Citrus Sinensis ID: 048253

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320---
Protein Sequence
MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDKKDWEIEDWKMIGWKKMRNALMVVASLTATMAFQAGVNPPHGPWQDTSFSSSQGHATAHRYTCILFFNTTGFLASLSIILLLSIG
Secondary Structure (PSIPRED)
cccHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccEEcccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHcccHHHHHHHHHccccccHHcccccccccHHHHHHHcccHHHHHHHHHccccHHHHHccccccHHHHHHHcccHHHHHHHHHcccccEEEccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccHHHcccccccccHHHHHHHcccHHHHHccccHHHHHHcccccHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccHHHHHcHHHHHHHHHHHHHHHHHccccccccccccccccHHHcccHHHHEEEEHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MKSMLYEAALKGCEPTLLELLQQDQLIIGRvgvnclsefpLHAAALLghvdfegeirrqkpelageldsnqfsALHIASQKVHVDKIKALLQVnpawcfagdldgsplHLAAMKGRIDVLEELFRtrplaasatMIWGETILHLCVKHNQLDALKFLLdnmddpqflnaeddygMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSkrdkkdweiEDWKMIGWKKMRNALMVVASLTATMafqagvnpphgpwqdtsfsssqghatAHRYTCILFFNTTGFLASLSIILLLSIG
Flexible Loop (DISEMBL)
MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLaqskrdkkdweIEDWKMIGWKKMRNALMVVASLTATMAFQAGVNPPHGPWQDTSFSSSQGHATAHRYTCILFFNTTGFLASLSIILLLSIG
Low Complexity Region (SEG)
MKSMLYEAALKGCEPTllellqqdqlIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDKKDWEIEDWKMIGWKKMRNALMVVASLTATMAFQAGVNPPHGPWQDTSFSSSQGHATAHRYTCILFFNTTGFLAslsiilllsiG
Disordered region (IsUnstruct)
****LYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIR************NQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDKKDWEIEDWKMIGWKKMRNALMVVASLTATMAFQAGVN****************HATAHRYTCILFFNTTGFLASLSIILLLS**
Disordered Region (DISOPRED)
MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALD**********************KKMRNALMVVASLTATMAFQAGVNPPHGPWQDTSFSSSQGHATAHRYTCILFFNTTGFLASLSIILLLSIG
Disordered Region (DISEMBL)
********ALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDKKDWEIEDWKMIGWKKMRNALMVVASLTATMAFQAGVNPPHGPWQ***********TAHRYTCILFFNTTGFLASLSIILLLSIG
Disordered Region (DISPRO)
*KSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDKKDWEIEDWKMIGWKKMRNALMVVASLTATMAFQAGVNPPHGPWQDTSFSSSQGHATAHRYTCILFFNTTGFLASLSIILLLSIG
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDKKDWEIEDWKMIGWKKMRNALMVVASLTATMAFQAGVNPPHGPWQDTSFSSSQGHATAHRYTCILFFNTTGFLASLSIILLLSIG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	323	2.2.26 [Sep-21-2011]
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.532	0.323	0.265	1e-07
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	no	0.383	0.065	0.330	1e-07
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.594	0.366	0.26	1e-06
Q12955	4377	Ankyrin-3 OS=Homo sapiens	no	no	0.377	0.027	0.328	2e-06
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.863	0.472	0.240	2e-06
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	no	0.383	0.063	0.323	2e-06
Q9XZC0	1413	Alpha-latrocrustotoxin-Lt	N/A	no	0.421	0.096	0.315	3e-06
Q02357	1862	Ankyrin-1 OS=Mus musculus	no	no	0.374	0.064	0.328	6e-06
Q63369	522	Nuclear factor NF-kappa-B	no	no	0.377	0.233	0.303	9e-06
A5PMU4	1280	Ankyrin repeat and steril	no	no	0.643	0.162	0.260	1e-05

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 20/192 (10%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCF 99
             H AA  GH+    E+ R  PEL    D++  S L+ A+ + H++ + A+L V+P+   
Sbjct: 97  AFHVAAKRGHLGIVKELLRLWPELCRICDASNTSPLYAAAVQDHLEIVNAMLDVDPSCAM 156

Query: 100 AGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLL 158
               +G + LH A   G + +++ L              G+T LH+ VK   L+ ++ +L
Sbjct: 157 IVRKNGKTSLHTAGRYGLLRIVKALIEKDAAIVGVKDKKGQTALHMAVKGRSLEVVEEIL 216

Query: 159 DNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEV 218
               D   LN  D  G T   +A                        +   L T T IEV
Sbjct: 217 QA--DYTILNERDRKGNTALHIAT-----------------RKARPQITSLLLTFTAIEV 257

Query: 219 NALNANGFMALD 230
           NA+N     A+D
Sbjct: 258 NAINNQKETAMD 269

Arabidopsis thaliana (taxid: 3702)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 63/130 (48%), Gaps = 6/130 (4%)

Query: 38  EFPLHAAALLGHVDFEGEI--RRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNP 95
           + PLH AA +GH +    +      P LA    +   + LHIA+++ HV+ + ALL+   
Sbjct: 471 QTPLHCAARIGHTNMVKLLLENNANPNLA---TTAGHTPLHIAAREGHVETVLALLEKEA 527

Query: 96  AWCFAGDLDGSPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALK 155
           +         +PLH+AA  G++ V E L   R    +A    G T LH+ V HN LD +K
Sbjct: 528 SQACMTKKGFTPLHVAAKYGKVRVAE-LLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVK 586

Query: 156 FLLDNMDDPQ 165
            LL     P 
Sbjct: 587 LLLPRGGSPH 596

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 92/200 (46%), Gaps = 8/200 (4%)

Query: 2   KSMLYEAALKGCEPTLLELLQQ-DQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQK 60
           ++ LY AA  G    +  L++  D ++ G    N    F  H AA  G++     +    
Sbjct: 57  ETALYVAAEYGYTDMVKILMKHSDSVLAGTKAKNGFDAF--HIAAKNGNLQVLDVLIEAN 114

Query: 61  PELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDV 119
           PEL+   DS++ +ALH A+ + H + +  LL            +G + LH AA  G   +
Sbjct: 115 PELSFTFDSSKTTALHTAASQGHGEIVCFLLDKGVDLAAIARSNGKTALHSAARNGHTVI 174

Query: 120 LEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQ 179
           +++L   +    +     G+T LH+ VK    + +  L++   D   +N+ D+ G   T 
Sbjct: 175 VKKLIEKKAGMVTRVDKKGQTALHMAVKGQNTEIVDVLMEA--DGSLINSADNKGN--TP 230

Query: 180 LAVAVKLCFQNLVELVEEYC 199
           L +AV+     +V+ V +YC
Sbjct: 231 LHIAVRKNRAEIVQTVLKYC 250

Arabidopsis thaliana (taxid: 3702)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score = 53.9 bits (128), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 68/128 (53%), Gaps = 6/128 (4%)

Query: 68  DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRIDVLEELFRTR 127
           + N  +ALH+AS++ HV+ +  LLQ       A     + LH+A++ G+ +V++ L  T 
Sbjct: 71  NQNGLNALHLASKEGHVEVVSELLQREANVDAATKKGNTALHIASLAGQAEVVKVLV-TN 129

Query: 128 PLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLC 187
               +A    G T L++  + N L+ +KFLLDN    Q L  ED +    T LAVA++  
Sbjct: 130 GANVNAQSQNGFTPLYMAAQENHLEVVKFLLDNGAS-QSLATEDGF----TPLAVALQQG 184

Query: 188 FQNLVELV 195
              +V L+
Sbjct: 185 HDQVVSLL 192

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 132/362 (36%), Gaps = 83/362 (22%)

Query: 33  VNCLSEFPLHAAALLGHVDFEGEI-RRQKPELAGELDSNQFSALHIASQKVHVDKIKALL 91
           VN L E  L  AA  GH+D   E+ +    E   + + + +  LHIA+ + H   ++ LL
Sbjct: 125 VNELGETALFTAADKGHLDVVKELLKYSSRESIAKKNRSGYDPLHIAAIQGHHAIVEVLL 184

Query: 92  Q----------------------------VNPAWCFAGDL-------DGSPLHLAAMKGR 116
                                        VN     AG+L       + + LHLAA +G 
Sbjct: 185 DHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSKAGNLLEISRSNNKNALHLAARQGH 244

Query: 117 IDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMT 176
           ++V++ L    P  A      G+T LH+ VK    + +K LLD   DP  +   D     
Sbjct: 245 VEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLD--ADPAIVMQPDKS--C 300

Query: 177 ITQLAVAVKLCFQNLVELVEEYCHS-----------------------KWGYVIRFLTTR 213
            T L VA +     +VEL+     +                       +  Y+   L   
Sbjct: 301 NTALHVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDIAEGLPLSEESSYIKECLARS 360

Query: 214 TMIEVNALNANGFMALDT-----------LAQSKRDKKD-----WEIEDWKMIGWKKMRN 257
             +  N LN        T           L Q+KR  K+      E+      G     N
Sbjct: 361 GALRANELNQPRDELRSTVTQIKNDVHIQLEQTKRTNKNVHNISKELRKLHREGINNATN 420

Query: 258 ALMVVASLTATMAFQAGVNPPHGPWQDTSFSSSQGHATAHRYTCILFFNTTGFLASLSII 317
           ++ VVA L AT+AF A    P G   D S +   G A+   +     FN      SL+++
Sbjct: 421 SVTVVAVLFATVAFAAIFTVPGGDNNDGS-AVVVGRAS---FKIFFIFNALALFTSLAVV 476

Query: 318 LL 319
           ++
Sbjct: 477 VV 478

Arabidopsis thaliana (taxid: 3702)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 53.9 bits (128), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 69/130 (53%), Gaps = 6/130 (4%)

Query: 68  DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRIDVLEELFRTR 127
           + N  +ALH+AS++ HV+ +  LLQ       A     + LH+A++ G+ +V++ L  T 
Sbjct: 54  NQNGLNALHLASKEGHVEVVSELLQREANVDAATKKGNTALHIASLAGQAEVVKVLV-TN 112

Query: 128 PLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLC 187
               +A    G T L++  + N L+ ++FLLDN    Q L  ED +    T LAVA++  
Sbjct: 113 GANVNAQSQNGFTPLYMAAQENHLEVVRFLLDNGAS-QSLATEDGF----TPLAVALQQG 167

Query: 188 FQNLVELVEE 197
              +V L+ E
Sbjct: 168 HDQVVSLLLE 177

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|Q9XZC0|LCTA_LATTR Alpha-latrocrustotoxin-Lt1a (Fragment) OS=Latrodectus tredecimguttatus PE=2 SV=2

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 75/146 (51%), Gaps = 10/146 (6%)

Query: 41  LHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQ----VNPA 96
           +HA+A  G+ D    +  +   L    D N ++ LHIAS++ + D +K LL+    VN  
Sbjct: 499 IHASATAGNDDVARLLLAKNNGLLNVPDKNGYTPLHIASERKNNDFVKFLLEKGADVN-V 557

Query: 97  WCFAGDLDGSPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKF 156
             FA +L  +PLHLAA +    +++ L   R +  +A    G T LHL +  N   A + 
Sbjct: 558 RTFANEL--TPLHLAARQDFTIIVKTLMEKRGIDVNAKERAGFTPLHLSITSNSR-AART 614

Query: 157 LLDNMDDPQFLNAEDDYGMTITQLAV 182
           L++  + P  +N + + G+T   LAV
Sbjct: 615 LIN--ETPAGINIKSNSGLTPLHLAV 638

Crustacean-selective presynaptic neurotoxin that induces neurotransmitter exocytosis. Binds to neurexin-1-alpha (NRXN1), latrophilin-1 (LPHN1), and receptor-type tyrosine-protein phosphatase S (PTPRS), and induces neurotransmitter exocytosis through two calcium-dependent mechanisms (membrane pore formation and signaling via latrophilin) and a yet to be defined calcium-independent mechanism.

Latrodectus tredecimguttatus (taxid: 6925)

>sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2

 Score = 52.0 bits (123), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 60/131 (45%), Gaps = 10/131 (7%)

Query: 38  EFPLHAAALLGHVDFEGEIRRQ--KPELAGELDSNQFSALHIASQKVHVDKIKALLQVNP 95
           + PLH AA +GH      +      P LA    +   + LH A+++ HVD   ALL+   
Sbjct: 467 QTPLHCAARIGHTGMVKLLLENGASPNLA---TTAGHTPLHTAAREGHVDTALALLEKEA 523

Query: 96  AWCFAGDLDGSPLHLAAMKGRIDVLEELFR--TRPLAASATMIWGETILHLCVKHNQLDA 153
           +         +PLH+AA  G++ + E L      P AA      G T LH+ V HN LD 
Sbjct: 524 SQACMTKKGFTPLHVAAKYGKVRLAELLLEHDAHPNAAGKN---GLTPLHVAVHHNNLDI 580

Query: 154 LKFLLDNMDDP 164
           +K LL     P
Sbjct: 581 VKLLLPRGGSP 591

Attaches integral membrane proteins to cytoskeletal elements; binds to the erythrocyte membrane protein band 4.2, to Na-K ATPase, to the lymphocyte membrane protein GP85, and to the cytoskeletal proteins fodrin, tubulin, vimentin and desmin. Erythrocyte ankyrins also link spectrin (beta chain) to the cytoplasmic domain of the erythrocytes anion exchange protein; they retain most or all of these binding functions. In skeletal muscle, isoform Mu7 together with obscurin may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Mus musculus (taxid: 10090)

>sp|Q63369|NFKB1_RAT Nuclear factor NF-kappa-B p105 subunit (Fragment) OS=Rattus norvegicus GN=Nfkb1 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 61/135 (45%), Gaps = 13/135 (9%)

Query: 68  DSNQFSALHIASQKVHVDKIKALLQVNPAWC------FAGDLDGSPLHLAAMKGRIDVLE 121
           D N  S LH+A   +H   ++ LL+V              DL  +PLHLA +  + DV+E
Sbjct: 87  DENGDSVLHLAIIHLHAQLVRDLLEVTSGSISDDIINMRNDLYQTPLHLAVITKQEDVVE 146

Query: 122 ELFRTRPLAASATMI--WGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQ 179
           +L R   + A  +++  WG ++LHL  K      L  LL N      +N  +  G+    
Sbjct: 147 DLLR---VGADLSLLDRWGNSVLHLAAKEGHDKILGVLLKNSKAALLINHPNGEGLNAIH 203

Query: 180 LAVAVK--LCFQNLV 192
           +AV      C Q LV
Sbjct: 204 IAVMSNSLSCLQLLV 218

NF-kappa-B is a pleiotropic transcription factor which is present in almost all cell types and is involved in many biological processed such as inflammation, immunity, differentiation, cell growth, tumorigenesis and apoptosis. NF-kappa-B is a homo- or heterodimeric complex formed by the Rel-like domain-containing proteins RELA/p65, RELB, NFKB1/p105, NFKB1/p50, REL and NFKB2/p52 and the heterodimeric p65-p50 complex appears to be most abundant one. The dimers bind at kappa-B sites in the DNA of their target genes and the individual dimers have distinct preferences for different kappa-B sites that they can bind with distinguishable affinity and specificity. Different dimer combinations act as transcriptional activators or repressors, respectively. NF-kappa-B is controlled by various mechanisms of post-translational modification and subcellular compartmentalization as well as by interactions with other cofactors or corepressors. NF-kappa-B complexes are held in the cytoplasm in an inactive state complexed with members of the NF-kappa-B inhibitor (I-kappa-B) family. In a conventional activation pathway, I-kappa-B is phosphorylated by I-kappa-B kinases (IKKs) in response to different activators, subsequently degraded thus liberating the active NF-kappa-B complex which translocates to the nucleus. NF-kappa-B heterodimeric p65-p50 and RelB-p50 complexes are transcriptional activators. The NF-kappa-B p50-p50 homodimer is a transcriptional repressor, but can act as a transcriptional activator when associated with BCL3. NFKB1 appears to have dual functions such as cytoplasmic retention of attached NF-kappa-B proteins by p105 and generation of p50 by a cotranslational processing. The proteasome-mediated process ensures the production of both p50 and p105 and preserves their independent function, although processing of NFKB1/p105 also appears to occur post-translationally. p50 binds to the kappa-B consensus sequence 5'-GGRNNYYCC-3', located in the enhancer region of genes involved in immune response and acute phase reactions. Plays a role in the regulation of apoptosis. Isoform 5, isoform 6 and isoform 7 act as inhibitors of transactivation of p50 NF-kappa-B subunit, probably by sequestering it in the cytoplasm. Isoform 3 (p98) (but not p84 or p105) acts as a transactivator of NF-kappa-B-regulated gene expression. In a complex with MAP3K8, NFKB1/p105 represses MAP3K8-induced MAPK signaling; active MAP3K8 is released by proteasome-dependent degradation of NFKB1/p105.

Rattus norvegicus (taxid: 10116)

>sp|A5PMU4|ANS1B_DANRE Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Danio rerio GN=anks1b PE=3 SV=1

 Score = 51.2 bits (121), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 102/238 (42%), Gaps = 30/238 (12%)

Query: 5   LYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELA 64
           L+ A+L G    +L+LLQ +          C   FPLH AA  G VD    +    P  +
Sbjct: 62  LHHASLNGHRDVVLKLLQFEASTNVSDSKGC---FPLHLAAWRGDVDIVQILIHHGPSHS 118

Query: 65  --GELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRIDVLEE 122
              E +  + +ALH A+Q  H + ++ LLQ             +PL LAA+ GR+ V+  
Sbjct: 119 RVNEQNLEKETALHCAAQYGHSEVVRVLLQELTDPSMRNSRGETPLDLAALYGRLQVVRM 178

Query: 123 LFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLD-NMDDPQFLNAEDDYGMTITQLA 181
           L    P   S       T LHL  ++     ++ LL+ +MD    +N + + G  + + A
Sbjct: 179 LLTAHPNLMSCN-TRKHTPLHLAARNGHYATVQVLLEADMD----VNTQTEKGSALHEAA 233

Query: 182 VAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDK 239
           +  K+   ++V+L+ +                + I+ N  +  G  ALD L +    K
Sbjct: 234 LFGKM---DVVQLLLD----------------SGIDANIRDCQGRTALDILREHPSQK 272

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	323
343887311	473	ankyrin repeat family protein [Citrus un	0.934	0.638	0.435	3e-69
343887299	477	ankyrin repeat family protein [Citrus un	0.938	0.635	0.444	5e-69
343887300	469	ankyrin repeat family protein [Citrus un	0.938	0.646	0.424	2e-67
359475964	491	PREDICTED: ankyrin repeat-containing pro	0.947	0.623	0.465	2e-65
343887301	470	Ankyrin repeat family protein [Citrus un	0.913	0.627	0.410	9e-61
359475962	486	PREDICTED: ankyrin repeat-containing pro	0.839	0.557	0.436	3e-59
224088778	491	predicted protein [Populus trichocarpa]	0.947	0.623	0.407	2e-58
224092119	471	predicted protein [Populus trichocarpa]	0.947	0.649	0.391	6e-57
359484287	355	PREDICTED: LOW QUALITY PROTEIN: ankyrin	0.925	0.842	0.376	1e-53
449453053	476	PREDICTED: ankyrin repeat-containing pro	0.842	0.571	0.375	1e-49

>gi|343887311|dbj|BAK61857.1| ankyrin repeat family protein [Citrus unshiu]

 Score =  268 bits (685), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 164/377 (43%), Positives = 208/377 (55%), Gaps = 75/377 (19%)

Query: 1   MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQK 60
           M+  +YEAA+ G   +L+ LLQ+D L++ R  V+C +E PLH A++LGHVDF  EI  QK
Sbjct: 1   MERRIYEAAVDGSVASLIHLLQEDALVLDRFMVSCHAETPLHIASMLGHVDFVQEIVSQK 60

Query: 61  PELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDV 119
           PELAGELDS + S LH+AS K ++  +K L+ VNP  C+  D DG +PLH+AA+KG ++V
Sbjct: 61  PELAGELDSRKASPLHVASAKGYLVIVKKLVSVNPEMCYVRDRDGRNPLHVAAIKGHVNV 120

Query: 120 LEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQ 179
           L EL + RP AA   M  GETILH CV++NQL+++KFLLD + D +F+N +++ G TI  
Sbjct: 121 LRELVQVRPQAARMLMDRGETILHACVRYNQLESMKFLLDILSDREFVNYKNNDGNTILH 180

Query: 180 LAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDK 239
           LAVA                  K    I+ LTT T IEVNALNANG  ALD L Q K D+
Sbjct: 181 LAVA-----------------DKQTEAIKVLTTSTTIEVNALNANGLAALDILPQIKGDE 223

Query: 240 KDWEI------------------------------------------EDWKMIGWKKMRN 257
           KD EI                                           DW     +K R+
Sbjct: 224 KDSEIIELLGRASAISARDEGKKKKKKKTKTPSKSHVNNDNLARRDEYDW----LRKKRS 279

Query: 258 ALMVVASLTATMAFQAGVNPPHGPWQD-----------TSFSSSQGHATAHRYTCILFFN 306
            LMVVASL ATMAFQ G NPP G WQD            + SS     +   Y   L  N
Sbjct: 280 TLMVVASLIATMAFQVGANPPGGLWQDNFVGDEKTPAHNAGSSILADLSPEAYGHFLTSN 339

Query: 307 TTGFLASLSIILLLSIG 323
           +  F+ASLSIILLL  G
Sbjct: 340 SIAFVASLSIILLLVSG 356

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343887299|dbj|BAK61845.1| ankyrin repeat family protein [Citrus unshiu]

 Score =  267 bits (683), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 168/378 (44%), Positives = 212/378 (56%), Gaps = 75/378 (19%)

Query: 1   MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQK 60
           M+S+LYEA+++G   TLL+LL+QD LI+ +V  N   E PLH AAL GH+ F  EI R+ 
Sbjct: 4   MESLLYEASVEGNITTLLQLLEQDPLILDKVVANRHHETPLHVAALRGHLHFAKEILRRT 63

Query: 61  PELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDV 119
           P LAGELDS   S LH+A+QK +VD +K LLQVNP  C A D+DG +PLH+AAMKGRI V
Sbjct: 64  PVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQV 123

Query: 120 LEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQ 179
           L ELFR RP AA +T IW ET+LHLCVKHNQ +ALKFL+  M+DP FLNA+DDYGM+I  
Sbjct: 124 LVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILH 183

Query: 180 LAVAVK-------LCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALN-------ANG 225
           LAVA K       L     VE+     H   GY    +  ++  ++  L+       A  
Sbjct: 184 LAVADKQIETINYLLVNTRVEVNALNTH---GYTALDILAQSRRDIKDLDIADSLRGAGA 240

Query: 226 FMALD----------TLAQSKRDKK-------------------------DWEIEDWKMI 250
           F A++          ++ +S R+ +                           + EDW   
Sbjct: 241 FKAIEIQSSLNRNSTSIGRSVRNNRAVSNSIIPHDQLKALPQECLINLQQKNKTEDW--- 297

Query: 251 GWKKMRNALMVVASLTATMAFQAGVNPPHGPWQDT---SFSSSQGHATAH---------- 297
              + R+ALMVVASL ATMAFQAGVNPP G WQD        SQ ++TA           
Sbjct: 298 -LTRKRDALMVVASLIATMAFQAGVNPPGGVWQDDFPGPGDGSQENSTAEAHQAGTAIIA 356

Query: 298 -----RYTCILFFNTTGF 310
                RY   L FNT GF
Sbjct: 357 YKYRSRYANYLAFNTAGF 374

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343887300|dbj|BAK61846.1| ankyrin repeat family protein [Citrus unshiu]

 Score =  261 bits (668), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 164/386 (42%), Positives = 208/386 (53%), Gaps = 83/386 (21%)

Query: 1   MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQK 60
           M+  +YEAA++G   +LL+LLQ+D L++ R  V+C SE PLH A++LGH  F  EI  +K
Sbjct: 1   MERRVYEAAVEGSVESLLKLLQEDALLLDRSMVSCYSETPLHIASMLGHESFVREILSRK 60

Query: 61  PELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDV 119
           PELAGELDS + SALH A+ K H+  +  LL VNP  C A D DG +PLH+AA+KG ++V
Sbjct: 61  PELAGELDSRRSSALHFAAAKGHLGIVLKLLSVNPKMCCACDRDGKNPLHVAAIKGHVNV 120

Query: 120 LEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQ 179
           L EL + RP A    M  GETILH CV +NQL+ LK L++ ++D +F+N++DD G TI  
Sbjct: 121 LRELVQVRPKACRILMDRGETILHACVNYNQLECLKLLVETLNDHEFVNSKDDDGNTILH 180

Query: 180 LAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDK 239
           LAV                   K    ++FLT  T IEVNA+NANGF ALD LAQ K D 
Sbjct: 181 LAVI-----------------DKQVEAVKFLTGSTTIEVNAVNANGFTALDILAQRKLDM 223

Query: 240 KDWEIEDWKMIGWK---------------------------------------------- 253
                E  +  G +                                              
Sbjct: 224 NSTIGELLRCAGARSLKETREPASGTTKTRTGSIITSHSGDPSNQGRERPEKARKKQEDK 283

Query: 254 ---KMRNALMVVASLTATMAFQAGVNPPHGPWQDTSFSSSQGHATAHRYTCILF------ 304
              K RN LMVVASL ATMAFQAG+NPP G WQD    S +  A+ H+  C +       
Sbjct: 284 WSEKKRNTLMVVASLIATMAFQAGLNPPGGVWQD---DSPKNDASRHQAGCSVMLTQDEI 340

Query: 305 -------FNTTGFLASLSIILLLSIG 323
                  FNTTGF+ASLSIILL   G
Sbjct: 341 SYNLFFGFNTTGFVASLSIILLFISG 366

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475964|ref|XP_002279612.2| PREDICTED: ankyrin repeat-containing protein At2g01680-like [Vitis vinifera]

 Score =  255 bits (652), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 175/376 (46%), Positives = 213/376 (56%), Gaps = 70/376 (18%)

Query: 1   MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQK 60
           M+ MLYEAA++G   +L +LLQQD+LI+ RV V+C++E PLH AA+LGH DF  EI   K
Sbjct: 1   MERMLYEAAMEGSVASLQQLLQQDRLILDRVIVDCITETPLHVAAMLGHTDFVKEILCLK 60

Query: 61  PELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDV 119
           PELA ELDS  FS LH+AS K + + +KA L V+P  CFA D  G +PLHLAAMKGR DV
Sbjct: 61  PELARELDSRGFSPLHLASAKGYTEVVKAFLLVDPDMCFACDRYGRNPLHLAAMKGRFDV 120

Query: 120 LEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQ-FLNAEDDYGMTIT 178
           L+EL R RP AA A    GETILHLCVK NQL+ALKFL++ MDD    +N  D+ G TI 
Sbjct: 121 LKELVRARPHAARARAERGETILHLCVKQNQLEALKFLVETMDDHNDLVNTRDNNGFTIL 180

Query: 179 QLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRD 238
            LAVA                  K    + +L + T +EVNALN +G  ALD L    RD
Sbjct: 181 HLAVA-----------------DKQIETVNYLLSNTRVEVNALNTSGLTALDILVHGLRD 223

Query: 239 KKDWEI-EDWKMIG----------------------------------W-KKMRNALMVV 262
             D +I E ++  G                                  W  + R+ALMVV
Sbjct: 224 VGDLDIGEAFRGTGAMRAMNTHLPNHHPQVLQLTSEGDRSMKSKGKEHWLTRKRDALMVV 283

Query: 263 ASLTATMAFQAGVNPPHGPWQDTSFSSSQ------GHATA---------HRYTCILFFNT 307
           ASL ATMAFQA VNPP G WQD S  +SQ       HA             Y   L +NT
Sbjct: 284 ASLIATMAFQAAVNPPGGAWQDNSTQNSQDTQAGKSHAAGKAIMADSNEEYYRLYLSYNT 343

Query: 308 TGFLASLSIILLLSIG 323
           TGF++SLSIIL+L  G
Sbjct: 344 TGFISSLSIILMLITG 359

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343887301|dbj|BAK61847.1| Ankyrin repeat family protein [Citrus unshiu]

 Score =  239 bits (611), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 153/373 (41%), Positives = 203/373 (54%), Gaps = 78/373 (20%)

Query: 1   MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQK 60
           M+  +YEAA++G   +LL+LLQ+D L++ R  V+C SE PLH A++LGH +F  EI  +K
Sbjct: 1   MERRVYEAAVEGSVESLLKLLQEDALLLDRSMVSCYSETPLHVASMLGHENFVREILSRK 60

Query: 61  PELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDV 119
           PELAGELDS + SALH+A+ K H+  +  L+ VNP  C A D DG +PLH+AA+KG ++V
Sbjct: 61  PELAGELDSRRSSALHLAAAKGHLGIVLKLVSVNPKMCCACDRDGKNPLHVAAIKGHVNV 120

Query: 120 LEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQ 179
           L EL + RP A    M  GETILH CV +NQL+ LK L++ ++D +F+N++DD G TI  
Sbjct: 121 LRELVQVRPKACRILMDRGETILHACVNYNQLECLKLLVETLNDHEFVNSKDDDGNTILH 180

Query: 180 LAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTR-TMIEVNALNANGFMALDTLAQSK-- 236
           LAV                   K    I+FLT   T +EVNA+NANGF ALD LA+ K  
Sbjct: 181 LAVI-----------------DKQVETIKFLTDSCTTLEVNAVNANGFTALDILARRKLD 223

Query: 237 --------------RDKKDW--------------------------------EIEDWKMI 250
                         R +K+                                 ++   +  
Sbjct: 224 VNWTIGELLRCAGARSQKETREPSPAITQTPTGSIITSHSDDPSNQGRERPEKVRKKQED 283

Query: 251 GW-KKMRNALMVVASLTATMAFQAGVNPPHGPWQDTSFSSSQGHATAHR----------Y 299
            W +K RNALMVVASL ATMAFQA +NPP G WQD S ++      A            Y
Sbjct: 284 EWSEKKRNALMVVASLIATMAFQAALNPPGGVWQDDSQANDTSPHDAGSSIMLTNVESVY 343

Query: 300 TCILFFNTTGFLA 312
                FNTTGF+A
Sbjct: 344 YLFFGFNTTGFVA 356

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475962|ref|XP_002279591.2| PREDICTED: ankyrin repeat-containing protein At2g01680-like [Vitis vinifera]

 Score =  235 bits (599), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 149/341 (43%), Positives = 187/341 (54%), Gaps = 70/341 (20%)

Query: 4   MLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPEL 63
           MLYEAA +G   +L ELL +D LII RV +N  +E PLH AALLGH DF  EI  QKPEL
Sbjct: 1   MLYEAAAQGSVTSLYELLLKDPLIIDRVMLN-YTETPLHIAALLGHADFAKEILLQKPEL 59

Query: 64  AGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEE 122
           A ELD  + S LH+A+ K +++ +K LL VNP  C A D DG +P+HLAAM+G + VL+E
Sbjct: 60  AAELDYRRSSPLHLAAAKGYIEIVKELLFVNPEMCLACDRDGRNPVHLAAMRGHVHVLKE 119

Query: 123 LFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
           L + +P A  A +  GETILHLCVKHNQL+ALK L++  D  + ++A+DD G TI  LAV
Sbjct: 120 LVQAKPHATWAALPRGETILHLCVKHNQLEALKLLVETADAHEIMSAKDDNGFTILHLAV 179

Query: 183 AVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDKKDW 242
           A                  K    I +L + T IEVNA+N NG  A D LAQS+RD +D 
Sbjct: 180 A-----------------DKQLETINYLLSSTSIEVNAVNLNGCTASDILAQSRRDVQDM 222

Query: 243 EIED-WKMIGWKKMRN-------------------------------------------- 257
           EI +  + +G  K +N                                            
Sbjct: 223 EISELLRHVGAAKAKNISFSAYEFGSSRTRGMSSDADDQNRVPCPIGKNCNEFNKKKDDW 282

Query: 258 ------ALMVVASLTATMAFQAGVNPPHGPWQDTSFSSSQG 292
                 ALMVVASL ATMAFQAGV+PP   W D S    +G
Sbjct: 283 LDKQQSALMVVASLIATMAFQAGVSPPGDVWGDNSKYDPEG 323

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088778|ref|XP_002308536.1| predicted protein [Populus trichocarpa] gi|222854512|gb|EEE92059.1| predicted protein [Populus trichocarpa]

 Score =  232 bits (592), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 152/373 (40%), Positives = 211/373 (56%), Gaps = 67/373 (17%)

Query: 1   MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQK 60
           ++  L +AA++G   +LL LLQ+D+L + R  V C +E PLH AA+LGH++F  EI  +K
Sbjct: 42  VQRKLLDAAVEGNVTSLLILLQEDKLFLDRCAVTCPAETPLHIAAMLGHLEFTREILWRK 101

Query: 61  PELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDV 119
           P+L  ELD ++ S LH+A+   H++ ++ LL V+   C   D +  +PLH+A +KGRIDV
Sbjct: 102 PDLVNELDLHRSSPLHLATANGHLEVVRVLLLVDADLCLVKDRNRWNPLHVAVIKGRIDV 161

Query: 120 LEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLD-NMDDPQFLNAEDDYGMTIT 178
           L+EL + +P A       GETILHLCVKH QL+ALKFL+   + D +F+N+EDD G TI 
Sbjct: 162 LKELVQAKPDAIRTRGQRGETILHLCVKHYQLEALKFLVGITIADTEFVNSEDDDGFTIL 221

Query: 179 QLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALD-TLAQSKR 237
            LAVA +                    VI +L + + I+VNALNANGF ALD  LAQ +R
Sbjct: 222 HLAVADREI-----------------EVINYLISESPIQVNALNANGFTALDIVLAQGRR 264

Query: 238 DKKDWEIED------------------------------------WKMIGW-KKMRNALM 260
           + KD +I++                                    W+   W ++ RNALM
Sbjct: 265 NIKDIDIQNTLREGGAISSKDMPSTMHGLDAIRPNNSTTLNERNCWRKKNWLEERRNALM 324

Query: 261 VVASLTATMAFQAGVNPPHGPWQ-DTSFSSSQGHATAHR---------YTCILFFNTTGF 310
           VVASL ATMAFQAG++PP+G WQ D     SQ H              +   + +NTT F
Sbjct: 325 VVASLIATMAFQAGISPPNGNWQEDRQQPPSQSHEAGRSIMADKMPDDFAFFVGYNTTSF 384

Query: 311 LASLSIILLLSIG 323
           LAS+S+I+LL  G
Sbjct: 385 LASISVIILLISG 397

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092119|ref|XP_002309480.1| predicted protein [Populus trichocarpa] gi|222855456|gb|EEE93003.1| predicted protein [Populus trichocarpa]

 Score =  227 bits (578), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 150/383 (39%), Positives = 211/383 (55%), Gaps = 77/383 (20%)

Query: 1   MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQK 60
           M+  L EAA++G    LL+LL++D+L++     +C +E PLH +A+LGH++F  +I  +K
Sbjct: 15  MQRRLKEAAVEGNVIALLKLLEEDKLVLDGCATDCFTETPLHISAMLGHLEFTRKILCRK 74

Query: 61  PELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDV 119
           PE A ELD    S LH+A+   H++ ++ALL VNP  CFA + DG +PLH+A +KGR+DV
Sbjct: 75  PEFAKELDFLGSSPLHLATANGHLEVVRALLSVNPDMCFAQNRDGRNPLHIAVIKGRVDV 134

Query: 120 LEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQ 179
           L+EL + +P A       GET+LHLCVKH QL+ALK L++ + D  F+N++D+ G T+  
Sbjct: 135 LKELVQNKPEAVLHRTARGETVLHLCVKHFQLEALKLLVETIKDYGFINSKDEDGSTVLH 194

Query: 180 LAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALD-TLAQSKRD 238
           LAVA                  K   +I FL  +T IEVNA+NA+GF  LD  LAQ +R+
Sbjct: 195 LAVA-----------------DKEIEIISFLIMKTEIEVNAINASGFTVLDIALAQGRRN 237

Query: 239 KKDWEIED-----------------------------------------------WKMIG 251
            KD +++D                                                +  G
Sbjct: 238 WKDVDVQDSLHQVGASSAKDLSSTMHRLEAVGAVNLRSEDHFTSLQSRLKRKYQRRQSYG 297

Query: 252 WKKMRNALMVVASLTATMAFQAGVNPPHGPWQ-DTSFSSSQGHATAHR----------YT 300
             + RNALM+VASL ATMAFQAG++PP G WQ D+  ++S  H  A R          Y 
Sbjct: 298 LGEKRNALMIVASLIATMAFQAGISPPGGLWQEDSQGATSNEHHEAGRSIMADKLPAAYN 357

Query: 301 CILFFNTTGFLASLSIILLLSIG 323
             +  N+  FLASLS+ILLL  G
Sbjct: 358 KFVMHNSIAFLASLSVILLLISG 380

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484287|ref|XP_003633093.1| PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat-containing protein At2g01680-like [Vitis vinifera]

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 124/329 (37%), Positives = 178/329 (54%), Gaps = 30/329 (9%)

Query: 5   LYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELA 64
           LYEA+  G   +L +L+ +D L + R  V C  E PLH AA+LGH+DF   +   KP++A
Sbjct: 16  LYEASANGSVNSLKQLMAEDPLALARASVTCFDETPLHIAAMLGHLDFAKALVTHKPDMA 75

Query: 65  GELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEEL 123
             +D    S LH+AS  V+++ +  ++ +N   C   D DG +PLHLA MKG ++V  EL
Sbjct: 76  MAIDLQGRSPLHLASANVYIEIVXHVMSLNSNACLICDEDGRTPLHLAVMKGHVEVTREL 135

Query: 124 FRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVA 183
            R RP A    +  GETILH  V+HN+L ALK L++++ + +F+NA DDYG T+   A  
Sbjct: 136 VRARPEATGHKLDHGETILHSAVRHNRLGALKRLVESVREAEFINARDDYGNTVLHTATT 195

Query: 184 VKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDKKDWE 243
           +KL                    +R+L   +M+EVNA+N +G   LD +    RD K  E
Sbjct: 196 LKLL-----------------ETVRYLLNGSMVEVNAVNESGLTTLDIIEHMPRDLKSME 238

Query: 244 I-EDWKMIGWKKMRN------ALMVVASLTATMAFQAGVNPPHGPWQD-----TSFSSSQ 291
           I E    +G  + RN      +LM+ A + A MA QAG+NPP G WQD      + +S  
Sbjct: 239 IRESLSKVGALRDRNVPANGESLMITAGVIAAMASQAGLNPPGGIWQDDKSGHVAGTSIM 298

Query: 292 GHATAHRYTCILFFNTTGFLASLSIILLL 320
           G      Y     ++T  F+ S+S I LL
Sbjct: 299 GDYYPAGYREFWIYDTVAFVISVSTIFLL 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453053|ref|XP_004144273.1| PREDICTED: ankyrin repeat-containing protein At2g01680-like [Cucumis sativus]

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 132/352 (37%), Positives = 182/352 (51%), Gaps = 80/352 (22%)

Query: 33  VNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQ 92
           +N   E PLH A+LLGH+ F  E+ ++ P LA ELDS   SALH A+ +  +D +K L++
Sbjct: 38  LNDFKETPLHVASLLGHLTFVHELLKRIPRLAKELDSRGCSALHFAAAEGFLDIVKILVR 97

Query: 93  VNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQL 151
           V+P  C   + DG +P+HLAAM+GRIDVL EL R RP AA   +  G T+LHLCVK+NQL
Sbjct: 98  VDPDMCSICNQDGMNPIHLAAMRGRIDVLAELVRVRPTAARTAVDGGGTVLHLCVKYNQL 157

Query: 152 DALKFLLDNMD----DPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVI 207
           +ALK L++ +     D  F+N++D+YG TI  LAV+ K                +   V 
Sbjct: 158 EALKMLIETIGVKDRDNGFINSQDNYGFTILHLAVSNK----------------QLQTVK 201

Query: 208 RFLTTRTMIEVNALNANGFMALDTLAQSKRDKKDWEIE---------------------- 245
             +   T I+VNA  +NGF ALD L+QS RD KD +I                       
Sbjct: 202 YLINNNTKIQVNAKTSNGFTALDILSQSHRDLKDMDIAETLTAAKAVRTTNKKPPPPPPS 261

Query: 246 ------------------------DW----KMIGWKKMRNALMVVASLTATMAFQAGVNP 277
                                   DW    +   W   + +LMVVASL ATMAFQAG++P
Sbjct: 262 SSNCVEKNKRTGLRWAFSALFHGGDWWFPNETSEWLMKQESLMVVASLIATMAFQAGLSP 321

Query: 278 PHGPWQD------TSFSSSQGHATAHRYTCILFFNTTGFLASLSIILLLSIG 323
           P G W D      TS  +++   T  +Y   L  N+ GF+ S   I+++ +G
Sbjct: 322 PGGVWGDDSPGAGTSVMAAKAEETYQKY---LVANSIGFMTSFIAIVMILVG 370

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	323
TAIR|locus:2176252	442	AT5G51160 "AT5G51160" [Arabido	0.563	0.411	0.313	3.3e-21
TAIR|locus:2009046	573	AT1G34050 "AT1G34050" [Arabido	0.492	0.277	0.292	1.5e-16
TAIR|locus:2012557	436	AT1G14500 "AT1G14500" [Arabido	0.600	0.444	0.274	3.6e-13
TAIR|locus:2172089	426	ANK "ankyrin" [Arabidopsis tha	0.647	0.490	0.286	1.4e-12
TAIR|locus:2012873	578	AT1G10340 "AT1G10340" [Arabido	0.541	0.302	0.266	1.6e-12
TAIR|locus:2170081	535	AT5G50140 "AT5G50140" [Arabido	0.473	0.285	0.263	4.5e-12
TAIR|locus:2132711	445	AT4G10720 "AT4G10720" [Arabido	0.560	0.406	0.266	1e-11
TAIR|locus:2157553	598	AT5G54710 "AT5G54710" [Arabido	0.383	0.207	0.281	1.2e-11
TAIR|locus:2026489	543	AT1G07710 "AT1G07710" [Arabido	0.396	0.235	0.346	1.4e-10
TAIR|locus:2012532	441	AT1G14480 "AT1G14480" [Arabido	0.365	0.267	0.285	1.5e-10

TAIR|locus:2176252 AT5G51160 "AT5G51160" [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 3.3e-21, Sum P(2) = 3.3e-21
 Identities = 63/201 (31%), Positives = 105/201 (52%)

Query:    54 GEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAA 112
             G+I RQ+     +LD N FS LH A+    V+ ++A L V    C   D DG +PLH+A 
Sbjct:    32 GKILRQRSVF--DLDKNGFSPLHAAAAAGQVETVRATLGVEKKLCRLKDRDGKTPLHVAT 89

Query:   113 MKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDP-QF--LNA 169
             M+G+IDV+ E+  +         + G+T LHL V H +++A+  +++ + +  +F  LN 
Sbjct:    90 MRGKIDVIREIVASCVDCLEDETVQGQTALHLAVLHLEIEAVIAIVELITETNRFDVLNK 149

Query:   170 EDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMAL 229
             +D+ G T   LA   K   + ++E++ +    +         +R+  EVNA+N  G  A+
Sbjct:   150 KDEQGNTALHLATWRKN--RQVIEVLVQAIPEE---------SRSF-EVNAMNKMGLSAM 197

Query:   230 DTLAQSKRDKKDWEIEDWKMI 250
             D L     +  D EI + K+I
Sbjct:   198 DLLVMFPSEAGDREIYE-KLI 217

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006826 "iron ion transport" evidence=RCA

GO:0010043 "response to zinc ion" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2009046 AT1G34050 "AT1G34050" [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 1.5e-16, Sum P(3) = 1.5e-16
 Identities = 48/164 (29%), Positives = 79/164 (48%)

Query:    36 LSEFPLHAAALLG-HVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVN 94
             + EF  +A  +LG + D    +  + P+LA   D    + LH A    +++  K LL+++
Sbjct:   150 IGEF--YATFVLGEYTDIARRMLERFPKLAWNADGELSTPLHHACNANNLEITKMLLEID 207

Query:    95 PAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDA 153
              +     + DG +PLHLAAMK  I +L+E     P          ET+ HL  +H  + A
Sbjct:   208 ESLAERVNKDGFTPLHLAAMKCSIPILKEFSDKAPRYFDILTPAKETVFHLAAEHKNILA 267

Query:   154 LKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEE 197
               F+ ++ D    L+  D YG T+   AV +  C+  +V +  E
Sbjct:   268 FYFMAESPDRNNLLHQVDRYGNTVLHTAV-MSSCYSVIVSITYE 310

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2012557 AT1G14500 "AT1G14500" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
 Identities = 58/211 (27%), Positives = 101/211 (47%)

Query:    40 PLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCF 99
             PLH AA   ++ F  E+   KP  A +L+++ +S LH+A +K H + I  LL  +P    
Sbjct:    40 PLHVAAASDNIPFAMEMLNLKPSFARKLNTSGYSPLHLAVEKDHREFITWLLWRDPGLVR 99

Query:   100 AGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFL- 157
                 +G +P HL A++G ++++ E  +  P+      + G   LHL V +++ + L+ L 
Sbjct:   100 VKGREGITPFHLLAIRGDVNLVAECLKYCPVCIQDVSVNGHNALHLAVMNDRFEILQVLT 159

Query:   158 --LDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTM 215
               L  M      + E D+ +    LA    L   +L    E++        ++ L    +
Sbjct:   160 GWLQRMSQKDSASTESDF-LNRKDLAHNTPL---HLAAYKEDH------QAVKLLLQCQL 209

Query:   216 IEVNALNANGFMALDTL---AQSKRDKKDWE 243
             +++N +NA+G   LD L    QS+   KD E
Sbjct:   210 VKLNEVNADGLTFLDILRNNGQSRDLDKDLE 240

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2172089 ANK "ankyrin" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
 Identities = 68/237 (28%), Positives = 116/237 (48%)

Query:    27 IIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDK 86
             I+ +V V  +   PLH A+  G +D   E+   KP  A +L+    S LH+A +   V+ 
Sbjct:    27 ILQKVDVLPIIHTPLHEASSAGKLDLAMELMILKPSFAKKLNEYGLSPLHLAVENDQVEL 86

Query:    87 IKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLC 145
                L++V+P+        G +PLHL A KG +D+L +     P +     + GETILH+ 
Sbjct:    87 ALELVKVDPSLVRIRGRGGMTPLHLVAKKGDVDLLTDFLLACPESIKDVNVNGETILHIT 146

Query:   146 VKHNQLDALKFL---LDNMDDPQ--F---LNAEDDYGMTITQLAVAVKLCFQNLVELVEE 197
             + +++ + LK L   +  M D    F   LN  D  G T+  LA      ++N  ++V++
Sbjct:   147 IMNDKYEQLKVLTGWMQKMRDSDDVFIDVLNRRDRGGNTVLHLAA-----YENNDKVVKQ 201

Query:   198 YCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDKKDWEIEDW-KMIGWK 253
                     +++ L+    ++ N  N +G  ALD L +++    + EIE+  +M G K
Sbjct:   202 --------LVKCLS----LDRNIQNKSGMTALDVL-RARGSHMNKEIEEIIQMSGGK 245

GO:0005886 "plasma membrane" evidence=ISM

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0045087 "innate immune response" evidence=IMP

TAIR|locus:2012873 AT1G10340 "AT1G10340" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
 Identities = 53/199 (26%), Positives = 93/199 (46%)

Query:    48 GHVDFEGEIRRQKPELAGEL-----DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGD 102
             G     G I  + P+LA E      D +Q + LH A  K   +    LL ++     A +
Sbjct:   143 GSTSIVGTILERFPDLAREEAWVVEDGSQSTLLHHACDKGDFELTTILLGLDQGLEEALN 202

Query:   103 LDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNM 161
              +G SPLHLA ++G + +LEE     PL+ S+     ET+ HL  ++  +DA  F+ +++
Sbjct:   203 PNGLSPLHLAVLRGSVVILEEFLDKVPLSFSSITPSKETVFHLAARNKNMDAFVFMAESL 262

Query:   162 D-DPQFLNAE-DDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVN 219
               + Q L  + D+ G T+  +A +V   F                 +IR++  + ++++ 
Sbjct:   263 GINSQILLQQTDESGNTVLHIAASVS--FD--------------APLIRYIVGKNIVDIT 306

Query:   220 ALNANGFMALDTLAQSKRD 238
             + N  GF A   L +  +D
Sbjct:   307 SKNKMGFEAFQLLPREAQD 325

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2170081 AT5G50140 "AT5G50140" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 4.5e-12, Sum P(3) = 4.5e-12
 Identities = 45/171 (26%), Positives = 77/171 (45%)

Query:    41 LHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHV-----------DKIKA 89
             LH A  LG+ +   +I    P L    ++   + LH+A++  H            + I++
Sbjct:    31 LHLAVKLGNEELVKKIVEIHPSLVSSTNTKSDTPLHLAARLGHTSILLLMLESTAESIES 90

Query:    90 LLQVNPAWCFAGDL---DG-SPLHLAAMKGRIDVLEELFRTRPLAA-SATMIWGETILHL 144
             L +  P      ++   DG +PLH A M G ++ L       PL+  S T+   ET+ HL
Sbjct:    91 LEETVPNDLKLAEMVNKDGFTPLHCAVMNGSVETLTAFINKAPLSFDSVTLQTSETVFHL 150

Query:   145 CVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELV 195
               +H +++A  F+  N +  + L   D  G T+   A +V   F +LV  +
Sbjct:   151 AARHKKMEAFIFMAKNANLRRLLYELDGEGNTVLHAAASVG--FLSLVSYI 199

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2132711 AT4G10720 "AT4G10720" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
 Identities = 56/210 (26%), Positives = 91/210 (43%)

Query:    40 PLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCF 99
             PLH A+  G++ F  E+   KP  A +L++   S LH+A ++     + +LL+V+     
Sbjct:    40 PLHIASASGNLSFAMELMNLKPSFARKLNTYGLSPLHLAIEEGQTRLVLSLLKVDSDLVR 99

Query:   100 AGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLL 158
                 +G +P H    +G  D++ E     P       + GET LH+ V +++ + L+ LL
Sbjct:   100 LRGREGMTPFHQVVRRGETDLMTEFLLACPGCIKDANVNGETALHIAVSNDRYEELEVLL 159

Query:   159 D------NMD----DPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIR 208
                      D    + QFLN  D  G T   +A      +QN  + V            +
Sbjct:   160 GWVQRLRQTDAESLEMQFLNKRDQDGNTALHIAA-----YQNRFKAV------------K 202

Query:   209 FLTTRTMIEVNALNANGFMALDTLAQSKRD 238
              L   + +  N  N  G  ALD L  ++RD
Sbjct:   203 ILVKCSAVNRNIHNRTGLTALDIL-HNQRD 231

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2157553 AT5G54710 "AT5G54710" [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 1.2e-11, Sum P(3) = 1.2e-11
 Identities = 36/128 (28%), Positives = 61/128 (47%)

Query:    61 PELAGELDSNQFSALHIASQKVHVDKIKALLQV--NPAWCFAGDLDG-SPLHLAAMKGRI 117
             P L  + D  Q + LH A +  +++  + LL V  N       D DG +PLH A + G +
Sbjct:   187 PNLILDADEEQSTLLHKACKSGNLEMARTLLDVDVNQEIAEKVDKDGLTPLHRAVINGSV 246

Query:   118 DVLEELFRTRPLAASATMIWG-ETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMT 176
             ++L+E     P + + T     ET+ HL  K+ +  A  F+  + +  Q L + D    T
Sbjct:   247 EILKEFLCKAPSSFNITTQGTIETVFHLAAKYQKTKAFIFMAQSANIRQLLYSLDAEDNT 306

Query:   177 ITQLAVAV 184
             +  +A +V
Sbjct:   307 VLHVAASV 314

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026489 AT1G07710 "AT1G07710" [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
 Identities = 45/130 (34%), Positives = 64/130 (49%)

Query:    41 LHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFA 100
             LH AA  GH +    +      LAG   SN  +ALH AS+  HV  IKALL   PA    
Sbjct:   139 LHTAATQGHTEVVNFLLELGSSLAGIAKSNGKTALHSASRNGHVKVIKALLASEPAIAIR 198

Query:   101 GDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLL- 158
              D  G + LH+A     ++V+EEL +    + +     G T LH+  +  +   +K LL 
Sbjct:   199 MDKKGQTALHMAVKGTNVEVVEELIKADRSSINIADTKGNTALHIAARKGRSQIVKLLLA 258

Query:   159 DNMDDPQFLN 168
             +NM D + +N
Sbjct:   259 NNMTDTKAVN 268

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2012532 AT1G14480 "AT1G14480" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
 Identities = 34/119 (28%), Positives = 62/119 (52%)

Query:    40 PLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCF 99
             PLH AA+ G+++F  E+   KP  A +L+++ +S LH+A +K   D +  +L  +     
Sbjct:    40 PLHVAAVFGNIEFAMEMLNLKPSFARKLNTSGYSPLHLAVEKEQSDFVSHMLWHDGGLSR 99

Query:   100 AGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFL 157
                 +G +P HL  ++G  D++ E   T P       +  +  LHL V +++ + L+ L
Sbjct:   100 VKGRNGVTPFHLLVIRGDDDLVAECLITSPECIEDVNVDRQNALHLAVMNDRFEVLQVL 158

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	323
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-16
pfam13962	114	pfam13962, PGG, Domain of unknown function	3e-16
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	6e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-09
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-08
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-06
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	9e-06
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-05
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	0.001
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	0.001

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 74.3 bits (183), Expect = 1e-16
 Identities = 42/128 (32%), Positives = 64/128 (50%), Gaps = 8/128 (6%)

Query: 68  DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRT 126
           D +  + LH+A+   H++ +K LL+       A D DG +PLHLAA  G +++++ L   
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENGADVN-AKDNDGRTPLHLAAKNGHLEIVKLLLEK 62

Query: 127 RPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKL 186
                +A    G T LHL  ++  LD +K LL +  D    NA D  G T   L +A K 
Sbjct: 63  GADV-NARDKDGNTPLHLAARNGNLDVVKLLLKHGADV---NARDKDGRTP--LHLAAKN 116

Query: 187 CFQNLVEL 194
               +V+L
Sbjct: 117 GHLEVVKL 124

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score = 73.3 bits (181), Expect = 3e-16
 Identities = 33/76 (43%), Positives = 41/76 (53%), Gaps = 6/76 (7%)

Query: 253 KKMRNALMVVASLTATMAFQAGVNPPHGPWQDTSFSSSQGHAT--AHRYTCILFF--NTT 308
           +K RN+L+VVA+L AT+ F AG  PP G WQD       G             FF  NT 
Sbjct: 5   EKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDG-GHHAGTPILAGKPRRFKAFFVSNTI 63

Query: 309 GFLASL-SIILLLSIG 323
            F+ASL ++ILLL I 
Sbjct: 64  AFVASLVAVILLLYIV 79

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 64.3 bits (157), Expect = 6e-13
 Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 4/120 (3%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCF 99
           PLH AA  GH++    +     ++    D++  + LH+A++  H++ +K LL+   A   
Sbjct: 10  PLHLAASNGHLEVVKLLLENGADVN-AKDNDGRTPLHLAAKNGHLEIVKLLLE-KGADVN 67

Query: 100 AGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLL 158
           A D DG +PLHLAA  G +DV++ L +      +A    G T LHL  K+  L+ +K LL
Sbjct: 68  ARDKDGNTPLHLAARNGNLDVVKLLLK-HGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 52.6 bits (127), Expect = 5e-09
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 19/98 (19%)

Query: 75  LHIASQKVHVDKIKALLQVNPAWCFAGDLD----GSPLHLAAMKGRIDVLEELFRTRPLA 130
           LH+A++  +++ +K LL+         D++     + LHLAA  G +++++ L     L 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGA------DVNLGDTDTALHLAARNGNLEIVKLL-----LE 49

Query: 131 ASA----TMIWGETILHLCVKHNQLDALKFLLDNMDDP 164
             A        G T LHL  ++  L+ +K LL++  D 
Sbjct: 50  HGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADI 87

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 51.1 bits (123), Expect = 2e-08
 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 12/89 (13%)

Query: 108 LHLAAMKGRIDVLEELFRTRPLAASATMIWGET--ILHLCVKHNQLDALKFLLDNMDDPQ 165
           LHLAA  G +++++ L     L   A +  G+T   LHL  ++  L+ +K LL++  D  
Sbjct: 1   LHLAAKNGNLELVKLL-----LEKGADVNLGDTDTALHLAARNGNLEIVKLLLEHGAD-- 53

Query: 166 FLNAEDDYGMTITQLAVAVKLCFQNLVEL 194
            +NA+D  G T   L +A +     +V+L
Sbjct: 54  -VNAKDKDGNTA--LHLAARNGNLEIVKL 79

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 3/83 (3%)

Query: 41  LHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFA 100
           LH AA  G+++    ++    + A     +  +ALH+A++  +++ +K LL+        
Sbjct: 1   LHLAAKNGNLEL---VKLLLEKGADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 101 GDLDGSPLHLAAMKGRIDVLEEL 123
                + LHLAA  G +++++ L
Sbjct: 58  DKDGNTALHLAARNGNLEIVKLL 80

Length = 91

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 40/170 (23%), Positives = 67/170 (39%), Gaps = 34/170 (20%)

Query: 77  IASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRIDVLEELFRTRPLAASATM- 135
           + +  V V++++ LL       F G+   +PLHL  +    + ++++ R   L A A + 
Sbjct: 20  LNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHL-YLHYSSEKVKDIVRLL-LEAGADVN 77

Query: 136 ---IWGETILHLCVKHNQ-LDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNL 191
                G T LHL + +   LD +K L+    D   +NA+D  G T   +           
Sbjct: 78  APERCGFTPLHLYLYNATTLDVIKLLIKAGAD---VNAKDKVGRTPLHV----------- 123

Query: 192 VELVEEYCHSKWGYVIRFLTTRTMIE----VNALNANGFMALDTLAQSKR 237
                 Y        I     R ++     VNAL+  G   L  L +S+ 
Sbjct: 124 ------YLSGFN---INPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRN 164

Length = 471

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 42.2 bits (100), Expect = 9e-06
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 106 SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLL 158
           + LH AA+ GR+++++ L          T   G T LH+  ++  L+ LK LL
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDIN-RTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 21/92 (22%)

Query: 138 GETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEE 197
           G T LHL   +  L+ +K LL+N  D    NA+D+ G T   LA               +
Sbjct: 7   GRTPLHLAASNGHLEVVKLLLENGADV---NAKDNDGRTPLHLAA--------------K 49

Query: 198 YCHSKWGYVIRFLTTRTMIEVNALNANGFMAL 229
             H +   +++ L  +   +VNA + +G   L
Sbjct: 50  NGHLE---IVKLLLEKG-ADVNARDKDGNTPL 77

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 39.8 bits (92), Expect = 0.001
 Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 18/133 (13%)

Query: 39  FPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIAS-----QKVHVDKIKALLQV 93
            PLH+AA  G       +     ++    D++  + LH+A+      + +++  K LL+ 
Sbjct: 75  LPLHSAASKGDDKIVKLLLASGADVN-AKDADGDTPLHLAALNGNPPEGNIEVAKLLLEA 133

Query: 94  NPAWCFAG--DLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATM----IWGETILHLCV 146
                     D DG +PLH AA+ G  D++E L     L A A       +G T L    
Sbjct: 134 GADLDVNNLRDEDGNTPLHWAALNGDADIVELL-----LEAGADPNSRNSYGVTALDPAA 188

Query: 147 KHNQLDALKFLLD 159
           K+ +++ +K LLD
Sbjct: 189 KNGRIELVKLLLD 201

Length = 235

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 39.4 bits (91), Expect = 0.001
 Identities = 35/149 (23%), Positives = 55/149 (36%), Gaps = 18/149 (12%)

Query: 38  EFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQ--VNP 95
              L         +   ++   +   A   D +    LH A+ K     +K LL    + 
Sbjct: 42  YLELALLPAASLSELLLKLIVDRHLAAR--DLDGRLPLHSAASKGDDKIVKLLLASGADV 99

Query: 96  AWCFAGDLDG-SPLHLAAMKGR-----IDVLEELFRTRPLAASATMI--WGETILHLCVK 147
               A D DG +PLHLAA+ G      I+V + L           +    G T LH    
Sbjct: 100 ---NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAAL 156

Query: 148 HNQLDALKFLLDNMDDPQFLNAEDDYGMT 176
           +   D ++ LL+        N+ + YG+T
Sbjct: 157 NGDADIVELLLEA---GADPNSRNSYGVT 182

Length = 235

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	323
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02859	209	ankyrin repeat protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02859	209	ankyrin repeat protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	99.98
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.98
PHA02917	661	ankyrin-like protein; Provisional	99.97
PHA02730	672	ankyrin-like protein; Provisional	99.97
PHA02917	661	ankyrin-like protein; Provisional	99.97
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.97
KOG0508	615	consensus Ankyrin repeat protein [General function	99.97
PHA02795	437	ankyrin-like protein; Provisional	99.97
PHA02795	437	ankyrin-like protein; Provisional	99.96
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.96
PHA02730	672	ankyrin-like protein; Provisional	99.96
PHA02792	631	ankyrin-like protein; Provisional	99.96
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.96
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.96
PHA02792	631	ankyrin-like protein; Provisional	99.95
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.95
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.95
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.94
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.94
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.93
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.93
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.93
KOG0514	452	consensus Ankyrin repeat protein [General function	99.92
KOG0514	452	consensus Ankyrin repeat protein [General function	99.91
PHA02743	166	Viral ankyrin protein; Provisional	99.91
PHA02743	166	Viral ankyrin protein; Provisional	99.9
PHA02741	169	hypothetical protein; Provisional	99.9
PHA02741	169	hypothetical protein; Provisional	99.88
PHA02884	300	ankyrin repeat protein; Provisional	99.88
PHA02736	154	Viral ankyrin protein; Provisional	99.88
PHA02884	300	ankyrin repeat protein; Provisional	99.88
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.87
PHA02736	154	Viral ankyrin protein; Provisional	99.86
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.86
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.86
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.85
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.83
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.8
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.8
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.79
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.78
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.78
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.77
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.77
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.75
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.68
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.65
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.64
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.62
PF13962	113	PGG: Domain of unknown function	99.59
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.53
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.49
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.49
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.49
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.48
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.48
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.46
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.43
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.43
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.4
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	99.0
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.98
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.88
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.86
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.85
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.79
PF13606	30	Ank_3: Ankyrin repeat	98.78
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.78
KOG0522	560	consensus Ankyrin repeat protein [General function	98.74
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.74
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.72
PF13606	30	Ank_3: Ankyrin repeat	98.69
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.67
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.55
KOG0522	560	consensus Ankyrin repeat protein [General function	98.52
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.45
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.4
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.39
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.32
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.25
KOG0511	516	consensus Ankyrin repeat protein [General function	98.17
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.13
KOG2384	223	consensus Major histocompatibility complex protein	98.13
KOG0511	516	consensus Ankyrin repeat protein [General function	98.11
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.05
KOG2384	223	consensus Major histocompatibility complex protein	98.03
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.99
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.8
KOG2505	591	consensus Ankyrin repeat protein [General function	96.78
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.56
KOG2505	591	consensus Ankyrin repeat protein [General function	96.39
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.19
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.98
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.86
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	93.23
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	92.11

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1e-41  Score=261.61  Aligned_cols=207  Identities=25%  Similarity=0.272  Sum_probs=189.3

Q ss_pred             CcHHHHHHHhCCHHHHHHHhccCc-cccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHh
Q 048253            2 KSMLYEAALKGCEPTLLELLQQDQ-LIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQ   80 (323)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~   80 (323)
                      .++.+.++......-++.+++..+ ..+...  |.+|+||||+||..|+.+++++|++.....++.+|..||||||.|+.
T Consensus         4 ~~~~~~~~~~~~~~kveel~~s~~kSL~~r~--dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s   81 (226)
T KOG4412|consen    4 ASLGKAICENCEEFKVEELIQSDPKSLNARD--DQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAAS   81 (226)
T ss_pred             cchHHHHHhhchHHHHHHHHhcChhhhhccc--cccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhh
Confidence            478888999999999999999887 333332  33599999999999999999999976544457889999999999999


Q ss_pred             cCCHHHHHHHHhc-CCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHH
Q 048253           81 KVHVDKIKALLQV-NPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLL  158 (323)
Q Consensus        81 ~g~~~~v~~Ll~~-~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll  158 (323)
                      .|+.|+|+.|+.+ |+++ +..+..| ||||||+..|+.+++++|++ +++.++.+|..|+||||-|+..|..+++++|+
T Consensus        82 ~g~~evVk~Ll~r~~adv-na~tn~G~T~LHyAagK~r~eIaqlLle-~ga~i~~kD~~~qtplHRAAavGklkvie~Li  159 (226)
T KOG4412|consen   82 NGNDEVVKELLNRSGADV-NATTNGGQTCLHYAAGKGRLEIAQLLLE-KGALIRIKDKQGQTPLHRAAAVGKLKVIEYLI  159 (226)
T ss_pred             cCcHHHHHHHhcCCCCCc-ceecCCCcceehhhhcCChhhHHHHHHh-cCCCCcccccccCchhHHHHhccchhhHHHHH
Confidence            9999999999999 9999 8899999 99999999999999999999 88999999999999999999999999999999


Q ss_pred             hCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhh
Q 048253          159 DNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQ  234 (323)
Q Consensus       159 ~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~  234 (323)
                      ..|+.   +|.+|+.|+||||.|...++.                 ++..+|+++| ++++..|++| ||+..|.-
T Consensus       160 ~~~a~---~n~qDk~G~TpL~~al~e~~~-----------------d~a~lLV~~g-Ad~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  160 SQGAP---LNTQDKYGFTPLHHALAEGHP-----------------DVAVLLVRAG-ADTDREDKEG-TALRIACN  213 (226)
T ss_pred             hcCCC---CCcccccCccHHHHHHhccCc-----------------hHHHHHHHhc-cceeeccccC-chHHHHHH
Confidence            99988   999999999999999888899                 9999999999 9999999999 99887766

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.3e-39  Score=280.11  Aligned_cols=207  Identities=21%  Similarity=0.214  Sum_probs=183.1

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHh
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQ   80 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~   80 (323)
                      |+||||.|+..|+.+++++|++.+++++..   +  |.||||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+.
T Consensus        30 G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~---d--~~TpLh~Aa~~g~~eiV~lLL~~Gadv-n~~d~~G~TpLh~Aa~  103 (284)
T PHA02791         30 GHSALYYAIADNNVRLVCTLLNAGALKNLL---E--NEFPLHQAATLEDTKIVKILLFSGMDD-SQFDDKGNTALYYAVD  103 (284)
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHCcCCCcCC---C--CCCHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHH
Confidence            789999999999999999999999875332   3  789999999999999999999999988 8899999999999999


Q ss_pred             cCCHHHHHHHHhcCCccccccCCCC--cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHH
Q 048253           81 KVHVDKIKALLQVNPAWCFAGDLDG--SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLL  158 (323)
Q Consensus        81 ~g~~~~v~~Ll~~~~~~~~~~~~~g--t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll  158 (323)
                      .|+.+++++|+++|+++ +.++..|  ||||+|+..|+.+++++|++..+...+.  ..|+||||+|+.+|+.+++++|+
T Consensus       104 ~g~~eivk~Ll~~gadi-n~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~--~~g~TpLh~Aa~~g~~eiv~lLL  180 (284)
T PHA02791        104 SGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL--AILLSCIHITIKNGHVDMMILLL  180 (284)
T ss_pred             cCCHHHHHHHHHCCCCc-CccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCccccc--ccCccHHHHHHHcCCHHHHHHHH
Confidence            99999999999999998 5666665  8999999999999999999943322211  25899999999999999999999


Q ss_pred             hCCCCCCCCcccccCCCcH-HHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhhccC
Q 048253          159 DNMDDPQFLNAEDDYGMTI-TQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKR  237 (323)
Q Consensus       159 ~~g~~~~~~~~~d~~g~t~-Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~~~~  237 (323)
                      ++|++   ++.+|..|.|| ||+|+..|+.                 ++|++|+++| ++++.+|.+| ||+        
T Consensus       181 ~~gAd---~n~~d~~g~t~~L~~Aa~~~~~-----------------e~v~lLl~~G-a~in~~~~~~-~~l--------  230 (284)
T PHA02791        181 DYMTS---TNTNNSLLFIPDIKLAIDNKDL-----------------EMLQALFKYD-INIYSVNLEN-VLL--------  230 (284)
T ss_pred             HCCCC---CCcccCCCCChHHHHHHHcCCH-----------------HHHHHHHHCC-CCCccCcccC-ccC--------
Confidence            99999   89999999987 9999999999                 9999999998 9999999955 554        


Q ss_pred             CCchhhhHHHH
Q 048253          238 DKKDWEIEDWK  248 (323)
Q Consensus       238 ~~~~~~i~~~L  248 (323)
                        +..|++++|
T Consensus       231 --~~~e~~~~l  239 (284)
T PHA02791        231 --DDAEIAKMI  239 (284)
T ss_pred             --CCHHHHHHH
Confidence              566788877

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.2e-38  Score=292.31  Aligned_cols=217  Identities=20%  Similarity=0.147  Sum_probs=204.0

Q ss_pred             CcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhc
Q 048253            2 KSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQK   81 (323)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~   81 (323)
                      +++||.|+..|+.+++++|++.|++++..   +..|.||||+|+..|+.+++++|+++|+++ +..+..+.||||.|+..
T Consensus         3 ~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~---~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~t~L~~A~~~   78 (413)
T PHA02875          3 QVALCDAILFGELDIARRLLDIGINPNFE---IYDGISPIKLAMKFRDSEAIKLLMKHGAIP-DVKYPDIESELHDAVEE   78 (413)
T ss_pred             chHHHHHHHhCCHHHHHHHHHCCCCCCcc---CCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-cccCCCcccHHHHHHHC
Confidence            68999999999999999999999886443   567999999999999999999999999987 77888999999999999


Q ss_pred             CCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhC
Q 048253           82 VHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDN  160 (323)
Q Consensus        82 g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~  160 (323)
                      |+.+++++|++.|+......+..| ||||+|+..|+.+++++|++ .+++++..+..|.||||+|+..|+.+++++|+++
T Consensus        79 g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~-~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~  157 (413)
T PHA02875         79 GDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIA-RGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH  157 (413)
T ss_pred             CCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            999999999999998766677789 99999999999999999999 8899999999999999999999999999999999


Q ss_pred             CCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCC-chhhhhhhccCCC
Q 048253          161 MDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGF-MALDTLAQSKRDK  239 (323)
Q Consensus       161 g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~-tpl~~A~~~~~~~  239 (323)
                      |++   ++.+|..|.||||+|+..|+.                 +++++|+++| ++++..+..|. ||+++|+.    .
T Consensus       158 g~~---~~~~d~~g~TpL~~A~~~g~~-----------------eiv~~Ll~~g-a~~n~~~~~~~~t~l~~A~~----~  212 (413)
T PHA02875        158 KAC---LDIEDCCGCTPLIIAMAKGDI-----------------AICKMLLDSG-ANIDYFGKNGCVAALCYAIE----N  212 (413)
T ss_pred             CCC---CCCCCCCCCCHHHHHHHcCCH-----------------HHHHHHHhCC-CCCCcCCCCCCchHHHHHHH----c
Confidence            998   899999999999999999999                 9999999999 89999998885 88999999    8


Q ss_pred             chhhhHHHH
Q 048253          240 KDWEIEDWK  248 (323)
Q Consensus       240 ~~~~i~~~L  248 (323)
                      ++.+++++|
T Consensus       213 ~~~~iv~~L  221 (413)
T PHA02875        213 NKIDIVRLF  221 (413)
T ss_pred             CCHHHHHHH
Confidence            999999999

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7e-38  Score=290.43  Aligned_cols=222  Identities=19%  Similarity=0.193  Sum_probs=174.1

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-----------------
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPEL-----------------   63 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-----------------   63 (323)
                      |.||||.|+..|+.++|++|++.|++++..   +..|.||||+|+..|+.+++++|+++|++.                 
T Consensus        35 ~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~---~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll  111 (434)
T PHA02874         35 TTTPLIDAIRSGDAKIVELFIKHGADINHI---NTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTIL  111 (434)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHH
Confidence            568999999999999999999998876433   666889999999999999999988876542                 


Q ss_pred             -----ccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccc
Q 048253           64 -----AGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIW  137 (323)
Q Consensus        64 -----~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~  137 (323)
                           ++.++..|.||||+|+..|+.+++++|+++|+++ +.++..| ||||+|+..|+.+++++|++ .+++++..+..
T Consensus       112 ~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~-~g~~~n~~~~~  189 (434)
T PHA02874        112 DCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADV-NIEDDNGCYPIHIAIKHNFFDIIKLLLE-KGAYANVKDNN  189 (434)
T ss_pred             HCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHCCcHHHHHHHHH-CCCCCCCCCCC
Confidence                 2567788999999999999999999999999988 7788888 99999999999999999998 78888888889


Q ss_pred             cccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHH-----------------hh
Q 048253          138 GETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEY-----------------CH  200 (323)
Q Consensus       138 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~-----------------~~  200 (323)
                      |+||||+|+..|+.+++++|+++|++   ++.++..|.||||.|+..+..   .+++|...                 ..
T Consensus       190 g~tpL~~A~~~g~~~iv~~Ll~~g~~---i~~~~~~g~TpL~~A~~~~~~---~i~~Ll~~~~in~~d~~G~TpLh~A~~  263 (434)
T PHA02874        190 GESPLHNAAEYGDYACIKLLIDHGNH---IMNKCKNGFTPLHNAIIHNRS---AIELLINNASINDQDIDGSTPLHHAIN  263 (434)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCC---CcCCCCCCCCHHHHHHHCChH---HHHHHHcCCCCCCcCCCCCCHHHHHHh
Confidence            99999999999999999999999887   777888888888888876543   22222210                 00


Q ss_pred             c-chHHHHHHHhhcccccccccccCCCchhhhhhh
Q 048253          201 S-KWGYVIRFLTTRTMIEVNALNANGFMALDTLAQ  234 (323)
Q Consensus       201 ~-~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~  234 (323)
                      . ...+++++|+++| ++++.+|..|+||+++|++
T Consensus       264 ~~~~~~iv~~Ll~~g-ad~n~~d~~g~TpL~~A~~  297 (434)
T PHA02874        264 PPCDIDIIDILLYHK-ADISIKDNKGENPIDTAFK  297 (434)
T ss_pred             cCCcHHHHHHHHHCc-CCCCCCCCCCCCHHHHHHH
Confidence            0 1236666666665 6666666666666666665

