM--AVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFG 282 (372)
T ss_dssp SSSEEEEEET--TTEEEEEEGGGTT--EEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEEC
T ss_pred CCCEEEEEeC--CCEEEEEECCCCc--eeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEe
Confidence 5555444444 7889999998743 333331122123445667788888877888899999998 776554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=86.53 E-value=27 Score=34.61 Aligned_cols=191 Identities=15% Similarity=0.170 Sum_probs=97.7
Q ss_pred eecc-eEEEeecCCeEEEEecCccceee-cCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcce
Q 048178 107 LYCG-IVFIEGLNNRITLWNIATRESVT-LPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSL 184 (376)
Q Consensus 107 s~~G-ll~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 184 (376)
+.+| +|+.......+.|||..+++... +.... .. ...+.+.+.. .+ ++.. .....
T Consensus 64 s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-----~~-----v~~~~~s~~~-~~-l~~~-----------~~dg~ 120 (814)
T 3mkq_A 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP-----DY-----IRSIAVHPTK-PY-VLSG-----------SDDLT 120 (814)
T ss_dssp EGGGTEEEEEETTSEEEEEETTTCCEEEEEECCS-----SC-----EEEEEECSSS-SE-EEEE-----------ETTSE
T ss_pred eCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCC-----CC-----EEEEEEeCCC-CE-EEEE-----------cCCCE
Confidence 3344 55555667889999999887644 22111 11 2345555433 22 2221 12457
Q ss_pred EEEEEcCCCceEeccccCccccCCCCeEEE---CceEEEEeeecCCCCccEEEEEECCCceEee-ecCCCCCCCCCceeE
Q 048178 185 VTVYNLSTNSWRNLKSIDYTMRLSSERTYF---DGAFYWLLKLENDNDNYVILSFHMAEEKFQE-IQGPCTLESSLDVTL 260 (376)
Q Consensus 185 ~~vyss~t~~W~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~-i~lP~~~~~~~~~~l 260 (376)
+.+|+..++ |........ ......++.+ +|.....+.. ...|..+|+.+..-.. +........ ..+
T Consensus 121 i~vw~~~~~-~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~-----dg~v~vwd~~~~~~~~~~~~~~~~~v---~~~ 190 (814)
T 3mkq_A 121 VKLWNWENN-WALEQTFEG-HEHFVMCVAFNPKDPSTFASGCL-----DRTVKVWSLGQSTPNFTLTTGQERGV---NYV 190 (814)
T ss_dssp EEEEEGGGT-SEEEEEEEC-CSSCEEEEEEETTEEEEEEEEET-----TSEEEEEETTCSSCSEEEECCCTTCC---CEE
T ss_pred EEEEECCCC-ceEEEEEcC-CCCcEEEEEEEcCCCCEEEEEeC-----CCeEEEEECCCCcceeEEecCCCCCE---EEE
Confidence 888988776 222111100 0011123333 3444444433 3378899987654322 222211111 223
Q ss_pred EEe---cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEE-EcCCeEEEEeCCCCcEEE
Q 048178 261 GIY---DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVE-SNSSQLLLYEPGTGELRD 334 (376)
Q Consensus 261 ~~~---~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~-~~~~~~~~yd~~t~~~~~ 334 (376)
... +|.+.++... +..+.+|.+...+ .+..+.....-...+++.++|.+++. ..++.+..||+.+++...
T Consensus 191 ~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~ 264 (814)
T 3mkq_A 191 DYYPLPDKPYMITASD--DLTIKIWDYQTKS--CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK 264 (814)
T ss_dssp EECCSTTCCEEEEECT--TSEEEEEETTTTE--EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEE
T ss_pred EEEECCCCCEEEEEeC--CCEEEEEECCCCc--EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 332 5555555544 6799999987733 33333212222344566677876655 557889999999876443
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=86.46 E-value=16 Score=32.05 Aligned_cols=117 Identities=15% Similarity=0.163 Sum_probs=65.5
Q ss_pred CceEEEEeeecCCCCccEEEEEECCCceEeee-cCCCCCCCC-CceeEEEe-cCeEEEEEecCCCCEEEEEEeCC--Cce
Q 048178 215 DGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCTLESS-LDVTLGIY-DQSLSLLLLDTVDHCFKIWVMQK--KNW 289 (376)
Q Consensus 215 ~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~-~~~~l~~~-~g~L~l~~~~~~~~~l~vW~l~~--~~W 289 (376)
+|...++.... ...|..||+.+.++..+ .++...... ....+... +|+..++........+.||.++. +++
T Consensus 221 dg~~l~v~~~~----~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~ 296 (361)
T 3scy_A 221 DGKFAYLINEI----GGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTL 296 (361)
T ss_dssp TSSEEEEEETT----TCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCE
T ss_pred CCCEEEEEcCC----CCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcE
Confidence 57644444332 33688888877766544 222111110 11233333 66633333322257899999973 677
Q ss_pred eeEEEECCCCceeeeEEEeeCCc-EEEEE-cCCeEEE--EeCCCCcEEEEE
Q 048178 290 IKQSSVGPFIGIFQPLLFWKKGA-FFVES-NSSQLLL--YEPGTGELRDFE 336 (376)
Q Consensus 290 ~~~~~i~~~~~~~~~~~~~~~g~-i~~~~-~~~~~~~--yd~~t~~~~~v~ 336 (376)
..+..+ +......-+++.++|+ +++.. ..+.+.+ +|+++++++.+.
T Consensus 297 ~~~~~~-~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~ 346 (361)
T 3scy_A 297 TKVGYQ-LTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIK 346 (361)
T ss_dssp EEEEEE-ECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECS
T ss_pred EEeeEe-cCCCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecc
Confidence 777776 3322233467777888 44544 3455555 688899888774
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=86.44 E-value=17 Score=32.20 Aligned_cols=196 Identities=11% Similarity=0.025 Sum_probs=90.3
Q ss_pred eecceEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEE
Q 048178 107 LYCGIVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVT 186 (376)
Q Consensus 107 s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 186 (376)
+.+|.++.......+.|||..+++............... ...+.+.|. +.+- +.. .....+.
T Consensus 103 s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~-----V~~v~~spd-g~~l-~sg-----------s~dg~v~ 164 (357)
T 4g56_B 103 VSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDI-----VKTLSVFSD-GTQA-VSG-----------GKDFSVK 164 (357)
T ss_dssp ETTTEEEEEETTSCEEEC--------CCCCEEECCCSSC-----EEEEEECSS-SSEE-EEE-----------ETTSCEE
T ss_pred cCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCC-----EEEEEECCC-CCEE-EEE-----------eCCCeEE
Confidence 446666666667788999999887654433221111111 234555543 2332 221 1245688
Q ss_pred EEEcCCCceEe-ccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEee-ecCCCCCCCCCceeEEE
Q 048178 187 VYNLSTNSWRN-LKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQE-IQGPCTLESSLDVTLGI 262 (376)
Q Consensus 187 vyss~t~~W~~-~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~-i~lP~~~~~~~~~~l~~ 262 (376)
+++.+++.-.. +... . ....++.+ +|.-+.+.... ...|..+|+++.+-.. +....... ....+.-
T Consensus 165 iwd~~~~~~~~~~~~h---~-~~v~~v~~s~~~~~~~~s~~~----dg~v~~wd~~~~~~~~~~~~~~~~~--~v~~v~~ 234 (357)
T 4g56_B 165 VWDLSQKAVLKSYNAH---S-SEVNCVAACPGKDTIFLSCGE----DGRILLWDTRKPKPATRIDFCASDT--IPTSVTW 234 (357)
T ss_dssp EEETTTTEEEEEECCC---S-SCEEEEEECTTCSSCEEEEET----TSCEEECCTTSSSCBCBCCCTTCCS--CEEEEEE
T ss_pred EEECCCCcEEEEEcCC---C-CCEEEEEEccCCCceeeeecc----CCceEEEECCCCceeeeeeeccccc--cccchhh
Confidence 88888764321 1111 0 01112322 23322233222 2367888887654322 12211111 1122332
Q ss_pred e--cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCC-cEEEE-EcCCeEEEEeCCCCcEEE
Q 048178 263 Y--DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKG-AFFVE-SNSSQLLLYEPGTGELRD 334 (376)
Q Consensus 263 ~--~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g-~i~~~-~~~~~~~~yd~~t~~~~~ 334 (376)
. ++.+.+.... +..+.+|.+... ..+..+.....-..-+++..++ .++.. ..++.+.+||.++++.-+
T Consensus 235 sp~~~~~la~g~~--d~~i~~wd~~~~--~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~ 306 (357)
T 4g56_B 235 HPEKDDTFACGDE--TGNVSLVNIKNP--DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFR 306 (357)
T ss_dssp CTTSTTEEEEEES--SSCEEEEESSCG--GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEE
T ss_pred hhcccceEEEeec--ccceeEEECCCC--cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeE
Confidence 2 3445555544 678999998772 2223331112123345666565 45554 567789999999987654
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=86.36 E-value=23 Score=33.70 Aligned_cols=194 Identities=7% Similarity=-0.029 Sum_probs=103.3
Q ss_pred eecceEEEeec-CCeEEEEecCccceee-cCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcce
Q 048178 107 LYCGIVFIEGL-NNRITLWNIATRESVT-LPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSL 184 (376)
Q Consensus 107 s~~Gll~~~~~-~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 184 (376)
+-+|.+++... ...+.|+|+.|++... ++... . ..++.++|.. .|-.+.- . .-.
T Consensus 146 ~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~-----~------~~~v~~spdg-~~l~v~~-----------~-d~~ 201 (543)
T 1nir_A 146 DLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-----A------VHISRMSASG-RYLLVIG-----------R-DAR 201 (543)
T ss_dssp CGGGEEEEEEGGGTEEEEEETTTCCEEEEEECST-----T------EEEEEECTTS-CEEEEEE-----------T-TSE
T ss_pred CCCCEEEEEEcCCCeEEEEECCCceEEEEEecCc-----c------cceEEECCCC-CEEEEEC-----------C-CCe
Confidence 34677766654 5678999999988543 33210 0 1245555533 3322221 1 257
Q ss_pred EEEEEc--CCCceEeccccCccccCCCCeEEE------CceEEEEeeecCCCCccEEEEEECCCceE-eeecCCCCCCC-
Q 048178 185 VTVYNL--STNSWRNLKSIDYTMRLSSERTYF------DGAFYWLLKLENDNDNYVILSFHMAEEKF-QEIQGPCTLES- 254 (376)
Q Consensus 185 ~~vyss--~t~~W~~~~~~~~~~~~~~~~v~~------~G~lywl~~~~~~~~~~~i~~fD~~~e~~-~~i~lP~~~~~- 254 (376)
+.+|+. .+++ .+...+... ...++.+ +|..-+.+... ...|..+|..+.+. ..++.+.....
T Consensus 202 V~v~D~~~~t~~--~~~~i~~g~--~p~~va~sp~~~~dg~~l~v~~~~----~~~v~v~D~~t~~~~~~i~~~g~~~~~ 273 (543)
T 1nir_A 202 IDMIDLWAKEPT--KVAEIKIGI--EARSVESSKFKGYEDRYTIAGAYW----PPQFAIMDGETLEPKQIVSTRGMTVDT 273 (543)
T ss_dssp EEEEETTSSSCE--EEEEEECCS--EEEEEEECCSTTCTTTEEEEEEEE----SSEEEEEETTTCCEEEEEECCEECSSS
T ss_pred EEEEECcCCCCc--EEEEEecCC--CcceEEeCCCcCCCCCEEEEEEcc----CCeEEEEeccccccceeecccCcccCc
Confidence 888988 5543 222111111 0123322 57655555433 34788999887554 44454321100
Q ss_pred -----C-CceeEEEe-cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEE-EE-cCCeEEEE
Q 048178 255 -----S-LDVTLGIY-DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFV-ES-NSSQLLLY 325 (376)
Q Consensus 255 -----~-~~~~l~~~-~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~-~~-~~~~~~~y 325 (376)
. ....+... +|..+++.. .....+.+|..++.+=.++.++ +......-+++..+|+.++ .. ..+.+.++
T Consensus 274 ~~~~~~~~v~~i~~s~~~~~~~vs~-~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~ 351 (543)
T 1nir_A 274 QTYHPEPRVAAIIASHEHPEFIVNV-KETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVI 351 (543)
T ss_dssp CCEESCCCEEEEEECSSSSEEEEEE-TTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEE
T ss_pred cccccCCceEEEEECCCCCEEEEEE-CCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEE
Confidence 0 11223333 355555554 3467888888877322233445 3332344577788888544 43 36789999
Q ss_pred eCCCCcEEE
Q 048178 326 EPGTGELRD 334 (376)
Q Consensus 326 d~~t~~~~~ 334 (376)
|.+++++..
T Consensus 352 D~~tg~l~~ 360 (543)
T 1nir_A 352 DSKDRRLSA 360 (543)
T ss_dssp ETTTTEEEE
T ss_pred ECCCCeEEE
Confidence 999998665
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=85.65 E-value=10 Score=34.61 Aligned_cols=118 Identities=9% Similarity=0.038 Sum_probs=70.4
Q ss_pred CceEEEEeeecCCCCccEEEEEECCCceEeee---cC-C-----CCCCCCCceeEEEe--cCeEEEEEecC-----CCCE
Q 048178 215 DGAFYWLLKLENDNDNYVILSFHMAEEKFQEI---QG-P-----CTLESSLDVTLGIY--DQSLSLLLLDT-----VDHC 278 (376)
Q Consensus 215 ~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i---~l-P-----~~~~~~~~~~l~~~--~g~L~l~~~~~-----~~~~ 278 (376)
+|.++|....+ .+.++|+.++.-..+ .+ . ..........++.- .++||+..... ....
T Consensus 237 dG~~~~vs~~g------~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~ 310 (386)
T 3sjl_D 237 AGRLVWPTYTG------KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTAS 310 (386)
T ss_dssp TTEEEEEBTTS------EEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCE
T ss_pred CCcEEEEeCCC------EEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCC
Confidence 78888877643 699999987653322 10 0 00000001123333 34588865411 1235
Q ss_pred EEEEEeCCCceeeEEEECCCCceeeeEEEeeCCc-EEEE-Ec-CCeEEEEeCCCCcEE-EEEEec
Q 048178 279 FKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGA-FFVE-SN-SSQLLLYEPGTGELR-DFELEC 339 (376)
Q Consensus 279 l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~-~~-~~~~~~yd~~t~~~~-~v~~~~ 339 (376)
=+||+.+-..+..+.++ +...-..-+++..+|+ .++. .. .+.+.+||..|++.. .+...+
T Consensus 311 ~~V~viD~~t~kv~~~i-~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~ 374 (386)
T 3sjl_D 311 RFVVVLDAKTGERLAKF-EMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLG 374 (386)
T ss_dssp EEEEEEETTTCCEEEEE-EEEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCC
T ss_pred CEEEEEECCCCeEEEEE-ECCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCC
Confidence 68999999888888888 6653233467777876 5444 33 678999999998644 454443
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=85.35 E-value=18 Score=31.35 Aligned_cols=54 Identities=9% Similarity=0.272 Sum_probs=35.4
Q ss_pred CCEEEEEEeCC-CceeeEEEECCCCceeeeEEEeeCC----cEEE-EEcCCeEEEEeCCC
Q 048178 276 DHCFKIWVMQK-KNWIKQSSVGPFIGIFQPLLFWKKG----AFFV-ESNSSQLLLYEPGT 329 (376)
Q Consensus 276 ~~~l~vW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~g----~i~~-~~~~~~~~~yd~~t 329 (376)
+..+.||.++. ..|..+..+........-+++.+++ .+++ ...++.+..||+++
T Consensus 188 D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 188 DNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp TSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred CCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 78899999976 6687776663222223344555544 4554 45678899999876
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=85.23 E-value=16 Score=30.79 Aligned_cols=192 Identities=11% Similarity=0.053 Sum_probs=98.9
Q ss_pred eeecceEEEeec-CCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcce
Q 048178 106 GLYCGIVFIEGL-NNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSL 184 (376)
Q Consensus 106 ~s~~Gll~~~~~-~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 184 (376)
...+|-+.+.+. ...++++||. ++...++.+... . . ..++..|+.. . +... . .....
T Consensus 69 ~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~--~-~-----~~~i~~~~~g-~--l~v~-~---------~~~~~ 126 (300)
T 2qc5_A 69 VSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPD--S-G-----PYGITEGLNG-D--IWFT-Q---------LNGDR 126 (300)
T ss_dssp ECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTT--C-C-----EEEEEECSTT-C--EEEE-E---------TTTTE
T ss_pred ECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCC--C-C-----CccceECCCC-C--EEEE-c---------cCCCe
Confidence 345666666654 5678899998 665544322111 1 1 2466666533 2 2111 1 11345
Q ss_pred EEEEEcCCCceEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEE
Q 048178 185 VTVYNLSTNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGI 262 (376)
Q Consensus 185 ~~vyss~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~ 262 (376)
+..|+.. +...... .+... ....++.. +|.+|+.. .. ...|..||. +.++..+.+|..... ...++.