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.8e-38  Score=293.78  Aligned_cols=216  Identities=20%  Similarity=0.166  Sum_probs=178.3

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHH-----------------------------
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVD-----------------------------   51 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~-----------------------------   51 (323)
                      +.||||.|+..|+.++|++|+++|++++.   .|..|.||||+||..|+.+                             
T Consensus        37 ~~tPLh~A~~~g~~e~vk~Ll~~gadvn~---~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~  113 (477)
T PHA02878         37 PFIPLHQAVEARNLDVVKSLLTRGHNVNQ---PDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRN  113 (477)
T ss_pred             CcchHHHHHHcCCHHHHHHHHHCCCCCCC---CCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCC
Confidence            46899999999999999999999988754   4778999999999887654                             


Q ss_pred             -----------------------------------HHHHHHHhCCCcccccCCC-CCcHHHHHHhcCCHHHHHHHHhcCC
Q 048253           52 -----------------------------------FEGEIRRQKPELAGELDSN-QFSALHIASQKVHVDKIKALLQVNP   95 (323)
Q Consensus        52 -----------------------------------~v~~Ll~~~~~~~~~~~~~-g~tpL~~A~~~g~~~~v~~Ll~~~~   95 (323)
                                                         ++++|+++|+++ +.++.. |+||||+|+..|+.+++++|++.|+
T Consensus       114 ~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadi-n~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~ga  192 (477)
T PHA02878        114 VEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADI-NMKDRHKGNTALHYATENKDQRLTELLLSYGA  192 (477)
T ss_pred             HHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCC-CccCCCCCCCHHHHHHhCCCHHHHHHHHHCCC
Confidence                                               445555556665 666766 8889999988888889998888888


Q ss_pred             ccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhh-CchhHHHHHHhCCCCCCCCccccc-
Q 048253           96 AWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKH-NQLDALKFLLDNMDDPQFLNAEDD-  172 (323)
Q Consensus        96 ~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~-g~~~~v~~Ll~~g~~~~~~~~~d~-  172 (323)
                      ++ +.++..| ||||+|+..|+.+++++|++ .+++++.+|..|+||||+|+.. ++.+++++|+++|++   ++.++. 
T Consensus       193 d~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~-~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gad---vn~~~~~  267 (477)
T PHA02878        193 NV-NIPDKTNNSPLHHAVKHYNKPIVHILLE-NGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVD---VNAKSYI  267 (477)
T ss_pred             CC-CCcCCCCCCHHHHHHHhCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCC---CCccCCC
Confidence            88 7788888 89999888888888888888 7888888888888999988875 678888888888888   777775 


Q ss_pred             CCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhhccCCCchhhhHHHH
Q 048253          173 YGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       173 ~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~~~~~~~~~~i~~~L  248 (323)
                      .|.||||+|  .++.                 +++++|+++| +|++.+|.+|.||+|+|+..   ....++.++|
T Consensus       268 ~g~TpLh~A--~~~~-----------------~~v~~Ll~~g-adin~~d~~g~TpL~~A~~~---~~~~~~~~~l  320 (477)
T PHA02878        268 LGLTALHSS--IKSE-----------------RKLKLLLEYG-ADINSLNSYKLTPLSSAVKQ---YLCINIGRIL  320 (477)
T ss_pred             CCCCHHHHH--ccCH-----------------HHHHHHHHCC-CCCCCcCCCCCCHHHHHHHH---cCccchHHHH
Confidence            788899888  4566                 8999999998 99999999999999999872   2233455544

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.4e-37  Score=292.53  Aligned_cols=234  Identities=22%  Similarity=0.191  Sum_probs=148.8

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHH-----HHHcCCHHHHHHHHHhCCCcccccCCCCCcHH
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHA-----AALLGHVDFEGEIRRQKPELAGELDSNQFSAL   75 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~-----A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL   75 (323)
                      +.||||.|+..|+.++|++|++.|++++..   +..+.||||+     |+..|+.+++++|+++|+++ +..|..|.|||
T Consensus        35 ~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~---~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i-~~~d~~g~tpL  110 (480)
T PHA03100         35 PVLPLYLAKEARNIDVVKILLDNGADINSS---TKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANV-NAPDNNGITPL  110 (480)
T ss_pred             cchhhhhhhccCCHHHHHHHHHcCCCCCCc---cccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCC-CCCCCCCCchh
Confidence            346777777777777777777776665443   3446667777     66667777777777766666 66666666777


Q ss_pred             HHHH--hcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhC--CHHHHHHHHHhCCCcccccccccccHHHHHHhhCc
Q 048253           76 HIAS--QKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKG--RIDVLEELFRTRPLAASATMIWGETILHLCVKHNQ  150 (323)
Q Consensus        76 ~~A~--~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~  150 (323)
                      |+|+  ..|+.+++++|+++|+++ +..+..| ||||+|+..|  +.+++++|++ .+++++..|..|.||||+|+..|+
T Consensus       111 ~~A~~~~~~~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~-~g~din~~d~~g~tpL~~A~~~~~  188 (480)
T PHA03100        111 LYAISKKSNSYSIVEYLLDNGANV-NIKNSDGENLLHLYLESNKIDLKILKLLID-KGVDINAKNRYGYTPLHIAVEKGN  188 (480)
T ss_pred             hHHHhcccChHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCChHHHHHHHHH-CCCCcccccCCCCCHHHHHHHhCC
Confidence            7776  666667777766666666 5566666 6666666666  6666666666 566666666666666666666666


Q ss_pred             hhHHHHHHhCCCCCCCCcccccCC------CcHHHHHHhhcchhhhHHHHHHHHhh------------------cchHHH
Q 048253          151 LDALKFLLDNMDDPQFLNAEDDYG------MTITQLAVAVKLCFQNLVELVEEYCH------------------SKWGYV  206 (323)
Q Consensus       151 ~~~v~~Ll~~g~~~~~~~~~d~~g------~t~Lh~A~~~~~~~~~~~~~l~~~~~------------------~~~~~~  206 (323)
                      .+++++|+++|++   ++..+..|      .||||.|+..++...+++++|.+++.                  .+..++
T Consensus       189 ~~iv~~Ll~~ga~---~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~i  265 (480)
T PHA03100        189 IDVIKFLLDNGAD---INAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEF  265 (480)
T ss_pred             HHHHHHHHHcCCC---ccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            6666666666666   55555555      56666666666511133333332210                  012267


Q ss_pred             HHHHhhcccccccccccCCCchhhhhhhccCCCchhhhHHHH
Q 048253          207 IRFLTTRTMIEVNALNANGFMALDTLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       207 v~~Ll~~g~~~~~~~d~~g~tpl~~A~~~~~~~~~~~i~~~L  248 (323)
                      +++|++.| ++++.+|..|.||+++|++    .++.+++++|
T Consensus       266 v~~Ll~~g-ad~n~~d~~g~tpl~~A~~----~~~~~iv~~L  302 (480)
T PHA03100        266 VKYLLDLG-ANPNLVNKYGDTPLHIAIL----NNNKEIFKLL  302 (480)
T ss_pred             HHHHHHcC-CCCCccCCCCCcHHHHHHH----hCCHHHHHHH
Confidence            77777766 5777777777777777776    6666666666

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=3.1e-37  Score=284.88  Aligned_cols=247  Identities=12%  Similarity=0.065  Sum_probs=143.7

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcC--CHHHHHHHHHhCCCcccccCCCCCcHHHHH
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLG--HVDFEGEIRRQKPELAGELDSNQFSALHIA   78 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A   78 (323)
                      |+||||+|+..|+.++|++|+++|++++.   +|..|.||||+|+..+  ..+++++|+++|+++....|.+|.|||| |
T Consensus        72 G~TpLh~Aa~~g~~eiv~lLL~~GAdin~---~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-a  147 (446)
T PHA02946         72 GNYPLHIASKINNNRIVAMLLTHGADPNA---CDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-A  147 (446)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCcCCCCC---CCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-H
Confidence            45566666666666666666655555432   2445556666555543  2455555555555552234555556654 4


Q ss_pred             HhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCC--HHHHHHHHHhCCCcccccccccccHHHHHHhhC--chhH
Q 048253           79 SQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGR--IDVLEELFRTRPLAASATMIWGETILHLCVKHN--QLDA  153 (323)
Q Consensus        79 ~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~--~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~  153 (323)
                      +..++.+++++|++.|+++ +.++..| ||||+|+..++  .+++++|++ .+++++.+|.+|+||||+|+..+  +.++
T Consensus       148 a~~~~~~vv~~Ll~~gad~-~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~-~Gadin~~d~~G~TpLH~Aa~~~~~~~~i  225 (446)
T PHA02946        148 CTDPSERVFKKIMSIGFEA-RIVDKFGKNHIHRHLMSDNPKASTISWMMK-LGISPSKPDHDGNTPLHIVCSKTVKNVDI  225 (446)
T ss_pred             HHCCChHHHHHHHhccccc-cccCCCCCCHHHHHHHhcCCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCCCcHHH
Confidence            4445555666666655555 5555556 66666555433  455666666 55666666666666666666554  5556


Q ss_pred             HHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccc---------------
Q 048253          154 LKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEV---------------  218 (323)
Q Consensus       154 v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~---------------  218 (323)
                      +++|++ |++   +|.+|..|.||||+|+..++.                .+++++|+++| +++               
T Consensus       226 v~lLl~-gad---in~~d~~G~TpLh~A~~~~~~----------------~~~~~~Ll~~g-~~~~~~~~~~a~~~~~~~  284 (446)
T PHA02946        226 INLLLP-STD---VNKQNKFGDSPLTLLIKTLSP----------------AHLINKLLSTS-NVITDQTVNICIFYDRDD  284 (446)
T ss_pred             HHHHHc-CCC---CCCCCCCCCCHHHHHHHhCCh----------------HHHHHHHHhCC-CCCCCcHHHHHHHcCchH
Confidence            666553 455   666666666666666665542                14555555554 221               


Q ss_pred             -----ccc-ccCCCchhhhhhhccCCCchhhhHHHHhhhHHHHHHHHHHHHH----HHHHHHhhhccCCC
Q 048253          219 -----NAL-NANGFMALDTLAQSKRDKKDWEIEDWKMIGWKKMRNALMVVAS----LTATMAFQAGVNPP  278 (323)
Q Consensus       219 -----~~~-d~~g~tpl~~A~~~~~~~~~~~i~~~L~~~~~~~~~~~~~~~~----~~~~~~~~a~~~~p  278 (323)
                           +.. +..|.||||+|++    .++.+++++|......+.++++.++.    .+....+..++.+-
T Consensus       285 ~~e~l~~~g~~~~~TpLh~Aa~----~g~~eivk~Ll~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~n  350 (446)
T PHA02946        285 VLEIINDKGKQYDSTDFKMAVE----VGSIRCVKYLLDNDIICEDAMYYAVLSEYETMVDYLLFNHFSVD  350 (446)
T ss_pred             HHHHHHHcCcccCCCHHHHHHH----cCCHHHHHHHHHCCCccccHHHHHHHhCHHHHHHHHHHCCCCCC
Confidence                 111 2357899999999    99999999996665556777777663    44455556565543

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=5e-37  Score=265.60  Aligned_cols=202  Identities=15%  Similarity=0.063  Sum_probs=183.5

Q ss_pred             HhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHH
Q 048253           10 LKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKA   89 (323)
Q Consensus        10 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~   89 (323)
                      ..++.+++++|+++++..     .|.+|.||||+|+..|+.+++++|++.++++ +..  +|+||||+|+..|+.+++++
T Consensus         8 ~~~~~~~~~~Lis~~a~~-----~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~-n~~--d~~TpLh~Aa~~g~~eiV~l   79 (284)
T PHA02791          8 TWKSKQLKSFLSSKDAFK-----ADVHGHSALYYAIADNNVRLVCTLLNAGALK-NLL--ENEFPLHQAATLEDTKIVKI   79 (284)
T ss_pred             ccCHHHHHHHHHhCCCCC-----CCCCCCcHHHHHHHcCCHHHHHHHHHCcCCC-cCC--CCCCHHHHHHHCCCHHHHHH
Confidence            357889999999988742     4777999999999999999999999999876 544  47899999999999999999


Q ss_pred             HHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccc-cHHHHHHhhCchhHHHHHHhCCCCCCCC
Q 048253           90 LLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGE-TILHLCVKHNQLDALKFLLDNMDDPQFL  167 (323)
Q Consensus        90 Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~-t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~  167 (323)
                      |++.|+++ +.++..| ||||+|+..|+.+++++|++ .+++++..+..|+ ||||+|+..|+.+++++|++++.+    
T Consensus        80 LL~~Gadv-n~~d~~G~TpLh~Aa~~g~~eivk~Ll~-~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~----  153 (284)
T PHA02791         80 LLFSGMDD-SQFDDKGNTALYYAVDSGNMQTVKLFVK-KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS----  153 (284)
T ss_pred             HHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCc----
Confidence            99999998 8889999 99999999999999999999 7888888888884 899999999999999999998754    


Q ss_pred             cccc-cCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCch-hhhhhhccCCCchhhhH
Q 048253          168 NAED-DYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMA-LDTLAQSKRDKKDWEIE  245 (323)
Q Consensus       168 ~~~d-~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tp-l~~A~~~~~~~~~~~i~  245 (323)
                       ..| ..|.||||+|+..|+.                 +++++|+++| ++++.+|..|.|| ||+|+.    .++.+++
T Consensus       154 -~~d~~~g~TpLh~Aa~~g~~-----------------eiv~lLL~~g-Ad~n~~d~~g~t~~L~~Aa~----~~~~e~v  210 (284)
T PHA02791        154 -TFDLAILLSCIHITIKNGHV-----------------DMMILLLDYM-TSTNTNNSLLFIPDIKLAID----NKDLEML  210 (284)
T ss_pred             -ccccccCccHHHHHHHcCCH-----------------HHHHHHHHCC-CCCCcccCCCCChHHHHHHH----cCCHHHH
Confidence             223 3589999999999999                 9999999998 8999999999987 999999    9999999


Q ss_pred             HHH
Q 048253          246 DWK  248 (323)
Q Consensus       246 ~~L  248 (323)
                      ++|
T Consensus       211 ~lL  213 (284)
T PHA02791        211 QAL  213 (284)
T ss_pred             HHH
Confidence            999

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.1e-37  Score=290.08  Aligned_cols=237  Identities=20%  Similarity=0.216  Sum_probs=209.2

Q ss_pred             hCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHH-----HHhcCCHH
Q 048253           11 KGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHI-----ASQKVHVD   85 (323)
Q Consensus        11 ~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~-----A~~~g~~~   85 (323)
                      ....++++++++.+... .  ..+..+.||||.|+..|+.+++++|+++|+++ +..+..|.||||+     |+..++.+
T Consensus        12 ~~~~~~~~~~~~~~~~~-~--~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~-~~~~~~~~t~L~~~~~~~a~~~~~~~   87 (480)
T PHA03100         12 IIKVKNIKYIIMEDDLN-D--YSYKKPVLPLYLAKEARNIDVVKILLDNGADI-NSSTKNNSTPLHYLSNIKYNLTDVKE   87 (480)
T ss_pred             HHHHHHHHHHHhcCccc-h--hhhcccchhhhhhhccCCHHHHHHHHHcCCCC-CCccccCcCHHHHHHHHHHHhhchHH
Confidence            34567888999776332 2  23567999999999999999999999999998 8889999999999     99999999


Q ss_pred             HHHHHHhcCCccccccCCCC-cHHHHHH--HhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhC--chhHHHHHHhC
Q 048253           86 KIKALLQVNPAWCFAGDLDG-SPLHLAA--MKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHN--QLDALKFLLDN  160 (323)
Q Consensus        86 ~v~~Ll~~~~~~~~~~~~~g-t~L~~A~--~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~  160 (323)
                      ++++|++.|+++ +..+..| ||||+|+  ..|+.+++++|++ .+++++..+..|.||||+|+..+  +.+++++|+++
T Consensus        88 iv~~Ll~~ga~i-~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~  165 (480)
T PHA03100         88 IVKLLLEYGANV-NAPDNNGITPLLYAISKKSNSYSIVEYLLD-NGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDK  165 (480)
T ss_pred             HHHHHHHCCCCC-CCCCCCCCchhhHHHhcccChHHHHHHHHH-cCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHC
Confidence            999999999999 8899999 9999999  9999999999999 88999999999999999999999  99999999999


Q ss_pred             CCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhc------------------------ch--HHHHHHHhhcc
Q 048253          161 MDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHS------------------------KW--GYVIRFLTTRT  214 (323)
Q Consensus       161 g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~------------------------~~--~~~v~~Ll~~g  214 (323)
                      |++   ++.+|..|.||||+|+..|+.  +++++|.+++..                        +.  .+++++|++.|
T Consensus       166 g~d---in~~d~~g~tpL~~A~~~~~~--~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g  240 (480)
T PHA03100        166 GVD---INAKNRYGYTPLHIAVEKGNI--DVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYG  240 (480)
T ss_pred             CCC---cccccCCCCCHHHHHHHhCCH--HHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcC
Confidence            999   899999999999999999976  899988876432                        22  68999999998


Q ss_pred             cccccccccCCCchhhhhhhccCCCchhhhHHHHhhh-------HHHHHHHHHHHH
Q 048253          215 MIEVNALNANGFMALDTLAQSKRDKKDWEIEDWKMIG-------WKKMRNALMVVA  263 (323)
Q Consensus       215 ~~~~~~~d~~g~tpl~~A~~~~~~~~~~~i~~~L~~~-------~~~~~~~~~~~~  263 (323)
                       ++++.+|..|.||||+|+.    .++.+++++|-..       +..+.++++.+.
T Consensus       241 -~din~~d~~g~TpL~~A~~----~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~  291 (480)
T PHA03100        241 -VPINIKDVYGFTPLHYAVY----NNNPEFVKYLLDLGANPNLVNKYGDTPLHIAI  291 (480)
T ss_pred             -CCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCCccCCCCCcHHHHHH
Confidence             8999999999999999999    8999999998322       244556666554

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.4e-38  Score=241.65  Aligned_cols=174  Identities=24%  Similarity=0.247  Sum_probs=161.2

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHh-CCCcccccCCCCCcHHHHHH
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQ-KPELAGELDSNQFSALHIAS   79 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~tpL~~A~   79 (323)
                      |+||||+||..|+.++|++|++.. ++ ..++.|..|+||||+||..|+.++|+.|+.+ ++++ ++.++.|+||||+|+
T Consensus        38 ~Rt~LHwa~S~g~~eiv~fLlsq~-nv-~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~adv-na~tn~G~T~LHyAa  114 (226)
T KOG4412|consen   38 GRTPLHWACSFGHVEIVYFLLSQP-NV-KPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADV-NATTNGGQTCLHYAA  114 (226)
T ss_pred             CCceeeeeeecCchhHHHHHHhcC-CC-CCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCc-ceecCCCcceehhhh
Confidence            789999999999999999999732 22 2334588899999999999999999999999 8887 999999999999999


Q ss_pred             hcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHH
Q 048253           80 QKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLL  158 (323)
Q Consensus        80 ~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll  158 (323)
                      ..|..|++++|+++|+.+ +.+|..| ||||.|+..|..+++++|+. .++.+|..|..|+||||.|...|+.++..+|+
T Consensus       115 gK~r~eIaqlLle~ga~i-~~kD~~~qtplHRAAavGklkvie~Li~-~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV  192 (226)
T KOG4412|consen  115 GKGRLEIAQLLLEKGALI-RIKDKQGQTPLHRAAAVGKLKVIEYLIS-QGAPLNTQDKYGFTPLHHALAEGHPDVAVLLV  192 (226)
T ss_pred             cCChhhHHHHHHhcCCCC-cccccccCchhHHHHhccchhhHHHHHh-cCCCCCcccccCccHHHHHHhccCchHHHHHH
Confidence            999999999999999998 9999999 99999999999999999999 78999999999999999998899999999999


Q ss_pred             hCCCCCCCCcccccCCCcHHHHHHh
Q 048253          159 DNMDDPQFLNAEDDYGMTITQLAVA  183 (323)
Q Consensus       159 ~~g~~~~~~~~~d~~g~t~Lh~A~~  183 (323)
                      ++|++   ++..|++| ||+..|+.
T Consensus       193 ~~gAd---~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  193 RAGAD---TDREDKEG-TALRIACN  213 (226)
T ss_pred             Hhccc---eeeccccC-chHHHHHH
Confidence            99999   88999988 99888764

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1e-36  Score=285.98  Aligned_cols=234  Identities=17%  Similarity=0.096  Sum_probs=181.6

Q ss_pred             CCcHHHHHHHhC---CHHHHHHHhccCccccccccCCCCCCCHHHHHHHcC-CHHHHHHHHHhCCCcccccCCCCCcHHH
Q 048253            1 MKSMLYEAALKG---CEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLG-HVDFEGEIRRQKPELAGELDSNQFSALH   76 (323)
Q Consensus         1 g~t~L~~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~g~tpL~   76 (323)
                      |+||||.|+..|   +.++++.|++.|++++..   +..|.||||+|+..| +.+++++|+++|+++ +.+|..|+||||
T Consensus        47 g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~---~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~i-n~~~~~g~tpLh  122 (471)
T PHA03095         47 GKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAP---ERCGFTPLHLYLYNATTLDVIKLLIKAGADV-NAKDKVGRTPLH  122 (471)
T ss_pred             CCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCC---CCCCCCHHHHHHHcCCcHHHHHHHHHcCCCC-CCCCCCCCCHHH
Confidence            678999999988   889999999988887544   557899999999998 589999999998887 888888999999


Q ss_pred             HHH--hcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhC--CHHHHHHHHHhCCCcccccccccccHHHHHHhh--C
Q 048253           77 IAS--QKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKG--RIDVLEELFRTRPLAASATMIWGETILHLCVKH--N  149 (323)
Q Consensus        77 ~A~--~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~--g  149 (323)
                      +|+  ..++.+++++|+++|+++ +..+..| ||||+|+..+  +.+++++|++ .+.+++..|..|+||||+|+..  +
T Consensus       123 ~a~~~~~~~~~iv~~Ll~~gad~-~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~-~g~~~~~~d~~g~t~Lh~~~~~~~~  200 (471)
T PHA03095        123 VYLSGFNINPKVIRLLLRKGADV-NALDLYGMTPLAVLLKSRNANVELLRLLID-AGADVYAVDDRFRSLLHHHLQSFKP  200 (471)
T ss_pred             HHhhCCcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHHCCC
Confidence            988  556788889898888888 7778888 8888887765  5777888887 6666666677777777777754  5


Q ss_pred             chhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHh------------------hcchHHHHHHHh
Q 048253          150 QLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYC------------------HSKWGYVIRFLT  211 (323)
Q Consensus       150 ~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~------------------~~~~~~~v~~Ll  211 (323)
                      +.++++.|++.|++   ++.+|..|+||||+|+..+......+..+.+.+                  ..+..+++++|+
T Consensus       201 ~~~i~~~Ll~~g~~---~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL  277 (471)
T PHA03095        201 RARIVRELIRAGCD---PAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLI  277 (471)
T ss_pred             cHHHHHHHHHcCCC---CcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            66677777777766   666666677777776666654333444443321                  123449999999


Q ss_pred             hcccccccccccCCCchhhhhhhccCCCchhhhHHHH
Q 048253          212 TRTMIEVNALNANGFMALDTLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       212 ~~g~~~~~~~d~~g~tpl~~A~~~~~~~~~~~i~~~L  248 (323)
                      ++| ++++.+|.+|+||+++|++    .++.+++++|
T Consensus       278 ~~g-ad~n~~~~~g~tpl~~A~~----~~~~~~v~~L  309 (471)
T PHA03095        278 ALG-ADINAVSSDGNTPLSLMVR----NNNGRAVRAA  309 (471)
T ss_pred             HcC-CCCcccCCCCCCHHHHHHH----hCCHHHHHHH
Confidence            988 8999999999999999999    8888888887

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.1e-36  Score=281.34  Aligned_cols=215  Identities=16%  Similarity=0.145  Sum_probs=190.0

Q ss_pred             CcHHHHHHH--hCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHH
Q 048253            2 KSMLYEAAL--KGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIAS   79 (323)
Q Consensus         2 ~t~L~~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~   79 (323)
                      .++||.++.  .++.++|++|+++|++++..   |..|.||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+
T Consensus        38 ~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~---d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdi-n~~d~~g~TpLh~A~  113 (446)
T PHA02946         38 YHILHAYCGIKGLDERFVEELLHRGYSPNET---DDDGNYPLHIASKINNNRIVAMLLTHGADP-NACDKQHKTPLYYLS  113 (446)
T ss_pred             ChHHHHHHHhcCCCHHHHHHHHHCcCCCCcc---CCCCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHH
Confidence            478898764  45789999999999987544   778999999999999999999999999998 899999999999998


Q ss_pred             hcC--CHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhC--chhHH
Q 048253           80 QKV--HVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHN--QLDAL  154 (323)
Q Consensus        80 ~~g--~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v  154 (323)
                      ..+  ..+++++|+++|+++....+..| |||| |+..++.+++++|++ .+++++..|..|+||||+|+..+  +.+++
T Consensus       114 ~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~-~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v  191 (446)
T PHA02946        114 GTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMS-IGFEARIVDKFGKNHIHRHLMSDNPKASTI  191 (446)
T ss_pred             HcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHh-ccccccccCCCCCCHHHHHHHhcCCCHHHH
Confidence            766  48999999999999955678889 9997 667799999999999 88999999999999999998755  46899


Q ss_pred             HHHHhCCCCCCCCcccccCCCcHHHHHHhhc--chhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhh
Q 048253          155 KFLLDNMDDPQFLNAEDDYGMTITQLAVAVK--LCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTL  232 (323)
Q Consensus       155 ~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~--~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A  232 (323)
                      ++|+++|++   ++.+|.+|+||||+|+..+  +.                 +++++|++ + ++++.+|..|.||||+|
T Consensus       192 ~~Ll~~Gad---in~~d~~G~TpLH~Aa~~~~~~~-----------------~iv~lLl~-g-adin~~d~~G~TpLh~A  249 (446)
T PHA02946        192 SWMMKLGIS---PSKPDHDGNTPLHIVCSKTVKNV-----------------DIINLLLP-S-TDVNKQNKFGDSPLTLL  249 (446)
T ss_pred             HHHHHcCCC---CcccCCCCCCHHHHHHHcCCCcH-----------------HHHHHHHc-C-CCCCCCCCCCCCHHHHH
Confidence            999999999   9999999999999999876  66                 89999985 6 89999999999999999


Q ss_pred             hhccCCCch-hhhHHHH
Q 048253          233 AQSKRDKKD-WEIEDWK  248 (323)
Q Consensus       233 ~~~~~~~~~-~~i~~~L  248 (323)
                      ++    .++ .+++++|
T Consensus       250 ~~----~~~~~~~~~~L  262 (446)
T PHA02946        250 IK----TLSPAHLINKL  262 (446)
T ss_pred             HH----hCChHHHHHHH
Confidence            99    544 3566555

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.6e-36  Score=278.50  Aligned_cols=208  Identities=20%  Similarity=0.177  Sum_probs=192.6

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHh
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQ   80 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~   80 (323)
                      |.||||.|+..|+.+++++|++.|++.+..   +..+.||||.|+..|+.+++++|++.++...+..+.+|.||||+|+.
T Consensus        35 g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~---~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~  111 (413)
T PHA02875         35 GISPIKLAMKFRDSEAIKLLMKHGAIPDVK---YPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATI  111 (413)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCcccc---CCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHH
Confidence            689999999999999999999999875332   56699999999999999999999999988767778899999999999


Q ss_pred             cCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHh
Q 048253           81 KVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLD  159 (323)
Q Consensus        81 ~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~  159 (323)
                      .|+.+++++|+++|+++ +.++..| ||||+|+..|+.+++++|++ .+++++.+|..|+||||+|+..|+.+++++|++
T Consensus       112 ~~~~~iv~~Ll~~gad~-~~~~~~g~tpLh~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~  189 (413)
T PHA02875        112 LKKLDIMKLLIARGADP-DIPNTDKFSPLHLAVMMGDIKGIELLID-HKACLDIEDCCGCTPLIIAMAKGDIAICKMLLD  189 (413)
T ss_pred             hCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99999999999999999 7888999 99999999999999999999 888999999999999999999999999999999


Q ss_pred             CCCCCCCCcccccCC-CcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhccccccccc---ccCCCchhhhhhh
Q 048253          160 NMDDPQFLNAEDDYG-MTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNAL---NANGFMALDTLAQ  234 (323)
Q Consensus       160 ~g~~~~~~~~~d~~g-~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~---d~~g~tpl~~A~~  234 (323)
                      +|++   ++..+..| .||+|+|+..++.                 +++++|+++| +|++..   +.+|.||++++..
T Consensus       190 ~ga~---~n~~~~~~~~t~l~~A~~~~~~-----------------~iv~~Ll~~g-ad~n~~~~~~~~~~t~l~~~~~  247 (413)
T PHA02875        190 SGAN---IDYFGKNGCVAALCYAIENNKI-----------------DIVRLFIKRG-ADCNIMFMIEGEECTILDMICN  247 (413)
T ss_pred             CCCC---CCcCCCCCCchHHHHHHHcCCH-----------------HHHHHHHHCC-cCcchHhhcCCCchHHHHHHHh
Confidence            9999   88888877 4899999999999                 9999999999 899876   6789999998765

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.9e-36  Score=284.16  Aligned_cols=244  Identities=19%  Similarity=0.137  Sum_probs=206.8

Q ss_pred             HHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcC---CHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcC
Q 048253            6 YEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLG---HVDFEGEIRRQKPELAGELDSNQFSALHIASQKV   82 (323)
Q Consensus         6 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g   82 (323)
                      ..++..++.++|++|++.|++++..   +..|.||||+|+..|   +.+++++|+++|+++ +.++..|+||||+|+..|
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~vn~~---~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadi-n~~~~~g~TpLh~A~~~~   94 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGADVNFR---GEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADV-NAPERCGFTPLHLYLYNA   94 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCCcccC---CCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcC
Confidence            4567889999999999999987544   777999999999999   999999999999998 999999999999999999


Q ss_pred             -CHHHHHHHHhcCCccccccCCCC-cHHHHHH--HhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhC--chhHHHH
Q 048253           83 -HVDKIKALLQVNPAWCFAGDLDG-SPLHLAA--MKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHN--QLDALKF  156 (323)
Q Consensus        83 -~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~--~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~  156 (323)
                       +.+++++|+++|+++ +.++..| ||||+|+  ..++.+++++|++ .+++++..|..|.||||+|+..+  +.+++++
T Consensus        95 ~~~~iv~lLl~~ga~i-n~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~-~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~  172 (471)
T PHA03095         95 TTLDVIKLLIKAGADV-NAKDKVGRTPLHVYLSGFNINPKVIRLLLR-KGADVNALDLYGMTPLAVLLKSRNANVELLRL  172 (471)
T ss_pred             CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhCCcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCCCHHHHHH
Confidence             599999999999999 8899999 9999999  5568999999999 88999999999999999999876  6899999


Q ss_pred             HHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcc--------------------hHHHHHHHhhcccc
Q 048253          157 LLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSK--------------------WGYVIRFLTTRTMI  216 (323)
Q Consensus       157 Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~--------------------~~~~v~~Ll~~g~~  216 (323)
                      |+++|++   ++..|..|+||||+|+........+++.|.+.+...                    ...+++.|++.| +
T Consensus       173 Ll~~g~~---~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g-~  248 (471)
T PHA03095        173 LIDAGAD---VYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAG-I  248 (471)
T ss_pred             HHHcCCC---CcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcC-C
Confidence            9999998   777899999999999987655567777776543221                    125677788877 8


Q ss_pred             cccccccCCCchhhhhhhccCCCchhhhHHHHhhh-------HHHHHHHHHHHH
Q 048253          217 EVNALNANGFMALDTLAQSKRDKKDWEIEDWKMIG-------WKKMRNALMVVA  263 (323)
Q Consensus       217 ~~~~~d~~g~tpl~~A~~~~~~~~~~~i~~~L~~~-------~~~~~~~~~~~~  263 (323)
                      ++|.+|..|+||||+|+.    .++.+++++|-..       +..+.++++.++
T Consensus       249 din~~d~~g~TpLh~A~~----~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~  298 (471)
T PHA03095        249 SINARNRYGQTPLHYAAV----FNNPRACRRLIALGADINAVSSDGNTPLSLMV  298 (471)
T ss_pred             CCCCcCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            888888888888888888    7888888887222       344556665554

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.9e-36  Score=277.57  Aligned_cols=247  Identities=18%  Similarity=0.152  Sum_probs=199.0

Q ss_pred             CcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhc
Q 048253            2 KSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQK   81 (323)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~   81 (323)
                      ...|+.|+..|+++.|+.|++.++....  ..+..|.||||.|+..|+.++|++|++.|+++ +..+..|.||||.|+..
T Consensus         2 ~~~l~~ai~~gd~~~v~~ll~~~~~~~n--~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~-n~~~~~~~t~L~~A~~~   78 (434)
T PHA02874          2 SQDLRMCIYSGDIEAIEKIIKNKGNCIN--ISVDETTTPLIDAIRSGDAKIVELFIKHGADI-NHINTKIPHPLLTAIKI   78 (434)
T ss_pred             cHHHHHHHhcCCHHHHHHHHHcCCCCCC--CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHc
Confidence            4578999999999999999987655322  23566999999999999999999999999998 88899999999999999


Q ss_pred             CCHHHHHHHHhcCCcc----------------------ccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCccccccccc
Q 048253           82 VHVDKIKALLQVNPAW----------------------CFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWG  138 (323)
Q Consensus        82 g~~~~v~~Ll~~~~~~----------------------~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g  138 (323)
                      |+.+++++|+++|++.                      .+.++..| ||||+|+..|+.+++++|++ .+++++..|..|
T Consensus        79 ~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~-~gad~n~~d~~g  157 (434)
T PHA02874         79 GAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFE-YGADVNIEDDNG  157 (434)
T ss_pred             CCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHh-CCCCCCCcCCCC
Confidence            9999999999887643                      14567789 99999999999999999999 889999999999


Q ss_pred             ccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhc-----------------
Q 048253          139 ETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHS-----------------  201 (323)
Q Consensus       139 ~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~-----------------  201 (323)
                      .||||+|+..|+.+++++|+++|++   ++.+|..|.||||+|+..|+.  +++++|.+++..                 
T Consensus       158 ~tpLh~A~~~~~~~iv~~Ll~~g~~---~n~~~~~g~tpL~~A~~~g~~--~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~  232 (434)
T PHA02874        158 CYPIHIAIKHNFFDIIKLLLEKGAY---ANVKDNNGESPLHNAAEYGDY--ACIKLLIDHGNHIMNKCKNGFTPLHNAII  232 (434)
T ss_pred             CCHHHHHHHCCcHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHcCCH--HHHHHHHhCCCCCcCCCCCCCCHHHHHHH
Confidence            9999999999999999999999998   889999999999999999988  566666554311                 


Q ss_pred             chHHHHHHHhhcccccccccccCCCchhhhhhhccCCCc-hhhhHHHHhhh-------HHHHHHHHHHHH
Q 048253          202 KWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDKK-DWEIEDWKMIG-------WKKMRNALMVVA  263 (323)
Q Consensus       202 ~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~~~~~~~-~~~i~~~L~~~-------~~~~~~~~~~~~  263 (323)
                      ...+.+++|+. + ++++.+|.+|+||||+|++    .+ +.+++++|-..       +..+.++++++.
T Consensus       233 ~~~~~i~~Ll~-~-~~in~~d~~G~TpLh~A~~----~~~~~~iv~~Ll~~gad~n~~d~~g~TpL~~A~  296 (434)
T PHA02874        233 HNRSAIELLIN-N-ASINDQDIDGSTPLHHAIN----PPCDIDIIDILLYHKADISIKDNKGENPIDTAF  296 (434)
T ss_pred             CChHHHHHHHc-C-CCCCCcCCCCCCHHHHHHh----cCCcHHHHHHHHHCcCCCCCCCCCCCCHHHHHH
Confidence            11244455543 3 5666667777777777766    33 45666666222       344556666554

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=5.4e-37  Score=277.01  Aligned_cols=204  Identities=21%  Similarity=0.174  Sum_probs=188.6

Q ss_pred             HHHHHHHhCCHHHHHHHhcc-CccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccC-CCCCcHHHHHHhc
Q 048253            4 MLYEAALKGCEPTLLELLQQ-DQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELD-SNQFSALHIASQK   81 (323)
Q Consensus         4 ~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~tpL~~A~~~   81 (323)
                      .++.|++.|+++.|+.|++. +..+   +..|.+|.|+||+|+.+++.+++++|+++++++ |..+ .-+.||||+|+++
T Consensus        47 ~~v~A~q~G~l~~v~~lve~~g~~v---~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadv-n~~gG~l~stPLHWAar~  122 (600)
T KOG0509|consen   47 DIVKATQYGELETVKELVESEGESV---NNPDREGVTLLHWAAINNRLDVARYLISHGADV-NAIGGVLGSTPLHWAARN  122 (600)
T ss_pred             hhhhHhhcchHHHHHHHHhhcCcCC---CCCCcCCccceeHHHHcCcHHHHHHHHHcCCCc-cccCCCCCCCcchHHHHc
Confidence            46789999999999999999 6554   344778999999999999999999999999998 6655 7899999999999


Q ss_pred             CCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhC
Q 048253           82 VHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDN  160 (323)
Q Consensus        82 g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~  160 (323)
                      |+..+|++|+++|+++ ..+|.+| +|+|.|++.|+.-++-+|+. .+++++.+|.+|+||||+|+.+|....+..||+.
T Consensus       123 G~~~vv~lLlqhGAdp-t~~D~~G~~~lHla~~~~~~~~vayll~-~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f  200 (600)
T KOG0509|consen  123 GHISVVDLLLQHGADP-TLKDKQGLTPLHLAAQFGHTALVAYLLS-KGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKF  200 (600)
T ss_pred             CcHHHHHHHHHcCCCC-ceecCCCCcHHHHHHHhCchHHHHHHHH-hcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHh
Confidence            9999999999999999 9999999 99999999999999999999 6799999999999999999999999989999999


Q ss_pred             CCCCCCCcccc-cCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhh
Q 048253          161 MDDPQFLNAED-DYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQ  234 (323)
Q Consensus       161 g~~~~~~~~~d-~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~  234 (323)
                      |+.   ++.+| ..|+||||+|+..|+.                 ++++ |+..++++.+.+|.+|+||+++|.+
T Consensus       201 ~a~---~~~~d~~~g~TpLHwa~~~gN~-----------------~~v~-Ll~~g~~~~d~~~~~g~tp~~LA~~  254 (600)
T KOG0509|consen  201 GAS---LLLTDDNHGNTPLHWAVVGGNL-----------------TAVK-LLLEGGADLDKTNTNGKTPFDLAQE  254 (600)
T ss_pred             ccc---ccccccccCCchHHHHHhcCCc-----------------ceEe-hhhhcCCcccccccCCCCHHHHHHH
Confidence            988   77777 8999999999999999                 9999 5555559999999999999999988

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=4.1e-36  Score=286.51  Aligned_cols=171  Identities=18%  Similarity=0.116  Sum_probs=149.4

Q ss_pred             CCcHHHHHHHh--CCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCC--HHHHHHHHHhCCCcccccCCCCCcHHH
Q 048253            1 MKSMLYEAALK--GCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGH--VDFEGEIRRQKPELAGELDSNQFSALH   76 (323)
Q Consensus         1 g~t~L~~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~--~~~v~~Ll~~~~~~~~~~~~~g~tpL~   76 (323)
                      |+||||.|+..  ++.+++++|+++|++++..   |..|.||||+|+..|+  .++|++|+++|+++ +.+|..|+||||
T Consensus       177 G~TpLH~A~~n~~~~~eIVklLLe~GADVN~k---D~~G~TPLH~Aa~~g~~~~eIVklLLe~GADV-N~kD~~G~TPLh  252 (764)
T PHA02716        177 GYGILHAYLGNMYVDIDILEWLCNNGVNVNLQ---NNHLITPLHTYLITGNVCASVIKKIIELGGDM-DMKCVNGMSPIM  252 (764)
T ss_pred             CCcHHHHHHHhccCCHHHHHHHHHcCCCCCCC---CCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCC-CCCCCCCCCHHH
Confidence            68999988654  6789999999999887544   7779999999999995  58999999999997 889999999998


Q ss_pred             HH-------------------------------------HhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHH--hCC
Q 048253           77 IA-------------------------------------SQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAM--KGR  116 (323)
Q Consensus        77 ~A-------------------------------------~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~--~g~  116 (323)
                      +|                                     ++.|+.+++++|++.|+++ +.+|..| ||||+|+.  .++
T Consensus       253 ~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdI-N~kD~~G~TPLH~Aaa~~~~~  331 (764)
T PHA02716        253 TYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKL-HYKDSAGRTCLHQYILRHNIS  331 (764)
T ss_pred             HHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCce-eccCCCCCCHHHHHHHHhCCC
Confidence            64                                     4568899999999999998 7889999 99998765  457


Q ss_pred             HHHHHHHHHhCCCcccccccccccHHHHHHh--------------hCchhHHHHHHhCCCCCCCCcccccCCCcHHHH
Q 048253          117 IDVLEELFRTRPLAASATMIWGETILHLCVK--------------HNQLDALKFLLDNMDDPQFLNAEDDYGMTITQL  180 (323)
Q Consensus       117 ~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~--------------~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~  180 (323)
                      .+++++|++ .+++++.+|..|+||||+|+.              .++.+++++|+++|++   ++.+|..|.||||.
T Consensus       332 ~eIVklLLe-~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GAD---In~kn~~G~TPLh~  405 (764)
T PHA02716        332 TDIIKLLHE-YGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGAD---ITAVNCLGYTPLTS  405 (764)
T ss_pred             chHHHHHHH-cCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCC---CCCcCCCCCChHHH
Confidence            899999998 789999999999999999875              3688999999999998   89999999999994

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.2e-35  Score=288.00  Aligned_cols=248  Identities=19%  Similarity=0.127  Sum_probs=199.5

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-----------------
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPEL-----------------   63 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-----------------   63 (323)
                      |+||||.|+..|+.++|++|+++|++++..   +..|.||||+|+..|+.+++++|++.+.++                 
T Consensus       178 G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~---~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~  254 (682)
T PHA02876        178 CITPIHYAAERGNAKMVNLLLSYGADVNII---ALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLE  254 (682)
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHCCCCcCcc---CCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHH
Confidence            679999999999999999999999876433   566888888888888888877776554321                 


Q ss_pred             -----------ccccCCCCCcHHHHHHhcCCH-HHHHHHHhcCCccccccCCCC-cHHHHHHHhC-CHHHHHHHHHhCCC
Q 048253           64 -----------AGELDSNQFSALHIASQKVHV-DKIKALLQVNPAWCFAGDLDG-SPLHLAAMKG-RIDVLEELFRTRPL  129 (323)
Q Consensus        64 -----------~~~~~~~g~tpL~~A~~~g~~-~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g-~~~~v~~Ll~~~~~  129 (323)
                                 ++..|..|+||||+|++.++. +++++|++.|+++ +.++..| ||||+|+..| +.++++.|+. .++
T Consensus       255 ~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadi-n~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~-~ga  332 (682)
T PHA02876        255 TSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADV-NAKNIKGETPLYLMAKNGYDTENIRTLIM-LGA  332 (682)
T ss_pred             HHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCCCHHHHHHHHH-cCC
Confidence                       255677889999999988886 5888899999888 7788888 9999999988 5888888888 788


Q ss_pred             cccccccccccHHHHHHhh-CchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhc-------
Q 048253          130 AASATMIWGETILHLCVKH-NQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHS-------  201 (323)
Q Consensus       130 ~~~~~~~~g~t~Lh~A~~~-g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~-------  201 (323)
                      +++..|..|.||||+|+.. ++.+++++|++.|++   ++.+|..|+||||+|+..++.  +++++|.+++..       
T Consensus       333 din~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gad---in~~d~~G~TpLh~Aa~~~~~--~iv~~Ll~~gad~~~~~~~  407 (682)
T PHA02876        333 DVNAADRLYITPLHQASTLDRNKDIVITLLELGAN---VNARDYCDKTPIHYAAVRNNV--VIINTLLDYGADIEALSQK  407 (682)
T ss_pred             CCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCC---CccCCCCCCCHHHHHHHcCCH--HHHHHHHHCCCCccccCCC
Confidence            8888888999999999875 468888889998888   888999999999999998877  888888775422       


Q ss_pred             ------------chHHHHHHHhhcccccccccccCCCchhhhhhhccCCCc-hhhhHHHHhhh-------HHHHHHHHHH
Q 048253          202 ------------KWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDKK-DWEIEDWKMIG-------WKKMRNALMV  261 (323)
Q Consensus       202 ------------~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~~~~~~~-~~~i~~~L~~~-------~~~~~~~~~~  261 (323)
                                  ....++++|+++| +++|.+|.+|+||||+|++    .+ ..+++++|...       +..+.+++.+
T Consensus       408 g~T~Lh~A~~~~~~~~~vk~Ll~~g-adin~~d~~G~TpLh~Aa~----~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~  482 (682)
T PHA02876        408 IGTALHFALCGTNPYMSVKTLIDRG-ANVNSKNKDLSTPLHYACK----KNCKLDVIEMLLDNGADVNAINIQNQYPLLI  482 (682)
T ss_pred             CCchHHHHHHcCCHHHHHHHHHhCC-CCCCcCCCCCChHHHHHHH----hCCcHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence                        2346789999988 8999999999999999998    55 57888888332       3445556655


Q ss_pred             HH
Q 048253          262 VA  263 (323)
Q Consensus       262 ~~  263 (323)
                      ++
T Consensus       483 a~  484 (682)
T PHA02876        483 AL  484 (682)
T ss_pred             HH
Confidence            44

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=2e-35  Score=281.83  Aligned_cols=182  Identities=15%  Similarity=0.070  Sum_probs=156.6

Q ss_pred             HhCCHHHHHHHhccC-ccccccccCCCCCCCHHHHHHHc--CCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCC--H
Q 048253           10 LKGCEPTLLELLQQD-QLIIGRVGVNCLSEFPLHAAALL--GHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVH--V   84 (323)
Q Consensus        10 ~~g~~~~v~~Ll~~~-~~~~~~~~~~~~g~t~Lh~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~--~   84 (323)
                      +.++.+++++|+++| ++++...  |..|.||||+|+..  ++.+++++|+++|+++ +.+|..|.||||+|++.|+  .
T Consensus       151 ~~v~leiVk~LLe~G~ADIN~~~--d~~G~TpLH~A~~n~~~~~eIVklLLe~GADV-N~kD~~G~TPLH~Aa~~g~~~~  227 (764)
T PHA02716        151 RGIDLDLIKYMVDVGIVNLNYVC--KKTGYGILHAYLGNMYVDIDILEWLCNNGVNV-NLQNNHLITPLHTYLITGNVCA  227 (764)
T ss_pred             cCCCHHHHHHHHHCCCCCccccc--CCCCCcHHHHHHHhccCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCCCH
Confidence            569999999999999 7764331  56699999998754  6799999999999998 8999999999999999995  4


Q ss_pred             HHHHHHHhcCCccccccCCCC-cHHHHH-------------------------------------HHhCCHHHHHHHHHh
Q 048253           85 DKIKALLQVNPAWCFAGDLDG-SPLHLA-------------------------------------AMKGRIDVLEELFRT  126 (323)
Q Consensus        85 ~~v~~Ll~~~~~~~~~~~~~g-t~L~~A-------------------------------------~~~g~~~~v~~Ll~~  126 (323)
                      +++++|+++|+++ +.++..| ||||+|                                     ++.|+.+++++|++ 
T Consensus       228 eIVklLLe~GADV-N~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe-  305 (764)
T PHA02716        228 SVIKKIIELGGDM-DMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQ-  305 (764)
T ss_pred             HHHHHHHHcCCCC-CCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHh-
Confidence            9999999999999 8899999 999975                                     44588999999999 


Q ss_pred             CCCcccccccccccHHHHHHh--hCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhh------------cchhhhHH
Q 048253          127 RPLAASATMIWGETILHLCVK--HNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAV------------KLCFQNLV  192 (323)
Q Consensus       127 ~~~~~~~~~~~g~t~Lh~A~~--~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~------------~~~~~~~~  192 (323)
                      .+++++.+|..|+||||+|+.  .++.+++++|+++|++   ++.+|..|+||||+|+..            +....+++
T Consensus       306 ~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GAD---IN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVV  382 (764)
T PHA02716        306 PGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGND---LNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVI  382 (764)
T ss_pred             CCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCC---CccCCCCCCCHHHHHHHhhhhhccccccccccChHHHH
Confidence            889999999999999999874  4688999999999999   999999999999998752            11244888


Q ss_pred             HHHHHHh
Q 048253          193 ELVEEYC  199 (323)
Q Consensus       193 ~~l~~~~  199 (323)
                      ++|.+.+
T Consensus       383 klLL~~G  389 (764)
T PHA02716        383 QCLISLG  389 (764)
T ss_pred             HHHHHCC
Confidence            8887653

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.2e-34  Score=271.01  Aligned_cols=220  Identities=14%  Similarity=0.117  Sum_probs=184.1

Q ss_pred             CCcHHHHHHHhC--CHHHHHHHhccCccccccccCCCCCCCHHHHHHHcC------CHHHHHHHHHhCCCcccccCCCCC
Q 048253            1 MKSMLYEAALKG--CEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLG------HVDFEGEIRRQKPELAGELDSNQF   72 (323)
Q Consensus         1 g~t~L~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g------~~~~v~~Ll~~~~~~~~~~~~~g~   72 (323)
                      |+||||.++..+  +.++|++|+++|++++..   + .+.||||.|+.++      +.+++++|+++|+++ +.+|..|.
T Consensus        35 g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~---~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~  109 (494)
T PHA02989         35 GNSILLLYLKRKDVKIKIVKLLIDNGADVNYK---G-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADI-NLKTFNGV  109 (494)
T ss_pred             CCCHHHHHHhcCCCChHHHHHHHHcCCCccCC---C-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCC-CCCCCCCC
Confidence            678887766553  689999999999988754   3 4789999887754      468999999999997 88899999


Q ss_pred             cHHHHHHhc---CCHHHHHHHHhcCCccccccCCCC-cHHHHHHHh--CCHHHHHHHHHhCCCcccc-cccccccHHHHH
Q 048253           73 SALHIASQK---VHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMK--GRIDVLEELFRTRPLAASA-TMIWGETILHLC  145 (323)
Q Consensus        73 tpL~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~--g~~~~v~~Ll~~~~~~~~~-~~~~g~t~Lh~A  145 (323)
                      ||||.|+..   ++.+++++|+++|+++.+.++..| ||||+|+..  ++.+++++|++ .|++++. .+..|.||||+|
T Consensus       110 tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~-~Gadi~~~~~~~g~tpL~~a  188 (494)
T PHA02989        110 SPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLS-FGVNLFEKTSLYGLTPMNIY  188 (494)
T ss_pred             cHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHH-cCCCccccccccCCChHHHH
Confidence            999988755   678999999999998855778888 999998764  57899999998 7788877 677899999998


Q ss_pred             HhhC----chhHHHHHHhCCCCCC-----------------------------------CCcccccCCCcHHHHHHhhcc
Q 048253          146 VKHN----QLDALKFLLDNMDDPQ-----------------------------------FLNAEDDYGMTITQLAVAVKL  186 (323)
Q Consensus       146 ~~~g----~~~~v~~Ll~~g~~~~-----------------------------------~~~~~d~~g~t~Lh~A~~~~~  186 (323)
                      +.++    +.+++++|+++|++..                                   .+|.+|..|+||||+|+..++
T Consensus       189 ~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~  268 (494)
T PHA02989        189 LRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDN  268 (494)
T ss_pred             HhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcC
Confidence            7654    8899999999887521                                   145677789999999999998


Q ss_pred             hhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhhccCCCchhhhHHHH
Q 048253          187 CFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       187 ~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~~~~~~~~~~i~~~L  248 (323)
                      .                 +++++|++.| +|++.+|..|.||||+|++    .++.+++++|
T Consensus       269 ~-----------------~~v~~LL~~G-adin~~d~~G~TpL~~A~~----~~~~~iv~~L  308 (494)
T PHA02989        269 Y-----------------EAFNYLLKLG-DDIYNVSKDGDTVLTYAIK----HGNIDMLNRI  308 (494)
T ss_pred             H-----------------HHHHHHHHcC-CCccccCCCCCCHHHHHHH----cCCHHHHHHH
Confidence            8                 9999999998 8999999999999999999    8899999887

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=6.9e-35  Score=268.48  Aligned_cols=219  Identities=22%  Similarity=0.210  Sum_probs=136.3

Q ss_pred             CcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHH-----hCCCcccccCCCCCcHHH
Q 048253            2 KSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRR-----QKPELAGELDSNQFSALH   76 (323)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~-----~~~~~~~~~~~~g~tpL~   76 (323)
                      .||||.||..++.|..+.|++.++++..   .|.+|.+|+|.|+++|..++.+.++.     +...+ +.-+..|.||||
T Consensus       155 ~TpLh~A~~~~~~E~~k~Li~~~a~~~K---~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~i-n~~~n~~~~pLh  230 (929)
T KOG0510|consen  155 FTPLHLAARKNKVEAKKELINKGADPCK---SDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHI-NFDNNEKATPLH  230 (929)
T ss_pred             CchhhHHHhcChHHHHHHHHhcCCCCCc---ccCcCCchHHHHHHhcchhhhhhhhccccchhhccc-ccccCCCCcchh
Confidence            4555555555555555555555555422   24445555555555555555555554     33333 555556666666


Q ss_pred             HHHhcCCHHHHHHHHhcCCccc--------------cccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccH
Q 048253           77 IASQKVHVDKIKALLQVNPAWC--------------FAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETI  141 (323)
Q Consensus        77 ~A~~~g~~~~v~~Ll~~~~~~~--------------~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~  141 (323)
                      .|+..|++++++.+++.|....              +..|.+| ||||+|++.|+++.++.|+. .|++++.++.++.||
T Consensus       231 lAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~-~Ga~I~~kn~d~~sp  309 (929)
T KOG0510|consen  231 LAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLG-FGASINSKNKDEESP  309 (929)
T ss_pred             hhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHH-cCCcccccCCCCCCc
Confidence            6666666666666665544322              2235556 66666666666666666666 566666666666666


Q ss_pred             HHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhccccccc--
Q 048253          142 LHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVN--  219 (323)
Q Consensus       142 Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~--  219 (323)
                      ||.|+..|+..+|+.||+ -.+..+.|..|..|+||||+|++.|+.                 ++++.|++.| +...  
T Consensus       310 LH~AA~yg~~ntv~rLL~-~~~~rllne~D~~g~tpLHlaa~~gH~-----------------~v~qlLl~~G-A~~~~~  370 (929)
T KOG0510|consen  310 LHFAAIYGRINTVERLLQ-ESDTRLLNESDLHGMTPLHLAAKSGHD-----------------RVVQLLLNKG-ALFLNM  370 (929)
T ss_pred             hHHHHHcccHHHHHHHHh-CcCccccccccccCCCchhhhhhcCHH-----------------HHHHHHHhcC-hhhhcc
Confidence            666666666666666666 223334566666666666666666666                 9999999998 5554  


Q ss_pred             -ccccCCCchhhhhhhccCCCchhhhHHHH
Q 048253          220 -ALNANGFMALDTLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       220 -~~d~~g~tpl~~A~~~~~~~~~~~i~~~L  248 (323)
                       ..|.+|.||||+|+.    .|+..+++.|
T Consensus       371 ~e~D~dg~TaLH~Aa~----~g~~~av~~L  396 (929)
T KOG0510|consen  371 SEADSDGNTALHLAAK----YGNTSAVQKL  396 (929)
T ss_pred             cccccCCchhhhHHHH----hccHHHHHHH
Confidence             459999999999999    8888888888

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.2e-34  Score=269.49  Aligned_cols=219  Identities=14%  Similarity=0.089  Sum_probs=181.0

Q ss_pred             CcHHHHHHHh--CCHHHHHHHhccCccccccccCCCCCCCHHHHHHHc-----CCHHHHHHHHHhCCCcccccCCCCCcH
Q 048253            2 KSMLYEAALK--GCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALL-----GHVDFEGEIRRQKPELAGELDSNQFSA   74 (323)
Q Consensus         2 ~t~L~~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~-----g~~~~v~~Ll~~~~~~~~~~~~~g~tp   74 (323)
                      .|+++.+...  ++.++|++|+++|++++..   |..|.||||.|+.+     ++.+++++|+++|+++ +.+|..|+||
T Consensus        37 ~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~---d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gadi-N~~d~~G~Tp  112 (489)
T PHA02798         37 YSIFQKYLQRDSPSTDIVKLFINLGANVNGL---DNEYSTPLCTILSNIKDYKHMLDIVKILIENGADI-NKKNSDGETP  112 (489)
T ss_pred             chHHHHHHhCCCCCHHHHHHHHHCCCCCCCC---CCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCC-CCCCCCcCcH
Confidence            4555544444  4788899999988887665   56688999888764     6688899999988887 8888889999


Q ss_pred             HHHHHhcC---CHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCC---HHHHHHHHHhCCCcccccc-cccccHHHHHH
Q 048253           75 LHIASQKV---HVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGR---IDVLEELFRTRPLAASATM-IWGETILHLCV  146 (323)
Q Consensus        75 L~~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~---~~~v~~Ll~~~~~~~~~~~-~~g~t~Lh~A~  146 (323)
                      ||+|+..+   +.+++++|+++|+++ +.++..| ||||+|++.++   .+++++|++ .+++++..+ ..|.||||.++
T Consensus       113 Lh~a~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~-~gadin~~~~~~~~t~Lh~~~  190 (489)
T PHA02798        113 LYCLLSNGYINNLEILLFMIENGADT-TLLDKDGFTMLQVYLQSNHHIDIEIIKLLLE-KGVDINTHNNKEKYDTLHCYF  190 (489)
T ss_pred             HHHHHHcCCcChHHHHHHHHHcCCCc-cccCCCCCcHHHHHHHcCCcchHHHHHHHHH-hCCCcccccCcCCCcHHHHHH
Confidence            99888875   678889999988888 7888888 99999888887   888888888 678887764 46888888887


Q ss_pred             hh----CchhHHHHHHhCCCCCC------------------------------------CCcccccCCCcHHHHHHhhcc
Q 048253          147 KH----NQLDALKFLLDNMDDPQ------------------------------------FLNAEDDYGMTITQLAVAVKL  186 (323)
Q Consensus       147 ~~----g~~~~v~~Ll~~g~~~~------------------------------------~~~~~d~~g~t~Lh~A~~~~~  186 (323)
                      ..    ++.+++++|+++|++..                                    .+|.+|..|+||||+|+..++
T Consensus       191 ~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~  270 (489)
T PHA02798        191 KYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNN  270 (489)
T ss_pred             HhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCc
Confidence            54    46888888888775321                                    266788899999999999999


Q ss_pred             hhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhhccCCCchhhhHHHH
Q 048253          187 CFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       187 ~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~~~~~~~~~~i~~~L  248 (323)
                      .                 +++++|++.| +|++.+|..|+|||++|++    .++.++++.|
T Consensus       271 ~-----------------~~v~~LL~~G-Adin~~d~~G~TpL~~A~~----~~~~~iv~~l  310 (489)
T PHA02798        271 R-----------------KIFEYLLQLG-GDINIITELGNTCLFTAFE----NESKFIFNSI  310 (489)
T ss_pred             H-----------------HHHHHHHHcC-CcccccCCCCCcHHHHHHH----cCcHHHHHHH
Confidence            9                 9999999998 9999999999999999999    8888888877

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.1e-34  Score=277.46  Aligned_cols=207  Identities=21%  Similarity=0.181  Sum_probs=185.7

Q ss_pred             CCcHHHHHHHhCCH-HHHHHHhccCccccccccCCCCCCCHHHHHHHcC-CHHHHHHHHHhCCCcccccCCCCCcHHHHH
Q 048253            1 MKSMLYEAALKGCE-PTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLG-HVDFEGEIRRQKPELAGELDSNQFSALHIA   78 (323)
Q Consensus         1 g~t~L~~A~~~g~~-~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A   78 (323)
                      |+||||.|+..|+. ++++.|++.+++++..   |..|.||||+|+..| +.++++.|+..|+++ +.+|..|+||||+|
T Consensus       273 g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~---d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadi-n~~d~~g~TpLh~A  348 (682)
T PHA02876        273 KNTPLHHASQAPSLSRLVPKLLERGADVNAK---NIKGETPLYLMAKNGYDTENIRTLIMLGADV-NAADRLYITPLHQA  348 (682)
T ss_pred             CCCHHHHHHhCCCHHHHHHHHHHCCCCCCCc---CCCCCCHHHHHHHhCCCHHHHHHHHHcCCCC-CCcccCCCcHHHHH
Confidence            68999999999986 5889999999876443   677999999999999 589999999999988 88999999999999


Q ss_pred             Hhc-CCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCc-hhHHH
Q 048253           79 SQK-VHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQ-LDALK  155 (323)
Q Consensus        79 ~~~-g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~-~~~v~  155 (323)
                      +.. ++.+++++|++.|+++ +.++..| ||||+|+..|+.+++++|++ .+++++..+..|.||||+|+..++ ..+++
T Consensus       349 ~~~~~~~~iv~lLl~~gadi-n~~d~~G~TpLh~Aa~~~~~~iv~~Ll~-~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk  426 (682)
T PHA02876        349 STLDRNKDIVITLLELGANV-NARDYCDKTPIHYAAVRNNVVIINTLLD-YGADIEALSQKIGTALHFALCGTNPYMSVK  426 (682)
T ss_pred             HHhCCcHHHHHHHHHcCCCC-ccCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCccccCCCCCchHHHHHHcCCHHHHHH
Confidence            885 4788999999999998 8889999 99999999999999999999 888999999999999999987665 56789


Q ss_pred             HHHhCCCCCCCCcccccCCCcHHHHHHhhc-chhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhh
Q 048253          156 FLLDNMDDPQFLNAEDDYGMTITQLAVAVK-LCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQ  234 (323)
Q Consensus       156 ~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~-~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~  234 (323)
                      +|+++|++   +|.+|.+|+||||+|+..+ +.                 +++++|++.| ++++.+|..|.||+++|+.
T Consensus       427 ~Ll~~gad---in~~d~~G~TpLh~Aa~~~~~~-----------------~iv~lLl~~G-ad~n~~d~~g~tpl~~a~~  485 (682)
T PHA02876        427 TLIDRGAN---VNSKNKDLSTPLHYACKKNCKL-----------------DVIEMLLDNG-ADVNAINIQNQYPLLIALE  485 (682)
T ss_pred             HHHhCCCC---CCcCCCCCChHHHHHHHhCCcH-----------------HHHHHHHHCC-CCCCCCCCCCCCHHHHHHH
Confidence            99999988   9999999999999999876 57                 9999999998 9999999999999999988

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=2.9e-34  Score=264.35  Aligned_cols=233  Identities=18%  Similarity=0.114  Sum_probs=181.3

Q ss_pred             CcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhc
Q 048253            2 KSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQK   81 (323)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~   81 (323)
                      .+|+|.|+..|+.++++.|++.+.+++-   .|..|.||||.||..++.|..+.|++.++++ .+.|.+|.+|+|.|++.
T Consensus       122 ~aplh~A~~~~~~s~L~~Ll~~~~dvnl---~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~-~K~~~~~~~~iH~aa~s  197 (929)
T KOG0510|consen  122 NAPLHLAADSGNYSCLKLLLDYGADVNL---EDENGFTPLHLAARKNKVEAKKELINKGADP-CKSDIDGNFPIHEAARS  197 (929)
T ss_pred             cCchhhccccchHHHHHHHHHhcCCccc---cccCCCchhhHHHhcChHHHHHHHHhcCCCC-CcccCcCCchHHHHHHh
Confidence            4677777777777777777777755432   3666777888888888777777777777777 77777778888888888


Q ss_pred             CCHHHHHHHHh-----cCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCc--------------ccccccccccH
Q 048253           82 VHVDKIKALLQ-----VNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLA--------------ASATMIWGETI  141 (323)
Q Consensus        82 g~~~~v~~Ll~-----~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~--------------~~~~~~~g~t~  141 (323)
                      |..|+.+..+.     ++..+ +.-+..+ ||||.|+..|++++++.+++....+              ++..|.+|.||
T Consensus       198 ~s~e~mEi~l~~~g~~r~~~i-n~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tp  276 (929)
T KOG0510|consen  198 GSKECMEIFLPEHGYERQTHI-NFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTP  276 (929)
T ss_pred             cchhhhhhhhccccchhhccc-ccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCch
Confidence            88888777777     45555 5566677 8888888888888888888832211              33457888999


Q ss_pred             HHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhh-cccccccc
Q 048253          142 LHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTT-RTMIEVNA  220 (323)
Q Consensus       142 Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~-~g~~~~~~  220 (323)
                      ||+|++.|+.++++.|+..|++   ++.++.++.||||.|+..|+.                 ..|+.|++ .+-...|.
T Consensus       277 LH~a~r~G~~~svd~Ll~~Ga~---I~~kn~d~~spLH~AA~yg~~-----------------ntv~rLL~~~~~rllne  336 (929)
T KOG0510|consen  277 LHYAARQGGPESVDNLLGFGAS---INSKNKDEESPLHFAAIYGRI-----------------NTVERLLQESDTRLLNE  336 (929)
T ss_pred             HHHHHHcCChhHHHHHHHcCCc---ccccCCCCCCchHHHHHcccH-----------------HHHHHHHhCcCcccccc
Confidence            9999999999999999999988   888889999999999999998                 99999998 55567888


Q ss_pred             cccCCCchhhhhhhccCCCchhhhHHHHhhh----------HHHHHHHHHHHH
Q 048253          221 LNANGFMALDTLAQSKRDKKDWEIEDWKMIG----------WKKMRNALMVVA  263 (323)
Q Consensus       221 ~d~~g~tpl~~A~~~~~~~~~~~i~~~L~~~----------~~~~~~~~~~~~  263 (323)
                      .|-.|.||+|+|++    .|+..++++|-..          +..+.++++.++
T Consensus       337 ~D~~g~tpLHlaa~----~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa  385 (929)
T KOG0510|consen  337 SDLHGMTPLHLAAK----SGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAA  385 (929)
T ss_pred             ccccCCCchhhhhh----cCHHHHHHHHHhcChhhhcccccccCCchhhhHHH
Confidence            89999999999998    9999999998221          445667777776

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.9e-33  Score=260.96  Aligned_cols=229  Identities=20%  Similarity=0.184  Sum_probs=181.8

Q ss_pred             HHHHHHhCCHHHHHHHhccCc-cccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCC
Q 048253            5 LYEAALKGCEPTLLELLQQDQ-LIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVH   83 (323)
Q Consensus         5 L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~   83 (323)
                      |..+.+..+.+-+...++.-. ........+..+.||||+|+..|+.++|++|+++|+++ +.+|..|+||||+||..|+
T Consensus         4 ~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~gadv-n~~d~~g~TpLh~A~~~g~   82 (477)
T PHA02878          4 LYKSMYTDNYETILKYIEYIDHTENYSTSASLIPFIPLHQAVEARNLDVVKSLLTRGHNV-NQPDHRDLTPLHIICKEPN   82 (477)
T ss_pred             HHHHHHhccHHHHHHHHHHHhhhhhhcCcccccCcchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCcc
Confidence            556677777544444444311 11111223446889999999999999999999999998 8999999999999998765


Q ss_pred             HH----------------------------------------------------------------HHHHHHhcCCcccc
Q 048253           84 VD----------------------------------------------------------------KIKALLQVNPAWCF   99 (323)
Q Consensus        84 ~~----------------------------------------------------------------~v~~Ll~~~~~~~~   99 (323)
                      .+                                                                ++++|+++|+++ +
T Consensus        83 ~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadi-n  161 (477)
T PHA02878         83 KLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADI-N  161 (477)
T ss_pred             HhHHHHHHHHHhccccccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCC-C
Confidence            43                                                                556666677777 6


Q ss_pred             ccCCC-C-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcH
Q 048253          100 AGDLD-G-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTI  177 (323)
Q Consensus       100 ~~~~~-g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~  177 (323)
                      ..+.. | ||||+|+..|+.+++++|++ .+++++..|..|+||||+|+..|+.+++++|+++|++   ++.+|..|+||
T Consensus       162 ~~~~~~g~tpLh~A~~~~~~~iv~~Ll~-~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~---in~~d~~g~Tp  237 (477)
T PHA02878        162 MKDRHKGNTALHYATENKDQRLTELLLS-YGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGAS---TDARDKCGNTP  237 (477)
T ss_pred             ccCCCCCCCHHHHHHhCCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCC---CCCCCCCCCCH
Confidence            66666 8 99999999999999999999 7889999999999999999999999999999999998   89999999999


Q ss_pred             HHHHHhh-cchhhhHHHHHHHHhhcchHHHHHHHhhccccccccccc-CCCchhhhhhhccCCCchhhhHHHHhhh----
Q 048253          178 TQLAVAV-KLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNA-NGFMALDTLAQSKRDKKDWEIEDWKMIG----  251 (323)
Q Consensus       178 Lh~A~~~-~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~-~g~tpl~~A~~~~~~~~~~~i~~~L~~~----  251 (323)
                      ||+|+.. ++.                 +++++|+++| ++++.++. .|.||||+|..      +.+++++|-..    
T Consensus       238 Lh~A~~~~~~~-----------------~iv~~Ll~~g-advn~~~~~~g~TpLh~A~~------~~~~v~~Ll~~gadi  293 (477)
T PHA02878        238 LHISVGYCKDY-----------------DILKLLLEHG-VDVNAKSYILGLTALHSSIK------SERKLKLLLEYGADI  293 (477)
T ss_pred             HHHHHHhcCCH-----------------HHHHHHHHcC-CCCCccCCCCCCCHHHHHcc------CHHHHHHHHHCCCCC
Confidence            9999975 677                 9999999998 89999886 79999999944      34677777222    


Q ss_pred             ---HHHHHHHHHHHH
Q 048253          252 ---WKKMRNALMVVA  263 (323)
Q Consensus       252 ---~~~~~~~~~~~~  263 (323)
                         +..+.++++.+.
T Consensus       294 n~~d~~g~TpL~~A~  308 (477)
T PHA02878        294 NSLNSYKLTPLSSAV  308 (477)
T ss_pred             CCcCCCCCCHHHHHH
Confidence               344556666554

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.6e-32  Score=258.27  Aligned_cols=243  Identities=17%  Similarity=0.136  Sum_probs=197.2

Q ss_pred             HHHHHHH---hCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHc--CCHHHHHHHHHhCCCcccccCCCCCcHHHHH
Q 048253            4 MLYEAAL---KGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALL--GHVDFEGEIRRQKPELAGELDSNQFSALHIA   78 (323)
Q Consensus         4 ~L~~A~~---~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A   78 (323)
                      +||.-+.   ..+.++|++|++.|++++..    ..|.||||.++..  ++.++|++|+++|+++ +.++ .+.||||.|
T Consensus         3 ~l~~y~~~~~~~~~~~v~~LL~~GadvN~~----~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdv-n~~~-~~~tpL~~a   76 (494)
T PHA02989          3 SLYEYILYSDTVDKNALEFLLRTGFDVNEE----YRGNSILLLYLKRKDVKIKIVKLLIDNGADV-NYKG-YIETPLCAV   76 (494)
T ss_pred             HHHHHHHcCCcCcHHHHHHHHHcCCCcccc----cCCCCHHHHHHhcCCCChHHHHHHHHcCCCc-cCCC-CCCCcHHHH
Confidence            4555444   47899999999999987544    3489999766554  3799999999999998 7766 579999999


Q ss_pred             HhcC------CHHHHHHHHhcCCccccccCCCC-cHHHHHHHh---CCHHHHHHHHHhCCCcc-cccccccccHHHHHHh
Q 048253           79 SQKV------HVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMK---GRIDVLEELFRTRPLAA-SATMIWGETILHLCVK  147 (323)
Q Consensus        79 ~~~g------~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~---g~~~~v~~Ll~~~~~~~-~~~~~~g~t~Lh~A~~  147 (323)
                      +..+      +.+++++|+++|+++ +.++..| ||||.|+..   ++.+++++|++ .|+++ +..|..|+||||+|+.
T Consensus        77 ~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~-~Gadin~~~d~~g~tpLh~a~~  154 (494)
T PHA02989         77 LRNREITSNKIKKIVKLLLKFGADI-NLKTFNGVSPIVCFIYNSNINNCDMLRFLLS-KGINVNDVKNSRGYNLLHMYLE  154 (494)
T ss_pred             HhccCcchhhHHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHhcccCcHHHHHHHHH-CCCCcccccCCCCCCHHHHHHH
Confidence            8754      478999999999999 8899999 999998765   67999999999 89999 8899999999999876


Q ss_pred             h--CchhHHHHHHhCCCCCCCCcc-cccCCCcHHHHHHhhcc--hhhhHHHHHHHHhhc---------------------
Q 048253          148 H--NQLDALKFLLDNMDDPQFLNA-EDDYGMTITQLAVAVKL--CFQNLVELVEEYCHS---------------------  201 (323)
Q Consensus       148 ~--g~~~~v~~Ll~~g~~~~~~~~-~d~~g~t~Lh~A~~~~~--~~~~~~~~l~~~~~~---------------------  201 (323)
                      .  ++.+++++|+++|++   ++. .+..|.||||+|+..+.  ...+++++|.+.+..                     
T Consensus       155 ~~~~~~~iv~~Ll~~Gad---i~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~  231 (494)
T PHA02989        155 SFSVKKDVIKILLSFGVN---LFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKI  231 (494)
T ss_pred             hccCCHHHHHHHHHcCCC---ccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchh
Confidence            4  589999999999999   777 68899999999987652  234888888776432                     