T Consensus 127 i~~~~~~-g~~~~~~-~~~~~-~~~~~i~~d~~g~l~v~~-~~----~~~i~~~~~-~g~~~~~~~~~~~~~--~~~i~~ 195 (300)
T 2qc5_A 127 IGKLTAD-GTIYEYD-LPNKG-SYPAFITLGSDNALWFTE-NQ----NNSIGRITN-TGKLEEYPLPTNAAA--PVGITS 195 (300)
T ss_dssp EEEECTT-SCEEEEE-CSSTT-CCEEEEEECTTSSEEEEE-TT----TTEEEEECT-TCCEEEEECSSTTCC--EEEEEE
T ss_pred EEEECCC-CCEEEcc-CCCCC-CCceeEEECCCCCEEEEe-cC----CCeEEEECC-CCcEEEeeCCCCCCC--cceEEE
Confidence 6667666 5444332 11111 11123333 57766544 32 337999999 566666665543221 233444
Q ss_pred e-cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeee--EEEeeCCcEEEEEc-CCeEEEEeCCCCcEEEEEE
Q 048178 263 Y-DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQP--LLFWKKGAFFVESN-SSQLLLYEPGTGELRDFEL 337 (376)
Q Consensus 263 ~-~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~--~~~~~~g~i~~~~~-~~~~~~yd~~t~~~~~v~~ 337 (376)
- +|.|++.... ...+.++.. ++..... .+ +.. ...| +++.++|.+++... .+.+..||+ ++++..+.+
T Consensus 196 d~~g~l~v~~~~--~~~i~~~~~-~g~~~~~-~~-~~~-~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~ 267 (300)
T 2qc5_A 196 GNDGALWFVEIM--GNKIGRITT-TGEISEY-DI-PTP-NARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQL 267 (300)
T ss_dssp CTTSSEEEEETT--TTEEEEECT-TCCEEEE-EC-SST-TCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEEC
T ss_pred CCCCCEEEEccC--CCEEEEEcC-CCcEEEE-EC-CCC-CCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEEC
Confidence 3 5678777653 445555554 2444332 23 321 2234 44455788888864 478999999 456665544
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=84.96 E-value=17 Score=30.96 Aligned_cols=195 Identities=11% Similarity=0.102 Sum_probs=96.3
Q ss_pred cCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceE
Q 048178 117 LNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWR 196 (376)
Q Consensus 117 ~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~ 196 (376)
....++++||.+++...+..+...... . ...++.+|+..+. +.... . ...+.+|+.. +..+
T Consensus 44 ~~~~i~~~d~~~g~~~~~~~~~~~~~~-~----~~~~i~~~~~~g~--l~v~~----------~-~~~l~~~d~~-g~~~ 104 (314)
T 1pjx_A 44 PAGEILRIDLKTGKKTVICKPEVNGYG-G----IPAGCQCDRDANQ--LFVAD----------M-RLGLLVVQTD-GTFE 104 (314)
T ss_dssp ECCEEEEECTTTCCEEEEECCEETTEE-C----CEEEEEECSSSSE--EEEEE----------T-TTEEEEEETT-SCEE
T ss_pred CCCEEEEEeCCCCcEEEEEecccCCCC-C----CCceEEEecCCCc--EEEEE----------C-CCCEEEEeCC-CCEE
Confidence 356789999999887665431100000 0 1246666654222 22211 0 2267788887 6666
Q ss_pred ec-cccCcccc-CCCCeEEE--CceEEEEeeecC----------CCCccEEEEEECCCceEeeecCCCCCCCCCceeEEE
Q 048178 197 NL-KSIDYTMR-LSSERTYF--DGAFYWLLKLEN----------DNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGI 262 (376)
Q Consensus 197 ~~-~~~~~~~~-~~~~~v~~--~G~lywl~~~~~----------~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~ 262 (376)
.+ ........ .....+.+ +|.+|+...... ......|..+|.. .++..+.-. .. ....++.
T Consensus 105 ~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~--~~--~~~~i~~ 179 (314)
T 1pjx_A 105 EIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA--FQ--FPNGIAV 179 (314)
T ss_dssp ECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE--ES--SEEEEEE
T ss_pred EEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC--CC--CcceEEE
Confidence 54 32111111 11234444 577765443210 0001478889887 544433100 00 1123333
Q ss_pred e-----cCe-EEEEEecCCCCEEEEEEeC-CCceeeE---EEECCCC--ceeeeEEEeeCCcEEEEE-cCCeEEEEeCCC
Q 048178 263 Y-----DQS-LSLLLLDTVDHCFKIWVMQ-KKNWIKQ---SSVGPFI--GIFQPLLFWKKGAFFVES-NSSQLLLYEPGT 329 (376)
Q Consensus 263 ~-----~g~-L~l~~~~~~~~~l~vW~l~-~~~W~~~---~~i~~~~--~~~~~~~~~~~g~i~~~~-~~~~~~~yd~~t 329 (376)
. +|+ |++.... ...+.+|.++ ++..... ..+ +.. ....-+++.++|.+++.. ..+.+..||+++
T Consensus 180 ~~~~d~dg~~l~v~~~~--~~~i~~~~~~~~g~~~~~~~~~~~-~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~ 256 (314)
T 1pjx_A 180 RHMNDGRPYQLIVAETP--TKKLWSYDIKGPAKIENKKVWGHI-PGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDG 256 (314)
T ss_dssp EECTTSCEEEEEEEETT--TTEEEEEEEEETTEEEEEEEEEEC-CCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTC
T ss_pred ecccCCCCCEEEEEECC--CCeEEEEECCCCCccccceEEEEC-CCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCC
Confidence 3 343 5555433 5778888776 3444332 222 211 122234445578898875 467899999995
Q ss_pred Cc-EEEEEEe
Q 048178 330 GE-LRDFELE 338 (376)
Q Consensus 330 ~~-~~~v~~~ 338 (376)
++ .+.+...
T Consensus 257 g~~~~~~~~~ 266 (314)
T 1pjx_A 257 GQPKMRIRCP 266 (314)
T ss_dssp BSCSEEEECS
T ss_pred CcEeEEEeCC
Confidence 44 4455443
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.93 E-value=19 Score=31.43 Aligned_cols=198 Identities=11% Similarity=0.060 Sum_probs=97.8
Q ss_pred eeeeeecceEEEeecCCeEEEEecCccceee-cCCCCCCCCCccccccceEEEeeeCC-CCCeEEEEEEEEEecCCCCCC
Q 048178 103 SFKGLYCGIVFIEGLNNRITLWNIATRESVT-LPKYRAIIPQYTRVFGTKIGFGLDPK-TKDYKVVLILTLWDEKRDSSC 180 (376)
Q Consensus 103 ~~~~s~~Gll~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~-~~~ykvv~~~~~~~~~~~~~~ 180 (376)
.+.++.+|-+.+-+....+.++|..+++... +.... ... ...+.++|. .+.+- +.. .
T Consensus 88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~----~~~-----v~~~~~~~~~~~~~l-~s~-----------s 146 (343)
T 3lrv_A 88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDS----ANE-----IIYMYGHNEVNTEYF-IWA-----------D 146 (343)
T ss_dssp EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCC----SSC-----EEEEECCC---CCEE-EEE-----------E
T ss_pred eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCC----CCC-----EEEEEcCCCCCCCEE-EEE-----------e
Confidence 4556677888777776777788888877332 21111 000 245666662 23332 222 1
Q ss_pred CcceEEEEEcCCCceEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCce
Q 048178 181 PFSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDV 258 (376)
Q Consensus 181 ~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~ 258 (376)
....+.+|+.+++.-......... ....++.+ +|.+...+.. ...|..+|+++.+-....+...... .-.
T Consensus 147 ~dg~i~~wd~~~~~~~~~~~~~~~--~~i~~~~~~pdg~~lasg~~-----dg~i~iwd~~~~~~~~~~~~~~h~~-~v~ 218 (343)
T 3lrv_A 147 NRGTIGFQSYEDDSQYIVHSAKSD--VEYSSGVLHKDSLLLALYSP-----DGILDVYNLSSPDQASSRFPVDEEA-KIK 218 (343)
T ss_dssp TTCCEEEEESSSSCEEEEECCCSS--CCCCEEEECTTSCEEEEECT-----TSCEEEEESSCTTSCCEECCCCTTS-CEE
T ss_pred CCCcEEEEECCCCcEEEEEecCCC--CceEEEEECCCCCEEEEEcC-----CCEEEEEECCCCCCCccEEeccCCC-CEE
Confidence 245788899887754322111111 11123333 4554444332 3378899998765431222221111 112
Q ss_pred eEEEe-cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCC--Cce---eeeEEEeeCCcEEEE-Ec-CCeEEEEeC--C
Q 048178 259 TLGIY-DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPF--IGI---FQPLLFWKKGAFFVE-SN-SSQLLLYEP--G 328 (376)
Q Consensus 259 ~l~~~-~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~--~~~---~~~~~~~~~g~i~~~-~~-~~~~~~yd~--~ 328 (376)
.+.-. +|...+...+ . .+.||.+...+ ....+.++ ... ...+++..+|..++. .. ++.+.+|+. .
T Consensus 219 ~l~fs~~g~~l~s~~~--~-~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 219 EVKFADNGYWMVVECD--Q-TVVCFDLRKDV--GTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp EEEECTTSSEEEEEES--S-BEEEEETTSST--TCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred EEEEeCCCCEEEEEeC--C-eEEEEEcCCCC--cceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence 33333 4554444443 3 99999988721 11111110 000 123666778887766 33 677888877 4
Q ss_pred CCcEEE
Q 048178 329 TGELRD 334 (376)
Q Consensus 329 t~~~~~ 334 (376)
++.|+.
T Consensus 294 ~~~~~~ 299 (343)
T 3lrv_A 294 TKNWTK 299 (343)
T ss_dssp TCSEEE
T ss_pred ccceEe
Confidence 455765
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=84.90 E-value=16 Score=30.43 Aligned_cols=186 Identities=11% Similarity=0.105 Sum_probs=97.6
Q ss_pred eecceEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEE
Q 048178 107 LYCGIVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVT 186 (376)
Q Consensus 107 s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 186 (376)
..+|-+.+.+....++++|+.++....++..... ...++.+|+... +... . .....+.
T Consensus 75 ~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~~~~~---------~p~~i~~~~~g~---l~v~-~---------~~~~~i~ 132 (270)
T 1rwi_B 75 DGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLN---------YPEGLAVDTQGA---VYVA-D---------RGNNRVV 132 (270)
T ss_dssp CTTCCEEEEETTTEEEEECTTCSCCEECCCCSCS---------SEEEEEECTTCC---EEEE-E---------GGGTEEE
T ss_pred CCCCCEEEEcCCCEEEEEeCCCceEeeeecCCcC---------CCcceEECCCCC---EEEE-E---------CCCCEEE
Confidence 3466666665566789999988776655432211 124677776432 2222 1 1134666
Q ss_pred EEEcCCCceEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEEe-
Q 048178 187 VYNLSTNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIY- 263 (376)
Q Consensus 187 vyss~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~- 263 (376)
+|+.++......... .. ....++.+ +|.+|+.... ...|..||..+........... .....++.-
T Consensus 133 ~~~~~~~~~~~~~~~--~~-~~p~~i~~~~~g~l~v~~~~-----~~~i~~~~~~~~~~~~~~~~~~---~~p~~i~~d~ 201 (270)
T 1rwi_B 133 KLAAGSKTQTVLPFT--GL-NDPDGVAVDNSGNVYVTDTD-----NNRVVKLEAESNNQVVLPFTDI---TAPWGIAVDE 201 (270)
T ss_dssp EECTTCCSCEECCCC--SC-CSCCCEEECTTCCEEEEEGG-----GTEEEEECTTTCCEEECCCSSC---CSEEEEEECT
T ss_pred EEECCCceeEeeccc--cC-CCceeEEEeCCCCEEEEECC-----CCEEEEEecCCCceEeecccCC---CCceEEEECC
Confidence 776555443322111 11 11124444 5887665432 3479999988765543322111 112344443
Q ss_pred cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeee--EEEeeCCcEEEEE-cCCeEEEEeCCCCc
Q 048178 264 DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQP--LLFWKKGAFFVES-NSSQLLLYEPGTGE 331 (376)
Q Consensus 264 ~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~--~~~~~~g~i~~~~-~~~~~~~yd~~t~~ 331 (376)
+|.|++.... ...+.+|..+... . ..+ +...+..| +++.++|.+++.. ..+.+..|++..++
T Consensus 202 ~g~l~v~~~~--~~~v~~~~~~~~~-~--~~~-~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 202 AGTVYVTEHN--TNQVVKLLAGSTT-S--TVL-PFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp TCCEEEEETT--TSCEEEECTTCSC-C--EEC-CCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred CCCEEEEECC--CCcEEEEcCCCCc-c--eee-ccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 4567777653 4566666655411 1 112 22222233 4445578888875 46789999887654
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=84.71 E-value=17 Score=30.66 Aligned_cols=188 Identities=11% Similarity=0.156 Sum_probs=99.9
Q ss_pred eecceEEEeec--CCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcce
Q 048178 107 LYCGIVFIEGL--NNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSL 184 (376)
Q Consensus 107 s~~Gll~~~~~--~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 184 (376)
..+|-+.+.+. ...+.++|+..+....+...... . ..++.+|+.. . ++.. . .....
T Consensus 86 ~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~~~----~-----~~~i~~~~~g-~--l~v~-~---------~~~~~ 143 (286)
T 1q7f_A 86 RNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQ----H-----PRGVTVDNKG-R--IIVV-E---------CKVMR 143 (286)
T ss_dssp TTTTEEEEEECGGGCEEEEECTTSCEEEEECTTTCS----C-----EEEEEECTTS-C--EEEE-E---------TTTTE
T ss_pred cCCCeEEEEcCCCCCEEEEECCCCcEEEEecCccCC----C-----ceEEEEeCCC-C--EEEE-E---------CCCCE
Confidence 35777766663 56789999655444444332111 0 2467777643 2 2222 1 12456
Q ss_pred EEEEEcCCCceEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEE
Q 048178 185 VTVYNLSTNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGI 262 (376)
Q Consensus 185 ~~vyss~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~ 262 (376)
+.+|+..+..-+.+... ... ....++.+ +|.+|..... ...|..||...+....+..+.... ....++.
T Consensus 144 i~~~~~~g~~~~~~~~~-~~~-~~p~~i~~~~~g~l~v~~~~-----~~~i~~~~~~g~~~~~~~~~g~~~--~p~~i~~ 214 (286)
T 1q7f_A 144 VIIFDQNGNVLHKFGCS-KHL-EFPNGVVVNDKQEIFISDNR-----AHCVKVFNYEGQYLRQIGGEGITN--YPIGVGI 214 (286)
T ss_dssp EEEECTTSCEEEEEECT-TTC-SSEEEEEECSSSEEEEEEGG-----GTEEEEEETTCCEEEEESCTTTSC--SEEEEEE
T ss_pred EEEEcCCCCEEEEeCCC-Ccc-CCcEEEEECCCCCEEEEECC-----CCEEEEEcCCCCEEEEEccCCccC--CCcEEEE
Confidence 77787655443333211 001 11124444 4776654332 348999999777666554332111 1233444
Q ss_pred e-cCeEEEEEecCCC-CEEEEEEeCCCceeeEEEECCCC-ceeeeEEEeeCCcEEEEEcCCeEEEEeCCC
Q 048178 263 Y-DQSLSLLLLDTVD-HCFKIWVMQKKNWIKQSSVGPFI-GIFQPLLFWKKGAFFVESNSSQLLLYEPGT 329 (376)
Q Consensus 263 ~-~g~L~l~~~~~~~-~~l~vW~l~~~~W~~~~~i~~~~-~~~~~~~~~~~g~i~~~~~~~~~~~yd~~t 329 (376)
- +|.|++.... . ..+.+|..+ ++-...... ... ....-+++.++|.+++...++.+.+|+...
T Consensus 215 d~~G~l~v~~~~--~~~~i~~~~~~-g~~~~~~~~-~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 215 NSNGEILIADNH--NNFNLTIFTQD-GQLISALES-KVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQ 280 (286)
T ss_dssp CTTCCEEEEECS--SSCEEEEECTT-SCEEEEEEE-SSCCSCEEEEEEETTTEEEEEETTTEEEEEECSC
T ss_pred CCCCCEEEEeCC--CCEEEEEECCC-CCEEEEEcc-cCCCCcceeEEECCCCcEEEECCCCeEEEEEccc
Confidence 3 6778877763 3 388888744 333322222 111 112335666788888887777888888754
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=84.34 E-value=23 Score=31.78 Aligned_cols=193 Identities=10% Similarity=0.037 Sum_probs=101.3
Q ss_pred eeeecceEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcce
Q 048178 105 KGLYCGIVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSL 184 (376)
Q Consensus 105 ~~s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 184 (376)
++..++.++.......+.|||..+++...+-.... ... ...+.+.+. +.+-++.- ....
T Consensus 99 ~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~---~~~-----v~~v~~s~~-~~~l~~~~------------~dg~ 157 (401)
T 4aez_A 99 LDWSNLNVVAVALERNVYVWNADSGSVSALAETDE---STY-----VASVKWSHD-GSFLSVGL------------GNGL 157 (401)
T ss_dssp EEECTTSEEEEEETTEEEEEETTTCCEEEEEECCT---TCC-----EEEEEECTT-SSEEEEEE------------TTSC
T ss_pred EeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCC---CCC-----EEEEEECCC-CCEEEEEC------------CCCe
Confidence 33334445555566789999999998766433321 111 235666652 33322221 1447
Q ss_pred EEEEEcCCCceE-eccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEEe
Q 048178 185 VTVYNLSTNSWR-NLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIY 263 (376)
Q Consensus 185 ~~vyss~t~~W~-~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~ 263 (376)
+.+|+..++.-. .+... ......+..+|.+...+.. ...|..+|+....-....+..... .-..+...
T Consensus 158 i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~~ 226 (401)
T 4aez_A 158 VDIYDVESQTKLRTMAGH----QARVGCLSWNRHVLSSGSR-----SGAIHHHDVRIANHQIGTLQGHSS--EVCGLAWR 226 (401)
T ss_dssp EEEEETTTCCEEEEECCC----SSCEEEEEEETTEEEEEET-----TSEEEEEETTSSSCEEEEEECCSS--CEEEEEEC
T ss_pred EEEEECcCCeEEEEecCC----CCceEEEEECCCEEEEEcC-----CCCEEEEecccCcceeeEEcCCCC--CeeEEEEc
Confidence 888998876432 22111 1112345556765544433 347889998743221111111111 11223333
Q ss_pred -cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCC-cEEEEE---cCCeEEEEeCCCCcEE
Q 048178 264 -DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKG-AFFVES---NSSQLLLYEPGTGELR 333 (376)
Q Consensus 264 -~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g-~i~~~~---~~~~~~~yd~~t~~~~ 333 (376)
+|.+.+.+.. +..+.||.+... ..+..+........-+++..++ .+++.. .++.+..||+++++..
T Consensus 227 ~~~~~l~s~~~--d~~v~iwd~~~~--~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~ 297 (401)
T 4aez_A 227 SDGLQLASGGN--DNVVQIWDARSS--IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV 297 (401)
T ss_dssp TTSSEEEEEET--TSCEEEEETTCS--SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE
T ss_pred CCCCEEEEEeC--CCeEEEccCCCC--CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE
Confidence 5555555554 688999998872 2333332222223445656555 466654 3788999999887644
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=83.62 E-value=38 Score=33.82 Aligned_cols=196 Identities=10% Similarity=0.095 Sum_probs=100.8
Q ss_pred ecce-EEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEE
Q 048178 108 YCGI-VFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVT 186 (376)
Q Consensus 108 ~~Gl-l~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 186 (376)
.+|- |.+.....-++++||.|++...++.......... ...+..|+... +.+.. ...+.
T Consensus 415 ~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~-----v~~i~~d~~g~----lwigt-----------~~Gl~ 474 (795)
T 4a2l_A 415 EKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNEN-----VYAILPDGEGN----LWLGT-----------LSALV 474 (795)
T ss_dssp TTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSC-----EEEEEECSSSC----EEEEE-----------SSCEE
T ss_pred CCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCe-----eEEEEECCCCC----EEEEe-----------cCcee
Confidence 4564 5555554567899999998877764211111111 23444554221 23322 13677
Q ss_pred EEEcCCCceEecccc--Ccccc-CCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEeeec-CCCC--CCCCCce
Q 048178 187 VYNLSTNSWRNLKSI--DYTMR-LSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQ-GPCT--LESSLDV 258 (376)
Q Consensus 187 vyss~t~~W~~~~~~--~~~~~-~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~-lP~~--~~~~~~~ 258 (376)
+|+.+++.|+..... +.... ....+++. +|.+ |++... .+..||..++++ .+. .+.. .....-.
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~l-Wigt~~------Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~ 546 (795)
T 4a2l_A 475 RFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRL-WIGGEE------GLSVFKQEGLDI-QKASILPVSNVTKLFTN 546 (795)
T ss_dssp EEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCE-EEEESS------CEEEEEEETTEE-EECCCSCSCGGGGSCEE
T ss_pred EEeCCCCeEEEccccccccccCCceEEEEEECCCCCE-EEEeCC------ceEEEeCCCCeE-EEecCCCCCCCCCCeeE
Confidence 899999988876532 11111 11123333 3444 555432 688999988887 442 1111 1111113
Q ss_pred eEEE-ecCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCc-eeeeEEEeeCCcEEEEEcCCeEEEEeCCCCcEEEEE
Q 048178 259 TLGI-YDQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIG-IFQPLLFWKKGAFFVESNSSQLLLYEPGTGELRDFE 336 (376)
Q Consensus 259 ~l~~-~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~-~~~~~~~~~~g~i~~~~~~~~~~~yd~~t~~~~~v~ 336 (376)
.+.+ -+|.|.+... . .+..|..+..++.....-+-++. ...-+...++|.|++... ..+..||+++++++.+.
T Consensus 547 ~i~~d~~g~lWigT~---~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t~-~Gl~~~~~~~~~~~~~~ 621 (795)
T 4a2l_A 547 CIYEASNGIIWVGTR---E-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLSTN-RGISCFNPETEKFRNFT 621 (795)
T ss_dssp EEEECTTSCEEEEES---S-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEET-TEEEEEETTTTEEEEEC
T ss_pred EEEECCCCCEEEEeC---C-CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEcC-CceEEEcCCCCcEEEcC
Confidence 3444 3566776554 2 34445444444433211111111 122223334678999886 45999999999887653
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=83.44 E-value=21 Score=30.68 Aligned_cols=148 Identities=9% Similarity=0.115 Sum_probs=78.9
Q ss_pred cceEEEEEcCC-CceEecc--ccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECC--CceEe---ee-cCCC
Q 048178 182 FSLVTVYNLST-NSWRNLK--SIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMA--EEKFQ---EI-QGPC 250 (376)
Q Consensus 182 ~~~~~vyss~t-~~W~~~~--~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~--~e~~~---~i-~lP~ 250 (376)
...+.+|+..+ +....+. ............+.+ +|...+++... ...|..+|+. +..+. .+ .+|.
T Consensus 150 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~----~~~i~~~~~~~~~g~~~~~~~~~~~~~ 225 (343)
T 1ri6_A 150 QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL----NSSVDVWELKDPHGNIECVQTLDMMPE 225 (343)
T ss_dssp GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT----TTEEEEEESSCTTSCCEEEEEEECSCT
T ss_pred CCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCC----CCEEEEEEecCCCCcEEEEeeccccCc
Confidence 45788898887 6665432 110000011112333 46533333322 3478888884 34332 23 3454
Q ss_pred CCCCCCce-eEEEe-cCe-EEEEEecCCCCEEEEEEeCC--CceeeEEEECCCCceeeeEEEeeCCcEE-EEE-cCCeEE
Q 048178 251 TLESSLDV-TLGIY-DQS-LSLLLLDTVDHCFKIWVMQK--KNWIKQSSVGPFIGIFQPLLFWKKGAFF-VES-NSSQLL 323 (376)
Q Consensus 251 ~~~~~~~~-~l~~~-~g~-L~l~~~~~~~~~l~vW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~g~i~-~~~-~~~~~~ 323 (376)
........ .+... +|+ |++.. .....+.+|.++. +.+..+..+ +......-+++.++|+.+ +.. .++.+.
T Consensus 226 ~~~~~~~~~~i~~s~dg~~l~v~~--~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~ 302 (343)
T 1ri6_A 226 NFSDTRWAADIHITPDGRHLYACD--RTASLITVFSVSEDGSVLSKEGFQ-PTETQPRGFNVDHSGKYLIAAGQKSHHIS 302 (343)
T ss_dssp TCCSCCCEEEEEECTTSSEEEEEE--TTTTEEEEEEECTTSCCEEEEEEE-ECSSSCCCEEECTTSSEEEEECTTTCEEE
T ss_pred cccccCCccceEECCCCCEEEEEe--cCCCEEEEEEEcCCCCceEEeeee-cCCCccceEEECCCCCEEEEecCCCCeEE
Confidence 32211112 23333 454 54443 3378999999984 567777777 433223446777788744 444 356677
Q ss_pred EE--eCCCCcEEEEE
Q 048178 324 LY--EPGTGELRDFE 336 (376)
Q Consensus 324 ~y--d~~t~~~~~v~ 336 (376)
+| |+++++++.+.
T Consensus 303 v~~~d~~~g~~~~~~ 317 (343)
T 1ri6_A 303 VYEIVGEQGLLHEKG 317 (343)
T ss_dssp EEEEETTTTEEEEEE
T ss_pred EEEEcCCCceeeEcc
Confidence 77 78888888774
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.43 E-value=22 Score=30.85 Aligned_cols=189 Identities=7% Similarity=0.044 Sum_probs=90.7
Q ss_pred cc-eEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEE
Q 048178 109 CG-IVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTV 187 (376)
Q Consensus 109 ~G-ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~v 187 (376)
+| +|+.......+.|||..+++...+..... . ...+.+.+..+.-.++... ....+.+
T Consensus 97 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~----~------v~~~~~~~~~~~~~l~~~~-----------~dg~i~v 155 (368)
T 3mmy_A 97 DGSKVFTASCDKTAKMWDLSSNQAIQIAQHDA----P------VKTIHWIKAPNYSCVMTGS-----------WDKTLKF 155 (368)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECSS----C------EEEEEEEECSSCEEEEEEE-----------TTSEEEE
T ss_pred CCCEEEEEcCCCcEEEEEcCCCCceeeccccC----c------eEEEEEEeCCCCCEEEEcc-----------CCCcEEE
Confidence 44 44545557788999999988766432111 1 2344442222222222221 2457888
Q ss_pred EEcCCCceE-eccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceE--eeecCCCCCCCCCceeEEEe-
Q 048178 188 YNLSTNSWR-NLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKF--QEIQGPCTLESSLDVTLGIY- 263 (376)
Q Consensus 188 yss~t~~W~-~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~--~~i~lP~~~~~~~~~~l~~~- 263 (376)
|+.+++.-. .+. .+ .....+...+....++.. ...+..+|+.+..- ..+..+..... ..+...
T Consensus 156 wd~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 222 (368)
T 3mmy_A 156 WDTRSSNPMMVLQ-LP----ERCYCADVIYPMAVVATA-----ERGLIVYQLENQPSEFRRIESPLKHQH---RCVAIFK 222 (368)
T ss_dssp ECSSCSSCSEEEE-CS----SCEEEEEEETTEEEEEEG-----GGCEEEEECSSSCEEEEECCCSCSSCE---EEEEEEE
T ss_pred EECCCCcEEEEEe-cC----CCceEEEecCCeeEEEeC-----CCcEEEEEeccccchhhhccccccCCC---ceEEEcc
Confidence 888776311 111 10 111122223333333333 23678888876543 33332222211 222222
Q ss_pred cC----eEEEEEecCCCCEEEEEEeCCC-ceeeEEEECCCCc------------eeeeEEEeeCCcEEE-EEcCCeEEEE
Q 048178 264 DQ----SLSLLLLDTVDHCFKIWVMQKK-NWIKQSSVGPFIG------------IFQPLLFWKKGAFFV-ESNSSQLLLY 325 (376)
Q Consensus 264 ~g----~L~l~~~~~~~~~l~vW~l~~~-~W~~~~~i~~~~~------------~~~~~~~~~~g~i~~-~~~~~~~~~y 325 (376)
++ ...++... +..+.||.++.. .-..+..+..... -..-+++.++|..++ ...++.+.+|
T Consensus 223 ~~~~~~~~~~~~~~--dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iw 300 (368)
T 3mmy_A 223 DKQNKPTGFALGSI--EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW 300 (368)
T ss_dssp CTTSCEEEEEEEET--TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred cCCCCCCeEEEecC--CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEE
Confidence 11 12333333 789999999872 1111122211110 123345566777555 4567889999
Q ss_pred eCCCCcEE
Q 048178 326 EPGTGELR 333 (376)
Q Consensus 326 d~~t~~~~ 333 (376)
|+++++..
T Consensus 301 d~~~~~~~ 308 (368)
T 3mmy_A 301 DKDARTKL 308 (368)
T ss_dssp ETTTTEEE
T ss_pred ECCCCcEE
Confidence 99987543
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=83.26 E-value=21 Score=30.50 Aligned_cols=191 Identities=11% Similarity=0.042 Sum_probs=92.6
Q ss_pred cceEEEeecCCeEEEEecCccceee-cCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEE
Q 048178 109 CGIVFIEGLNNRITLWNIATRESVT-LPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTV 187 (376)
Q Consensus 109 ~Gll~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~v 187 (376)
+.+|........++++|+.|++.+. ++...... . .....++.. . ++. .. ...+..
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~---~------~~~~~~pdG-~--ilv-s~-----------~~~V~~ 60 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWE---C------NSVAATKAG-E--ILF-SY-----------SKGAKM 60 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCC---C------CEEEECTTS-C--EEE-EC-----------BSEEEE
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCC---C------cCeEECCCC-C--EEE-eC-----------CCCEEE
Confidence 3444444557788999999988543 33321000 1 122333322 2 222 11 345777
Q ss_pred EEcCCC-ceEeccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCC--CceeEE-Ee
Q 048178 188 YNLSTN-SWRNLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESS--LDVTLG-IY 263 (376)
Q Consensus 188 yss~t~-~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~--~~~~l~-~~ 263 (376)
|+.... .|+.-... ........+.-+|.++...... ...+++||.+.+....+.+....... ....+. ..
T Consensus 61 ~d~~G~~~W~~~~~~--~~~~~~~~~~~dG~~lv~~~~~----~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~ 134 (276)
T 3no2_A 61 ITRDGRELWNIAAPA--GCEMQTARILPDGNALVAWCGH----PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNK 134 (276)
T ss_dssp ECTTSCEEEEEECCT--TCEEEEEEECTTSCEEEEEEST----TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECT
T ss_pred ECCCCCEEEEEcCCC--CccccccEECCCCCEEEEecCC----CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECC
Confidence 887322 47643210 0111112334567766554321 23688899866544444443221110 111122 23
Q ss_pred cCeEEEEEecCCCCEEEEEEeCC-CceeeEEEECCCCceeeeEEEeeCCcEEEEE-cCCeEEEEeCCCCcE-EEEE
Q 048178 264 DQSLSLLLLDTVDHCFKIWVMQK-KNWIKQSSVGPFIGIFQPLLFWKKGAFFVES-NSSQLLLYEPGTGEL-RDFE 336 (376)
Q Consensus 264 ~g~L~l~~~~~~~~~l~vW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~-~~~~~~~yd~~t~~~-~~v~ 336 (376)
+|.+.++... ...+.+|..+. ..|. +.. +.... . ..+..+|.+++.. ..++++.+|++|+++ .++.
T Consensus 135 ~G~~lv~~~~--~~~v~~~d~~G~~~w~--~~~-~~~~~-~-~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 135 KGNYLVPLFA--TSEVREIAPNGQLLNS--VKL-SGTPF-S-SAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp TSCEEEEETT--TTEEEEECTTSCEEEE--EEC-SSCCC-E-EEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred CCCEEEEecC--CCEEEEECCCCCEEEE--EEC-CCCcc-c-eeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence 6665555443 56677776663 3344 333 21111 1 2334578877764 456799999996543 4443
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=83.25 E-value=19 Score=29.96 Aligned_cols=191 Identities=15% Similarity=0.148 Sum_probs=94.9
Q ss_pred eeecceEEE-e-ecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcc
Q 048178 106 GLYCGIVFI-E-GLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFS 183 (376)
Q Consensus 106 ~s~~Gll~~-~-~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~ 183 (376)
-+.+|-+.+ . .....+.++|+-++....++...... ..++.+|+..+ +... . . ..