Q ss_pred             ---chHHHHHHHhhcccccccccccCCCchhhhhhhccCCCchhhhHHHHhhh-------HHHHHHHHHHHH
Q 048253          202 ---KWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDKKDWEIEDWKMIG-------WKKMRNALMVVA  263 (323)
Q Consensus       202 ---~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~~~~~~~~~~i~~~L~~~-------~~~~~~~~~~~~  263 (323)
                         +..+++++|+. + +++|.+|..|+||||+|++    .++.+++++|-..       +..+.++++.++
T Consensus       232 ~~~~~~~il~~l~~-~-advn~~d~~G~TpL~~Aa~----~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~  297 (494)
T PHA02989        232 LSKKEFKVLNFILK-Y-IKINKKDKKGFNPLLISAK----VDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAI  297 (494)
T ss_pred             hcccchHHHHHHHh-C-CCCCCCCCCCCCHHHHHHH----hcCHHHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence               12356666654 5 8999999999999999999    8899999998322       345667777665

>PHA02859 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.3e-31  Score=223.72  Aligned_cols=173  Identities=16%  Similarity=0.114  Sum_probs=152.5

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcC--CHHHHHHHHhcCCccccccC-CCC-cHHHH
Q 048253           35 CLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKV--HVDKIKALLQVNPAWCFAGD-LDG-SPLHL  110 (323)
Q Consensus        35 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g--~~~~v~~Ll~~~~~~~~~~~-~~g-t~L~~  110 (323)
                      ..+.||||+|+..|+.++|+.|++.    .+..|..|.||||+|+..+  +.+++++|+++|+++ +.++ ..| ||||+
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv-n~~~~~~g~TpLh~   93 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKF----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADV-NFKTRDNNLSALHH   93 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHh----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCC-CccCCCCCCCHHHH
Confidence            3478999999999999999999975    2567889999999999754  899999999999999 6665 578 99999


Q ss_pred             HHHh---CCHHHHHHHHHhCCCcccccccccccHHHHHHh--hCchhHHHHHHhCCCCCCCCcccccCCCcHHHH-HHhh
Q 048253          111 AAMK---GRIDVLEELFRTRPLAASATMIWGETILHLCVK--HNQLDALKFLLDNMDDPQFLNAEDDYGMTITQL-AVAV  184 (323)
Q Consensus       111 A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~--~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~-A~~~  184 (323)
                      |+..   ++.+++++|++ .+++++.+|..|.||||+|+.  .++.+++++|+++|++   ++.+|.+|+||||. |+..
T Consensus        94 a~~~~~~~~~eiv~~Ll~-~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gad---in~~d~~g~t~Lh~~a~~~  169 (209)
T PHA02859         94 YLSFNKNVEPEILKILID-SGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVS---FLNKDFDNNNILYSYILFH  169 (209)
T ss_pred             HHHhCccccHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC---cccccCCCCcHHHHHHHhc
Confidence            8764   47999999998 899999999999999999876  4689999999999998   89999999999995 5667


Q ss_pred             cchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhh
Q 048253          185 KLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQ  234 (323)
Q Consensus       185 ~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~  234 (323)
                      ++.                 +++++|+++| ++++.+|..|+||+++|..
T Consensus       170 ~~~-----------------~iv~~Ll~~G-adi~~~d~~g~tpl~la~~  201 (209)
T PHA02859        170 SDK-----------------KIFDFLTSLG-IDINETNKSGYNCYDLIKF  201 (209)
T ss_pred             CCH-----------------HHHHHHHHcC-CCCCCCCCCCCCHHHHHhh
Confidence            788                 9999999998 8999999999999999987

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.5e-31  Score=251.54  Aligned_cols=234  Identities=14%  Similarity=0.122  Sum_probs=190.8

Q ss_pred             CHHHHHHHhccCccccccccCCCCCCCHHHHHHHc--CCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhc-----CCHH
Q 048253           13 CEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALL--GHVDFEGEIRRQKPELAGELDSNQFSALHIASQK-----VHVD   85 (323)
Q Consensus        13 ~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~-----g~~~   85 (323)
                      +.+.|+.|++.+.. ++.    ..+.|+++.+...  ++.++|++|+++|+++ +.+|..|.||||.|+..     ++.+
T Consensus        17 ~~~~v~~ll~~~~~-~~~----~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpL~~~~~n~~~~~~~~~   90 (489)
T PHA02798         17 KLSTVKLLIKSCNP-NEI----VNEYSIFQKYLQRDSPSTDIVKLFINLGANV-NGLDNEYSTPLCTILSNIKDYKHMLD   90 (489)
T ss_pred             cHHHHHHHHhcCCh-hhh----cccchHHHHHHhCCCCCHHHHHHHHHCCCCC-CCCCCCCCChHHHHHHhHHhHHhHHH
Confidence            47799999986532 222    3377877744444  4799999999999998 89999999999999864     6789


Q ss_pred             HHHHHHhcCCccccccCCCC-cHHHHHHHhC---CHHHHHHHHHhCCCcccccccccccHHHHHHhhCc---hhHHHHHH
Q 048253           86 KIKALLQVNPAWCFAGDLDG-SPLHLAAMKG---RIDVLEELFRTRPLAASATMIWGETILHLCVKHNQ---LDALKFLL  158 (323)
Q Consensus        86 ~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~---~~~v~~Ll  158 (323)
                      ++++|+++|+++ +.++..| ||||+|+..+   +.+++++|++ .|++++..|..|.||||+|+..++   .+++++|+
T Consensus        91 iv~~Ll~~Gadi-N~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~-~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll  168 (489)
T PHA02798         91 IVKILIENGADI-NKKNSDGETPLYCLLSNGYINNLEILLFMIE-NGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLL  168 (489)
T ss_pred             HHHHHHHCCCCC-CCCCCCcCcHHHHHHHcCCcChHHHHHHHHH-cCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHH
Confidence            999999999998 8899999 9999999876   7899999999 899999999999999999999988   99999999


Q ss_pred             hCCCCCCCCcccc-cCCCcHHHHHHhhc--chhhhHHHHHHHHhhc-------------------------chHHHHHHH
Q 048253          159 DNMDDPQFLNAED-DYGMTITQLAVAVK--LCFQNLVELVEEYCHS-------------------------KWGYVIRFL  210 (323)
Q Consensus       159 ~~g~~~~~~~~~d-~~g~t~Lh~A~~~~--~~~~~~~~~l~~~~~~-------------------------~~~~~v~~L  210 (323)
                      ++|++   ++.++ ..|.||||.++..+  ....+++++|.+.+..                         ...+++++|
T Consensus       169 ~~gad---in~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l  245 (489)
T PHA02798        169 EKGVD---INTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFI  245 (489)
T ss_pred             HhCCC---cccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHH
Confidence            99998   88775 57899999988754  1234777777655321                         123566666


Q ss_pred             hhcccccccccccCCCchhhhhhhccCCCchhhhHHHHhhh-------HHHHHHHHHHHH
Q 048253          211 TTRTMIEVNALNANGFMALDTLAQSKRDKKDWEIEDWKMIG-------WKKMRNALMVVA  263 (323)
Q Consensus       211 l~~g~~~~~~~d~~g~tpl~~A~~~~~~~~~~~i~~~L~~~-------~~~~~~~~~~~~  263 (323)
                      +. + +|+|.+|..|+||||+|+.    .++.+++++|-..       +..+.++++.+.
T Consensus       246 ~~-~-~dvN~~d~~G~TPL~~A~~----~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~  299 (489)
T PHA02798        246 FS-Y-IDINQVDELGFNPLYYSVS----HNNRKIFEYLLQLGGDINIITELGNTCLFTAF  299 (489)
T ss_pred             Hh-c-CCCCCcCcCCccHHHHHHH----cCcHHHHHHHHHcCCcccccCCCCCcHHHHHH
Confidence            55 4 8999999999999999999    8899999999332       355677777665

>PHA02859 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.6e-31  Score=221.77  Aligned_cols=175  Identities=19%  Similarity=0.154  Sum_probs=155.5

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcC--CHHHHHHHHHhCCCcccccC-CCCCcHHHH
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLG--HVDFEGEIRRQKPELAGELD-SNQFSALHI   77 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~~~~~~-~~g~tpL~~   77 (323)
                      +.||||.|+..|+.+.|+.|++..      ...|..|.||||+|+..+  +.+++++|+++|+++ +.++ ..|+||||+
T Consensus        21 ~~~pL~~A~~~~~~~~vk~Li~~~------n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv-n~~~~~~g~TpLh~   93 (209)
T PHA02859         21 YCNPLFYYVEKDDIEGVKKWIKFV------NDCNDLYETPIFSCLEKDKVNVEILKFLIENGADV-NFKTRDNNLSALHH   93 (209)
T ss_pred             cCcHHHHHHHhCcHHHHHHHHHhh------hccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCC-CccCCCCCCCHHHH
Confidence            468999999999999999999753      224677999999999865  899999999999998 7776 589999999


Q ss_pred             HHhc---CCHHHHHHHHhcCCccccccCCCC-cHHHHHHH--hCCHHHHHHHHHhCCCcccccccccccHHHH-HHhhCc
Q 048253           78 ASQK---VHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAM--KGRIDVLEELFRTRPLAASATMIWGETILHL-CVKHNQ  150 (323)
Q Consensus        78 A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~-A~~~g~  150 (323)
                      |+..   ++.+++++|+++|+++ +.++..| ||||.|+.  .++.+++++|++ .+++++.+|.+|.||||. |+..++
T Consensus        94 a~~~~~~~~~eiv~~Ll~~gadi-n~~d~~G~TpLh~a~~~~~~~~~iv~~Li~-~gadin~~d~~g~t~Lh~~a~~~~~  171 (209)
T PHA02859         94 YLSFNKNVEPEILKILIDSGSSI-TEEDEDGKNLLHMYMCNFNVRINVIKLLID-SGVSFLNKDFDNNNILYSYILFHSD  171 (209)
T ss_pred             HHHhCccccHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhccCCHHHHHHHHH-cCCCcccccCCCCcHHHHHHHhcCC
Confidence            8764   4799999999999999 8899999 99999986  468999999999 889999999999999996 567889


Q ss_pred             hhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcch
Q 048253          151 LDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLC  187 (323)
Q Consensus       151 ~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~  187 (323)
                      .+++++|+++|++   ++.+|..|.||||+|..++-.
T Consensus       172 ~~iv~~Ll~~Gad---i~~~d~~g~tpl~la~~~~~~  205 (209)
T PHA02859        172 KKIFDFLTSLGID---INETNKSGYNCYDLIKFRNLF  205 (209)
T ss_pred             HHHHHHHHHcCCC---CCCCCCCCCCHHHHHhhhhhh
Confidence            9999999999999   999999999999999877543

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.98  E-value=5.7e-32  Score=235.69  Aligned_cols=215  Identities=20%  Similarity=0.216  Sum_probs=188.4

Q ss_pred             HHHHHhCCHHHHHHHhccCcc--ccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCC-Cc-------ccccCCCCCcHH
Q 048253            6 YEAALKGCEPTLLELLQQDQL--IIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKP-EL-------AGELDSNQFSAL   75 (323)
Q Consensus         6 ~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~-~~-------~~~~~~~g~tpL   75 (323)
                      ..|++.|++..++.|+.+..+  +.+......+|.|||-+||++||.++|++|+++.. ++       .+-...+|-+||
T Consensus         9 ~naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappL   88 (615)
T KOG0508|consen    9 INAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPL   88 (615)
T ss_pred             HHHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchh
Confidence            378899999999888877543  22333345569999999999999999999999643 22       122356788999


Q ss_pred             HHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHH
Q 048253           76 HIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDAL  154 (323)
Q Consensus        76 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v  154 (323)
                      -.|+..||.++||.|+++|+++ +...... |||-.||..|+.+++++|++ ++++++..|..|.|.||+|++.|+.+++
T Consensus        89 WaAsaAGHl~vVk~L~~~ga~V-N~tT~TNStPLraACfDG~leivKyLvE-~gad~~IanrhGhTcLmIa~ykGh~~I~  166 (615)
T KOG0508|consen   89 WAASAAGHLEVVKLLLRRGASV-NDTTRTNSTPLRAACFDGHLEIVKYLVE-HGADPEIANRHGHTCLMIACYKGHVDIA  166 (615)
T ss_pred             hHHhccCcHHHHHHHHHhcCcc-ccccccCCccHHHHHhcchhHHHHHHHH-cCCCCcccccCCCeeEEeeeccCchHHH
Confidence            9999999999999999999999 5566666 99999999999999999998 9999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhh
Q 048253          155 KFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQ  234 (323)
Q Consensus       155 ~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~  234 (323)
                      ++|++.|+|   +|.++..|+|+||.+++.|+.                 +++++|+.+| +.++ +|..|.|||..|..
T Consensus       167 qyLle~gAD---vn~ks~kGNTALH~caEsG~v-----------------divq~Ll~~g-a~i~-~d~~GmtPL~~Aa~  224 (615)
T KOG0508|consen  167 QYLLEQGAD---VNAKSYKGNTALHDCAESGSV-----------------DIVQLLLKHG-AKID-VDGHGMTPLLLAAV  224 (615)
T ss_pred             HHHHHhCCC---cchhcccCchHHHhhhhcccH-----------------HHHHHHHhCC-ceee-ecCCCCchHHHHhh
Confidence            999999999   999999999999999999999                 9999999998 6765 56669999999999


Q ss_pred             ccCCCchhhhHHHH
Q 048253          235 SKRDKKDWEIEDWK  248 (323)
Q Consensus       235 ~~~~~~~~~i~~~L  248 (323)
                          .|..++++.|
T Consensus       225 ----tG~~~iVe~L  234 (615)
T KOG0508|consen  225 ----TGHTDIVERL  234 (615)
T ss_pred             ----hcchHHHHHH
Confidence                8999999988

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.98  E-value=9.9e-32  Score=243.03  Aligned_cols=201  Identities=18%  Similarity=0.194  Sum_probs=181.2

Q ss_pred             CCHHHHHHHcCCHHHHHHHHHh-CCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhC
Q 048253           38 EFPLHAAALLGHVDFEGEIRRQ-KPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKG  115 (323)
Q Consensus        38 ~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g  115 (323)
                      .+.++.|+++|.++-|+.|++. +.++ +..|++|.|+||+|+-+++.+++++|+++|++++..-..-+ ||||+|+++|
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v-~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G  123 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESV-NNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNG  123 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCC-CCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcC
Confidence            4678899999999999999999 6666 88999999999999999999999999999999944444667 9999999999


Q ss_pred             CHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHH
Q 048253          116 RIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELV  195 (323)
Q Consensus       116 ~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l  195 (323)
                      +..++++|++ +|++++.+|.+|.+|||.|++.|+.-.+-+|+.+|++   +|.+|.+|+||||+|+.+|..        
T Consensus       124 ~~~vv~lLlq-hGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d---~d~~D~~grTpLmwAaykg~~--------  191 (600)
T KOG0509|consen  124 HISVVDLLLQ-HGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGAD---IDLRDNNGRTPLMWAAYKGFA--------  191 (600)
T ss_pred             cHHHHHHHHH-cCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhccc---CCCcCCCCCCHHHHHHHhccc--------
Confidence            9999999999 9999999999999999999999999999999999988   999999999999999999998        


Q ss_pred             HHHhhcchHHHHHHHhhcccccccccc-cCCCchhhhhhhccCCCchhhhHHHHhhh-------HHHHHHHHHHHHHH
Q 048253          196 EEYCHSKWGYVIRFLTTRTMIEVNALN-ANGFMALDTLAQSKRDKKDWEIEDWKMIG-------WKKMRNALMVVASL  265 (323)
Q Consensus       196 ~~~~~~~~~~~v~~Ll~~g~~~~~~~d-~~g~tpl~~A~~~~~~~~~~~i~~~L~~~-------~~~~~~~~~~~~~~  265 (323)
                               ..+..|+..+ +.++.+| ++|.||||+|+.    .++..++.++.+.       +.++.+++.++...
T Consensus       192 ---------~~v~~LL~f~-a~~~~~d~~~g~TpLHwa~~----~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  192 ---------LFVRRLLKFG-ASLLLTDDNHGNTPLHWAVV----GGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             ---------HHHHHHHHhc-ccccccccccCCchHHHHHh----cCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence                     7689999998 8999998 999999999999    8988888865222       34456777776554

>PHA02917 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.1e-30  Score=250.46  Aligned_cols=220  Identities=14%  Similarity=0.018  Sum_probs=178.4

Q ss_pred             CCcHHHHHHHh---CCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHH----HHHHHHHhCCCcccccCCCCCc
Q 048253            1 MKSMLYEAALK---GCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVD----FEGEIRRQKPELAGELDSNQFS   73 (323)
Q Consensus         1 g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~----~v~~Ll~~~~~~~~~~~~~g~t   73 (323)
                      |+||||.|+..   |+.++|+.|++.|++++.   .+..|.||||+|+..|+.+    +++.|++.+... +..+  ..+
T Consensus        32 g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~---~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~-n~~~--~~~  105 (661)
T PHA02917         32 KNNALHAYLFNEHCNNVEVVKLLLDSGTNPLH---KNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYS-NIND--FNI  105 (661)
T ss_pred             CCcHHHHHHHhhhcCcHHHHHHHHHCCCCccc---cCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCC-CCCC--cch
Confidence            78999997555   889999999999998754   4778999999999999954    567888775442 4433  337


Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHH--HhCCHHHHHHHHHhCCCccccccc---cc---------
Q 048253           74 ALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAA--MKGRIDVLEELFRTRPLAASATMI---WG---------  138 (323)
Q Consensus        74 pL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~--~~g~~~~v~~Ll~~~~~~~~~~~~---~g---------  138 (323)
                      ++|+|+..++.+++++|+++|+++ +.++..| ||||.|+  ..|+.+++++|++ .|++++..|.   .|         
T Consensus       106 ~~~~a~~~~~~e~vk~Ll~~Gadi-n~~d~~g~T~L~~~~a~~~~~~eivklLi~-~Ga~vn~~d~~~~~g~~~~~~~~~  183 (661)
T PHA02917        106 FSYMKSKNVDVDLIKVLVEHGFDL-SVKCENHRSVIENYVMTDDPVPEIIDLFIE-NGCSVLYEDEDDEYGYAYDDYQPR  183 (661)
T ss_pred             HHHHHhhcCCHHHHHHHHHcCCCC-CccCCCCccHHHHHHHccCCCHHHHHHHHH-cCCCcccccccccccccccccccc
Confidence            788899999999999999999999 8899999 9999654  5789999999999 7888876543   23         


Q ss_pred             --ccHHHHHHh-----------hCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHH
Q 048253          139 --ETILHLCVK-----------HNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGY  205 (323)
Q Consensus       139 --~t~Lh~A~~-----------~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~  205 (323)
                        .||||+|+.           .++.+++++|+++|++   +|.+|.+|.||||+|+..|+.               ..+
T Consensus       184 ~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gad---vn~~d~~G~TpLh~A~~~g~~---------------~~e  245 (661)
T PHA02917        184 NCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIK---PSSIDKNYCTALQYYIKSSHI---------------DID  245 (661)
T ss_pred             ccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCC---cccCCCCCCcHHHHHHHcCCC---------------cHH
Confidence              599999986           4689999999999999   999999999999999999985               016


Q ss_pred             HHHHHhhccccccc----ccccCCCchhhhhhhcc-----CCCchhhhHHHH
Q 048253          206 VIRFLTTRTMIEVN----ALNANGFMALDTLAQSK-----RDKKDWEIEDWK  248 (323)
Q Consensus       206 ~v~~Ll~~g~~~~~----~~d~~g~tpl~~A~~~~-----~~~~~~~i~~~L  248 (323)
                      +|++|++ | ++++    ..|..|.+|+++|+.-.     ......+++++|
T Consensus       246 ivk~Li~-g-~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~L  295 (661)
T PHA02917        246 IVKLLMK-G-IDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLF  295 (661)
T ss_pred             HHHHHHh-C-CcccccccccCcccccchHHHHHHHhhccccccchHHHHHHH
Confidence            9999985 6 6765    56778899999988311     112266788777

>PHA02730 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.9e-30  Score=243.47  Aligned_cols=236  Identities=13%  Similarity=0.022  Sum_probs=185.9

Q ss_pred             CCcHHHHHHHhC---CHHHHHHHhccCccccccccCCCCCCCHHHHHHHcC--CHHHHHHHHHhCCCc-ccccCCCCCcH
Q 048253            1 MKSMLYEAALKG---CEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLG--HVDFEGEIRRQKPEL-AGELDSNQFSA   74 (323)
Q Consensus         1 g~t~L~~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~-~~~~~~~g~tp   74 (323)
                      |+||||.|+..|   +.++|++|+++|++++.+   |..|.||||+|+..+  +.++|++|++.|++. .+..+..+.+|
T Consensus        41 G~TaLh~A~~~~~~~~~eivklLLs~GAdin~k---D~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~  117 (672)
T PHA02730         41 GNNALHCYVSNKCDTDIKIVRLLLSRGVERLCR---NNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFD  117 (672)
T ss_pred             CCcHHHHHHHcCCcCcHHHHHHHHhCCCCCccc---CCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCch
Confidence            789999999997   599999999999998654   788999999999977  799999999996532 15577779999


Q ss_pred             HHHHHh--cCCHHHHHHHHh-cCCccccccC----CCC-cHHHHHHHhCCHHHHHHHHHhCCCccc-------ccccccc
Q 048253           75 LHIASQ--KVHVDKIKALLQ-VNPAWCFAGD----LDG-SPLHLAAMKGRIDVLEELFRTRPLAAS-------ATMIWGE  139 (323)
Q Consensus        75 L~~A~~--~g~~~~v~~Ll~-~~~~~~~~~~----~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~-------~~~~~g~  139 (323)
                      ||.++.  .++.+++++|+. .+.++....+    ..| +|+++|+..+++++|++|++ .+++++       ..+..+.
T Consensus       118 l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~-~g~~v~g~~~~~~~~~~~~c  196 (672)
T PHA02730        118 LYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLK-SECYSTGYVFRSCMYDSDRC  196 (672)
T ss_pred             HHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHH-cCCcccccccccccccCCcc
Confidence            999988  889999999996 5667632222    368 99999999999999999999 777774       2333344


Q ss_pred             -cHHHHH------HhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHH---------------
Q 048253          140 -TILHLC------VKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEE---------------  197 (323)
Q Consensus       140 -t~Lh~A------~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~---------------  197 (323)
                       |.||++      ..+++.|++++|+++|++   +|.+|.+|.||||++........+++++|..               
T Consensus       197 ~~~l~~~il~~~~~~~n~~eiv~lLIs~Gad---IN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~  273 (672)
T PHA02730        197 KNSLHYYILSHRESESLSKDVIKCLIDNNVS---IHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPY  273 (672)
T ss_pred             chhHHHHHHhhhhhhccCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchh
Confidence             555533      456789999999999999   9999999999999643332212366666555               


Q ss_pred             -----------------Hh-----------------------------------------------------------h-
Q 048253          198 -----------------YC-----------------------------------------------------------H-  200 (323)
Q Consensus       198 -----------------~~-----------------------------------------------------------~-  200 (323)
                                       ++                                                           + 
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~  353 (672)
T PHA02730        274 IRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHY  353 (672)
T ss_pred             hhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhc
Confidence                             00                                                           0 


Q ss_pred             --cchHHHHHHHhhcccccccccccCCCchhhhhhhccCCCch----hhhHHHHh
Q 048253          201 --SKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDKKD----WEIEDWKM  249 (323)
Q Consensus       201 --~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~~~~~~~~----~~i~~~L~  249 (323)
                        .-..+++++|+++| |++|.. ..|.||||+|+.    .+.    .+++++|-
T Consensus       354 ~~~v~ieIvelLIs~G-AdIN~k-~~G~TpLH~Aa~----~nnn~i~~eIvelLI  402 (672)
T PHA02730        354 GDMVSIPILRCMLDNG-ATMDKT-TDNNYPLHDYFV----NNNNIVDVNVVRFIV  402 (672)
T ss_pred             CCcCcHHHHHHHHHCC-CCCCcC-CCCCcHHHHHHH----HcCCcchHHHHHHHH
Confidence              01258999999999 999986 799999999988    443    79999984

>PHA02917 ankyrin-like protein; Provisional

Probab=99.97  E-value=3.4e-30  Score=246.97  Aligned_cols=204  Identities=16%  Similarity=0.122  Sum_probs=170.1

Q ss_pred             HHHHHHHhccCccccccccCCCCCCCHHHHHHHc---CCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHH----H
Q 048253           14 EPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALL---GHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVD----K   86 (323)
Q Consensus        14 ~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~----~   86 (323)
                      ++.|+.|+..+...+   ..|.+|+||||+|+..   |+.++|++|++.|+++ +..+..|+||||+|+..|+.+    +
T Consensus        12 ~~~~~~l~~~~~~~~---~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v-~~~~~~g~TpL~~Aa~~g~~~v~~~~   87 (661)
T PHA02917         12 LDELKQMLRDRDPND---TRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNP-LHKNWRQLTPLEEYTNSRHVKVNKDI   87 (661)
T ss_pred             HHHHHHHHhccCccc---ccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCc-cccCCCCCCHHHHHHHcCChhHHHHH
Confidence            467889998776652   3477899999998665   8899999999999998 789999999999999999854    5


Q ss_pred             HHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHH--HhhCchhHHHHHHhCCCC
Q 048253           87 IKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLC--VKHNQLDALKFLLDNMDD  163 (323)
Q Consensus        87 v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A--~~~g~~~~v~~Ll~~g~~  163 (323)
                      ++.|++.+... +..  .. +++|.|+..++.+++++|++ .|++++.+|.+|+||||.|  +.+|+.+++++|+++|++
T Consensus        88 ~~~Ll~~~~~~-n~~--~~~~~~~~a~~~~~~e~vk~Ll~-~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~  163 (661)
T PHA02917         88 AMALLEATGYS-NIN--DFNIFSYMKSKNVDVDLIKVLVE-HGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCS  163 (661)
T ss_pred             HHHHHhccCCC-CCC--CcchHHHHHhhcCCHHHHHHHHH-cCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCC
Confidence            67888765433 322  23 67788999999999999999 8999999999999999964  457899999999999999


Q ss_pred             CCCCccccc---CC-----------CcHHHHHHh-----------hcchhhhHHHHHHHHhhcchHHHHHHHhhcccccc
Q 048253          164 PQFLNAEDD---YG-----------MTITQLAVA-----------VKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEV  218 (323)
Q Consensus       164 ~~~~~~~d~---~g-----------~t~Lh~A~~-----------~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~  218 (323)
                         +|.+|.   .|           .||||+|+.           .++.                 +++++|+++| +++
T Consensus       164 ---vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~-----------------eiv~~Li~~G-adv  222 (661)
T PHA02917        164 ---VLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRP-----------------EVVKCLINHG-IKP  222 (661)
T ss_pred             ---ccccccccccccccccccccccccHHHHHHhhcccccccccccCcH-----------------HHHHHHHHCC-CCc
Confidence               665543   34           599999986           3466                 9999999999 999


Q ss_pred             cccccCCCchhhhhhhccCCCchh--hhHHHHhh
Q 048253          219 NALNANGFMALDTLAQSKRDKKDW--EIEDWKMI  250 (323)
Q Consensus       219 ~~~d~~g~tpl~~A~~~~~~~~~~--~i~~~L~~  250 (323)
                      |.+|.+|.||||+|++    .++.  +++++|..
T Consensus       223 n~~d~~G~TpLh~A~~----~g~~~~eivk~Li~  252 (661)
T PHA02917        223 SSIDKNYCTALQYYIK----SSHIDIDIVKLLMK  252 (661)
T ss_pred             ccCCCCCCcHHHHHHH----cCCCcHHHHHHHHh
Confidence            9999999999999999    6664  79999843

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.97  E-value=1.6e-31  Score=259.90  Aligned_cols=218  Identities=24%  Similarity=0.248  Sum_probs=158.5

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-----------------
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPEL-----------------   63 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-----------------   63 (323)
                      |.||+|.|+.+|..+.++.+++++.+.+..   +..|.||||.|+.+++..+++.+++++++.                 
T Consensus       374 ~~~pl~la~~~g~~~~v~Lll~~ga~~~~~---gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~  450 (1143)
T KOG4177|consen  374 GFTPLHLAVKSGRVSVVELLLEAGADPNSA---GKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKK  450 (1143)
T ss_pred             CCcchhhhcccCchhHHHhhhhccCCcccC---CCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhc
Confidence            457777777777777777777777664222   334455555555555555444444444444                 


Q ss_pred             ----------------ccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHh
Q 048253           64 ----------------AGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRT  126 (323)
Q Consensus        64 ----------------~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~  126 (323)
                                      .+.....|.||||+|++.|+.++++.|++.++.. +...+.+ +++|.|...+...+++.+++ 
T Consensus       451 g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~-~~~~~~~l~~lhla~~~~~v~~~~~l~~-  528 (1143)
T KOG4177|consen  451 GRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGAND-NLDAKKGLTPLHLAADEDTVKVAKILLE-  528 (1143)
T ss_pred             ccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCcc-CccchhccchhhhhhhhhhHHHHHHHhh-
Confidence                            0444455555555555555555555555554443 3344444 55555555555555555555 


Q ss_pred             CCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHH
Q 048253          127 RPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYV  206 (323)
Q Consensus       127 ~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~  206 (323)
                      .+..++.++..|+||||.|+..|+.++|++|+++|++   ++.+|+.|+||||.|+..|+.                 ++
T Consensus       529 ~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAd---v~ak~~~G~TPLH~Aa~~G~~-----------------~i  588 (1143)
T KOG4177|consen  529 HGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGAD---VNAKDKLGYTPLHQAAQQGHN-----------------DI  588 (1143)
T ss_pred             cCCceehhcccccchHHHHHhcCCchHHHHhhhCCcc---ccccCCCCCChhhHHHHcChH-----------------HH
Confidence            5667777888999999999999999999999999999   999999999999999999999                 99


Q ss_pred             HHHHhhcccccccccccCCCchhhhhhhccCCCchhhhHHHH
Q 048253          207 IRFLTTRTMIEVNALNANGFMALDTLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       207 v~~Ll~~g~~~~~~~d~~g~tpl~~A~~~~~~~~~~~i~~~L  248 (323)
                      +++|+++| +++|..|.+|.|||++|.+    .+..++.++|
T Consensus       589 ~~LLlk~G-A~vna~d~~g~TpL~iA~~----lg~~~~~k~l  625 (1143)
T KOG4177|consen  589 AELLLKHG-ASVNAADLDGFTPLHIAVR----LGYLSVVKLL  625 (1143)
T ss_pred             HHHHHHcC-CCCCcccccCcchhHHHHH----hcccchhhHH
Confidence            99999999 9999999999999999999    9999999988

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=1.7e-30  Score=226.48  Aligned_cols=187  Identities=23%  Similarity=0.257  Sum_probs=165.2

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccC-cccc-----ccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcH
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQD-QLII-----GRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSA   74 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~-----~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tp   74 (323)
                      |.|||.+||++|+.++|++|+++. +++.     ..+....+|.+||-.|+.-||+++|+.|+++++++ |.......||
T Consensus        42 g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~V-N~tT~TNStP  120 (615)
T KOG0508|consen   42 GGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASV-NDTTRTNSTP  120 (615)
T ss_pred             CCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCcc-ccccccCCcc
Confidence            579999999999999999999943 2211     11122346899999999999999999999999887 7777777899


Q ss_pred             HHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhH
Q 048253           75 LHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDA  153 (323)
Q Consensus        75 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~  153 (323)
                      |.-||.-|+.+++|+|+++|+++ ...|+.| |.||+|+..|+.+++++|++ .++++|.++..|+|+||.+++.|+.++
T Consensus       121 LraACfDG~leivKyLvE~gad~-~IanrhGhTcLmIa~ykGh~~I~qyLle-~gADvn~ks~kGNTALH~caEsG~vdi  198 (615)
T KOG0508|consen  121 LRAACFDGHLEIVKYLVEHGADP-EIANRHGHTCLMIACYKGHVDIAQYLLE-QGADVNAKSYKGNTALHDCAESGSVDI  198 (615)
T ss_pred             HHHHHhcchhHHHHHHHHcCCCC-cccccCCCeeEEeeeccCchHHHHHHHH-hCCCcchhcccCchHHHhhhhcccHHH
Confidence            99999999999999999999999 9999999 99999999999999999999 899999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHH
Q 048253          154 LKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVE  196 (323)
Q Consensus       154 v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~  196 (323)
                      +++|+++|+.   +. +|..|.|||..|+..|+.  .+++.|.
T Consensus       199 vq~Ll~~ga~---i~-~d~~GmtPL~~Aa~tG~~--~iVe~L~  235 (615)
T KOG0508|consen  199 VQLLLKHGAK---ID-VDGHGMTPLLLAAVTGHT--DIVERLL  235 (615)
T ss_pred             HHHHHhCCce---ee-ecCCCCchHHHHhhhcch--HHHHHHh
Confidence            9999999986   43 677799999999999988  5555444

>PHA02795 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.7e-29  Score=226.87  Aligned_cols=200  Identities=11%  Similarity=0.001  Sum_probs=169.3

Q ss_pred             HHHHhCCHHHHHHHhccCccccccc---cCCCCCCCHHHHHHH--cCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhc
Q 048253            7 EAALKGCEPTLLELLQQDQLIIGRV---GVNCLSEFPLHAAAL--LGHVDFEGEIRRQKPELAGELDSNQFSALHIASQK   81 (323)
Q Consensus         7 ~A~~~g~~~~v~~Ll~~~~~~~~~~---~~~~~g~t~Lh~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~   81 (323)
                      .|+..+..|++++|++++++++-..   ..+..++|+||+|+.  .|+.++|++|+++|+++ +.  .++.||+|.|+..
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADI-n~--~~~~t~lh~A~~~  159 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVI-YK--IECLNAYFRGICK  159 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCC-CC--CCCCCHHHHHHHc
Confidence            7899999999999999999865111   235669999999999  89999999999999998 65  3558999999999


Q ss_pred             CCHHHHHHHHhcCCcccccc-----CCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHH
Q 048253           82 VHVDKIKALLQVNPAWCFAG-----DLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALK  155 (323)
Q Consensus        82 g~~~~v~~Ll~~~~~~~~~~-----~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~  155 (323)
                      ++.+++++|+++|++..+..     +..+ +++|.|...++.+++++|++ .+++++.+|..|+||||+|+..|+.++++
T Consensus       160 ~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs-~GADIN~kD~~G~TpLh~Aa~~g~~eiVe  238 (437)
T PHA02795        160 KESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIP-YIEDINQLDAGGRTLLYRAIYAGYIDLVS  238 (437)
T ss_pred             CcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHh-CcCCcCcCCCCCCCHHHHHHHcCCHHHHH
Confidence            99999999999998553332     1347 99999999999999999999 89999999999999999999999999999


Q ss_pred             HHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhccccccccccc
Q 048253          156 FLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNA  223 (323)
Q Consensus       156 ~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~  223 (323)
                      +|+++|++   ++.+|..|.||||+|+..|+...         ...++.+++++|+++| ++++..+.
T Consensus       239 lLL~~GAd---IN~~d~~G~TpLh~Aa~~g~~~~---------~~~~~~eIvelLL~~g-adI~~~~~  293 (437)
T PHA02795        239 WLLENGAN---VNAVMSNGYTCLDVAVDRGSVIA---------RRETHLKILEILLREP-LSIDCIKL  293 (437)
T ss_pred             HHHHCCCC---CCCcCCCCCCHHHHHHHcCCccc---------ccccHHHHHHHHHhCC-CCCCchhH
Confidence            99999999   99999999999999999884200         0001128999999988 77776543

>PHA02795 ankyrin-like protein; Provisional

Probab=99.96  E-value=4.5e-29  Score=224.16  Aligned_cols=199  Identities=15%  Similarity=0.097  Sum_probs=171.4

Q ss_pred             HHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccc------ccCCCCCcHHHHHHh--cCCHHHH
Q 048253           16 TLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAG------ELDSNQFSALHIASQ--KVHVDKI   87 (323)
Q Consensus        16 ~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~------~~~~~g~tpL~~A~~--~g~~~~v   87 (323)
                      .-++++.+|.+++..   ..+|     +|+..+..|++++|+++++++ +      .++..++|+||.++.  .|+.+++
T Consensus        64 ~~~~~~~~~~~i~~~---~~~~-----~~~~~~~k~~~~~l~s~~~~~-~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV  134 (437)
T PHA02795         64 LYDYFRIHRDNIDQY---IVDR-----LFAYITYKDIISALVSKNYME-DIFSIIIKNCNSVQDLLLYYLSNAYVEIDIV  134 (437)
T ss_pred             HHHHHHHcCcchhhh---hhhh-----HHhhcchHHHHHHHHhccccc-chhhhhhhccccccHHHHHHHHhcCCCHHHH
Confidence            356778888877544   2224     999999999999999999997 5      678889999999999  8999999


Q ss_pred             HHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCC-ccccc-----ccccccHHHHHHhhCchhHHHHHHhC
Q 048253           88 KALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPL-AASAT-----MIWGETILHLCVKHNQLDALKFLLDN  160 (323)
Q Consensus        88 ~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~-----~~~g~t~Lh~A~~~g~~~~v~~Ll~~  160 (323)
                      ++|+++|+++ +.  .++ ||+|.|+..++.+++++|++ .|+ +.+..     +..+.+++|.|+.+++.+++++|+++
T Consensus       135 ~~LI~~GADI-n~--~~~~t~lh~A~~~~~~eIVk~Lls-~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~  210 (437)
T PHA02795        135 DFMVDHGAVI-YK--IECLNAYFRGICKKESSVVEFILN-CGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPY  210 (437)
T ss_pred             HHHHHCCCCC-CC--CCCCCHHHHHHHcCcHHHHHHHHh-cCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhC
Confidence            9999999999 44  456 99999999999999999999 454 33332     23478999999999999999999999


Q ss_pred             CCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhhccC---
Q 048253          161 MDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKR---  237 (323)
Q Consensus       161 g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~~~~---  237 (323)
                      |++   +|.+|..|.||||+|+..|+.                 +++++|+++| ++++.+|..|.||||+|+....   
T Consensus       211 GAD---IN~kD~~G~TpLh~Aa~~g~~-----------------eiVelLL~~G-AdIN~~d~~G~TpLh~Aa~~g~~~~  269 (437)
T PHA02795        211 IED---INQLDAGGRTLLYRAIYAGYI-----------------DLVSWLLENG-ANVNAVMSNGYTCLDVAVDRGSVIA  269 (437)
T ss_pred             cCC---cCcCCCCCCCHHHHHHHcCCH-----------------HHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCCccc
Confidence            999   999999999999999999999                 9999999999 9999999999999999999321   


Q ss_pred             -CCchhhhHHHH
Q 048253          238 -DKKDWEIEDWK  248 (323)
Q Consensus       238 -~~~~~~i~~~L  248 (323)
                       ..++.+++++|
T Consensus       270 ~~~~~~eIvelL  281 (437)
T PHA02795        270 RRETHLKILEIL  281 (437)
T ss_pred             ccccHHHHHHHH
Confidence             12356899988

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.96  E-value=4.6e-30  Score=249.74  Aligned_cols=235  Identities=22%  Similarity=0.204  Sum_probs=203.9

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHh
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQ   80 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~   80 (323)
                      |.||||++++.|+.+...+|...++....   .+..|.||+|.|+.+|..+++++++.++.++ +.++..|.||||.|+.
T Consensus       341 g~t~lHlaa~~~~~~~~~~l~~~~~~~~~---a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~-~~~gk~gvTplh~aa~  416 (1143)
T KOG4177|consen  341 GYTPLHLAAKEGQVEVAGALLEHGAQRRQ---AEEKGFTPLHLAVKSGRVSVVELLLEAGADP-NSAGKNGVTPLHVAAH  416 (1143)
T ss_pred             CcccccHhhhhhhHHHHHHhhccccccCc---ccccCCcchhhhcccCchhHHHhhhhccCCc-ccCCCCCcceeeehhh
Confidence            57999999999999988888888766432   3667999999999999999999999999997 9999999999999999


Q ss_pred             cCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhC-CHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHH
Q 048253           81 KVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKG-RIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLL  158 (323)
Q Consensus        81 ~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll  158 (323)
                      .++..+++.++++|++. +..+..| ||+|+|+..| ..++...+++ .+.+++.....|.||||+|+..|+.+++..++
T Consensus       417 ~~~~~~v~l~l~~gA~~-~~~~~lG~T~lhvaa~~g~~~~~~~~l~~-~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~lll  494 (1143)
T KOG4177|consen  417 YGNPRVVKLLLKRGASP-NAKAKLGYTPLHVAAKKGRYLQIARLLLQ-YGADPNAVSKQGFTPLHLAAQEGHTEVVQLLL  494 (1143)
T ss_pred             ccCcceEEEEeccCCCh-hhHhhcCCChhhhhhhcccHhhhhhhHhh-cCCCcchhccccCcchhhhhccCCchHHHHhh
Confidence            99999999999999998 8889999 9999999999 6677777777 88999999999999999999999998888888


Q ss_pred             hCCC------------------------------CCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHH
Q 048253          159 DNMD------------------------------DPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIR  208 (323)
Q Consensus       159 ~~g~------------------------------~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~  208 (323)
                      +.++                              ....++.++.+|+||||.|+.+|+.                 .+|+
T Consensus       495 e~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v-----------------~~Vk  557 (1143)
T KOG4177|consen  495 EGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNV-----------------DLVK  557 (1143)
T ss_pred             hcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCc-----------------hHHH
Confidence            7652                              2333778888999999999999999                 9999


Q ss_pred             HHhhcccccccccccCCCchhhhhhhccCCCchhhhHHHHhhh-------HHHHHHHHHHHH
Q 048253          209 FLTTRTMIEVNALNANGFMALDTLAQSKRDKKDWEIEDWKMIG-------WKKMRNALMVVA  263 (323)
Q Consensus       209 ~Ll~~g~~~~~~~d~~g~tpl~~A~~~~~~~~~~~i~~~L~~~-------~~~~~~~~~~~~  263 (323)
                      +|+++| +|++.+++.|+||||.|++    .++.+|+++|-.+       +.++.+.++++.
T Consensus       558 fLLe~g-Adv~ak~~~G~TPLH~Aa~----~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~  614 (1143)
T KOG4177|consen  558 FLLEHG-ADVNAKDKLGYTPLHQAAQ----QGHNDIAELLLKHGASVNAADLDGFTPLHIAV  614 (1143)
T ss_pred             HhhhCC-ccccccCCCCCChhhHHHH----cChHHHHHHHHHcCCCCCcccccCcchhHHHH
Confidence            999999 9999999999999999999    9999999999332       344445555544

>PHA02730 ankyrin-like protein; Provisional

Probab=99.96  E-value=3.5e-28  Score=228.30  Aligned_cols=210  Identities=16%  Similarity=0.134  Sum_probs=174.1

Q ss_pred             HHhCCHHHHHHHhccCccccccccCCCCCCCHHHH--HHHcCCHHHHHHHHH----------------------------
Q 048253            9 ALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHA--AALLGHVDFEGEIRR----------------------------   58 (323)
Q Consensus         9 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~--A~~~g~~~~v~~Ll~----------------------------   58 (323)
                      ..+++.|+++.|+++|++++.+   |..|.||||+  |+..|+.|+|++|++                            
T Consensus       210 ~~~n~~eiv~lLIs~GadIN~k---d~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (672)
T PHA02730        210 SESLSKDVIKCLIDNNVSIHGR---DEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRF  286 (672)
T ss_pred             hhccCHHHHHHHHHCCCCCCCC---CCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhh
Confidence            5678999999999999998655   7789999995  666788999999999                            


Q ss_pred             ----hCCCcccc--------------------cCCCCCc---------------------HHHHHHhcC---CHHHHHHH
Q 048253           59 ----QKPELAGE--------------------LDSNQFS---------------------ALHIASQKV---HVDKIKAL   90 (323)
Q Consensus        59 ----~~~~~~~~--------------------~~~~g~t---------------------pL~~A~~~g---~~~~v~~L   90 (323)
                          ++.+. ..                    .+..|.+                     .||.=.+.+   +.+++++|
T Consensus       287 ~~~~~~~d~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelL  365 (672)
T PHA02730        287 RVTPYNVDM-EIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCM  365 (672)
T ss_pred             hcccCCcch-HHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHH
Confidence                55554 33                    4566654                     566666655   68999999


Q ss_pred             HhcCCccccccCCCC-cHHHHHHHhCC----HHHHHHHHHhCCC--cccccccccccHHHH---HHhhC---------ch
Q 048253           91 LQVNPAWCFAGDLDG-SPLHLAAMKGR----IDVLEELFRTRPL--AASATMIWGETILHL---CVKHN---------QL  151 (323)
Q Consensus        91 l~~~~~~~~~~~~~g-t~L~~A~~~g~----~~~v~~Ll~~~~~--~~~~~~~~g~t~Lh~---A~~~g---------~~  151 (323)
                      +++|+++ +.. ..| ||||+|+..++    .+++++|++ .++  +++.+|..|+||||.   |...+         ..
T Consensus       366 Is~GAdI-N~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs-~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~  442 (672)
T PHA02730        366 LDNGATM-DKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVE-NNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILI  442 (672)
T ss_pred             HHCCCCC-CcC-CCCCcHHHHHHHHcCCcchHHHHHHHHH-cCCCccccccccCCCchHhHHHHHHhccccccccchhHH
Confidence            9999999 554 688 99999998875    899999999 544  689999999999994   33232         23


Q ss_pred             hHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhccccccccccc-CCCchhh
Q 048253          152 DALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNA-NGFMALD  230 (323)
Q Consensus       152 ~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~-~g~tpl~  230 (323)
                      +++++|+++|++   +|.+|..|+||||+|+..++.                 +++++|+++| ++++.+|. .|.||+|
T Consensus       443 ~ivk~LIs~GAD---INakD~~G~TPLh~Aa~~~~~-----------------eive~LI~~G-AdIN~~d~~~g~TaL~  501 (672)
T PHA02730        443 DVFDILSKYMDD---IDMIDNENKTLLYYAVDVNNI-----------------QFARRLLEYG-ASVNTTSRSIINTAIQ  501 (672)
T ss_pred             HHHHHHHhcccc---hhccCCCCCCHHHHHHHhCCH-----------------HHHHHHHHCC-CCCCCCCCcCCcCHHH
Confidence            579999999999   999999999999999999999                 9999999999 99999997 5999999


Q ss_pred             hhhhccCCCchhhhHHHH
Q 048253          231 TLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       231 ~A~~~~~~~~~~~i~~~L  248 (323)
                      +|+.  ...++.+++++|
T Consensus       502 ~Aa~--~~~~~~eIv~~L  517 (672)
T PHA02730        502 KSSY--RRENKTKLVDLL  517 (672)
T ss_pred             HHHH--hhcCcHHHHHHH
Confidence            9987  112567888888

>PHA02792 ankyrin-like protein; Provisional

Probab=99.96  E-value=6.2e-28  Score=224.40  Aligned_cols=208  Identities=12%  Similarity=0.059  Sum_probs=172.9

Q ss_pred             CCcHHHHHHH-hCCHHHHHHHhccCccccc--c-------------------------------ccCCCCCCCHHHHHHH
Q 048253            1 MKSMLYEAAL-KGCEPTLLELLQQDQLIIG--R-------------------------------VGVNCLSEFPLHAAAL   46 (323)
Q Consensus         1 g~t~L~~A~~-~g~~~~v~~Ll~~~~~~~~--~-------------------------------~~~~~~g~t~Lh~A~~   46 (323)
                      |+||||+|+. .|++|++++|+++|++...  .                               +..|..|.||||+|+.
T Consensus       105 ~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~  184 (631)
T PHA02792        105 INIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYII  184 (631)
T ss_pred             CCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHh
Confidence            5688899966 6999999999999976321  0                               0134569999999999


Q ss_pred             cC-------CHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcC--CHHHHHHHH--------------------------
Q 048253           47 LG-------HVDFEGEIRRQKPELAGELDSNQFSALHIASQKV--HVDKIKALL--------------------------   91 (323)
Q Consensus        47 ~g-------~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g--~~~~v~~Ll--------------------------   91 (323)
                      ++       +.|++++|+++|+++ +..|..|.||||+|+.+.  ..|++++|+                          
T Consensus       185 ~~s~~~~~~~~~v~k~Li~~g~~~-~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~  263 (631)
T PHA02792        185 TRSQDGYATSLDVINYLISHEKEM-RYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNH  263 (631)
T ss_pred             hCCcccccCCHHHHHHHHhCCCCc-CccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCcc
Confidence            99       899999999999998 888999999999999887  555555444                          


Q ss_pred             -----------------------------------------------------------------hcCCccccccCCCC-
Q 048253           92 -----------------------------------------------------------------QVNPAWCFAGDLDG-  105 (323)
Q Consensus        92 -----------------------------------------------------------------~~~~~~~~~~~~~g-  105 (323)
                                                                                       +.|++. .  .... 
T Consensus       264 ~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~-~--r~~~~  340 (631)
T PHA02792        264 KIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATL-Y--RFKHI  340 (631)
T ss_pred             CccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCcc-c--cCCcc
Confidence                                                                             333332 1  1224 


Q ss_pred             cHHHHHHHhCCHHHHHHHHHhCCCccccccccc--ccHHHHHHhhCch---hHHHHHHhCCCCCCCCcccccCCCcHHHH
Q 048253          106 SPLHLAAMKGRIDVLEELFRTRPLAASATMIWG--ETILHLCVKHNQL---DALKFLLDNMDDPQFLNAEDDYGMTITQL  180 (323)
Q Consensus       106 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g--~t~Lh~A~~~g~~---~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~  180 (323)
                      .+++.|+..|+.+++++|++ .|++++.+|.+|  .||||+|+.....   +++++|+++|++   +|.+|..|.||||+
T Consensus       341 n~~~~Aa~~gn~eIVelLIs-~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GAD---IN~kD~~G~TPLh~  416 (631)
T PHA02792        341 NKYFQKFDNRDPKVVEYILK-NGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDD---INKIDKHGRSILYY  416 (631)
T ss_pred             hHHHHHHHcCCHHHHHHHHH-cCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCc---cccccccCcchHHH
Confidence            77899999999999999999 789999988775  6999998876654   457889999999   99999999999999


Q ss_pred             HHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhh
Q 048253          181 AVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQ  234 (323)
Q Consensus       181 A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~  234 (323)
                      |+..++.                 +++++|+++| ++++.+|..|.||+++|..
T Consensus       417 Aa~~~n~-----------------eivelLLs~G-ADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        417 CIESHSV-----------------SLVEWLIDNG-ADINITTKYGSTCIGICVI  452 (631)
T ss_pred             HHHcCCH-----------------HHHHHHHHCC-CCCCCcCCCCCCHHHHHHH
Confidence            9999999                 9999999998 9999999999999999875

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.96  E-value=3.6e-28  Score=239.34  Aligned_cols=223  Identities=19%  Similarity=0.137  Sum_probs=173.8

Q ss_pred             CcHHHHHHHhCCHHHHHHHhcc--CccccccccCCCCCCCHHH-HHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHH
Q 048253            2 KSMLYEAALKGCEPTLLELLQQ--DQLIIGRVGVNCLSEFPLH-AAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIA   78 (323)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~~~~g~t~Lh-~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A   78 (323)
                      +++|+.|++.|+.+.|+.++++  +.++   +..|..|+|||| .|+.+++.++++.|++++.     .+..|.||||.|
T Consensus        18 ~~~~l~A~~~g~~~~v~~lL~~~~~~~i---n~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~A   89 (743)
T TIGR00870        18 EKAFLPAAERGDLASVYRDLEEPKKLNI---NCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHAI   89 (743)
T ss_pred             HHHHHHHHHcCCHHHHHHHhccccccCC---CCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHHH
Confidence            5789999999999999999998  4444   345778999999 9999999999999999886     577899999999


Q ss_pred             HhcC---CHHHHHHHHhcCCcc---------ccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccc----------
Q 048253           79 SQKV---HVDKIKALLQVNPAW---------CFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATM----------  135 (323)
Q Consensus        79 ~~~g---~~~~v~~Ll~~~~~~---------~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~----------  135 (323)
                      +..+   ...+++++...+.+.         .......| ||||+|+..|+.+++++|++ .+++++.++          
T Consensus        90 ~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~-~GAdv~~~~~~~~~~~~~~  168 (743)
T TIGR00870        90 SLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLE-RGASVPARACGDFFVKSQG  168 (743)
T ss_pred             HhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHh-CCCCCCcCcCCchhhcCCC
Confidence            9732   233445555444321         11223568 99999999999999999999 788887542          


Q ss_pred             ----cccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHh
Q 048253          136 ----IWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLT  211 (323)
Q Consensus       136 ----~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll  211 (323)
                          ..|+||||.|+..|+.+++++|+++|++   ++.+|..|+||||+|+..+....+-.++..        .+.++++
T Consensus       169 ~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gad---in~~d~~g~T~Lh~A~~~~~~~~~~~~l~~--------~~~~~l~  237 (743)
T TIGR00870       169 VDSFYHGESPLNAAACLGSPSIVALLSEDPAD---ILTADSLGNTLLHLLVMENEFKAEYEELSC--------QMYNFAL  237 (743)
T ss_pred             CCcccccccHHHHHHHhCCHHHHHHHhcCCcc---hhhHhhhhhHHHHHHHhhhhhhHHHHHHHH--------HHHHHHH
Confidence                3589999999999999999999999998   999999999999999998743111111110        3344444


Q ss_pred             hccc--ccc----cccccCCCchhhhhhhccCCCchhhhHHHH
Q 048253          212 TRTM--IEV----NALNANGFMALDTLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       212 ~~g~--~~~----~~~d~~g~tpl~~A~~~~~~~~~~~i~~~L  248 (323)
                      +.+.  .+.    ++.|++|.||+|+|++    .++.++.++|
T Consensus       238 ~ll~~~~~~~el~~i~N~~g~TPL~~A~~----~g~~~l~~lL  276 (743)
T TIGR00870       238 SLLDKLRDSKELEVILNHQGLTPLKLAAK----EGRIVLFRLK  276 (743)
T ss_pred             HHHhccCChHhhhhhcCCCCCCchhhhhh----cCCccHHHHH
Confidence            4430  233    7789999999999999    8899999988

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.96  E-value=1.6e-27  Score=236.21  Aligned_cols=175  Identities=23%  Similarity=0.211  Sum_probs=161.9

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHH
Q 048253           34 NCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAA  112 (323)
Q Consensus        34 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~  112 (323)
                      +..+.++||.||..|+.++++.|++.|.++ +..|..|+||||+|+..|+.+++++|+++|+++ +.+|.+| ||||+|+
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~-n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi-n~~d~~G~TpL~~A~  599 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAKLDP-DIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV-HIRDANGNTALWNAI  599 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCC-CCcCCCCCCHHHHHH
Confidence            345789999999999999999999999998 899999999999999999999999999999998 8899999 9999999


Q ss_pred             HhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHH
Q 048253          113 MKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLV  192 (323)
Q Consensus       113 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~  192 (323)
                      ..|+.+++++|++ .+...+  ...+.++||.|+..|+.+++++|+++|++   +|.+|.+|+||||+|+..|+.     
T Consensus       600 ~~g~~~iv~~L~~-~~~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gad---in~~d~~G~TpLh~A~~~g~~-----  668 (823)
T PLN03192        600 SAKHHKIFRILYH-FASISD--PHAAGDLLCTAAKRNDLTAMKELLKQGLN---VDSEDHQGATALQVAMAEDHV-----  668 (823)
T ss_pred             HhCCHHHHHHHHh-cCcccC--cccCchHHHHHHHhCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHCCcH-----
Confidence            9999999999998 554443  34577999999999999999999999999   999999999999999999999     


Q ss_pred             HHHHHHhhcchHHHHHHHhhcccccccccccCC-Cchhhhhhh
Q 048253          193 ELVEEYCHSKWGYVIRFLTTRTMIEVNALNANG-FMALDTLAQ  234 (323)
Q Consensus       193 ~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g-~tpl~~A~~  234 (323)
                                  +++++|+++| ++++..|..| .||.+++..
T Consensus       669 ------------~iv~~Ll~~G-Adv~~~~~~g~~t~~~l~~~  698 (823)
T PLN03192        669 ------------DMVRLLIMNG-ADVDKANTDDDFSPTELREL  698 (823)
T ss_pred             ------------HHHHHHHHcC-CCCCCCCCCCCCCHHHHHHH
Confidence                        9999999999 9999999998 999988755

>PHA02792 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.4e-27  Score=221.98  Aligned_cols=235  Identities=10%  Similarity=0.005  Sum_probs=186.8

Q ss_pred             CcHHH-HHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHH-cCCHHHHHHHHHhCCCc----------------
Q 048253            2 KSMLY-EAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAAL-LGHVDFEGEIRRQKPEL----------------   63 (323)
Q Consensus         2 ~t~L~-~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~-~g~~~~v~~Ll~~~~~~----------------   63 (323)
                      .+++| .|+.+|++|+|++|+++|++++..   +..|.+|+|+|+. .++.|++++|+++|++.                
T Consensus        72 ~~~~~~~~s~n~~lElvk~LI~~GAdvN~~---~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~  148 (631)
T PHA02792         72 FDIFEYLCSDNIDIELLKLLISKGLEINSI---KNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQIT  148 (631)
T ss_pred             ccHHHHHHHhcccHHHHHHHHHcCCCcccc---cCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcc
Confidence            34554 466789999999999999998655   5568999999966 69999999999999762                


Q ss_pred             -------------------ccccCCCCCcHHHHHHhcC-------CHHHHHHHHhcCCccccccCCCC-cHHHHHHHhC-
Q 048253           64 -------------------AGELDSNQFSALHIASQKV-------HVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKG-  115 (323)
Q Consensus        64 -------------------~~~~~~~g~tpL~~A~~~g-------~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g-  115 (323)
                                         .+..|..|.||||+|+..+       +.|+++.|+++|+++ +..|..| ||||+|+.+. 
T Consensus       149 ~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~-~~~d~~g~t~l~~~~~~~~  227 (631)
T PHA02792        149 RAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEM-RYYTYREHTTLYYYVDKCD  227 (631)
T ss_pred             cccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCc-CccCCCCChHHHHHHHccc
Confidence                               2345677999999999999       899999999999999 8888899 9999999998 


Q ss_pred             -CHHHHHHHHHhCCCc----------------------cc----------------------------------------
Q 048253          116 -RIDVLEELFRTRPLA----------------------AS----------------------------------------  132 (323)
Q Consensus       116 -~~~~v~~Ll~~~~~~----------------------~~----------------------------------------  132 (323)
                       +.|++++|++. ...                      ++                                        
T Consensus       228 i~~ei~~~L~~~-~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  306 (631)
T PHA02792        228 IKREIFDALFDS-NYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSI  306 (631)
T ss_pred             chHHHHHHHHhc-cccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHH
Confidence             78888877662 110                      00                                        


Q ss_pred             ---------------------------ccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCC--CcHHHHHHh
Q 048253          133 ---------------------------ATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYG--MTITQLAVA  183 (323)
Q Consensus       133 ---------------------------~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g--~t~Lh~A~~  183 (323)
                                                 ........+++.|+..|+.+++++|+++|++   ++.+|.+|  .||||+|+.
T Consensus       307 q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GAD---IN~kD~~g~~~TpLh~A~~  383 (631)
T PHA02792        307 QDLLSEYVSYHTVYINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNV---VVEDDDNIINIMPLFPTLS  383 (631)
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCc---hhhhcCCCCChhHHHHHHH
Confidence                                       0001244568889999999999999999999   88888775  599998776


Q ss_pred             hcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhhccCCCchhhhHHHHhhh-------HHHHH
Q 048253          184 VKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDKKDWEIEDWKMIG-------WKKMR  256 (323)
Q Consensus       184 ~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~~~~~~~~~~i~~~L~~~-------~~~~~  256 (323)
                      ....              ...+++++|+++| +++|.+|..|.||||+|+.    .++.+++++|-..       +..+.
T Consensus       384 n~~~--------------~v~~IlklLIs~G-ADIN~kD~~G~TPLh~Aa~----~~n~eivelLLs~GADIN~kD~~G~  444 (631)
T PHA02792        384 IHES--------------DVLSILKLCKPYI-DDINKIDKHGRSILYYCIE----SHSVSLVEWLIDNGADINITTKYGS  444 (631)
T ss_pred             hccH--------------hHHHHHHHHHhcC-CccccccccCcchHHHHHH----cCCHHHHHHHHHCCCCCCCcCCCCC
Confidence            5544              0114688899999 8999999999999999999    8999999998333       34455


Q ss_pred             HHHHHHH
Q 048253          257 NALMVVA  263 (323)
Q Consensus       257 ~~~~~~~  263 (323)
                      ++++++.
T Consensus       445 TpL~~A~  451 (631)
T PHA02792        445 TCIGICV  451 (631)
T ss_pred             CHHHHHH
Confidence            6666554

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.95  E-value=3.9e-27  Score=233.44  Aligned_cols=175  Identities=22%  Similarity=0.201  Sum_probs=159.9

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHh
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQ   80 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~   80 (323)
                      +.++||.||..|+.++++.|++.+.+++.   .|..|+||||+|+..|+.+++++|+++|+++ +.+|.+|+||||+|+.
T Consensus       525 ~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~---~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi-n~~d~~G~TpL~~A~~  600 (823)
T PLN03192        525 MASNLLTVASTGNAALLEELLKAKLDPDI---GDSKGRTPLHIAASKGYEDCVLVLLKHACNV-HIRDANGNTALWNAIS  600 (823)
T ss_pred             chhHHHHHHHcCCHHHHHHHHHCCCCCCC---CCCCCCCHHHHHHHcChHHHHHHHHhcCCCC-CCcCCCCCCHHHHHHH
Confidence            35789999999999999999999988744   4788999999999999999999999999998 9999999999999999


Q ss_pred             cCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHh
Q 048253           81 KVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLD  159 (323)
Q Consensus        81 ~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~  159 (323)
                      .|+.+++++|++.++..   ....+ ++||.|+..|+.+++++|++ .+++++.+|.+|+||||+|+..|+.+++++|++
T Consensus       601 ~g~~~iv~~L~~~~~~~---~~~~~~~~L~~Aa~~g~~~~v~~Ll~-~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~  676 (823)
T PLN03192        601 AKHHKIFRILYHFASIS---DPHAAGDLLCTAAKRNDLTAMKELLK-QGLNVDSEDHQGATALQVAMAEDHVDMVRLLIM  676 (823)
T ss_pred             hCCHHHHHHHHhcCccc---CcccCchHHHHHHHhCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHH
Confidence            99999999999887654   23456 99999999999999999999 899999999999999999999999999999999


Q ss_pred             CCCCCCCCcccccCC-CcHHHHHHhhcc
Q 048253          160 NMDDPQFLNAEDDYG-MTITQLAVAVKL  186 (323)
Q Consensus       160 ~g~~~~~~~~~d~~g-~t~Lh~A~~~~~  186 (323)
                      +|++   ++.+|..| .||++++.....
T Consensus       677 ~GAd---v~~~~~~g~~t~~~l~~~~~~  701 (823)
T PLN03192        677 NGAD---VDKANTDDDFSPTELRELLQK  701 (823)
T ss_pred             cCCC---CCCCCCCCCCCHHHHHHHHHH
Confidence            9999   88999888 999988765443

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.95  E-value=5.8e-28  Score=191.50  Aligned_cols=200  Identities=23%  Similarity=0.175  Sum_probs=164.0

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHh
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQ   80 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~   80 (323)
                      |+++++.|+-+|+...+..++.+++..++.   +-.+.+|+.+++...+.+.+..+.+.   .+|..|+.|.|||.+|+.
T Consensus        96 g~~~~~v~ap~~s~~k~sttltN~~rgnev---s~~p~s~~slsVhql~L~~~~~~~~n---~VN~~De~GfTpLiWAaa  169 (296)
T KOG0502|consen   96 GWSALLVAAPCGSVDKVSTTLTNGARGNEV---SLMPWSPLSLSVHQLHLDVVDLLVNN---KVNACDEFGFTPLIWAAA  169 (296)
T ss_pred             hhhhhhhcCCCCCcceeeeeecccccCCcc---ccccCChhhHHHHHHHHHHHHHHhhc---cccCccccCchHhHHHHh
Confidence            556677777777777777777777665443   55578888888888877777666553   348889999999999999


Q ss_pred             cCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHh
Q 048253           81 KVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLD  159 (323)
Q Consensus        81 ~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~  159 (323)
                      +|++++|++|++.|+++ ....+.. ++|.+|++.|..++|++|+. ++.++|..|.+|-|||-+|++.++.+|++.|+.
T Consensus       170 ~G~i~vV~fLL~~GAdp-~~lgk~resALsLAt~ggytdiV~lLL~-r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~  247 (296)
T KOG0502|consen  170 KGHIPVVQFLLNSGADP-DALGKYRESALSLATRGGYTDIVELLLT-REVDVNVYDWNGGTPLLYAVRGNHVKCVESLLN  247 (296)
T ss_pred             cCchHHHHHHHHcCCCh-hhhhhhhhhhHhHHhcCChHHHHHHHHh-cCCCcceeccCCCceeeeeecCChHHHHHHHHh
Confidence            99999999999999998 6666777 99999999999999999999 888899999999999999999999999999999


Q ss_pred             CCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhh
Q 048253          160 NMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALD  230 (323)
Q Consensus       160 ~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~  230 (323)
                      .|++   ++..|..|++++.+|+..|+.                  +|+..++.. ++.+.+|+.-+||+|
T Consensus       248 sGAd---~t~e~dsGy~~mdlAValGyr------------------~Vqqvie~h-~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  248 SGAD---VTQEDDSGYWIMDLAVALGYR------------------IVQQVIEKH-ALKLCQDSEKRTPLH  296 (296)
T ss_pred             cCCC---cccccccCCcHHHHHHHhhhH------------------HHHHHHHHH-HHHHhhcccCCCCCC
Confidence            9998   888999999999999988874                  566666665 677778877777765

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.94  E-value=3.7e-27  Score=186.95  Aligned_cols=216  Identities=23%  Similarity=0.188  Sum_probs=194.5

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHh
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQ   80 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~   80 (323)
                      |++.+--+.+.|+.+.+..++.-.++.++  ..+++|.+++|.|+-+|+.+.+..++..++.. +..+..+++|+.+++.
T Consensus        62 ge~~~~~~~~s~nsd~~v~s~~~~~~~~~--~t~p~g~~~~~v~ap~~s~~k~sttltN~~rg-nevs~~p~s~~slsVh  138 (296)
T KOG0502|consen   62 GESLLTVAVRSGNSDVAVQSAQLDPDAID--ETDPEGWSALLVAAPCGSVDKVSTTLTNGARG-NEVSLMPWSPLSLSVH  138 (296)
T ss_pred             CCcccchhhhcCCcHHHHHhhccCCCCCC--CCCchhhhhhhhcCCCCCcceeeeeecccccC-CccccccCChhhHHHH
Confidence            45667778889999988888877766433  34666999999999999999999999999887 8889999999999999


Q ss_pred             cCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHh
Q 048253           81 KVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLD  159 (323)
Q Consensus        81 ~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~  159 (323)
                      ..+.+.+..+.++.   .+..|+.| |||.+|+..|++++|++|++ .+++++.......++|.+|++.|..++|++||+
T Consensus       139 ql~L~~~~~~~~n~---VN~~De~GfTpLiWAaa~G~i~vV~fLL~-~GAdp~~lgk~resALsLAt~ggytdiV~lLL~  214 (296)
T KOG0502|consen  139 QLHLDVVDLLVNNK---VNACDEFGFTPLIWAAAKGHIPVVQFLLN-SGADPDALGKYRESALSLATRGGYTDIVELLLT  214 (296)
T ss_pred             HHHHHHHHHHhhcc---ccCccccCchHhHHHHhcCchHHHHHHHH-cCCChhhhhhhhhhhHhHHhcCChHHHHHHHHh
Confidence            98888887776543   36789999 99999999999999999999 999999999999999999999999999999999


Q ss_pred             CCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhhccCCC
Q 048253          160 NMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDK  239 (323)
Q Consensus       160 ~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~~~~~~  239 (323)
                      ++.+   +|.-|-+|-|||-+|++.++.                 ++++.|++.| +|++..+..|++++++|+.    .
T Consensus       215 r~vd---VNvyDwNGgTpLlyAvrgnhv-----------------kcve~Ll~sG-Ad~t~e~dsGy~~mdlAVa----l  269 (296)
T KOG0502|consen  215 REVD---VNVYDWNGGTPLLYAVRGNHV-----------------KCVESLLNSG-ADVTQEDDSGYWIMDLAVA----L  269 (296)
T ss_pred             cCCC---cceeccCCCceeeeeecCChH-----------------HHHHHHHhcC-CCcccccccCCcHHHHHHH----h
Confidence            9999   999999999999999999999                 9999999999 9999999999999999999    7


Q ss_pred             chhhhHHHH
Q 048253          240 KDWEIEDWK  248 (323)
Q Consensus       240 ~~~~i~~~L  248 (323)
                      |...+.+.+
T Consensus       270 Gyr~Vqqvi  278 (296)
T KOG0502|consen  270 GYRIVQQVI  278 (296)
T ss_pred             hhHHHHHHH
Confidence            877665555

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.94  E-value=1.1e-26  Score=213.13  Aligned_cols=206  Identities=25%  Similarity=0.282  Sum_probs=186.6

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHh
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQ   80 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~   80 (323)
                      |-|+||.|+.+|+.++++.|++..+.+.-.   |..|.+|||+|++.|+.++++.|+.++..+ +..+.+|.||||.|++
T Consensus        49 gfTalhha~Lng~~~is~llle~ea~ldl~---d~kg~~plhlaaw~g~~e~vkmll~q~d~~-na~~~e~~tplhlaaq  124 (854)
T KOG0507|consen   49 GFTLLHHAVLNGQNQISKLLLDYEALLDLC---DTKGILPLHLAAWNGNLEIVKMLLLQTDIL-NAVNIENETPLHLAAQ  124 (854)
T ss_pred             chhHHHHHHhcCchHHHHHHhcchhhhhhh---hccCcceEEehhhcCcchHHHHHHhcccCC-CcccccCcCccchhhh
Confidence            569999999999999999999999876333   567999999999999999999999999665 9999999999999999


Q ss_pred             cCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCc--------ccccccccccHHHHHHhhCch
Q 048253           81 KVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLA--------ASATMIWGETILHLCVKHNQL  151 (323)
Q Consensus        81 ~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~--------~~~~~~~g~t~Lh~A~~~g~~  151 (323)
                      +||.+++++|+++|++. ..++..+ |+|-.|++.|..++++.|++. .-+        ...++..+.+|||.|+++|+.
T Consensus       125 hgh~dvv~~Ll~~~adp-~i~nns~~t~ldlA~qfgr~~Vvq~ll~~-~~~~~~~~~~~~~~~~~~~~~plHlaakngh~  202 (854)
T KOG0507|consen  125 HGHLEVVFYLLKKNADP-FIRNNSKETVLDLASRFGRAEVVQMLLQK-KFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHV  202 (854)
T ss_pred             hcchHHHHHHHhcCCCc-cccCcccccHHHHHHHhhhhHHHHHHhhh-ccchhhcccCCCCCCCCCCcCCcchhhhcchH
Confidence            99999999999999999 7788888 999999999999999999984 111        123455688999999999999


Q ss_pred             hHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhh
Q 048253          152 DALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDT  231 (323)
Q Consensus       152 ~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~  231 (323)
                      ++++.|++.|.+   +|....+| |+||-|+..|..                 ++|.+|++.| ++..++|..|+|+|++
T Consensus       203 ~~~~~ll~ag~d---in~~t~~g-talheaalcgk~-----------------evvr~ll~~g-in~h~~n~~~qtaldi  260 (854)
T KOG0507|consen  203 ECMQALLEAGFD---INYTTEDG-TALHEAALCGKA-----------------EVVRFLLEIG-INTHIKNQHGQTALDI  260 (854)
T ss_pred             HHHHHHHhcCCC---cccccccc-hhhhhHhhcCcc-----------------hhhhHHHhhc-cccccccccchHHHHH
Confidence            999999999998   89888777 999999999999                 9999999999 8999999999999998


Q ss_pred             hhh
Q 048253          232 LAQ  234 (323)
Q Consensus       232 A~~  234 (323)
                      ..+
T Consensus       261 l~d  263 (854)
T KOG0507|consen  261 IID  263 (854)
T ss_pred             HHh
Confidence            776

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.93  E-value=1.2e-25  Score=199.57  Aligned_cols=203  Identities=20%  Similarity=0.201  Sum_probs=175.2

Q ss_pred             HHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCH
Q 048253            5 LYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHV   84 (323)
Q Consensus         5 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~   84 (323)
                      +..|++.|+.+-|..|+..++.++   ..+.+|.|+||-+|.-.+.+||++|+++++++ +.+|..||||||.|+..|+.
T Consensus        44 ~l~A~~~~d~~ev~~ll~~ga~~~---~~n~DglTalhq~~id~~~e~v~~l~e~ga~V-n~~d~e~wtPlhaaascg~~  119 (527)
T KOG0505|consen   44 FLEACSRGDLEEVRKLLNRGASPN---LCNVDGLTALHQACIDDNLEMVKFLVENGANV-NAQDNEGWTPLHAAASCGYL  119 (527)
T ss_pred             HHhccccccHHHHHHHhccCCCcc---ccCCccchhHHHHHhcccHHHHHHHHHhcCCc-cccccccCCcchhhcccccH
Confidence            567899999999999999998763   34667999999999999999999999999998 99999999999999999999


Q ss_pred             HHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHH--------------------------HHHHHHhCCCcccccccc
Q 048253           85 DKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDV--------------------------LEELFRTRPLAASATMIW  137 (323)
Q Consensus        85 ~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~--------------------------v~~Ll~~~~~~~~~~~~~  137 (323)
                      .++++|+..|+++ ...+..| .|+-.+...-..++                          +...+. .+...+..+..
T Consensus       120 ~i~~~li~~gA~~-~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~-~G~~~d~~~~r  197 (527)
T KOG0505|consen  120 NIVEYLIQHGANL-LAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLN-AGAELDARHAR  197 (527)
T ss_pred             HHHHHHHHhhhhh-hhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHh-ccccccccccc
Confidence            9999999999988 5555555 66544322211111                          122233 56667777778