T Consensus 31 ~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---------p~~i~~~~~g~---l~v~-~---------~-~~ 87 (270)
T 1rwi_B 31 VDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQ---------PQGLAVDGAGT---VYVT-D---------F-NN 87 (270)
T ss_dssp ECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCS---------CCCEEECTTCC---EEEE-E---------T-TT
T ss_pred ECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCC---------cceeEECCCCC---EEEE-c---------C-CC
Confidence 344566665 5 34567889999887766654322111 13466665432 2221 1 1 33
Q ss_pred eEEEEEcCCCceEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEE
Q 048178 184 LVTVYNLSTNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLG 261 (376)
Q Consensus 184 ~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~ 261 (376)
.+.+|+..++.-....... . ....++.+ +|.+|+.... ...|..+|..+......... ... ....++
T Consensus 88 ~i~~~d~~~~~~~~~~~~~--~-~~p~~i~~~~~g~l~v~~~~-----~~~i~~~~~~~~~~~~~~~~-~~~--~p~~i~ 156 (270)
T 1rwi_B 88 RVVTLAAGSNNQTVLPFDG--L-NYPEGLAVDTQGAVYVADRG-----NNRVVKLAAGSKTQTVLPFT-GLN--DPDGVA 156 (270)
T ss_dssp EEEEECTTCSCCEECCCCS--C-SSEEEEEECTTCCEEEEEGG-----GTEEEEECTTCCSCEECCCC-SCC--SCCCEE
T ss_pred EEEEEeCCCceEeeeecCC--c-CCCcceEECCCCCEEEEECC-----CCEEEEEECCCceeEeeccc-cCC--CceeEE
Confidence 6777877766444332110 0 11123333 5777655432 33788888766543322111 111 112344
Q ss_pred Ee-cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeee--EEEeeCCcEEEEEc-CCeEEEEeCCCCcEEEEE
Q 048178 262 IY-DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQP--LLFWKKGAFFVESN-SSQLLLYEPGTGELRDFE 336 (376)
Q Consensus 262 ~~-~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~--~~~~~~g~i~~~~~-~~~~~~yd~~t~~~~~v~ 336 (376)
.. +|+|++.... ...+.+|..+... ... . ....+..| +++..+|.+++... .+.+..||++++....+.
T Consensus 157 ~~~~g~l~v~~~~--~~~i~~~~~~~~~--~~~-~-~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~ 229 (270)
T 1rwi_B 157 VDNSGNVYVTDTD--NNRVVKLEAESNN--QVV-L-PFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLP 229 (270)
T ss_dssp ECTTCCEEEEEGG--GTEEEEECTTTCC--EEE-C-CCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECC
T ss_pred EeCCCCEEEEECC--CCEEEEEecCCCc--eEe-e-cccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeec
Confidence 44 5777777653 4566666655421 111 1 11112233 44455778888864 567999999887655543
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=82.31 E-value=20 Score=29.74 Aligned_cols=197 Identities=10% Similarity=-0.027 Sum_probs=95.6
Q ss_pred eecceEEEeecCCeEEEEecCc-cceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceE
Q 048178 107 LYCGIVFIEGLNNRITLWNIAT-RESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLV 185 (376)
Q Consensus 107 s~~Gll~~~~~~~~~~V~NP~T-~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 185 (376)
+-+|-.++......+++||..+ ++...+...... .. ...+.+.+.. .+ ++.... .. .....+
T Consensus 50 spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~~------~~~~~~spdg-~~-l~~~~~---~~----~~~~~l 112 (297)
T 2ojh_A 50 SPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFAT--IC------NNDHGISPDG-AL-YAISDK---VE----FGKSAI 112 (297)
T ss_dssp CTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCC--CB------CSCCEECTTS-SE-EEEEEC---TT----TSSCEE
T ss_pred CCCCCEEEEEcCCeEEEEeCCCCCCceEecccccc--cc------ccceEECCCC-CE-EEEEEe---CC----CCcceE
Confidence 3445444444456789999999 887766543211 00 0123334332 22 222210 11 125677
Q ss_pred EEEEcCCCceEeccccCccccCCCCeEEE--Cce-EEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEE
Q 048178 186 TVYNLSTNSWRNLKSIDYTMRLSSERTYF--DGA-FYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGI 262 (376)
Q Consensus 186 ~vyss~t~~W~~~~~~~~~~~~~~~~v~~--~G~-lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~ 262 (376)
.+++..++.-+.+..... ...+.+ +|. +++...... ...|..+|..+.....+..... ....+..
T Consensus 113 ~~~~~~~~~~~~~~~~~~-----~~~~~~spdg~~l~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~ 180 (297)
T 2ojh_A 113 YLLPSTGGTPRLMTKNLP-----SYWHGWSPDGKSFTYCGIRDQ---VFDIYSMDIDSGVETRLTHGEG----RNDGPDY 180 (297)
T ss_dssp EEEETTCCCCEECCSSSS-----EEEEEECTTSSEEEEEEEETT---EEEEEEEETTTCCEEECCCSSS----CEEEEEE
T ss_pred EEEECCCCceEEeecCCC-----ccceEECCCCCEEEEEECCCC---ceEEEEEECCCCcceEcccCCC----ccccceE
Confidence 777777766555432211 111112 454 333333321 3467777777665544422111 1122333
Q ss_pred e-cCeEEEEEecCCCCEEEEEEeCC--CceeeEEEECCCCceeeeEEEeeCCcEE-EEEcC-----------CeEEEEeC
Q 048178 263 Y-DQSLSLLLLDTVDHCFKIWVMQK--KNWIKQSSVGPFIGIFQPLLFWKKGAFF-VESNS-----------SQLLLYEP 327 (376)
Q Consensus 263 ~-~g~L~l~~~~~~~~~l~vW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~g~i~-~~~~~-----------~~~~~yd~ 327 (376)
. +|+..++.. .....+.||.++. .. ...+.........+.+..+|+.+ +...+ ..++.||+
T Consensus 181 s~dg~~l~~~~-~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~ 256 (297)
T 2ojh_A 181 SPDGRWIYFNS-SRTGQMQIWRVRVDGSS---VERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDM 256 (297)
T ss_dssp CTTSSEEEEEE-CTTSSCEEEEEETTSSC---EEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEET
T ss_pred CCCCCEEEEEe-cCCCCccEEEECCCCCC---cEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEec
Confidence 2 565433333 1256788998873 22 22331122223335566678744 44322 45999999
Q ss_pred CCCcEEEEE
Q 048178 328 GTGELRDFE 336 (376)
Q Consensus 328 ~t~~~~~v~ 336 (376)
++++.+.+.
T Consensus 257 ~~~~~~~~~ 265 (297)
T 2ojh_A 257 DGGNVETLF 265 (297)
T ss_dssp TSCSCEEEE
T ss_pred CCCCceeee
Confidence 998876653
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.39 E-value=28 Score=30.81 Aligned_cols=187 Identities=9% Similarity=-0.042 Sum_probs=95.0
Q ss_pred eeeecceEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcce
Q 048178 105 KGLYCGIVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSL 184 (376)
Q Consensus 105 ~~s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 184 (376)
.-+.+|.++.......+.+||..+++....-... ... ...+.+.+..+ + ++... ....
T Consensus 213 ~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~----~~~-----i~~~~~~~~~~-~-l~~~~-----------~d~~ 270 (425)
T 1r5m_A 213 EWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGH----HGP-----ISVLEFNDTNK-L-LLSAS-----------DDGT 270 (425)
T ss_dssp EEEETTEEEEECGGGCEEEEETTCSSCSEEECCC----SSC-----EEEEEEETTTT-E-EEEEE-----------TTSC
T ss_pred EEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccC----CCc-----eEEEEECCCCC-E-EEEEc-----------CCCE
Confidence 3355777777777778899999887543221110 111 23566665433 2 22221 1446
Q ss_pred EEEEEcCCCceE-eccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEeee-cCCCCCCCCCceeE
Q 048178 185 VTVYNLSTNSWR-NLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCTLESSLDVTL 260 (376)
Q Consensus 185 ~~vyss~t~~W~-~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l 260 (376)
+.+|+.+++.-. .+... ......+.+ +| +.+.... ...|..+|+.+.+.... ..... .-..+
T Consensus 271 i~i~d~~~~~~~~~~~~~----~~~i~~~~~~~~~--~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~----~i~~~ 336 (425)
T 1r5m_A 271 LRIWHGGNGNSQNCFYGH----SQSIVSASWVGDD--KVISCSM----DGSVRLWSLKQNTLLALSIVDGV----PIFAG 336 (425)
T ss_dssp EEEECSSSBSCSEEECCC----SSCEEEEEEETTT--EEEEEET----TSEEEEEETTTTEEEEEEECTTC----CEEEE
T ss_pred EEEEECCCCccceEecCC----CccEEEEEECCCC--EEEEEeC----CCcEEEEECCCCcEeEecccCCc----cEEEE
Confidence 788887765321 11111 001112222 45 3333333 34899999987654332 32111 11223
Q ss_pred EEe-cCeEEEEEecCCCCEEEEEEeCCCc------------------eeeEEEECCCC-c-eeeeEEEeeCCcEE-EEEc
Q 048178 261 GIY-DQSLSLLLLDTVDHCFKIWVMQKKN------------------WIKQSSVGPFI-G-IFQPLLFWKKGAFF-VESN 318 (376)
Q Consensus 261 ~~~-~g~L~l~~~~~~~~~l~vW~l~~~~------------------W~~~~~i~~~~-~-~~~~~~~~~~g~i~-~~~~ 318 (376)
... +|.+.++... +..+.||.++... +..+..+.... . -..-+.+..+|..+ ....
T Consensus 337 ~~s~~~~~l~~~~~--dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 414 (425)
T 1r5m_A 337 RISQDGQKYAVAFM--DGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYS 414 (425)
T ss_dssp EECTTSSEEEEEET--TSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEES
T ss_pred EEcCCCCEEEEEEC--CCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEec
Confidence 332 4555555544 6789999987621 11445552121 1 23445556677755 4566
Q ss_pred CCeEEEEeCCC
Q 048178 319 SSQLLLYEPGT 329 (376)
Q Consensus 319 ~~~~~~yd~~t 329 (376)
++.+..||++.
T Consensus 415 dg~i~iw~~~g 425 (425)
T 1r5m_A 415 LQEGSVVAIPG 425 (425)
T ss_dssp SSCCEEEECCC
T ss_pred CceEEEEeecC
Confidence 77799998763
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=81.29 E-value=26 Score=30.33 Aligned_cols=98 Identities=11% Similarity=0.084 Sum_probs=56.1
Q ss_pred cEEEEEECCCceEeeecCCCCCCCCCceeEEEe-cCe-EEEEEecCCCCEEEEEEeCC---CceeeEEEECCCCceeeeE
Q 048178 231 YVILSFHMAEEKFQEIQGPCTLESSLDVTLGIY-DQS-LSLLLLDTVDHCFKIWVMQK---KNWIKQSSVGPFIGIFQPL 305 (376)
Q Consensus 231 ~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~-~g~-L~l~~~~~~~~~l~vW~l~~---~~W~~~~~i~~~~~~~~~~ 305 (376)
..+..||..+.+...+.-. .. ....++.. +|+ |++.... ...+.++.++. ........+ + . ..-+
T Consensus 165 g~v~~~d~~~~~~~~~~~~--~~--~p~gia~~~dg~~lyv~d~~--~~~I~~~~~~~~~~~~~~~~~~~-~--g-P~gi 234 (322)
T 2fp8_A 165 GRLIKYDPSTKETTLLLKE--LH--VPGGAEVSADSSFVLVAEFL--SHQIVKYWLEGPKKGTAEVLVKI-P--N-PGNI 234 (322)
T ss_dssp EEEEEEETTTTEEEEEEEE--ES--CCCEEEECTTSSEEEEEEGG--GTEEEEEESSSTTTTCEEEEEEC-S--S-EEEE
T ss_pred ceEEEEeCCCCEEEEeccC--Cc--cCcceEECCCCCEEEEEeCC--CCeEEEEECCCCcCCccceEEeC-C--C-CCCe
Confidence 4699999987766544100 00 01234443 455 6666553 46666666654 334333332 2 1 2224
Q ss_pred EEeeCCcEEEEEcC-----------CeEEEEeCCCCcEEEEEEe
Q 048178 306 LFWKKGAFFVESNS-----------SQLLLYEPGTGELRDFELE 338 (376)
Q Consensus 306 ~~~~~g~i~~~~~~-----------~~~~~yd~~t~~~~~v~~~ 338 (376)
++..+|.|++.... +.+..||++.+.++.+...
T Consensus 235 ~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~ 278 (322)
T 2fp8_A 235 KRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLP 278 (322)
T ss_dssp EECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECC
T ss_pred EECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECC
Confidence 44557888887543 5699999988877777654
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=81.28 E-value=26 Score=30.39 Aligned_cols=151 Identities=13% Similarity=0.179 Sum_probs=79.2
Q ss_pred cceEEEEEcC-CCceEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEeee----cCCCCCCC
Q 048178 182 FSLVTVYNLS-TNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQEI----QGPCTLES 254 (376)
Q Consensus 182 ~~~~~vyss~-t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i----~lP~~~~~ 254 (376)
...+.+|+.. ++....+.............+.+ +|...+++....+ ...+..+|..+.++..+ ..|.....
T Consensus 161 ~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~--~v~v~~~~~~~g~~~~~~~~~~~~~~~~~ 238 (347)
T 3hfq_A 161 SDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSS--QIASLKYDTQTGAFTQLGIVKTIPADYTA 238 (347)
T ss_dssp TTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTT--EEEEEEEETTTTEEEEEEEEESSCTTCCS
T ss_pred CCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCC--EEEEEEecCCCCceEEeeeeeecCCCCCC
Confidence 4578889988 56655433211100001112222 6763334333211 22344444435665433 23432211
Q ss_pred CCc-eeEEEe-cCe-EEEEEecCCCCEEEEEEeCC-CceeeEEEECCC-CceeeeEEEeeCCc-EEEEEc-CCeEEEE--
Q 048178 255 SLD-VTLGIY-DQS-LSLLLLDTVDHCFKIWVMQK-KNWIKQSSVGPF-IGIFQPLLFWKKGA-FFVESN-SSQLLLY-- 325 (376)
Q Consensus 255 ~~~-~~l~~~-~g~-L~l~~~~~~~~~l~vW~l~~-~~W~~~~~i~~~-~~~~~~~~~~~~g~-i~~~~~-~~~~~~y-- 325 (376)
... ..++.. +|+ |++.... ...+.+|.++. +.+..+..+ +. .....-+++.++|+ +++... .+.+.+|
T Consensus 239 ~~~~~~i~~spdG~~l~v~~~~--~~~v~v~~~~~~g~~~~~~~~-~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 239 HNGAAAIRLSHDGHFLYVSNRG--YNTLAVFAVTADGHLTLIQQI-STEGDFPRDFDLDPTEAFVVVVNQNTDNATLYAR 315 (347)
T ss_dssp CCEEEEEEECTTSCEEEEEEET--TTEEEEEEECGGGCEEEEEEE-ECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCcceeEEECCCCCEEEEEeCC--CCEEEEEEECCCCcEEEeEEE-ecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence 111 223333 666 6555544 68899999985 567777666 33 22234467777887 555544 4667777
Q ss_pred eCCCCcEEEEEE
Q 048178 326 EPGTGELRDFEL 337 (376)
Q Consensus 326 d~~t~~~~~v~~ 337 (376)
|.++++++.+.-
T Consensus 316 d~~tg~l~~~~~ 327 (347)
T 3hfq_A 316 DLTSGKLSLLQK 327 (347)
T ss_dssp CTTTCCEEEEEE
T ss_pred eCCCCeEEeccc
Confidence 888999988754
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=81.08 E-value=3.7 Score=36.51 Aligned_cols=139 Identities=4% Similarity=0.057 Sum_probs=69.5
Q ss_pred cceEEEEEcCCCceEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCce-Eeee-cCCCCCCCCCc
Q 048178 182 FSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEK-FQEI-QGPCTLESSLD 257 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~-~~~i-~lP~~~~~~~~ 257 (376)
...+.+|+..++.|+.+........ ...++.+ +|.+...+.. ...|..+|+.+.. +... .+..... .-
T Consensus 32 d~~i~iw~~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~s~-----d~~v~vwd~~~~~~~~~~~~~~~~~~--~v 103 (377)
T 3dwl_C 32 TNQVELYEQDGNGWKHARTFSDHDK-IVTCVDWAPKSNRIVTCSQ-----DRNAYVYEKRPDGTWKQTLVLLRLNR--AA 103 (377)
T ss_dssp SSCBCEEEEETTEEEECCCBCCCSS-CEEEEEECTTTCCEEEEET-----TSSEEEC------CCCCEEECCCCSS--CE
T ss_pred CCEEEEEEccCCceEEEEEEecCCc-eEEEEEEeCCCCEEEEEeC-----CCeEEEEEcCCCCceeeeeEecccCC--ce
Confidence 4578888988888877664432111 1112222 3443333322 2368888888766 3322 2211111 11
Q ss_pred eeEEEe-cCeEEEEEecCCCCEEEEEEeCC-CceeeEEEECC-CCceeeeEEEeeCCcEEEE-EcCCeEEEEeCCCC
Q 048178 258 VTLGIY-DQSLSLLLLDTVDHCFKIWVMQK-KNWIKQSSVGP-FIGIFQPLLFWKKGAFFVE-SNSSQLLLYEPGTG 330 (376)
Q Consensus 258 ~~l~~~-~g~L~l~~~~~~~~~l~vW~l~~-~~W~~~~~i~~-~~~~~~~~~~~~~g~i~~~-~~~~~~~~yd~~t~ 330 (376)
..+... +|++.+.... +..+.+|.++. ..|.....+.. ......-+++.+++.+++. ..++.+..||++++
T Consensus 104 ~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 178 (377)
T 3dwl_C 104 TFVRWSPNEDKFAVGSG--ARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVR 178 (377)
T ss_dssp EEEECCTTSSCCEEEES--SSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCS
T ss_pred EEEEECCCCCEEEEEec--CCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEec
Confidence 222222 5555555544 67899999988 55777766632 2323444566667776654 56778999998643
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=81.00 E-value=26 Score=30.19 Aligned_cols=205 Identities=8% Similarity=0.023 Sum_probs=104.1
Q ss_pred eecceEEEee-cCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceE
Q 048178 107 LYCGIVFIEG-LNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLV 185 (376)
Q Consensus 107 s~~Gll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 185 (376)
+.+|-+.+.+ ....++++|+.+++...+..... . . ..++.+|+..+ ++.... ... .....+
T Consensus 53 ~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~---~-~-----~~~i~~~~dg~---l~v~~~--~~~----~~~~~i 114 (333)
T 2dg1_A 53 DRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHK---A-N-----PAAIKIHKDGR---LFVCYL--GDF----KSTGGI 114 (333)
T ss_dssp CTTSCEEEEETTTCEEEEECTTTCCEEEEEECSS---S-S-----EEEEEECTTSC---EEEEEC--TTS----SSCCEE
T ss_pred CCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCC---C-C-----cceEEECCCCc---EEEEeC--CCC----CCCceE
Confidence 3466665543 45678999999988766532111 1 1 24666775532 222211 000 012467
Q ss_pred EEEEcCCCceEec-cccCccccCCCCeEEE--CceEEEEeeecC-CCCccEEEEEECCCceEeeecCCCCCCCCCceeEE
Q 048178 186 TVYNLSTNSWRNL-KSIDYTMRLSSERTYF--DGAFYWLLKLEN-DNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLG 261 (376)
Q Consensus 186 ~vyss~t~~W~~~-~~~~~~~~~~~~~v~~--~G~lywl~~~~~-~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~ 261 (376)
.+|+..++.-+.+ ..... ......+.+ +|.+|....... ......|..+|.++.+...+.- ... ....++
T Consensus 115 ~~~d~~~~~~~~~~~~~~~--~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~--~~~~i~ 188 (333)
T 2dg1_A 115 FAATENGDNLQDIIEDLST--AYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ--NIS--VANGIA 188 (333)
T ss_dssp EEECTTSCSCEEEECSSSS--CCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE--EES--SEEEEE
T ss_pred EEEeCCCCEEEEEEccCcc--CCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec--CCC--cccceE
Confidence 7888877765422 11110 011122333 577665443210 0012478899988766654421 000 112333
Q ss_pred Ee-cCe-EEEEEecCCCCEEEEEEeCC--CceeeE-----EEECCCCceeeeEEEeeCCcEEEEEc-CCeEEEEeCCCCc
Q 048178 262 IY-DQS-LSLLLLDTVDHCFKIWVMQK--KNWIKQ-----SSVGPFIGIFQPLLFWKKGAFFVESN-SSQLLLYEPGTGE 331 (376)
Q Consensus 262 ~~-~g~-L~l~~~~~~~~~l~vW~l~~--~~W~~~-----~~i~~~~~~~~~~~~~~~g~i~~~~~-~~~~~~yd~~t~~ 331 (376)
.. +|+ |++.... ...+.+|.++. ...... ... +-.....-+++.++|.+++... .+.+..||++++.