Q ss_pred             cccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhccccc
Q 048253          138 GETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIE  217 (323)
Q Consensus       138 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~  217 (323)
                      |-|.||.|+.+|..++.++|++.|.+   ++.+|.+|+||||.|+.-|+.                 +++++|+++| ++
T Consensus       198 G~T~lHvAaa~Gy~e~~~lLl~ag~~---~~~~D~dgWtPlHAAA~Wg~~-----------------~~~elL~~~g-a~  256 (527)
T KOG0505|consen  198 GATALHVAAANGYTEVAALLLQAGYS---VNIKDYDGWTPLHAAAHWGQE-----------------DACELLVEHG-AD  256 (527)
T ss_pred             cchHHHHHHhhhHHHHHHHHHHhccC---cccccccCCCcccHHHHhhhH-----------------hHHHHHHHhh-cc
Confidence            99999999999999999999999988   999999999999999999999                 9999999999 89


Q ss_pred             ccccccCCCchhhhhhh
Q 048253          218 VNALNANGFMALDTLAQ  234 (323)
Q Consensus       218 ~~~~d~~g~tpl~~A~~  234 (323)
                      +++.+..|.||+++|..
T Consensus       257 ~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  257 MDAKTKMGETPLDVADE  273 (527)
T ss_pred             cchhhhcCCCCccchhh
Confidence            99999999999999988

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.93  E-value=2.7e-25  Score=218.94  Aligned_cols=205  Identities=21%  Similarity=0.130  Sum_probs=156.4

Q ss_pred             CCcHHH-HHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcC---CHHHHHHHHHhCCCc-----c----ccc
Q 048253            1 MKSMLY-EAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLG---HVDFEGEIRRQKPEL-----A----GEL   67 (323)
Q Consensus         1 g~t~L~-~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g---~~~~v~~Ll~~~~~~-----~----~~~   67 (323)
                      |+|||| .|+..++.++++.|++.+.       .+..|.||||.|+..+   ..++++.+.+.+.+.     .    ...
T Consensus        52 G~t~Lh~~A~~~~~~eiv~lLl~~g~-------~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~  124 (743)
T TIGR00870        52 GRSALFVAAIENENLELTELLLNLSC-------RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSE  124 (743)
T ss_pred             chhHHHHHHHhcChHHHHHHHHhCCC-------CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccc
Confidence            789999 9999999999999999886       2556999999999832   233444444444321     1    122


Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccC--------------CCC-cHHHHHHHhCCHHHHHHHHHhCCCccc
Q 048253           68 DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGD--------------LDG-SPLHLAAMKGRIDVLEELFRTRPLAAS  132 (323)
Q Consensus        68 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~--------------~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~  132 (323)
                      +..|.||||+|+.+|+.+++++|+++|+++ +.++              ..| ||||.|+..|+.+++++|++ .+++++
T Consensus       125 ~~~G~TpLhlAa~~~~~eiVklLL~~GAdv-~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~-~gadin  202 (743)
T TIGR00870       125 FTPGITALHLAAHRQNYEIVKLLLERGASV-PARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSE-DPADIL  202 (743)
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHhCCCCC-CcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhc-CCcchh
Confidence            356999999999999999999999999998 4332              358 99999999999999999999 889999


Q ss_pred             ccccccccHHHHHHhhC---------chhHHHHHHhCCCCCCCC----cccccCCCcHHHHHHhhcchhhhHHHHHHHHh
Q 048253          133 ATMIWGETILHLCVKHN---------QLDALKFLLDNMDDPQFL----NAEDDYGMTITQLAVAVKLCFQNLVELVEEYC  199 (323)
Q Consensus       133 ~~~~~g~t~Lh~A~~~g---------~~~~v~~Ll~~g~~~~~~----~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~  199 (323)
                      ..|..|+||||+|+..+         ...+.+++++.++.....    +..|.+|.||||+|+..|+.            
T Consensus       203 ~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~------------  270 (743)
T TIGR00870       203 TADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRI------------  270 (743)
T ss_pred             hHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCc------------
Confidence            99999999999999986         234667777666553223    67799999999999999999            


Q ss_pred             hcchHHHHHHHhhcccccccccccCCCchhhhh
Q 048253          200 HSKWGYVIRFLTTRTMIEVNALNANGFMALDTL  232 (323)
Q Consensus       200 ~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A  232 (323)
                           +++++|++.+ .+..........|.+.+
T Consensus       271 -----~l~~lLL~~~-~~~kk~~a~~~~~~~~~  297 (743)
T TIGR00870       271 -----VLFRLKLAIK-YKQKKFVAWPNGQQLLS  297 (743)
T ss_pred             -----cHHHHHHHHH-HhcceeeccCcchHhHh
Confidence                 8888888754 23333333344444433

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.93  E-value=2.9e-25  Score=203.89  Aligned_cols=237  Identities=20%  Similarity=0.154  Sum_probs=200.2

Q ss_pred             CcHHHHHHHhCCHHHHHHHhccCcc----------ccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCC
Q 048253            2 KSMLYEAALKGCEPTLLELLQQDQL----------IIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQ   71 (323)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~----------~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g   71 (323)
                      ++-|..|++.|+.+.+..||+....          ....+..|.+|.|+||.||.+|+.+++++|++..+-+ +..|..|
T Consensus         4 ~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~l-dl~d~kg   82 (854)
T KOG0507|consen    4 KQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALL-DLCDTKG   82 (854)
T ss_pred             hhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhh-hhhhccC
Confidence            4678899999999999999986422          1122335778999999999999999999999999887 8889999


Q ss_pred             CcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCc
Q 048253           72 FSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQ  150 (323)
Q Consensus        72 ~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~  150 (323)
                      .+|||+|+..|+.++++.++.++..+ +..+..| ||||.|++.|+.+++.+|++ .+++.-..|..+.|+|..|++.|.
T Consensus        83 ~~plhlaaw~g~~e~vkmll~q~d~~-na~~~e~~tplhlaaqhgh~dvv~~Ll~-~~adp~i~nns~~t~ldlA~qfgr  160 (854)
T KOG0507|consen   83 ILPLHLAAWNGNLEIVKMLLLQTDIL-NAVNIENETPLHLAAQHGHLEVVFYLLK-KNADPFIRNNSKETVLDLASRFGR  160 (854)
T ss_pred             cceEEehhhcCcchHHHHHHhcccCC-CcccccCcCccchhhhhcchHHHHHHHh-cCCCccccCcccccHHHHHHHhhh
Confidence            99999999999999999999999666 8888999 99999999999999999999 889999999999999999999999


Q ss_pred             hhHHHHHHhCCCCCC-----CCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCC
Q 048253          151 LDALKFLLDNMDDPQ-----FLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANG  225 (323)
Q Consensus       151 ~~~v~~Ll~~g~~~~-----~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g  225 (323)
                      .++++.|++......     -...++..+.+|||+|+++|+.                 ++++.|++.| .|+|...++|
T Consensus       161 ~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~-----------------~~~~~ll~ag-~din~~t~~g  222 (854)
T KOG0507|consen  161 AEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHV-----------------ECMQALLEAG-FDINYTTEDG  222 (854)
T ss_pred             hHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchH-----------------HHHHHHHhcC-CCcccccccc
Confidence            999999998632100     0234566788999999999999                 9999999999 8999888766


Q ss_pred             CchhhhhhhccCCCchhhhHHHHhhh-------HHHHHHHHHHHHH
Q 048253          226 FMALDTLAQSKRDKKDWEIEDWKMIG-------WKKMRNALMVVAS  264 (323)
Q Consensus       226 ~tpl~~A~~~~~~~~~~~i~~~L~~~-------~~~~~~~~~~~~~  264 (323)
                       |+||-|+.    .+..+++..|-..       ...+++++.++..
T Consensus       223 -talheaal----cgk~evvr~ll~~gin~h~~n~~~qtaldil~d  263 (854)
T KOG0507|consen  223 -TALHEAAL----CGKAEVVRFLLEIGINTHIKNQHGQTALDIIID  263 (854)
T ss_pred             -hhhhhHhh----cCcchhhhHHHhhccccccccccchHHHHHHHh
Confidence             89999999    7888888887221       3444555555443

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.92  E-value=4.7e-25  Score=187.00  Aligned_cols=160  Identities=17%  Similarity=0.178  Sum_probs=142.8

Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhc-----CCHHHHHHHHhcCCccccccCCCC-c
Q 048253           33 VNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQK-----VHVDKIKALLQVNPAWCFAGDLDG-S  106 (323)
Q Consensus        33 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~-----g~~~~v~~Ll~~~~~~~~~~~~~g-t  106 (323)
                      .|.+|+|+||||+.++++++|+.||+.|...++.+|+-|.||+++++..     .+.++|..|.+.| +++-.-...| |
T Consensus       264 aDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQT  342 (452)
T KOG0514|consen  264 ADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQHGQT  342 (452)
T ss_pred             hcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhhcch
Confidence            4677999999999999999999999999888899999999999999843     4678899998876 4424445667 9


Q ss_pred             HHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhC-CCCCCCCcccccCCCcHHHHHHhhc
Q 048253          107 PLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDN-MDDPQFLNAEDDYGMTITQLAVAVK  185 (323)
Q Consensus       107 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~d~~g~t~Lh~A~~~~  185 (323)
                      +|++|+.+|+.++++.|+. +++++|.+|.+|.|+|++|+++||.|++++||.. +++   +...|.+|.|+|.+|...|
T Consensus       343 ALMLAVSHGr~d~vk~LLa-cgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd---~sLtD~DgSTAl~IAleag  418 (452)
T KOG0514|consen  343 ALMLAVSHGRVDMVKALLA-CGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCD---ISLTDVDGSTALSIALEAG  418 (452)
T ss_pred             hhhhhhhcCcHHHHHHHHH-ccCCCccccCCccHHHhhhhhhChHHHHHHHhccCccc---ceeecCCCchhhhhHHhcC
Confidence            9999999999999999999 9999999999999999999999999999999975 345   7789999999999999999


Q ss_pred             chhhhHHHHHHHHhhcchHHHHHHHhhcc
Q 048253          186 LCFQNLVELVEEYCHSKWGYVIRFLTTRT  214 (323)
Q Consensus       186 ~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g  214 (323)
                      +.                 +|.-+|+.+-
T Consensus       419 h~-----------------eIa~mlYa~~  430 (452)
T KOG0514|consen  419 HR-----------------EIAVMLYAHM  430 (452)
T ss_pred             ch-----------------HHHHHHHHHH
Confidence            99                 9888887763

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.91  E-value=1.2e-24  Score=184.62  Aligned_cols=174  Identities=25%  Similarity=0.270  Sum_probs=152.7

Q ss_pred             CHHHHHHHHHhC----C----CcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHh-----
Q 048253           49 HVDFEGEIRRQK----P----ELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMK-----  114 (323)
Q Consensus        49 ~~~~v~~Ll~~~----~----~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~-----  114 (323)
                      +.+.|+..+..-    +    -++|..|.+|+|+||||+.++++++|+.||+.|..-...+++-| ||+++|+..     
T Consensus       238 ~pe~V~~~l~~f~als~~lL~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~  317 (452)
T KOG0514|consen  238 DPEQVEDYLAYFEALSPPLLEYVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQP  317 (452)
T ss_pred             CHHHHHHHHHHHHhcChHHHHHHhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcch
Confidence            566666544331    1    23578899999999999999999999999999876668999999 999998865     


Q ss_pred             CCHHHHHHHHHhCCCccccc-ccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHH
Q 048253          115 GRIDVLEELFRTRPLAASAT-MIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVE  193 (323)
Q Consensus       115 g~~~~v~~Ll~~~~~~~~~~-~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~  193 (323)
                      .+.++|..|++ .+ ++|.+ ...|+|+|++|+.+|+.++|+.||..|+|   +|.+|.+|.|+|++|+..|+.      
T Consensus       318 ~d~~vV~~LF~-mg-nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAd---VNiQDdDGSTALMCA~EHGhk------  386 (452)
T KOG0514|consen  318 ADRTVVERLFK-MG-DVNAKASQHGQTALMLAVSHGRVDMVKALLACGAD---VNIQDDDGSTALMCAAEHGHK------  386 (452)
T ss_pred             hhHHHHHHHHh-cc-CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCC---CccccCCccHHHhhhhhhChH------
Confidence            36889999998 33 34544 45699999999999999999999999999   999999999999999999999      


Q ss_pred             HHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhhccCCCchhhhHHHH
Q 048253          194 LVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       194 ~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~~~~~~~~~~i~~~L  248 (323)
                                 |++++|+....+|+...|.+|.|+|.+|.+    .|+.||.-+|
T Consensus       387 -----------EivklLLA~p~cd~sLtD~DgSTAl~IAle----agh~eIa~ml  426 (452)
T KOG0514|consen  387 -----------EIVKLLLAVPSCDISLTDVDGSTALSIALE----AGHREIAVML  426 (452)
T ss_pred             -----------HHHHHHhccCcccceeecCCCchhhhhHHh----cCchHHHHHH
Confidence                       999999999889999999999999999999    9999998888

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.91  E-value=1.7e-23  Score=168.44  Aligned_cols=137  Identities=18%  Similarity=0.142  Sum_probs=122.5

Q ss_pred             CCCCCCHHHHHHHcCCH----HHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHH---HHHHHhcCCccccccC-CCC
Q 048253           34 NCLSEFPLHAAALLGHV----DFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDK---IKALLQVNPAWCFAGD-LDG  105 (323)
Q Consensus        34 ~~~g~t~Lh~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~---v~~Ll~~~~~~~~~~~-~~g  105 (323)
                      +.++.++||.||+.|+.    +++++|++.+..+ +.+|..|+||||+|+..|+.+.   +++|++.|+++ +.++ ..|
T Consensus        17 ~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~-~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi-n~~d~~~g   94 (166)
T PHA02743         17 DEDEQNTFLRICRTGNIYELMEVAPFISGDGHLL-HRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADI-NARELGTG   94 (166)
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhh-hccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCC-CCCCCCCC
Confidence            55688999999999998    6666788888776 8889999999999999988654   89999999999 7777 578


Q ss_pred             -cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCC
Q 048253          106 -SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGM  175 (323)
Q Consensus       106 -t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~  175 (323)
                       ||||+|+..|+.+++++|++..+.+++..|..|+||||+|+..++.+++++|+++|++   ++.++..|.
T Consensus        95 ~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~---~~~~~~~~~  162 (166)
T PHA02743         95 NTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAV---CDDPLSIGL  162 (166)
T ss_pred             CcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcccCCc
Confidence             9999999999999999999657899999999999999999999999999999999998   888887764

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.90  E-value=3e-23  Score=166.96  Aligned_cols=144  Identities=15%  Similarity=0.106  Sum_probs=127.2

Q ss_pred             CCCcccccCCCCCcHHHHHHhcCCH----HHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHH---HHHHHHhCCCcc
Q 048253           60 KPELAGELDSNQFSALHIASQKVHV----DKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDV---LEELFRTRPLAA  131 (323)
Q Consensus        60 ~~~~~~~~~~~g~tpL~~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~---v~~Ll~~~~~~~  131 (323)
                      +.+. +..+.++.++||.||+.|+.    +++++|.+.|+.+ +.++..| ||||+|+..|+.+.   +++|++ .++++
T Consensus        10 ~~~~-~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~-~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~-~Gadi   86 (166)
T PHA02743         10 NLGA-VEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLL-HRYDHHGRQCTHMVAWYDRANAVMKIELLVN-MGADI   86 (166)
T ss_pred             chHH-hhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhh-hccCCCCCcHHHHHHHhCccCHHHHHHHHHH-cCCCC
Confidence            3344 55677888999999999998    6667788888887 7788999 99999999988654   789998 88999


Q ss_pred             cccc-cccccHHHHHHhhCchhHHHHHHh-CCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHH
Q 048253          132 SATM-IWGETILHLCVKHNQLDALKFLLD-NMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRF  209 (323)
Q Consensus       132 ~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~-~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~  209 (323)
                      +.++ ..|+||||+|+..++.+++++|++ .|++   ++.+|..|.||||+|+..++.                 +++++
T Consensus        87 n~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad---~~~~d~~g~tpL~~A~~~~~~-----------------~iv~~  146 (166)
T PHA02743         87 NARELGTGNTLLHIAASTKNYELAEWLCRQLGVN---LGAINYQHETAYHIAYKMRDR-----------------RMMEI  146 (166)
T ss_pred             CCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCC---ccCcCCCCCCHHHHHHHcCCH-----------------HHHHH
Confidence            9998 489999999999999999999995 7888   899999999999999999999                 99999


Q ss_pred             HhhcccccccccccCCCc
Q 048253          210 LTTRTMIEVNALNANGFM  227 (323)
Q Consensus       210 Ll~~g~~~~~~~d~~g~t  227 (323)
                      |+++| ++++.++..|..
T Consensus       147 Ll~~g-a~~~~~~~~~~~  163 (166)
T PHA02743        147 LRANG-AVCDDPLSIGLS  163 (166)
T ss_pred             HHHcC-CCCCCcccCCcc
Confidence            99998 899999888754

>PHA02741 hypothetical protein; Provisional

Probab=99.90  E-value=1.1e-22  Score=164.42  Aligned_cols=128  Identities=21%  Similarity=0.257  Sum_probs=114.8

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHh------CCCcccccCCCCCcHHHHHHhcCC----HHHHHHHHhcCCccccccCC
Q 048253           34 NCLSEFPLHAAALLGHVDFEGEIRRQ------KPELAGELDSNQFSALHIASQKVH----VDKIKALLQVNPAWCFAGDL  103 (323)
Q Consensus        34 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~------~~~~~~~~~~~g~tpL~~A~~~g~----~~~v~~Ll~~~~~~~~~~~~  103 (323)
                      |..|.||||+|+..|+.++++.|+..      ++++ +.+|..|+||||+|+..|+    .+++++|++.|+++ +.++.
T Consensus        18 ~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~i-n~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi-n~~~~   95 (169)
T PHA02741         18 NSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAAL-NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADI-NAQEM   95 (169)
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhh-hccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCC-CCCCc
Confidence            56699999999999999999998653      3555 8899999999999999998    58999999999998 76774


Q ss_pred             -CC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCC
Q 048253          104 -DG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDD  163 (323)
Q Consensus       104 -~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~  163 (323)
                       .| ||||+|+..++.+++++|++..+.+++..|.+|+||||+|+..++.+++++|++.++.
T Consensus        96 ~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         96 LEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence             88 9999999999999999999855889999999999999999999999999999987654

>PHA02741 hypothetical protein; Provisional

Probab=99.88  E-value=3.1e-22  Score=161.75  Aligned_cols=128  Identities=22%  Similarity=0.195  Sum_probs=115.4

Q ss_pred             cccCCCCCcHHHHHHhcCCHHHHHHHHhc------CCccccccCCCC-cHHHHHHHhCC----HHHHHHHHHhCCCcccc
Q 048253           65 GELDSNQFSALHIASQKVHVDKIKALLQV------NPAWCFAGDLDG-SPLHLAAMKGR----IDVLEELFRTRPLAASA  133 (323)
Q Consensus        65 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~------~~~~~~~~~~~g-t~L~~A~~~g~----~~~v~~Ll~~~~~~~~~  133 (323)
                      +.+|..|.||||+|++.|+.++++.|+..      |+++ +.+|..| ||||+|+..|+    .+++++|++ .+++++.
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~i-n~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~-~gadin~   92 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAAL-NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIE-LGADINA   92 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhh-hccCCCCCcHHHHHHHcCChHHHHHHHHHHHH-cCCCCCC
Confidence            45788999999999999999999998642      4666 7889999 99999999998    588999999 7899999


Q ss_pred             ccc-ccccHHHHHHhhCchhHHHHHHh-CCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHh
Q 048253          134 TMI-WGETILHLCVKHNQLDALKFLLD-NMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLT  211 (323)
Q Consensus       134 ~~~-~g~t~Lh~A~~~g~~~~v~~Ll~-~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll  211 (323)
                      ++. .|+||||+|+..++.+++++|++ .|++   ++.+|.+|.||||+|+..++.                 +++++|+
T Consensus        93 ~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~---~~~~n~~g~tpL~~A~~~~~~-----------------~iv~~L~  152 (169)
T PHA02741         93 QEMLEGDTALHLAAHRRDHDLAEWLCCQPGID---LHFCNADNKSPFELAIDNEDV-----------------AMMQILR  152 (169)
T ss_pred             CCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCC---CCcCCCCCCCHHHHHHHCCCH-----------------HHHHHHH
Confidence            885 89999999999999999999997 5887   899999999999999999999                 9999988


Q ss_pred             hcc
Q 048253          212 TRT  214 (323)
Q Consensus       212 ~~g  214 (323)
                      +.+
T Consensus       153 ~~~  155 (169)
T PHA02741        153 EIV  155 (169)
T ss_pred             HHH
Confidence            875

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.88  E-value=1e-21  Score=170.31  Aligned_cols=150  Identities=13%  Similarity=0.055  Sum_probs=128.6

Q ss_pred             CCCCC-CHHHHHHHcCCHHHHHHHHHhCCCccccc----CCCCCcHHHHHHhcCCHHHHHHHHhcCCcccccc-CCCC-c
Q 048253           34 NCLSE-FPLHAAALLGHVDFEGEIRRQKPELAGEL----DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAG-DLDG-S  106 (323)
Q Consensus        34 ~~~g~-t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~----~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~g-t  106 (323)
                      |..|. ++||.|+..|+.+++++|+++|+++ +.+    +..|.||||+|+..++.+++++|+++|+++ +.+ +..| |
T Consensus        29 d~~~~~~lL~~A~~~~~~eivk~LL~~GAdi-N~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADV-N~~~~~~g~T  106 (300)
T PHA02884         29 NKICIANILYSSIKFHYTDIIDAILKLGADP-EAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADV-NRYAEEAKIT  106 (300)
T ss_pred             CcCCCCHHHHHHHHcCCHHHHHHHHHCCCCc-cccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-CcccCCCCCC
Confidence            44455 5678888889999999999999998 766    468999999999999999999999999999 654 5678 9


Q ss_pred             HHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcc
Q 048253          107 PLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKL  186 (323)
Q Consensus       107 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~  186 (323)
                      |||.|+..++.+++++|++ .+++++.+|..|.||||+|+..++.+++..+...        ..+..+.+|++++   ++
T Consensus       107 pLh~Aa~~~~~eivklLL~-~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~---~n  174 (300)
T PHA02884        107 PLYISVLHGCLKCLEILLS-YGADINIQTNDMVTPIELALMICNNFLAFMICDN--------EISNFYKHPKKIL---IN  174 (300)
T ss_pred             HHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCC--------cccccccChhhhh---cc
Confidence            9999999999999999999 8999999999999999999999999888666532        2466778898875   35


Q ss_pred             hhhhHHHHHHHHhhcchHHHHHHHhhcc
Q 048253          187 CFQNLVELVEEYCHSKWGYVIRFLTTRT  214 (323)
Q Consensus       187 ~~~~~~~~l~~~~~~~~~~~v~~Ll~~g  214 (323)
                      .                 +++++|++++
T Consensus       175 ~-----------------ei~~~Lish~  185 (300)
T PHA02884        175 F-----------------DILKILVSHF  185 (300)
T ss_pred             H-----------------HHHHHHHHHH
Confidence            6                 8889998887

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.88  E-value=3.3e-22  Score=159.25  Aligned_cols=130  Identities=16%  Similarity=0.128  Sum_probs=109.8

Q ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHhC------CCcccccCCCCCcHHHHHHhcCCH---HHHHHHHhcCCcccccc
Q 048253           31 VGVNCLSEFPLHAAALLGHVDFEGEIRRQK------PELAGELDSNQFSALHIASQKVHV---DKIKALLQVNPAWCFAG  101 (323)
Q Consensus        31 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~------~~~~~~~~~~g~tpL~~A~~~g~~---~~v~~Ll~~~~~~~~~~  101 (323)
                      +..|..|.||||+||+.|+.  ++++...+      ...+..+|.+|+||||+|+..|+.   +++++|++.|+++ +.+
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi-n~~   87 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADI-NGK   87 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCc-ccc
Confidence            34567799999999999984  33333222      112355789999999999999987   4689999999998 667


Q ss_pred             C-CCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCC
Q 048253          102 D-LDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDD  163 (323)
Q Consensus       102 ~-~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~  163 (323)
                      + ..| ||||+|+..|+.+++++|++..+.+++..|..|+||||+|+..|+.+++++|+++|++
T Consensus        88 ~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~  151 (154)
T PHA02736         88 ERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQ  151 (154)
T ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            6 589 9999999999999999999856889999999999999999999999999999999987

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.88  E-value=1.1e-21  Score=169.97  Aligned_cols=150  Identities=14%  Similarity=0.067  Sum_probs=128.5

Q ss_pred             CcHHHHHHHhCCHHHHHHHhccCcccccccc-CCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccc-CCCCCcHHHHHH
Q 048253            2 KSMLYEAALKGCEPTLLELLQQDQLIIGRVG-VNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGEL-DSNQFSALHIAS   79 (323)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~g~tpL~~A~   79 (323)
                      .++||.|+..|+.+++++|++.|++++.... .+..|.||||+|+..|+.+++++|+++|+++ +.+ +..|.||||+|+
T Consensus        34 ~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADV-N~~~~~~g~TpLh~Aa  112 (300)
T PHA02884         34 ANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADV-NRYAEEAKITPLYISV  112 (300)
T ss_pred             CHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-CcccCCCCCCHHHHHH
Confidence            3678889999999999999999998754421 2457999999999999999999999999998 765 568999999999


Q ss_pred             hcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHH
Q 048253           80 QKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLL  158 (323)
Q Consensus        80 ~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll  158 (323)
                      ..++.+++++|+..|+++ +.++..| ||||+|+..++.+++..+..      ...+..+.+|++++   ++.+++++|+
T Consensus       113 ~~~~~eivklLL~~GAdi-n~kd~~G~TpL~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~---~n~ei~~~Li  182 (300)
T PHA02884        113 LHGCLKCLEILLSYGADI-NIQTNDMVTPIELALMICNNFLAFMICD------NEISNFYKHPKKIL---INFDILKILV  182 (300)
T ss_pred             HcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHhCChhHHHHhcC------CcccccccChhhhh---ccHHHHHHHH
Confidence            999999999999999999 8899999 99999999999888755543      12466778898875   4789999999


Q ss_pred             hCCC
Q 048253          159 DNMD  162 (323)
Q Consensus       159 ~~g~  162 (323)
                      +++.
T Consensus       183 sh~v  186 (300)
T PHA02884        183 SHFI  186 (300)
T ss_pred             HHHH
Confidence            9875

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.87  E-value=6.7e-22  Score=151.54  Aligned_cols=140  Identities=26%  Similarity=0.251  Sum_probs=122.4

Q ss_pred             HHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhH
Q 048253           75 LHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDA  153 (323)
Q Consensus        75 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~  153 (323)
                      +-+|+..+....|+.||+..++..+.+|.+| ||||.|++.|+.+|++.|+. ++++.+.+...|+||||.||.-.+.++
T Consensus        67 ~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~-~gAn~~a~T~~GWTPLhSAckWnN~~v  145 (228)
T KOG0512|consen   67 LLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLL-SGANKEAKTNEGWTPLHSACKWNNFEV  145 (228)
T ss_pred             HHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHH-ccCCcccccccCccchhhhhcccchhH
Confidence            5678888899999999999988889999999 99999999999999999998 888999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhh
Q 048253          154 LKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLA  233 (323)
Q Consensus       154 v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~  233 (323)
                      +.+||++|+|   +|+......||||+|+...+.+                ..+++|+....+++-.++..+.||+++|-
T Consensus       146 a~~LLqhgaD---VnA~t~g~ltpLhlaa~~rn~r----------------~t~~~Ll~dryi~pg~~nn~eeta~~iAR  206 (228)
T KOG0512|consen  146 AGRLLQHGAD---VNAQTKGLLTPLHLAAGNRNSR----------------DTLELLLHDRYIHPGLKNNLEETAFDIAR  206 (228)
T ss_pred             HHHHHhccCc---ccccccccchhhHHhhcccchH----------------HHHHHHhhccccChhhhcCccchHHHHHH
Confidence            9999999999   9999888899999998876662                66777766555888888999999999987


Q ss_pred             h
Q 048253          234 Q  234 (323)
Q Consensus       234 ~  234 (323)
                      +
T Consensus       207 R  207 (228)
T KOG0512|consen  207 R  207 (228)
T ss_pred             H
Confidence            7

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.86  E-value=7.5e-22  Score=157.19  Aligned_cols=131  Identities=15%  Similarity=0.148  Sum_probs=110.2

Q ss_pred             cccCCCCCcHHHHHHhcCCHHHHHHHHhcCC--c----cccccCCCC-cHHHHHHHhCCH---HHHHHHHHhCCCccccc
Q 048253           65 GELDSNQFSALHIASQKVHVDKIKALLQVNP--A----WCFAGDLDG-SPLHLAAMKGRI---DVLEELFRTRPLAASAT  134 (323)
Q Consensus        65 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~--~----~~~~~~~~g-t~L~~A~~~g~~---~~v~~Ll~~~~~~~~~~  134 (323)
                      +.+|.+|.||||+|++.|+.  ++++...+.  +    ....+|..| ||||+|+..|+.   +++++|++ .+++++.+
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~-~gadin~~   87 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLME-WGADINGK   87 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHH-cCCCcccc
Confidence            56788999999999999984  333332221  1    124568889 999999999986   46888999 78999999


Q ss_pred             c-cccccHHHHHHhhCchhHHHHHHh-CCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhh
Q 048253          135 M-IWGETILHLCVKHNQLDALKFLLD-NMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTT  212 (323)
Q Consensus       135 ~-~~g~t~Lh~A~~~g~~~~v~~Ll~-~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~  212 (323)
                      + ..|+||||+|+..++.+++++|++ .|++   ++.+|..|.||||+|+..++.                 +++++|++
T Consensus        88 ~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d---~n~~~~~g~tpL~~A~~~~~~-----------------~i~~~Ll~  147 (154)
T PHA02736         88 ERVFGNTPLHIAVYTQNYELATWLCNQPGVN---MEILNYAFKTPYYVACERHDA-----------------KMMNILRA  147 (154)
T ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC---CccccCCCCCHHHHHHHcCCH-----------------HHHHHHHH
Confidence            8 489999999999999999999997 4888   899999999999999999999                 99999999


Q ss_pred             ccccccc
Q 048253          213 RTMIEVN  219 (323)
Q Consensus       213 ~g~~~~~  219 (323)
                      .| ++++
T Consensus       148 ~g-a~~~  153 (154)
T PHA02736        148 KG-AQCK  153 (154)
T ss_pred             cC-CCCC
Confidence            88 6664

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.86  E-value=2.4e-22  Score=190.47  Aligned_cols=217  Identities=19%  Similarity=0.193  Sum_probs=197.4

Q ss_pred             CcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhc
Q 048253            2 KSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQK   81 (323)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~   81 (323)
                      +|+|..||..|+.|.|+.|+.+|+++...   |+.|.+||.+|+-.||..+|+.|+.+.+++....|+.+.|+|.+||..
T Consensus       758 ~t~LT~acaggh~e~vellv~rganiehr---dkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsg  834 (2131)
T KOG4369|consen  758 KTNLTSACAGGHREEVELLVVRGANIEHR---DKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSG  834 (2131)
T ss_pred             cccccccccCccHHHHHHHHHhccccccc---ccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCC
Confidence            68999999999999999999999987444   888999999999999999999999999999666789999999999999


Q ss_pred             CCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccc--cccccHHHHHHhhCchhHHHHHH
Q 048253           82 VHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATM--IWGETILHLCVKHNQLDALKFLL  158 (323)
Q Consensus        82 g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~--~~g~t~Lh~A~~~g~~~~v~~Ll  158 (323)
                      |..++|++||..|++- ..++-.. |||.+|...|..++++.|+. .+..++.+.  ..|-+||+.|..+|+.+.++.|+
T Consensus       835 gr~~vvelLl~~gank-ehrnvsDytPlsla~Sggy~~iI~~llS-~GseInSrtgSklgisPLmlatmngh~~at~~ll  912 (2131)
T KOG4369|consen  835 GRTRVVELLLNAGANK-EHRNVSDYTPLSLARSGGYTKIIHALLS-SGSEINSRTGSKLGISPLMLATMNGHQAATLSLL  912 (2131)
T ss_pred             CcchHHHHHHHhhccc-cccchhhcCchhhhcCcchHHHHHHHhh-cccccccccccccCcchhhhhhhccccHHHHHHh
Confidence            9999999999999998 6777777 99999999999999999999 777777654  56899999999999999999999


Q ss_pred             hCCCCCCCCccc-ccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhhccC
Q 048253          159 DNMDDPQFLNAE-DDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKR  237 (323)
Q Consensus       159 ~~g~~~~~~~~~-d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~~~~  237 (323)
                      +.|.|   +|+. ..+-+|+|-+|+..|+.                 ++|.+||... +++..+-+.|.|||+-++.   
T Consensus       913 ~~gsd---iNaqIeTNrnTaltla~fqgr~-----------------evv~lLLa~~-anvehRaktgltplme~As---  968 (2131)
T KOG4369|consen  913 QPGSD---INAQIETNRNTALTLALFQGRP-----------------EVVFLLLAAQ-ANVEHRAKTGLTPLMEMAS---  968 (2131)
T ss_pred             cccch---hccccccccccceeeccccCcc-----------------hHHHHHHHHh-hhhhhhcccCCcccchhhc---
Confidence            99988   8875 45678999999999999                 9999999877 8888999999999999988   


Q ss_pred             CCchhhhHHHH
Q 048253          238 DKKDWEIEDWK  248 (323)
Q Consensus       238 ~~~~~~i~~~L  248 (323)
                       .|..|+-.+|
T Consensus       969 -gGyvdvg~~l  978 (2131)
T KOG4369|consen  969 -GGYVDVGNLL  978 (2131)
T ss_pred             -CCccccchhh
Confidence             8888888887

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.86  E-value=1e-20  Score=145.11  Aligned_cols=154  Identities=22%  Similarity=0.215  Sum_probs=125.1

Q ss_pred             CHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCH
Q 048253           39 FPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRI  117 (323)
Q Consensus        39 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~  117 (323)
                      --+.+|+..+...-|+.||+..++.+|.+|.+|.||||-|+.+|+.+|++.|+..|++. ..+...| ||||-||.-.+.
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~-~a~T~~GWTPLhSAckWnN~  143 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANK-EAKTNEGWTPLHSACKWNNF  143 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCc-ccccccCccchhhhhcccch
Confidence            45678999999999999999999888999999999999999999999999999999998 8888889 999999999999


Q ss_pred             HHHHHHHHhCCCcccccccccccHHHHHHhhCchh-HHHHHHh-CCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHH
Q 048253          118 DVLEELFRTRPLAASATMIWGETILHLCVKHNQLD-ALKFLLD-NMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELV  195 (323)
Q Consensus       118 ~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~-~v~~Ll~-~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l  195 (323)
                      +++..|++ .+++++.......||||+|+...+.. .+++|+. .+.+   ...++..+.||+.+|-+.+-. ..+++.+
T Consensus       144 ~va~~LLq-hgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~---pg~~nn~eeta~~iARRT~~s-~~lfe~~  218 (228)
T KOG0512|consen  144 EVAGRLLQ-HGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIH---PGLKNNLEETAFDIARRTSMS-HYLFEIV  218 (228)
T ss_pred             hHHHHHHh-ccCcccccccccchhhHHhhcccchHHHHHHHhhccccC---hhhhcCccchHHHHHHHhhhh-HHHHHHH
Confidence            99999999 88999998888899999999876544 4455543 3444   566778889999998777544 3445554


Q ss_pred             HHH
Q 048253          196 EEY  198 (323)
Q Consensus       196 ~~~  198 (323)
                      .++
T Consensus       219 e~~  221 (228)
T KOG0512|consen  219 EGC  221 (228)
T ss_pred             HHH
Confidence            443

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.85  E-value=2e-21  Score=172.90  Aligned_cols=173  Identities=21%  Similarity=0.216  Sum_probs=148.2

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHh
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQ   80 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~   80 (323)
                      |.|+||.+|...+.+||++|++.+++++..   |..|+||||.|+..|+..++++|++.++++ ...|.+|..|.-++..
T Consensus        73 glTalhq~~id~~~e~v~~l~e~ga~Vn~~---d~e~wtPlhaaascg~~~i~~~li~~gA~~-~avNsdg~~P~dl~e~  148 (527)
T KOG0505|consen   73 GLTALHQACIDDNLEMVKFLVENGANVNAQ---DNEGWTPLHAAASCGYLNIVEYLIQHGANL-LAVNSDGNMPYDLAED  148 (527)
T ss_pred             cchhHHHHHhcccHHHHHHHHHhcCCcccc---ccccCCcchhhcccccHHHHHHHHHhhhhh-hhccCCCCCccccccC
Confidence            679999999999999999999999998655   888999999999999999999999999998 6677777777655422


Q ss_pred             cCC--------------H-------------HHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCccc
Q 048253           81 KVH--------------V-------------DKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAAS  132 (323)
Q Consensus        81 ~g~--------------~-------------~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~  132 (323)
                      .-.              +             ++-++ +..|... ......| |.||.|+..|..++.++|++ .+.+++
T Consensus       149 ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~-l~~G~~~-d~~~~rG~T~lHvAaa~Gy~e~~~lLl~-ag~~~~  225 (527)
T KOG0505|consen  149 EATLDVLETEMARQGIDIEAARKAEEQTMLDDARQW-LNAGAEL-DARHARGATALHVAAANGYTEVAALLLQ-AGYSVN  225 (527)
T ss_pred             cchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHH-Hhccccc-cccccccchHHHHHHhhhHHHHHHHHHH-hccCcc
Confidence            111              1             12222 2356666 5556668 99999999999999999999 889999


Q ss_pred             ccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHh
Q 048253          133 ATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVA  183 (323)
Q Consensus       133 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~  183 (323)
                      .+|.+|+||||.|+.-|+.++++.|+++|++   ++.....|.||+.+|..
T Consensus       226 ~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~---~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  226 IKDYDGWTPLHAAAHWGQEDACELLVEHGAD---MDAKTKMGETPLDVADE  273 (527)
T ss_pred             cccccCCCcccHHHHhhhHhHHHHHHHhhcc---cchhhhcCCCCccchhh
Confidence            9999999999999999999999999999999   99999999999998865

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.83  E-value=7.3e-21  Score=180.50  Aligned_cols=234  Identities=16%  Similarity=0.082  Sum_probs=202.5

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHh
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQ   80 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~   80 (323)
                      |-+||.+|+-.|+..+|+.|+...+++....  |..+.|+|-+||..|+.++|++||..+++. ..++-...|||.+|..
T Consensus       790 gf~plImaatagh~tvV~~llk~ha~veaQs--drtkdt~lSlacsggr~~vvelLl~~gank-ehrnvsDytPlsla~S  866 (2131)
T KOG4369|consen  790 GFVPLIMAATAGHITVVQDLLKAHADVEAQS--DRTKDTMLSLACSGGRTRVVELLLNAGANK-EHRNVSDYTPLSLARS  866 (2131)
T ss_pred             cchhhhhhcccCchHHHHHHHhhhhhhhhhc--ccccCceEEEecCCCcchHHHHHHHhhccc-cccchhhcCchhhhcC
Confidence            5689999999999999999999999875553  556999999999999999999999999988 8889999999999999


Q ss_pred             cCCHHHHHHHHhcCCcccccc-CCCC-cHHHHHHHhCCHHHHHHHHHhCCCccccc-ccccccHHHHHHhhCchhHHHHH
Q 048253           81 KVHVDKIKALLQVNPAWCFAG-DLDG-SPLHLAAMKGRIDVLEELFRTRPLAASAT-MIWGETILHLCVKHNQLDALKFL  157 (323)
Q Consensus        81 ~g~~~~v~~Ll~~~~~~~~~~-~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~g~t~Lh~A~~~g~~~~v~~L  157 (323)
                      .|..++++.|+..|.+++... .+.| .||.+|...|+.+.++.|++ .+.++|.. .-+.+|+|-+|+-.|+.+++.+|
T Consensus       867 ggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~-~gsdiNaqIeTNrnTaltla~fqgr~evv~lL  945 (2131)
T KOG4369|consen  867 GGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQ-PGSDINAQIETNRNTALTLALFQGRPEVVFLL  945 (2131)
T ss_pred             cchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhc-ccchhccccccccccceeeccccCcchHHHHH
Confidence            999999999999999883322 3457 99999999999999999999 77777754 44678999999999999999999


Q ss_pred             HhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhc--------------------chHHHHHHHhhccccc
Q 048253          158 LDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHS--------------------KWGYVIRFLTTRTMIE  217 (323)
Q Consensus       158 l~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~--------------------~~~~~v~~Ll~~g~~~  217 (323)
                      |.+.++   +..+-+.|-|||+-++..|..  ++.++|...+++                    +..+.|+.|+... +.
T Consensus       946 La~~an---vehRaktgltplme~AsgGyv--dvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~-at 1019 (2131)
T KOG4369|consen  946 LAAQAN---VEHRAKTGLTPLMEMASGGYV--DVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGD-AT 1019 (2131)
T ss_pred             HHHhhh---hhhhcccCCcccchhhcCCcc--ccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCc-cc
Confidence            998777   888889999999999999987  888888776533                    4457888888865 88


Q ss_pred             ccccccCCCchhhhhhhccCCCchhhhHHHH
Q 048253          218 VNALNANGFMALDTLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       218 ~~~~d~~g~tpl~~A~~~~~~~~~~~i~~~L  248 (323)
                      +.++|++|+|+|++|+.    .+.....++|
T Consensus      1020 v~v~NkkG~T~Lwla~~----Gg~lss~~il 1046 (2131)
T KOG4369|consen 1020 VRVPNKKGCTVLWLASA----GGALSSCPIL 1046 (2131)
T ss_pred             eecccCCCCcccchhcc----CCccccchHH
Confidence            99999999999999999    7777777777

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.80  E-value=3e-20  Score=153.56  Aligned_cols=133  Identities=24%  Similarity=0.219  Sum_probs=112.1

Q ss_pred             HHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHH
Q 048253           45 ALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEEL  123 (323)
Q Consensus        45 ~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~L  123 (323)
                      |+.|+.--|+.-++......|.-|..|.+|||+||+.|+..+++.|+.+|+.+ +..+... ||||+|+..|+.++|+.|
T Consensus         8 cregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarv-n~tnmgddtplhlaaahghrdivqkl   86 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARV-NSTNMGDDTPLHLAAAHGHRDIVQKL   86 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhccccc-ccccCCCCcchhhhhhcccHHHHHHH
Confidence            44455444454454444444888899999999999999999999999999998 7777766 999999999999999999


Q ss_pred             HHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHH
Q 048253          124 FRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV  182 (323)
Q Consensus       124 l~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~  182 (323)
                      ++ ..+++|..+..|+|||||||--|+..+++-|+..|+.   ++.-+++|.|||..|-
T Consensus        87 l~-~kadvnavnehgntplhyacfwgydqiaedli~~ga~---v~icnk~g~tpldkak  141 (448)
T KOG0195|consen   87 LS-RKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAA---VNICNKKGMTPLDKAK  141 (448)
T ss_pred             HH-HhcccchhhccCCCchhhhhhhcHHHHHHHHHhccce---eeecccCCCCchhhhc
Confidence            99 7889999999999999999999999999999999888   8888999999998773

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.80  E-value=2.1e-18  Score=160.79  Aligned_cols=235  Identities=21%  Similarity=0.239  Sum_probs=178.8

Q ss_pred             cHHHHHHHhCCHHHHHHHhccCccc------cccccCCCCCCCHHHHHHHc---CCHHHHHHHHHhCCCccccc----CC
Q 048253            3 SMLYEAALKGCEPTLLELLQQDQLI------IGRVGVNCLSEFPLHAAALL---GHVDFEGEIRRQKPELAGEL----DS   69 (323)
Q Consensus         3 t~L~~A~~~g~~~~v~~Ll~~~~~~------~~~~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~----~~   69 (323)
                      .++..|...+.++.+..|+......      -+...+..-|.|.||.|..+   ++.++++.|++.-+.+++..    ..
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            4567778888888887777765311      11222245699999999984   45699999999988766543    35


Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHhcCCcccccc-----------------------CCCC-cHHHHHHHhCCHHHHHHHHH
Q 048253           70 NQFSALHIASQKVHVDKIKALLQVNPAWCFAG-----------------------DLDG-SPLHLAAMKGRIDVLEELFR  125 (323)
Q Consensus        70 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~-----------------------~~~g-t~L~~A~~~g~~~~v~~Ll~  125 (323)
                      .|+||||+|+.+.+.++|++|++.|+|+. .+                       -.-| .||-+|+-.++.+++++|++
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~-aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~  261 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVH-ARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLA  261 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchh-hHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHh
Confidence            69999999999999999999999999883 22                       1237 89999999999999999999


Q ss_pred             hCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHH
Q 048253          126 TRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGY  205 (323)
Q Consensus       126 ~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~  205 (323)
                       .+++++.+|.+|+|.||..+.+-..++.+++++.|++ .+...+|..|-|||-+|++.|..                 +
T Consensus       262 -~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~-~l~~v~N~qgLTPLtLAaklGk~-----------------e  322 (782)
T KOG3676|consen  262 -HGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGAN-ALEHVRNNQGLTPLTLAAKLGKK-----------------E  322 (782)
T ss_pred             -cCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCC-ccccccccCCCChHHHHHHhhhH-----------------H
Confidence             9999999999999999999999999999999999998 56778899999999999999999                 6


Q ss_pred             HHHHHhhc-c------------ccccccccc--CCCchhhhhhhccCCCchh-----hhHHHHhhhHHHHHHH
Q 048253          206 VIRFLTTR-T------------MIEVNALNA--NGFMALDTLAQSKRDKKDW-----EIEDWKMIGWKKMRNA  258 (323)
Q Consensus       206 ~v~~Ll~~-g------------~~~~~~~d~--~g~tpl~~A~~~~~~~~~~-----~i~~~L~~~~~~~~~~  258 (323)
                      +.+.+++. .            ..+.+..|.  +-.+.|.+.+.. ....+.     -|.++|..+|+.-...
T Consensus       323 mf~~ile~~k~~~W~YGpvtsslYpL~~iDT~~n~~SvLeivvyg-~~~eHl~Ll~~~i~~LL~~KW~~f~k~  394 (782)
T KOG3676|consen  323 MFQHILERRKFTDWAYGPVTSSLYPLNSIDTIGNENSVLEIVVYG-IKNEHLELLDGPIEELLEDKWKAFGKK  394 (782)
T ss_pred             HHHHHHHhhcccceeecccccccccchhcccccchhhhhhhhhcC-CcHHHHHHHhHHHHHHHHHHHHHHhHH
Confidence            66666665 1            123333333  335666666663 223332     3445667777664433

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.79  E-value=1.4e-19  Score=149.55  Aligned_cols=150  Identities=21%  Similarity=0.147  Sum_probs=123.0

Q ss_pred             HHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHH
Q 048253            9 ALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIK   88 (323)
Q Consensus         9 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~   88 (323)
                      |+.|+.-.|+..++....  +.+.-|..|.+|||+||+.|+..+++.|+.+|+.+ |..|....||||+|+.+||.++|+
T Consensus         8 cregna~qvrlwld~teh--dln~gddhgfsplhwaakegh~aivemll~rgarv-n~tnmgddtplhlaaahghrdivq   84 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEH--DLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARV-NSTNMGDDTPLHLAAAHGHRDIVQ   84 (448)
T ss_pred             hhcCCeEEEEEEecCccc--ccccccccCcchhhhhhhcccHHHHHHHHhccccc-ccccCCCCcchhhhhhcccHHHHH
Confidence            455555455555554332  22334677999999999999999999999999998 899999999999999999999999


Q ss_pred             HHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCC
Q 048253           89 ALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDD  163 (323)
Q Consensus        89 ~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~  163 (323)
                      .|++..+++ +..+..| |||||||.-|...+.+-|+. +++.++..+..|.|||..|--.-...+.+.--++|.+
T Consensus        85 kll~~kadv-navnehgntplhyacfwgydqiaedli~-~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~  158 (448)
T KOG0195|consen   85 KLLSRKADV-NAVNEHGNTPLHYACFWGYDQIAEDLIS-CGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQS  158 (448)
T ss_pred             HHHHHhccc-chhhccCCCchhhhhhhcHHHHHHHHHh-ccceeeecccCCCCchhhhchHHHHHHHHHHHHhCCC
Confidence            999999999 8999999 99999999999999999999 9999999999999999887544333333333345555

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.78  E-value=1.6e-18  Score=124.78  Aligned_cols=85  Identities=27%  Similarity=0.273  Sum_probs=68.9

Q ss_pred             HHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCH
Q 048253            5 LYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHV   84 (323)
Q Consensus         5 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~   84 (323)
                      ||.||+.|+.+++++|++.+.++      +. |+||||+|+..|+.+++++|+++++++ +.+|..|+||||+|+..|+.
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~------~~-~~~~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~   72 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI------NL-GNTALHYAAENGNLEIVKLLLENGADI-NSQDKNGNTALHYAAENGNL   72 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT------TS-SSBHHHHHHHTTTHHHHHHHHHTTTCT-T-BSTTSSBHHHHHHHTTHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC------CC-CCCHHHHHHHcCCHHHHHHHHHhcccc-cccCCCCCCHHHHHHHcCCH
Confidence            68888888888888888877554      22 778888888888888888888888887 77888888888888888888


Q ss_pred             HHHHHHHhcCCcc
Q 048253           85 DKIKALLQVNPAW   97 (323)
Q Consensus        85 ~~v~~Ll~~~~~~   97 (323)
                      +++++|+++|+++
T Consensus        73 ~~~~~Ll~~g~~~   85 (89)
T PF12796_consen   73 EIVKLLLEHGADV   85 (89)
T ss_dssp             HHHHHHHHTTT-T
T ss_pred             HHHHHHHHcCCCC
Confidence            8888888888877

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.78  E-value=8e-18  Score=128.28  Aligned_cols=122  Identities=33%  Similarity=0.467  Sum_probs=106.3

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHH
Q 048253           34 NCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAA  112 (323)
Q Consensus        34 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~  112 (323)
                      |..|.||||+|+..|+.+++++|++.+... +..+..|.||+|.|+..+..+++++|++.++.+ +..+..+ ||+|+|+
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~l~~a~   81 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV-NARDKDGNTPLHLAA   81 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHH
Confidence            456899999999999999999999998876 778888999999999999999999999998776 6667778 9999999


Q ss_pred             HhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHH
Q 048253          113 MKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLL  158 (323)
Q Consensus       113 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll  158 (323)
                      ..++.+++++|++ .+...+..+..+.||+++|...++.+++++|+
T Consensus        82 ~~~~~~~~~~L~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          82 RNGNLDVVKLLLK-HGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HcCcHHHHHHHHH-cCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            9999999999998 66777888888999999999999999888874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.77  E-value=1.1e-17  Score=127.61  Aligned_cols=117  Identities=33%  Similarity=0.449  Sum_probs=108.6

Q ss_pred             ccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHH
Q 048253           66 ELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHL  144 (323)
Q Consensus        66 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~  144 (323)
                      .+|.+|.||||+|++.++.+++++|++.+.+. ...+..| +|+|.|+..++.+++++|++ .+..++..+..+.||+|+
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~l~~   79 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLE-KGADVNARDKDGNTPLHL   79 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHH
Confidence            35678999999999999999999999999987 6788889 99999999999999999999 666788888999999999


Q ss_pred             HHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcch
Q 048253          145 CVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLC  187 (323)
Q Consensus       145 A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~  187 (323)
                      |+..++.+++++|++++.+   ++..|..|.||+++|...++.
T Consensus        80 a~~~~~~~~~~~L~~~~~~---~~~~~~~~~~~l~~~~~~~~~  119 (126)
T cd00204          80 AARNGNLDVVKLLLKHGAD---VNARDKDGRTPLHLAAKNGHL  119 (126)
T ss_pred             HHHcCcHHHHHHHHHcCCC---CcccCCCCCCHHHHHHhcCCH
Confidence            9999999999999999877   888999999999999999988

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.77  E-value=4.3e-18  Score=122.47  Aligned_cols=89  Identities=29%  Similarity=0.468  Sum_probs=57.0

Q ss_pred             HHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcch
Q 048253          108 LHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLC  187 (323)
Q Consensus       108 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~  187 (323)
                      ||+|++.|+.+++++|++ .+.+++.    |+||||+|+..|+.+++++|+++|++   ++.+|.+|+||||+|+..++.
T Consensus         1 L~~A~~~~~~~~~~~ll~-~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~   72 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLE-KGADINL----GNTALHYAAENGNLEIVKLLLENGAD---INSQDKNGNTALHYAAENGNL   72 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHH-TTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTC---TT-BSTTSSBHHHHHHHTTHH
T ss_pred             CHHHHHcCCHHHHHHHHH-CcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhccc---ccccCCCCCCHHHHHHHcCCH
Confidence            566666666666666666 4444443    66677777777777777777776666   666666677777777776666


Q ss_pred             hhhHHHHHHHHhhcchHHHHHHHhhcccccccccc
Q 048253          188 FQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALN  222 (323)
Q Consensus       188 ~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d  222 (323)
                                       +++++|+++| ++++.+|
T Consensus        73 -----------------~~~~~Ll~~g-~~~~~~n   89 (89)
T PF12796_consen   73 -----------------EIVKLLLEHG-ADVNIRN   89 (89)
T ss_dssp             -----------------HHHHHHHHTT-T-TTSS-
T ss_pred             -----------------HHHHHHHHcC-CCCCCcC
Confidence                             6777777665 6666554

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.75  E-value=8.8e-18  Score=156.71  Aligned_cols=184  Identities=21%  Similarity=0.187  Sum_probs=156.3

Q ss_pred             CCHHHHHHHcCCHHHHHHHHHhC---------CCcccccCCCCCcHHHHHHh---cCCHHHHHHHHhcCCcccc----cc
Q 048253           38 EFPLHAAALLGHVDFEGEIRRQK---------PELAGELDSNQFSALHIASQ---KVHVDKIKALLQVNPAWCF----AG  101 (323)
Q Consensus        38 ~t~Lh~A~~~g~~~~v~~Ll~~~---------~~~~~~~~~~g~tpL~~A~~---~g~~~~v~~Ll~~~~~~~~----~~  101 (323)
                      +.++..|...+..+....|+...         .++ +.+...|.|.||.|.-   .++.++++.|++.-+...+    ..
T Consensus       102 ~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~-~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~e  180 (782)
T KOG3676|consen  102 RDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKL-NERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSE  180 (782)
T ss_pred             hhhhhhccccccHHHHhccchhhhhhhhhhhhhcc-ccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhH
Confidence            36788888889988888887665         233 6667889999999986   4567899999988665432    23


Q ss_pred             CCCC-cHHHHHHHhCCHHHHHHHHHhCCCccccc---------c--------------cccccHHHHHHhhCchhHHHHH
Q 048253          102 DLDG-SPLHLAAMKGRIDVLEELFRTRPLAASAT---------M--------------IWGETILHLCVKHNQLDALKFL  157 (323)
Q Consensus       102 ~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~---------~--------------~~g~t~Lh~A~~~g~~~~v~~L  157 (323)
                      ...| ||||.|+.+.+.++|++|++ .+++++.+         |              ..|+.||..||-.++.|++++|
T Consensus       181 eY~GqSaLHiAIv~~~~~~V~lLl~-~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlL  259 (782)
T KOG3676|consen  181 EYYGQSALHIAIVNRDAELVRLLLA-AGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLL  259 (782)
T ss_pred             hhcCcchHHHHHHhccHHHHHHHHH-cCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHH
Confidence            4568 99999999999999999999 88888753         1              2478899999999999999999


Q ss_pred             HhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhccccc--ccccccCCCchhhhhhhc
Q 048253          158 LDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIE--VNALNANGFMALDTLAQS  235 (323)
Q Consensus       158 l~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~--~~~~d~~g~tpl~~A~~~  235 (323)
                      +++|||   ++++|.+|||.||..+..-..                 ++-.+++++| ++  ..++|++|.|||.+|+. 
T Consensus       260 l~~gAd---~~aqDS~GNTVLH~lVi~~~~-----------------~My~~~L~~g-a~~l~~v~N~qgLTPLtLAak-  317 (782)
T KOG3676|consen  260 LAHGAD---PNAQDSNGNTVLHMLVIHFVT-----------------EMYDLALELG-ANALEHVRNNQGLTPLTLAAK-  317 (782)
T ss_pred             HhcCCC---CCccccCCChHHHHHHHHHHH-----------------HHHHHHHhcC-CCccccccccCCCChHHHHHH-
Confidence            999999   999999999999999988666                 8899999998 78  88999999999999999 


Q ss_pred             cCCCchhhhHHHH
Q 048253          236 KRDKKDWEIEDWK  248 (323)
Q Consensus       236 ~~~~~~~~i~~~L  248 (323)
                         .+..+|.+.+
T Consensus       318 ---lGk~emf~~i  327 (782)
T KOG3676|consen  318 ---LGKKEMFQHI  327 (782)
T ss_pred             ---hhhHHHHHHH
Confidence               8888887766

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.68  E-value=3.5e-16  Score=107.62  Aligned_cols=105  Identities=19%  Similarity=0.086  Sum_probs=88.0

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHh
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQ   80 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~   80 (323)
                      |+-.+.+++++|..+-|+..+..+-++++.    ..|++|||+|+.+|..+++++|+..|+++ +.+|+.|.|||..|+.
T Consensus         2 ~d~~~~W~vkNG~~DeVk~~v~~g~nVn~~----~ggR~plhyAAD~GQl~ilefli~iGA~i-~~kDKygITPLLsAvw   76 (117)
T KOG4214|consen    2 GDMSVAWNVKNGEIDEVKQSVNEGLNVNEI----YGGRTPLHYAADYGQLSILEFLISIGANI-QDKDKYGITPLLSAVW   76 (117)
T ss_pred             cchhHhhhhccCcHHHHHHHHHccccHHHH----hCCcccchHhhhcchHHHHHHHHHhcccc-CCccccCCcHHHHHHH
Confidence            344567889999999999999888666544    35899999999999999999999999998 8889999999999999


Q ss_pred             cCCHHHHHHHHhcCCccccccCCCCcHHHHH
Q 048253           81 KVHVDKIKALLQVNPAWCFAGDLDGSPLHLA  111 (323)
Q Consensus        81 ~g~~~~v~~Ll~~~~~~~~~~~~~gt~L~~A  111 (323)
                      .||.++|++|+++|++- ..+..+|+.+--|
T Consensus        77 EGH~~cVklLL~~GAdr-t~~~PdG~~~~ea  106 (117)
T KOG4214|consen   77 EGHRDCVKLLLQNGADR-TIHAPDGTALIEA  106 (117)
T ss_pred             HhhHHHHHHHHHcCccc-ceeCCCchhHHhh
Confidence            99999999999999988 7778888443333

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.65  E-value=8.1e-15  Score=123.48  Aligned_cols=128  Identities=28%  Similarity=0.337  Sum_probs=114.3

Q ss_pred             cccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCC-----HHHHHHHHHhCCC---cccccc
Q 048253           65 GELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGR-----IDVLEELFRTRPL---AASATM  135 (323)
Q Consensus        65 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~-----~~~v~~Ll~~~~~---~~~~~~  135 (323)
                      ...+..+.+++|.++..+..+++++++..+.++ +.++..| ||||+|+..++     .++++.|++ .++   ..+..|
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~-~g~~~~~~~~~~  144 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLE-AGADLDVNNLRD  144 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHH-cCCCCCCccccC
Confidence            556777899999999999999999999999999 8899999 99999999999     999999999 555   777779


Q ss_pred             cccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcc
Q 048253          136 IWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRT  214 (323)
Q Consensus       136 ~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g  214 (323)
                      ..|+||||+|+..|+.+++++|++.|++   ++.++..|.|+++.|+..++.                 ++++.+++.+
T Consensus       145 ~~g~tpl~~A~~~~~~~~~~~ll~~~~~---~~~~~~~g~t~l~~a~~~~~~-----------------~~~~~l~~~~  203 (235)
T COG0666         145 EDGNTPLHWAALNGDADIVELLLEAGAD---PNSRNSYGVTALDPAAKNGRI-----------------ELVKLLLDKG  203 (235)
T ss_pred             CCCCchhHHHHHcCchHHHHHHHhcCCC---CcccccCCCcchhhhcccchH-----------------HHHHHHHhcC
Confidence            9999999999999999999999999988   888899999999999999999                 8888888753

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.64  E-value=1.6e-15  Score=104.33  Aligned_cols=103  Identities=20%  Similarity=0.271  Sum_probs=63.9

Q ss_pred             HHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcch
Q 048253          108 LHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLC  187 (323)
Q Consensus       108 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~  187 (323)
                      +.+++++|..+-|+..+. .+.+++..- .|++|||+|+..|+.+++++|+..|++   ++.+|+.|-|||-.|+..|+.
T Consensus         6 ~~W~vkNG~~DeVk~~v~-~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~---i~~kDKygITPLLsAvwEGH~   80 (117)
T KOG4214|consen    6 VAWNVKNGEIDEVKQSVN-EGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGAN---IQDKDKYGITPLLSAVWEGHR   80 (117)
T ss_pred             HhhhhccCcHHHHHHHHH-ccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccc---cCCccccCCcHHHHHHHHhhH
Confidence            345566666666665555 344444432 566666666666666666666666666   666666666666666666666


Q ss_pred             hhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhh
Q 048253          188 FQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLA  233 (323)
Q Consensus       188 ~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~  233 (323)
                                       ++|++|++.| +|..++-.+|.+.++.+-
T Consensus        81 -----------------~cVklLL~~G-Adrt~~~PdG~~~~eate  108 (117)
T KOG4214|consen   81 -----------------DCVKLLLQNG-ADRTIHAPDGTALIEATE  108 (117)
T ss_pred             -----------------HHHHHHHHcC-cccceeCCCchhHHhhcc
Confidence                             6666666666 666666666666655443

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.62  E-value=1.3e-14  Score=122.31  Aligned_cols=126  Identities=26%  Similarity=0.376  Sum_probs=119.1

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCC-----HHHHHHHHhcCC--ccccccCCCC-
Q 048253           34 NCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVH-----VDKIKALLQVNP--AWCFAGDLDG-  105 (323)
Q Consensus        34 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~-----~~~v~~Ll~~~~--~~~~~~~~~g-  105 (323)
                      +..+.+++|.|+..+..+++++++..+.++ +.+|.+|.||||+|+..++     .+++++|++.|+  +....++..| 
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~  148 (235)
T COG0666          70 DLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGN  148 (235)
T ss_pred             CccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCC
Confidence            445889999999999999999999999999 9999999999999999999     999999999999  5657789999 


Q ss_pred             cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCC
Q 048253          106 SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNM  161 (323)
Q Consensus       106 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g  161 (323)
                      ||||+|+..|+.++++.|++ .+++++..+..|.|+++.|+..++.++++.+++.+
T Consensus       149 tpl~~A~~~~~~~~~~~ll~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         149 TPLHWAALNGDADIVELLLE-AGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             chhHHHHHcCchHHHHHHHh-cCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            99999999999999999999 78999999999999999999999999999999865

>PF13962 PGG: Domain of unknown function

Probab=99.59  E-value=4.5e-15  Score=111.03  Aligned_cols=70  Identities=40%  Similarity=0.599  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCcccCcc-chHHHHHHHHHHHHHHHHHHHHHhc
Q 048253          253 KKMRNALMVVASLTATMAFQAGVNPPHGPWQDTSFSSSQGHATAH-RYTCILFFNTTGFLASLSIILLLSI  322 (323)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~a~~~~pgg~~~~~~~~~~~~~~~~~-~f~~f~~~~~~~~~~s~~~~~~~~~  322 (323)
                      ++.++.+.+++++++|++|+++++||||+||++++.+.+....++ .|.+|+++|+++|++|+++++++++
T Consensus         5 ~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~~   75 (113)
T PF13962_consen    5 EDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLIS   75 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            888999999999999999999999999999998655555554555 9999999999999999999988874

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.53  E-value=2.3e-14  Score=92.53  Aligned_cols=54  Identities=26%  Similarity=0.382  Sum_probs=29.5

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHH
Q 048253           37 SEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALL   91 (323)
Q Consensus        37 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll   91 (323)
                      |+||||+|++.|+.+++++|++++.++ +.+|.+|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di-n~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI-NAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT-T-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            456666666666666666666666555 555666666666666666666666654

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.49  E-value=2e-14  Score=93.36  Aligned_cols=55  Identities=31%  Similarity=0.380  Sum_probs=32.8

Q ss_pred             HHhCC-CCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhh
Q 048253          157 LLDNM-DDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTL  232 (323)
Q Consensus       157 Ll~~g-~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A  232 (323)
                      |+++| ++   ++.+|..|+||||+|+..|+.                 +++++|++.| ++++++|.+|+||+|+|
T Consensus         1 LL~~~~~~---~n~~d~~G~T~LH~A~~~g~~-----------------~~v~~Ll~~g-~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPAD---VNAQDKYGNTPLHWAARYGHS-----------------EVVRLLLQNG-ADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T-----TT---TTS--HHHHHHHHT-H-----------------HHHHHHHHCT---TT---TTS--HHHH-
T ss_pred             CCccCcCC---CcCcCCCCCcHHHHHHHcCcH-----------------HHHHHHHHCc-CCCCCCcCCCCCHHHhC
Confidence            56666 45   999999999999999999999                 9999999777 99999999999999987

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.49  E-value=1.9e-13  Score=132.64  Aligned_cols=103  Identities=18%  Similarity=0.178  Sum_probs=72.6

Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchh
Q 048253           74 ALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLD  152 (323)
Q Consensus        74 pL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~  152 (323)
                      +|+.|+..|+.+.++.|++.|+++ +.+|..| ||||+|+..|+.+++++|++ .+++++..|..|+||||+|+..|+.+
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadi-n~~d~~G~TpLh~Aa~~g~~eiv~~LL~-~Gadvn~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADP-NCRDYDGRTPLHIACANGHVQVVRVLLE-FGADPTLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCCcHH
Confidence            466677777777777777777776 6667777 77777777777777777777 66777777777777777777777777


Q ss_pred             HHHHHHhC-------CCCCCCCcccccCCCcHHHHH
Q 048253          153 ALKFLLDN-------MDDPQFLNAEDDYGMTITQLA  181 (323)
Q Consensus       153 ~v~~Ll~~-------g~~~~~~~~~d~~g~t~Lh~A  181 (323)
                      ++++|+++       |++   .+..+..|.+|+..+
T Consensus       163 iv~~Ll~~~~~~~~~ga~---~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        163 VVQLLSRHSQCHFELGAN---AKPDSFTGKPPSLED  195 (664)
T ss_pred             HHHHHHhCCCcccccCCC---CCccccCCCCccchh
Confidence            77777776       555   555566666665543

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.49  E-value=1.3e-13  Score=133.68  Aligned_cols=106  Identities=18%  Similarity=0.104  Sum_probs=98.4

Q ss_pred             cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhc
Q 048253          106 SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVK  185 (323)
Q Consensus       106 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~  185 (323)
                      ..|+.|+..|+.+.++.|++ .+++++..|..|+||||+|+.+|+.+++++|+++|++   ++.+|.+|.||||+|+..+
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~-~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gad---vn~~d~~G~TpLh~A~~~g  159 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLT-GGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGAD---PTLLDKDGKTPLELAEENG  159 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHCC
Confidence            46889999999999999999 8899999999999999999999999999999999999   9999999999999999999


Q ss_pred             chhhhHHHHHHHHhhcchHHHHHHHhhc-------ccccccccccCCCchhhhhh
Q 048253          186 LCFQNLVELVEEYCHSKWGYVIRFLTTR-------TMIEVNALNANGFMALDTLA  233 (323)
Q Consensus       186 ~~~~~~~~~l~~~~~~~~~~~v~~Ll~~-------g~~~~~~~d~~g~tpl~~A~  233 (323)
                      +.                 +++++|+++       + ++++..+..|.+|+..+.
T Consensus       160 ~~-----------------~iv~~Ll~~~~~~~~~g-a~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        160 FR-----------------EVVQLLSRHSQCHFELG-ANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             cH-----------------HHHHHHHhCCCcccccC-CCCCccccCCCCccchhh
Confidence            99                 999999988       5 788888888888876654

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.48  E-value=3.7e-13  Score=111.76  Aligned_cols=120  Identities=18%  Similarity=0.166  Sum_probs=95.0

Q ss_pred             CcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhc
Q 048253            2 KSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQK   81 (323)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~   81 (323)
                      ++||..++-.|+.+-...||+.-.+++.   .|..|.|+|..|+..|+.++|+.|++.|+++...++..+.||||+|+..
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~vn~---~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALS   89 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQVNQ---RDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALS   89 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhhhhc---cCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHc
Confidence            3678888888888888888887554433   3777888888888888888888888888888777788888888888888


Q ss_pred             CCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHH
Q 048253           82 VHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFR  125 (323)
Q Consensus        82 g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~  125 (323)
                      |+.++.++|++.|+.. ...+.-| |+-..|+.-|+-++|..+-.
T Consensus        90 Gn~dvcrllldaGa~~-~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   90 GNQDVCRLLLDAGARM-YLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             CCchHHHHHHhccCcc-ccccchhhhHHHHHHHhcchHHHHHHhc
Confidence            8888888888888887 6677777 88888888888777765533

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.48  E-value=1.2e-13  Score=89.05  Aligned_cols=54  Identities=26%  Similarity=0.159  Sum_probs=44.9

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIR   57 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll   57 (323)
                      |+||||.|++.|+.+++++|++++.+++..   |.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~---d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQ---DEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B----TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCC---CCCCCCHHHHHHHccCHHHHHHHC
Confidence            789999999999999999999999887554   778999999999999999999986

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.46  E-value=6.3e-14  Score=90.95  Aligned_cols=56  Identities=30%  Similarity=0.412  Sum_probs=30.2

Q ss_pred             HHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHH
Q 048253          123 LFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLA  181 (323)
Q Consensus       123 Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A  181 (323)
                      |+++.+.+++..|..|+||||+|+.+|+.+++++|++.|++   ++.+|.+|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d---~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGAD---PNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT-----TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCC---CCCCcCCCCCHHHhC
Confidence            45534578888888888888888888888888888888888   888888888888876

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.43  E-value=1.1e-12  Score=109.04  Aligned_cols=122  Identities=16%  Similarity=0.134  Sum_probs=112.2

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhC
Q 048253           37 SEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKG  115 (323)
Q Consensus        37 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g  115 (323)
                      -..||.-|...|..+-...||+.-..+ +.+|..|.+||..|+..|+.+++++|++.|++++..++..+ ||||+|+.+|
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~v-n~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSG   90 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQV-NQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSG   90 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhh-hccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcC
Confidence            568999999999999999999986555 89999999999999999999999999999999977777778 9999999999


Q ss_pred             CHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhC
Q 048253          116 RIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDN  160 (323)
Q Consensus       116 ~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~  160 (323)
                      +.++.+.|++ .|+.....+.-|+|+-..|+--|+.++|..+-.+
T Consensus        91 n~dvcrllld-aGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   91 NQDVCRLLLD-AGARMYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             CchHHHHHHh-ccCccccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            9999999999 8899999999999999999999999999876443

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.43  E-value=4.2e-13  Score=119.69  Aligned_cols=118  Identities=18%  Similarity=0.161  Sum_probs=102.5

Q ss_pred             HHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcch
Q 048253          108 LHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLC  187 (323)
Q Consensus       108 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~  187 (323)
                      |.-|+..|..++|+-.+. .-.++...+.+|-|+||-|+..||.++|++|++.|++   +|..|.+|+||||+|+..++.
T Consensus       554 LLDaaLeGEldlVq~~i~-ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~gan---VNa~DSdGWTPLHCAASCNnv  629 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIY-EVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGAN---VNAADSDGWTPLHCAASCNNV  629 (752)
T ss_pred             HHhhhhcchHHHHHHHHH-hhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCc---ccCccCCCCchhhhhhhcCch
Confidence            345888999999999998 6778888899999999999999999999999999999   999999999999999999999


Q ss_pred             hhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhhccCCCchhhhHHHH
Q 048253          188 FQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       188 ~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~~~~~~~~~~i~~~L  248 (323)
                                       -+++.|++.|.+-+-.+-.++.||.+-.-+  .+.|..++.++|
T Consensus       630 -----------------~~ckqLVe~GaavfAsTlSDmeTa~eKCee--~eeGY~~CsqyL  671 (752)
T KOG0515|consen  630 -----------------PMCKQLVESGAAVFASTLSDMETAAEKCEE--MEEGYDQCSQYL  671 (752)
T ss_pred             -----------------HHHHHHHhccceEEeeecccccchhhhcch--hhhhHHHHHHHH
Confidence                             999999999965555667888999876544  345667777777

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.40  E-value=1.4e-12  Score=116.41  Aligned_cols=117  Identities=25%  Similarity=0.290  Sum_probs=94.0

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHH
Q 048253           41 LHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDV  119 (323)
Q Consensus        41 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~  119 (323)
                      |.-|+..|.+|+|+..+..-.|+ ...|.+|.|+||-|+-.||.+||++|++.|+++ +..|.+| ||||+|+.+++..+
T Consensus       554 LLDaaLeGEldlVq~~i~ev~Dp-SqpNdEGITaLHNAiCaghyeIVkFLi~~ganV-Na~DSdGWTPLHCAASCNnv~~  631 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDP-SQPNDEGITALHNAICAGHYEIVKFLIEFGANV-NAADSDGWTPLHCAASCNNVPM  631 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCC-CCCCccchhHHhhhhhcchhHHHHHHHhcCCcc-cCccCCCCchhhhhhhcCchHH
Confidence            34588888999999888887777 778888999999999999999999999999998 8888999 99999999999999


Q ss_pred             HHHHHHhCCCcccccccccccHHHHHH--hhCchhHHHHHHh
Q 048253          120 LEELFRTRPLAASATMIWGETILHLCV--KHNQLDALKFLLD  159 (323)
Q Consensus       120 v~~Ll~~~~~~~~~~~~~g~t~Lh~A~--~~g~~~~v~~Ll~  159 (323)
                      ++.|++.+++.+-..-.++.|+..-+-  +.|...|.+||-.
T Consensus       632 ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  632 CKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             HHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            999998444444445566777776653  4577888888854

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=99.00  E-value=1.5e-09  Score=98.06  Aligned_cols=117  Identities=22%  Similarity=0.137  Sum_probs=80.6