T Consensus 189 ~~~dg~~l~v~~~~--~~~i~~~d~~~~g~~~~~~~~~~~~~~-~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~~ 265 (333)
T 2dg1_A 189 LSTDEKVLWVTETT--ANRLHRIALEDDGVTIQPFGATIPYYF-TGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYP 265 (333)
T ss_dssp ECTTSSEEEEEEGG--GTEEEEEEECTTSSSEEEEEEEEEEEC-CSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSCE
T ss_pred ECCCCCEEEEEeCC--CCeEEEEEecCCCcCcccccceEEEec-CCCCCCCceEECCCCCEEEEEcCCCEEEEECCCCCE
Confidence 33 555 6665543 56788888853 222211 111 1111223355566788888764 5779999998777
Q ss_pred EEEEEEe
Q 048178 332 LRDFELE 338 (376)
Q Consensus 332 ~~~v~~~ 338 (376)
++.+...
T Consensus 266 ~~~~~~~ 272 (333)
T 2dg1_A 266 IGQILIP 272 (333)
T ss_dssp EEEEECT
T ss_pred EEEEEcC
Confidence 7777543
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=80.81 E-value=32 Score=31.03 Aligned_cols=195 Identities=9% Similarity=0.074 Sum_probs=99.8
Q ss_pred eecceEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEE
Q 048178 107 LYCGIVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVT 186 (376)
Q Consensus 107 s~~Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 186 (376)
|.+++|.+.. ++.++|||..|++...+-..... ... ...+.+.+. +.|-+++- ....+.
T Consensus 114 S~~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~--~~~-----V~sv~fspd-g~~lasgs------------~Dg~v~ 172 (420)
T 4gga_A 114 SSGNVLAVAL-DNSVYLWSASSGDILQLLQMEQP--GEY-----ISSVAWIKE-GNYLAVGT------------SSAEVQ 172 (420)
T ss_dssp CTTSEEEEEE-TTEEEEEETTTCCEEEEEECCST--TCC-----EEEEEECTT-SSEEEEEE------------TTSCEE
T ss_pred CCCCEEEEEe-CCEEEEEECCCCCEEEEEEecCC--CCc-----EEEEEECCC-CCEEEEEE------------CCCeEE
Confidence 5677776554 57789999999987664332211 111 235666553 34433321 245788
Q ss_pred EEEcCCCceE-eccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEE-ec
Q 048178 187 VYNLSTNSWR-NLKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGI-YD 264 (376)
Q Consensus 187 vyss~t~~W~-~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~-~~ 264 (376)
+++.+++.-. ..... .....++..+|.+-..+.. ...+..+|..........+...... ...+.. -+
T Consensus 173 iWd~~~~~~~~~~~~h----~~~v~~~s~~~~~l~sgs~-----d~~i~~~d~~~~~~~~~~~~~h~~~--~~~~~~~~~ 241 (420)
T 4gga_A 173 LWDVQQQKRLRNMTSH----SARVGSLSWNSYILSSGSR-----SGHIHHHDVRVAEHHVATLSGHSQE--VCGLRWAPD 241 (420)
T ss_dssp EEETTTTEEEEEECCC----SSCEEEEEEETTEEEEEET-----TSEEEEEETTSSSCEEEEEECCSSC--EEEEEECTT
T ss_pred EEEcCCCcEEEEEeCC----CCceEEEeeCCCEEEEEeC-----CCceeEeeecccceeeEEecccccc--eeeeeecCC
Confidence 9998876421 11111 1112345556655443332 3467777776544332222111111 122222 24
Q ss_pred CeEEEEEecCCCCEEEEEEeCC--CceeeEEEECCCCceeeeEEEeeC-CcEEEE-E--cCCeEEEEeCCCCcEEEE
Q 048178 265 QSLSLLLLDTVDHCFKIWVMQK--KNWIKQSSVGPFIGIFQPLLFWKK-GAFFVE-S--NSSQLLLYEPGTGELRDF 335 (376)
Q Consensus 265 g~L~l~~~~~~~~~l~vW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~-g~i~~~-~--~~~~~~~yd~~t~~~~~v 335 (376)
|...+.... +..+.||.... ..+..+............+++... +.++.. . .++.+..||+++++....
T Consensus 242 g~~l~s~~~--D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~ 316 (420)
T 4gga_A 242 GRHLASGGN--DNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA 316 (420)
T ss_dssp SSEEEEEET--TSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE
T ss_pred CCeeeeeec--cccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee
Confidence 555544444 68899998876 233333333122222333444443 345543 2 357799999999875543
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=80.56 E-value=31 Score=30.76 Aligned_cols=187 Identities=10% Similarity=0.007 Sum_probs=91.4
Q ss_pred cCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceE
Q 048178 117 LNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWR 196 (376)
Q Consensus 117 ~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~ 196 (376)
..+.+.|||........-+......+.. ....+.+.+..+.+-+.+- ....+.+|+..++...
T Consensus 55 ~~g~i~v~~~~~~~~~~~~~~~~~~h~~-----~V~~~~~~p~~~~~l~s~s------------~dg~v~vw~~~~~~~~ 117 (402)
T 2aq5_A 55 GGGAFLVLPLGKTGRVDKNVPLVCGHTA-----PVLDIAWCPHNDNVIASGS------------EDCTVMVWEIPDGGLV 117 (402)
T ss_dssp SSCCEEEEETTCCEECCTTCCCBCCCSS-----CEEEEEECTTCTTEEEEEE------------TTSEEEEEECCTTCCS
T ss_pred CCCEEEEEECccCCCCCCCCceEecCCC-----CEEEEEeCCCCCCEEEEEe------------CCCeEEEEEccCCCCc
Confidence 3567899997543221101111111111 1346777764444333321 2457899998887442
Q ss_pred ecc-ccCcccc---CCCCeEEE--Cc-eEEEEeeecCCCCccEEEEEECCCceEeee-cCCCCCCCCCceeEEEe-cCeE
Q 048178 197 NLK-SIDYTMR---LSSERTYF--DG-AFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCTLESSLDVTLGIY-DQSL 267 (376)
Q Consensus 197 ~~~-~~~~~~~---~~~~~v~~--~G-~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~~-~g~L 267 (376)
... .....+. .....+.+ +| .+...+.. ...|..+|+++.+.... ...... . .-..+... +|.+
T Consensus 118 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~-~-~v~~~~~~~~~~~ 190 (402)
T 2aq5_A 118 LPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC-----DNVILVWDVGTGAAVLTLGPDVHP-D-TIYSVDWSRDGAL 190 (402)
T ss_dssp SCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEET-----TSCEEEEETTTTEEEEEECTTTCC-S-CEEEEEECTTSSC
T ss_pred cccCCceEEecCCCCeEEEEEECcCCCCEEEEEcC-----CCEEEEEECCCCCccEEEecCCCC-C-ceEEEEECCCCCE
Confidence 110 0100111 11112333 23 23333332 23688999988765332 211111 1 11233333 5665
Q ss_pred EEEEecCCCCEEEEEEeCCCceeeEEEE-CCCCce-eeeEEEeeCCcEEEEE----cCCeEEEEeCCCCc
Q 048178 268 SLLLLDTVDHCFKIWVMQKKNWIKQSSV-GPFIGI-FQPLLFWKKGAFFVES----NSSQLLLYEPGTGE 331 (376)
Q Consensus 268 ~l~~~~~~~~~l~vW~l~~~~W~~~~~i-~~~~~~-~~~~~~~~~g~i~~~~----~~~~~~~yd~~t~~ 331 (376)
.+.... +..+.||.+...+ .+..+ ...... ..-+.+..+|.+++.. .++.+..||+++.+
T Consensus 191 l~~~~~--d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 191 ICTSCR--DKRVRVIEPRKGT--VVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLE 256 (402)
T ss_dssp EEEEET--TSEEEEEETTTTE--EEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCS
T ss_pred EEEEec--CCcEEEEeCCCCc--eeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcccc
Confidence 555554 7899999998743 23333 122211 2334556678877765 56789999998854
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=80.39 E-value=32 Score=30.71 Aligned_cols=192 Identities=8% Similarity=0.025 Sum_probs=98.5
Q ss_pred ceEEEeecCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEE
Q 048178 110 GIVFIEGLNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYN 189 (376)
Q Consensus 110 Gll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vys 189 (376)
.+|+.......+.|||..+++....-.... .. ...+.+.+.. .+ ++.. .....+.+|+
T Consensus 110 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~----~~-----v~~~~~~~~~-~~-l~s~-----------s~d~~i~iwd 167 (420)
T 3vl1_A 110 RRFILGTTEGDIKVLDSNFNLQREIDQAHV----SE-----ITKLKFFPSG-EA-LISS-----------SQDMQLKIWS 167 (420)
T ss_dssp CEEEEEETTSCEEEECTTSCEEEEETTSSS----SC-----EEEEEECTTS-SE-EEEE-----------ETTSEEEEEE
T ss_pred CEEEEEECCCCEEEEeCCCcceeeeccccc----Cc-----cEEEEECCCC-CE-EEEE-----------eCCCeEEEEe
Confidence 355555567788999999888766432111 11 2456666543 32 2222 1245788998
Q ss_pred cCCCce-EeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEee-ecCCCCCCCCCceeEEE---
Q 048178 190 LSTNSW-RNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQE-IQGPCTLESSLDVTLGI--- 262 (376)
Q Consensus 190 s~t~~W-~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~-i~lP~~~~~~~~~~l~~--- 262 (376)
.+++.= +.+.... ....++.+ +|.....+.. ...|..+|+.+.+-.. +..+..... ....+..
T Consensus 168 ~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~s~~~-----d~~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~ 237 (420)
T 3vl1_A 168 VKDGSNPRTLIGHR----ATVTDIAIIDRGRNVLSASL-----DGTIRLWECGTGTTIHTFNRKENPHD-GVNSIALFVG 237 (420)
T ss_dssp TTTCCCCEEEECCS----SCEEEEEEETTTTEEEEEET-----TSCEEEEETTTTEEEEEECBTTBTTC-CEEEEEEEEC
T ss_pred CCCCcCceEEcCCC----CcEEEEEEcCCCCEEEEEcC-----CCcEEEeECCCCceeEEeecCCCCCC-CccEEEEecC
Confidence 877531 1111110 01112222 4544433332 2368889988765433 333221111 0011111
Q ss_pred -------------------ecCeEEEEEecCCCCEEEEEEeCCCceeeEEEEC-CCCceeeeEEEeeCCc-EEEE-EcCC
Q 048178 263 -------------------YDQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVG-PFIGIFQPLLFWKKGA-FFVE-SNSS 320 (376)
Q Consensus 263 -------------------~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~-~~~~~~~~~~~~~~g~-i~~~-~~~~ 320 (376)
-+|++.++... +..+.+|.+...+ ....+. .......-+++.++|. +++. ..++
T Consensus 238 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg 313 (420)
T 3vl1_A 238 TDRQLHEISTSKKNNLEFGTYGKYVIAGHV--SGVITVHNVFSKE--QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENG 313 (420)
T ss_dssp CCSSCGGGCCCCCCTTCSSCTTEEEEEEET--TSCEEEEETTTCC--EEEEECCTTSSCEEEEEECSSCTTEEEEEETTS
T ss_pred CcceeeecccCcccceEEcCCCCEEEEEcC--CCeEEEEECCCCc--eeEEcccccCCCceeEEEeCCCCCEEEEEeCCC
Confidence 24555555544 6789999987732 333331 1222244456666776 5554 5678
Q ss_pred eEEEEeCCCCc--EEEEEE
Q 048178 321 QLLLYEPGTGE--LRDFEL 337 (376)
Q Consensus 321 ~~~~yd~~t~~--~~~v~~ 337 (376)
.+..||+++++ +..+..
T Consensus 314 ~i~vwd~~~~~~~~~~~~~ 332 (420)
T 3vl1_A 314 MLAQWDLRSPECPVGEFLI 332 (420)
T ss_dssp EEEEEETTCTTSCSEEEEE
T ss_pred eEEEEEcCCCcCchhhhhc
Confidence 89999999864 455544
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=80.35 E-value=24 Score=31.70 Aligned_cols=55 Identities=11% Similarity=0.120 Sum_probs=40.3
Q ss_pred EEEEeCCCceeeEEEECCCCceeeeEEEeeCCc-EEEEE--cCCeEEEEeCCCCcEEEE
Q 048178 280 KIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGA-FFVES--NSSQLLLYEPGTGELRDF 335 (376)
Q Consensus 280 ~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~~--~~~~~~~yd~~t~~~~~v 335 (376)
+||+.+-.....+.+| +......-+++..+|+ +++.. ..+.+.+||.+|++..+.
T Consensus 299 ~V~VID~~t~~vv~~i-~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 299 EVTSVTGLVGQTSSQI-SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred eEEEEECCCCEEEEEE-ECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 6888887778888888 6654444567777888 55553 367899999999876643
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=80.21 E-value=27 Score=29.91 Aligned_cols=189 Identities=14% Similarity=0.076 Sum_probs=98.2
Q ss_pred cceEEEee-cCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEE
Q 048178 109 CGIVFIEG-LNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTV 187 (376)
Q Consensus 109 ~Gll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~v 187 (376)
.+.+++.. ....+.++|+.|++....-.... . ...+.+++..+ + ++... .....+.+
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~-----~-----~~~~~~s~dg~-~-l~~~~----------~~~~~i~~ 66 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDTLEILNQITLGY-----D-----FVDTAITSDCS-N-VVVTS----------DFCQTLVQ 66 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTTCCEEEEEECCC-----C-----EEEEEECSSSC-E-EEEEE----------STTCEEEE
T ss_pred CCEEEEEecCCCeEEEEeCcccceeeeEEccC-----C-----cceEEEcCCCC-E-EEEEe----------CCCCeEEE
Confidence 44444443 35678999999998755322211 1 12566665443 2 22221 12348888
Q ss_pred EEcCCCce--EeccccCccccCCCCeEE--ECceEEEEeeecCCCCccEEEEEECCCceEee-ecCCCCCCCCCceeEEE
Q 048178 188 YNLSTNSW--RNLKSIDYTMRLSSERTY--FDGAFYWLLKLENDNDNYVILSFHMAEEKFQE-IQGPCTLESSLDVTLGI 262 (376)
Q Consensus 188 yss~t~~W--~~~~~~~~~~~~~~~~v~--~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~-i~lP~~~~~~~~~~l~~ 262 (376)
++..++.- +.+... .....++. -+|..-+...... ....|..+|+++.+... ++.+... ..++.
T Consensus 67 ~d~~~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~~-----~~~~~ 135 (331)
T 3u4y_A 67 IETQLEPPKVVAIQEG----QSSMADVDITPDDQFAVTVTGLN--HPFNMQSYSFLKNKFISTIPIPYDA-----VGIAI 135 (331)
T ss_dssp EECSSSSCEEEEEEEC----SSCCCCEEECTTSSEEEECCCSS--SSCEEEEEETTTTEEEEEEECCTTE-----EEEEE
T ss_pred EECCCCceeEEecccC----CCCccceEECCCCCEEEEecCCC--CcccEEEEECCCCCeEEEEECCCCc-----cceEE
Confidence 99888754 222111 01112132 3455333332210 02279999998876533 3332211 23333
Q ss_pred e-cCe-EEEEEecCCCCEEEEEEeCC-Cceee--EEEECCCCceeeeEEEeeCCc-EEEEE-cCCeEEEEeCCCCcE
Q 048178 263 Y-DQS-LSLLLLDTVDHCFKIWVMQK-KNWIK--QSSVGPFIGIFQPLLFWKKGA-FFVES-NSSQLLLYEPGTGEL 332 (376)
Q Consensus 263 ~-~g~-L~l~~~~~~~~~l~vW~l~~-~~W~~--~~~i~~~~~~~~~~~~~~~g~-i~~~~-~~~~~~~yd~~t~~~ 332 (376)
. +|+ |++.... ....+.+|.++. +.-.. ...+ +......-+++.++|+ +++.. .++.+..||+++++.
T Consensus 136 spdg~~l~~~~~~-~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 136 SPNGNGLILIDRS-SANTVRRFKIDADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp CTTSSCEEEEEET-TTTEEEEEEECTTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred CCCCCEEEEEecC-CCceEEEEEECCCCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 3 565 6666553 233499999987 32221 1223 2222234456677887 66655 467899999998874
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 376 | ||||
| d1fs1a1 | 41 | a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ | 9e-10 | |
| d2ovrb1 | 102 | a.158.1.1 (B:2263-2364) F-box/WD repeat-containing | 5e-06 | |
| d1p22a1 | 118 | a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b | 6e-06 | |
| d1nexb1 | 100 | a.158.1.1 (B:270-369) Cdc4 F-box and linker domain | 9e-05 |
| >d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.2 bits (123), Expect = 9e-10
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 7 DDSPEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNF 45
D P+++++ I S L + L+++ VCK WY L + +
Sbjct: 2 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40
|
| >d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.8 bits (100), Expect = 5e-06
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 10 PEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNF 45
P+++ + +LS L K L++ C+ W L ++
Sbjct: 23 PKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLL 58
|
| >d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.8 bits (100), Expect = 6e-06
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 10 PEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNP 43
+ I ILS L KSL VCK WY + +
Sbjct: 19 LDHIAENILSYLDAKSLCAAELVCKEWYRVTSDG 52
|
| >d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Cdc4 F-box and linker domains species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.2 bits (91), Expect = 9e-05
Identities = 9/41 (21%), Positives = 20/41 (48%)
Query: 10 PEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFISMHL 50
P +I ++I + L + +I V ++W +I+ + L
Sbjct: 10 PFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKL 50
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 376 | |||
| d1fs1a1 | 41 | Skp2 {Human (Homo sapiens) [TaxId: 9606]} | 99.22 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 98.86 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 98.82 | |
| d2ovrb1 | 102 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 98.61 | |
| d1nexb1 | 100 | Cdc4 F-box and linker domains {Baker's yeast (Sacc | 98.47 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 98.37 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 98.28 | |
| d1p22a1 | 118 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 98.21 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 91.96 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 87.81 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 86.46 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 85.66 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 84.07 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 83.32 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 82.32 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 81.44 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 80.39 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 80.18 |
| >d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=1.7e-12 Score=77.50 Aligned_cols=39 Identities=31% Similarity=0.755 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHHhcCCccccceeeecchhhhhhcCChHH
Q 048178 7 DDSPEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNF 45 (376)
Q Consensus 7 ~~LP~Dll~eIl~rLp~~~l~r~r~VcK~W~~li~~p~F 45 (376)
+.||+|++.+||++||++++.|+++|||+|+.+++++.+
T Consensus 2 ~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l 40 (41)
T d1fs1a1 2 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40 (41)
T ss_dssp CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred CcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence 579999999999999999999999999999999998864
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=2.3e-07 Score=80.10 Aligned_cols=220 Identities=10% Similarity=0.052 Sum_probs=134.0
Q ss_pred CCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceEe
Q 048178 118 NNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRN 197 (376)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~ 197 (376)
...+.++||.|++|..+|++|..+... ..... ++ +++.++....... .......+++|+..+++|+.
T Consensus 18 ~~~~~~yd~~t~~W~~~~~~p~~R~~~-------~~~~~----~~-~iyv~GG~~~~~~-~~~~~~~~~~yd~~~~~w~~ 84 (288)
T d1zgka1 18 LSYLEAYNPSNGTWLRLADLQVPRSGL-------AGCVV----GG-LLYAVGGRNNSPD-GNTDSSALDCYNPMTNQWSP 84 (288)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCCBSC-------EEEEE----TT-EEEEECCEEEETT-EEEECCCEEEEETTTTEEEE
T ss_pred CceEEEEECCCCeEEECCCCCCcccee-------EEEEE----CC-EEEEEeCcccCCC-Cccccchhhhcccccccccc
Confidence 345789999999999999877653221 11111 12 3444432111110 00224588999999999999
Q ss_pred ccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeeec-CCCCCCCCCceeEEEecCeEEEEEec---
Q 048178 198 LKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQ-GPCTLESSLDVTLGIYDQSLSLLLLD--- 273 (376)
Q Consensus 198 ~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~-lP~~~~~~~~~~l~~~~g~L~l~~~~--- 273 (376)
++.+|.... ...++.++|++|.+..............+|..+++|...+ .|.... ....++.++++++++..
T Consensus 85 ~~~~p~~r~-~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~---~~~~~~~~~~~~~~GG~~~~ 160 (288)
T d1zgka1 85 CAPMSVPRN-RIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRI---GVGVAVLNRLLYAVGGFDGT 160 (288)
T ss_dssp CCCCSSCCB-TCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCB---SCEEEEETTEEEEECCBCSS
T ss_pred cccccceec-ceeccccceeeEEecceecccccceeeeeccccCccccccccccccc---cceeeeeeecceEecCcccc
Confidence 987654332 3347788999998876543322445788999999998774 333332 25667788888888762
Q ss_pred CCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEc------CCeEEEEeCCCCcEEEEEEec-c--eEEE
Q 048178 274 TVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESN------SSQLLLYEPGTGELRDFELEC-C--WFSI 344 (376)
Q Consensus 274 ~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~------~~~~~~yd~~t~~~~~v~~~~-~--~~~~ 344 (376)
.....+.+|.....+|...... +... ....++..++.|++... ......||..+++|+.+.-.. . ...+
T Consensus 161 ~~~~~~~~~d~~~~~~~~~~~~-~~~~-~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~ 238 (288)
T d1zgka1 161 NRLNSAECYYPERNEWRMITAM-NTIR-SGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGI 238 (288)
T ss_dssp CBCCCEEEEETTTTEEEECCCC-SSCC-BSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEE
T ss_pred cccceEEEeecccccccccccc-cccc-ccccccceeeeEEEecCccccccccceeeeeecceeeecccCccCcccceEE
Confidence 1234556665555778876554 3332 22233344677776632 235899999999999985322 1 3344
Q ss_pred EEeecCccccCC
Q 048178 345 YIYTESLITLKG 356 (376)
Q Consensus 345 ~~y~~sLv~~~~ 356 (376)
..+...|.-+++
T Consensus 239 ~~~~~~l~v~GG 250 (288)
T d1zgka1 239 TVHQGRIYVLGG 250 (288)
T ss_dssp EEETTEEEEECC
T ss_pred EEECCEEEEEec
Confidence 444544444443
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=7.1e-07 Score=76.93 Aligned_cols=198 Identities=9% Similarity=0.075 Sum_probs=126.8
Q ss_pred CCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEEEEcCCCceEe
Q 048178 118 NNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTVYNLSTNSWRN 197 (376)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~ 197 (376)
...+.++||.|.+|..+|+++..+... ....++ + |++.+... ... ......++|+..++.|..
T Consensus 69 ~~~~~~yd~~~~~w~~~~~~p~~r~~~-------~~~~~~---~--~i~~~gg~-~~~----~~~~~~~~~~~~~~~~~~ 131 (288)
T d1zgka1 69 SSALDCYNPMTNQWSPCAPMSVPRNRI-------GVGVID---G--HIYAVGGS-HGC----IHHNSVERYEPERDEWHL 131 (288)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCCBTC-------EEEEET---T--EEEEECCE-ETT----EECCCEEEEETTTTEEEE
T ss_pred cchhhhcccccccccccccccceecce-------eccccc---e--eeEEecce-ecc----cccceeeeeccccCcccc
Confidence 346899999999999999877553221 111221 1 34433221 111 224578899999999998
Q ss_pred ccccCccccCCCCeEEECceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEEecCeEEEEEecC-CC
Q 048178 198 LKSIDYTMRLSSERTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIYDQSLSLLLLDT-VD 276 (376)
Q Consensus 198 ~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~~g~L~l~~~~~-~~ 276 (376)
.+..+... .....+..++.+|.+...........+..||+.+++|...+.++... ........+++++++.... ..
T Consensus 132 ~~~~~~~r-~~~~~~~~~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~i~GG~~~~~ 208 (288)
T d1zgka1 132 VAPMLTRR-IGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIR--SGAGVCVLHNCIYAAGGYDGQD 208 (288)
T ss_dssp CCCCSSCC-BSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCC--BSCEEEEETTEEEEECCBCSSS
T ss_pred cccccccc-ccceeeeeeecceEecCcccccccceEEEeecccccccccccccccc--ccccccceeeeEEEecCccccc
Confidence 87654332 23346778888887765543333557899999999999875443322 2356778899999887732 22
Q ss_pred --CEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEEEEc------CCeEEEEeCCCCcEEEEEE
Q 048178 277 --HCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFVESN------SSQLLLYEPGTGELRDFEL 337 (376)
Q Consensus 277 --~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~------~~~~~~yd~~t~~~~~v~~ 337 (376)
....++.....+|..+..+ |......-++ .-+|+|++... ...+..||+++++|+.+.-
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~-p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 275 (288)
T d1zgka1 209 QLNSVERYDVETETWTFVAPM-KHRRSALGIT-VHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTR 275 (288)
T ss_dssp BCCCEEEEETTTTEEEECCCC-SSCCBSCEEE-EETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEE
T ss_pred cccceeeeeecceeeecccCc-cCcccceEEE-EECCEEEEEecCCCCeecceEEEEECCCCEEEECCC
Confidence 3344444455888887655 5543333333 34788887632 2358999999999999964
|
| >d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=7.3e-09 Score=75.44 Aligned_cols=47 Identities=21% Similarity=0.347 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHhcCCccccceeeecchhhhhhcCChHHHHHHhhc
Q 048178 6 NDDSPEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFISMHLKN 52 (376)
Q Consensus 6 ~~~LP~Dll~eIl~rLp~~~l~r~r~VcK~W~~li~~p~F~~~~~~~ 52 (376)
.+.||+||+.+||++||+++|+++++|||+|+.++.++.+-+.+...
T Consensus 19 i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~~r 65 (102)
T d2ovrb1 19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKE 65 (102)
T ss_dssp TTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTT
T ss_pred hhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 57799999999999999999999999999999999999988777654
|
| >d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Cdc4 F-box and linker domains species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.47 E-value=2.4e-08 Score=72.26 Aligned_cols=41 Identities=20% Similarity=0.431 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHhcCCccccceeeecchhhhhhcC-ChHHHH
Q 048178 7 DDSPEDIMIEILSRLPVKSLIRLRCVCKSWYALIK-NPNFIS 47 (376)
Q Consensus 7 ~~LP~Dll~eIl~rLp~~~l~r~r~VcK~W~~li~-~p~F~~ 47 (376)
+.||+||+.+||+.|++++|++++.|||+|+.+++ ++.+-+
T Consensus 7 ~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr 48 (100)
T d1nexb1 7 TSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWK 48 (100)
T ss_dssp HHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHH
T ss_pred hhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 56999999999999999999999999999999984 566443
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=98.37 E-value=1.5e-05 Score=71.32 Aligned_cols=210 Identities=10% Similarity=0.107 Sum_probs=118.0
Q ss_pred eecceEEEeec--CCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcce
Q 048178 107 LYCGIVFIEGL--NNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSL 184 (376)
Q Consensus 107 s~~Gll~~~~~--~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 184 (376)
..+|.+++... .....++||.|++|..+|.++..+..+ ....-.| + +|+.+.... .. ......
T Consensus 84 ~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~------~~~~~~d---G--~v~v~GG~~-~~---~~~~~~ 148 (387)
T d1k3ia3 84 DGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQ------SSATMSD---G--RVFTIGGSW-SG---GVFEKN 148 (387)
T ss_dssp CTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSC------EEEECTT---S--CEEEECCCC-CS---SSCCCC
T ss_pred ecCCcEEEeecCCCcceeEecCccCccccccccccccccc------ceeeecC---C--ceeeecccc-cc---ccccce
Confidence 45777766643 456799999999999999887654221 1122112 2 333332111 11 123568
Q ss_pred EEEEEcCCCceEeccccCcccc--C--------CCCe---EEECceEEEEeeecCCCCccEEEEEECCCceEeee-cCCC
Q 048178 185 VTVYNLSTNSWRNLKSIDYTMR--L--------SSER---TYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPC 250 (376)
Q Consensus 185 ~~vyss~t~~W~~~~~~~~~~~--~--------~~~~---v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~ 250 (376)
+++|+..+++|..++....... . .... ...+|.+|..... ...+..+|..+..|... ..|.