Q ss_pred             HHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCC-CcccccCCCCCcHHHHHHhcCC
Q 048253            5 LYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKP-ELAGELDSNQFSALHIASQKVH   83 (323)
Q Consensus         5 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~g~tpL~~A~~~g~   83 (323)
                      +..|+..+++-.++..-..|.+....   +.+..+.||+|+..|+-++|+|+|++++ .+++..|..|.|+||-|+-.++
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~---~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~  946 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQ---GPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRN  946 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEee---CcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcc
Confidence            45566666666666666666554322   5556777777777777777777777765 3445666777777777777777


Q ss_pred             HHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHH
Q 048253           84 VDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFR  125 (323)
Q Consensus        84 ~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~  125 (323)
                      ..++++|++.|+.+ ...|..| ||-..|-+.|+.++..+|-+
T Consensus       947 r~vc~~lvdagasl-~ktd~kg~tp~eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  947 RAVCQLLVDAGASL-RKTDSKGKTPQERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             hHHHHHHHhcchhh-eecccCCCChHHHHHhcCCchHHHHHhh
Confidence            77777777777777 6677777 77777777777777777655

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.98  E-value=3.4e-10  Score=106.36  Aligned_cols=91  Identities=20%  Similarity=0.190  Sum_probs=64.5

Q ss_pred             HHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccc-cccHHHHHHhhCchhHHHHHHhCCCCCCC
Q 048253           89 ALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIW-GETILHLCVKHNQLDALKFLLDNMDDPQF  166 (323)
Q Consensus        89 ~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~  166 (323)
                      ++-+.+.+..+.+|..| |+||.|+..+..++++||++ .|.+++.+|.+ |+||||-|+..|+.+++.+||++|+.   
T Consensus        36 F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlq-hGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S---  111 (1267)
T KOG0783|consen   36 FSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQ-HGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS---  111 (1267)
T ss_pred             HHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHh-cCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCc---
Confidence            44444555556677777 77777777777777777777 57777766653 77777777777777777777777766   


Q ss_pred             CcccccCCCcHHHHHHh
Q 048253          167 LNAEDDYGMTITQLAVA  183 (323)
Q Consensus       167 ~~~~d~~g~t~Lh~A~~  183 (323)
                      +..+|++|.+||...++
T Consensus       112 L~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  112 LRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             eEEecccCCCHHHHHhh
Confidence            67777777777776665

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.88  E-value=5.1e-09  Score=94.72  Aligned_cols=116  Identities=16%  Similarity=0.159  Sum_probs=98.2

Q ss_pred             HHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchh
Q 048253          109 HLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCF  188 (323)
Q Consensus       109 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~  188 (323)
                      ..|+..++.--++..-. ++.++..++.+..+.||+|+..|+-++|+|+|++|.. .+++..|..|+|+||.|+..++. 
T Consensus       871 l~av~~~D~~klqE~h~-~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~-elld~~de~get~lhkaa~~~~r-  947 (1004)
T KOG0782|consen  871 LRAVLSSDLMKLQETHL-NGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPS-ELLDMADETGETALHKAACQRNR-  947 (1004)
T ss_pred             HHHHHhccHHHHHHHHh-cCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCH-HHHHHHhhhhhHHHHHHHHhcch-
Confidence            34444444333333333 5777888899999999999999999999999999864 55788899999999999999998 


Q ss_pred             hhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhhccCCCchhhhHHHH
Q 048253          189 QNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       189 ~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~~~~~~~~~~i~~~L  248 (323)
                                      .+.++|++.| +..-.+|..|.||-.-|.+    .++.++..+|
T Consensus       948 ----------------~vc~~lvdag-asl~ktd~kg~tp~eraqq----a~d~dlaayl  986 (1004)
T KOG0782|consen  948 ----------------AVCQLLVDAG-ASLRKTDSKGKTPQERAQQ----AGDPDLAAYL  986 (1004)
T ss_pred             ----------------HHHHHHHhcc-hhheecccCCCChHHHHHh----cCCchHHHHH
Confidence                            9999999998 8999999999999999999    8999999998

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.86  E-value=1.9e-09  Score=95.46  Aligned_cols=89  Identities=20%  Similarity=0.127  Sum_probs=83.8

Q ss_pred             cccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhccc
Q 048253          136 IWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTM  215 (323)
Q Consensus       136 ~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~  215 (323)
                      .++..++++|++.|....++.+.-.|.|   ++.+|.+.+|+||.|+..|+.                 +++++|++.-+
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D---~~~~DyD~RTaLHvAAaEG~v-----------------~v~kfl~~~~k  563 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMD---LETKDYDDRTALHVAAAEGHV-----------------EVVKFLLNACK  563 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhccc---ccccccccchhheeecccCce-----------------eHHHHHHHHHc
Confidence            4466789999999999999988888888   999999999999999999999                 99999999988


Q ss_pred             ccccccccCCCchhhhhhhccCCCchhhhHHHH
Q 048253          216 IEVNALNANGFMALDTLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       216 ~~~~~~d~~g~tpl~~A~~~~~~~~~~~i~~~L  248 (323)
                      ++++.+|+.|+|||+-|..    .++.+++++|
T Consensus       564 v~~~~kDRw~rtPlDdA~~----F~h~~v~k~L  592 (622)
T KOG0506|consen  564 VDPDPKDRWGRTPLDDAKH----FKHKEVVKLL  592 (622)
T ss_pred             CCCChhhccCCCcchHhHh----cCcHHHHHHH
Confidence            9999999999999999999    9999999999

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.85  E-value=2.8e-09  Score=94.46  Aligned_cols=94  Identities=17%  Similarity=0.285  Sum_probs=83.6

Q ss_pred             cCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHH
Q 048253           67 LDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLC  145 (323)
Q Consensus        67 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A  145 (323)
                      ++.++..++++|++.|.+..++.+.-.|.+. ..+|.+. |+||.|+..|+++++++|++....+++.+|.+|+|||.-|
T Consensus       502 ~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~-~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA  580 (622)
T KOG0506|consen  502 RENDTVINVMYAAKNGDLSALRRFALQGMDL-ETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDA  580 (622)
T ss_pred             ccccchhhhhhhhhcCCHHHHHHHHHhcccc-cccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHh
Confidence            3456678899999999999999999999998 8888888 9999999999999999999988999999999999999999


Q ss_pred             HhhCchhHHHHHHhCC
Q 048253          146 VKHNQLDALKFLLDNM  161 (323)
Q Consensus       146 ~~~g~~~~v~~Ll~~g  161 (323)
                      ...+|.+++++|-+..
T Consensus       581 ~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  581 KHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             HhcCcHHHHHHHHHHh
Confidence            9999999999987753

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.79  E-value=4.3e-08  Score=87.49  Aligned_cols=85  Identities=18%  Similarity=0.165  Sum_probs=72.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHH
Q 048253           40 PLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRID  118 (323)
Q Consensus        40 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~  118 (323)
                      -||..++.|+.+..-.|+..|++....--..|.||||+|++.|+.--+++|+-.|+++ ...|.+| ||+.+|-..||-+
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~-~a~d~~GmtP~~~AR~~gH~~  214 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADP-GAQDSSGMTPVDYARQGGHHE  214 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCC-CCCCCCCCcHHHHHHhcCchH
Confidence            4899999999999999999999884334456899999999999999999999999998 8899999 9999999999877


Q ss_pred             HHHHHHH
Q 048253          119 VLEELFR  125 (323)
Q Consensus       119 ~v~~Ll~  125 (323)
                      +.+-|++
T Consensus       215 laeRl~e  221 (669)
T KOG0818|consen  215 LAERLVE  221 (669)
T ss_pred             HHHHHHH
Confidence            7665555

>PF13606 Ank_3: Ankyrin repeat

Probab=98.78  E-value=9e-09  Score=57.12  Aligned_cols=27  Identities=22%  Similarity=0.372  Sum_probs=16.6

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCCCc
Q 048253           37 SEFPLHAAALLGHVDFEGEIRRQKPEL   63 (323)
Q Consensus        37 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~   63 (323)
                      |+||||+||..|+.+++++|+++|+++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            566666666666666666666665554

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.78  E-value=5.5e-09  Score=98.45  Aligned_cols=79  Identities=22%  Similarity=0.193  Sum_probs=45.9

Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccC-CCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHH
Q 048253           33 VNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELD-SNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHL  110 (323)
Q Consensus        33 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~  110 (323)
                      .|..|+|+||+|+..|..+++++|+++|.++ ..+| ..|+||||-|+..|+++++-+||.+|..+ ..+|++| +||..
T Consensus        48 kD~~GR~alH~~~S~~k~~~l~wLlqhGidv-~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL-~i~Dkeglsplq~  125 (1267)
T KOG0783|consen   48 KDRYGRTALHIAVSENKNSFLRWLLQHGIDV-FVQDEESGYTALHRAIYYGNIDCASLLLSKGRSL-RIKDKEGLSPLQF  125 (1267)
T ss_pred             HHhhccceeeeeeccchhHHHHHHHhcCcee-eeccccccchHhhHhhhhchHHHHHHHHhcCCce-EEecccCCCHHHH
Confidence            4555666666666666666666666666555 4444 33666666666666666666666666555 5566666 66554


Q ss_pred             HHH
Q 048253          111 AAM  113 (323)
Q Consensus       111 A~~  113 (323)
                      -++
T Consensus       126 ~~r  128 (1267)
T KOG0783|consen  126 LSR  128 (1267)
T ss_pred             Hhh
Confidence            433

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.74  E-value=2.8e-08  Score=89.59  Aligned_cols=90  Identities=20%  Similarity=0.127  Sum_probs=74.2

Q ss_pred             HHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCC
Q 048253            4 MLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVH   83 (323)
Q Consensus         4 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~   83 (323)
                      |||.++...+.+-+..++..... ......|..|+||||.|+..|+.+.++.|+..++++ ..+|+.|++|||.|+..|+
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~-~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVS-LVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADV-SIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhh-ceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCc-cccccccccHHHHHHHcCC
Confidence            48999988888777765554422 234456778999999999999999999999999998 8999999999999999999


Q ss_pred             HHHHHHHHhcCC
Q 048253           84 VDKIKALLQVNP   95 (323)
Q Consensus        84 ~~~v~~Ll~~~~   95 (323)
                      .+++..++.+-.
T Consensus       101 ~q~i~~vlr~~~  112 (560)
T KOG0522|consen  101 EQIITEVLRHLK  112 (560)
T ss_pred             HHHHHHHHHHhH
Confidence            988888776643

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.74  E-value=3.5e-08  Score=88.07  Aligned_cols=94  Identities=22%  Similarity=0.200  Sum_probs=83.4

Q ss_pred             ccCCCCCcH------HHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCccccccccc
Q 048253           66 ELDSNQFSA------LHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWG  138 (323)
Q Consensus        66 ~~~~~g~tp------L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g  138 (323)
                      -+|.+|.|.      ||..++.|+.+..-.|+..|++.+......| ||||.|++.|+..-+++|+- +|++++..|.+|
T Consensus       122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~v-YGAD~~a~d~~G  200 (669)
T KOG0818|consen  122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAV-YGADPGAQDSSG  200 (669)
T ss_pred             CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhh-ccCCCCCCCCCC
Confidence            356666654      8999999999999999999999976666778 99999999999999999998 999999999999


Q ss_pred             ccHHHHHHhhCchhHHHHHHhC
Q 048253          139 ETILHLCVKHNQLDALKFLLDN  160 (323)
Q Consensus       139 ~t~Lh~A~~~g~~~~v~~Ll~~  160 (323)
                      +||+.+|-..||.++.+.|++.
T Consensus       201 mtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  201 MTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             CcHHHHHHhcCchHHHHHHHHH
Confidence            9999999999999888777653

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.72  E-value=2.1e-08  Score=57.18  Aligned_cols=31  Identities=29%  Similarity=0.413  Sum_probs=20.1

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCCCcccccC
Q 048253           37 SEFPLHAAALLGHVDFEGEIRRQKPELAGELD   68 (323)
Q Consensus        37 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~   68 (323)
                      |.||||+|+..|+.+++++|+++|+++ +.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADI-NARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCT-TCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCC-CCCC
Confidence            666666666666666666666666665 4443

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.69  E-value=2.3e-08  Score=55.49  Aligned_cols=27  Identities=33%  Similarity=0.598  Sum_probs=22.5

Q ss_pred             ccccHHHHHHhhCchhHHHHHHhCCCC
Q 048253          137 WGETILHLCVKHNQLDALKFLLDNMDD  163 (323)
Q Consensus       137 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~  163 (323)
                      +|+||||+|+++|+.+++++|+++|++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gad   27 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGAD   27 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            478888888888888888888888877

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.67  E-value=3.6e-08  Score=56.24  Aligned_cols=32  Identities=38%  Similarity=0.520  Sum_probs=26.5

Q ss_pred             ccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccc
Q 048253          137 WGETILHLCVKHNQLDALKFLLDNMDDPQFLNAED  171 (323)
Q Consensus       137 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d  171 (323)
                      +|+||||+|+..|+.+++++|+++|++   ++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~---~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGAD---INARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSC---TTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCC---CCCCC
Confidence            478888888888888888888888888   66665

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.55  E-value=2.3e-07  Score=84.48  Aligned_cols=84  Identities=19%  Similarity=0.169  Sum_probs=49.9

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCc--c-cccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCC
Q 048253           41 LHAAALLGHVDFEGEIRRQKPEL--A-GELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGR  116 (323)
Q Consensus        41 Lh~A~~~g~~~~v~~Ll~~~~~~--~-~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~  116 (323)
                      |.-|+.-.++..+-.||.+|...  . ...+.+|+|+||+||+.|++.+.++|+.+|.++ ..+|.+| |+|.||-+.|.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv-~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDV-MARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccc-eecccCCchhhhhHhhccc
Confidence            44555555566666666655321  1 122344566666666666666666666666666 6666666 66666666666


Q ss_pred             HHHHHHHHH
Q 048253          117 IDVLEELFR  125 (323)
Q Consensus       117 ~~~v~~Ll~  125 (323)
                      .+++..|+.
T Consensus       707 qec~d~llq  715 (749)
T KOG0705|consen  707 QECIDVLLQ  715 (749)
T ss_pred             HHHHHHHHH
Confidence            666666666

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.52  E-value=2.2e-07  Score=83.91  Aligned_cols=86  Identities=27%  Similarity=0.320  Sum_probs=64.1

Q ss_pred             cHHHHHHHhCCHHHHHHH-HHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhh
Q 048253          106 SPLHLAAMKGRIDVLEEL-FRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAV  184 (323)
Q Consensus       106 t~L~~A~~~g~~~~v~~L-l~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~  184 (323)
                      .|+|+++.....+-+... .......++..|..|+||||+|+.-|+.+.++.|+..|++   +..+|++|++|||-|+..
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad---v~~kN~~gWs~L~EAv~~   98 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD---VSIKNNEGWSPLHEAVST   98 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC---ccccccccccHHHHHHHc
Confidence            348888877766655443 3334566777888888888888888888888888888888   788888888888888888


Q ss_pred             cchhhhHHHHH
Q 048253          185 KLCFQNLVELV  195 (323)
Q Consensus       185 ~~~~~~~~~~l  195 (323)
                      |+. +.+.+.|
T Consensus        99 g~~-q~i~~vl  108 (560)
T KOG0522|consen   99 GNE-QIITEVL  108 (560)
T ss_pred             CCH-HHHHHHH
Confidence            886 3333444

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.45  E-value=6.1e-07  Score=81.76  Aligned_cols=89  Identities=24%  Similarity=0.211  Sum_probs=73.4

Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCcc--c-cccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhC
Q 048253           74 ALHIASQKVHVDKIKALLQVNPAW--C-FAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHN  149 (323)
Q Consensus        74 pL~~A~~~g~~~~v~~Ll~~~~~~--~-~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g  149 (323)
                      -|.-|.....+..+-+||.+|...  + ...+.+| |+||+|++.|++.+.++|+- ++.++..+|..|+|+|.||-+.|
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiW-yg~dv~~rda~g~t~l~yar~a~  705 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIW-YGVDVMARDAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHH-hCccceecccCCchhhhhHhhcc
Confidence            355666666778888888887643  1 2334566 99999999999999999998 89999999999999999999999


Q ss_pred             chhHHHHHHhCCCC
Q 048253          150 QLDALKFLLDNMDD  163 (323)
Q Consensus       150 ~~~~v~~Ll~~g~~  163 (323)
                      ..+++..|+++|+.
T Consensus       706 sqec~d~llq~gcp  719 (749)
T KOG0705|consen  706 SQECIDVLLQYGCP  719 (749)
T ss_pred             cHHHHHHHHHcCCC
Confidence            99999999999864

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.40  E-value=2.5e-07  Score=90.28  Aligned_cols=88  Identities=27%  Similarity=0.307  Sum_probs=79.8

Q ss_pred             cccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhccc
Q 048253          136 IWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTM  215 (323)
Q Consensus       136 ~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~  215 (323)
                      ..|.|+||.|+..+..-++++|+++|++   +|..|..|+||||.+...|+.                 ..+..|+++| 
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~---vn~~d~~g~~plh~~~~~g~~-----------------~~~~~ll~~~-  712 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGAD---VNALDSKGRTPLHHATASGHT-----------------SIACLLLKRG-  712 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCc---chhhhccCCCcchhhhhhccc-----------------chhhhhcccc-
Confidence            3678999999999999999999999999   999999999999999999999                 9999999988 


Q ss_pred             ccccccccCCCchhhhhhhccCCCchhhhHHHH
Q 048253          216 IEVNALNANGFMALDTLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       216 ~~~~~~d~~g~tpl~~A~~~~~~~~~~~i~~~L  248 (323)
                      ++.++.+.+|++|+++|.+    ..+.+++-++
T Consensus       713 a~~~a~~~~~~~~l~~a~~----~~~~d~~~l~  741 (785)
T KOG0521|consen  713 ADPNAFDPDGKLPLDIAME----AANADIVLLL  741 (785)
T ss_pred             ccccccCccCcchhhHHhh----hccccHHHHH
Confidence            9999999999999999999    5555555554

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.39  E-value=1.5e-06  Score=83.02  Aligned_cols=115  Identities=24%  Similarity=0.185  Sum_probs=68.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCC---cccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCCcHHHHHHHhCC
Q 048253           40 PLHAAALLGHVDFEGEIRRQKPE---LAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGR  116 (323)
Q Consensus        40 ~Lh~A~~~g~~~~v~~Ll~~~~~---~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~gt~L~~A~~~g~  116 (323)
                      -...|++.|+.-.|+..++....   .+|..|.-|+++|+.|..+.+.|++++|++.....       |.+|.+|+..|.
T Consensus        28 ~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~~  100 (822)
T KOG3609|consen   28 GFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVGS  100 (822)
T ss_pred             HHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHHHH
Confidence            35566666666666666655432   23555666666666666666666666666654332       346666666666


Q ss_pred             HHHHHHHHHhCCCcc----------cccccccccHHHHHHhhCchhHHHHHHhCCC
Q 048253          117 IDVLEELFRTRPLAA----------SATMIWGETILHLCVKHNQLDALKFLLDNMD  162 (323)
Q Consensus       117 ~~~v~~Ll~~~~~~~----------~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~  162 (323)
                      .+.|+.++.+ ....          ...-..+.|||..||..++.|+++.|+++|+
T Consensus       101 v~~VE~ll~~-~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~  155 (822)
T KOG3609|consen  101 VPLVELLLVH-FVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGH  155 (822)
T ss_pred             HHHHHHHHhc-ccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCC
Confidence            6666666662 2111          0112235667777777777777777777664

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.32  E-value=2.3e-06  Score=81.75  Aligned_cols=121  Identities=19%  Similarity=0.106  Sum_probs=96.3

Q ss_pred             HHHHHHHhCCHHHHHHHhccCcc-ccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcC
Q 048253            4 MLYEAALKGCEPTLLELLQQDQL-IIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKV   82 (323)
Q Consensus         4 ~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g   82 (323)
                      ....|+..|+...|+..++.... ....+..|.-|+++|+.|+.+.+.+++++|+++....        ..+|.+|+..|
T Consensus        28 ~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~aI~~~   99 (822)
T KOG3609|consen   28 GFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLLAIAVG   99 (822)
T ss_pred             HHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHHHHHHH
Confidence            35679999999999999997654 1233446888999999999999999999999986543        45899999999


Q ss_pred             CHHHHHHHHhcCCcc---------ccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccc
Q 048253           83 HVDKIKALLQVNPAW---------CFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASA  133 (323)
Q Consensus        83 ~~~~v~~Ll~~~~~~---------~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~  133 (323)
                      ..+.|+.++.+....         ....-..+ ||+.+||..++.|+++.|+. .+..+..
T Consensus       100 ~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~-kg~~i~~  159 (822)
T KOG3609|consen  100 SVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLT-RGHCIPI  159 (822)
T ss_pred             HHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHH-cCCCCCC
Confidence            999999999873321         12334456 99999999999999999999 5554443

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.25  E-value=1e-06  Score=86.02  Aligned_cols=81  Identities=26%  Similarity=0.194  Sum_probs=75.8

Q ss_pred             CCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHH
Q 048253          103 LDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLA  181 (323)
Q Consensus       103 ~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A  181 (323)
                      ..| |+||.|+..+..-++++|++ ++++++..|..|++|+|.+...|+...+..|+++|++   .+..+.+|.+||++|
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~-~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~---~~a~~~~~~~~l~~a  729 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQ-NGADVNALDSKGRTPLHHATASGHTSIACLLLKRGAD---PNAFDPDGKLPLDIA  729 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHh-cCCcchhhhccCCCcchhhhhhcccchhhhhcccccc---ccccCccCcchhhHH
Confidence            346 99999999999999999999 8999999999999999999999999999999999999   899999999999999


Q ss_pred             Hhhcch
Q 048253          182 VAVKLC  187 (323)
Q Consensus       182 ~~~~~~  187 (323)
                      ....+.
T Consensus       730 ~~~~~~  735 (785)
T KOG0521|consen  730 MEAANA  735 (785)
T ss_pred             hhhccc
Confidence            887665

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.17  E-value=4.9e-06  Score=72.39  Aligned_cols=74  Identities=26%  Similarity=0.215  Sum_probs=56.7

Q ss_pred             CHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhC
Q 048253           39 FPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKG  115 (323)
Q Consensus        39 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g  115 (323)
                      --|..||+.|+.+.|++|++.|.++ |..|....+||.+|+-.||.+++++|+++|+-. ....-+| .+ |+++...
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnV-N~vD~fD~spL~lAsLcGHe~vvklLLenGAiC-~rdtf~G~RC-~YgaLnd  112 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNV-NAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC-SRDTFDGDRC-HYGALND  112 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCc-chhhcccccHHHHHHHcCcHHHHHHHHHcCCcc-cccccCcchh-hhhhhhH
Confidence            3478888888888888888888776 888888888888888888888888888888865 4444556 54 4444443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.13  E-value=2e-06  Score=83.90  Aligned_cols=121  Identities=12%  Similarity=-0.018  Sum_probs=78.9

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhcc-CccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHH
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQ-DQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIAS   79 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~   79 (323)
                      |.+.||+++..+...+++.+++- +....+   .|.+|...+|+ |..++.+.+-+|+.....-++.+|..||||||+|+
T Consensus       574 ~~lllhL~a~~lyawLie~~~e~~~~~~~e---ld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa  649 (975)
T KOG0520|consen  574 DMLLLHLLAELLYAWLIEKVIEWAGSGDLE---LDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAA  649 (975)
T ss_pred             chHHHHHHHHHhHHHHHHHHhcccccCchh---hcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchHh
Confidence            45677888888888878777775 333222   24456666776 55566666666655544444777888888888888


Q ss_pred             hcCCHHHHHHHHhcCCcccc-----ccCCCC-cHHHHHHHhCCHHHHHHHHH
Q 048253           80 QKVHVDKIKALLQVNPAWCF-----AGDLDG-SPLHLAAMKGRIDVLEELFR  125 (323)
Q Consensus        80 ~~g~~~~v~~Ll~~~~~~~~-----~~~~~g-t~L~~A~~~g~~~~v~~Ll~  125 (323)
                      .+|+..++..|++.|++...     .....| |+-..|...|+..+.-+|-+
T Consensus       650 ~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  650 FRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             hcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence            88888888877766654422     223446 77777777777776666655

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.13  E-value=6.9e-06  Score=64.92  Aligned_cols=57  Identities=19%  Similarity=0.125  Sum_probs=50.5

Q ss_pred             CCcccccccccccHHHHHHhhCchhHHHHHHhCC-CCCCCCcccccCCCcHHHHHHhhcch
Q 048253          128 PLAASATMIWGETILHLCVKHNQLDALKFLLDNM-DDPQFLNAEDDYGMTITQLAVAVKLC  187 (323)
Q Consensus       128 ~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~~~~~~~~~d~~g~t~Lh~A~~~~~~  187 (323)
                      +.++|.+|..|+|+++.|+..|+.+.+.+|+.+| +.   +...|..|.+++.+|-+.|..
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~---vgv~d~ssldaaqlaek~g~~   59 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAF---VGVTDESSLDAAQLAEKGGAQ   59 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCccc---ccccccccchHHHHHHhcChH
Confidence            4568889999999999999999999999999998 55   888899999999999999988

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.11  E-value=7.1e-06  Score=71.42  Aligned_cols=73  Identities=18%  Similarity=0.104  Sum_probs=58.7

Q ss_pred             HHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhc
Q 048253            4 MLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQK   81 (323)
Q Consensus         4 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~   81 (323)
                      -|+.||+.|+++.|++|++.|.++|..   |....+||.+|+..||.++|++|+++|+.. ..-..+|.-. |+++-+
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN~v---D~fD~spL~lAsLcGHe~vvklLLenGAiC-~rdtf~G~RC-~YgaLn  111 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVNAV---DRFDSSPLYLASLCGHEDVVKLLLENGAIC-SRDTFDGDRC-HYGALN  111 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcchh---hcccccHHHHHHHcCcHHHHHHHHHcCCcc-cccccCcchh-hhhhhh
Confidence            489999999999999999999887554   788899999999999999999999999865 3333445443 444443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.05  E-value=4.9e-06  Score=81.21  Aligned_cols=121  Identities=17%  Similarity=0.088  Sum_probs=98.5

Q ss_pred             cccCCCCCcHHHHHHhcCCHHHHHHHHhc-CCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHH
Q 048253           65 GELDSNQFSALHIASQKVHVDKIKALLQV-NPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETIL  142 (323)
Q Consensus        65 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L  142 (323)
                      ......|+|-+|+++..++.-.++.+++. |... ...+.+| ..+|+ |..++.+..-+++...+..++.+|..|+|||
T Consensus       568 ~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~-~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL  645 (975)
T KOG0520|consen  568 SSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGD-LELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPL  645 (975)
T ss_pred             ccCCCcchHHHHHHHHHhHHHHHHHHhcccccCc-hhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCccc
Confidence            45567799999999999999999999986 4444 5566777 77887 5667788887787778899999999999999


Q ss_pred             HHHHhhCchhHHHHHHhCCCCCCC---CcccccCCCcHHHHHHhhcch
Q 048253          143 HLCVKHNQLDALKFLLDNMDDPQF---LNAEDDYGMTITQLAVAVKLC  187 (323)
Q Consensus       143 h~A~~~g~~~~v~~Ll~~g~~~~~---~~~~d~~g~t~Lh~A~~~~~~  187 (323)
                      |+|+.+|+..++..|.+.|+++..   .+.....|.|+-.+|-..|+.
T Consensus       646 ~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~  693 (975)
T KOG0520|consen  646 HWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHK  693 (975)
T ss_pred             chHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhccccc
Confidence            999999999999999988765432   334456789999999888887

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.03  E-value=1.1e-05  Score=63.76  Aligned_cols=64  Identities=14%  Similarity=0.148  Sum_probs=39.3

Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCc
Q 048253           33 VNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPA   96 (323)
Q Consensus        33 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~   96 (323)
                      .|..|+|||+.|+..|+.+.+.||+.+|...+...|..|.+++.+|-+.|..++++.|.+...+
T Consensus         8 rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    8 RDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             hhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            3556666666666666666666666666333366666666666666666666666666655433

>smart00248 ANK ankyrin repeats

Probab=96.99  E-value=0.0014  Score=34.74  Aligned_cols=26  Identities=23%  Similarity=0.313  Sum_probs=16.1

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCCC
Q 048253           37 SEFPLHAAALLGHVDFEGEIRRQKPE   62 (323)
Q Consensus        37 g~t~Lh~A~~~g~~~~v~~Ll~~~~~   62 (323)
                      |.||||+|+..++.++++.|++.+.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            55666666666666666666665543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.80  E-value=0.0021  Score=33.94  Aligned_cols=27  Identities=22%  Similarity=0.347  Sum_probs=19.6

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhcCCcc
Q 048253           71 QFSALHIASQKVHVDKIKALLQVNPAW   97 (323)
Q Consensus        71 g~tpL~~A~~~g~~~~v~~Ll~~~~~~   97 (323)
                      |.||+|+|+..++.++++.|++.+.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            567777777777777777777776644

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.78  E-value=0.0019  Score=58.63  Aligned_cols=66  Identities=15%  Similarity=0.127  Sum_probs=50.8

Q ss_pred             hhHHHHHHhCCCCC---CCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCc
Q 048253          151 LDALKFLLDNMDDP---QFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFM  227 (323)
Q Consensus       151 ~~~v~~Ll~~g~~~---~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t  227 (323)
                      ...+++|.+++.+.   ..+...+.--.|+||+|+..|..                 ++|.+||+.| +|+.++|..|+|
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~-----------------k~v~~~Leeg-~Dp~~kd~~Grt  465 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGAR-----------------KCVKYFLEEG-CDPSTKDGAGRT  465 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchH-----------------HHHHHHHHhc-CCchhcccCCCC
Confidence            56777887776542   11222344466899999999999                 9999999998 999999999999


Q ss_pred             hhhhhhh
Q 048253          228 ALDTLAQ  234 (323)
Q Consensus       228 pl~~A~~  234 (323)
                      |.+++..
T Consensus       466 py~ls~n  472 (591)
T KOG2505|consen  466 PYSLSAN  472 (591)
T ss_pred             ccccccc
Confidence            9988764

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.56  E-value=0.038  Score=44.05  Aligned_cols=134  Identities=19%  Similarity=0.106  Sum_probs=63.3

Q ss_pred             HHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCH
Q 048253            5 LYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHV   84 (323)
Q Consensus         5 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~   84 (323)
                      |.-|+..+-+.++++.-+.-...      -...++.+-.||+..+.|+|+|+-+.-.      -.+-.+-+-.|......
T Consensus        50 l~HAVk~nmL~ILqkyke~L~~~------~~~~q~LFElAC~~qkydiV~WI~qnL~------i~~~~~iFdIA~~~kDl  117 (192)
T PF03158_consen   50 LYHAVKYNMLSILQKYKEDLENE------RYLNQELFELACEEQKYDIVKWIGQNLH------IYNPEDIFDIAFAKKDL  117 (192)
T ss_pred             HHHHHHcCcHHHHHHHHHHhhcc------hhHHHHHHHHHHHHccccHHHHHhhccC------CCCchhhhhhhhhccch
Confidence            44566666666666554432210      0124556666666666666666632211      11122334555555555


Q ss_pred             HHH----HHHHhcCCccccccCCCC---cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHH
Q 048253           85 DKI----KALLQVNPAWCFAGDLDG---SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFL  157 (323)
Q Consensus        85 ~~v----~~Ll~~~~~~~~~~~~~g---t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~L  157 (323)
                      ++.    ++++++...- ...|..-   .-|..|+..|-...+...++ .+.+++.      ++|..|+..++..++.++
T Consensus       118 sLyslGY~l~~~~~~~~-~~~d~~~ll~~hl~~a~~kgll~F~letlk-ygg~~~~------~vls~Av~ynhRkIL~yf  189 (192)
T PF03158_consen  118 SLYSLGYKLLFNRMMSE-HNEDPTSLLTQHLEKAAAKGLLPFVLETLK-YGGNVDI------IVLSQAVKYNHRKILDYF  189 (192)
T ss_pred             hHHHHHHHHHHhhcccc-cccCHHHHHHHHHHHHHHCCCHHHHHHHHH-cCCcccH------HHHHHHHHhhHHHHHHHh
Confidence            442    1122221111 0011111   22455666666666666666 4433332      466666666666666665


Q ss_pred             H
Q 048253          158 L  158 (323)
Q Consensus       158 l  158 (323)
                      +
T Consensus       190 i  190 (192)
T PF03158_consen  190 I  190 (192)
T ss_pred             h
Confidence            5

These proteins may be involved in promoting survival of infected macrophages [].

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.39  E-value=0.0044  Score=56.38  Aligned_cols=41  Identities=24%  Similarity=0.195  Sum_probs=21.3

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHH
Q 048253           71 QFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAA  112 (323)
Q Consensus        71 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~  112 (323)
                      --|+||+|+..|..++|.+||+.|+++ ..+|..| ||..++.
T Consensus       430 tsT~LH~aa~qg~~k~v~~~Leeg~Dp-~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  430 TSTFLHYAAAQGARKCVKYFLEEGCDP-STKDGAGRTPYSLSA  471 (591)
T ss_pred             cchHHHHHHhcchHHHHHHHHHhcCCc-hhcccCCCCcccccc
Confidence            345555555555555555555555554 4455555 5555443

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.19  E-value=0.068  Score=42.65  Aligned_cols=138  Identities=12%  Similarity=0.050  Sum_probs=95.4

Q ss_pred             CCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCC
Q 048253           38 EFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGR  116 (323)
Q Consensus        38 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~  116 (323)
                      ...|.-|+.++...+++..-+....-    -...++-+-.||+..+.|+|+++-+.   .   .-.+- +.+-.|....+
T Consensus        47 ~CLl~HAVk~nmL~ILqkyke~L~~~----~~~~q~LFElAC~~qkydiV~WI~qn---L---~i~~~~~iFdIA~~~kD  116 (192)
T PF03158_consen   47 WCLLYHAVKYNMLSILQKYKEDLENE----RYLNQELFELACEEQKYDIVKWIGQN---L---HIYNPEDIFDIAFAKKD  116 (192)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHhhcc----hhHHHHHHHHHHHHccccHHHHHhhc---c---CCCCchhhhhhhhhccc
Confidence            45678899999999999887754321    23567788999999999999999432   2   11222 56778888888


Q ss_pred             HHHHH----HHHHhCCCcccccc--cccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhh
Q 048253          117 IDVLE----ELFRTRPLAASATM--IWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQN  190 (323)
Q Consensus       117 ~~~v~----~Ll~~~~~~~~~~~--~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~  190 (323)
                      .++..    +++. ........|  .--..-|..|+..|-...+.-.+++|.+   ++      .++|..|+..++.   
T Consensus       117 lsLyslGY~l~~~-~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~---~~------~~vls~Av~ynhR---  183 (192)
T PF03158_consen  117 LSLYSLGYKLLFN-RMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGN---VD------IIVLSQAVKYNHR---  183 (192)
T ss_pred             hhHHHHHHHHHHh-hcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCc---cc------HHHHHHHHHhhHH---
Confidence            77643    2333 211110111  0112347889999999999999999866   33      2899999999999   


Q ss_pred             HHHHHHHHhhcchHHHHHHHhh
Q 048253          191 LVELVEEYCHSKWGYVIRFLTT  212 (323)
Q Consensus       191 ~~~~l~~~~~~~~~~~v~~Ll~  212 (323)
                                    +++.++++
T Consensus       184 --------------kIL~yfi~  191 (192)
T PF03158_consen  184 --------------KILDYFIR  191 (192)
T ss_pred             --------------HHHHHhhc
Confidence                          99888875

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.98  E-value=0.2  Score=41.34  Aligned_cols=47  Identities=21%  Similarity=0.273  Sum_probs=31.6

Q ss_pred             CHHHHHHHHHhCCCcccc---cccccccHHHHHHhhCchhHHHHHHhCCC
Q 048253          116 RIDVLEELFRTRPLAASA---TMIWGETILHLCVKHNQLDALKFLLDNMD  162 (323)
Q Consensus       116 ~~~~v~~Ll~~~~~~~~~---~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~  162 (323)
                      +..+++++++.+-.++|.   +-..|.|-|.-|+..++.+++.+|+++|+
T Consensus       229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            456666666644444443   34467777777888778888888887776

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.86  E-value=0.19  Score=41.48  Aligned_cols=48  Identities=15%  Similarity=0.184  Sum_probs=23.9

Q ss_pred             hhHHHHHHhCCC-CCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhh
Q 048253          151 LDALKFLLDNMD-DPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCH  200 (323)
Q Consensus       151 ~~~v~~Ll~~g~-~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~  200 (323)
                      ..++++++++|- +..-.-.+-+.|.|-|.-|++.++.  +++.+|+++++
T Consensus       230 ~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~--emi~~Llk~GA  278 (284)
T PF06128_consen  230 YKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNS--EMIAFLLKYGA  278 (284)
T ss_pred             HHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcH--HHHHHHHHcCc
Confidence            445555555552 2000112334566666666666655  56666665554

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=93.23  E-value=0.14  Score=35.06  Aligned_cols=46  Identities=13%  Similarity=-0.018  Sum_probs=26.3

Q ss_pred             HHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHh
Q 048253            4 MLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQ   59 (323)
Q Consensus         4 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~   59 (323)
                      .|..|+..|+.|+++.+++.+..          ....+..|+..-+.+++++|+++
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~~~----------~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKNKP----------DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHhcc----------HHHHHHHHHHHhhHHHHHHHHHh
Confidence            45566666666666666643311          12446666666666666666665

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=92.11  E-value=0.34  Score=33.09  Aligned_cols=47  Identities=13%  Similarity=0.045  Sum_probs=25.6

Q ss_pred             CHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhc
Q 048253           39 FPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQV   93 (323)
Q Consensus        39 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~   93 (323)
                      ..+..|+..|+.|+++.+++.+...        ...+..|+...+-+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~~~--------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNKPD--------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhccH--------HHHHHHHHHHhhHHHHHHHHHh
Confidence            3456666666666666665443111        2345666666666666666554

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	323
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		7e-09
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		7e-08
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-07
2xee_A	157	Structural Determinants For Improved Thermal Stabil		2e-07
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		3e-07
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		7e-07
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		8e-07
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-06
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		2e-06
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-06
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		5e-06
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-06
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-05
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		4e-05
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		4e-05
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		8e-04
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		4e-05
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		7e-05
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		8e-05
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		8e-05
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-04
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		2e-04
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		2e-04
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		2e-04
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		3e-04
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		6e-04
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		7e-04
1uoh_A	226	Human Gankyrin Length = 226		8e-04
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		9e-04
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		9e-04

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 7/150 (4%)
Query: 34  NCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQV 93
           N   E PLH AA  GH +    + + K ++  +   +Q + LH A++  H + +K LL+ 
Sbjct: 44  NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ-TPLHCAARIGHTNMVKLLLEN 102
Query: 94  NPAWCFAGDLDGSPLHLAAMKGRIDVLEELFRTRPLAASATMI-WGETILHLCVKHNQLD 152
           N     A     +PLH+AA +G ++ +  L      A+ A M   G T LH+  K+ ++ 
Sbjct: 103 NANPNLATTAGHTPLHIAAREGHVETVLALLEKE--ASQACMTKKGFTPLHVAAKYGKVR 160
Query: 153 ALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
             + LL+    P   NA    G+T   +AV
Sbjct: 161 VAELLLERDAHP---NAAGKNGLTPLHVAV 187

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 67/116 (57%), Gaps = 6/116 (5%)
Query: 68  DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRT 126
           D++ ++ LH+A+   H++ ++ LL+ N A   A DL G +PLHLAA  G ++++E L + 
Sbjct: 44  DNDGYTPLHLAASNGHLEIVEVLLK-NGADVNASDLTGITPLHLAAATGHLEIVEVLLK- 101
Query: 127 RPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
                +A    G T LHL  K+  L+ ++ LL +  D   +NA+D +G T   +++
Sbjct: 102 HGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 66/116 (56%), Gaps = 6/116 (5%)
Query: 68  DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRT 126
           D + ++ LH+A+++ H++ ++ LL+   A   A D DG +PLHLAA +G ++++E L + 
Sbjct: 32  DKDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 127 RPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
                +A    G T LHL  +   L+ ++ LL    D   +NA+D +G T   LA+
Sbjct: 91  GA-DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD---VNAQDKFGKTPFDLAI 142

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 66/116 (56%), Gaps = 6/116 (5%)
Query: 68  DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRT 126
           D + ++ LH+A+++ H++ ++ LL+   A   A D DG +PLHLAA +G ++++E L + 
Sbjct: 32  DKDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 127 RPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
                +A    G T LHL  +   L+ ++ LL    D   +NA+D +G T   LA+
Sbjct: 91  GA-DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD---VNAQDKFGKTPFDLAI 142

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 67/116 (57%), Gaps = 6/116 (5%)
Query: 68  DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGS-PLHLAAMKGRIDVLEELFRT 126
           D++  + LH+A+   H++ ++ LL+ + A   A D+ GS PLHLAA+ G ++++E L + 
Sbjct: 44  DASGLTPLHLAATYGHLEIVEVLLK-HGADVNAIDIXGSTPLHLAALIGHLEIVEVLLK- 101
Query: 127 RPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
                +A   WG+T LHL      L+ ++ LL +  D   +NA+D +G T   +++
Sbjct: 102 HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 66/116 (56%), Gaps = 6/116 (5%)
Query: 68  DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRT 126
           D + ++ LH+A+++ H++ ++ LL+   A   A D DG +PLHLAA +G ++++E L + 
Sbjct: 44  DKDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 102
Query: 127 RPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
                +A    G T LHL  +   L+ ++ LL    D   +NA+D +G T   +++
Sbjct: 103 GA-DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD---VNAQDKFGKTAFDISI 154

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 67/116 (57%), Gaps = 6/116 (5%)
Query: 68  DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGS-PLHLAAMKGRIDVLEELFRT 126
           D++  + LH+A+   H++ ++ LL+ + A   A D+ GS PLHLAA+ G ++++E L + 
Sbjct: 44  DASGLTPLHLAATYGHLEIVEVLLK-HGADVNAIDIMGSTPLHLAALIGHLEIVEVLLK- 101
Query: 127 RPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
                +A   WG+T LHL      L+ ++ LL +  D   +NA+D +G T   +++
Sbjct: 102 HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 61/113 (53%), Gaps = 6/113 (5%)
Query: 70  NQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRP 128
           N  + LH+A++  H++ +K LL+   A   A D +G +PLHLAA  G ++V++ L     
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 129 LAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLA 181
              +A    G T LHL  ++  L+ +K LL+   D   +NA+D  G T   LA
Sbjct: 60  -DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLA 108

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 62/115 (53%), Gaps = 4/115 (3%)
Query: 68  DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRIDVLEELFRTR 127
           D +  + LH+A+ K H++ ++ LL+       A  +  +PLHLAA+ G ++++E L +  
Sbjct: 44  DDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNG 103
Query: 128 PLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
               +AT  +G T LHL      L+ ++ LL    D   +NA+D +G T   +++
Sbjct: 104 A-DVNATDTYGFTPLHLAADAGHLEIVEVLLKYGAD---VNAQDKFGKTAFDISI 154

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 65/116 (56%), Gaps = 6/116 (5%)
Query: 68  DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRT 126
           D   ++ LH+A+   H++ ++ LL+ N A   A D  G +PLHLAA +G ++++E L + 
Sbjct: 44  DFTGWTPLHLAAHFGHLEIVEVLLK-NGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKN 102
Query: 127 RPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
                +A+   G T LHL  K   L+ ++ LL N  D   +NA+D +G T   +++
Sbjct: 103 GA-DVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGAD---VNAQDKFGKTAFDISI 154

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 65/117 (55%), Gaps = 6/117 (5%)
Query: 67  LDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFR 125
           +D+   + LH+A+   H++ ++ LL+ + A   A D+ G +PLHLAAM G ++++E L +
Sbjct: 43  VDNTGLTPLHLAAVSGHLEIVEVLLK-HGADVDAADVYGFTPLHLAAMTGHLEIVEVLLK 101
Query: 126 TRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
                 +A  + G T LHL      L+ ++ LL    D   +NA+D +G T   +++
Sbjct: 102 YGA-DVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGAD---VNAQDKFGKTAFDISI 154

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 59/115 (51%), Gaps = 6/115 (5%)
Query: 68  DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRT 126
           DS+  + LH+A++  H + +K LL    A   A D DG +PLHLAA  G  +V++ L  +
Sbjct: 34  DSDGKTPLHLAAENGHKEVVKLLLSQG-ADPNAKDSDGKTPLHLAAENGHKEVVK-LLLS 91
Query: 127 RPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLA 181
           +    +A    G+T LHL  ++   + +K LL    DP   N  D  G T   LA
Sbjct: 92  QGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADP---NTSDSDGRTPLDLA 143

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 63/116 (54%), Gaps = 6/116 (5%)
Query: 68  DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGS-PLHLAAMKGRIDVLEELFRT 126
           D+   + LH+A++  H++ ++ LL+ N A   A D  GS PLHLAA +G ++++E L + 
Sbjct: 44  DTYGDTPLHLAARVGHLEIVEVLLK-NGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKY 102
Query: 127 RPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
                +A    G T LHL      L+ ++ LL    D   +NA+D +G T   +++
Sbjct: 103 GA-DVNADDTIGSTPLHLAADTGHLEIVEVLLKYGAD---VNAQDKFGKTAFDISI 154

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 6/99 (6%)
Query: 85  DKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILH 143
           D+++ +L  N A   A D  G +PLHLAA +G ++++E L +      +A+ IWG T LH
Sbjct: 28  DEVR-ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK-HGADVNASDIWGRTPLH 85
Query: 144 LCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
           L      L+ ++ LL+   D   +NA+D +G T   +++
Sbjct: 86  LAATVGHLEIVEVLLEYGAD---VNAQDKFGKTAFDISI 121

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 4/119 (3%)
Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCF 99
           PLH AA  GH++    + +   ++  + DS   + LH+A+ + H++ ++ LL+ N A   
Sbjct: 50  PLHLAAYFGHLEIVEVLLKNGADVNAD-DSLGVTPLHLAADRGHLEVVEVLLK-NGADVN 107
Query: 100 AGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFL 157
           A D +G +PLHLAA  G ++++E L +      +A   +G+T   + + +   D  + L
Sbjct: 108 ANDHNGFTPLHLAANIGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 6/109 (5%)
Query: 75  LHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASA 133
           LH+A+   H++ ++ LL+ N A   A D  G +PLHLAA +G ++V+E L +      +A
Sbjct: 51  LHLAAYFGHLEIVEVLLK-NGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGA-DVNA 108
Query: 134 TMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
               G T LHL      L+ ++ LL +  D   +NA+D +G T   +++
Sbjct: 109 NDHNGFTPLHLAANIGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 65/116 (56%), Gaps = 6/116 (5%)
Query: 68  DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRT 126
           D++ ++ LH+A+   H++ ++ LL+ N A   A D  G +PL LAA+ G ++++E L + 
Sbjct: 44  DASGWTPLHLAAFNGHLEIVEVLLK-NGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKN 102
Query: 127 RPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
                +A  + G T LHL      L+ ++ LL N  D   +NA+D +G T   +++
Sbjct: 103 GA-DVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD---VNAQDKFGKTAFDISI 154

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 69/148 (46%), Gaps = 26/148 (17%)
Query: 85  DKIKALLQVNPAWCFAGDLDGS-PLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILH 143
           D+++ +L  N A   A D  G+ PLHLAA  G ++++E L +       A+ ++G T LH
Sbjct: 28  DEVR-ILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLK-HGADVDASDVFGYTPLH 85
Query: 144 LCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKW 203
           L      L+ ++ LL N  D   +NA D  GMT   LA                   +KW
Sbjct: 86  LAAYWGHLEIVEVLLKNGAD---VNAMDSDGMTPLHLA-------------------AKW 123
Query: 204 GYV-IRFLTTRTMIEVNALNANGFMALD 230
           GY+ I  +  +   +VNA +  G  A D
Sbjct: 124 GYLEIVEVLLKHGADVNAQDKFGKTAFD 151

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 6/99 (6%)
Query: 85  DKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILH 143
           D+++ +L  N A   A D  G +PLHLAA +G ++++E L +      +A  IWG T LH
Sbjct: 28  DEVR-ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK-HGADVNARDIWGRTPLH 85
Query: 144 LCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
           L      L+ ++ LL+   D   +NA+D +G T   +++
Sbjct: 86  LAATVGHLEIVEVLLEYGAD---VNAQDKFGKTAFDISI 121

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 8/115 (6%)
Query: 85  DKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILH 143
           D+++ +L  N A   A D+ G +PLHLAA  G ++++E L +      +A    G T LH
Sbjct: 28  DEVR-ILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGA-DVNAYDTLGSTPLH 85
Query: 144 LCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEY 198
           L      L+ ++ LL N  D   +NA+DD G  IT L +A       +VE++ +Y
Sbjct: 86  LAAHFGHLEIVEVLLKNGAD---VNAKDDNG--ITPLHLAANRGHLEIVEVLLKY 135

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 8/131 (6%)
Query: 68  DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRT 126
           DS+  + LH A++  H + +K LL    A   A D DG +PLH AA  G  ++++ L  +
Sbjct: 34  DSDGRTPLHYAAENGHKEIVKLLLSKG-ADPNAKDSDGRTPLHYAAENGHKEIVK-LLLS 91
Query: 127 RPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKL 186
           +    +A    G T LH   ++   + +K LL    DP   N  D  G   T L +A + 
Sbjct: 92  KGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADP---NTSDSDGR--TPLDLAREH 146
Query: 187 CFQNLVELVEE 197
             + +V+L+E+
Sbjct: 147 GNEEIVKLLEK 157

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 64/149 (42%), Gaps = 4/149 (2%)
Query: 35  CLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVN 94
           C+S   +   A  G +D   E       LA   D +  +ALH A    H + ++ LLQ+ 
Sbjct: 4   CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG 63
Query: 95  PAWCFAGDLDGSPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDAL 154
                  D   SPLH+AA  GR ++++ L   +    +A    G T LH     N+ +  
Sbjct: 64  VPVNDKDDAGWSPLHIAASAGRDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIA 122
Query: 155 KFLLDNMDDPQFLNAEDDYGMTITQLAVA 183
             LL+   +P   +A+D Y  T    A A
Sbjct: 123 VMLLEGGANP---DAKDHYDATAMHRAAA 148

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 72  FSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLA 130
            + LH+     H++ I+ LL+   A   A D  G +PLHLAA +G ++++E L +     
Sbjct: 48  ITPLHLVVNNGHLEIIEVLLKY-AADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGA-D 105
Query: 131 ASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
            +A    G T LHL  +   L+ ++ LL    D   +NA+D +G T   +++
Sbjct: 106 VNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGAD---VNAQDKFGKTAFDISI 154

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 6/99 (6%)
Query: 85  DKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILH 143
           D+++ +L  N A   A D  G +PLHLAA +G ++++E L +      +A+  WG T LH
Sbjct: 28  DEVR-ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK-HGADVNASDSWGRTPLH 85
Query: 144 LCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
           L      L+ ++ LL+   D   +NA+D +G T   +++
Sbjct: 86  LAATVGHLEIVEVLLEYGAD---VNAQDKFGKTAFDISI 121

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 70  NQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRP 128
           N  + LH+A++  H++ +K LL+   A   A D +G +PLHLAA  G ++V++ L     
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 129 LAASATMIWGETILHLCVKHNQLDALKFLLD 159
              +A    G T LHL  ++  L+ +K LL+
Sbjct: 60  -DVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 9/137 (6%)
Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGELDS---NQFSALHIASQKVHVDKIKALLQVNPA 96
           PLHAAA  GHVD    I     +    +D+   +Q + L  A++  H++ +K L++   A
Sbjct: 14  PLHAAAEAGHVD----ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAG-A 68
Query: 97  WCFAGDLDGSP-LHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALK 155
                D +GS  LHLAA KG  +V++ L     +  +     G T +    ++  +D +K
Sbjct: 69  LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVK 128
Query: 156 FLLDNMDDPQFLNAEDD 172
            LL    D    + E++
Sbjct: 129 LLLSKGSDINIRDNEEN 145

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 4/121 (3%)
Query: 63  LAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRIDVLEE 122
           LA   D +  +ALH A    H + ++ LLQ+        D   SPLH+AA  GR ++++ 
Sbjct: 33  LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKA 92
Query: 123 LFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
           L   +    +A    G T LH     N+ +    LL+   +P   +A+D Y  T    A 
Sbjct: 93  LL-GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP---DAKDHYEATAMHRAA 148
Query: 183 A 183
           A
Sbjct: 149 A 149

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 4/121 (3%)
Query: 63  LAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRIDVLEE 122
           LA   D +  +ALH A    H + ++ LLQ+        D   SPLH+AA  GR ++++ 
Sbjct: 32  LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKA 91
Query: 123 LFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
           L   +    +A    G T LH     N+ +    LL+   +P   +A+D Y  T    A 
Sbjct: 92  LL-GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP---DAKDHYEATAMHRAA 147
Query: 183 A 183
           A
Sbjct: 148 A 148

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCF 99
           PLH AA +GH++    + R   ++   +D+N  + LH+A+   H++ ++ LL+   A   
Sbjct: 38  PLHMAAAVGHLEIVEVLLRNGADV-NAVDTNGTTPLHLAASLGHLEIVEVLLKYG-ADVN 95
Query: 100 AGDLDG-SPLHLAAMKGRIDVLEELFR 125
           A D  G +PL+LAA  G ++++E L +
Sbjct: 96  AKDATGITPLYLAAYWGHLEIVEVLLK 122

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 63/114 (55%), Gaps = 8/114 (7%)
Query: 85  DKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILH 143
           D+++ +L  N A   A D  G +PLHLAAM G ++++E L +      +AT   G T LH
Sbjct: 28  DEVR-ILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGA-DVNATGNTGRTPLH 85
Query: 144 LCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEE 197
           L    + L+ ++ LL +  D   +NA+D +G   T   +++    ++L E++++
Sbjct: 86  LAAWADHLEIVEVLLKHGAD---VNAQDKFGK--TAFDISIDNGNEDLAEILQK 134

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	323
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-16
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-11
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-16
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-13
3v30_A	172	DNA-binding protein rfxank; structural genomics co	9e-06
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-14
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-10
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-08
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-04
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-14
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	8e-13
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-11
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-09
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-07
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-12
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-13
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-04
2etb_A	256	Transient receptor potential cation channel subfam	3e-13
2etb_A	256	Transient receptor potential cation channel subfam	1e-06
2etb_A	256	Transient receptor potential cation channel subfam	7e-06
2rfa_A	232	Transient receptor potential cation channel subfa	5e-13
2rfa_A	232	Transient receptor potential cation channel subfa	2e-08
2rfa_A	232	Transient receptor potential cation channel subfa	5e-08
2pnn_A	273	Transient receptor potential cation channel subfa	5e-13
2pnn_A	273	Transient receptor potential cation channel subfa	6e-07
2pnn_A	273	Transient receptor potential cation channel subfa	3e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-13
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-08
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-12
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-12
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-11
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-05
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-12
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-10
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-12
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-10
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-09
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-12
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-11
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-08
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-12
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-11
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-04
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-11
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-11
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-08
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-11
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-10
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-11
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-09
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-04
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-11
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-10
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	8e-10
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-08
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-11
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-07
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-11
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-10
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-09
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-11
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-08
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-11
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-10
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-11
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-10
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-08
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-10
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-09
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-09
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-08
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-10
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-08
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-07
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-10
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-10
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-07
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-10
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-10
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-09
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-08
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-10
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	9e-09
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-10
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-08
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-10
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-08
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-07
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-10
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-10
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-06
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	9e-10
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-08
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-07
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-08
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-05
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-09
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-09
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-08
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	8e-09
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-07
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-08
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-07
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-08
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-06
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-08
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	9e-07
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-05
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-06
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-04
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	9e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	9e-04

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 75.0 bits (185), Expect = 4e-16
 Identities = 31/178 (17%), Positives = 59/178 (33%), Gaps = 24/178 (13%)

Query: 5   LYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVD-FEGEIRRQKPEL 63
           ++ A       T  EL  ++  II    +  +S+         G           ++   
Sbjct: 16  VFRALYTFEPRTPDELYIEEGDII---YITDMSDTNWWKGTSKGRTGLIPSNYVAEQ--- 69

Query: 64  AGELDSNQFSALHIASQKVHVDKIKALLQ----VNPAWCFAGDLDGS-PLHLAAMKGRID 118
                 +  + LH A+++ ++  ++  L     VN       D  GS  L+ A   G  D
Sbjct: 70  ----AESIDNPLHEAAKRGNLSWLRECLDNRVGVN-----GLDKAGSTALYWACHGGHKD 120

Query: 119 VLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMT 176
           ++E LF    +  +     G+T LH        D ++ LL         +  +     
Sbjct: 121 IVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGART---DLRNIEKKL 175

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 62.3 bits (152), Expect = 1e-11
 Identities = 22/143 (15%), Positives = 43/143 (30%), Gaps = 21/143 (14%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCF 99
            +  A          E+  ++ ++   +     +     + K     I +       +  
Sbjct: 15  KVFRALYTFEPRTPDELYIEEGDII-YITDMSDTNWWKGTSKGRTGLIPS------NYVA 67

Query: 100 AGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASA----TMIWGETILHLCVKHNQLDAL 154
                  +PLH AA +G +  L E      L            G T L+        D +
Sbjct: 68  EQAESIDNPLHEAAKRGNLSWLREC-----LDNRVGVNGLDKAGSTALYWACHGGHKDIV 122

Query: 155 KFLLDNMD-DPQFLNAEDDYGMT 176
           + L    + +   LN ++  G T
Sbjct: 123 EMLFTQPNIE---LNQQNKLGDT 142

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 73.6 bits (182), Expect = 5e-16
 Identities = 39/194 (20%), Positives = 63/194 (32%), Gaps = 51/194 (26%)

Query: 5   LYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEF---PLHAAALLGHVDFEGEIRRQKP 61
           +++ A +G    L E L++     G   VN   E    PL  A+  G +           
Sbjct: 6   IHQLAAQGELDQLKEHLRK-----GDNLVNKPDERGFTPLIWASAFGEI----------- 49

Query: 62  ELAGEL----------DSNQFSALHIASQKVHVDKIKALLQ----VNPAWCFAGDLDGS- 106
           E    L             + SAL +AS   + D +  LL+    +N       D +G  
Sbjct: 50  ETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDIN-----IYDWNGGT 104

Query: 107 PLHLAAMKGRIDVLEELFRTRPLAASA----TMIWGETILHLCVKHNQLDALKFLLDNMD 162
           PL  A     +  +E L     LA  A        G T + L V        + + +++ 
Sbjct: 105 PLLYAVRGNHVKCVEAL-----LARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159

Query: 163 DPQFLNAEDDYGMT 176
               L   +     
Sbjct: 160 K---LFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 65.9 bits (162), Expect = 3e-13
 Identities = 33/146 (22%), Positives = 52/146 (35%), Gaps = 22/146 (15%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQ----VNP 95
            +H  A  G +D   E  R+   L  + D   F+ L  AS    ++ ++ LL+     + 
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH- 63

Query: 96  AWCFAGDLDGS-PLHLAAMKGRIDVLEELFRTRPLAASA----TMIWGETILHLCVKHNQ 150
                   +    L LA+  G  D++  L     L            G T L   V+ N 
Sbjct: 64  ----ILAKERESALSLASTGGYTDIVGLL-----LERDVDINIYDWNGGTPLLYAVRGNH 114

Query: 151 LDALKFLLDNMDDPQFLNAEDDYGMT 176
           +  ++ LL    D      E D G T
Sbjct: 115 VKCVEALLARGADL---TTEADSGYT 137

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 44.3 bits (106), Expect = 9e-06
 Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 13/78 (16%)

Query: 104 DGSPLHLAAMKGRIDVLEELFRTRPLAASATMI-----WGETILHLCVKHNQLDALKFLL 158
           D   +H  A +G +D L+E      L     ++      G T L       +++ ++FLL
Sbjct: 2   DSLSIHQLAAQGELDQLKEH-----LRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLL 56

Query: 159 DNMDDPQFLNAEDDYGMT 176
           +   DP   +       +
Sbjct: 57  EWGADP---HILAKERES 71

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 71.3 bits (176), Expect = 1e-14
 Identities = 40/155 (25%), Positives = 58/155 (37%), Gaps = 26/155 (16%)

Query: 40  PLHAAALLGHVDFEGEIRRQK--PELAGEL-----------DSNQFSALHIASQKVHVDK 86
           PL  A+  G     G    ++  P +  +            D    +ALH+A++    D 
Sbjct: 13  PLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDA 72

Query: 87  IKALLQ----VNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETI 141
            K LL+     N       D  G +PLH A       V + L R R     A M  G T 
Sbjct: 73  AKRLLEASADAN-----IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTP 127

Query: 142 LHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMT 176
           L L  +      L+ L+++  D    NA DD G +
Sbjct: 128 LILAARLAVEGMLEDLINSHADV---NAVDDLGKS 159

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 60.2 bits (147), Expect = 1e-10
 Identities = 33/154 (21%), Positives = 54/154 (35%), Gaps = 38/154 (24%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPEL---AG----ELDSNQFSALHIASQKVHVDKIKALLQ 92
            LH AA     D          +    A       D+   + LH A         + L++
Sbjct: 60  ALHLAARYSRSDA--------AKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIR 111

Query: 93  -----VNPAWCFAGDLDGS-PLHLAAMKGRIDVLEELFRTRPLAASA----TMIWGETIL 142
                ++     A   DG+ PL LAA      +LE+L     + + A        G++ L
Sbjct: 112 NRATDLD-----ARMHDGTTPLILAARLAVEGMLEDL-----INSHADVNAVDDLGKSAL 161

Query: 143 HLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMT 176
           H     N +DA   LL N  +    + +++   T
Sbjct: 162 HWAAAVNNVDAAVVLLKNGANK---DMQNNREET 192

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 52.9 bits (128), Expect = 3e-08
 Identities = 28/140 (20%), Positives = 43/140 (30%), Gaps = 40/140 (28%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGEL----------DSNQFSALHIASQKVHVDKIKA 89
           PL  AA L               +  +L          D    SALH A+   +VD    
Sbjct: 127 PLILAARLAVE-----------GMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV 175

Query: 90  LLQ----VNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASA----TMIWGET 140
           LL+     +       +    +PL LAA +G  +  + L     L   A    T      
Sbjct: 176 LLKNGANKD-----MQNNREETPLFLAAREGSYETAKVL-----LDHFANRDITDHMDRL 225

Query: 141 ILHLCVKHNQLDALKFLLDN 160
              +  +    D ++ L   
Sbjct: 226 PRDIAQERMHHDIVRLLDLE 245

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 41.3 bits (98), Expect = 2e-04
 Identities = 24/114 (21%), Positives = 38/114 (33%), Gaps = 33/114 (28%)

Query: 68  DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRIDVLEELFRTR 127
             + F+ L IAS                             +    +    V+ +     
Sbjct: 7   GPDGFTPLMIASCSGGGL--------------------ETGNSEEEEDAPAVISDF---- 42

Query: 128 PLAASA-----TMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMT 176
            +   A     T   GET LHL  ++++ DA K LL+   D    N +D+ G T
Sbjct: 43  -IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA---NIQDNMGRT 92

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 69.9 bits (172), Expect = 3e-14
 Identities = 43/216 (19%), Positives = 76/216 (35%), Gaps = 50/216 (23%)

Query: 5   LYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEF---PLHAAALLGHVDFEGEIRRQKP 61
           L+ A +   +   +E+++Q  +      +N  +     PLH A +              P
Sbjct: 12  LHLAIIHEEKALTMEVIRQ--VKGDLAFLNFQNNLQQTPLHLAVITNQ-----------P 58

Query: 62  ELA----------GELDSNQFSALHIASQKVHVDKIKALLQ--VNPAWCF---AGDLDG- 105
           E+A             D    + LH+A ++  +  +  L Q    P       A + +G 
Sbjct: 59  EIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGH 118

Query: 106 SPLHLAAMKGRIDVLEELFRTRPLAASA-----TMIWGETILHLCVKHNQLDALKFLLDN 160
           + LHLA++ G + ++E L     ++  A         G T LHL V     D +  LL  
Sbjct: 119 TCLHLASIHGYLGIVELL-----VSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC 173

Query: 161 MDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVE 196
             D    N     G +  QL        +    + +
Sbjct: 174 GADV---NRVTYQGYSPYQLT-----WGRPSTRIQQ 201

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 66.0 bits (162), Expect = 8e-13
 Identities = 41/169 (24%), Positives = 66/169 (39%), Gaps = 24/169 (14%)

Query: 40  PLHAAALLGHVDFEGEIRR---QKPELAGELDSNQFSALHIASQKVHVDKIKALLQ---- 92
            LH A +        E+ R            ++ Q + LH+A      +  +ALL     
Sbjct: 11  FLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD 70

Query: 93  VNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMI-----WGETILHLCV 146
                    D  G +PLHLA  +G +  +  L ++       +++      G T LHL  
Sbjct: 71  PE-----LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS 125

Query: 147 KHNQLDALKFLLDNMDDPQFLNAEDD-YGMTITQLAVAVKLCFQNLVEL 194
            H  L  ++ L+    D   +NA++   G T   L +AV L   +LV L
Sbjct: 126 IHGYLGIVELLVSLGAD---VNAQEPCNGRTA--LHLAVDLQNPDLVSL 169

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 61.4 bits (150), Expect = 3e-11
 Identities = 26/122 (21%), Positives = 44/122 (36%), Gaps = 16/122 (13%)

Query: 66  ELDSNQFSALHIASQKVHVDKIKALLQV---NPAWCFAGDLDG-SPLHLAAMKGRIDVLE 121
           +L  +  S LH+A           +++    + A+    +    +PLHLA +  + ++ E
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62

Query: 122 ELFRTRPLAASA----TMIWGETILHLCVKHNQLDALKFLLD---NMDDPQFLNAEDDYG 174
            L     L A          G T LHL  +   L ++  L            L A +  G
Sbjct: 63  AL-----LGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNG 117

Query: 175 MT 176
            T
Sbjct: 118 HT 119

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 56.8 bits (138), Expect = 1e-09
 Identities = 28/159 (17%), Positives = 51/159 (32%), Gaps = 35/159 (22%)

Query: 40  PLHAAALLGHVD-----FEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQ-- 92
           PLH A   G +       +         +    + N  + LH+AS   ++  ++ L+   
Sbjct: 81  PLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLG 140

Query: 93  --VNPAWCFAGD-LDG-SPLHLAAMKGRIDVLEELFRTRPLAASA----TMIWGETILHL 144
             VN     A +  +G + LHLA      D++  L     L   A        G +   L
Sbjct: 141 ADVN-----AQEPCNGRTALHLAVDLQNPDLVSLL-----LKCGADVNRVTYQGYSPYQL 190

Query: 145 CVKHNQLDALKFLL----------DNMDDPQFLNAEDDY 173
                     + L              +D +  + E ++
Sbjct: 191 TWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEF 229

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 48.7 bits (117), Expect = 6e-07
 Identities = 26/138 (18%), Positives = 46/138 (33%), Gaps = 35/138 (25%)

Query: 5   LYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEF---PLHAAALLGHVDFEGEIRRQKP 61
           L+ A  +GC  ++  L Q          +   +      LH A++ G++           
Sbjct: 82  LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYL----------- 130

Query: 62  ELAGEL-----------DSNQFSALHIASQKVHVDKIKALLQ----VNPAWCFAGDLDG- 105
            +   L             N  +ALH+A    + D +  LL+    VN          G 
Sbjct: 131 GIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN-----RVTYQGY 185

Query: 106 SPLHLAAMKGRIDVLEEL 123
           SP  L   +    + ++L
Sbjct: 186 SPYQLTWGRPSTRIQQQL 203

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 35/142 (24%), Positives = 43/142 (30%), Gaps = 35/142 (24%)

Query: 100 AGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAAS------ATMIWGETILHLCVKHNQLD 152
               DG S LHLA +     +  E+ R                   +T LHL V  NQ +
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIR---QVKGDLAFLNFQNNLQQTPLHLAVITNQPE 59

Query: 153 ALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLT- 211
             + LL    DP      D  G T   LA     C Q  +  V              LT 
Sbjct: 60  IAEALLGAGCDP---ELRDFRGNTPLHLA-----CEQGCLASVG------------VLTQ 99

Query: 212 ----TRTMIEVNALNANGFMAL 229
                     + A N NG   L
Sbjct: 100 SCTTPHLHSILKATNYNGHTCL 121

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 69.4 bits (171), Expect = 2e-13
 Identities = 47/199 (23%), Positives = 71/199 (35%), Gaps = 49/199 (24%)

Query: 5   LYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEF---PLHAAALLGHVDFEGEIRRQKP 61
           L+ AA +G    +  LL +          N  ++    PLH  A  GHV           
Sbjct: 249 LHLAAQEGHAEMVALLLSKQ------ANGNLGNKSGLTPLHLVAQEGHV----------- 291

Query: 62  ELAGEL----------DSNQFSALHIASQKVHVDKIKALLQ----VNPAWCFAGDLDG-S 106
            +A  L              ++ LH+AS   ++  +K LLQ    VN     A    G S
Sbjct: 292 PVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN-----AKTKLGYS 346

Query: 107 PLHLAAMKGRIDVLEELFRTRPLAASA----TMIWGETILHLCVKHNQLDALKFLLDNMD 162
           PLH AA +G  D++  L     L   A        G T L +  +   +     L    D
Sbjct: 347 PLHQAAQQGHTDIVTLL-----LKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTD 401

Query: 163 DPQFLNAEDDYGMTITQLA 181
           +  F+   D + M+  +  
Sbjct: 402 ETSFVLVSDKHRMSFPETV 420

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 69.1 bits (170), Expect = 3e-13
 Identities = 58/214 (27%), Positives = 81/214 (37%), Gaps = 57/214 (26%)

Query: 5   LYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEF---PLHAAALLGHVDFEGEIRRQKP 61
           L+ AA  G       LLQ          VN  ++    PLH AA +GH            
Sbjct: 51  LHMAARAGHTEVAKYLLQNK------AKVNAKAKDDQTPLHCAARIGHT----------- 93

Query: 62  ELAGEL----------DSNQFSALHIASQKVHVDKIKALLQ----VNPAWCFAGDLDG-S 106
            +   L           +   + LHIA+++ HV+ + ALL+                G +
Sbjct: 94  NMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA-----CMTKKGFT 148

Query: 107 PLHLAAMKGRIDVLEELFRTRPLAASA----TMIWGETILHLCVKHNQLDALKFLLDNMD 162
           PLH+AA  G++ V E L     L   A        G T LH+ V HN LD +K LL    
Sbjct: 149 PLHVAAKYGKVRVAELL-----LERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG 203

Query: 163 DPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVE 196
            P   ++    G T   +A       QN VE+  
Sbjct: 204 SP---HSPAWNGYTPLHIA-----AKQNQVEVAR 229

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 68.3 bits (168), Expect = 5e-13
 Identities = 51/214 (23%), Positives = 82/214 (38%), Gaps = 57/214 (26%)

Query: 5   LYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEF---PLHAAALLGHVDFEGEIRRQKP 61
           L+ A+  G  P +  LLQ+          N  +     PLH AA  GH            
Sbjct: 18  LHVASFMGHLPIVKNLLQRG------ASPNVSNVKVETPLHMAARAGHT----------- 60

Query: 62  ELAGEL----------DSNQFSALHIASQKVHVDKIKALLQ----VNPAWCFAGDLDG-S 106
           E+A  L            +  + LH A++  H + +K LL+     N          G +
Sbjct: 61  EVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPN-----LATTAGHT 115

Query: 107 PLHLAAMKGRIDVLEELFRTRPLAASA----TMIWGETILHLCVKHNQLDALKFLLDNMD 162
           PLH+AA +G ++ +  L     L   A        G T LH+  K+ ++   + LL+   
Sbjct: 116 PLHIAAREGHVETVLAL-----LEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA 170

Query: 163 DPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVE 196
            P   NA    G+T   +A        N +++V+
Sbjct: 171 HP---NAAGKNGLTPLHVA-----VHHNNLDIVK 196

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 67.1 bits (165), Expect = 1e-12
 Identities = 47/214 (21%), Positives = 74/214 (34%), Gaps = 57/214 (26%)

Query: 5   LYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEF---PLHAAALLGHVDFEGEIRRQKP 61
           L+ A        +  LL +          +  +     PLH AA    V           
Sbjct: 183 LHVAVHHNNLDIVKLLLPRG------GSPHSPAWNGYTPLHIAAKQNQV----------- 225

Query: 62  ELAGEL----------DSNQFSALHIASQKVHVDKIKALLQ----VNPAWCFAGDLDG-S 106
           E+A  L               + LH+A+Q+ H + +  LL      N      G+  G +
Sbjct: 226 EVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGN-----LGNKSGLT 280

Query: 107 PLHLAAMKGRIDVLEELFRTRPLAASA----TMIWGETILHLCVKHNQLDALKFLLDNMD 162
           PLHL A +G + V + L     +        T   G T LH+   +  +  +KFLL +  
Sbjct: 281 PLHLVAQEGHVPVADVL-----IKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQA 335

Query: 163 DPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVE 196
           D    NA+   G +    A       Q   ++V 
Sbjct: 336 DV---NAKTKLGYSPLHQA-----AQQGHTDIVT 361

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 62.5 bits (153), Expect = 4e-11
 Identities = 35/138 (25%), Positives = 55/138 (39%), Gaps = 27/138 (19%)

Query: 68  DSNQFSALHIASQKVHVDKIKALLQ----VNPAWCFAGDLDG-SPLHLAAMKGRIDVLEE 122
             +  + LH+AS   H+  +K LLQ     N       ++   +PLH+AA  G  +V + 
Sbjct: 11  GESGLTPLHVASFMGHLPIVKNLLQRGASPN-----VSNVKVETPLHMAARAGHTEVAKY 65

Query: 123 LFRTRPLAASATM----IWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTIT 178
           L     L   A +       +T LH   +    + +K LL+N  +P   N     G T  
Sbjct: 66  L-----LQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANP---NLATTAGHTPL 117

Query: 179 QLAVAVKLCFQNLVELVE 196
            +A       +  VE V 
Sbjct: 118 HIA-----AREGHVETVL 130

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 68.7 bits (169), Expect = 2e-13
 Identities = 32/172 (18%), Positives = 50/172 (29%), Gaps = 49/172 (28%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGEL----------DSNQFSALHIASQKVHVDKIKA 89
           PLH A   GH            E+   L          D  QF+ LH A+ K  V+    
Sbjct: 94  PLHNACSYGHY-----------EVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSL 142

Query: 90  LLQ----VNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHL 144
           LL              +  G S + +A      + L   F+            G ++L  
Sbjct: 143 LLSHGADPT-----LVNCHGKSAVDMAPTPELRERLTYEFK------------GHSLLQA 185

Query: 145 CVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVE 196
             + +     K L   + +      +     T   L  AV        ++ E
Sbjct: 186 AREADLAKVKKTLALEIIN----FKQPQSHETA--LHCAVASLHPKRKQVAE 231

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 62.1 bits (152), Expect = 4e-11
 Identities = 41/219 (18%), Positives = 65/219 (29%), Gaps = 56/219 (25%)

Query: 5   LYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEF---PLHAAALLGHVDF-EGEIRRQK 60
           L+EAA K        LL              ++      +  A      +    E +   
Sbjct: 128 LHEAASKNRVEVCSLLLSHG------ADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHS 181

Query: 61  P---------ELAGEL----------DSNQFSALHIASQKVHVDKI---KALLQ----VN 94
                         +             +  +ALH A   +H  +    + LL+    VN
Sbjct: 182 LLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVN 241

Query: 95  PAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASA----TMIWGETILHLCVKHN 149
                  + D  +PLH+AA +   DV+E L         A        G+T LH      
Sbjct: 242 -----EKNKDFMTPLHVAAERAHNDVMEVL-----HKHGAKMNALDSLGQTALHRAALAG 291

Query: 150 QLDALKFLLDNMDDPQFLNAEDDYGMTITQLA--VAVKL 186
            L   + LL    DP   +     G T  Q+      ++
Sbjct: 292 HLQTCRLLLSYGSDP---SIISLQGFTAAQMGNEAVQQI 327

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 54.8 bits (133), Expect = 1e-08
 Identities = 28/119 (23%), Positives = 45/119 (37%), Gaps = 23/119 (19%)

Query: 68  DSNQFSALHIASQKVHVDKIKALL-----QVNPAWCFAGDLDGS-PLHLAAMKGRIDVLE 121
              +   L  A++  + +K+ ALL       +     A D   S PLHLAA   R+ +++
Sbjct: 21  GEYKKDELLEAARSGNEEKLMALLTPLNVNCH-----ASDGRKSTPLHLAAGYNRVRIVQ 75

Query: 122 ELFRTRPLAASA----TMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMT 176
            L     L   A        G   LH    +   +  + LL +      +NA D +  T
Sbjct: 76  LL-----LQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC---VNAMDLWQFT 126

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 16/103 (15%)

Query: 74  ALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRIDVLEELFRTRPLAASA 133
           AL +A                      G+     L  AA  G  + L  L     +   A
Sbjct: 7   ALDLADPSAKAVL-------------TGEYKKDELLEAARSGNEEKLMALLTPLNVNCHA 53

Query: 134 TMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMT 176
           +     T LHL   +N++  ++ LL +  D    +A+D  G+ 
Sbjct: 54  SDGRKSTPLHLAAGYNRVRIVQLLLQHGADV---HAKDKGGLV 93

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 67.5 bits (165), Expect = 3e-13
 Identities = 34/141 (24%), Positives = 46/141 (32%), Gaps = 26/141 (18%)

Query: 68  DSNQFSALHIA---SQKVHVDKIKALLQVNP----------AWCFAGDLDG-SPLHLAAM 113
            S   + L  A    Q      I  LLQ++           A C      G S LH+A  
Sbjct: 40  GSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIE 99

Query: 114 KGRIDVLEEL------------FRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNM 161
           K  +  ++ L             R           +GE  L L     Q D + +LL+N 
Sbjct: 100 KRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENP 159

Query: 162 DDPQFLNAEDDYGMTITQLAV 182
             P  L A D  G T+    V
Sbjct: 160 HQPASLEATDSLGNTVLHALV 180

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 20/85 (23%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCF 99
            LHA  ++                    +S + SAL I      +     L         
Sbjct: 175 VLHALVMIAD------------------NSPENSALVIHMYDGLLQMGARLCP-TVQLEE 215

Query: 100 AGDLDG-SPLHLAAMKGRIDVLEEL 123
             +  G +PL LAA +G+I++   +
Sbjct: 216 ISNHQGLTPLKLAAKEGKIEIFRHI 240

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 45.5 bits (108), Expect = 7e-06
 Identities = 29/180 (16%), Positives = 45/180 (25%), Gaps = 41/180 (22%)

Query: 17  LLELLQQDQLIIGRVGVNCLSEF-----PLHAAALLGHVDF------------EGEIRRQ 59
           LL++ +        V   C  EF      LH A     +                   R 
Sbjct: 65  LLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRF 124

Query: 60  KPELAGELDSNQFSALHIASQKVHVDKIKALLQ--VNPAWCFAGDLDG-SPLHLAAMKGR 116
             +  G         L +A+     D +  LL+    PA   A D  G + LH   M   
Sbjct: 125 FQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIAD 184

Query: 117 IDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMT 176
                                  + L + +    L     L   +         +  G+T
Sbjct: 185 NSP------------------ENSALVIHMYDGLLQMGARLCPTVQL---EEISNHQGLT 223

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 66.5 bits (163), Expect = 5e-13
 Identities = 27/167 (16%), Positives = 60/167 (35%), Gaps = 34/167 (20%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPEL---AG----ELDSNQFSALHIASQKVHVDKIKALLQ 92
           PL  AA    V     +     +L    G    +  +   +ALHIA+   +++    L++
Sbjct: 6   PLLLAAKENDVQ---ALS----KLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLME 58

Query: 93  ----VNPAWCFAGDLDG-SPLHLAAMKGRIDVLEEL------------FRTRPLAASATM 135
               +      +   +G + LH+A +   ++++  L                       +
Sbjct: 59  AAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLI 118

Query: 136 IWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
            +GE  L         + ++ L+++  D     A+D  G T+  + +
Sbjct: 119 YYGEHPLSFAACVGSEEIVRLLIEHGADI---RAQDSLGNTVLHILI 162

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 25/137 (18%), Positives = 51/137 (37%), Gaps = 17/137 (12%)

Query: 73  SALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFR----TR 127
           S L +A+++  V  +  LL+            G + LH+AA+   ++    L        
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64

Query: 128 PLAASATMIWGETILHLCVKHNQLDALKFLLDN----------MDDPQFLNAEDDYGMTI 177
               ++ +  G+T LH+ V +  ++ ++ LL                   +    YG   
Sbjct: 65  FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHP 124

Query: 178 TQLAVAVKLCFQNLVEL 194
             L+ A  +  + +V L
Sbjct: 125 --LSFAACVGSEEIVRL 139

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 67.1 bits (164), Expect = 5e-13
 Identities = 41/227 (18%), Positives = 63/227 (27%), Gaps = 42/227 (18%)

Query: 40  PLHAAALLGHV-DFEGEIRRQKPELAGELDSNQ------FSALHIAS---QKVHVDKIKA 89
            +  A    +  + E  +   +       DS         + L  A         D I  
Sbjct: 16  SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIAL 75

Query: 90  LLQVNP----------AWCFAGDLDG-SPLHLAAMKGRIDVLEELFR------------- 125
           LL V            A        G + LH+A  +  + ++  L               
Sbjct: 76  LLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDF 135

Query: 126 TRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAV- 184
            +         +GE  L L    NQL  +KFLL N   P  ++A D  G T+    V V 
Sbjct: 136 FKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVA 195

Query: 185 --KLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMAL 229
              +     V  +          +       T+      N  G   L
Sbjct: 196 DNTVDNTKFVTSMYNEILILGAKLH-----PTLKLEEITNRKGLTPL 237

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 49.0 bits (117), Expect = 6e-07
 Identities = 24/139 (17%), Positives = 35/139 (25%), Gaps = 42/139 (30%)

Query: 40  PLHAAALLGHVD----------FEGEIRRQKPELAGELDSNQFSALHIASQKVHVDK--- 86
           PL  AA    +              +I  +        DS   + LH   +         
Sbjct: 151 PLSLAACTNQLAIVKFLLQNSWQPADISAR--------DSVGNTVLHALVEVADNTVDNT 202

Query: 87  ------------IKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASA 133
                       + A L          +  G +PL LAA  G+I VL  +     L    
Sbjct: 203 KFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYI-----LQREI 257

Query: 134 TMIWGETILHLCVKHNQLD 152
                    H    H+   
Sbjct: 258 H---EPECRHAAAHHHHHH 273

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 47.1 bits (112), Expect = 3e-06
 Identities = 32/180 (17%), Positives = 50/180 (27%), Gaps = 36/180 (20%)

Query: 17  LLELLQQDQLIIGRVGVNCLSEF-----PLHAAALLGH-------------VDFEGEIRR 58
           LL++ ++   +   V  +    +      LH A    +             V        
Sbjct: 76  LLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDF 135

Query: 59  QKPELAGELDSNQFSALHIASQKVHVDKIKALLQ--VNPAWCFAGDLDGS-PLHLAAMKG 115
            K              L +A+    +  +K LLQ    PA   A D  G+  LH      
Sbjct: 136 FKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVA 195

Query: 116 RIDVLEELFRTRP----LAASATMIW-----------GETILHLCVKHNQLDALKFLLDN 160
              V    F T      L   A +             G T L L     ++  L ++L  
Sbjct: 196 DNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR 255

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 66.3 bits (163), Expect = 6e-13
 Identities = 33/145 (22%), Positives = 55/145 (37%), Gaps = 7/145 (4%)

Query: 36  LSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQV-- 93
           +S +PLH A +        E+   KP L  + D +    LH +      +    LL    
Sbjct: 1   MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60

Query: 94  NPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLA-ASATMIWGETILHLCVKHNQL 151
           N       D  G +P H+A   G ++V++ L+        +     G T LHL V     
Sbjct: 61  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 120

Query: 152 DALKFLLDNMDDPQFLNAEDDYGMT 176
           +  +FL++N         +D +   
Sbjct: 121 EVSQFLIENGASV---RIKDKFNQI 142

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 52.1 bits (126), Expect = 4e-08
 Identities = 24/130 (18%), Positives = 37/130 (28%), Gaps = 19/130 (14%)

Query: 40  PLHAAALLGHVDF------EG-EIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQ 92
            LH A      +        G  +R          D      LH A+    +  I+ L  
Sbjct: 110 CLHLAVGKKWFEVSQFLIENGASVR--------IKDKFNQIPLHRAASVGSLKLIELLCG 161

Query: 93  VNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQL 151
           +  +     D  G +PL  A  +G  D    L              G     + +     
Sbjct: 162 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ-- 219

Query: 152 DALKFLLDNM 161
              KF L+N+
Sbjct: 220 -VKKFFLNNV 228

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 63.6 bits (156), Expect = 2e-12
 Identities = 28/157 (17%), Positives = 47/157 (29%), Gaps = 44/157 (28%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGEL-----------DSNQFSALHIASQKVHVDKIK 88
            +      G+                             D + FS LH A ++     ++
Sbjct: 8   DIFTQCREGNA-----------VAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVE 56

Query: 89  ALLQ----VNPAWCFAGDLDGS-PLHLAAMKGRIDVLEELFRTRPLAASATM----IWGE 139
            L+     +N       +     PLHLAA  G  D++++L     L   A +      G 
Sbjct: 57  MLIMRGARIN-----VMNRGDDTPLHLAASHGHRDIVQKL-----LQYKADINAVNEHGN 106

Query: 140 TILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMT 176
             LH      Q    + L+ N       +  + YG  
Sbjct: 107 VPLHYACFWGQDQVAEDLVANGALV---SICNKYGEM 140

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 62.4 bits (153), Expect = 6e-12
 Identities = 32/179 (17%), Positives = 56/179 (31%), Gaps = 50/179 (27%)

Query: 5   LYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEF---PLHAAALLGHVDFEGEIRRQKP 61
           ++    +G    +   L           +N   +    PLH A   G             
Sbjct: 9   IFTQCREGNAVAVRLWLDN-----TENDLNQGDDHGFSPLHWACREGRS----------- 52

Query: 62  ELAGEL-----------DSNQFSALHIASQKVHVDKIKALLQ----VNPAWCFAGDLDGS 106
            +  E+           +    + LH+A+   H D ++ LLQ    +N     A +  G+
Sbjct: 53  AVV-EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADIN-----AVNEHGN 106

Query: 107 -PLHLAAMKGRIDVLEELFRTRPLAASA----TMIWGETILHLCVKHNQLDALKFLLDN 160
            PLH A   G+  V E+L     +A  A       +GE  +       +    +     
Sbjct: 107 VPLHYACFWGQDQVAEDL-----VANGALVSICNKYGEMPVDKAKAPLRELLRERAEKM 160

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 60.5 bits (148), Expect = 3e-11
 Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 23/119 (19%)

Query: 68  DSNQFSALHIASQKVHVDKIKALLQ-----VNPAWCFAGDLDG-SPLHLAAMKGRIDVLE 121
                  +    ++ +   ++  L      +N      GD  G SPLH A  +GR  V+E
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLN-----QGDDHGFSPLHWACREGRSAVVE 56

Query: 122 ELFRTRPLAASA----TMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMT 176
            L     +   A         +T LHL   H   D ++ LL    D    NA +++G  
Sbjct: 57  ML-----IMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI---NAVNEHGNV 107

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 42.8 bits (102), Expect = 3e-05
 Identities = 9/82 (10%), Positives = 22/82 (26%), Gaps = 14/82 (17%)

Query: 101 GDLDGS-PLHLAAMKGRIDVLEELFRTRPLAASATMI-----WGETILHLCVKHNQLDAL 154
           G  +    +     +G    +        L  +   +      G + LH   +  +   +
Sbjct: 1   GSPEFMDDIFTQCREGNAVAVRLW-----LDNTENDLNQGDDHGFSPLHWACREGRSAVV 55

Query: 155 KFLLDNMDDPQFLNAEDDYGMT 176
           + L+         N  +    T
Sbjct: 56  EMLIMRGARI---NVMNRGDDT 74

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 63.2 bits (155), Expect = 3e-12
 Identities = 31/156 (19%), Positives = 45/156 (28%), Gaps = 43/156 (27%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGEL----------DSNQFSALHIASQKVHVDKIKA 89
            +H  A  G +                           D   F+ L  A+    +  ++ 
Sbjct: 6   SVHQLAAQGEM-----------LYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEF 54

Query: 90  LLQ----VNPAWCFAGDLDGS-PLHLAAMKGRIDVLEELFRTRPLAASA----TMIWGET 140
           LLQ                    L LA  KG  D+++ L     L            G T
Sbjct: 55  LLQNGADPQ-----LLGKGRESALSLACSKGYTDIVKML-----LDCGVDVNEYDWNGGT 104

Query: 141 ILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMT 176
            L   V  N +  +K LL++  DP     E D G  
Sbjct: 105 PLLYAVHGNHVKCVKMLLESGADP---TIETDSGYN 137

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 57.4 bits (140), Expect = 3e-10
 Identities = 34/178 (19%), Positives = 57/178 (32%), Gaps = 49/178 (27%)

Query: 5   LYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEF---PLHAAALLGHVDFEGEIRRQKP 61
           +++ A +G    L   ++Q+        +N   E    PL  AA  G +           
Sbjct: 7   VHQLAAQGEMLYLATRIEQE------NVINHTDEEGFTPLMWAAAHGQI----------- 49

Query: 62  ELAGEL----------DSNQFSALHIASQKVHVDKIKALLQ----VNPAWCFAGDLDGS- 106
            +   L             + SAL +A  K + D +K LL     VN       D +G  
Sbjct: 50  AVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVN-----EYDWNGGT 104

Query: 107 PLHLAAMKGRIDVLEELFRTRPLAASA----TMIWGETILHLCVKHNQLDALKFLLDN 160
           PL  A     +  ++ L     L + A        G   + L V        + +  +
Sbjct: 105 PLLYAVHGNHVKCVKML-----LESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH 157

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 64.2 bits (157), Expect = 3e-12
 Identities = 35/189 (18%), Positives = 56/189 (29%), Gaps = 40/189 (21%)

Query: 5   LYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELA 64
           L          T  E +        RV  N L    L  ++L G             +L 
Sbjct: 9   LPPGKRTNLRKTGSERIAHG----MRVKFNPLPLALLLDSSLEGEF-----------DLV 53

Query: 65  GEL----------DSNQFSALHIASQKVHVDKIKALLQ----VNPAWCFAGDLDGS-PLH 109
             +          +    +ALH A    H + +K L+Q    VN     A D DG  PLH
Sbjct: 54  QRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN-----AADSDGWTPLH 108

Query: 110 LAAMKGRIDVLEELFR--TRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFL 167
            AA    + V + L        A + + +         ++       +FL    +     
Sbjct: 109 CAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM--- 165

Query: 168 NAEDDYGMT 176
              +   + 
Sbjct: 166 GIMNKGVIY 174

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 57.6 bits (140), Expect = 6e-10
 Identities = 20/117 (17%), Positives = 39/117 (33%), Gaps = 21/117 (17%)

Query: 68  DSNQFSALHIASQKVHVDKIKALLQ----VNPAWCFAGDLDGSPLHLAAMKGRIDVLEEL 123
           +     +L    +          +     V         L  + L  ++++G  D+++ +
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVK-----FNPLPLALLLDSSLEGEFDLVQRI 56

Query: 124 FRTRPLAA----SATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMT 176
                +      S     G T LH  V     + +KFL+    +   +NA D  G T
Sbjct: 57  -----IYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN---VNAADSDGWT 105

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 23/168 (13%), Positives = 50/168 (29%), Gaps = 31/168 (18%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELAG---ELDSNQFSALHIASQKVHVDKIKALLQ---- 92
            L            G  R       G   + +    + L  +S +   D ++ ++     
Sbjct: 8   SLPPGKRTNLRK-TGSERIAH----GMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDD 62

Query: 93  VNPAWCFAGDLDGS-PLHLAAMKGRIDVLEELFRTRPLAASATM----IWGETILHLCVK 147
            +       + +G   LH A   G  ++++ L     +     +      G T LH    
Sbjct: 63  PS-----LPNDEGITALHNAVCAGHTEIVKFL-----VQFGVNVNAADSDGWTPLHCAAS 112

Query: 148 HNQLDALKFLLDNMDDPQFLNAEDDY-GMTITQLAVAVKLCFQNLVEL 194
            N +   KFL+++      + A       T       ++  +    + 
Sbjct: 113 CNNVQVCKFLVESGAA---VFAMTYSDMQTAADKCEEMEEGYTQCSQF 157

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 63.6 bits (156), Expect = 5e-12
 Identities = 34/114 (29%), Positives = 47/114 (41%), Gaps = 13/114 (11%)

Query: 68  DSNQFSALHIASQKVHVDKIKALLQ----VNPAWCFAGDLDG-SPLHLAAMKGRIDVLEE 122
           D    +ALH+A++    D  K LL+     N       D  G +PLH A       V + 
Sbjct: 22  DRTGETALHLAARYSRSDAAKRLLEASADAN-----IQDNMGRTPLHAAVSADAQGVFQI 76

Query: 123 LFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMT 176
           L R R     A M  G T L L  +      L+ L+++  D    NA DD G +
Sbjct: 77  LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV---NAVDDLGKS 127

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 60.5 bits (148), Expect = 6e-11
 Identities = 38/165 (23%), Positives = 59/165 (35%), Gaps = 26/165 (15%)

Query: 40  PLHAAALLGHVD-FEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQ----VN 94
           PLHAA        F+  IR +  +L      +  + L +A++      ++ L+     VN
Sbjct: 61  PLHAAVSADAQGVFQILIRNRATDL-DARMHDGTTPLILAARLAVEGMLEDLINSHADVN 119

Query: 95  PAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASA----TMIWGETILHLCVKHN 149
                A D  G S LH AA    +D    L     L   A         ET L L  +  
Sbjct: 120 -----AVDDLGKSALHWAAAVNNVDAAVVL-----LKNGANKDMQNNREETPLFLAAREG 169

Query: 150 QLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVEL 194
             +  K LLD+  +    +  D          +A +    ++V L
Sbjct: 170 SYETAKVLLDHFANR---DITDHMDRLP--RDIAQERMHHDIVRL 209

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 52.8 bits (128), Expect = 2e-08
 Identities = 28/140 (20%), Positives = 42/140 (30%), Gaps = 40/140 (28%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGEL----------DSNQFSALHIASQKVHVDKIKA 89
           PL  AA L               +  +L          D    SALH A+   +VD    
Sbjct: 95  PLILAARLAVE-----------GMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV 143

Query: 90  LL----QVNPAWCFAGDLDGS-PLHLAAMKGRIDVLEELFRTRPLAASA----TMIWGET 140
           LL      +       +     PL LAA +G  +  + L     L   A    T      
Sbjct: 144 LLKNGANKD-----MQNNREETPLFLAAREGSYETAKVL-----LDHFANRDITDHMDRL 193

Query: 141 ILHLCVKHNQLDALKFLLDN 160
              +  +    D ++ L + 
Sbjct: 194 PRDIAQERMHHDIVRLLDEY 213

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 44.3 bits (106), Expect = 1e-05
 Identities = 29/100 (29%), Positives = 39/100 (39%), Gaps = 14/100 (14%)

Query: 100 AGDLDGS-PLHLAAMKGRIDVLEELFRTRPLAASA----TMIWGETILHLCVKHNQLDAL 154
             D  G   LHLAA   R D  + L     L ASA        G T LH  V  +     
Sbjct: 20  QTDRTGETALHLAARYSRSDAAKRL-----LEASADANIQDNMGRTPLHAAVSADAQGVF 74

Query: 155 KFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVEL 194
           + L+ N      L+A    G T   L +A +L  + ++E 
Sbjct: 75  QILIRN--RATDLDARMHDGTTP--LILAARLAVEGMLED 110

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 60.9 bits (149), Expect = 7e-12
 Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 22/118 (18%)

Query: 68  DSNQFSALHIASQKVHVDKIKALLQ----VNPAWCFAGDLDG-SPLHLAAMKGRIDVLEE 122
           +    + LHIAS K  +  ++ LLQ     N       D  G +PLH A   G + V+E 
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNGSDPN-----VKDHAGWTPLHEACNHGHLKVVEL 61

Query: 123 LFRTRPLAASA----TMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMT 176
           L     L   A    T    ++ LH   K+  +D +K LL         NA + +G+ 
Sbjct: 62  L-----LQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASR---NAVNIFGLR 111

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 57.0 bits (139), Expect = 2e-10
 Identities = 29/140 (20%), Positives = 46/140 (32%), Gaps = 40/140 (28%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGEL----------DSNQFSALHIASQKVHVDKIKA 89
            LH A++ G +                L          D   ++ LH A    H+  ++ 
Sbjct: 13  LLHIASIKGDI-----------PSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVEL 61

Query: 90  LLQ----VNPAWCFAGDLDGS-PLHLAAMKGRIDVLEELFRTRPLAASATM----IWGET 140
           LLQ    VN             PLH AA  G +D+++ L     L+  A+     I+G  
Sbjct: 62  LLQHKALVN-----TTGYQNDSPLHDAAKNGHVDIVKLL-----LSYGASRNAVNIFGLR 111

Query: 141 ILHLCVKHNQLDALKFLLDN 160
            +      +    L     N
Sbjct: 112 PVDYTDDESMKSLLLLPEKN 131

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 63.7 bits (156), Expect = 1e-11
 Identities = 31/168 (18%), Positives = 52/168 (30%), Gaps = 39/168 (23%)

Query: 40  PLHAAALLGHVDF----------EGE------IRRQKPELAG----ELDSNQFSALHIAS 79
           P+H A +    D            G+          + E+             +ALH   
Sbjct: 87  PIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCV 146

Query: 80  Q--KVHVDKIKALLQ----VNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAAS 132
                +++ IK L+Q           A D    +PL  A      + L+ +  T P  +S
Sbjct: 147 GLGPEYLEMIKILVQLGASPT-----AKDKADETPLMRAMEFRNREALDLMMDTVPSKSS 201

Query: 133 ATM----IWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMT 176
             +      G + LH  +  N  D     ++   D    N ED+    
Sbjct: 202 LRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDV---NMEDNEHTV 246

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 61.4 bits (150), Expect = 6e-11
 Identities = 26/156 (16%), Positives = 42/156 (26%), Gaps = 31/156 (19%)

Query: 40  PLHAAALLGHVDFE--------G-EIRRQKPELAGELDSNQFSALHIASQKVHVDKIKAL 90
            LH    LG    E        G     +        D    + L  A +  + + +  +
Sbjct: 141 ALHWCVGLGPEYLEMIKILVQLGASPTAK--------DKADETPLMRAMEFRNREALDLM 192

Query: 91  LQVNPAWCFA----GDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASA----TMIWGETI 141
           +   P+         +  G S LH A +    DV         +                
Sbjct: 193 MDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRF-----VEMGIDVNMEDNEHTVP 247

Query: 142 LHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTI 177
           L+L V+   +   K LL   D           G T+
Sbjct: 248 LYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTV 283

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 60.7 bits (148), Expect = 1e-10
 Identities = 24/207 (11%), Positives = 50/207 (24%), Gaps = 50/207 (24%)

Query: 5   LYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEF---PLHAAALLGHVDFEGEIRRQKP 61
           L  A        L  ++         + ++  ++     LH A L+              
Sbjct: 177 LMRAMEFRNREALDLMMDTVPSKSS-LRLDYANKQGNSHLHWAILINWE----------- 224

Query: 62  ELAGEL----------DSNQFSALHIASQKVHVDKIKALLQ--VNPAWCFAGDLDG---- 105
           ++A             D+     L+++ +   V   K LLQ             +G    
Sbjct: 225 DVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVL 284

Query: 106 -------SPLHLAAMKGRIDVLEELFRTRPLAASA----TMIWGETILHLCVKHNQLDAL 154
                    +  AA   + +VL+ L              ++  G        K       
Sbjct: 285 PDRVVWLDFVPAAADPSKQEVLQLL-----QEKLDEVVRSLNTGAGGAVKRKKKAAPAVK 339

Query: 155 KFLLDNMDDPQFLNAEDDYGMTITQLA 181
           +  L                   + ++
Sbjct: 340 RMKLAPSAPV---RTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 54.5 bits (132), Expect = 2e-08
 Identities = 29/167 (17%), Positives = 55/167 (32%), Gaps = 46/167 (27%)

Query: 68  DSNQFSALHIASQKVHVDKIKALLQ----VNPAWCFAGDLDG-SPLHLAAMKGRIDVLEE 122
           D      +H+A++K   D+++ L++             +  G + LHLA   G +D  + 
Sbjct: 17  DDENMEKIHVAARKGQTDEVRRLIETGVSPT-----IQNRFGCTALHLACKFGCVDTAKY 71

Query: 123 LFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
           L          ++  G+  +HL V  N+ D +  L++            + G     L  
Sbjct: 72  LASVG---EVHSLWHGQKPIHLAVMANKTDLVVALVEG---------AKERGQMPESLL- 118

Query: 183 AVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMAL 229
                  +  E+ E                   I  +  +  G  AL
Sbjct: 119 ----NECDEREVNE-------------------IGSHVKHCKGQTAL 142

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 10/66 (15%)

Query: 100 AGDLDGS-PLHLAAMKGRIDVLEELFRTRPLAASA----TMIWGETILHLCVKHNQLDAL 154
             D +    +H+AA KG+ D +  L     +           +G T LHL  K   +D  
Sbjct: 15  KSDDENMEKIHVAARKGQTDEVRRL-----IETGVSPTIQNRFGCTALHLACKFGCVDTA 69

Query: 155 KFLLDN 160
           K+L   
Sbjct: 70  KYLASV 75

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 62.9 bits (153), Expect = 1e-11
 Identities = 28/151 (18%), Positives = 45/151 (29%), Gaps = 27/151 (17%)

Query: 74  ALHIA---SQKVHVDKIKALLQVNP----------AWCFAGDLDG-SPLHLAAMKGRIDV 119
            L  A         D I  LL +            +        G + LH+A  +     
Sbjct: 49  CLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHY 108

Query: 120 LEEL-------------FRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQF 166
           +E L                +P        +GE  L L    NQ   + +L +N      
Sbjct: 109 VELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQAD 168

Query: 167 LNAEDDYGMTITQLAVAVKLCFQNLVELVEE 197
           L  +D  G T+    VA+    +   + V +
Sbjct: 169 LRRQDSRGNTVLHALVAIADNTRENTKFVTK 199

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 24/112 (21%), Positives = 38/112 (33%), Gaps = 34/112 (30%)

Query: 38  EFPLHAAALLGHVD----------FEGEIRRQKPELAGELDSNQFSALHIASQKVHVDK- 86
           E PL  AA                 + ++RRQ        DS   + LH         + 
Sbjct: 141 ELPLSLAACTNQPHIVHYLTENGHKQADLRRQ--------DSRGNTVLHALVAIADNTRE 192

Query: 87  -------IKALL-----QVNPAWCFAG--DLDG-SPLHLAAMKGRIDVLEEL 123
                  +  LL     ++ P        + DG SPL +AA  G+I + + +
Sbjct: 193 NTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHI 244

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 26/198 (13%), Positives = 52/198 (26%), Gaps = 42/198 (21%)

Query: 5   LYEAAL------KGCEPTLLELLQQDQLIIGRVGVNCLSEF-----PLHAAALLGH---- 49
           L +A L          P LL++ ++   +   +       +      LH A         
Sbjct: 50  LPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYV 109

Query: 50  ---------VDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQ--VNPAWC 98
                    V  +   R  +P+  G         L +A+       +  L +     A  
Sbjct: 110 ELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADL 169

Query: 99  FAGDLDG-SPLHLAAM---------KGRIDVLEELFR------TRPLAASATMIWGETIL 142
              D  G + LH             K    + + L              +     G + L
Sbjct: 170 RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPL 229

Query: 143 HLCVKHNQLDALKFLLDN 160
            +  K  ++   + ++  
Sbjct: 230 MMAAKTGKIGIFQHIIRR 247

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 59.3 bits (145), Expect = 2e-11
 Identities = 29/121 (23%), Positives = 42/121 (34%), Gaps = 22/121 (18%)

Query: 65  GELDSNQFSALHIASQKVHVDKIKALLQ----VNPAWCFAGDLDGS-PLHLAAMKGRIDV 119
           G L S        A +   +D++K  +     VN          G  PLH AA  G++++
Sbjct: 1   GPLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVN-----RTLEGGRKPLHYAADCGQLEI 55

Query: 120 LEELFRTRPLAASA----TMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGM 175
           LE L     L   A          T L   V    +  +K LL    D      +   G+
Sbjct: 56  LEFL-----LLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK---TVKGPDGL 107

Query: 176 T 176
           T
Sbjct: 108 T 108

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 60.6 bits (148), Expect = 3e-11
 Identities = 29/146 (19%), Positives = 50/146 (34%), Gaps = 26/146 (17%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQ---VNPA 96
                   GH             +A ++ S   +    A++K     +  LL+   V+  
Sbjct: 17  EYLIEWKDGHS----PSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLEDRDVD-- 70

Query: 97  WCFAGDLDGS-PLHLAAMKGRIDVLEELFRTRPLAASA-----TMIWGETILHLCVKHNQ 150
              A D +G   L   A  G    +  L       A A      M  G T LH+   + +
Sbjct: 71  ---AVDENGRTALLFVAGLGSDKCVRLL-----AEAGADLDHRDMRGGLTALHMAAGYVR 122

Query: 151 LDALKFLLDNMDDPQFLNAEDDYGMT 176
            + ++ L++   D      ED+ G+T
Sbjct: 123 PEVVEALVELGADI---EVEDERGLT 145

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 52.9 bits (128), Expect = 1e-08
 Identities = 27/171 (15%), Positives = 49/171 (28%), Gaps = 38/171 (22%)

Query: 5   LYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEF--PLHAAALLGHVDFEGEIRRQKPE 62
                  G  P+ +               + +SE+  P   AA         ++      
Sbjct: 18  YLIEWKDGHSPSWVPSSYI--------AADVVSEYETPWWTAARKADEQALSQL------ 63

Query: 63  LAG----ELDSNQFSALHIASQKVHVDKIKALLQ----VNPAWCFAGDLDGS-PLHLAAM 113
           L       +D N  +AL   +       ++ L +    ++          G   LH+AA 
Sbjct: 64  LEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD----HRDMRGGLTALHMAAG 119

Query: 114 KGRIDVLEELFRTRPLAASA----TMIWGETILHLCVKHNQLDALKFLLDN 160
             R +V+E L     +   A        G T L L  +  +       +  
Sbjct: 120 YVRPEVVEAL-----VELGADIEVEDERGLTALELAREILKTTPKGNPMQF 165

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 59.7 bits (146), Expect = 3e-11
 Identities = 40/180 (22%), Positives = 64/180 (35%), Gaps = 52/180 (28%)

Query: 5   LYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEF---PLHAAALLGHVDFEGEIRRQKP 61
           L  AA +G    +  LL +       V  + L+ F    L      G             
Sbjct: 6   LSGAAARGDVQEVRRLLHR-----ELVHPDALNRFGKTALQVMMF-GST----------- 48

Query: 62  ELAGEL----------DSNQFSALHIASQKVHVDKIKALLQ----VNPAWCFAGDLDGS- 106
            +A EL          D++  S +H A++   +D +K L++    VN       D  G+ 
Sbjct: 49  AIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN-----VPDGTGAL 103

Query: 107 PLHLAAMKGRIDVLEELFRTRPLAAS-----ATMIWGETILHLCVKHNQLDALKFLLDNM 161
           P+HLA  +G   V+  L       A+          G T L L ++    D +  L  +M
Sbjct: 104 PIHLAVQEGHTAVVSFL-------AAESDLHRRDARGLTPLELALQRGAQDLVDILQGHM 156

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 57.4 bits (140), Expect = 2e-10
 Identities = 36/149 (24%), Positives = 54/149 (36%), Gaps = 30/149 (20%)

Query: 40  PLHAAALLGHVDFEGEIRR---QKPELAGELDSNQFSALHIASQKVHVDKIKALLQ---- 92
            L  AA  G V    E+RR   ++      L+    +AL +            LL+    
Sbjct: 5   RLSGAAARGDVQ---EVRRLLHRELVHPDALNRFGKTALQVMMFG-STAIALELLKQGAS 60

Query: 93  VNPAWCFAGDLDGS-PLHLAAMKGRIDVLEELFRTRPLAASATM----IWGETILHLCVK 147
            N       D  G+ P+H AA  G +D L+ L     +   A +      G   +HL V+
Sbjct: 61  PN-----VQDTSGTSPVHDAARTGFLDTLKVL-----VEHGADVNVPDGTGALPIHLAVQ 110

Query: 148 HNQLDALKFLLDNMDDPQFLNAEDDYGMT 176
                 + FL    D    L+  D  G+T
Sbjct: 111 EGHTAVVSFLAAESD----LHRRDARGLT 135

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 60.5 bits (148), Expect = 4e-11
 Identities = 33/170 (19%), Positives = 68/170 (40%), Gaps = 29/170 (17%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPEL---AG----ELDSNQFSALHIASQKVHVDKIKALLQ 92
            L AA          +++    E+         E+D+   + L+IA     ++  KAL+ 
Sbjct: 9   LLEAANQRDTK----KVK----EILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID 60

Query: 93  ----VNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVK 147
               +N       +    SP   A  +GR ++L  + +      +    +G   L    +
Sbjct: 61  RGADIN-----LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAE 115

Query: 148 HNQLDALKFLLDN-MDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVE 196
              +D +K LL++  +D    + ++D+G T    AV ++   Q   ++V+
Sbjct: 116 KGHIDNVKLLLEDGREDI---DFQNDFGYTALIEAVGLREGNQLYQDIVK 162

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 54.0 bits (131), Expect = 7e-09
 Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 42/173 (24%)

Query: 68  DSNQFSALHIASQKVHVDKIKALL----QVNPAWCFAGDLDGS-PLHLAAMKGRIDVLEE 122
                + L  A+Q+      + L     QV+       D +G+ PL++A     I++ + 
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVD-----EVDTEGNTPLNIAVHNNDIEIAKA 57

Query: 123 LFRTRPLAASA----TMIWGETILHLCVKHNQLDALKFLLDN--MDDPQFLNAEDDYGMT 176
           L     +   A         ++         + + L ++L +   D    LN  + YG  
Sbjct: 58  L-----IDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPD----LNKHNRYGGN 108

Query: 177 ITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMAL 229
               A       +  ++ V+             L      +++  N  G+ AL
Sbjct: 109 ALIPA-----AEKGHIDNVK------------LLLEDGREDIDFQNDFGYTAL 144

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 40.9 bits (97), Expect = 2e-04
 Identities = 27/171 (15%), Positives = 43/171 (25%), Gaps = 66/171 (38%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPEL---AG----ELDSNQFSALHIASQKVHVDKIKALLQ 92
           PL+ A     +    EI     +     G      +S   S    A  +   + +  +L+
Sbjct: 42  PLNIAVHNNDI----EI----AKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLK 93

Query: 93  -----VNPAWCFAGDLDGS-PLHLAAMKGRIDVLEELF--------------RTRPL--A 130
                +N       +  G   L  AA KG ID ++ L                T  L  A
Sbjct: 94  HATPDLN-----KHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYT-ALIEA 147

Query: 131 ASATMIW-----------------------GETILHLCVKHNQLDALKFLL 158
                                         G T +    +    +  K L 
Sbjct: 148 VGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILA 198

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 61.3 bits (150), Expect = 4e-11
 Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 24/128 (18%)

Query: 63  LAGELDSNQFSALHIASQKVHVDKIKALL--------QVNPAWCFAGDLDGS-PLHLAAM 113
           +A   D +  + LHIA  + ++  +  L+        +++       +     PLHLA +
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-----IYNNLRQTPLHLAVI 55

Query: 114 KGRIDVLEELFRTRPLAASATM----IWGETILHLCVKHNQLDALKFLLDNMDDPQF-LN 168
                V+  L     + A A+       G+T  HL  +H     L+ LLD+       L 
Sbjct: 56  TTLPSVVRLL-----VTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLE 110

Query: 169 AEDDYGMT 176
           A +  G+T
Sbjct: 111 ARNYDGLT 118

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 59.0 bits (144), Expect = 2e-10
 Identities = 40/191 (20%), Positives = 74/191 (38%), Gaps = 37/191 (19%)

Query: 5   LYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEF---PLHAAALLGHVDFEGEIRRQKP 61
           L+ A ++G  P +  L+  +    G   ++  +     PLH A +         +     
Sbjct: 13  LHIAVVQGNLPAVHRLV--NLFQQGGRELDIYNNLRQTPLHLAVITTLP----SV----V 62

Query: 62  EL---AG----ELDSNQFSALHIASQKVHVDKIKALLQVNPAWCF---AGDLDG-SPLHL 110
            L   AG     LD +  +A H+A +      ++ALL           A + DG + LH+
Sbjct: 63  RLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV 122

Query: 111 AAMKGRIDVLEELFRTRPLAASA-----TMIWGETILHLCVKHNQLDALKFLLDNMDDPQ 165
           A      + ++ L     L   A      +  G + L   V++N L  ++ LL +  +  
Sbjct: 123 AVNTECQETVQLL-----LERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN-- 175

Query: 166 FLNAEDDYGMT 176
            +NA+   G +
Sbjct: 176 -VNAQMYSGSS 185

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 57.1 bits (139), Expect = 8e-10
 Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 26/137 (18%)

Query: 40  PLHAAALLGHVDF-EGEIRRQKPELA--GELDSNQFSALHIASQKVHVDKIKALLQ---- 92
           PLH A + G++      +   +         ++ + + LH+A        ++ L+     
Sbjct: 12  PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS 71

Query: 93  VNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIW--------GETILH 143
                  A D  G +  HLA        L  L     L ++A            G T LH
Sbjct: 72  PM-----ALDRHGQTAAHLACEHRSPTCLRAL-----LDSAAPGTLDLEARNYDGLTALH 121

Query: 144 LCVKHNQLDALKFLLDN 160
           + V     + ++ LL+ 
Sbjct: 122 VAVNTECQETVQLLLER 138

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 52.1 bits (126), Expect = 4e-08
 Identities = 25/139 (17%), Positives = 44/139 (31%), Gaps = 37/139 (26%)

Query: 40  PLHAAALLGHVDF---------EGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKAL 90
            LH A      +          + +    K         +  S L  A +   +  ++ L
Sbjct: 119 ALHVAVNTECQETVQLLLERGADIDAVDIK---------SGRSPLIHAVENNSLSMVQLL 169

Query: 91  LQ----VNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASA----TMIWGETI 141
           LQ    VN     A    G S LH A+ +G + ++  L     + + A         +T 
Sbjct: 170 LQHGANVN-----AQMYSGSSALHSASGRGLLPLVRTL-----VRSGADSSLKNCHNDTP 219

Query: 142 LHLCVKHNQLDALKFLLDN 160
           L +      +D L+     
Sbjct: 220 LMVARSRRVIDILRGKATR 238

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 59.3 bits (145), Expect = 4e-11
 Identities = 33/155 (21%), Positives = 54/155 (34%), Gaps = 42/155 (27%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGEL---------DSNQFSALHIASQKVHVDKIKAL 90
            L  AA  G             +    L         D    S LH+A+Q  H    + L
Sbjct: 5   KLLEAARAGQD-----------DEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVL 53

Query: 91  LQ----VNPAWCFAGDLDGS-PLHLAAMKGRIDVLEELFRTRPLAASATM----IWGETI 141
           L+     +     A       PLH+AA +G  +++E L     L   A +    +   T 
Sbjct: 54  LRAGVSRD-----ARTKVDRTPLHMAASEGHANIVEVL-----LKHGADVNAKDMLKMTA 103

Query: 142 LHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMT 176
           LH   +HN  + ++ L+    D    + +  +  T
Sbjct: 104 LHWATEHNHQEVVELLIKYGADV---HTQSKFCKT 135

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 49.7 bits (120), Expect = 1e-07
 Identities = 28/137 (20%), Positives = 47/137 (34%), Gaps = 40/137 (29%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGEL----------DSNQFSALHIASQKVHVDKIKA 89
           PLH AA  GH                 L               + LH+A+ + H + ++ 
Sbjct: 37  PLHLAAQYGHF-----------STTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEV 85

Query: 90  LLQ----VNPAWCFAGDLDGS-PLHLAAMKGRIDVLEELFRTRPLAASATM----IWGET 140
           LL+    VN     A D+     LH A      +V+E L     +   A +     + +T
Sbjct: 86  LLKHGADVN-----AKDMLKMTALHWATEHNHQEVVELL-----IKYGADVHTQSKFCKT 135

Query: 141 ILHLCVKHNQLDALKFL 157
              + + +   D  + L
Sbjct: 136 AFDISIDNGNEDLAEIL 152

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 60.9 bits (149), Expect = 5e-11
 Identities = 39/157 (24%), Positives = 59/157 (37%), Gaps = 44/157 (28%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGEL-----------DSNQFSALHIASQKVHVDKIK 88
            LH AA  GH            E+   L           D   ++ +  A++  HVD +K
Sbjct: 80  CLHLAAKKGHY-----------EVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVK 128

Query: 89  ALLQ----VNPAWCFAGDLDGS-PLHLAAMKGRIDVLEELFRTRPLAASA----TMIWGE 139
            LL     +N       D + +  LH AA  G +D+ E L     LAA        I G+
Sbjct: 129 LLLSKGSDIN-----IRDNEENICLHWAAFSGCVDIAEIL-----LAAKCDLHAVNIHGD 178

Query: 140 TILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMT 176
           + LH+  + N+ D +   L    D      ++  G T
Sbjct: 179 SPLHIAARENRYDCVVLFLSRDSDV---TLKNKEGET 212

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 59.3 bits (145), Expect = 1e-10
 Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 25/120 (20%)

Query: 68  DSNQFSALHIASQKVHVDKIKALLQ----VNPAWCFAGDLDG-SPLHLAAMKGRIDVLEE 122
             N+ S LH A++  HVD    L+Q    ++         D  +PL  AA    ++ ++ 
Sbjct: 8   HQNKRSPLHAAAEAGHVDICHMLVQAGANID-----TCSEDQRTPLMEAAENNHLEAVKY 62

Query: 123 LFRTRPLAASA----TMIWGETILHLCVKHNQLDALKFLLDN--MDDPQFLNAEDDYGMT 176
           L     + A A        G T LHL  K    + +++LL N  MD    +N +DD G T
Sbjct: 63  L-----IKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMD----VNCQDDGGWT 113

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 56.3 bits (137), Expect = 2e-09
 Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 42/173 (24%)

Query: 5   LYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEF---PLHAAALLGHVDFEGEIRRQKP 61
           L+ AA KG    + + L    L  G++ VNC  +    P+  A    HVD          
Sbjct: 81  LHLAAKKGHYEVV-QYL----LSNGQMDVNCQDDGGWTPMIWATEYKHVDL--------V 127

Query: 62  EL---AG----ELDSNQFSALHIASQKVHVDKIKALLQ----VNPAWCFAGDLDG-SPLH 109
           +L    G      D+ +   LH A+    VD  + LL     ++     A ++ G SPLH
Sbjct: 128 KLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLH-----AVNIHGDSPLH 182

Query: 110 LAAMKGRIDVLEELFRTRPLAASATM----IWGETILHLCVKHNQLDALKFLL 158
           +AA + R D +        L+  + +      GET L     ++Q+ +   + 
Sbjct: 183 IAARENRYDCVVLF-----LSRDSDVTLKNKEGETPLQCASLNSQVWSALQMS 230

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 59.3 bits (145), Expect = 6e-11
 Identities = 42/156 (26%), Positives = 65/156 (41%), Gaps = 43/156 (27%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGEL----------DSNQFSALHIASQKVHVDKIKA 89
            L  AA  G             +    L          D++ ++ LH+A+   H++ ++ 
Sbjct: 17  KLLEAARAGRD-----------DEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEV 65

Query: 90  LLQ----VNPAWCFAGDLDGS-PLHLAAMKGRIDVLEELFRTRPLAASA----TMIWGET 140
           LL+    VN     A D  G  PL LAA+ G ++++E L     L   A      + G T
Sbjct: 66  LLKNGADVN-----AVDHAGMTPLRLAALFGHLEIVEVL-----LKNGADVNANDMEGHT 115

Query: 141 ILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMT 176
            LHL      L+ ++ LL N  D    NA+D +G T
Sbjct: 116 PLHLAAMFGHLEIVEVLLKNGADV---NAQDKFGKT 148

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 51.6 bits (125), Expect = 3e-08
 Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 40/138 (28%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGEL----------DSNQFSALHIASQKVHVDKIKA 89
           PLH AA  GH+           E+   L          D    + L +A+   H++ ++ 
Sbjct: 50  PLHLAAFNGHL-----------EIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEV 98

Query: 90  LLQ----VNPAWCFAGDLDGS-PLHLAAMKGRIDVLEELFRTRPLAASATM----IWGET 140
           LL+    VN     A D++G  PLHLAAM G ++++E L     L   A +     +G+T
Sbjct: 99  LLKNGADVN-----ANDMEGHTPLHLAAMFGHLEIVEVL-----LKNGADVNAQDKFGKT 148

Query: 141 ILHLCVKHNQLDALKFLL 158
              + + +   D  + L 
Sbjct: 149 AFDISIDNGNEDLAEILQ 166

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 60.6 bits (148), Expect = 8e-11
 Identities = 43/194 (22%), Positives = 71/194 (36%), Gaps = 54/194 (27%)

Query: 5   LYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEF---PLHAAALLGHVDFEGEIRRQKP 61
           ++EAA+ G + +L  L+ Q         VN ++     PLH A L GH+           
Sbjct: 63  MHEAAIHGHQLSLRNLISQG------WAVNIITADHVSPLHEACLGGHL----------- 105

Query: 62  ELAGEL----------DSNQFSALHIASQKVHVDKIKALLQ----VNPAWCFAGDLDG-S 106
                L           ++  + L  A      D +  LLQ    V P      + D  S
Sbjct: 106 SCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP------ESDLAS 159

Query: 107 PLHLAAMKGRIDVLEELFRTRPLAASATM----IWGETILHLCVKHNQLDALKFLLDNMD 162
           P+H AA +G ++ +  L     +A    +        T L+L  ++ Q   +K LL++  
Sbjct: 160 PIHEAARRGHVECVNSL-----IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGA 214

Query: 163 DPQFLNAEDDYGMT 176
           D    N       +
Sbjct: 215 DV---NQ-GKGQDS 224

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 57.9 bits (141), Expect = 8e-10
 Identities = 25/146 (17%), Positives = 41/146 (28%), Gaps = 31/146 (21%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQ----VNP 95
           P       G       +             + +S +H A+   H   ++ L+     VN 
Sbjct: 36  PAGPRDFPGIRLLSNPLMGD--------AVSDWSPMHEAAIHGHQLSLRNLISQGWAVN- 86

Query: 96  AWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASA----TMIWGETILHLCVKHNQ 150
                   D  SPLH A + G +  ++ L     L   A          T L        
Sbjct: 87  ----IITADHVSPLHEACLGGHLSCVKIL-----LKHGAQVNGVTADWHTPLFNACVSGS 137

Query: 151 LDALKFLLDNMDDPQFLNAEDDYGMT 176
            D +  LL +    Q     +    +
Sbjct: 138 WDCVNLLLQHGASVQ----PESDLAS 159

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 48.3 bits (116), Expect = 1e-06
 Identities = 19/133 (14%), Positives = 36/133 (27%), Gaps = 39/133 (29%)

Query: 5   LYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEF---PLHAAALLGHVDFEGEIRRQKP 61
           ++EAA +G    +  L+           ++        PL+ A                 
Sbjct: 161 IHEAARRGHVECVNSLIAYG------GNIDHKISHLGTPLYLACENQQR----------- 203

Query: 62  ELAGEL---------DSNQFSALHIASQKVHVDKIKALLQ----VNPAWCFAGDLDG-SP 107
               +L            Q S LH   +    +    L+            A + +G  P
Sbjct: 204 ACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMDFGADTQ-----AKNAEGKRP 258

Query: 108 LHLAAMKGRIDVL 120
           + L   +  +  L
Sbjct: 259 VELVPPESPLAQL 271

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 46.3 bits (111), Expect = 5e-06
 Identities = 19/110 (17%), Positives = 27/110 (24%), Gaps = 21/110 (19%)

Query: 72  FSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLA 130
                              L  NP       +   SP+H AA+ G    L  L     ++
Sbjct: 34  SKPAGPRDFPGI------RLLSNPL--MGDAVSDWSPMHEAAIHGHQLSLRNL-----IS 80

Query: 131 ASA----TMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMT 176
                        + LH       L  +K LL +       N       T
Sbjct: 81  QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV---NGVTADWHT 127

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 60.6 bits (148), Expect = 8e-11
 Identities = 34/214 (15%), Positives = 60/214 (28%), Gaps = 40/214 (18%)

Query: 5   LYEAALKGCEPTLLELLQQ-------DQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIR 57
           L+ A           LLQ                  +C  +     AA+    + E E  
Sbjct: 82  LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEE 141

Query: 58  RQKPELAG----ELDSNQFSALHIASQKVHVDKIKALLQ----VNPAWCFAGDLDG--SP 107
            +  E         + +  + LH+A      + ++ L      +N       +     +P
Sbjct: 142 PRD-EDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN-----KPEPTCGRTP 195

Query: 108 LHLAAMKGRIDVLEELFRTRPLAASA----TMIWGETILHLCVKHNQLDALKFLLDNMDD 163
           LHLA       VLE L     L A A     M  G T L   +        + L  +   
Sbjct: 196 LHLAVEAQAASVLELL-----LKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP 250

Query: 164 PQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEE 197
                 +    ++    +        +  +  +E
Sbjct: 251 E---PEDGGDKLSPCSSS-----GSDSDSDNRDE 276

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 59.5 bits (145), Expect = 2e-10
 Identities = 31/172 (18%), Positives = 49/172 (28%), Gaps = 19/172 (11%)

Query: 65  GELDSNQFSALHIASQKVHVDKIKALLQ--VNPAWCFAGDLDGS-PLHLAAMKGRIDVLE 121
           G +  +  +ALH+A    H   +  LL       +    +  G   LHLAA+ G    +E
Sbjct: 3   GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE 62

Query: 122 ELFRTRPLAASA----TMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTI 177
           +L      AA A        G T LHL  +         LL           +       
Sbjct: 63  KL-----YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSH---PRDASDTYLT 114

Query: 178 TQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMAL 229
                             +    +              +++ A N +G   L
Sbjct: 115 QSQDCTPDTSHAPAAVDSQPNPEN----EEEPRDEDWRLQLEAENYDGHTPL 162

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 52.5 bits (127), Expect = 5e-08
 Identities = 42/196 (21%), Positives = 64/196 (32%), Gaps = 38/196 (19%)

Query: 5   LYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEF---PLHAAALLGHVDFEGEIRRQKP 61
           L+ A +   EP L  LL       G   ++  ++     LH AA+LG             
Sbjct: 13  LHLAVIHQHEPFLDFLLGFS---AGHEYLDLQNDLGQTALHLAAILGEAST--------V 61

Query: 62  EL---AG----ELDSNQFSALHIASQKVHVDKIKALLQ-------------VNPAWCFAG 101
           E    AG      +    +ALH+A +         LLQ             +  +     
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121

Query: 102 DLDGSPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNM 161
           D   +P  + +     +  E       L   A    G T LH+ V H   + ++ L D  
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG 181

Query: 162 DDPQFLNAED-DYGMT 176
            D   LN  +   G T
Sbjct: 182 AD---LNKPEPTCGRT 194

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 49.9 bits (120), Expect = 3e-07
 Identities = 16/96 (16%), Positives = 22/96 (22%), Gaps = 25/96 (26%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPEL---AG----ELDSNQFSALHIASQKVHVDKIKALLQ 92
           PLH A                 EL   AG           + L  A  + +    + L  
Sbjct: 195 PLHLAVEAQAASVL--------ELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRA 246

Query: 93  ----VNPAWCFAGDLDG-SPLHLAAMKGRIDVLEEL 123
                          D  SP   +      D  +E 
Sbjct: 247 HGAPEP-----EDGGDKLSPCSSSGSDSDSDNRDEG 277

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 60.2 bits (147), Expect = 1e-10
 Identities = 36/165 (21%), Positives = 57/165 (34%), Gaps = 33/165 (20%)

Query: 40  PLHAAALLGHVDF-EGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQ----VN 94
           PL  A      +  + E+ RQ          +  +A     + +  D  + L        
Sbjct: 142 PLDIAEEEAMEELLQNEVNRQ--------GVDIEAARKEEERIMLRDARQWLNSGHINDV 193

Query: 95  PAWCFAGDLDGS-PLHLAAMKGRIDVLEELFRTRPLAA----SATMIWGETILHLCVKHN 149
                     G   LH+AA KG  +VL+ L     + A    +     G T LH      
Sbjct: 194 -----RHAKSGGTALHVAAAKGYTEVLKLL-----IQARYDVNIKDYDGWTPLHAAAHWG 243

Query: 150 QLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVEL 194
           + +A + L++N+ D     A +  G T     VA +     L EL
Sbjct: 244 KEEACRILVENLCDM---EAVNKVGQTA--FDVADEDILGYLEEL 283

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 57.1 bits (139), Expect = 1e-09
 Identities = 31/171 (18%), Positives = 53/171 (30%), Gaps = 39/171 (22%)

Query: 68  DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRIDVLEELFRTR 127
           D+ Q     +         ++  +            DG+    A   G  + +  L    
Sbjct: 5   DAKQKRNEQLKRWIGSETDLEPPVV-KRKKTKVKFDDGAVFLAACSSGDTEEVLRL---- 59

Query: 128 PLAASA----TMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVA 183
            L   A      + G T LH     + +D +KFL++N  +    N  D+ G      A  
Sbjct: 60  -LERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANI---NQPDNEGWIPLHAA-- 113

Query: 184 VKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIE----VNALNANGFMALD 230
                   +++ E            +L     I     V A+N+ G   LD
Sbjct: 114 ---ASCGYLDIAE------------YL-----ISQGAHVGAVNSEGDTPLD 144

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 55.6 bits (135), Expect = 5e-09
 Identities = 32/163 (19%), Positives = 54/163 (33%), Gaps = 42/163 (25%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGEL----------DSNQFSALHIASQKVHVDKIKA 89
              AA   G             E    L          + +  +ALH A    +VD +K 
Sbjct: 43  VFLAACSSGDT-----------EEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKF 91

Query: 90  LLQ----VNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATM----IWGET 140
           L++    +N       D +G  PLH AA  G +D+ E L     ++  A +      G+T
Sbjct: 92  LVENGANIN-----QPDNEGWIPLHAAASCGYLDIAEYL-----ISQGAHVGAVNSEGDT 141

Query: 141 ILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVA 183
            L +  +    + L+  ++       + A       I      
Sbjct: 142 PLDIAEEEAMEELLQNEVNRQGV--DIEAARKEEERIMLRDAR 182

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 52.9 bits (128), Expect = 3e-08
 Identities = 24/147 (16%), Positives = 50/147 (34%), Gaps = 26/147 (17%)

Query: 40  PLHAAALLGHVD-FEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQ----VN 94
                  +G     E  + ++K     ++  +  +    A      +++  LL+    +N
Sbjct: 11  NEQLKRWIGSETDLEPPVVKRKKT---KVKFDDGAVFLAACSSGDTEEVLRLLERGADIN 67

Query: 95  PAWCFAGDLDGS-PLHLAAMKGRIDVLEELFRTRPLAASA----TMIWGETILHLCVKHN 149
                  ++DG   LH A +   +D+++ L     +   A        G   LH      
Sbjct: 68  -----YANVDGLTALHQACIDDNVDMVKFL-----VENGANINQPDNEGWIPLHAAASCG 117

Query: 150 QLDALKFLLDNMDDPQFLNAEDDYGMT 176
            LD  ++L+        + A +  G T
Sbjct: 118 YLDIAEYLISQGAH---VGAVNSEGDT 141

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 59.5 bits (144), Expect = 1e-10
 Identities = 37/158 (23%), Positives = 57/158 (36%), Gaps = 35/158 (22%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGEL----------DSNQFSALHIASQKVHVDKIKA 89
             + A                 EL   +          D +  +ALH A    H + ++ 
Sbjct: 10  ICNLAYSGKL-----------DELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEF 58

Query: 90  LLQ----VNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHL 144
           LLQ    VN       D  G SPLH+AA  G  ++++ L   +    +A    G T LH 
Sbjct: 59  LLQLGVPVN-----DKDDAGWSPLHIAASAGXDEIVKALL-VKGAHVNAVNQNGCTPLHY 112

Query: 145 CVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
               N+ +    LL+   +    +A+D Y  T    A 
Sbjct: 113 AASKNRHEIAVMLLEGGAN---PDAKDHYDATAMHRAA 147

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 53.3 bits (128), Expect = 1e-08
 Identities = 37/153 (24%), Positives = 49/153 (32%), Gaps = 25/153 (16%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGEL----------DSNQFSALHIASQKVHVDKIKA 89
            LH A   GH            E+   L          D   +S LHIA+     + +KA
Sbjct: 43  ALHWACSAGHT-----------EIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKA 91

Query: 90  LLQVNPAWCFAGDLDGSPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHN 149
           LL              +PLH AA K R ++   L         A   +  T +H      
Sbjct: 92  LLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL-EGGANPDAKDHYDATAMHRAAAKG 150

Query: 150 QLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
            L  +  LL         N +D  G T   LA 
Sbjct: 151 NLKMVHILLFYKAS---TNIQDTEGNTPLHLAC 180

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 49.9 bits (119), Expect = 2e-07
 Identities = 31/156 (19%), Positives = 55/156 (35%), Gaps = 7/156 (4%)

Query: 5   LYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELA 64
           L+ AA  G +  +  LL +   +      N     PLH AA     +    +        
Sbjct: 77  LHIAASAGXDEIVKALLVKGAHVNAV---NQNGCTPLHYAASKNRHEIAVMLLEGGANP- 132

Query: 65  GELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRIDVLEELF 124
              D    +A+H A+ K ++  +  LL    +         +PLHLA  + R++  + L 
Sbjct: 133 DAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV 192

Query: 125 RTRPLAASATMIWGETILHLCVKHNQLDALKFLLDN 160
            T+  +        +T L +      L  +   L  
Sbjct: 193 -TQGASIYIENKEEKTPLQVAKGG--LGLILKRLAE 225

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 49.5 bits (118), Expect = 3e-07
 Identities = 22/122 (18%), Positives = 38/122 (31%), Gaps = 22/122 (18%)

Query: 70  NQFSALHIASQKVHVDKIKALL----QVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELF 124
           +     ++A      +  + +L              D D  + LH A   G  +++E L 
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSLAT-----RTDQDSRTALHWACSAGHTEIVEFL- 59

Query: 125 RTRPLAASA----TMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQL 180
               L            G + LH+       + +K LL        +NA +  G T    
Sbjct: 60  ----LQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAH---VNAVNQNGCTPLHY 112

Query: 181 AV 182
           A 
Sbjct: 113 AA 114

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 59.4 bits (145), Expect = 2e-10
 Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 23/121 (19%)

Query: 66  ELDSNQFSALHIASQKVHVDKIKALLQ----VNPAWCFAGDLDG-SPLHLAAMKGRIDVL 120
            +D      +  A+Q    ++ + L++    V        D +  + LH AA+  RID++
Sbjct: 4   HIDDYSTWDIVKATQYGIYERCRELVEAGYDVR-----QPDKENVTLLHWAAINNRIDLV 58

Query: 121 EELFRTRPLAASA-----TMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGM 175
           +       ++  A           T LH   +   L  +  L+    DP   +  D  G 
Sbjct: 59  KYY-----ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADP---SLIDGEGC 110

Query: 176 T 176
           +
Sbjct: 111 S 111

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 59.4 bits (145), Expect = 2e-10
 Identities = 31/155 (20%), Positives = 53/155 (34%), Gaps = 40/155 (25%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGEL----------DSNQFSALHIASQKVHVDKIKA 89
            +  A   G             E   EL          D    + LH A+    +D +K 
Sbjct: 12  DIVKATQYGIY-----------ERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKY 60

Query: 90  LLQ----VNPAWCFAGDLDGSPLHLAAMKGRIDVLEELFRTRPLAA----SATMIWGETI 141
            +     V+      GDL+ +PLH A  +G + ++ +L     +      S     G + 
Sbjct: 61  YISKGAIVDQL---GGDLNSTPLHWATRQGHLSMVVQL-----MKYGADPSLIDGEGCSC 112

Query: 142 LHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMT 176
           +HL  +      + +L+    D    +  D  GMT
Sbjct: 113 IHLAAQFGHTSIVAYLIAKGQDV---DMMDQNGMT 144

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 50.9 bits (123), Expect = 1e-07
 Identities = 34/188 (18%), Positives = 60/188 (31%), Gaps = 71/188 (37%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELA------G----ELDSNQ-FSALHIASQKVHVDKIK 88
            LH AA+   +           +L       G    +L  +   + LH A+++ H+  + 
Sbjct: 45  LLHWAAINNRI-----------DLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVV 93

Query: 89  ALLQ----VNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELF-------------RTRPL- 129
            L++     +       D +G S +HLAA  G   ++  L               T PL 
Sbjct: 94  QLMKYGADPS-----LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMT-PLM 147

Query: 130 -AAS--------------------ATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLN 168
            AA                            T LH  V       +  LL+   +   ++
Sbjct: 148 WAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN---VD 204

Query: 169 AEDDYGMT 176
           A++  G +
Sbjct: 205 AQNIKGES 212

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 50.5 bits (122), Expect = 1e-07
 Identities = 31/140 (22%), Positives = 46/140 (32%), Gaps = 32/140 (22%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGEL----------DSNQFSALHIASQKVH-VDKIK 88
            +H AA  GH             +   L          D N  + L  A+ + H VD  +
Sbjct: 112 CIHLAAQFGHT-----------SIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTR 160

Query: 89  ALLQVNPAWCFAGDLDGS-PLHLAAMKGRIDVLEELFRTRPLAASA----TMIWGETILH 143
            LL  N +         +  LH A + G   V+  L     L A A      I GE+ L 
Sbjct: 161 LLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLL-----LEAGANVDAQNIKGESALD 215

Query: 144 LCVKHNQLDALKFLLDNMDD 163
           L  +   +  +  L +    
Sbjct: 216 LAKQRKNVWMINHLQEARQA 235

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 25/141 (17%), Positives = 48/141 (34%), Gaps = 19/141 (13%)

Query: 68  DSNQFSALHIASQKVHVDKIKALLQVNPAWCF-------AGDLDGS-PLHLAAMKGRIDV 119
             +  + LH  +     +K + L+      C        A D D + PL LA +  R  +
Sbjct: 122 PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRL 181

Query: 120 LEELFRTRPLAASATM----IWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGM 175
           +  L     + A A          + LH    +     + ++L++      +   D  GM
Sbjct: 182 VAYL-----MKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGM 236

Query: 176 TITQLAVAVKLCFQNLVELVE 196
           T   L +      ++ V   +
Sbjct: 237 TA--LMIVAHNEGRDQVASAK 255

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 58.4 bits (142), Expect = 6e-10
 Identities = 29/151 (19%), Positives = 53/151 (35%), Gaps = 18/151 (11%)

Query: 40  PLHAAALLGHVD-FEGEIRRQKPELA--GELDSNQFSALHIASQKVHVDKI---KALL-- 91
            LH AA           +           ELD N  +AL I +     D++   K L+  
Sbjct: 202 ALHQAAANRDFGMMVYMLN-STKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEK 260

Query: 92  --QVN---PAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLC 145
             +V+    A   +    G + LH AA    + +++ L   +          G+T + L 
Sbjct: 261 GAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLA 320

Query: 146 VKHNQLDALKFLLDNMDDPQFLNAEDDYGMT 176
            +  +++ + +L+          A D    T
Sbjct: 321 AQEGRIEVVMYLIQQGASV---EAVDATDHT 348

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 58.0 bits (141), Expect = 9e-10
 Identities = 32/206 (15%), Positives = 60/206 (29%), Gaps = 53/206 (25%)

Query: 5   LYEAALKGCEPTLLELLQQDQLIIGRVG--VNCLSEF---PLHAAALLGHVDFEGEIRRQ 59
           L+  A         +L+  +       G  VN +      PL  A L             
Sbjct: 129 LHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRR--------- 179

Query: 60  KPELAGEL----------DSNQFSALHIASQKVHVDKIKALLQ-------VNPAWCFAGD 102
              L   L          + ++ SALH A+       +  +L        +        D
Sbjct: 180 --RLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIE-----ELD 232

Query: 103 LDGS-PLHLAAMKGRIDVLE----------ELFRTRPLAASATMIWGETILHLCVKHNQL 151
            +G   L + A     D +           ++         +    G T LH   + + +
Sbjct: 233 RNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNM 292

Query: 152 DALKFLLDNMD-DPQFLNAEDDYGMT 176
             +K+L+     +    + +D+ G T
Sbjct: 293 PIVKYLVGEKGSNK---DKQDEDGKT 315

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 31/181 (17%), Positives = 57/181 (31%), Gaps = 40/181 (22%)

Query: 5   LYEAALKGCEPTLLELLQQDQLIIGRVG--VNCLSEF---PLHAAALLGHVDFEG----- 54
           L++AA       ++ +L        ++   +  L       L   A     D        
Sbjct: 203 LHQAAANRDFGMMVYMLNS-----TKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLL 257

Query: 55  -----EIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALL-----QVNPAWCFAGDLD 104
                ++                +ALH A+Q  ++  +K L+       +       D D
Sbjct: 258 VEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD-----KQDED 312

Query: 105 G-SPLHLAAMKGRIDVLEELFRTRPLAASA----TMIWGETILHLCVKHNQLDALKFLLD 159
           G +P+ LAA +GRI+V+  L     +   A          T   L   +N  + +     
Sbjct: 313 GKTPIMLAAQEGRIEVVMYL-----IQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 367

Query: 160 N 160
            
Sbjct: 368 C 368

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 21/146 (14%), Positives = 39/146 (26%), Gaps = 26/146 (17%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCF 99
            L  A+  G++  +            EL               +          N     
Sbjct: 40  SLLEASYDGYIKRQRN----------ELQHYSLYPNPQGYGNGNDFLGDFNHT-NLQIPT 88

Query: 100 AGDLDGS-PLHLAAMKGRIDVLEELFRTRPLAASATMI---WGETILHLCVKHNQLDALK 155
             + +    LH  A  G   + E +        S  +I      T+LH    ++  +  +
Sbjct: 89  EPEPESPIKLHTEA-AGSYAITEPI-----TRESVNIIDPRHNRTVLHWIASNSSAEKSE 142

Query: 156 FLLDNMDDPQF-----LNAEDDYGMT 176
            L+ +           +NA D    T
Sbjct: 143 DLIVHEAKECIAAGADVNAMDCDENT 168

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 57.5 bits (140), Expect = 2e-10
 Identities = 27/157 (17%), Positives = 41/157 (26%), Gaps = 45/157 (28%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGEL----------DSNQFSALHIASQKVHVDKIKA 89
            L  AA  G V           E    L          +S     + +          + 
Sbjct: 15  WLATAAARGRV-----------EEVRALLEAGANPNAPNSYGRRPIQVMMMG-SARVAEL 62

Query: 90  LLQ----VNPAWCFAGDLDG--SPLHLAAMKGRIDVLEELFRTRPLAASATM----IWGE 139
           LL      N       D      P+H AA +G +D L  L       A A +     WG 
Sbjct: 63  LLLHGAEPN-----CADPATLTRPVHDAAREGFLDTLVVL-----HRAGARLDVRDAWGR 112

Query: 140 TILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMT 176
             + L  +    D  ++L             +   + 
Sbjct: 113 LPVDLAEELGHRDVARYLRAAAGGT---RGSNHARID 146

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 42.5 bits (101), Expect = 4e-05
 Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 18/88 (20%)

Query: 40  PLHAAALLGHVDF-EGEIRRQKPELAG----ELDSNQFSALHIASQKVHVDKIKALLQVN 94
           P+H AA  G +D      R      AG      D+     + +A +  H D  + L    
Sbjct: 81  PVHDAAREGFLDTLVVLHR------AGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA- 133

Query: 95  PAWCFAGDLDGS-PLHLAAMKGRIDVLE 121
                AG   GS    + A +G  D+ +
Sbjct: 134 -----AGGTRGSNHARIDAAEGPSDIPD 156

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 56.3 bits (137), Expect = 3e-10
 Identities = 26/141 (18%), Positives = 38/141 (26%), Gaps = 42/141 (29%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGEL----------DSNQFSALHIASQKVHVDKIKA 89
            L  AA  G V           E   +L          +      + +          + 
Sbjct: 15  GLATAAARGQV-----------ETVRQLLEAGADPNALNRFGRRPIQVMMMG-SAQVAEL 62

Query: 90  LLQ----VNPAWCFAGDLDG--SPLHLAAMKGRIDVLEELFRTRPLAASA----TMIWGE 139
           LL      N       D      P+H AA +G +D L  L       A A       WG 
Sbjct: 63  LLLHGAEPN-----CADPATLTRPVHDAAREGFLDTLVVL-----HRAGARLDVCDAWGR 112

Query: 140 TILHLCVKHNQLDALKFLLDN 160
             + L  +    D  ++L   
Sbjct: 113 LPVDLAEEQGHRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 52.4 bits (127), Expect = 9e-09
 Identities = 23/119 (19%), Positives = 38/119 (31%), Gaps = 24/119 (20%)

Query: 68  DSNQFSALHIASQKVHVDKIKALLQ----VNPAWCFAGDLDGS-PLHLAAMKGRIDVLEE 122
             +  + L  A+ +  V+ ++ LL+     N     A +  G  P+ +    G   V E 
Sbjct: 9   GGSSDAGLATAAARGQVETVRQLLEAGADPN-----ALNRFGRRPIQVMM-MGSAQVAEL 62

Query: 123 LFRTRPLAASA----TMIWGETI-LHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMT 176
           L     L   A          T  +H   +   LD L  L          +  D +G  
Sbjct: 63  L-----LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARL---DVCDAWGRL 113

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 56.6 bits (138), Expect = 5e-10
 Identities = 27/114 (23%), Positives = 41/114 (35%), Gaps = 13/114 (11%)

Query: 68  DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGS-PLHLAAMKGRIDVLEELFRT 126
           +S     L  A++   V+ +K L  V    C   +   S PLH AA   R+ V+E L   
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYL--- 61

Query: 127 RPLAASA----TMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMT 176
             L   A        G   LH    +   +  + L+ +       N  D +  T
Sbjct: 62  --LQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVV---NVADLWKFT 110

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 51.6 bits (125), Expect = 3e-08
 Identities = 44/180 (24%), Positives = 57/180 (31%), Gaps = 53/180 (29%)

Query: 5   LYEAALKGCEPTLLELLQQDQLIIGRVGVNC-----LSEFPLHAAALLGHVDFEGEIRRQ 59
           L EAA  G   T+       + +     VNC         PLH AA    V         
Sbjct: 12  LLEAAKAGDVETV-------KKLCTVQSVNCRDIEGRQSTPLHFAAGYNRV--------- 55

Query: 60  KPELAGEL----------DSNQFSALHIASQKVHVDKIKALLQ----VNPAWCFAGDLDG 105
              +   L          D      LH A    H +  + L++    VN       DL  
Sbjct: 56  --SVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVN-----VADLWK 108

Query: 106 S-PLHLAAMKGRIDVLEELFRTRPLAASATM----IWGETILHLCVKHNQLDALKFLLDN 160
             PLH AA KG+ ++ + L     L   A        G T L L VK    D    L  +
Sbjct: 109 FTPLHEAAAKGKYEICKLL-----LQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLLRGD 162

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 57.0 bits (138), Expect = 6e-10
 Identities = 25/195 (12%), Positives = 50/195 (25%), Gaps = 46/195 (23%)

Query: 5   LYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELA 64
           +  AA+ G     LEL ++       V  + +    L                    +++
Sbjct: 10  VSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARY-----------KIS 58

Query: 65  GEL----------DSNQFSALHIASQKVHVDK------IKALLQ----VNPAWCFAGDLD 104
             L               +      Q    D        K  L+    +      A    
Sbjct: 59  MFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT-----ALYKP 113