T Consensus 149 v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~ 223 (387)
T d1k3ia3 149 GEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPS-----TAMNWYYTSGSGDVKSAGKRQS 223 (387)
T ss_dssp EEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSS-----SEEEEEECSTTCEEEEEEECEE
T ss_pred eeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCc-----CCcEEecCcccCcEeecccccc
Confidence 9999999999998875432221 0 1111 1125666654432 34678899999999776 3332
Q ss_pred CCCCC----C--ceeEEEecCeEEEEEecC------CCCEEEEEEeCC-----CceeeEEEECCCCceeeeEEEeeCCcE
Q 048178 251 TLESS----L--DVTLGIYDQSLSLLLLDT------VDHCFKIWVMQK-----KNWIKQSSVGPFIGIFQPLLFWKKGAF 313 (376)
Q Consensus 251 ~~~~~----~--~~~l~~~~g~L~l~~~~~------~~~~l~vW~l~~-----~~W~~~~~i~~~~~~~~~~~~~~~g~i 313 (376)
..... . ...+...+|+++++.... ......+..+.. ..|.....+ |.........+..+|+|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~r~~~~~~~~~dg~i 302 (387)
T d1k3ia3 224 NRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGL-YFARTFHTSVVLPDGST 302 (387)
T ss_dssp TTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCC-SSCCBSCEEEECTTSCE
T ss_pred CcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeecccc-ccccccceeeeccCCeE
Confidence 22111 1 112233578888887721 122344444443 234444444 33333333444558888
Q ss_pred EEEEcC------------CeEEEEeCCCCcEEEEEE
Q 048178 314 FVESNS------------SQLLLYEPGTGELRDFEL 337 (376)
Q Consensus 314 ~~~~~~------------~~~~~yd~~t~~~~~v~~ 337 (376)
|+.... ..+..||+++++|+++.-
T Consensus 303 ~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~ 338 (387)
T d1k3ia3 303 FITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNP 338 (387)
T ss_dssp EEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCC
T ss_pred EEECCcccCccCCCCcEeceEEEEECCCCeEEECCC
Confidence 877431 136789999999999853
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=98.28 E-value=8.8e-06 Score=72.93 Aligned_cols=192 Identities=9% Similarity=0.088 Sum_probs=115.5
Q ss_pred ecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCC--CCCcceEEEEEcCCCceEeccccC
Q 048178 125 NIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDS--SCPFSLVTVYNLSTNSWRNLKSID 202 (376)
Q Consensus 125 NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~--~~~~~~~~vyss~t~~W~~~~~~~ 202 (376)
.|++++|...++.|.... +....+.++ ||+.+... ...... ......+++|+..+++|+....++
T Consensus 5 ~p~~g~W~~~~~~p~~~~----------~~a~~~~~g--kv~v~GG~-~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~ 71 (387)
T d1k3ia3 5 QPGLGRWGPTIDLPIVPA----------AAAIEPTSG--RVLMWSSY-RNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV 71 (387)
T ss_dssp CTTSCEEEEEEECSSCCS----------EEEEETTTT--EEEEEEEC-CCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE
T ss_pred CCCCCccCCcCCCCcccc----------EEEEEeeCC--EEEEEEee-cCcccCCCCCceeEEEEEECCCCcEeecCCCC
Confidence 488999988776654321 122222233 56666432 111110 122346889999999998775443
Q ss_pred ccccCCCC--eEEECceEEEEeeecCCCCccEEEEEECCCceEeee-cCCCCCCCCCceeEEEe-cCeEEEEEec----C
Q 048178 203 YTMRLSSE--RTYFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCTLESSLDVTLGIY-DQSLSLLLLD----T 274 (376)
Q Consensus 203 ~~~~~~~~--~v~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~~-~g~L~l~~~~----~ 274 (376)
......+. .+..+|.+|.....+ ...+..||+.+++|..+ .+|..... ...+.+ +|+++++... .
T Consensus 72 ~~~~~~~~~~~~~~~g~i~v~Gg~~----~~~~~~yd~~~~~w~~~~~~~~~r~~---~~~~~~~dG~v~v~GG~~~~~~ 144 (387)
T d1k3ia3 72 TKHDMFCPGISMDGNGQIVVTGGND----AKKTSLYDSSSDSWIPGPDMQVARGY---QSSATMSDGRVFTIGGSWSGGV 144 (387)
T ss_dssp CSCCCSSCEEEECTTSCEEEECSSS----TTCEEEEEGGGTEEEECCCCSSCCSS---CEEEECTTSCEEEECCCCCSSS
T ss_pred CCcccceeEEEEecCCcEEEeecCC----CcceeEecCccCcccccccccccccc---cceeeecCCceeeecccccccc
Confidence 22222222 345689999887654 34688999999999987 44443322 344444 7888888872 1
Q ss_pred CCCEEEEEEeCCCceeeEEEECCCCce------------eee-EEEeeCCcEEEEE-cCCeEEEEeCCCCcEEEEEE
Q 048178 275 VDHCFKIWVMQKKNWIKQSSVGPFIGI------------FQP-LLFWKKGAFFVES-NSSQLLLYEPGTGELRDFEL 337 (376)
Q Consensus 275 ~~~~l~vW~l~~~~W~~~~~i~~~~~~------------~~~-~~~~~~g~i~~~~-~~~~~~~yd~~t~~~~~v~~ 337 (376)
....+++|.....+|..+..+ +.... ..+ +....+|+++... .......||..+..|+....
T Consensus 145 ~~~~v~~yd~~~~~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~ 220 (387)
T d1k3ia3 145 FEKNGEVYSPSSKTWTSLPNA-KVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGK 220 (387)
T ss_dssp CCCCEEEEETTTTEEEEETTS-CSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEE
T ss_pred ccceeeeecCCCCceeecCCC-cccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccc
Confidence 235688888888999876543 11100 112 2223467776654 34568899999999987743
|
| >d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=1e-07 Score=71.07 Aligned_cols=44 Identities=30% Similarity=0.460 Sum_probs=38.6
Q ss_pred CCHHHHHHHHhcCCccccceeeecchhhhhhcCChHHHHHHhhc
Q 048178 9 SPEDIMIEILSRLPVKSLIRLRCVCKSWYALIKNPNFISMHLKN 52 (376)
Q Consensus 9 LP~Dll~eIl~rLp~~~l~r~r~VcK~W~~li~~p~F~~~~~~~ 52 (376)
|+|||+..||+.|++++|.++++|||+|+.+++++.+-+.+..+
T Consensus 18 l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~~~~ 61 (118)
T d1p22a1 18 GLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIER 61 (118)
T ss_dssp TCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHH
T ss_pred ChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence 34699999999999999999999999999999998887765443
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=91.96 E-value=2.7 Score=34.50 Aligned_cols=208 Identities=8% Similarity=-0.015 Sum_probs=105.6
Q ss_pred eeecceEEEee-cCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcce
Q 048178 106 GLYCGIVFIEG-LNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSL 184 (376)
Q Consensus 106 ~s~~Gll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 184 (376)
+..+|-|...+ ....++-+||.|++....+.+.. ..+++.+. +.--+++. ...
T Consensus 26 d~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~~~-----------~~~i~~~~--dg~l~va~-------------~~g 79 (295)
T d2ghsa1 26 DPASGTAWWFNILERELHELHLASGRKTVHALPFM-----------GSALAKIS--DSKQLIAS-------------DDG 79 (295)
T ss_dssp ETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSC-----------EEEEEEEE--TTEEEEEE-------------TTE
T ss_pred ECCCCEEEEEECCCCEEEEEECCCCeEEEEECCCC-----------cEEEEEec--CCCEEEEE-------------eCc
Confidence 34456555554 45678899999998766543321 12334332 22223322 336
Q ss_pred EEEEEcCCCceEeccccCcccc--CCCC-eEEECceEEEEeeecCCC-CccEEEEEECCCceEeeecCCCCCCCCCceeE
Q 048178 185 VTVYNLSTNSWRNLKSIDYTMR--LSSE-RTYFDGAFYWLLKLENDN-DNYVILSFHMAEEKFQEIQGPCTLESSLDVTL 260 (376)
Q Consensus 185 ~~vyss~t~~W~~~~~~~~~~~--~~~~-~v~~~G~lywl~~~~~~~-~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l 260 (376)
+..|++.+++.+.+.......+ .... .+--+|.+|+-....... ....+..+ ...+...+..+... ...+
T Consensus 80 l~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~--~~g~~~~~~~~~~~----~Ng~ 153 (295)
T d2ghsa1 80 LFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV--AKGKVTKLFADISI----PNSI 153 (295)
T ss_dssp EEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE--ETTEEEEEEEEESS----EEEE
T ss_pred cEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeee--cCCcEEEEeeccCC----ccee
Confidence 8889999998887654332222 1111 233367765544332211 12233333 34444443211111 1223
Q ss_pred EEe-cCe-EEEEEecCCCCEEEEEEeCC--Cce----eeEEEECCCCceeeeEEEeeCCcEEEEE-cCCeEEEEeCCCCc
Q 048178 261 GIY-DQS-LSLLLLDTVDHCFKIWVMQK--KNW----IKQSSVGPFIGIFQPLLFWKKGAFFVES-NSSQLLLYEPGTGE 331 (376)
Q Consensus 261 ~~~-~g~-L~l~~~~~~~~~l~vW~l~~--~~W----~~~~~i~~~~~~~~~~~~~~~g~i~~~~-~~~~~~~yd~~t~~ 331 (376)
+.. +++ ++++.. ....+..+.++. ..+ ..............-+++..+|.|++.. ..+++..||++++.
T Consensus 154 ~~s~d~~~l~~~dt--~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~~ 231 (295)
T d2ghsa1 154 CFSPDGTTGYFVDT--KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNH 231 (295)
T ss_dssp EECTTSCEEEEEET--TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCE
T ss_pred eecCCCceEEEeec--ccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCCCcE
Confidence 333 343 555443 356666666654 222 1122221112222334455578899875 56789999999999
Q ss_pred EEEEEEecceEEEEEe
Q 048178 332 LRDFELECCWFSIYIY 347 (376)
Q Consensus 332 ~~~v~~~~~~~~~~~y 347 (376)
++++.+....+..+.|
T Consensus 232 ~~~i~lP~~~~T~~~F 247 (295)
T d2ghsa1 232 IARYEVPGKQTTCPAF 247 (295)
T ss_dssp EEEEECSCSBEEEEEE
T ss_pred eeEecCCCCceEEEEE
Confidence 9999886443444444
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=87.81 E-value=6.3 Score=32.46 Aligned_cols=207 Identities=9% Similarity=0.002 Sum_probs=102.3
Q ss_pred cceEEEee-cCCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEE
Q 048178 109 CGIVFIEG-LNNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTV 187 (376)
Q Consensus 109 ~Gll~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~v 187 (376)
+|-|.+.+ ....++.+||.+++.......... ...++.+++.. ...|... .. . .....+..
T Consensus 50 ~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~---------~p~gla~~~dG-~l~va~~-----~~-~--~~~~~i~~ 111 (319)
T d2dg1a1 50 QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKA---------NPAAIKIHKDG-RLFVCYL-----GD-F--KSTGGIFA 111 (319)
T ss_dssp TSCEEEEETTTCEEEEECTTTCCEEEEEECSSS---------SEEEEEECTTS-CEEEEEC-----TT-S--SSCCEEEE
T ss_pred CCCEEEEECCCCEEEEEECCCCeEEEEEeCCCC---------CeeEEEECCCC-CEEEEec-----CC-C--ccceeEEE
Confidence 45444443 355677888888764432211110 02467776543 2222111 00 0 11334555
Q ss_pred EEcCCCceEeccccCccccCCC-CeEEECceEEEEeeecCCC-CccEEEEEECCCceEeeecCCCCCCCCCceeEEEe-c
Q 048178 188 YNLSTNSWRNLKSIDYTMRLSS-ERTYFDGAFYWLLKLENDN-DNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIY-D 264 (376)
Q Consensus 188 yss~t~~W~~~~~~~~~~~~~~-~~v~~~G~lywl~~~~~~~-~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~-~ 264 (376)
++..++................ -.+--+|.+|+-....... ....+..+|........+.-+.. ...-++.. +
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~----~pnGia~s~d 187 (319)
T d2dg1a1 112 ATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNIS----VANGIALSTD 187 (319)
T ss_dssp ECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEES----SEEEEEECTT
T ss_pred EcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccc----eeeeeeeccc
Confidence 6666655443321111111111 1233468877654332111 23457888877666554411100 01234443 4
Q ss_pred Ce-EEEEEecCCCCEEEEEEeCC---CceeeEEEEC-CCCceeee--EEEeeCCcEEEEE-cCCeEEEEeCCCCcEEEEE
Q 048178 265 QS-LSLLLLDTVDHCFKIWVMQK---KNWIKQSSVG-PFIGIFQP--LLFWKKGAFFVES-NSSQLLLYEPGTGELRDFE 336 (376)
Q Consensus 265 g~-L~l~~~~~~~~~l~vW~l~~---~~W~~~~~i~-~~~~~~~~--~~~~~~g~i~~~~-~~~~~~~yd~~t~~~~~v~ 336 (376)
|+ |++.... ...+..+.++. ..+....... .......| +++..+|.|++.. ..+++..||++.+.+++|.
T Consensus 188 g~~lyvad~~--~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G~~l~~i~ 265 (319)
T d2dg1a1 188 EKVLWVTETT--ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQIL 265 (319)
T ss_dssp SSEEEEEEGG--GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEEEE
T ss_pred cceEEEeccc--CCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCCcEEEEEe
Confidence 54 7776654 56777777665 2232222220 11112334 4555688899875 4688999999999999997
Q ss_pred Eec
Q 048178 337 LEC 339 (376)
Q Consensus 337 ~~~ 339 (376)
+..
T Consensus 266 ~P~ 268 (319)
T d2dg1a1 266 IPG 268 (319)
T ss_dssp CTT
T ss_pred CCC
Confidence 753
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=86.46 E-value=6.8 Score=31.41 Aligned_cols=202 Identities=12% Similarity=0.115 Sum_probs=107.6
Q ss_pred eecceEEEeec-CCeEEEEecCccceeecCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceE
Q 048178 107 LYCGIVFIEGL-NNRITLWNIATRESVTLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLV 185 (376)
Q Consensus 107 s~~Gll~~~~~-~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 185 (376)
+.+|-|.+.+. ...+.++||-.......+.......... ...++..+...+.+-++.. .....+
T Consensus 31 d~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~----~p~~~~~~~~~~~~~~~~~-----------~~~~~i 95 (279)
T d1q7fa_ 31 NAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLL----YPNRVAVVRNSGDIIVTER-----------SPTHQI 95 (279)
T ss_dssp CTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBS----SEEEEEEETTTTEEEEEEC-----------GGGCEE
T ss_pred cCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCccccc----ccccccccccccccceecc-----------CCcccc
Confidence 34777777754 5678899987554444544322211111 1234555544444332221 124467
Q ss_pred EEEEcCCCceEeccccCccccCCCCeEE--ECceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEEe
Q 048178 186 TVYNLSTNSWRNLKSIDYTMRLSSERTY--FDGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGIY 263 (376)
Q Consensus 186 ~vyss~t~~W~~~~~~~~~~~~~~~~v~--~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~~ 263 (376)
.+++.....++......... ..++. -+|.+|..... ...+..||........+..+..... ...++.-
T Consensus 96 ~~~~~~g~~~~~~~~~~~~~---p~~~avd~~G~i~v~~~~-----~~~~~~~~~~g~~~~~~g~~~~~~~--~~~i~~d 165 (279)
T d1q7fa_ 96 QIYNQYGQFVRKFGATILQH---PRGVTVDNKGRIIVVECK-----VMRVIIFDQNGNVLHKFGCSKHLEF--PNGVVVN 165 (279)
T ss_dssp EEECTTSCEEEEECTTTCSC---EEEEEECTTSCEEEEETT-----TTEEEEECTTSCEEEEEECTTTCSS--EEEEEEC
T ss_pred ccccccccceeecCCCcccc---cceeccccCCcEEEEeec-----cceeeEeccCCceeecccccccccc--cceeeec
Confidence 77777666666554221111 12333 35777765432 3478889988766665543332221 1233333
Q ss_pred -cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEE--EeeCCcEEEEEc--CCeEEEEeCCCCcEEEEEEe
Q 048178 264 -DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLL--FWKKGAFFVESN--SSQLLLYEPGTGELRDFELE 338 (376)
Q Consensus 264 -~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~--~~~~g~i~~~~~--~~~~~~yd~~t~~~~~v~~~ 338 (376)
+|.++++... ...+.++..+ +++. ..++....+..|.+ +..+|.||+... ...+..|+.+.+-...+...
T Consensus 166 ~~g~i~v~d~~--~~~V~~~d~~-G~~~--~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~ 240 (279)
T d1q7fa_ 166 DKQEIFISDNR--AHCVKVFNYE-GQYL--RQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESK 240 (279)
T ss_dssp SSSEEEEEEGG--GTEEEEEETT-CCEE--EEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEES
T ss_pred cceeEEeeecc--ccceeeeecC-Ccee--eeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCCCEEEEEeCC
Confidence 5668777664 5566666544 4443 33432223345554 455788998853 34689999887766666543
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.66 E-value=7.4 Score=32.41 Aligned_cols=140 Identities=9% Similarity=0.077 Sum_probs=77.0
Q ss_pred cceEEEEEcCCCceEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEeee-cCCCCCCCCCce
Q 048178 182 FSLVTVYNLSTNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCTLESSLDV 258 (376)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~~~~~ 258 (376)
...+.||+..++.+..+..+..+. ....++.+ +|.+-..+.. ...|..+|+.+..+... .+...... -.
T Consensus 28 ~~~i~iw~~~~~~~~~~~~l~gH~-~~V~~l~fsp~~~~l~s~s~-----D~~i~vWd~~~~~~~~~~~~~~~~~~--v~ 99 (371)
T d1k8kc_ 28 NHEVHIYEKSGNKWVQVHELKEHN-GQVTGVDWAPDSNRIVTCGT-----DRNAYVWTLKGRTWKPTLVILRINRA--AR 99 (371)
T ss_dssp SSEEEEEEEETTEEEEEEEEECCS-SCEEEEEEETTTTEEEEEET-----TSCEEEEEEETTEEEEEEECCCCSSC--EE
T ss_pred CCEEEEEECCCCCEEEEEEecCCC-CCEEEEEECCCCCEEEEEEC-----CCeEEEEeeccccccccccccccccc--cc
Confidence 457999999998887665332111 11123322 4553322322 23688889888887654 44322111 11
Q ss_pred eEEEe-cCeEEEEEecCCCCEEEEEEeCC-Cc-eeeEEEECCCCceeeeEEEeeCCcEEEE-EcCCeEEEEeCCCCc
Q 048178 259 TLGIY-DQSLSLLLLDTVDHCFKIWVMQK-KN-WIKQSSVGPFIGIFQPLLFWKKGAFFVE-SNSSQLLLYEPGTGE 331 (376)
Q Consensus 259 ~l~~~-~g~L~l~~~~~~~~~l~vW~l~~-~~-W~~~~~i~~~~~~~~~~~~~~~g~i~~~-~~~~~~~~yd~~t~~ 331 (376)
.+... +|+..+++.. ...+.+|.++. .. |.......+......-+.+.++|..++. ..++.+..||...+.