Query: 105 GS-PLHLAAMKGRIDVLEELFRTRPLAAS------ATMIWGETILHLCVKHNQLDALKFL 157
               +        +D  E +   + + +           WG T L    +  +  ALK +
Sbjct: 114 YKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMM 173

Query: 158 LDNMDDPQFLNAEDD 172
            D +      N +++
Sbjct: 174 EDYIKKY---NLKEN 185

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 24/188 (12%), Positives = 59/188 (31%), Gaps = 36/188 (19%)

Query: 34  NCLSEF-PLHAAALLGHVDFEGEIRRQKPELAGELDSNQ-----FSALHIASQKVHVDKI 87
           N +SE+  + AAA+LG  +   +      +   + +S       +  L   + +      
Sbjct: 2   NAMSEYRTVSAAAMLGTYE---DFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKIS 58

Query: 88  KALLQ----VNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAAS-----ATMIW 137
             L+     +      +   +G +        G  D+       +          A    
Sbjct: 59  MFLINKGADIK-----SRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKP 113

Query: 138 GETILHLCVKHNQLDAL------KFLLDNMD-DPQFLNAEDDYGMTITQLAVAVKLCFQN 190
            + ++   + +  +D        K +          L  +D +G+T   L    +     
Sbjct: 114 YKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ---LLIKDKWGLTA--LEFVKRCQKPI 168

Query: 191 LVELVEEY 198
            ++++E+Y
Sbjct: 169 ALKMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 48.1 bits (115), Expect = 6e-07
 Identities = 17/182 (9%), Positives = 53/182 (29%), Gaps = 34/182 (18%)

Query: 70  NQFSALHIASQKVHVDKIKALLQ--VNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRT 126
           +++  +  A+     +    L +                  L     + R  +   L   
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFL--- 61

Query: 127 RPLAA----SATMIWGETILHLCVKHNQLDA------LKFLLDN-MDDPQFLNAEDDYGM 175
             +       +    G T+     +    D        K  L+   D    + A      
Sbjct: 62  --INKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGAD----ITALYKPYK 115

Query: 176 TITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQS 235
            +  +   +   F +  E++          + + + +++ +++   +  G  AL+ + + 
Sbjct: 116 IV--VFKNIFNYFVDENEMIP---------LYKLIFSQSGLQLLIKDKWGLTALEFVKRC 164

Query: 236 KR 237
           ++
Sbjct: 165 QK 166

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 55.1 bits (134), Expect = 6e-10
 Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 22/118 (18%)

Query: 68  DSNQFSALHIASQKVHVDKIKALLQ----VNPAWCFAGDLDGS-PLHLAAMKGRIDVLEE 122
             +  + LH A++  H +++K LL     VN     A   DG+ PLHLAA  G  ++++ 
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVN-----ARSKDGNTPLHLAAKNGHAEIVKL 60

Query: 123 LFRTRPLAASA----TMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMT 176
           L     LA  A        G T  HL  K+   + +K L     D    NA       
Sbjct: 61  L-----LAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADV---NARSWGSSH 110

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 57.9 bits (141), Expect = 7e-10
 Identities = 19/155 (12%), Positives = 40/155 (25%), Gaps = 43/155 (27%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGEL--------DSNQFSALHIASQKVHVDKIKALL 91
             + A    +V            L   L               LH A+       +K LL
Sbjct: 34  ASYYAIADNNV-----------RLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILL 82

Query: 92  Q----VNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASA-----TMIWGETI 141
                 +       D  G + L+ A   G +  ++       +  +           +T 
Sbjct: 83  FSGLDDS-----QFDDKGNTALYYAVDSGNMQTVKLF-----VKKNWRLMFYGKTGWKTS 132

Query: 142 LHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMT 176
            +  V  N +  + + L  +        +    ++
Sbjct: 133 FYHAVMLNDVSIVSYFLSEIPS----TFDLAILLS 163

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 56.0 bits (136), Expect = 3e-09
 Identities = 20/149 (13%), Positives = 40/149 (26%), Gaps = 36/149 (24%)

Query: 40  PLHAAALLGHVDF------EGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALL-- 91
             + A +L  V        E               +   S +HI  +  HVD +  LL  
Sbjct: 132 SFYHAVMLNDVSIVSYFLSEIPSTFD--------LAILLSCIHITIKNGHVDMMILLLDY 183

Query: 92  --QVNPAWCFAGDLDG--SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVK 147
               N       +       + LA     I++L+ L                +     V 
Sbjct: 184 MTSTN-----TNNSLLFIPDIKLAIDNKDIEMLQAL-----FKYDIN---IYSANLENVL 230

Query: 148 HNQLDALKFLLDNMDDPQFLNAEDDYGMT 176
            +  +  K +++   +     ++      
Sbjct: 231 LDDAEIAKMIIEKHVEY---KSDSYTKDL 256

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 55.6 bits (135), Expect = 4e-09
 Identities = 27/136 (19%), Positives = 42/136 (30%), Gaps = 25/136 (18%)

Query: 68  DSNQFSALHIASQKVHVDKIKALLQ----VNPAWCFAGDLDG-SPLHLAAMKGRIDVLEE 122
           D +  SA + A    +V  +  LL      N        L+   PLH AA      +++ 
Sbjct: 28  DVHGHSASYYAIADNNVRLVCTLLNAGALKN-------LLENEFPLHQAATLEDTKIVKI 80

Query: 123 LFRTRPLAASATM----IWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTIT 178
           L     L +          G T L+  V    +  +K  +               G   T
Sbjct: 81  L-----LFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL---MFYGKTGWK-T 131

Query: 179 QLAVAVKLCFQNLVEL 194
               AV L   ++V  
Sbjct: 132 SFYHAVMLNDVSIVSY 147

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 47.9 bits (115), Expect = 1e-06
 Identities = 16/138 (11%), Positives = 36/138 (26%), Gaps = 35/138 (25%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGEL----------DSNQFS-ALHIASQKVHVDKIK 88
            L+ A   G++           +                   +  + + A     V  + 
Sbjct: 98  ALYYAVDSGNM-----------QTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVS 146

Query: 89  ALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASA----TMIWGET-IL 142
             L   P+          S +H+    G +D++  L     L                 +
Sbjct: 147 YFLSEIPS--TFDLAILLSCIHITIKNGHVDMMILL-----LDYMTSTNTNNSLLFIPDI 199

Query: 143 HLCVKHNQLDALKFLLDN 160
            L + +  ++ L+ L   
Sbjct: 200 KLAIDNKDIEMLQALFKY 217

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 56.2 bits (137), Expect = 9e-10
 Identities = 28/151 (18%), Positives = 49/151 (32%), Gaps = 35/151 (23%)

Query: 38  EFPLHAAALLGH---VDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALL--- 91
           E              +DF    R          DS   + L +A      + I  L+   
Sbjct: 9   EIVEKIKDEKSINQNLDFLRNYR----------DSYNRTPLMVACMLGMENAIDKLVENF 58

Query: 92  -QVNPAWCFAGDLDGS-PLHLAAMKGRIDVLEELFRTRPLAASA----TMIWGETILHLC 145
            ++        D++GS  L  A    R+ + E+L     L+  +        G+T L   
Sbjct: 59  DKLE-----DKDIEGSTALIWAVKNNRLGIAEKL-----LSKGSNVNTKDFSGKTPLMWS 108

Query: 146 VKHNQLDALKFLLDNMDDPQFLNAEDDYGMT 176
           +     +   FLL++  +    N  +  G T
Sbjct: 109 IIFGYSEMSYFLLEHGANV---NDRNLEGET 136

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 52.8 bits (128), Expect = 2e-08
 Identities = 34/157 (21%), Positives = 54/157 (34%), Gaps = 45/157 (28%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGEL-----------DSNQFSALHIASQKVHVDKIK 88
           PL  A +LG                 +            D    +AL  A +   +   +
Sbjct: 38  PLMVACMLGM-----------ENAI-DKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAE 85

Query: 89  ALLQ----VNPAWCFAGDLDGS-PLHLAAMKGRIDVLEELFRTRPLAASATM----IWGE 139
            LL     VN       D  G  PL  + + G  ++   L     L   A +    + GE
Sbjct: 86  KLLSKGSNVN-----TKDFSGKTPLMWSIIFGYSEMSYFL-----LEHGANVNDRNLEGE 135

Query: 140 TILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMT 176
           T L +  K+ + + +K LL+   D    +A D  G+T
Sbjct: 136 TPLIVASKYGRSEIVKKLLELGADI---SARDLTGLT 169

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 48.2 bits (116), Expect = 5e-07
 Identities = 26/118 (22%), Positives = 40/118 (33%), Gaps = 24/118 (20%)

Query: 66  ELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELF 124
            +D N      I  +K     +  L           D    +PL +A M G  + +++L 
Sbjct: 3   HMDKNGEIVEKIKDEKSINQNLDFLR-------NYRDSYNRTPLMVACMLGMENAIDKLV 55

Query: 125 RTRPLAAS------ATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMT 176
                            I G T L   VK+N+L   + LL    +    N +D  G T
Sbjct: 56  -------ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV---NTKDFSGKT 103

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 47.4 bits (114), Expect = 1e-06
 Identities = 23/139 (16%), Positives = 47/139 (33%), Gaps = 40/139 (28%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGEL----------DSNQFSALHIASQKVHVDKIKA 89
            L  A     +            +A +L          D +  + L  +    + +    
Sbjct: 71  ALIWAVKNNRL-----------GIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYF 119

Query: 90  LLQ----VNPAWCFAGDLDGS-PLHLAAMKGRIDVLEELFRTRPLAASATM----IWGET 140
           LL+    VN       +L+G  PL +A+  GR +++++L     L   A +    + G T
Sbjct: 120 LLEHGANVN-----DRNLEGETPLIVASKYGRSEIVKKL-----LELGADISARDLTGLT 169

Query: 141 ILHLCVKHNQLDALKFLLD 159
                    + + +K   +
Sbjct: 170 AEASARIFGRQEVIKIFTE 188

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 57.5 bits (140), Expect = 9e-10
 Identities = 42/232 (18%), Positives = 68/232 (29%), Gaps = 65/232 (28%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGEL-----------DSNQFSALHIASQKVHVDKIK 88
            L  A                 +L  +L           +   ++ LH A Q    D ++
Sbjct: 8   LLIKAVQNED-----------VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVE 56

Query: 89  ALLQ----VNPAWCFAGDLDGS-PLHLAAMKGRIDVLEELFRTRPLAASA----TMIWGE 139
            LL+               +G+ P  LAA+ G + +L+       L+  A       +G 
Sbjct: 57  LLLRHGADPV-----LRKKNGATPFLLAAIAGSVKLLKLF-----LSKGADVNECDFYGF 106

Query: 140 TILHLCVKHNQLDALKFLLDN-------MDDPQFLNAEDDYGMTITQLAVAVKLCFQNLV 192
           T       + ++ ALKFL              +        G T    A       +  V
Sbjct: 107 TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA-----AEKGHV 161

Query: 193 ELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDKKDWEI 244
           E+++             L      +VNA +  G  AL     S  D     I
Sbjct: 162 EVLK------------ILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAI 201

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 52.1 bits (126), Expect = 7e-08
 Identities = 32/114 (28%), Positives = 40/114 (35%), Gaps = 23/114 (20%)

Query: 73  SALHIASQKVHVDKIKALLQ----VNPAWCFAGDLDGS--PLHLAAMKGRIDVLEELFRT 126
             L  A Q   VD ++ LL+    VN       + +G   PLH A    R D++E L   
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVN-----FQEEEGGWTPLHNAVQMSREDIVELL--- 58

Query: 127 RPLAASA----TMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMT 176
             L   A        G T   L      +  LK  L    D    N  D YG T
Sbjct: 59  --LRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV---NECDFYGFT 107

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 50.5 bits (122), Expect = 2e-07
 Identities = 38/189 (20%), Positives = 57/189 (30%), Gaps = 55/189 (29%)

Query: 5   LYEAALKGCEPTLLELL--------QQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEI 56
             EAA+ G    L + L         + +    +  +       L  AA  GHV      
Sbjct: 109 FMEAAVYGKVKAL-KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV------ 161

Query: 57  RRQKPELAGEL-----------DSNQFSALHIASQKVHVDKIKA----LLQ----VNPAW 97
                E+   L           D+   +AL  A        ++A    LL     VN   
Sbjct: 162 -----EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN--- 213

Query: 98  CFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAAS-----ATMIWGETILHLCVKHNQL 151
                  G +PL LA  K  + +++ L     L         T   G+T L L V+    
Sbjct: 214 --VRGERGKTPLILAVEKKHLGLVQRL-----LEQEHIEINDTDSDGKTALLLAVELKLK 266

Query: 152 DALKFLLDN 160
              + L   
Sbjct: 267 KIAELLCKR 275

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 43.6 bits (104), Expect = 4e-05
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 14/82 (17%)

Query: 101 GDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASA-----TMIWGETILHLCVKHNQLDAL 154
             ++    L  A     +D++++L     L   A         G T LH  V+ ++ D +
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQL-----LEGGANVNFQEEEGGWTPLHNAVQMSREDIV 55

Query: 155 KFLLDNMDDPQFLNAEDDYGMT 176
           + LL +  DP         G T
Sbjct: 56  ELLLRHGADP---VLRKKNGAT 74

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 54.7 bits (133), Expect = 1e-09
 Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 40/140 (28%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGEL----------DSNQFSALHIASQKVHVDKIKA 89
           PLH AA  GH+           E+   L          D N  + LH+A++  H++ +K 
Sbjct: 5   PLHLAARNGHL-----------EVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 53

Query: 90  LLQ----VNPAWCFAGDLDGS-PLHLAAMKGRIDVLEELFRTRPLAASATM----IWGET 140
           LL+    VN     A D +G  PLHLAA  G ++V++ L     L A A +      G T
Sbjct: 54  LLEAGADVN-----AKDKNGRTPLHLAARNGHLEVVKLL-----LEAGADVNAKDKNGRT 103

Query: 141 ILHLCVKHNQLDALKFLLDN 160
            LHL  ++  L+ +K LL+ 
Sbjct: 104 PLHLAARNGHLEVVKLLLEA 123

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 53.2 bits (129), Expect = 6e-09
 Identities = 31/156 (19%), Positives = 50/156 (32%), Gaps = 43/156 (27%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGEL----------DSNQFSALHIASQKVHVDKIKA 89
            L +AA  G +           E    L          +    +AL +     + +  + 
Sbjct: 8   ELASAAARGDL-----------EQLTSLLQNNVNVNAQNGFGRTALQVMKLG-NPEIARR 55

Query: 90  LLQ----VNPAWCFAGDLDGS-PLHLAAMKGRIDVLEELFRTRPLAASATM----IWGET 140
           LL      +       D  G   +H AA  G +D L+ L     L   A +      G  
Sbjct: 56  LLLRGANPD-----LKDRTGFAVIHDAARAGFLDTLQTL-----LEFQADVNIEDNEGNL 105

Query: 141 ILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMT 176
            LHL  K   L  ++FL+ +      +   +  G T
Sbjct: 106 PLHLAAKEGHLRVVEFLVKH--TASNVGHRNHKGDT 139

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 52.8 bits (128), Expect = 1e-08
 Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 42/141 (29%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGEL----------DSNQFSALHIASQKVHVDKIKA 89
            L    L G+           PE+A  L          D   F+ +H A++   +D ++ 
Sbjct: 41  ALQVMKL-GN-----------PEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQT 88

Query: 90  LLQ----VNPAWCFAGDLDGS-PLHLAAMKGRIDVLEELFRTRPLAASATMI-----WGE 139
           LL+    VN       D +G+ PLHLAA +G + V+E L     +  +A+ +      G+
Sbjct: 89  LLEFQADVN-----IEDNEGNLPLHLAAKEGHLRVVEFL-----VKHTASNVGHRNHKGD 138

Query: 140 TILHLCVKHNQLDALKFLLDN 160
           T   L   + + + +  +  N
Sbjct: 139 TACDLARLYGRNEVVSLMQAN 159

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 52.4 bits (127), Expect = 8e-09
 Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 22/112 (19%)

Query: 74  ALHIASQKVHVDKIKALL----QVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRP 128
            L  A++    D+++ L+     VN     A D  G +PL+LA   G ++++E L     
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVN-----AKDEYGLTPLYLATAHGHLEIVEVL----- 66

Query: 129 LAASATM----IWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMT 176
           L   A +      G T LHL      L+  + LL +  D    NA+D +G T
Sbjct: 67  LKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADV---NAQDKFGKT 115

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 48.9 bits (118), Expect = 1e-07
 Identities = 30/139 (21%), Positives = 51/139 (36%), Gaps = 42/139 (30%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGEL-----------DSNQFSALHIASQKVHVDKIK 88
            L  AA  G             +    +           D    + L++A+   H++ ++
Sbjct: 17  KLLEAARAGQD-----------DEV-RILMANGADVNAKDEYGLTPLYLATAHGHLEIVE 64

Query: 89  ALLQ----VNPAWCFAGDLDGS-PLHLAAMKGRIDVLEELFRTRPLAASATM----IWGE 139
            LL+    VN     A D  G  PLHLAA  G +++ E L     L   A +     +G+
Sbjct: 65  VLLKNGADVN-----AVDAIGFTPLHLAAFIGHLEIAEVL-----LKHGADVNAQDKFGK 114

Query: 140 TILHLCVKHNQLDALKFLL 158
           T   + + +   D  + L 
Sbjct: 115 TAFDISIGNGNEDLAEILQ 133

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 50.0 bits (121), Expect = 2e-08
 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 19/96 (19%)

Query: 74  ALHIASQKVHVDKIKALL----QVNPAWCFAGDLDGS-PLHLAAMKGRIDVLEELFRTRP 128
            LH+A++  H++ +K LL     VN     A D +G  PLHLAA  G ++V++ L     
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVN-----AKDKNGRTPLHLAARNGHLEVVKLL----- 54

Query: 129 LAASA----TMIWGETILHLCVKHNQLDALKFLLDN 160
           L A A        G T LHL  ++  L+ +K LL+ 
Sbjct: 55  LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 48.1 bits (116), Expect = 1e-07
 Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 31/99 (31%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGEL----------DSNQFSALHIASQKVHVDKIKA 89
           PLH AA  GH+           E+   L          D N  + LH+A++  H++ +K 
Sbjct: 5   PLHLAARNGHL-----------EVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 53

Query: 90  LLQ----VNPAWCFAGDLDGS-PLHLAAMKGRIDVLEEL 123
           LL+    VN     A D +G  PLHLAA  G ++V++ L
Sbjct: 54  LLEAGADVN-----AKDKNGRTPLHLAARNGHLEVVKLL 87

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 33/215 (15%), Positives = 64/215 (29%), Gaps = 48/215 (22%)

Query: 5   LYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEF--PLHAAALLGHVDFEGEIRRQKPE 62
                  G  P+ +               + +SE+  P   AA         ++      
Sbjct: 19  YLIEWKDGHSPSWVPSSYI--------AADVVSEYETPWWTAARKADEQALSQL------ 64

Query: 63  LAG----ELDSNQFSALHIASQKVHVDKIKALLQ----VNPAWCFAGDLDG--SPLHLAA 112
           L       +D N  +AL   +       ++ L +    ++       D+ G  + LH+AA
Sbjct: 65  LEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD-----HRDMRGGLTALHMAA 119

Query: 113 MKGRIDVLEELFRTRPLAASA----TMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLN 168
              R +V+E L     +   A        G T L L  +  +       +        + 
Sbjct: 120 GYVRPEVVEAL-----VELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRR---IG 171

Query: 169 AEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKW 203
            E      +  +       +  + E+VE+    K 
Sbjct: 172 LEK-----VINVLEGQVFEYAEVDEIVEKRGKGKD 201

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 46.4 bits (111), Expect = 3e-06
 Identities = 29/196 (14%), Positives = 54/196 (27%), Gaps = 63/196 (32%)

Query: 5   LYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEF---PLHAAALLGHVDFEGEIRRQKP 61
            + AA K  E  L +LL+          V+ + E     L   A LG             
Sbjct: 49  WWTAARKADEQALSQLLE-------DRDVDAVDENGRTALLFVAGLGSD----------- 90

Query: 62  ELAGEL-----------DSNQFSALHIASQKVHVDKIKALLQ----VNPAWCFAGDLDG- 105
           +    L                +ALH+A+  V  + ++AL++    +        D  G 
Sbjct: 91  KCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE-----VEDERGL 145

Query: 106 SPLHLAAMKGRIDVLEELFR---------TRPLAASATMIW------------GETILHL 144
           + L LA    +        +            +       +            G+ + +L
Sbjct: 146 TALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYL 205

Query: 145 CVKHNQLDALKFLLDN 160
               +  D       +
Sbjct: 206 VRWKDGGDCEWVKGVH 221

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 42.6 bits (101), Expect = 6e-05
 Identities = 24/139 (17%), Positives = 39/139 (28%), Gaps = 46/139 (33%)

Query: 74  ALHIASQKVHVDKIKALLQVNPAWCFAGDLDG---SPLHLAAMKGRIDVLEELF------ 124
              I  +  H         +        D+     +P   AA K     L +L       
Sbjct: 18  EYLIEWKDGHSPSWVPSSYIAA------DVVSEYETPWWTAARKADEQALSQLLEDRDVD 71

Query: 125 ------RTRPL--AAS-------------------ATMIWGETILHLCVKHNQLDALKFL 157
                 RT  L   A                      M  G T LH+   + + + ++ L
Sbjct: 72  AVDENGRT-ALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEAL 130

Query: 158 LDNMDDPQFLNAEDDYGMT 176
           ++   D      ED+ G+T
Sbjct: 131 VELGADI---EVEDERGLT 146

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 52.3 bits (125), Expect = 8e-08
 Identities = 33/243 (13%), Positives = 78/243 (32%), Gaps = 27/243 (11%)

Query: 2   KSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLS---EFPLHAAALLGHVD-FEGEIR 57
           + + + AA+ GC  + L+ L    L+     V  +          AA  GH+        
Sbjct: 93  EVICFVAAITGCS-SALDTLCL--LLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCE 149

Query: 58  RQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFA--GDLDGSPLHLAAM-K 114
               E+   + +  + A  +A++  H+  +  L ++ P    A     +      AA+ +
Sbjct: 150 LAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGR 209

Query: 115 GRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAE---- 170
           G  +V+  L     + A A +          V       +  L +  D  +  N +    
Sbjct: 210 GHHNVINFLLDCPVMLAYAEI-HEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFD 268

Query: 171 ----DDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGF 226
                +       L   ++   + L++ +         +++     + +     +  +  
Sbjct: 269 LVTKSECLQGFYMLRNLIRRNDEVLLDDIR--------FLLSIPGIKALAPTATIPGDAN 320

Query: 227 MAL 229
             L
Sbjct: 321 ELL 323

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 48.0 bits (115), Expect = 9e-07
 Identities = 18/131 (13%), Positives = 40/131 (30%), Gaps = 23/131 (17%)

Query: 74  ALHIASQKVHVDKIKALLQ----VNPAWCFAGDLDGS-PLHLAAMKGRIDVLEELFRTRP 128
            L  A+    ++ ++  ++     +       + +G   LH A       +++ L     
Sbjct: 24  LLLDAALTGELEVVQQAVKEMNDPS-----QPNEEGITALHNAICGANYSIVDFL----- 73

Query: 129 LAASATM----IWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDD-YGMTITQLAVA 183
           + A A +      G T LH     N       L+ +      + A     G T  +    
Sbjct: 74  ITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAA---IFATTLSDGATAFEKCDP 130

Query: 184 VKLCFQNLVEL 194
            +  + +    
Sbjct: 131 YREGYADCATY 141

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 42.2 bits (100), Expect = 8e-05
 Identities = 37/194 (19%), Positives = 55/194 (28%), Gaps = 50/194 (25%)

Query: 5   LYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEF---PLHAAALLGHVDFEGEIRRQKP 61
           L +AAL G     LE++QQ   +      +  +E     LH A    +            
Sbjct: 25  LLDAALTGE----LEVVQQ--AVKEMNDPSQPNEEGITALHNAICGANYSIV-------- 70

Query: 62  EL---AG----ELDSNQFSALHIASQKVHVDKIKALLQ----VNPAWCFAGDL-DGS-PL 108
           +    AG      DS+ ++ LH A+         AL+Q    +      A  L DG+   
Sbjct: 71  DFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIF-----ATTLSDGATAF 125

Query: 109 HLAAM--KGRIDVLEELFRTRPLAASATM----IWGETILHLCVKHNQLDALKFLLDNMD 162
                  +G  D    L          +M          L         D L F      
Sbjct: 126 EKCDPYREGYADCATYL-----ADVEQSMGLMNSGAVYALWDYSAEF-GDELSFREGESV 179

Query: 163 DPQFLNAEDDYGMT 176
               +   D    T
Sbjct: 180 T---VLRRDGPEET 190

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 19/101 (18%)

Query: 66  ELDSNQFSALHIASQKVHVDKIKALL----QVNPAWCFAGDLDGS-PLHLAAMKGRIDVL 120
            + S+    L  A++    D+++ L+     V      A D +GS PLHLAA  G ++V+
Sbjct: 19  HMGSDLGKKLLEAARAGQDDEVRILMANGADVA-----AKDKNGSTPLHLAARNGHLEVV 73

Query: 121 EELFRTRPLAASA----TMIWGETILHLCVKHNQLDALKFL 157
           + L     L A A       +G+T   + + +   D  + L
Sbjct: 74  KLL-----LEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 38.3 bits (90), Expect = 4e-04
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 17/92 (18%)

Query: 40  PLHAAALLGHVD------FEG-EIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQ 92
            L  AA  G  D        G ++  +        D N  + LH+A++  H++ +K LL+
Sbjct: 27  KLLEAARAGQDDEVRILMANGADVAAK--------DKNGSTPLHLAARNGHLEVVKLLLE 78

Query: 93  VNPAWCFAGDLDG-SPLHLAAMKGRIDVLEEL 123
              A   A D  G +   ++   G  D+ E L
Sbjct: 79  AG-ADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 46.6 bits (110), Expect = 5e-06
 Identities = 30/181 (16%), Positives = 56/181 (30%), Gaps = 39/181 (21%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGEL----------DSNQFSALHIASQKVH---VDK 86
           PLH    + ++           EL   L          D+   S L  A + V+      
Sbjct: 134 PLHWLTSIANL-----------ELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGT 182

Query: 87  IKALLQVNPAWCFAGDLDG-SPLHLAAMKGRID------------VLEELFRTRPLAASA 133
            +ALL          D    + LH   +   +             ++  + + +     +
Sbjct: 183 FEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQS 242

Query: 134 TMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVE 193
                E+  +      +   L+ L         LNA+D  G T   L +A +L   ++V+
Sbjct: 243 GTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTC--LNIAARLGNISIVD 300

Query: 194 L 194
            
Sbjct: 301 A 301

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 42.7 bits (100), Expect = 9e-05
 Identities = 23/163 (14%), Positives = 42/163 (25%), Gaps = 25/163 (15%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELAG---ELDSNQFSALHIASQKVHVDK---------- 86
            L  A    +    G        L       DS   + LH       +            
Sbjct: 167 CLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLD 226

Query: 87  --IKALLQVNPAWCFAGDLDGSPLHLAAMKGRIDVLEELFRTRPLAASATMI-----WGE 139
             +  +++       +G  +           R D + E          A M+      G+
Sbjct: 227 ILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD--LKWIIANMLNAQDSNGD 284

Query: 140 TILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV 182
           T L++  +   +  +  LLD   DP      +  G+       
Sbjct: 285 TCLNIAARLGNISIVDALLDYGADP---FIANKSGLRPVDFGA 324

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 40/267 (14%), Positives = 82/267 (30%), Gaps = 75/267 (28%)

Query: 75  LHIASQKVHVDKIKAL----LQVNPAWCFAGDLDGS-PLHLAAMKGRIDVLEELFRTRPL 129
           L++ +       ++ L     Q++P W    D   +  L + +++     L  L +++P 
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE---LRRLLKSKPY 243

Query: 130 AASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYG----MTITQLAVAVK 185
                         L V           L N+ + +  NA +       +T     V   
Sbjct: 244 ENC-----------LLV-----------LLNVQNAKAWNAFN-LSCKILLTTRFKQVTDF 280

Query: 186 LCFQNLVELVEEYCHSKWGY--------VIRFLTTRT------MIEVNALNANGFMALDT 231
           L       +  +  H             ++++L  R       ++  N         L  
Sbjct: 281 LSAATTTHISLD--HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR------RLSI 332

Query: 232 LAQSKRDKKD-WEIEDWKMIGWKKMRNAL-MVVASLTAT--------MA-FQAGVNPPHG 280
           +A+S RD    W+  +WK +   K+   +   +  L           ++ F    + P  
Sbjct: 333 IAESIRDGLATWD--NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390

Query: 281 P----WQDTSFSSSQGHATA-HRYTCI 302
                W D   S         H+Y+ +
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLV 417

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 7/95 (7%)

Query: 106 SPLHLAAMKGRIDVLE--ELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDD 163
           + LHLA        L   +               G T LH C   +  + LK LL     
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230

Query: 164 PQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEY 198
            +  N   +     T L +A +L  ++  EL+ + 
Sbjct: 231 IEIANESGE-----TPLDIAKRLKHEHCEELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 39.2 bits (91), Expect = 9e-04
 Identities = 18/89 (20%), Positives = 28/89 (31%), Gaps = 5/89 (5%)

Query: 40  PLHAAALLGHVDFEG--EIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAW 97
            LH A            +   Q      +      +ALH      + + +K LL+   A 
Sbjct: 172 ALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR-GKAS 230

Query: 98  CFAGDLDG-SPLHLAAMKGRIDVLEELFR 125
               +  G +PL +A         EEL  
Sbjct: 231 IEIANESGETPLDIAKRLKHEH-CEELLT 258

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	323
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.98
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.97
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.97
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.97
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.96
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.96
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.95
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.95
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.94
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.94
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.94
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.94
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.94
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.93
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.93
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.92
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.92
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.92
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.92
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.92
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.91
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.9
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.89
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.88
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.88
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.88
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.88
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.88
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.87
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.86
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.85
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.78
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.77

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=9.5e-45  Score=311.80  Aligned_cols=220  Identities=19%  Similarity=0.140  Sum_probs=182.1

Q ss_pred             CCcHHHHHHHhC-------------CHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccc
Q 048253            1 MKSMLYEAALKG-------------CEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGEL   67 (323)
Q Consensus         1 g~t~L~~A~~~g-------------~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~   67 (323)
                      |+||||.|+..|             +.+++++|++.+++++..  .|..|.||||+|+..|+.+++++|+++++++ +.+
T Consensus        10 g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~--~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~   86 (253)
T 1yyh_A           10 GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQ--TDRTGETALHLAARYSRSDAAKRLLEASADA-NIQ   86 (253)
T ss_dssp             ------------------------------------------C--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCC
T ss_pred             CCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccc--cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCC
Confidence            789999999988             999999999999886543  3667999999999999999999999999998 899


Q ss_pred             CCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHH
Q 048253           68 DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCV  146 (323)
Q Consensus        68 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~  146 (323)
                      |..|+||||+|+..|+.+++++|++.++...+.++..| ||||+|+..|+.+++++|++ .+.+++..|..|+||||+|+
T Consensus        87 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~  165 (253)
T 1yyh_A           87 DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN-SHADVNAVDDLGKSALHWAA  165 (253)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHH-TTCCTTCBCTTSCBHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHH-cCCCCCCcCCCCCCHHHHHH
Confidence            99999999999999999999999999984338889999 99999999999999999999 88999999999999999999


Q ss_pred             hhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCC
Q 048253          147 KHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGF  226 (323)
Q Consensus       147 ~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~  226 (323)
                      ..|+.+++++|+++|++   ++.+|..|+||||+|+..|+.                 +++++|+++| ++++.+|..|+
T Consensus       166 ~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpL~~A~~~~~~-----------------~~v~~Ll~~g-a~~~~~d~~g~  224 (253)
T 1yyh_A          166 AVNNVDAAVVLLKNGAN---KDMQNNREETPLFLAAREGSY-----------------ETAKVLLDHF-ANRDITDHMDR  224 (253)
T ss_dssp             HHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCH-----------------HHHHHHHHTT-CCTTCCCTTCC
T ss_pred             HcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHCCCH-----------------HHHHHHHHcC-CCccccccCCC
Confidence            99999999999999999   899999999999999999999                 9999999999 89999999999


Q ss_pred             chhhhhhhccCCCchhhhHHHHh
Q 048253          227 MALDTLAQSKRDKKDWEIEDWKM  249 (323)
Q Consensus       227 tpl~~A~~~~~~~~~~~i~~~L~  249 (323)
                      ||+++|++    .++.+|+++|.
T Consensus       225 tpl~~A~~----~g~~~i~~~l~  243 (253)
T 1yyh_A          225 LPRDIAQE----RMHHDIVRLLD  243 (253)
T ss_dssp             CHHHHHHH----TTCHHHHHHHH
T ss_pred             CHHHHHHH----cCCHHHHHHHH
Confidence            99999999    99999999994

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=2.8e-43  Score=298.00  Aligned_cols=218  Identities=22%  Similarity=0.212  Sum_probs=206.9

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHh
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQ   80 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~   80 (323)
                      ++||||.|++.|+.+.+++|++.++...  ...|..|.||||+|+..|+.+++++|++++.++ +.+|..|+||||+|+.
T Consensus         6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~--~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   82 (231)
T 3aji_A            6 SNIMICNLAYSGKLDELKERILADKSLA--TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAAS   82 (231)
T ss_dssp             SSSHHHHHHHHTCHHHHHHHHHHCGGGG--GCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHH
T ss_pred             ccchHHHHHHhCCHHHHHHHHHhchhhh--hcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHHHH
Confidence            4799999999999999999999987643  335777999999999999999999999999987 8899999999999999


Q ss_pred             cCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHh
Q 048253           81 KVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLD  159 (323)
Q Consensus        81 ~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~  159 (323)
                      .|+.+++++|+++|+++ +.++..| ||||+|+..|+.+++++|++ .+.+++..+..|.||||+|+..|+.+++++|++
T Consensus        83 ~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  160 (231)
T 3aji_A           83 AGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLE-GGANPDAKDHYDATAMHRAAAKGNLKMVHILLF  160 (231)
T ss_dssp             HTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence            99999999999999998 7889999 99999999999999999999 889999999999999999999999999999999


Q ss_pred             CCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhhccCCC
Q 048253          160 NMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDK  239 (323)
Q Consensus       160 ~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~~~~~~  239 (323)
                      +|++   ++.+|..|+||||+|+..++.                 +++++|+++| ++++.+|..|+||+++|.+    .
T Consensus       161 ~g~~---~~~~~~~g~t~L~~A~~~~~~-----------------~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~----~  215 (231)
T 3aji_A          161 YKAS---TNIQDTEGNTPLHLACDEERV-----------------EEAKFLVTQG-ASIYIENKEEKTPLQVAKG----G  215 (231)
T ss_dssp             TTCC---SCCCCTTSCCHHHHHHHTTCH-----------------HHHHHHHHTT-CCSCCCCTTSCCHHHHSCH----H
T ss_pred             cCCC---ccccCCCCCCHHHHHHHCCCH-----------------HHHHHHHHCC-CCCCCCCCCCCCHHHHHHh----h
Confidence            9998   899999999999999999999                 9999999998 8999999999999999999    8


Q ss_pred             chhhhHHHH
Q 048253          240 KDWEIEDWK  248 (323)
Q Consensus       240 ~~~~i~~~L  248 (323)
                      ++.+++++|
T Consensus       216 ~~~~i~~lL  224 (231)
T 3aji_A          216 LGLILKRLA  224 (231)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999998

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.9e-43  Score=300.65  Aligned_cols=217  Identities=21%  Similarity=0.193  Sum_probs=202.9

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhc----cCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHH
Q 048253            1 MKSMLYEAALKGCEPTLLELLQ----QDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALH   76 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~   76 (323)
                      |+||||.|+..|+.+++++|++    .+.+++   ..|..|.||||+|+..|+.+++++|+++++++ +.+|..|+||||
T Consensus         9 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~---~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~   84 (241)
T 1k1a_A            9 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD---IYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAH   84 (241)
T ss_dssp             TCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSC---CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---cccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHH
Confidence            7899999999999999999997    555543   34777999999999999999999999999998 889999999999


Q ss_pred             HHHhcCCHHHHHHHHhcCC----ccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccc-cccccHHHHHHhhCc
Q 048253           77 IASQKVHVDKIKALLQVNP----AWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATM-IWGETILHLCVKHNQ  150 (323)
Q Consensus        77 ~A~~~g~~~~v~~Ll~~~~----~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~  150 (323)
                      +|+..|+.+++++|++.++    ++ ...+..| ||||+|+..|+.+++++|++ .+.+++..+ ..|.||||+|+..|+
T Consensus        85 ~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~g~t~L~~A~~~~~  162 (241)
T 1k1a_A           85 LACEHRSPTCLRALLDSAAPGTLDL-EARNYDGLTALHVAVNTECQETVQLLLE-RGADIDAVDIKSGRSPLIHAVENNS  162 (241)
T ss_dssp             HHHHTTCHHHHHHHHHHSCTTSCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             HHHHcCCHHHHHHHHHcCCCccccc-cccCcCCCcHHHHHHHcCCHHHHHHHHH-cCCCcccccccCCCcHHHHHHHcCC
Confidence            9999999999999999987    55 7788889 99999999999999999999 788888888 789999999999999


Q ss_pred             hhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhh
Q 048253          151 LDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALD  230 (323)
Q Consensus       151 ~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~  230 (323)
                      .+++++|+++|++   ++.+|..|+||||+|+..++.                 +++++|+++| ++++.+|..|.||++
T Consensus       163 ~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~-----------------~~v~~Ll~~g-a~~~~~~~~g~tpl~  221 (241)
T 1k1a_A          163 LSMVQLLLQHGAN---VNAQMYSGSSALHSASGRGLL-----------------PLVRTLVRSG-ADSSLKNCHNDTPLM  221 (241)
T ss_dssp             HHHHHHHHHTTCC---TTCBCTTSCBHHHHHHHHTCH-----------------HHHHHHHHTT-CCTTCCCTTSCCTTT
T ss_pred             HHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCH-----------------HHHHHHHhcC-CCCCCcCCCCCCHHH
Confidence            9999999999999   999999999999999999999                 9999999998 899999999999999


Q ss_pred             hhhhccCCCchhhhHHHH
Q 048253          231 TLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       231 ~A~~~~~~~~~~~i~~~L  248 (323)
                      +|++    .+..++++.|
T Consensus       222 ~A~~----~~~~~i~~~l  235 (241)
T 1k1a_A          222 VARS----RRVIDILRGK  235 (241)
T ss_dssp             TCSS----HHHHHHHTC-
T ss_pred             HHHh----cCcHHHHhhh
Confidence            9999    9999999988

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=7e-43  Score=296.70  Aligned_cols=217  Identities=19%  Similarity=0.126  Sum_probs=202.5

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHh
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQ   80 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~   80 (323)
                      |+||||.|+..|+.+++++|++++.+++.   .+..|.||||+|+..|+.+++++|+++++++ +.++..|.||||+|+.
T Consensus        11 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   86 (237)
T 3b7b_A           11 KRSPLHAAAEAGHVDICHMLVQAGANIDT---CSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTCLHLAAK   86 (237)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCTTC---CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCCHHHHHHH
T ss_pred             CCCHHHHHHHcCcHHHHHHHHHcCCCcCc---cCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHH
Confidence            68999999999999999999999987644   3677999999999999999999999999987 8899999999999999


Q ss_pred             cCCHHHHHHHHhcC-CccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHH
Q 048253           81 KVHVDKIKALLQVN-PAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLL  158 (323)
Q Consensus        81 ~g~~~~v~~Ll~~~-~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll  158 (323)
                      .|+.+++++|++.+ .++ +..+..| ||||+|+..|+.+++++|++ .+.+++..+..|.||||+|+..|+.+++++|+
T Consensus        87 ~~~~~~~~~Ll~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  164 (237)
T 3b7b_A           87 KGHYEVVQYLLSNGQMDV-NCQDDGGWTPMIWATEYKHVDLVKLLLS-KGSDINIRDNEENICLHWAAFSGCVDIAEILL  164 (237)
T ss_dssp             TTCHHHHHHHHTTTCCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHH
T ss_pred             cCCHHHHHHHHhCCCCCc-ccCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCccCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            99999999999999 555 7888999 99999999999999999999 88999999999999999999999999999999


Q ss_pred             hCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhhccCC
Q 048253          159 DNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRD  238 (323)
Q Consensus       159 ~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~~~~~  238 (323)
                      ++|++   ++.+|..|.||||+|+..++.                 +++++|+++| ++++.+|.+|+||+|+|+.    
T Consensus       165 ~~g~~---~~~~~~~g~t~L~~A~~~~~~-----------------~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~~----  219 (237)
T 3b7b_A          165 AAKCD---LHAVNIHGDSPLHIAARENRY-----------------DCVVLFLSRD-SDVTLKNKEGETPLQCASL----  219 (237)
T ss_dssp             TTTCC---TTCCCTTCCCHHHHHHHTTCH-----------------HHHHHHHTTT-CCTTCCCTTSCCHHHHSCT----
T ss_pred             HcCCC---CCCcCCCCCCHHHHHHHhCCH-----------------hHHHHHHHcC-CCCCccCCCCCCHHHHHHH----
Confidence            99998   899999999999999999999                 9999999998 8999999999999999999    


Q ss_pred             CchhhhHHHH
Q 048253          239 KKDWEIEDWK  248 (323)
Q Consensus       239 ~~~~~i~~~L  248 (323)
                      .++.+...++
T Consensus       220 ~~~~~~~~~l  229 (237)
T 3b7b_A          220 NSQVWSALQM  229 (237)
T ss_dssp             TCHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7766444443

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.5e-43  Score=308.24  Aligned_cols=212  Identities=22%  Similarity=0.148  Sum_probs=184.7

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHh
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQ   80 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~   80 (323)
                      |+||||.|+..|+.++|++|++.+++.......|..|.||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+.
T Consensus         9 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~   87 (282)
T 1oy3_D            9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALHLACR   87 (282)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHHHHHTT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHH
Confidence            789999999999999999999998874444556788999999999999999999999999998 8999999999999999


Q ss_pred             cCCHHHHHHHHhcCCcc----------------------------------------------ccccCCCC-cHHHHHHH
Q 048253           81 KVHVDKIKALLQVNPAW----------------------------------------------CFAGDLDG-SPLHLAAM  113 (323)
Q Consensus        81 ~g~~~~v~~Ll~~~~~~----------------------------------------------~~~~~~~g-t~L~~A~~  113 (323)
                      .|+.+++++|++++++.                                              .+.++..| ||||+|+.
T Consensus        88 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  167 (282)
T 1oy3_D           88 VRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVI  167 (282)
T ss_dssp             TTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHH
T ss_pred             cCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHH
Confidence            99999999999987651                                              15667889 99999999


Q ss_pred             hCCHHHHHHHHHhCCCcccccccc-cccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHH
Q 048253          114 KGRIDVLEELFRTRPLAASATMIW-GETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLV  192 (323)
Q Consensus       114 ~g~~~~v~~Ll~~~~~~~~~~~~~-g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~  192 (323)
                      .|+.+++++|++ .+.+++..+.. |+||||+|+..|+.+++++|+++|++   ++.+|..|+||||+|+..++.     
T Consensus       168 ~g~~~~v~~Ll~-~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad---~~~~d~~g~tpL~~A~~~~~~-----  238 (282)
T 1oy3_D          168 HKDAEMVRLLRD-AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD---PTARMYGGRTPLGSALLRPNP-----  238 (282)
T ss_dssp             TTCHHHHHHHHH-HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHTSSCH-----
T ss_pred             cCCHHHHHHHHH-cCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCC---CcccccCCCCHHHHHHHcCCc-----
Confidence            999999999999 78888888854 99999999999999999999999999   999999999999999999999     


Q ss_pred             HHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhhc
Q 048253          193 ELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQS  235 (323)
Q Consensus       193 ~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~~  235 (323)
                                  +++++|+++| ++++.+|..|.||+++|...
T Consensus       239 ------------~~v~~Ll~~g-a~~~~~~~~g~tpl~~a~~~  268 (282)
T 1oy3_D          239 ------------ILARLLRAHG-APEPEDGGDKLSPCSSSGSD  268 (282)
T ss_dssp             ------------HHHHHHHHTT-CCCCCCC-------------
T ss_pred             ------------HHHHHHHHcC-CCcCcCCCcccccccccCCc
Confidence                        9999999999 99999999999999999883

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=8e-43  Score=294.47  Aligned_cols=209  Identities=19%  Similarity=0.156  Sum_probs=194.2

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhC--CCcccccCCCCCcHHHHH
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQK--PELAGELDSNQFSALHIA   78 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~--~~~~~~~~~~g~tpL~~A   78 (323)
                      |+||||.|++.|+.+++++|++.+++....  .|..|.||||+|+..|+.+++++|++++  .++....+..|+||||+|
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A   79 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQ--KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA   79 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCcccccc--CCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHH
Confidence            789999999999999999999999876443  4677999999999999999999999999  565333889999999999


Q ss_pred             HhcCCHHHHHHHHhcC--CccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHH
Q 048253           79 SQKVHVDKIKALLQVN--PAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALK  155 (323)
Q Consensus        79 ~~~g~~~~v~~Ll~~~--~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~  155 (323)
                      +..|+.+++++|+++|  +++ +.++..| ||||+|+..|+.+++++|++ .+.+++..|..|+||||+|+..|+.++++
T Consensus        80 ~~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~  157 (228)
T 2dzn_A           80 CSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIE  157 (228)
T ss_dssp             HHHCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHcCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHH
Confidence            9999999999999998  777 7788889 99999999999999999999 78999999999999999999999999999


Q ss_pred             HHHhCC-CCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHh-hcccccccccccCCCchhhhhh
Q 048253          156 FLLDNM-DDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLT-TRTMIEVNALNANGFMALDTLA  233 (323)
Q Consensus       156 ~Ll~~g-~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll-~~g~~~~~~~d~~g~tpl~~A~  233 (323)
                      +|+++| ++   ++.+|..|+||||+|+..++.                 +++++|+ +.| ++++.+|.+|+||+++|.
T Consensus       158 ~Ll~~g~~~---~~~~d~~g~t~L~~A~~~~~~-----------------~~v~~Ll~~~g-a~~~~~~~~g~t~l~~A~  216 (228)
T 2dzn_A          158 LLCGLGKSA---VNWQDKQGWTPLFHALAEGHG-----------------DAAVLLVEKYG-AEYDLVDNKGAKAEDVAL  216 (228)
T ss_dssp             HHHTTTCCC---SCCCCTTSCCHHHHHHHTTCH-----------------HHHHHHHHHHC-CCSCCBCTTSCBGGGGCS
T ss_pred             HHHhcCccc---ccCcCCCCCCHHHHHHHcCCH-----------------HHHHHHHHhcC-CCCCccCCCCCcHHHHHH
Confidence            999999 77   899999999999999999999                 9999999 777 999999999999999998


Q ss_pred             h
Q 048253          234 Q  234 (323)
Q Consensus       234 ~  234 (323)
                      +
T Consensus       217 ~  217 (228)
T 2dzn_A          217 N  217 (228)
T ss_dssp             S
T ss_pred             H
Confidence            7

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.9e-42  Score=301.57  Aligned_cols=213  Identities=21%  Similarity=0.172  Sum_probs=198.1

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHh
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQ   80 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~   80 (323)
                      |+||||.|+..|+.+++++|++.+.+++..   |..|.||||+|+..|+.+++++|+++++++ +.+|..|+||||+|+.
T Consensus        59 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~---~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~  134 (285)
T 3d9h_A           59 DWSPMHEAAIHGHQLSLRNLISQGWAVNII---TADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACV  134 (285)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCSCEE---CTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCc---CCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHH
Confidence            689999999999999999999999886544   777999999999999999999999999998 8999999999999999


Q ss_pred             cCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHh
Q 048253           81 KVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLD  159 (323)
Q Consensus        81 ~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~  159 (323)
                      .|+.+++++|++.|+++ .. +..| ||||+|+..|+.+++++|++ .+.+++..|..|+||||+|+..|+.+++++|++
T Consensus       135 ~~~~~~v~~Ll~~g~~~-~~-~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~  211 (285)
T 3d9h_A          135 SGSWDCVNLLLQHGASV-QP-ESDLASPIHEAARRGHVECVNSLIA-YGGNIDHKISHLGTPLYLACENQQRACVKKLLE  211 (285)
T ss_dssp             HTCHHHHHHHHHTTCCS-SC-SCTTSCHHHHHHHHTCHHHHHHHHH-TTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHCCCCC-CC-CCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            99999999999999998 43 3458 99999999999999999999 889999999999999999999999999999999


Q ss_pred             CCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhhccCCC
Q 048253          160 NMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDK  239 (323)
Q Consensus       160 ~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~~~~~~  239 (323)
                      +|++   ++. |..|+||||+|+..++.                 +++++|+++| ++++.+|.+|+||+|+|+.    .
T Consensus       212 ~ga~---~~~-~~~g~t~L~~A~~~~~~-----------------~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~~----~  265 (285)
T 3d9h_A          212 SGAD---VNQ-GKGQDSPLHAVVRTASE-----------------ELACLLMDFG-ADTQAKNAEGKRPVELVPP----E  265 (285)
T ss_dssp             TTCC---TTC-CBTTBCHHHHHHHTTCH-----------------HHHHHHHHTT-CCTTCCCTTSCCGGGGSCT----T
T ss_pred             CCCC---CCC-CCCCCCHHHHHHHcCCH-----------------HHHHHHHHCC-CCCCCcCCCCCCHHHHhcC----c
Confidence            9998   774 88999999999999999                 9999999998 9999999999999999996    3


Q ss_pred             chhhhHHHH
Q 048253          240 KDWEIEDWK  248 (323)
Q Consensus       240 ~~~~i~~~L  248 (323)
                        .+++++|
T Consensus       266 --~~~~~~L  272 (285)
T 3d9h_A          266 --SPLAQLF  272 (285)
T ss_dssp             --SHHHHHH
T ss_pred             --cHHHHHH
Confidence              4677777

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=8.5e-42  Score=296.96  Aligned_cols=218  Identities=20%  Similarity=0.172  Sum_probs=163.1

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHh
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQ   80 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~   80 (323)
                      |+||||.|++.|+.++|++|++.+++++..  .+..|.||||+|+..|+.+++++|+++++++ +.+|..|.||||+|+.
T Consensus         5 g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   81 (285)
T 1wdy_A            5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQ--EEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAAI   81 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCCcccc--cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHH
Confidence            467888888888888888888887765433  2445788888888888888888888888776 7777888888888888


Q ss_pred             cCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCccccc----------ccccccHHHHHHhhC
Q 048253           81 KVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASAT----------MIWGETILHLCVKHN  149 (323)
Q Consensus        81 ~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~----------~~~g~t~Lh~A~~~g  149 (323)
                      .|+.+++++|+++|+++ +.++..| ||||+|+..|+.+++++|++ .+.+++..          +..|.||||+|+..|
T Consensus        82 ~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~  159 (285)
T 1wdy_A           82 AGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYK-RGANVNLRRKTKEDQERLRKGGATALMDAAEKG  159 (285)
T ss_dssp             HTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHT
T ss_pred             cCCHHHHHHHHHcCCCC-CccCcccCCHHHHHHHhCCHHHHHHHHH-hCCCcccccccHHHHHhhccCCCcHHHHHHHcC
Confidence            88888888888888877 6677777 88888888888888888887 56666655          666778888888888


Q ss_pred             chhHHHHHHhC-CCCCCCCcccccCCCcHHHHHHhhcc----hhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccC
Q 048253          150 QLDALKFLLDN-MDDPQFLNAEDDYGMTITQLAVAVKL----CFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNAN  224 (323)
Q Consensus       150 ~~~~v~~Ll~~-g~~~~~~~~~d~~g~t~Lh~A~~~~~----~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~  224 (323)
                      +.+++++|++. |++   ++.+|..|+||||+|+..++    .                 +++++|+++| ++++.+|..
T Consensus       160 ~~~~v~~Ll~~~~~~---~~~~~~~g~t~l~~a~~~~~~~~~~-----------------~i~~~Ll~~g-~~~~~~~~~  218 (285)
T 1wdy_A          160 HVEVLKILLDEMGAD---VNACDNMGRNALIHALLSSDDSDVE-----------------AITHLLLDHG-ADVNVRGER  218 (285)
T ss_dssp             CHHHHHHHHHTSCCC---TTCCCTTSCCHHHHHHHCSCTTTHH-----------------HHHHHHHHTT-CCSSCCCTT
T ss_pred             CHHHHHHHHHhcCCC---CCccCCCCCCHHHHHHHccccchHH-----------------HHHHHHHHcC-CCCCCcCCC
Confidence            88888888876 766   77777888888888887777    4                 5666666665 566666666


Q ss_pred             CCchhhhhhhccCCCchhhhHHHH
Q 048253          225 GFMALDTLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       225 g~tpl~~A~~~~~~~~~~~i~~~L  248 (323)
                      |.||||+|++    .++.+++++|
T Consensus       219 g~t~L~~A~~----~~~~~~v~~L  238 (285)
T 1wdy_A          219 GKTPLILAVE----KKHLGLVQRL  238 (285)
T ss_dssp             SCCHHHHHHH----TTCHHHHHHH
T ss_pred             CCcHHHHHHH----cCCHHHHHHH
Confidence            6666666666    5666666665

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=7e-43  Score=302.83  Aligned_cols=209  Identities=22%  Similarity=0.198  Sum_probs=169.9

Q ss_pred             CcHHHHHHHhCCHHHHHHHhccCccccc-----cccCCCCCCCHHHHHHHcCCH-HHHHHHHHhCCCcccccCCCCCcHH
Q 048253            2 KSMLYEAALKGCEPTLLELLQQDQLIIG-----RVGVNCLSEFPLHAAALLGHV-DFEGEIRRQKPELAGELDSNQFSAL   75 (323)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-----~~~~~~~g~t~Lh~A~~~g~~-~~v~~Ll~~~~~~~~~~~~~g~tpL   75 (323)
                      .++|+.||..|+.++|++|++.++....     ....+..|.||||.|+..++. .++++|++.|+++ +.+|.+|+|||
T Consensus        12 ~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~d~~G~TpL   90 (269)
T 4b93_B           12 VEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-NVTSQDGSSPL   90 (269)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCT-TCCCTTSCCHH
T ss_pred             hhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-CCcCCCCCCHH
Confidence            4799999999999999999998875321     223456789999999998876 4889999999998 99999999999


Q ss_pred             HHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHH
Q 048253           76 HIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDAL  154 (323)
Q Consensus        76 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v  154 (323)
                      |+|+..|+.+++++|++.|+++ ..++..| ||+|+|+..++.+++++|++ .+.+++.+|..|+||||+|+..|+.+++
T Consensus        91 h~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~n~~d~~g~TpL~~A~~~g~~~~v  168 (269)
T 4b93_B           91 HVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLD-SNAKPNKKDLSGNTPLIYACSGGHHELV  168 (269)
T ss_dssp             HHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTTCCCHHHHHHHTTCGGGH
T ss_pred             HHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCCCHHHH
Confidence            9999999999999999999999 8889999 99999999999999999999 8899999999999999999999999999


Q ss_pred             HHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhh
Q 048253          155 KFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQ  234 (323)
Q Consensus       155 ~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~  234 (323)
                      ++|+++|++   +|.+|..|+||||+|+..|+.                 ++|++|+++| +|++.+|.+|+||||+|++
T Consensus       169 ~~Ll~~gad---vn~~~~~g~t~Lh~A~~~g~~-----------------~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~~  227 (269)
T 4b93_B          169 ALLLQHGAS---INASNNKGNTALHEAVIEKHV-----------------FVVELLLLHG-ASVQVLNKRQRTAVDCAEQ  227 (269)
T ss_dssp             HHHHHTTCC---TTCBCTTSCBHHHHHHHTTCH-----------------HHHHHHHHTT-CCSCCCCTTSCCSGGGSCT
T ss_pred             HHHHHCCCC---CCccccCCCcHHHHHHHcCCH-----------------HHHHHHHHCC-CCCCCcCCCCCCHHHHHHh
Confidence            999999999   999999999999999999999                 9999999998 9999999999999999988

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=7.8e-42  Score=305.61  Aligned_cols=251  Identities=21%  Similarity=0.158  Sum_probs=213.3

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-----------------
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPEL-----------------   63 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-----------------   63 (323)
                      |+|+||.||+.|++++|++|+++|++++...  +..|.||||+|+..|+.++|++|+++|+++                 
T Consensus        25 ~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~--~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~  102 (337)
T 4g8k_A           25 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQE--EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIA  102 (337)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHTCCTTCCC--TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCCCccC--CCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhc
Confidence            4689999999999999999999999875442  234999999999999999999999998754                 


Q ss_pred             ---------------ccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCcccc---------ccCCCC-cHHHHHHHhCCHH
Q 048253           64 ---------------AGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCF---------AGDLDG-SPLHLAAMKGRID  118 (323)
Q Consensus        64 ---------------~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~---------~~~~~g-t~L~~A~~~g~~~  118 (323)
                                     ++.+|..|+||||+|+..|+.+++++|+++|+++..         ..+..| ||||+|+..|+.+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~  182 (337)
T 4g8k_A          103 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE  182 (337)
T ss_dssp             TCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHH
T ss_pred             ccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHH
Confidence                           256688899999999999999999999999987631         234568 9999999999999


Q ss_pred             HHHHHHHhCCCcccccccccccHHHHHHhhCc----hhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHH
Q 048253          119 VLEELFRTRPLAASATMIWGETILHLCVKHNQ----LDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVEL  194 (323)
Q Consensus       119 ~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~----~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~  194 (323)
                      ++++|+++.+++++..|..|+|++|.++..+.    .+++++|+++|++   +|.+|.+|+||||+|+..++.       
T Consensus       183 ~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad---~n~~d~~g~t~L~~a~~~~~~-------  252 (337)
T 4g8k_A          183 VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD---VNVRGERGKTPLILAVEKKHL-------  252 (337)
T ss_dssp             HHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCC---TTCCCGGGCCHHHHHHHTTCH-------
T ss_pred             HHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHHhhhh-------
Confidence            99999987899999999999999998886554    4588999999999   999999999999999999999       


Q ss_pred             HHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhhccCCCchhhhHHHHhhh--HHHHHHHHHHHHH----HHHH
Q 048253          195 VEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDKKDWEIEDWKMIG--WKKMRNALMVVAS----LTAT  268 (323)
Q Consensus       195 l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~~~~~~~~~~i~~~L~~~--~~~~~~~~~~~~~----~~~~  268 (323)
                                ++++.|++.++++++.+|.+|+||||+|++    .++.+++++|-..  +.+.+++++.++.    .+..
T Consensus       253 ----------~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~----~g~~~iv~~Ll~~GAd~n~~~~L~~A~~~~~~~iv~  318 (337)
T 4g8k_A          253 ----------GLVQRLLEQEHIEINDTDSDGKTALLLAVE----LKLKKIAELLCKRGASTDCGDLVMTARRNYDHSLVK  318 (337)
T ss_dssp             ----------HHHHHHHTSTTCCTTCBCTTSCBHHHHHHH----TTCHHHHHHHHTTSCSSTTCCHHHHHHHTTCHHHHH
T ss_pred             ----------HHHHHHHHhcCCcccCcCCCCCCHHHHHHH----cCCHHHHHHHHHCCCCCCCCCHHHHHHHcCCHHHHH
Confidence                      999999987669999999999999999999    9999999999433  2233456665552    5666


Q ss_pred             HHhhhccCC
Q 048253          269 MAFQAGVNP  277 (323)
Q Consensus       269 ~~~~a~~~~  277 (323)
                      ...+.|+.+
T Consensus       319 ~Ll~~GA~~  327 (337)
T 4g8k_A          319 VLLSHGAKE  327 (337)
T ss_dssp             HHHHTTCCC
T ss_pred             HHHHCcCCC
Confidence            677777543

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3e-41  Score=293.49  Aligned_cols=219  Identities=23%  Similarity=0.163  Sum_probs=206.1

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHh
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQ   80 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~   80 (323)
                      |+||||.|+..|+.+++++|++.+++++.   .|..|.||||+|+..|+.+++++|+++++++ +.+|..|+||||+|+.
T Consensus        39 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~  114 (285)
T 1wdy_A           39 GWTPLHNAVQMSREDIVELLLRHGADPVL---RKKNGATPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAV  114 (285)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTC---CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcc---cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCcccCCHHHHHHH
Confidence            67999999999999999999999988644   3777999999999999999999999999998 8899999999999999


Q ss_pred             cCCHHHHHHHHhcCCcccccc----------CCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhC
Q 048253           81 KVHVDKIKALLQVNPAWCFAG----------DLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHN  149 (323)
Q Consensus        81 ~g~~~~v~~Ll~~~~~~~~~~----------~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g  149 (323)
                      .|+.+++++|+++|+++ ...          +..| ||||+|+..|+.+++++|++..+.+++..|..|+||||+|+..+
T Consensus       115 ~~~~~~~~~Ll~~g~~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  193 (285)
T 1wdy_A          115 YGKVKALKFLYKRGANV-NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSS  193 (285)
T ss_dssp             TTCHHHHHHHHHTTCCT-TCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCS
T ss_pred             hCCHHHHHHHHHhCCCc-ccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcc
Confidence            99999999999999988 444          6778 99999999999999999999669999999999999999999999


Q ss_pred             c----hhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCC
Q 048253          150 Q----LDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANG  225 (323)
Q Consensus       150 ~----~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g  225 (323)
                      +    .+++++|+++|++   ++.+|..|+||||+|+..++.                 +++++|++..+++++.+|..|
T Consensus       194 ~~~~~~~i~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~-----------------~~v~~Ll~~~g~~~~~~~~~g  253 (285)
T 1wdy_A          194 DDSDVEAITHLLLDHGAD---VNVRGERGKTPLILAVEKKHL-----------------GLVQRLLEQEHIEINDTDSDG  253 (285)
T ss_dssp             CTTTHHHHHHHHHHTTCC---SSCCCTTSCCHHHHHHHTTCH-----------------HHHHHHHHSSSCCTTCCCTTS
T ss_pred             ccchHHHHHHHHHHcCCC---CCCcCCCCCcHHHHHHHcCCH-----------------HHHHHHHhccCCCccccCCCC
Confidence            9    8999999999999   999999999999999999999                 999999994449999999999


Q ss_pred             CchhhhhhhccCCCchhhhHHHH
Q 048253          226 FMALDTLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       226 ~tpl~~A~~~~~~~~~~~i~~~L  248 (323)
                      +||+|+|++    .++.+++++|
T Consensus       254 ~t~l~~A~~----~~~~~i~~~L  272 (285)
T 1wdy_A          254 KTALLLAVE----LKLKKIAELL  272 (285)
T ss_dssp             CCHHHHHHH----TTCHHHHHHH
T ss_pred             CcHHHHHHH----cCcHHHHHHH
Confidence            999999999    9999999998

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=4.8e-42  Score=301.57  Aligned_cols=218  Identities=21%  Similarity=0.207  Sum_probs=197.8

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHh
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQ   80 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~   80 (323)
                      |.||||.||..|+.++|++|++.+++++..   |..|.||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+.
T Consensus        40 ~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~---~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~  115 (299)
T 1s70_B           40 DGAVFLAACSSGDTEEVLRLLERGADINYA---NVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAAS  115 (299)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHCCCTTCB---CTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCCccc---CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHH
Confidence            358999999999999999999999887444   777999999999999999999999999998 8999999999999999


Q ss_pred             cCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccc--------------------------
Q 048253           81 KVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASA--------------------------  133 (323)
Q Consensus        81 ~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~--------------------------  133 (323)
                      .|+.+++++|+++|+++ +..+..| ||||+|+..++.+++++++...+.+++.                          
T Consensus       116 ~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  194 (299)
T 1s70_B          116 CGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVR  194 (299)
T ss_dssp             HTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred             cCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhh
Confidence            99999999999999998 8889999 9999999999999999888755555443                          


Q ss_pred             cccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhc
Q 048253          134 TMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTR  213 (323)
Q Consensus       134 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~  213 (323)
                      .+..|.||||+|+..|+.+++++|+++|++   ++.+|..|+||||+|+..|+.                 +++++|+++
T Consensus       195 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d---~~~~d~~g~tpL~~A~~~~~~-----------------~~v~~Ll~~  254 (299)
T 1s70_B          195 HAKSGGTALHVAAAKGYTEVLKLLIQARYD---VNIKDYDGWTPLHAAAHWGKE-----------------EACRILVEN  254 (299)
T ss_dssp             CTTTCCCHHHHHHHHTCHHHHHHHHTTTCC---TTCCCTTCCCHHHHHHHTTCH-----------------HHHHHHHHT
T ss_pred             hcCCCCCHHHHHHHCCcHHHHHHHHHcCCC---CCCcCCCCCcHHHHHHhcCCH-----------------HHHHHHHHc
Confidence            456799999999999999999999999999   999999999999999999999                 999999999


Q ss_pred             ccccccccccCCCchhhhhhhccCCCchhhhHHHH
Q 048253          214 TMIEVNALNANGFMALDTLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       214 g~~~~~~~d~~g~tpl~~A~~~~~~~~~~~i~~~L  248 (323)
                      | ++++.+|..|.||+++|.+    .....+.+++
T Consensus       255 g-ad~~~~d~~g~t~l~~A~~----~~~~~l~~l~  284 (299)
T 1s70_B          255 L-CDMEAVNKVGQTAFDVADE----DILGYLEELQ  284 (299)
T ss_dssp             T-CCTTCCCTTSCCTTTSCCS----GGGHHHHHHH
T ss_pred             C-CCCCCcCCCCCCHHHHHHH----HHHHHHHHHH
Confidence            8 9999999999999999987    4444444444

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=8.1e-42  Score=308.68  Aligned_cols=218  Identities=17%  Similarity=0.101  Sum_probs=201.5

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHh
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQ   80 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~   80 (323)
                      |+||||.||..|+.++|++|++.+.+++.   .|..|.||||+|+..|+.+++++|++++++.   .+.+|.||||+|+.
T Consensus        20 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~---~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~g~t~L~~A~~   93 (364)
T 3ljn_A           20 NMEKIHVAARKGQTDEVRRLIETGVSPTI---QNRFGCTALHLACKFGCVDTAKYLASVGEVH---SLWHGQKPIHLAVM   93 (364)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCTTC---CCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC---CCBTTBCHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCccc---cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---cccCCCCHHHHHHH
Confidence            57999999999999999999999987644   4778999999999999999999999999965   34689999999999


Q ss_pred             cCCHHHHHHHHhc----CCccccc-----------------cCCCC-cHHHHHHHhC--CHHHHHHHHHhCCCccccccc
Q 048253           81 KVHVDKIKALLQV----NPAWCFA-----------------GDLDG-SPLHLAAMKG--RIDVLEELFRTRPLAASATMI  136 (323)
Q Consensus        81 ~g~~~~v~~Ll~~----~~~~~~~-----------------~~~~g-t~L~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~  136 (323)
                      .|+.+++++|++.    |.++ ..                 ++..| ||||+|+..|  +.+++++|++ .+++++..|.
T Consensus        94 ~g~~~~v~~Ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~-~ga~~~~~d~  171 (364)
T 3ljn_A           94 ANKTDLVVALVEGAKERGQMP-ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQ-LGASPTAKDK  171 (364)
T ss_dssp             TTCHHHHHHHHHHHHHHTCCH-HHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHH-HTCCTTCCCT
T ss_pred             cCCHHHHHHHHHhccccCCCH-HHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHH-cCCCCcccCC
Confidence            9999999999999    7776 44                 77789 9999999999  9999999999 6899999999


Q ss_pred             ccccHHHHHHhhCchhHHHHHHhCCCC--CCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcc
Q 048253          137 WGETILHLCVKHNQLDALKFLLDNMDD--PQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRT  214 (323)
Q Consensus       137 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~--~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g  214 (323)
                      .|+||||+|+..|+.+++++|+++|++  ...++.+|..|+||||+|+..|+.                 ++|++|+++|
T Consensus       172 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~-----------------~~v~~Ll~~g  234 (364)
T 3ljn_A          172 ADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWE-----------------DVAMRFVEMG  234 (364)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCH-----------------HHHHHHHTTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCH-----------------HHHHHHHHcC
Confidence            999999999999999999999998865  233788999999999999999999                 9999999998


Q ss_pred             cccccccccCCCchhhhhhhccCCCchhhhHHHH
Q 048253          215 MIEVNALNANGFMALDTLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       215 ~~~~~~~d~~g~tpl~~A~~~~~~~~~~~i~~~L  248 (323)
                       ++++.+|..|.||||+|++    .++.+++++|
T Consensus       235 -ad~~~~d~~g~tpL~~A~~----~g~~~~v~~L  263 (364)
T 3ljn_A          235 -IDVNMEDNEHTVPLYLSVR----AAMVLLTKEL  263 (364)
T ss_dssp             -CCTTCCCTTSCCHHHHHHH----TCCHHHHHHH
T ss_pred             -CCCCCCCCCCCCHHHHHHH----hChHHHHHHH
Confidence             9999999999999999999    9999999999

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=9.1e-41  Score=283.43  Aligned_cols=218  Identities=21%  Similarity=0.127  Sum_probs=204.7

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHh
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQ   80 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~   80 (323)
                      |.|+|+.|+..|+.+++++|++.+.+++.   .+..|.||||+|+..|+.+++++|+++++++....+..|.||||+|+.
T Consensus         9 ~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~   85 (240)
T 3eu9_A            9 STWDIVKATQYGIYERCRELVEAGYDVRQ---PDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATR   85 (240)
T ss_dssp             GGCCHHHHHHTTCHHHHHHHHHTTCCTTC---CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHH
T ss_pred             cchHHHHHHHcCChHHHHHHHHcCCCcCC---CCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHH
Confidence            57899999999999999999999987644   367799999999999999999999999999866667779999999999


Q ss_pred             cCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCc-hhHHHHHH
Q 048253           81 KVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQ-LDALKFLL  158 (323)
Q Consensus        81 ~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~-~~~v~~Ll  158 (323)
                      .|+.+++++|++.|+++ +.++..| ||||+|+..|+.+++++|++ .+.+++..+..|.||||+|+..++ .+++++|+
T Consensus        86 ~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~  163 (240)
T 3eu9_A           86 QGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIA-KGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLL  163 (240)
T ss_dssp             HTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHH
T ss_pred             cCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHh-cCCCccccCCCCCcHHHHHHHhCChHHHHHHHH
Confidence            99999999999999999 7788999 99999999999999999999 788999999999999999997776 89999999


Q ss_pred             hCCCCCCCCccccc-CCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhhccC
Q 048253          159 DNMDDPQFLNAEDD-YGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKR  237 (323)
Q Consensus       159 ~~g~~~~~~~~~d~-~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~~~~  237 (323)
                      +.|++   ++..+. .|+||||+|+..++.                 +++++|+++| ++++.+|..|.||+++|++   
T Consensus       164 ~~~~~---~~~~~~~~g~t~L~~A~~~~~~-----------------~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~---  219 (240)
T 3eu9_A          164 TFNVS---VNLGDKYHKNTALHWAVLAGNT-----------------TVISLLLEAG-ANVDAQNIKGESALDLAKQ---  219 (240)
T ss_dssp             HTTCC---TTCCCTTTCCCHHHHHHHHTCH-----------------HHHHHHHHHT-CCTTCBCTTSCBHHHHHHH---
T ss_pred             hcCCC---cchhhccCCCcHHHHHHHcCCH-----------------HHHHHHHHcC-CCCCCcCCCCCCHHHHHHH---
Confidence            99998   888887 899999999999999                 9999999998 9999999999999999999   


Q ss_pred             CCchhhhHHHH
Q 048253          238 DKKDWEIEDWK  248 (323)
Q Consensus       238 ~~~~~~i~~~L  248 (323)
                       .++.+++++|
T Consensus       220 -~~~~~~v~~L  229 (240)
T 3eu9_A          220 -RKNVWMINHL  229 (240)
T ss_dssp             -TTCHHHHHHH
T ss_pred             -cCcHHHHHHH
Confidence             9999999999

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.1e-40  Score=298.75  Aligned_cols=240  Identities=23%  Similarity=0.182  Sum_probs=186.2

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHh
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQ   80 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~   80 (323)
                      |+|+||.|++.|+.+.|+.|+.....  +....|..|.||||+|+..|+.+++++|+++++++ +.+|..|+||||+|+.
T Consensus        24 ~~~~L~~A~~~g~~~~v~~ll~~~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~  100 (351)
T 3utm_A           24 KKDELLEAARSGNEEKLMALLTPLNV--NCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACS  100 (351)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHCCTTTT--TCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred             cchhHHHHHHcCCHHHHHHHHHhcCC--CcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCcHHHHHHH
Confidence            35788888888888888888876332  12334667888888888888888888888888887 7888888888888888


Q ss_pred             cCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCccccc-------------------------
Q 048253           81 KVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASAT-------------------------  134 (323)
Q Consensus        81 ~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-------------------------  134 (323)
                      .|+.+++++|+++|+++ +..+..| ||||+|+..|+.+++++|++ .+.+++..                         
T Consensus       101 ~g~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~  178 (351)
T 3utm_A          101 YGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLLLS-HGADPTLVNCHGKSAVDMAPTPELRERLTYEFK  178 (351)
T ss_dssp             TTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCccccCCCCcchHHHhhhhhHHHHHhhhc
Confidence            88888888888888888 7777888 88888888888888888888 55555433                         


Q ss_pred             -----------------------------ccccccHHHHHHhh---CchhHHHHHHhCCCCCCCCcccccCCCcHHHHHH
Q 048253          135 -----------------------------MIWGETILHLCVKH---NQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV  182 (323)
Q Consensus       135 -----------------------------~~~g~t~Lh~A~~~---g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~  182 (323)
                                                   +..|.||||+|+..   +..+++++|+++|++   ++.+|.+|+||||+|+
T Consensus       179 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~  255 (351)
T 3utm_A          179 GHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN---VNEKNKDFMTPLHVAA  255 (351)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCC---TTCCCTTCCCHHHHHH
T ss_pred             ccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCC---cCCcCCCCCCHHHHHH
Confidence                                         34567888888888   557888888888887   8888888888888888