T Consensus 100 ~i~~~p~~~~l~~~s~--d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~ 174 (371)
T d1k8kc_ 100 CVRWAPNEKKFAVGSG--SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKE 174 (371)
T ss_dssp EEEECTTSSEEEEEET--TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTT
T ss_pred ccccccccccceeecc--cCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCc
Confidence 22222 5555555544 67899999887 44 4444443222222333555667776654 567778999987654
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=84.07 E-value=12 Score=32.15 Aligned_cols=194 Identities=10% Similarity=-0.024 Sum_probs=103.9
Q ss_pred ceEEEe-ecCCeEEEEecCccceee-cCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCcceEEE
Q 048178 110 GIVFIE-GLNNRITLWNIATRESVT-LPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPFSLVTV 187 (376)
Q Consensus 110 Gll~~~-~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~v 187 (376)
.++++. .+...+.|||+.|++.+. ++.-. . ..++.|.|. +.|-.++- ..-.+.+
T Consensus 32 ~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-----~------~~~v~fSpD-G~~l~~~s------------~dg~v~~ 87 (432)
T d1qksa2 32 NLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-----A------VHISRLSAS-GRYLFVIG------------RDGKVNM 87 (432)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEECSS-----C------EEEEEECTT-SCEEEEEE------------TTSEEEE
T ss_pred cEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-----C------eeEEEECCC-CCEEEEEc------------CCCCEEE
Confidence 354333 456788999999999665 33211 0 235566553 34443321 1347888
Q ss_pred EEcCCCceEeccccCccccCCCCeE------EECceEEEEeeecCCCCccEEEEEECCCceEeee-cCCCCCCC-----C
Q 048178 188 YNLSTNSWRNLKSIDYTMRLSSERT------YFDGAFYWLLKLENDNDNYVILSFHMAEEKFQEI-QGPCTLES-----S 255 (376)
Q Consensus 188 yss~t~~W~~~~~~~~~~~~~~~~v------~~~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~~~-----~ 255 (376)
++..++.-+.+...+.... ..++ .-+|...+..... ...+..+|.++.+.... +....... .
T Consensus 88 ~d~~t~~~~~~~~i~~~~~--~~~~~~s~~~SpDG~~l~vs~~~----~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~ 161 (432)
T d1qksa2 88 IDLWMKEPTTVAEIKIGSE--ARSIETSKMEGWEDKYAIAGAYW----PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHP 161 (432)
T ss_dssp EETTSSSCCEEEEEECCSE--EEEEEECCSTTCTTTEEEEEEEE----TTEEEEEETTTCCEEEEEECCEECTTTCCEES
T ss_pred EEeeCCCceEEEEEecCCC--CCCeEEecccCCCCCEEEEEcCC----CCeEEEEeCccccceeeeccCCccccceeccC
Confidence 9988775433322211000 0111 1267654444443 44799999988765443 32211111 0
Q ss_pred CceeE--EE-ecCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEE-EE-cCCeEEEEeCCCC
Q 048178 256 LDVTL--GI-YDQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFV-ES-NSSQLLLYEPGTG 330 (376)
Q Consensus 256 ~~~~l--~~-~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~-~~-~~~~~~~yd~~t~ 330 (376)
..... .. -+|..+++.. .....+.+|...+.+=.++.++ +......-+++..+|..++ .. ....+.+.|.+++
T Consensus 162 ~~~~~~v~~s~dg~~~~vs~-~~~~~i~~~d~~~~~~~~~~~i-~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~ 239 (432)
T d1qksa2 162 EPRVAAILASHYRPEFIVNV-KETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG 239 (432)
T ss_dssp CCCEEEEEECSSSSEEEEEE-TTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred CCceeEEEECCCCCEEEEEE-ccCCeEEEEEccCCCcceEEEE-cccCccccceECCCCCEEEEeccccceEEEeecccc
Confidence 11112 22 2555555554 3367777777766444445556 4433344567777888544 33 4567999999988
Q ss_pred cEEEE
Q 048178 331 ELRDF 335 (376)
Q Consensus 331 ~~~~v 335 (376)
+....
T Consensus 240 ~~~~~ 244 (432)
T d1qksa2 240 KLVAI 244 (432)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 77654
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=83.32 E-value=10 Score=30.76 Aligned_cols=107 Identities=11% Similarity=0.109 Sum_probs=58.9
Q ss_pred CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeEEE-ecCeEEEEEecCCCCEEEEEEeCCCceeeEE
Q 048178 215 DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTLGI-YDQSLSLLLLDTVDHCFKIWVMQKKNWIKQS 293 (376)
Q Consensus 215 ~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l~~-~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~ 293 (376)
+|.+||+... ...|..+|+++.+.+..++|.... .++. -+|.|.+... ..+.++..+.++++.+.
T Consensus 29 ~~~l~wvDi~-----~~~I~r~d~~~g~~~~~~~~~~~~-----~i~~~~dg~l~va~~----~gl~~~d~~tg~~~~l~ 94 (295)
T d2ghsa1 29 SGTAWWFNIL-----ERELHELHLASGRKTVHALPFMGS-----ALAKISDSKQLIASD----DGLFLRDTATGVLTLHA 94 (295)
T ss_dssp TTEEEEEEGG-----GTEEEEEETTTTEEEEEECSSCEE-----EEEEEETTEEEEEET----TEEEEEETTTCCEEEEE
T ss_pred CCEEEEEECC-----CCEEEEEECCCCeEEEEECCCCcE-----EEEEecCCCEEEEEe----CccEEeecccceeeEEe
Confidence 6899998765 348999999999988888876432 2332 4566655432 23444444445555554
Q ss_pred EECCCCce--eeeEEEeeCCcEEEEEc-----CCeEEEEeCCCCcEEEE
Q 048178 294 SVGPFIGI--FQPLLFWKKGAFFVESN-----SSQLLLYEPGTGELRDF 335 (376)
Q Consensus 294 ~i~~~~~~--~~~~~~~~~g~i~~~~~-----~~~~~~yd~~t~~~~~v 335 (376)
...+.... .--..+..+|.|++... ...-..|.+..++++++
T Consensus 95 ~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~ 143 (295)
T d2ghsa1 95 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKL 143 (295)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEE
T ss_pred eeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEE
Confidence 33111111 11123344677776532 12234444455555554
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.32 E-value=5.6 Score=33.20 Aligned_cols=95 Identities=8% Similarity=0.037 Sum_probs=54.4
Q ss_pred cEEEEEECCCceEeee-cCCCCCCCCCceeEEEe-cCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEe
Q 048178 231 YVILSFHMAEEKFQEI-QGPCTLESSLDVTLGIY-DQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFW 308 (376)
Q Consensus 231 ~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~ 308 (376)
..|..+|.+++++..+ .+..... .-..+... +|++.+.+.. +..+.||.+++..|.....+.....-..-+.+.
T Consensus 29 ~~i~iw~~~~~~~~~~~~l~gH~~--~V~~l~fsp~~~~l~s~s~--D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~ 104 (371)
T d1k8kc_ 29 HEVHIYEKSGNKWVQVHELKEHNG--QVTGVDWAPDSNRIVTCGT--DRNAYVWTLKGRTWKPTLVILRINRAARCVRWA 104 (371)
T ss_dssp SEEEEEEEETTEEEEEEEEECCSS--CEEEEEEETTTTEEEEEET--TSCEEEEEEETTEEEEEEECCCCSSCEEEEEEC
T ss_pred CEEEEEECCCCCEEEEEEecCCCC--CEEEEEECCCCCEEEEEEC--CCeEEEEeecccccccccccccccccccccccc
Confidence 3688899888877665 3322111 11234333 5665554444 689999999988898887662222223334555
Q ss_pred eCCcEEEE-EcCCeEEEEeCCC
Q 048178 309 KKGAFFVE-SNSSQLLLYEPGT 329 (376)
Q Consensus 309 ~~g~i~~~-~~~~~~~~yd~~t 329 (376)
+++..++. ..++.+..++.+.
T Consensus 105 p~~~~l~~~s~d~~i~i~~~~~ 126 (371)
T d1k8kc_ 105 PNEKKFAVGSGSRVISICYFEQ 126 (371)
T ss_dssp TTSSEEEEEETTSSEEEEEEET
T ss_pred cccccceeecccCcceeeeeec
Confidence 67775544 4555455554433
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.44 E-value=12 Score=30.36 Aligned_cols=200 Identities=11% Similarity=0.066 Sum_probs=98.1
Q ss_pred eeeeecceEEEeecCCeEEEEecCccceee-cCCCCCCCCCccccccceEEEeeeCCCCCeEEEEEEEEEecCCCCCCCc
Q 048178 104 FKGLYCGIVFIEGLNNRITLWNIATRESVT-LPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCPF 182 (376)
Q Consensus 104 ~~~s~~Gll~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~ 182 (376)
+.-|.+|-.+...++..+.|||..+.+... +........... ...+.+.|. +.+-+++ . ..
T Consensus 57 v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~-----I~~v~~s~d-g~~l~s~-~-----------~d 118 (337)
T d1gxra_ 57 VTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNY-----IRSCKLLPD-GCTLIVG-G-----------EA 118 (337)
T ss_dssp EEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSB-----EEEEEECTT-SSEEEEE-E-----------SS
T ss_pred EEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCc-----EEEEEEcCC-CCEEEEe-e-----------cc
Confidence 333556665555556678999977654321 111111111111 234555443 3442222 1 14
Q ss_pred ceEEEEEcCCCceEeccccCccccCCCCeEEE--CceEEEEeeecCCCCccEEEEEECCCceEeeecCCCCCCCCCceeE
Q 048178 183 SLVTVYNLSTNSWRNLKSIDYTMRLSSERTYF--DGAFYWLLKLENDNDNYVILSFHMAEEKFQEIQGPCTLESSLDVTL 260 (376)
Q Consensus 183 ~~~~vyss~t~~W~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~~l 260 (376)
..+.+|+......+.......... ....+.+ +|.+...+.. ...+..+|+.+.+........... -..+
T Consensus 119 g~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~-----d~~i~~~~~~~~~~~~~~~~~~~~---v~~l 189 (337)
T d1gxra_ 119 STLSIWDLAAPTPRIKAELTSSAP-ACYALAISPDSKVCFSCCS-----DGNIAVWDLHNQTLVRQFQGHTDG---ASCI 189 (337)
T ss_dssp SEEEEEECCCC--EEEEEEECSSS-CEEEEEECTTSSEEEEEET-----TSCEEEEETTTTEEEEEECCCSSC---EEEE
T ss_pred cccccccccccccccccccccccc-ccccccccccccccccccc-----cccccccccccccccccccccccc---cccc
Confidence 578889887766554332211111 0111212 3443333332 347888998887654442221111 1233
Q ss_pred EE-ecCeEEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEEeeCCcEEE-EEcCCeEEEEeCCCCcEEEE
Q 048178 261 GI-YDQSLSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLFWKKGAFFV-ESNSSQLLLYEPGTGELRDF 335 (376)
Q Consensus 261 ~~-~~g~L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~-~~~~~~~~~yd~~t~~~~~v 335 (376)
.. .+|...+++.. +..+.+|.++..+ .+... ....-..-+++.++++.++ ...++.+..||.++.+....
T Consensus 190 ~~s~~~~~~~~~~~--d~~v~i~d~~~~~--~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 261 (337)
T d1gxra_ 190 DISNDGTKLWTGGL--DNTVRSWDLREGR--QLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL 261 (337)
T ss_dssp EECTTSSEEEEEET--TSEEEEEETTTTE--EEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE
T ss_pred cccccccccccccc--cccccccccccce--eeccc-ccccceEEEEEcccccccceeccccccccccccccccccc
Confidence 33 24555555544 6889999987732 22223 1221123345566777555 45677899999988876544
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=80.39 E-value=11 Score=29.41 Aligned_cols=99 Identities=6% Similarity=0.019 Sum_probs=56.0
Q ss_pred cEEEEEECCCceEeee-cCCCCCCCCCceeEEE-ecCe-EEEEEecCCCCEEEEEEeCCCceeeEEEECCCCceeeeEEE
Q 048178 231 YVILSFHMAEEKFQEI-QGPCTLESSLDVTLGI-YDQS-LSLLLLDTVDHCFKIWVMQKKNWIKQSSVGPFIGIFQPLLF 307 (376)
Q Consensus 231 ~~i~~fD~~~e~~~~i-~lP~~~~~~~~~~l~~-~~g~-L~l~~~~~~~~~l~vW~l~~~~W~~~~~i~~~~~~~~~~~~ 307 (376)
..+...+......... ..+... ..+.. .+|. +++...+.....+.+|.+.. ...+.++ +......-+++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t--~~~~~~~-~~~~~~~~va~ 251 (301)
T d1l0qa2 180 MSISVIDTVTNSVIDTVKVEAAP-----SGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT--NKITARI-PVGPDPAGIAV 251 (301)
T ss_dssp TEEEEEETTTTEEEEEEECSSEE-----EEEEECTTSSEEEEEEECSSCCEEEEEETTT--TEEEEEE-ECCSSEEEEEE
T ss_pred cccccccccceeeeecccccCCc-----ceeeccccccccccccccceeeeeeeeecCC--CeEEEEE-cCCCCEEEEEE
Confidence 3566666665554332 333221 12222 3444 66655544456788887665 4555566 33322334667
Q ss_pred eeCCc-EEEEE-cCCeEEEEeCCCCcE-EEEEE
Q 048178 308 WKKGA-FFVES-NSSQLLLYEPGTGEL-RDFEL 337 (376)
Q Consensus 308 ~~~g~-i~~~~-~~~~~~~yd~~t~~~-~~v~~ 337 (376)
.++|+ +++.. .++.+.+||++|++. ..+.+
T Consensus 252 spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v 284 (301)
T d1l0qa2 252 TPDGKKVYVALSFCNTVSVIDTATNTITATMAV 284 (301)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred eCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence 77887 55554 467899999999874 44544
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=80.18 E-value=8.3 Score=33.27 Aligned_cols=111 Identities=11% Similarity=0.131 Sum_probs=62.0
Q ss_pred CceEEEEeeecCCCCccEEEEEECCC---ceEeeecCCCCCCCCCceeEEEe-cCeEEEEEecCCCCEEEEEEeCCCcee
Q 048178 215 DGAFYWLLKLENDNDNYVILSFHMAE---EKFQEIQGPCTLESSLDVTLGIY-DQSLSLLLLDTVDHCFKIWVMQKKNWI 290 (376)
Q Consensus 215 ~G~lywl~~~~~~~~~~~i~~fD~~~---e~~~~i~lP~~~~~~~~~~l~~~-~g~L~l~~~~~~~~~l~vW~l~~~~W~ 290 (376)
++.+|.++..+ . ....+++.|+++ ..|+.+-.+..... ....... ++.|.+...+.....+.|+.++.+.|.
T Consensus 297 ~~~~~~~Tn~~-a-~~~~L~~~~~~~~~~~~w~~vi~~~~~~~--~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~ 372 (430)
T d1qfma1 297 GTVFTFKTNRH-S-PNYRLINIDFTDPEESKWKVLVPEHEKDV--LEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALL 372 (430)
T ss_dssp TTEEEEEECTT-C-TTCEEEEEETTBCCGGGCEEEECCCSSCE--EEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred CceeecccCcc-c-ccceeEEecCCCCccccceEEecccCcce--eeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEE
Confidence 44555555432 2 256899998874 45666533222111 1223334 555666655555678888888878786
Q ss_pred eEEEECCCCceeeeEEEee---CCcEEEEE----cCCeEEEEeCCCCcEE
Q 048178 291 KQSSVGPFIGIFQPLLFWK---KGAFFVES----NSSQLLLYEPGTGELR 333 (376)
Q Consensus 291 ~~~~i~~~~~~~~~~~~~~---~g~i~~~~----~~~~~~~yd~~t~~~~ 333 (376)
.+.-. +. ....++.. +.++++.. ....++.||++|++++
T Consensus 373 ~~~~~-~~---~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~~ 418 (430)
T d1qfma1 373 KIFPL-EV---GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELE 418 (430)
T ss_dssp EEECC-CS---SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSCC
T ss_pred EecCC-CC---ceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCcc
Confidence 65322 22 22233332 23466652 2577999999998654
|