Q ss_pred             hhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhhccCCCchhhhHHHHhhh-------HHHH
Q 048253          183 AVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDKKDWEIEDWKMIG-------WKKM  255 (323)
Q Consensus       183 ~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~~~~~~~~~~i~~~L~~~-------~~~~  255 (323)
                      ..|+.                 +++++|+++| ++++.+|..|+||||+|++    .++.+++++|-..       +..+
T Consensus       256 ~~g~~-----------------~~v~~Ll~~g-a~~n~~d~~g~t~L~~A~~----~~~~~~v~~Ll~~gad~~~~~~~g  313 (351)
T 3utm_A          256 ERAHN-----------------DVMEVLHKHG-AKMNALDSLGQTALHRAAL----AGHLQTCRLLLSYGSDPSIISLQG  313 (351)
T ss_dssp             HTTCH-----------------HHHHHHHHTT-CCTTCCCTTSCCHHHHHHH----HTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             HcCCH-----------------HHHHHHHHCC-CCCCCcCCCCCCHHHHHHH----cCcHHHHHHHHHcCCCCCCcCCCC
Confidence            88888                 8888888887 7888888888888888888    7888888888332       3455


Q ss_pred             HHHHHHHHHHHHHHH
Q 048253          256 RNALMVVASLTATMA  270 (323)
Q Consensus       256 ~~~~~~~~~~~~~~~  270 (323)
                      .++++++...+....
T Consensus       314 ~tal~~a~~~~~~~l  328 (351)
T 3utm_A          314 FTAAQMGNEAVQQIL  328 (351)
T ss_dssp             CCHHHHSCHHHHHHH
T ss_pred             CChhhhhhHHHHHHH
Confidence            666666544444333

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.1e-40  Score=308.41  Aligned_cols=232  Identities=22%  Similarity=0.222  Sum_probs=190.3

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHh
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQ   80 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~   80 (323)
                      |.||||.|+..|+.+++++|++++.+++.   .+..|.||||+|+..|+.+++++|+++++++ +.++..|.||||+|+.
T Consensus       146 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~  221 (437)
T 1n11_A          146 GFTPLHVAAKYGKVRVAELLLERDAHPNA---AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAK  221 (437)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCTTC---CCSSCCCHHHHHHHTTCHHHHHHHGGGTCCS-CCCCTTCCCHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCCCC---CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHH
Confidence            57889999999999999999988877643   3666888888888888888888888888887 7778888888888888


Q ss_pred             cCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHh
Q 048253           81 KVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLD  159 (323)
Q Consensus        81 ~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~  159 (323)
                      .|+.+++++|++.|+++ +.++..| ||||+|+..|+.+++++|++ .+.+++..+..|+||||+|+..|+.+++++|++
T Consensus       222 ~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  299 (437)
T 1n11_A          222 QNQVEVARSLLQYGGSA-NAESVQGVTPLHLAAQEGHAEMVALLLS-KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK  299 (437)
T ss_dssp             TTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            88888888888888887 7777788 88888888888888888888 777888888888888888888888888888888


Q ss_pred             CCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhhccCCC
Q 048253          160 NMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDK  239 (323)
Q Consensus       160 ~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~~~~~~  239 (323)
                      +|++   ++.+|..|+||||+|+..|+.                 ++|++|+++| ++++.+|..|.||||+|++    .
T Consensus       300 ~g~~---~~~~~~~g~t~L~~A~~~g~~-----------------~~v~~Ll~~g-ad~n~~~~~g~t~L~~A~~----~  354 (437)
T 1n11_A          300 HGVM---VDATTRMGYTPLHVASHYGNI-----------------KLVKFLLQHQ-ADVNAKTKLGYSPLHQAAQ----Q  354 (437)
T ss_dssp             HTCC---TTCCCSSCCCHHHHHHHSSCS-----------------HHHHHHHHTT-CCTTCCCTTSCCHHHHHHH----T
T ss_pred             CCcc---CCCCCCCCCCHHHHHHHcCcH-----------------HHHHHHHhcC-CCCCCCCCCCCCHHHHHHH----C
Confidence            8887   888888888888888888888                 8888888877 7888888888888888888    7


Q ss_pred             chhhhHHHHhhh-------HHHHHHHHHHHH
Q 048253          240 KDWEIEDWKMIG-------WKKMRNALMVVA  263 (323)
Q Consensus       240 ~~~~i~~~L~~~-------~~~~~~~~~~~~  263 (323)
                      ++.+++++|-..       +..+.++++++.
T Consensus       355 g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~  385 (437)
T 1n11_A          355 GHTDIVTLLLKNGASPNEVSSDGTTPLAIAK  385 (437)
T ss_dssp             TCHHHHHHHHHTTCCSCCCCSSSCCHHHHHH
T ss_pred             ChHHHHHHHHHCcCCCCCCCCCCCCHHHHHH
Confidence            777888877332       244555665554

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.1e-41  Score=309.10  Aligned_cols=218  Identities=17%  Similarity=0.185  Sum_probs=201.3

Q ss_pred             CCcHHHHHHHhCCHHHHHHHh--------ccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCC
Q 048253            1 MKSMLYEAALKGCEPTLLELL--------QQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQF   72 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll--------~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~   72 (323)
                      |+||||.|+..|+.+++++|+        +.+.+++.   .|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.
T Consensus       125 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~---~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~  200 (373)
T 2fo1_E          125 NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNA---MDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSER  200 (373)
T ss_dssp             CCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTC---CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCC
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcC---CCCCCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCCCCC
Confidence            689999999999998888876        67877644   4778999999999999999999999999998 89999999


Q ss_pred             cHHHHHHhcCCHHHHHHHHhcC---CccccccCCCC-cHHHHHHHhC---CHHHHHHHHHhCCCcccc--------cccc
Q 048253           73 SALHIASQKVHVDKIKALLQVN---PAWCFAGDLDG-SPLHLAAMKG---RIDVLEELFRTRPLAASA--------TMIW  137 (323)
Q Consensus        73 tpL~~A~~~g~~~~v~~Ll~~~---~~~~~~~~~~g-t~L~~A~~~g---~~~~v~~Ll~~~~~~~~~--------~~~~  137 (323)
                      ||||+|+..|+.+++++|++.+   .++ +..+..| ||||+|+..+   +.+++++|++ .+.+++.        .|..
T Consensus       201 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~-~g~~~~~~~~~~~~~~d~~  278 (373)
T 2fo1_E          201 SALHQAAANRDFGMMVYMLNSTKLKGDI-EELDRNGMTALMIVAHNEGRDQVASAKLLVE-KGAKVDYDGAARKDSEKYK  278 (373)
T ss_dssp             CHHHHHHHTTCHHHHHHHTTSHHHHHTT-SCCCTTSCCHHHHHHHSCSTTHHHHHHHHHH-HTCCSSCCSGGGTSSSSCC
T ss_pred             CHHHHHHHCCCHHHHHHHHhcCccccCh-hhcCCCCCCHHHHHHHhCCcchHHHHHHHHH-CCCCcccccccccCccccc
Confidence            9999999999999999999988   677 7788999 9999999998   8999999999 5666664        5678


Q ss_pred             cccHHHHHHhhCchhHHHHHHhCC-CCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccc
Q 048253          138 GETILHLCVKHNQLDALKFLLDNM-DDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMI  216 (323)
Q Consensus       138 g~t~Lh~A~~~g~~~~v~~Ll~~g-~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~  216 (323)
                      |+||||+|+..|+.+++++|++++ ++   ++.+|.+|+||||+|+..|+.                 ++|++|+++| +
T Consensus       279 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~---~n~~d~~g~TpL~~A~~~g~~-----------------~iv~~Ll~~g-a  337 (373)
T 2fo1_E          279 GRTALHYAAQVSNMPIVKYLVGEKGSN---KDKQDEDGKTPIMLAAQEGRI-----------------EVVMYLIQQG-A  337 (373)
T ss_dssp             CCCTHHHHHSSCCHHHHHHHHHHSCCC---TTCCCTTCCCHHHHHHHHTCH-----------------HHHHHHHHTT-C
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHhcCCC---ccCcCCCCCCHHHHHHHcCCH-----------------HHHHHHHHcC-C
Confidence            999999999999999999999876 77   999999999999999999999                 9999999998 9


Q ss_pred             cccccccCCCchhhhhhhccCCCchhhhHHHHh
Q 048253          217 EVNALNANGFMALDTLAQSKRDKKDWEIEDWKM  249 (323)
Q Consensus       217 ~~~~~d~~g~tpl~~A~~~~~~~~~~~i~~~L~  249 (323)
                      +++.+|..|.||+++|+.    .++.+++++|.
T Consensus       338 d~~~~d~~g~t~l~~A~~----~g~~~iv~~Ll  366 (373)
T 2fo1_E          338 SVEAVDATDHTARQLAQA----NNHHNIVDIFD  366 (373)
T ss_dssp             CSSCCCSSSCCHHHHHHH----TTCHHHHHHHH
T ss_pred             CccCCCCCCCCHHHHHHH----cCCHHHHHHHH
Confidence            999999999999999999    99999999993

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3e-40  Score=305.40  Aligned_cols=247  Identities=25%  Similarity=0.251  Sum_probs=218.0

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHh
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQ   80 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~   80 (323)
                      |+||||.|+..|+.++|++|++++++++.   .+..|.||||+|+..|+.+++++|+++++++ +.++.+|+||||+|++
T Consensus        14 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~---~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   89 (437)
T 1n11_A           14 GLTPLHVASFMGHLPIVKNLLQRGASPNV---SNVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAAR   89 (437)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCSCC---SSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTSCCHHHHHHH
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHcCCCCCC---CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHH
Confidence            78999999999999999999999987643   3677999999999999999999999999998 8999999999999999


Q ss_pred             cCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHh
Q 048253           81 KVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLD  159 (323)
Q Consensus        81 ~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~  159 (323)
                      .|+.+++++|+++|+++ +..+..| ||||+|+..|+.+++++|++ .+.+.+..+..|.||||+|+..|+.+++++|++
T Consensus        90 ~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  167 (437)
T 1n11_A           90 IGHTNMVKLLLENNANP-NLATTAGHTPLHIAAREGHVETVLALLE-KEASQACMTKKGFTPLHVAAKYGKVRVAELLLE  167 (437)
T ss_dssp             HTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHh-CCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99999999999999998 7888899 99999999999999999999 778888889999999999999999999999999


Q ss_pred             CCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHh------------------hcchHHHHHHHhhccccccccc
Q 048253          160 NMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYC------------------HSKWGYVIRFLTTRTMIEVNAL  221 (323)
Q Consensus       160 ~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~------------------~~~~~~~v~~Ll~~g~~~~~~~  221 (323)
                      +|++   ++..+..|.||||+|+..++.  +++++|.+.+                  ..+..+++++|++.| ++++..
T Consensus       168 ~g~~---~~~~~~~g~t~L~~A~~~~~~--~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~  241 (437)
T 1n11_A          168 RDAH---PNAAGKNGLTPLHVAVHHNNL--DIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG-GSANAE  241 (437)
T ss_dssp             TTCC---TTCCCSSCCCHHHHHHHTTCH--HHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCC
T ss_pred             CCCC---CCCCCCCCCCHHHHHHHcCCH--HHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCC
Confidence            9988   899999999999999999987  7888777653                  224568899999888 788888


Q ss_pred             ccCCCchhhhhhhccCCCchhhhHHHHhhh-------HHHHHHHHHHHH
Q 048253          222 NANGFMALDTLAQSKRDKKDWEIEDWKMIG-------WKKMRNALMVVA  263 (323)
Q Consensus       222 d~~g~tpl~~A~~~~~~~~~~~i~~~L~~~-------~~~~~~~~~~~~  263 (323)
                      +..|.||||+|++    .++.+++++|-..       ...+.++++.++
T Consensus       242 ~~~g~t~L~~A~~----~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~  286 (437)
T 1n11_A          242 SVQGVTPLHLAAQ----EGHAEMVALLLSKQANGNLGNKSGLTPLHLVA  286 (437)
T ss_dssp             CTTCCCHHHHHHH----TTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHH
T ss_pred             CCCCCCHHHHHHH----CCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence            9999999999998    8888898888332       234455666655

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.7e-40  Score=290.35  Aligned_cols=218  Identities=16%  Similarity=0.096  Sum_probs=177.6

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCcc--------ccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCC
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQL--------IIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQF   72 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~--------~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~   72 (323)
                      |+|+||.|+..|+.+.+..++..++.        .......|..|.||||+|+..|+.+++++|++++.++ +.+|.+|+
T Consensus        15 ~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~~~~g~   93 (285)
T 3d9h_A           15 VPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV-NIITADHV   93 (285)
T ss_dssp             ---------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS-CEECTTCC
T ss_pred             HHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCC
Confidence            68999999999998888887665432        1122345778999999999999999999999999997 89999999


Q ss_pred             cHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCch
Q 048253           73 SALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQL  151 (323)
Q Consensus        73 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~  151 (323)
                      ||||+|+..|+.+++++|+++|+++ +.++..| ||||+|+..|+.+++++|++ .+.+++.. ..|.||||+|+..|+.
T Consensus        94 t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-~~g~t~L~~A~~~g~~  170 (285)
T 3d9h_A           94 SPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQ-HGASVQPE-SDLASPIHEAARRGHV  170 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSSCS-CTTSCHHHHHHHHTCH
T ss_pred             CHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCHHHHHHHHHH-CCCCCCCC-CCCCCHHHHHHHcCCH
Confidence            9999999999999999999999999 8889999 99999999999999999999 77777654 4599999999999999


Q ss_pred             hHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhh
Q 048253          152 DALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDT  231 (323)
Q Consensus       152 ~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~  231 (323)
                      +++++|+++|++   ++.+|..|.||||+|+..++.                 +++++|++.| ++++. |..|.||||+
T Consensus       171 ~~v~~Ll~~g~~---~~~~d~~g~t~L~~A~~~~~~-----------------~~v~~Ll~~g-a~~~~-~~~g~t~L~~  228 (285)
T 3d9h_A          171 ECVNSLIAYGGN---IDHKISHLGTPLYLACENQQR-----------------ACVKKLLESG-ADVNQ-GKGQDSPLHA  228 (285)
T ss_dssp             HHHHHHHHTTCC---TTCCBTTTBCHHHHHHHTTCH-----------------HHHHHHHHTT-CCTTC-CBTTBCHHHH
T ss_pred             HHHHHHHHCCCC---CCCcCCCCCCHHHHHHHcCcH-----------------HHHHHHHHCC-CCCCC-CCCCCCHHHH
Confidence            999999999998   999999999999999999999                 9999999998 89995 8999999999


Q ss_pred             hhhccCCCchhhhHHHH
Q 048253          232 LAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       232 A~~~~~~~~~~~i~~~L  248 (323)
                      |++    .++.+++++|
T Consensus       229 A~~----~~~~~~v~~L  241 (285)
T 3d9h_A          229 VVR----TASEELACLL  241 (285)
T ss_dssp             HHH----TTCHHHHHHH
T ss_pred             HHH----cCCHHHHHHH
Confidence            999    9999999998

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=2.8e-40  Score=296.01  Aligned_cols=216  Identities=21%  Similarity=0.178  Sum_probs=199.1

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHh
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQ   80 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~   80 (323)
                      |+||||.|+..|+.++|++|++.+++++..   |..|.||||+|+..|+.+++++|+++++++ +.+|..|.||||+|+.
T Consensus        58 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~---~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~  133 (351)
T 3utm_A           58 KSTPLHLAAGYNRVRIVQLLLQHGADVHAK---DKGGLVPLHNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAAS  133 (351)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCC---CTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCcc---CCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHH
Confidence            689999999999999999999999887444   778999999999999999999999999998 8899999999999999


Q ss_pred             cCCHHHHHHHHhcCCcccc-----------------------------------------------------ccCCCC-c
Q 048253           81 KVHVDKIKALLQVNPAWCF-----------------------------------------------------AGDLDG-S  106 (323)
Q Consensus        81 ~g~~~~v~~Ll~~~~~~~~-----------------------------------------------------~~~~~g-t  106 (323)
                      .|+.+++++|+++|+++..                                                     ..+..| |
T Consensus       134 ~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t  213 (351)
T 3utm_A          134 KNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHET  213 (351)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCC
T ss_pred             cCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCC
Confidence            9999999999999998621                                                     134567 9


Q ss_pred             HHHHHHHh---CCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHh
Q 048253          107 PLHLAAMK---GRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVA  183 (323)
Q Consensus       107 ~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~  183 (323)
                      |||+|+..   +..+++++|++ .+.+++..|..|+||||+|+..|+.+++++|+++|++   ++.+|..|+||||+|+.
T Consensus       214 ~L~~A~~~~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~n~~d~~g~t~L~~A~~  289 (351)
T 3utm_A          214 ALHCAVASLHPKRKQVAELLLR-KGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK---MNALDSLGQTALHRAAL  289 (351)
T ss_dssp             HHHHHHHCCSTTHHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHH
T ss_pred             HHHHHHHHhCccHHHHHHHHHH-cCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHH
Confidence            99999999   55899999999 8899999999999999999999999999999999999   99999999999999999


Q ss_pred             hcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhhccCCCchhhhHHHHhh
Q 048253          184 VKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDKKDWEIEDWKMI  250 (323)
Q Consensus       184 ~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~~~~~~~~~~i~~~L~~  250 (323)
                      .|+.                 +++++|+++| ++++.+|..|.||+++|.+        ++.++|..
T Consensus       290 ~~~~-----------------~~v~~Ll~~g-ad~~~~~~~g~tal~~a~~--------~~~~~l~~  330 (351)
T 3utm_A          290 AGHL-----------------QTCRLLLSYG-SDPSIISLQGFTAAQMGNE--------AVQQILSE  330 (351)
T ss_dssp             HTCH-----------------HHHHHHHHTT-CCTTCCCTTSCCHHHHSCH--------HHHHHHHH
T ss_pred             cCcH-----------------HHHHHHHHcC-CCCCCcCCCCCChhhhhhH--------HHHHHHHh
Confidence            9999                 9999999998 8999999999999999866        67788743

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.2e-40  Score=280.26  Aligned_cols=208  Identities=19%  Similarity=0.150  Sum_probs=193.8

Q ss_pred             CCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHH
Q 048253           12 GCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALL   91 (323)
Q Consensus        12 g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll   91 (323)
                      |+.+++++|++++++++..  .|..|.||||+|+..|+.+++++|+++++++ +.+|..|+||||+|+..|+.+++++|+
T Consensus         2 g~~~~i~~Ll~~g~~~~~~--~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll   78 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQ--TDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILI   78 (223)
T ss_dssp             ---CCEETTEETTCCTTCC--CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CcHHHHHHHHHcCCCcccc--cCCCCCchHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            6788999999999886543  3567999999999999999999999999998 889999999999999999999999999


Q ss_pred             hcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCccc
Q 048253           92 QVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAE  170 (323)
Q Consensus        92 ~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~  170 (323)
                      +.++.....++..| ||||+|+..|+.+++++|++ .+.+++..|..|+||||+|+..|+.+++++|+++|++   ++.+
T Consensus        79 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~  154 (223)
T 2f8y_A           79 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN-SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN---KDMQ  154 (223)
T ss_dssp             HBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC---TTCC
T ss_pred             HcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHH-cCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCCc
Confidence            99984448888999 99999999999999999999 8899999999999999999999999999999999998   8999


Q ss_pred             ccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhhccCCCchhhhHHHH
Q 048253          171 DDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       171 d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~~~~~~~~~~i~~~L  248 (323)
                      |..|.||||+|+..++.                 +++++|+++| ++++.+|..|.||+++|++    .++.+++++|
T Consensus       155 ~~~g~t~L~~A~~~~~~-----------------~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~----~~~~~i~~~L  210 (223)
T 2f8y_A          155 NNREETPLFLAAREGSY-----------------ETAKVLLDHF-ANRDITDHMDRLPRDIAQE----RMHHDIVRLL  210 (223)
T ss_dssp             CTTCCCHHHHHHHHTCH-----------------HHHHHHHHTT-CCTTCCCTTCCCHHHHHHH----TTCHHHHHHH
T ss_pred             CCCCcCHHHHHHHcCCH-----------------HHHHHHHHcC-CCCccccccCCCHHHHHHH----hcchHHHHHH
Confidence            99999999999999999                 9999999998 8999999999999999999    9999999999

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=4e-39  Score=281.68  Aligned_cols=207  Identities=19%  Similarity=0.168  Sum_probs=151.5

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHh
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQ   80 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~   80 (323)
                      |+||||.|+..|+.++|++|++.+++++..   |  |.||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+.
T Consensus        31 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~---~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~  104 (285)
T 3kea_A           31 GHSASYYAIADNNVRLVCTLLNAGALKNLL---E--NEFPLHQAATLEDTKIVKILLFSGLDD-SQFDDKGNTALYYAVD  104 (285)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTGGGSCC---T--TCCHHHHHTTSSSCHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCCCCC---C--CCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHH
Confidence            567788888888888888887777765333   3  777888888878888888888777776 6777777788888887


Q ss_pred             cCCHHHHHHHHhcCCccccccCCCC--cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHH
Q 048253           81 KVHVDKIKALLQVNPAWCFAGDLDG--SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLL  158 (323)
Q Consensus        81 ~g~~~~v~~Ll~~~~~~~~~~~~~g--t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll  158 (323)
                      .|+.+++++|+++|+++ +.++..|  ||||+|+..|+.+++++|++ .+.+.... ..|+||||+|+..|+.+++++|+
T Consensus       105 ~g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll  181 (285)
T 3kea_A          105 SGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLS-EIPSTFDL-AILLSCIHITIKNGHVDMMILLL  181 (285)
T ss_dssp             TTCHHHHHHHHHHCGGG-GGCSSSGGGSHHHHHHHTTCHHHHHHHHT-TSCTTCCC-STHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHh-CCCccccc-cCCccHHHHHHHcChHHHHHHHH
Confidence            77788888887777777 5555555  77888887778888877777 34333111 26777888888777788888887


Q ss_pred             hCCCCCCCCcccccCCCcH-HHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhhccC
Q 048253          159 DNMDDPQFLNAEDDYGMTI-TQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKR  237 (323)
Q Consensus       159 ~~g~~~~~~~~~d~~g~t~-Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~~~~  237 (323)
                      ++|++   ++.+|..|+|| ||+|+..++.                 +++++|+++| ++++.+|.       .|+.   
T Consensus       182 ~~gad---~n~~~~~g~t~~L~~A~~~~~~-----------------~~v~~Ll~~g-ad~~~~~~-------~a~~---  230 (285)
T 3kea_A          182 DYMTS---TNTNNSLLFIPDIKLAIDNKDI-----------------EMLQALFKYD-INIYSANL-------ENVL---  230 (285)
T ss_dssp             HHHHH---TCTTCCCBCCTTHHHHHHHTCH-----------------HHHHHHTTSC-BCSTTTTG-------GGGT---
T ss_pred             HcCCC---CCcccCCCCChHHHHHHHcCCH-----------------HHHHHHHHcC-CCCCCCCh-------hhhh---
Confidence            77777   77777777776 7777777777                 7777777777 77777763       3455   


Q ss_pred             CCchhhhHHHH
Q 048253          238 DKKDWEIEDWK  248 (323)
Q Consensus       238 ~~~~~~i~~~L  248 (323)
                       .++.+++++|
T Consensus       231 -~~~~~iv~~L  240 (285)
T 3kea_A          231 -LDDAEIAKMI  240 (285)
T ss_dssp             -TTCHHHHHHH
T ss_pred             -cCCHHHHHHH
Confidence             6677777777

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=4e-40  Score=279.84  Aligned_cols=211  Identities=22%  Similarity=0.164  Sum_probs=188.3

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccc-cccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHH
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLI-IGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIAS   79 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~   79 (323)
                      |+||||.|+..|+.+++++|++.+... .+.+..|..|.||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+
T Consensus         8 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~   86 (236)
T 1ikn_D            8 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLAC   86 (236)
T ss_dssp             CCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHHHH
T ss_pred             CCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHH
Confidence            789999999999999999999987631 122345777999999999999999999999999998 889999999999999


Q ss_pred             hcCCHHHHHHHHhcCCcc-----ccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCccccccc-ccccHHHHHHhhCchh
Q 048253           80 QKVHVDKIKALLQVNPAW-----CFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMI-WGETILHLCVKHNQLD  152 (323)
Q Consensus        80 ~~g~~~~v~~Ll~~~~~~-----~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-~g~t~Lh~A~~~g~~~  152 (323)
                      ..|+.+++++|++.+++.     ....+..| ||||+|+..|+.+++++|++ .+.+++..+. .|+||||+|+..|+.+
T Consensus        87 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~~g~tpL~~A~~~~~~~  165 (236)
T 1ikn_D           87 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS-LGADVNAQEPCNGRTALHLAVDLQNPD  165 (236)
T ss_dssp             HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHH-HTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred             HcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            999999999999998652     36678889 99999999999999999999 7889999987 9999999999999999


Q ss_pred             HHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhccccccc--ccccCCCchhh
Q 048253          153 ALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVN--ALNANGFMALD  230 (323)
Q Consensus       153 ~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~--~~d~~g~tpl~  230 (323)
                      ++++|+++|++   ++.+|..|.||||+|+..++.                 +++++|+++| ++..  ..+.+|.||.+
T Consensus       166 ~v~~Ll~~ga~---~~~~~~~g~tpl~~A~~~~~~-----------------~~~~~Ll~~g-a~~~~~~~~~~~~~~~~  224 (236)
T 1ikn_D          166 LVSLLLKCGAD---VNRVTYQGYSPYQLTWGRPST-----------------RIQQQLGQLT-LENLQMLPESEDEESYD  224 (236)
T ss_dssp             HHHHHHTTTCC---SCCCCTTCCCGGGGCTTSSCH-----------------HHHHHHHTTS-CGGGSSCCCCCTTTCCC
T ss_pred             HHHHHHHcCCC---CCcccCCCCCHHHHHHccCch-----------------HHHHHHHHcc-hhhhhcCCccchHHHHh
Confidence            99999999999   999999999999999999999                 9999999999 7766  88999999998


Q ss_pred             hhhh
Q 048253          231 TLAQ  234 (323)
Q Consensus       231 ~A~~  234 (323)
                      .+..
T Consensus       225 ~~~~  228 (236)
T 1ikn_D          225 TESE  228 (236)
T ss_dssp             CC--
T ss_pred             hhcc
Confidence            8776

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=4.1e-38  Score=264.82  Aligned_cols=189  Identities=19%  Similarity=0.132  Sum_probs=179.9

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHh
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQ   80 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~   80 (323)
                      |+||||.|+..|+.+++++|++.+.+++.   .|..|.||||+|+..|+.+++++|+++++...+.++..|.||||+|+.
T Consensus        25 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~  101 (223)
T 2f8y_A           25 GETALHLAARYSRSDAAKRLLEASADANI---QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR  101 (223)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTC---CCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHH
T ss_pred             CCchHHHHHHcCCHHHHHHHHHcCCCCCC---cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHH
Confidence            68999999999999999999999987644   477899999999999999999999999985558999999999999999


Q ss_pred             cCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHh
Q 048253           81 KVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLD  159 (323)
Q Consensus        81 ~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~  159 (323)
                      .|+.+++++|+++|+++ +.++..| ||||+|+..|+.+++++|++ .+.+++..|..|+||||+|+..|+.+++++|++
T Consensus       102 ~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  179 (223)
T 2f8y_A          102 LAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLLD  179 (223)
T ss_dssp             HTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             hCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999998 8888999 99999999999999999999 789999999999999999999999999999999


Q ss_pred             CCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcc
Q 048253          160 NMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRT  214 (323)
Q Consensus       160 ~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g  214 (323)
                      +|++   ++.+|..|.||||+|+..++.                 +++++|+++|
T Consensus       180 ~ga~---~~~~~~~g~t~l~~A~~~~~~-----------------~i~~~L~~~g  214 (223)
T 2f8y_A          180 HFAN---RDITDHMDRLPRDIAQERMHH-----------------DIVRLLDEYN  214 (223)
T ss_dssp             TTCC---TTCCCTTCCCHHHHHHHTTCH-----------------HHHHHHHHTT
T ss_pred             cCCC---CccccccCCCHHHHHHHhcch-----------------HHHHHHHHcC
Confidence            9998   899999999999999999999                 9999999998

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=5.6e-38  Score=280.59  Aligned_cols=216  Identities=22%  Similarity=0.163  Sum_probs=191.7

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCcccccc------------------------------ccCCCCCCCHHHHHHHcCCH
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGR------------------------------VGVNCLSEFPLHAAALLGHV   50 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~------------------------------~~~~~~g~t~Lh~A~~~g~~   50 (323)
                      |+||||.||..|+.++|++|++++++++..                              ...|..|.||||+|+..|+.
T Consensus        59 g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~  138 (337)
T 4g8k_A           59 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKV  138 (337)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCH
T ss_pred             CcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcH
Confidence            689999999999999999999998765322                              23567799999999999999


Q ss_pred             HHHHHHHHhCCCcc---------cccCCCCCcHHHHHHhcCCHHHHHHHHh-cCCccccccCCCC-cHHHHHHHhCC---
Q 048253           51 DFEGEIRRQKPELA---------GELDSNQFSALHIASQKVHVDKIKALLQ-VNPAWCFAGDLDG-SPLHLAAMKGR---  116 (323)
Q Consensus        51 ~~v~~Ll~~~~~~~---------~~~~~~g~tpL~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~~g-t~L~~A~~~g~---  116 (323)
                      +++++|+++++++.         ...+..|.||||+|++.|+.+++++|++ .|+++ +.++..| |++|.++..+.   
T Consensus       139 ~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~-n~~d~~g~t~l~~~~~~~~~~~  217 (337)
T 4g8k_A          139 KALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSD  217 (337)
T ss_dssp             HHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCT-TCCCTTSCCHHHHHHHHSCTTT
T ss_pred             HHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCc-CccCCCCCcHHHHHHHHcCccc
Confidence            99999999998762         2345679999999999999999999996 58888 8889999 99998887654   


Q ss_pred             -HHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhC-CCCCCCCcccccCCCcHHHHHHhhcchhhhHHHH
Q 048253          117 -IDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDN-MDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVEL  194 (323)
Q Consensus       117 -~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~  194 (323)
                       .+++++|++ .+++++.+|..|+||||+|+..|+.+++++|++. |++   +|.+|.+|+||||+|+..|+.       
T Consensus       218 ~~~i~~lLl~-~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~---vn~~d~~G~TpL~~A~~~g~~-------  286 (337)
T 4g8k_A          218 VEAITHLLLD-HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE---INDTDSDGKTALLLAVELKLK-------  286 (337)
T ss_dssp             HHHHHHHHHH-TTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCC---TTCBCTTSCBHHHHHHHTTCH-------
T ss_pred             HHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCc---ccCcCCCCCCHHHHHHHcCCH-------
Confidence             467888998 8999999999999999999999999999999985 677   999999999999999999999       


Q ss_pred             HHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhhccCCCchhhhHHHH
Q 048253          195 VEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       195 l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~~~~~~~~~~i~~~L  248 (323)
                                ++|++|+++| +++|.     .+||++|++    .++.+++++|
T Consensus       287 ----------~iv~~Ll~~G-Ad~n~-----~~~L~~A~~----~~~~~iv~~L  320 (337)
T 4g8k_A          287 ----------KIAELLCKRG-ASTDC-----GDLVMTARR----NYDHSLVKVL  320 (337)
T ss_dssp             ----------HHHHHHHTTS-CSSTT-----CCHHHHHHH----TTCHHHHHHH
T ss_pred             ----------HHHHHHHHCC-CCCCC-----CCHHHHHHH----cCCHHHHHHH
Confidence                      9999999998 88875     469999999    8999999998

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.3e-38  Score=276.98  Aligned_cols=190  Identities=22%  Similarity=0.215  Sum_probs=176.5

Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc--ccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHH
Q 048253           33 VNCLSEFPLHAAALLGHVDFEGEIRRQKPEL--AGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLH  109 (323)
Q Consensus        33 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~  109 (323)
                      .|..|.||||+|+..|+.+++++|++++++.  ++.+|..|+||||+|+..|+.+++++|+++|+++ +.++..| ||||
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~   83 (282)
T 1oy3_D            5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALH   83 (282)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHH
Confidence            4777999999999999999999999998872  4889999999999999999999999999999999 8889999 9999


Q ss_pred             HHHHhCCHHHHHHHHHhCC----------------------------------------------CcccccccccccHHH
Q 048253          110 LAAMKGRIDVLEELFRTRP----------------------------------------------LAASATMIWGETILH  143 (323)
Q Consensus       110 ~A~~~g~~~~v~~Ll~~~~----------------------------------------------~~~~~~~~~g~t~Lh  143 (323)
                      +|+..|+.+++++|++...                                              .+++..+..|+||||
T Consensus        84 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~  163 (282)
T 1oy3_D           84 LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH  163 (282)
T ss_dssp             HHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHH
T ss_pred             HHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHH
Confidence            9999999999999998332                                              236677889999999


Q ss_pred             HHHhhCchhHHHHHHhCCCCCCCCcccccC-CCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccc
Q 048253          144 LCVKHNQLDALKFLLDNMDDPQFLNAEDDY-GMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALN  222 (323)
Q Consensus       144 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~-g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d  222 (323)
                      +|+..|+.+++++|+++|++   ++.++.. |+||||+|+..|+.                 +++++|+++| ++++.+|
T Consensus       164 ~A~~~g~~~~v~~Ll~~g~~---~~~~~~~~g~tpL~~A~~~~~~-----------------~~v~~Ll~~g-ad~~~~d  222 (282)
T 1oy3_D          164 VAVIHKDAEMVRLLRDAGAD---LNKPEPTCGRTPLHLAVEAQAA-----------------SVLELLLKAG-ADPTARM  222 (282)
T ss_dssp             HHHHTTCHHHHHHHHHHTCC---TTCCCTTTCCCHHHHHHHTTCH-----------------HHHHHHHHTT-CCTTCCC
T ss_pred             HHHHcCCHHHHHHHHHcCCC---CCCCCCCCCcCHHHHHHHcCCH-----------------HHHHHHHHcC-CCCcccc
Confidence            99999999999999999998   8888854 99999999999999                 9999999998 9999999


Q ss_pred             cCCCchhhhhhhccCCCchhhhHHHH
Q 048253          223 ANGFMALDTLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       223 ~~g~tpl~~A~~~~~~~~~~~i~~~L  248 (323)
                      ..|+||||+|+.    .++.+++++|
T Consensus       223 ~~g~tpL~~A~~----~~~~~~v~~L  244 (282)
T 1oy3_D          223 YGGRTPLGSALL----RPNPILARLL  244 (282)
T ss_dssp             TTSCCHHHHHHT----SSCHHHHHHH
T ss_pred             cCCCCHHHHHHH----cCCcHHHHHH
Confidence            999999999999    9999999999

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1e-38  Score=288.39  Aligned_cols=215  Identities=18%  Similarity=0.094  Sum_probs=194.0

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHh----CCCcccc----------
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQ----KPELAGE----------   66 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~----~~~~~~~----------   66 (323)
                      |+||||.|+..|+.++|++|++.+++.+     +..|.||||+|+..|+.+++++|++.    +.++ +.          
T Consensus        53 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-----~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~~~~~~~  126 (364)
T 3ljn_A           53 GCTALHLACKFGCVDTAKYLASVGEVHS-----LWHGQKPIHLAVMANKTDLVVALVEGAKERGQMP-ESLLNECDEREV  126 (364)
T ss_dssp             CCCHHHHHHHHCCHHHHHHHHHHCCCCC-----CBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCH-HHHHTCCCCCCE
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCcc-----ccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCH-HHHHhhcchHhh
Confidence            6899999999999999999999998542     23599999999999999999999999    7666 54          


Q ss_pred             -------cCCCCCcHHHHHHhcC--CHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCc-----c
Q 048253           67 -------LDSNQFSALHIASQKV--HVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLA-----A  131 (323)
Q Consensus        67 -------~~~~g~tpL~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~-----~  131 (323)
                             +|..|.||||+|+..|  +.+++++|++.|+++ +.++..| ||||+|+..|+.+++++|++ .+.+     +
T Consensus       127 ~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~  204 (364)
T 3ljn_A          127 NEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-TAKDKADETPLMRAMEFRNREALDLMMD-TVPSKSSLRL  204 (364)
T ss_dssp             EEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-HCSCSSSCCT
T ss_pred             hhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHh-cccccccccc
Confidence                   8889999999999999  999999999999999 8889999 99999999999999999999 5555     8


Q ss_pred             cccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHh
Q 048253          132 SATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLT  211 (323)
Q Consensus       132 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll  211 (323)
                      +..|..|+||||+|+..|+.+++++|+++|++   ++.+|..|.||||+|+..|+.                 +++++|+
T Consensus       205 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad---~~~~d~~g~tpL~~A~~~g~~-----------------~~v~~Ll  264 (364)
T 3ljn_A          205 DYANKQGNSHLHWAILINWEDVAMRFVEMGID---VNMEDNEHTVPLYLSVRAAMV-----------------LLTKELL  264 (364)
T ss_dssp             TCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCC---TTCCCTTSCCHHHHHHHTCCH-----------------HHHHHHH
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHhChH-----------------HHHHHHH
Confidence            99999999999999999999999999999999   999999999999999999999                 9999999


Q ss_pred             hcccccccc------------cccCCCchhhhhhhccCCCc-hhhhHHHH
Q 048253          212 TRTMIEVNA------------LNANGFMALDTLAQSKRDKK-DWEIEDWK  248 (323)
Q Consensus       212 ~~g~~~~~~------------~d~~g~tpl~~A~~~~~~~~-~~~i~~~L  248 (323)
                      +++ ++++.            .+..|+||++.|+.    .+ ..++.++|
T Consensus       265 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~----~~~~~~v~~ll  309 (364)
T 3ljn_A          265 QKT-DVFLIQACPYHNGTTVLPDRVVWLDFVPAAA----DPSKQEVLQLL  309 (364)
T ss_dssp             HHS-CHHHHHTCTTBSSSSBCGGGCCCCTTSCSSC----CHHHHHHHHHH
T ss_pred             HcC-CchhhhcCcccCcccccccccccccchhhhh----ccCHHHHHHHH
Confidence            987 55433            56788999999988    66 44556666

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=5.3e-38  Score=265.55  Aligned_cols=190  Identities=21%  Similarity=0.168  Sum_probs=179.6

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHh
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQ   80 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~   80 (323)
                      |+||||.|+..|+.+++++|++.+.+++.   .|..|.||||+|+..|+.+++++|+++++++ +.+|..|.||||+|+.
T Consensus        40 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~  115 (231)
T 3aji_A           40 SRTALHWACSAGHTEIVEFLLQLGVPVND---KDDAGWSPLHIAASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAAS  115 (231)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCSCC---CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             CCCHHHHHHHcCcHHHHHHHHHhCCCCCC---cCCCCCCHHHHHHHcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHH
Confidence            68999999999999999999999987644   4778999999999999999999999999998 8899999999999999


Q ss_pred             cCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHh
Q 048253           81 KVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLD  159 (323)
Q Consensus        81 ~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~  159 (323)
                      .|+.+++++|+++|+++ +.++..| ||||+|+..|+.+++++|++ .+.+++.+|..|+||||+|+..|+.+++++|++
T Consensus       116 ~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  193 (231)
T 3aji_A          116 KNRHEIAVMLLEGGANP-DAKDHYDATAMHRAAAKGNLKMVHILLF-YKASTNIQDTEGNTPLHLACDEERVEEAKFLVT  193 (231)
T ss_dssp             TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHh-cCCCccccCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            99999999999999998 7888999 99999999999999999999 889999999999999999999999999999999


Q ss_pred             CCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhccccc
Q 048253          160 NMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIE  217 (323)
Q Consensus       160 ~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~  217 (323)
                      +|++   ++.+|..|.||||+|+..++.                 +++++|.+++ ++
T Consensus       194 ~ga~---~~~~~~~g~t~l~~A~~~~~~-----------------~i~~lL~~~~-a~  230 (231)
T 3aji_A          194 QGAS---IYIENKEEKTPLQVAKGGLGL-----------------ILKRLAEGEE-AS  230 (231)
T ss_dssp             TTCC---SCCCCTTSCCHHHHSCHHHHH-----------------HHHHHHHHHH-HC
T ss_pred             CCCC---CCCCCCCCCCHHHHHHhhHHH-----------------HHHHHHcccc-cc
Confidence            9999   899999999999999999998                 9999998876 44

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=8.4e-38  Score=268.45  Aligned_cols=189  Identities=19%  Similarity=0.132  Sum_probs=178.0

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHh
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQ   80 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~   80 (323)
                      |+||||.|+..|+.++|++|++.+++++.   .|..|.||||+|+..|+.+++++|+++++..++.++..|.||||+|+.
T Consensus        57 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~  133 (253)
T 1yyh_A           57 GETALHLAARYSRSDAAKRLLEASADANI---QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR  133 (253)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCTTC---CCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHH
Confidence            68999999999999999999999988744   377899999999999999999999999985558999999999999999


Q ss_pred             cCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHh
Q 048253           81 KVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLD  159 (323)
Q Consensus        81 ~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~  159 (323)
                      .|+.+++++|++.|+++ +.++..| ||||+|+..|+.+++++|++ .+++++..|..|+||||+|+..|+.+++++|++
T Consensus       134 ~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~  211 (253)
T 1yyh_A          134 LAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLLD  211 (253)
T ss_dssp             HTCSSHHHHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             cChHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            99999999999999999 8889999 99999999999999999999 899999999999999999999999999999999


Q ss_pred             CCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcc
Q 048253          160 NMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRT  214 (323)
Q Consensus       160 ~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g  214 (323)
                      +|++   ++.+|..|+||||+|+..|+.                 +++++|....
T Consensus       212 ~ga~---~~~~d~~g~tpl~~A~~~g~~-----------------~i~~~l~~~~  246 (253)
T 1yyh_A          212 HFAN---RDITDHMDRLPRDIAQERMHH-----------------DIVRLLDLEH  246 (253)
T ss_dssp             TTCC---TTCCCTTCCCHHHHHHHTTCH-----------------HHHHHHHC--
T ss_pred             cCCC---ccccccCCCCHHHHHHHcCCH-----------------HHHHHHHHHh
Confidence            9999   899999999999999999999                 9999998765

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.3e-39  Score=295.32  Aligned_cols=218  Identities=14%  Similarity=0.115  Sum_probs=194.5

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCC-CCCCCHHHHHHHcCCHHHHHHHH--------HhCCCcccccCCCC
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVN-CLSEFPLHAAALLGHVDFEGEIR--------RQKPELAGELDSNQ   71 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll--------~~~~~~~~~~~~~g   71 (323)
                      |+||||.|+..+. +++++|+...  ++.   .| ..|+||||+|+..|+.+++++|+        +.|+++ +.+|..|
T Consensus        94 g~t~L~~Aa~~~~-~~~~~L~~~~--~n~---~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~v-n~~d~~g  166 (373)
T 2fo1_E           94 SPIKLHTEAAGSY-AITEPITRES--VNI---IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NAMDCDE  166 (373)
T ss_dssp             CCCHHHHHHHSSS-CCCSCCSTTT--TTT---CCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-TCCCTTS
T ss_pred             CccHHHHHhcCCc-hHHHHhcccc--ccc---cCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCC-cCCCCCC
Confidence            6899999999665 7888876643  222   34 56999999999999998888776        788887 9999999


Q ss_pred             CcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCC---CcccccccccccHHHHHHh
Q 048253           72 FSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRP---LAASATMIWGETILHLCVK  147 (323)
Q Consensus        72 ~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~---~~~~~~~~~g~t~Lh~A~~  147 (323)
                      .||||+|+..|+.+++++|+++|+++ +.++..| ||||+|+..|+.+++++|++ .+   .+++..|..|.||||+|+.
T Consensus       167 ~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~d~~g~t~L~~A~~  244 (373)
T 2fo1_E          167 NTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLN-STKLKGDIEELDRNGMTALMIVAH  244 (373)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTT-SHHHHHTTSCCCTTSCCHHHHHHH
T ss_pred             CCHHHHHHHcChHHHHHHHHHCCCCC-cccCCCCCCHHHHHHHCCCHHHHHHHHh-cCccccChhhcCCCCCCHHHHHHH
Confidence            99999999999999999999999999 7889999 99999999999999999999 54   6888999999999999999


Q ss_pred             hC---chhHHHHHHhCCCCCCC-----CcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhccccccc
Q 048253          148 HN---QLDALKFLLDNMDDPQF-----LNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVN  219 (323)
Q Consensus       148 ~g---~~~~v~~Ll~~g~~~~~-----~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~  219 (323)
                      .+   +.+++++|+++|++...     .+.+|..|.||||+|+..|+.                 ++|++|+++++++++
T Consensus       245 ~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~-----------------~~v~~Ll~~~~~~~n  307 (373)
T 2fo1_E          245 NEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNM-----------------PIVKYLVGEKGSNKD  307 (373)
T ss_dssp             SCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCH-----------------HHHHHHHHHSCCCTT
T ss_pred             hCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCH-----------------HHHHHHHHhcCCCcc
Confidence            98   89999999999988321     123678999999999999999                 999999998779999


Q ss_pred             ccccCCCchhhhhhhccCCCchhhhHHHH
Q 048253          220 ALNANGFMALDTLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       220 ~~d~~g~tpl~~A~~~~~~~~~~~i~~~L  248 (323)
                      .+|..|.||||+|+.    .++.+++++|
T Consensus       308 ~~d~~g~TpL~~A~~----~g~~~iv~~L  332 (373)
T 2fo1_E          308 KQDEDGKTPIMLAAQ----EGRIEVVMYL  332 (373)
T ss_dssp             CCCTTCCCHHHHHHH----HTCHHHHHHH
T ss_pred             CcCCCCCCHHHHHHH----cCCHHHHHHH
Confidence            999999999999999    9999999999

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=2.9e-37  Score=255.47  Aligned_cols=189  Identities=21%  Similarity=0.191  Sum_probs=175.3

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCc-cccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHH
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQ-LIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIAS   79 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~   79 (323)
                      +.||||.|+..|+.+.++.|++.++ ++   +..|..|.||||+|+..|+.+++++|+++++++ +.+|..|+||||+|+
T Consensus         5 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~   80 (201)
T 3hra_A            5 EVGALLEAANQRDTKKVKEILQDTTYQV---DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAG   80 (201)
T ss_dssp             CTTHHHHHHHTTCHHHHHHHHTCTTCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             cccHHHHHHHhccHHHHHHHHHcCCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH
Confidence            5699999999999999999999987 44   334777999999999999999999999999998 889999999999999


Q ss_pred             hcCCHHHHHHHHhc-CCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCc-----hh
Q 048253           80 QKVHVDKIKALLQV-NPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQ-----LD  152 (323)
Q Consensus        80 ~~g~~~~v~~Ll~~-~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~-----~~  152 (323)
                      ..|+.+++++|++. +.++ +.++..| ||||+|+..|+.+++++|++..+.+++..|..|+||||+|+..++     .+
T Consensus        81 ~~~~~~~~~~Ll~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~  159 (201)
T 3hra_A           81 AQGRTEILAYMLKHATPDL-NKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQD  159 (201)
T ss_dssp             HTTCHHHHHHHHHHSCCCT-TCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHH
T ss_pred             HcCCHHHHHHHHhccCccc-ccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHH
Confidence            99999999999955 4455 8889999 999999999999999999996669999999999999999999987     99


Q ss_pred             HHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcc
Q 048253          153 ALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRT  214 (323)
Q Consensus       153 ~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g  214 (323)
                      ++++|+++|++   ++.+|..|+||||+|+..|+.                 +++++|+++|
T Consensus       160 ~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~-----------------~~~~~Ll~~G  201 (201)
T 3hra_A          160 IVKLLMENGAD---QSIKDNSGRTAMDYANQKGYT-----------------EISKILAQYN  201 (201)
T ss_dssp             HHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCH-----------------HHHHHHHTCC
T ss_pred             HHHHHHHCCCC---CCccCCCCCCHHHHHHHcCCH-----------------hHHHHHHhcC
Confidence            99999999999   899999999999999999999                 9999999875

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=4.4e-37  Score=260.90  Aligned_cols=190  Identities=23%  Similarity=0.255  Sum_probs=181.7

Q ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHH
Q 048253           32 GVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHL  110 (323)
Q Consensus        32 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~  110 (323)
                      ..|..|.||||+|+..|+.+++++|++++.++ +..+..|+||||+|+..|+.+++++|+++|+++ +.++..| ||||+
T Consensus         6 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~   83 (237)
T 3b7b_A            6 MEHQNKRSPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTCLHL   83 (237)
T ss_dssp             CSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCCHHHH
T ss_pred             cccCCCCCHHHHHHHcCcHHHHHHHHHcCCCc-CccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCcHHHH
Confidence            34777999999999999999999999999998 889999999999999999999999999999998 7888999 99999


Q ss_pred             HHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhh
Q 048253          111 AAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQN  190 (323)
Q Consensus       111 A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~  190 (323)
                      |+..|+.+++++|++..+.+++..+..|.||||+|+..++.+++++|+++|++   ++.+|..|.||||+|+..|+.   
T Consensus        84 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~---  157 (237)
T 3b7b_A           84 AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD---INIRDNEENICLHWAAFSGCV---  157 (237)
T ss_dssp             HHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHCCH---
T ss_pred             HHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCccCCCCCCHHHHHHHCCCH---
Confidence            99999999999999965689999999999999999999999999999999998   899999999999999999999   


Q ss_pred             HHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhhccCCCchhhhHHHH
Q 048253          191 LVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       191 ~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~~~~~~~~~~i~~~L  248 (323)
                                    +++++|++.| ++++.+|..|.||||+|++    .++.+++++|
T Consensus       158 --------------~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~----~~~~~~v~~L  196 (237)
T 3b7b_A          158 --------------DIAEILLAAK-CDLHAVNIHGDSPLHIAAR----ENRYDCVVLF  196 (237)
T ss_dssp             --------------HHHHHHHTTT-CCTTCCCTTCCCHHHHHHH----TTCHHHHHHH
T ss_pred             --------------HHHHHHHHcC-CCCCCcCCCCCCHHHHHHH----hCCHhHHHHH
Confidence                          9999999998 8999999999999999999    8999999998

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=3.3e-37  Score=260.95  Aligned_cols=186  Identities=18%  Similarity=0.227  Sum_probs=172.2

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHh-CCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccc----cccCCCC-cHHH
Q 048253           36 LSEFPLHAAALLGHVDFEGEIRRQ-KPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWC----FAGDLDG-SPLH  109 (323)
Q Consensus        36 ~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~----~~~~~~g-t~L~  109 (323)
                      .|+||||+|+..|+.+++++|++. +.++ +.+|..|+||||+|+..|+.+++++|++.|+++.    ..++..| ||||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~   80 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEV-HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH   80 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCc-ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence            489999999999999999999998 7776 8999999999999999999999999999998863    3456688 9999


Q ss_pred             HHHHhCCHHHHHHHHHhCCCccccccc-------------ccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCc
Q 048253          110 LAAMKGRIDVLEELFRTRPLAASATMI-------------WGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMT  176 (323)
Q Consensus       110 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~-------------~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t  176 (323)
                      +|+..|+.+++++|++ .+.+++..+.             .|+||||+|+..|+.+++++|+++|++   ++.+|..|+|
T Consensus        81 ~A~~~~~~~~v~~Ll~-~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~t  156 (232)
T 2rfa_A           81 IAVINQNVNLVRALLA-RGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD---IRAQDSLGNT  156 (232)
T ss_dssp             HHHHTTCHHHHHHHHH-TTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCC
T ss_pred             HHHHcCCHHHHHHHHh-CCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCC
Confidence            9999999999999999 7888887765             799999999999999999999999999   9999999999


Q ss_pred             HHHHHHhhcchhhhHHHHHHHHhhcchHHHH----HHHhhcccccc------cccccCCCchhhhhhhccCCCchhhhHH
Q 048253          177 ITQLAVAVKLCFQNLVELVEEYCHSKWGYVI----RFLTTRTMIEV------NALNANGFMALDTLAQSKRDKKDWEIED  246 (323)
Q Consensus       177 ~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v----~~Ll~~g~~~~------~~~d~~g~tpl~~A~~~~~~~~~~~i~~  246 (323)
                      |||+|+..++.                 +++    ++|+++| +++      +.+|..|+||||+|++    .++.++++
T Consensus       157 ~L~~A~~~~~~-----------------~~~~~i~~~Ll~~g-~~~~~~~~~~~~~~~g~tpl~~A~~----~g~~~~v~  214 (232)
T 2rfa_A          157 VLHILILQPNK-----------------TFACQMYNLLLSYD-GGDHLKSLELVPNNQGLTPFKLAGV----EGNIVMFQ  214 (232)
T ss_dssp             HHHHHHTCSCH-----------------HHHHHHHHHHHHTT-CSCSSCCGGGCCCTTSCCHHHHHHH----HTCHHHHH
T ss_pred             HHHHHHHcCCh-----------------HHHHHHHHHHHhcC-CchhhhhhhccCCCCCCCHHHHHHH----cCCHHHHH
Confidence            99999999998                 777    9999998 677      6899999999999999    99999999


Q ss_pred             HH
Q 048253          247 WK  248 (323)
Q Consensus       247 ~L  248 (323)
                      +|
T Consensus       215 ~L  216 (232)
T 2rfa_A          215 HL  216 (232)
T ss_dssp             HH
T ss_pred             HH
Confidence            98

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=3.5e-37  Score=254.97  Aligned_cols=188  Identities=21%  Similarity=0.246  Sum_probs=178.6

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHH
Q 048253           35 CLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAM  113 (323)
Q Consensus        35 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~  113 (323)
                      ..+.||||.|+..|+.++++.|++.+...++.+|..|+||||+|++.|+.+++++|+++|+++ +.++..| ||||+|+.
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~   81 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAGA   81 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHH
Confidence            458999999999999999999999988445899999999999999999999999999999999 8889999 99999999


Q ss_pred             hCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCC-CCCCCCcccccCCCcHHHHHHhhcc-----h
Q 048253          114 KGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNM-DDPQFLNAEDDYGMTITQLAVAVKL-----C  187 (323)
Q Consensus       114 ~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~~~~~~~~~d~~g~t~Lh~A~~~~~-----~  187 (323)
                      .|+.+++++|++..+.+++..|..|.||||+|+..|+.+++++|+++| ++   ++.+|..|+||||+|+..++     .
T Consensus        82 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~~g~t~L~~A~~~~~~~~~~~  158 (201)
T 3hra_A           82 QGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRED---IDFQNDFGYTALIEAVGLREGNQLYQ  158 (201)
T ss_dssp             TTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCC---TTCCCTTSCCHHHHHHHSSCCSHHHH
T ss_pred             cCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCC---cCCCCCCCCCHHHHHHHhccchhhHH
Confidence            999999999997688899999999999999999999999999999998 77   89999999999999999887     6


Q ss_pred             hhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhhccCCCchhhhHHHH
Q 048253          188 FQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       188 ~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~~~~~~~~~~i~~~L  248 (323)
                                       +++++|+++| ++++.+|..|.||+|+|++    .++.+++++|
T Consensus       159 -----------------~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~----~~~~~~~~~L  197 (201)
T 3hra_A          159 -----------------DIVKLLMENG-ADQSIKDNSGRTAMDYANQ----KGYTEISKIL  197 (201)
T ss_dssp             -----------------HHHHHHHHTT-CCTTCCCTTSCCHHHHHHH----HTCHHHHHHH
T ss_pred             -----------------HHHHHHHHCC-CCCCccCCCCCCHHHHHHH----cCCHhHHHHH
Confidence                             9999999998 9999999999999999999    9999999998

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=6e-37  Score=258.40  Aligned_cols=187  Identities=22%  Similarity=0.247  Sum_probs=176.0

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcC--CccccccCCCC-cHHHHHHH
Q 048253           37 SEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVN--PAWCFAGDLDG-SPLHLAAM  113 (323)
Q Consensus        37 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~--~~~~~~~~~~g-t~L~~A~~  113 (323)
                      |+||||+|+..|+.+++++|++.+++..+.+|..|+||||+|+..|+.+++++|++.|  .++....+..| ||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            7899999999999999999999999987779999999999999999999999999999  66633377889 99999999


Q ss_pred             hCCHHHHHHHHHhCC--CcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhH
Q 048253          114 KGRIDVLEELFRTRP--LAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNL  191 (323)
Q Consensus       114 ~g~~~~v~~Ll~~~~--~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~  191 (323)
                      .|+.+++++|++ .+  .+++..+..|.||||+|+..|+.+++++|+++|++   ++.+|..|.||||+|+..|+.    
T Consensus        82 ~~~~~~~~~Ll~-~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~----  153 (228)
T 2dzn_A           82 VGNLEVVKSLYD-RPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS---VRIKDKFNQIPLHRAASVGSL----  153 (228)
T ss_dssp             HCCHHHHHHHHS-SSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---SCCCCTTSCCHHHHHHHTTCH----
T ss_pred             cCCHHHHHHHHh-CCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC---ccccCCCCCCHHHHHHHcCCH----
Confidence            999999999999 55  88899999999999999999999999999999998   999999999999999999999    


Q ss_pred             HHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhhccCCCchhhhHHHH
Q 048253          192 VELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       192 ~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~~~~~~~~~~i~~~L  248 (323)
                                   +++++|++.|.++++.+|..|+||||+|+.    .++.+++++|
T Consensus       154 -------------~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~----~~~~~~v~~L  193 (228)
T 2dzn_A          154 -------------KLIELLCGLGKSAVNWQDKQGWTPLFHALA----EGHGDAAVLL  193 (228)
T ss_dssp             -------------HHHHHHHTTTCCCSCCCCTTSCCHHHHHHH----TTCHHHHHHH
T ss_pred             -------------HHHHHHHhcCcccccCcCCCCCCHHHHHHH----cCCHHHHHHH
Confidence                         999999999878999999999999999999    9999999998

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=2.7e-37  Score=270.05  Aligned_cols=204  Identities=14%  Similarity=0.048  Sum_probs=182.7

Q ss_pred             HHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHH
Q 048253            9 ALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIK   88 (323)
Q Consensus         9 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~   88 (323)
                      +...+.+.+..++..+ ++   ...|..|.||||+|+..|+.+++++|+++++++ +.+  +|+||||+|+..|+.++++
T Consensus         7 i~~~~~~~v~~lL~~~-~~---~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~--~g~t~L~~A~~~g~~~~v~   79 (285)
T 3kea_A            7 INTWKSKQLKSFLSSK-DT---FKADVHGHSASYYAIADNNVRLVCTLLNAGALK-NLL--ENEFPLHQAATLEDTKIVK   79 (285)
T ss_dssp             GGGCCHHHHHHHHHST-TT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGG-SCC--TTCCHHHHHTTSSSCHHHH
T ss_pred             HHhcCHHHHHHHHHhC-CC---CccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCC--CCCCHHHHHHHcCCHHHHH
Confidence            3445555555555544 23   345778999999999999999999999999987 555  5999999999999999999


Q ss_pred             HHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCccccccccc-ccHHHHHHhhCchhHHHHHHhCCCCCCC
Q 048253           89 ALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWG-ETILHLCVKHNQLDALKFLLDNMDDPQF  166 (323)
Q Consensus        89 ~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~  166 (323)
                      +|+++|+++ +.++..| ||||+|+..|+.+++++|++ .+++++..+..| .||||+|+..|+.+++++|+++|++   
T Consensus        80 ~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~---  154 (285)
T 3kea_A           80 ILLFSGLDD-SQFDDKGNTALYYAVDSGNMQTVKLFVK-KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS---  154 (285)
T ss_dssp             HHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-HCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCT---
T ss_pred             HHHHCCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHh-cCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCc---
Confidence            999999998 7889999 99999999999999999999 689999999999 8999999999999999999999976   


Q ss_pred             Cccccc-CCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCch-hhhhhhccCCCchhhh
Q 048253          167 LNAEDD-YGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMA-LDTLAQSKRDKKDWEI  244 (323)
Q Consensus       167 ~~~~d~-~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tp-l~~A~~~~~~~~~~~i  244 (323)
                      .  .+. .|.||||+|+..|+.                 +++++|+++| ++++.+|..|.|| ||+|++    .++.++
T Consensus       155 ~--~~~~~g~t~L~~A~~~g~~-----------------~~v~~Ll~~g-ad~n~~~~~g~t~~L~~A~~----~~~~~~  210 (285)
T 3kea_A          155 T--FDLAILLSCIHITIKNGHV-----------------DMMILLLDYM-TSTNTNNSLLFIPDIKLAID----NKDIEM  210 (285)
T ss_dssp             T--CCCSTHHHHHHHHHHTTCH-----------------HHHHHHHHHH-HHTCTTCCCBCCTTHHHHHH----HTCHHH
T ss_pred             c--ccccCCccHHHHHHHcChH-----------------HHHHHHHHcC-CCCCcccCCCCChHHHHHHH----cCCHHH
Confidence            3  333 899999999999999                 9999999998 9999999999998 999999    999999


Q ss_pred             HHHH
Q 048253          245 EDWK  248 (323)
Q Consensus       245 ~~~L  248 (323)
                      +++|
T Consensus       211 v~~L  214 (285)
T 3kea_A          211 LQAL  214 (285)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9999

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.1e-36  Score=258.80  Aligned_cols=189  Identities=22%  Similarity=0.222  Sum_probs=175.9

Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHH----hCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cH
Q 048253           33 VNCLSEFPLHAAALLGHVDFEGEIRR----QKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SP  107 (323)
Q Consensus        33 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~  107 (323)
                      +|.+|.||||+|+..|+.+++++|++    .+.++ +.+|..|+||||+|+..|+.+++++|++.|+++ +.++..| ||
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~   82 (241)
T 1k1a_A            5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTA   82 (241)
T ss_dssp             --CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCH
Confidence            47779999999999999999999997    56666 889999999999999999999999999999998 7888999 99


Q ss_pred             HHHHHHhCCHHHHHHHHHhCC---CcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccc-cCCCcHHHHHHh
Q 048253          108 LHLAAMKGRIDVLEELFRTRP---LAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAED-DYGMTITQLAVA  183 (323)
Q Consensus       108 L~~A~~~g~~~~v~~Ll~~~~---~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d-~~g~t~Lh~A~~  183 (323)
                      ||+|+..|+.+++++|++...   .+++..+..|+||||+|+..|+.+++++|+++|++   ++.++ ..|.||||+|+.
T Consensus        83 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~~g~t~L~~A~~  159 (241)
T 1k1a_A           83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGAD---IDAVDIKSGRSPLIHAVE  159 (241)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTTCCCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCC---cccccccCCCcHHHHHHH
Confidence            999999999999999999543   27888899999999999999999999999999998   88888 889999999999


Q ss_pred             hcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhhccCCCchhhhHHHH
Q 048253          184 VKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       184 ~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~~~~~~~~~~i~~~L  248 (323)
                      .++.                 +++++|+++| ++++.+|..|.||||+|+.    .++.+++++|
T Consensus       160 ~~~~-----------------~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~----~~~~~~v~~L  202 (241)
T 1k1a_A          160 NNSL-----------------SMVQLLLQHG-ANVNAQMYSGSSALHSASG----RGLLPLVRTL  202 (241)
T ss_dssp             TTCH-----------------HHHHHHHHTT-CCTTCBCTTSCBHHHHHHH----HTCHHHHHHH
T ss_pred             cCCH-----------------HHHHHHHHcC-CCCCCcCCCCCCHHHHHHH----cCCHHHHHHH
Confidence            9999                 9999999998 8999999999999999999    8999999998

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=9.5e-38  Score=268.36  Aligned_cols=196  Identities=22%  Similarity=0.209  Sum_probs=173.4

Q ss_pred             CCcHHHHHHHhCCHH----HHHHHhccCccccccc-cCCCCCCCHHHHHHHc---CCHHHHHHHHHhCCCccc-------
Q 048253            1 MKSMLYEAALKGCEP----TLLELLQQDQLIIGRV-GVNCLSEFPLHAAALL---GHVDFEGEIRRQKPELAG-------   65 (323)
Q Consensus         1 g~t~L~~A~~~g~~~----~v~~Ll~~~~~~~~~~-~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~-------   65 (323)
                      |+||||.|+..|+.+    ++++|++.+.+++... ..|..|.||||+|+..   |+.+++++|++.++++..       
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~   81 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA   81 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence            789999999999997    6677777888765400 1377799999999999   999999999999876521       


Q ss_pred             ---ccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCC-------------C-cHHHHHHHhCCHHHHHHHHHh--
Q 048253           66 ---ELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLD-------------G-SPLHLAAMKGRIDVLEELFRT--  126 (323)
Q Consensus        66 ---~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-------------g-t~L~~A~~~g~~~~v~~Ll~~--  126 (323)
                         .+|..|+||||+|+..|+.+++++|+++|+++ +.++..             | ||||+|+..|+.+++++|++.  
T Consensus        82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~  160 (256)
T 2etb_A           82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH  160 (256)
T ss_dssp             CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred             ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence               23478999999999999999999999999998 667665             8 999999999999999999996  


Q ss_pred             CCCcccccccccccHHHHHHh--hCchh-------HHHHHHhCCCCCCCC-------cccccCCCcHHHHHHhhcchhhh
Q 048253          127 RPLAASATMIWGETILHLCVK--HNQLD-------ALKFLLDNMDDPQFL-------NAEDDYGMTITQLAVAVKLCFQN  190 (323)
Q Consensus       127 ~~~~~~~~~~~g~t~Lh~A~~--~g~~~-------~v~~Ll~~g~~~~~~-------~~~d~~g~t~Lh~A~~~~~~~~~  190 (323)
                      .+++++.+|..|+||||+|+.  .++.+       ++++|+++|++   +       +.+|..|+||||+|+..|+.   
T Consensus       161 ~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~---~~~~~~~~~~~d~~g~tpL~~A~~~g~~---  234 (256)
T 2etb_A          161 QPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGAR---LCPTVQLEEISNHQGLTPLKLAAKEGKI---  234 (256)
T ss_dssp             CCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH---HSTTCCGGGCCCTTSCCHHHHHHHTTCH---
T ss_pred             cCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCC---cccccccccccCCCCCCHHHHHHHhCCH---
Confidence            689999999999999999999  78888       99999999988   6       89999999999999999999   


Q ss_pred             HHHHHHHHhhcchHHHHHHHhhcccccc
Q 048253          191 LVELVEEYCHSKWGYVIRFLTTRTMIEV  218 (323)
Q Consensus       191 ~~~~l~~~~~~~~~~~v~~Ll~~g~~~~  218 (323)
                                    +++++|+++| .+.
T Consensus       235 --------------~~v~~Ll~~g-~~~  247 (256)
T 2etb_A          235 --------------EIFRHILQRE-FSG  247 (256)
T ss_dssp             --------------HHHHHHHHHH-HHH
T ss_pred             --------------HHHHHHHhCC-CCC
Confidence                          9999999988 444

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=6.4e-38  Score=266.19  Aligned_cols=190  Identities=24%  Similarity=0.231  Sum_probs=172.3

Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHhCCC---cccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHH
Q 048253           33 VNCLSEFPLHAAALLGHVDFEGEIRRQKPE---LAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPL  108 (323)
Q Consensus        33 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~---~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L  108 (323)
                      +|.+|.||||+|+..|+.+++++|++.+..   .++.+|..|+||||+|+..|+.+++++|+++|+++ +.++..| |||
T Consensus         4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L   82 (236)
T 1ikn_D            4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPL   82 (236)
T ss_dssp             ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHH
T ss_pred             CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHH
Confidence            467799999999999999999999988763   24889999999999999999999999999999999 8889999 999


Q ss_pred             HHHHHhCCHHHHHHHHHhCC-----CcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCccccc-CCCcHHHHHH
Q 048253          109 HLAAMKGRIDVLEELFRTRP-----LAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDD-YGMTITQLAV  182 (323)
Q Consensus       109 ~~A~~~g~~~~v~~Ll~~~~-----~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~-~g~t~Lh~A~  182 (323)
                      |+|+..|+.+++++|++...     ..++..+..|.||||+|+..|+.+++++|+++|++   ++.++. .|.||||+|+
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~~g~tpL~~A~  159 (236)
T 1ikn_D           83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD---VNAQEPCNGRTALHLAV  159 (236)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC---TTCCCTTTCCCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCCHHHHHH
Confidence            99999999999999999432     23677888999999999999999999999999999   899997 9999999999


Q ss_pred             hhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhhccCCCchhhhHHHH
Q 048253          183 AVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       183 ~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~~~~~~~~~~i~~~L  248 (323)
                      ..|+.                 +++++|+++| ++++.+|..|.||+++|+.    .++.+++++|
T Consensus       160 ~~~~~-----------------~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~----~~~~~~~~~L  203 (236)
T 1ikn_D          160 DLQNP-----------------DLVSLLLKCG-ADVNRVTYQGYSPYQLTWG----RPSTRIQQQL  203 (236)
T ss_dssp             HTTCH-----------------HHHHHHHTTT-CCSCCCCTTCCCGGGGCTT----SSCHHHHHHH
T ss_pred             HcCCH-----------------HHHHHHHHcC-CCCCcccCCCCCHHHHHHc----cCchHHHHHH
Confidence            99999                 9999999998 9999999999999999999    9999999998

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=4.7e-38  Score=272.91  Aligned_cols=209  Identities=20%  Similarity=0.165  Sum_probs=170.7

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhcc----Cccccccc-cCCCCCCCHHHHHHHc---CCHHHHHHHHHhCCCc------ccc
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQ----DQLIIGRV-GVNCLSEFPLHAAALL---GHVDFEGEIRRQKPEL------AGE   66 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~----~~~~~~~~-~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~------~~~   66 (323)
                      |+||||.|++.|+.++|+.|++.    +.++++.. ..|..|.||||+|+..   |+.+++++|++++++.      ++.
T Consensus        13 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~   92 (273)
T 2pnn_A           13 DRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNA   92 (273)
T ss_dssp             CHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTC
T ss_pred             cchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhc
Confidence            67999999999999999999874    33332211 2366799999999987   9999999999997642      122


Q ss_pred             ----cCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCC--------------CC-cHHHHHHHhCCHHHHHHHHHh-
Q 048253           67 ----LDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDL--------------DG-SPLHLAAMKGRIDVLEELFRT-  126 (323)
Q Consensus        67 ----~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~--------------~g-t~L~~A~~~g~~~~v~~Ll~~-  126 (323)
                          +|..|+||||+|++.|+.+++++|+++|+++ +.++.              .| ||||+|+..|+.+++++|++. 
T Consensus        93 ~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  171 (273)
T 2pnn_A           93 SYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNS  171 (273)
T ss_dssp             CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCS
T ss_pred             ccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence                5678999999999999999999999999998 66665              68 999999999999999999996 


Q ss_pred             -CCCcccccccccccHHHHHHhhCc---------hhHHHHHHhCCCCCCCCc-------ccccCCCcHHHHHHhhcchhh
Q 048253          127 -RPLAASATMIWGETILHLCVKHNQ---------LDALKFLLDNMDDPQFLN-------AEDDYGMTITQLAVAVKLCFQ  189 (323)
Q Consensus       127 -~~~~~~~~~~~g~t~Lh~A~~~g~---------~~~v~~Ll~~g~~~~~~~-------~~d~~g~t~Lh~A~~~~~~~~  189 (323)
                       .+++++.+|..|+||||+|+..|+         .+++++|+++|++   ++       .+|..|+||||+|+..|+.  
T Consensus       172 ~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~---~n~~~~~~~~~d~~g~TpL~~A~~~g~~--  246 (273)
T 2pnn_A          172 WQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAK---LHPTLKLEEITNRKGLTPLALAASSGKI--  246 (273)
T ss_dssp             SCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH---HCTTCCGGGCCCTTSCCHHHHHHHTTCH--
T ss_pred             cCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhh---cccccccccccCCCCCCHHHHHHHhChH--
Confidence             689999999999999999999998         7999999999987   65       5899999999999999999  


Q ss_pred             hHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhh
Q 048253          190 NLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALD  230 (323)
Q Consensus       190 ~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~  230 (323)
                                     +++++|+++|..|+......+.+|-+
T Consensus       247 ---------------~iv~~Ll~~ga~dp~~~~~~~~~~~~  272 (273)
T 2pnn_A          247 ---------------GVLAYILQREIHEPECRHAAAHHHHH  272 (273)
T ss_dssp             ---------------HHHHHHHHHHTC--------------
T ss_pred             ---------------HHHHHHHHCCCCCchhhhhhhhhccC
Confidence                           99999999993388888887777654

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.4e-37  Score=266.39  Aligned_cols=177  Identities=22%  Similarity=0.215  Sum_probs=147.4

Q ss_pred             CCcHHHHHHHhCCHH-HHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHH
Q 048253            1 MKSMLYEAALKGCEP-TLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIAS   79 (323)
Q Consensus         1 g~t~L~~A~~~g~~~-~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~   79 (323)
                      |.||||.|+..+..+ ++++|++.|.+++..   |.+|.||||+|+..|+.+++++|++.++++ +.++..|.||+|+|+
T Consensus        52 ~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~---d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~  127 (269)
T 4b93_B           52 FCHPLCQCPKCAPAQKRLAKVPASGLGVNVT---SQDGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLAC  127 (269)
T ss_dssp             -----------------------CCCCTTCC---CTTSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHHCCCCCCCc---CCCCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCcccccc
Confidence            468999999988764 889999999887444   778999999999999999999999999998 889999999999999


Q ss_pred             hcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHH
Q 048253           80 QKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLL  158 (323)
Q Consensus        80 ~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll  158 (323)
                      ..++.+++++|++.|+++ +.+|..| ||||+|+..|+.+++++|++ .+++++..+..|+||||+|+..|+.+++++|+
T Consensus       128 ~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~~A~~~g~~~~v~~Ll~-~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll  205 (269)
T 4b93_B          128 QQGHFQVVKCLLDSNAKP-NKKDLSGNTPLIYACSGGHHELVALLLQ-HGASINASNNKGNTALHEAVIEKHVFVVELLL  205 (269)
T ss_dssp             HHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCGGGHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred             ccChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHH-CCCCCCccccCCCcHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999 8899999 99999999999999999999 89999999999999999999999999999999


Q ss_pred             hCCCCCCCCcccccCCCcHHHHHHhhcc
Q 048253          159 DNMDDPQFLNAEDDYGMTITQLAVAVKL  186 (323)
Q Consensus       159 ~~g~~~~~~~~~d~~g~t~Lh~A~~~~~  186 (323)
                      ++|++   ++.+|.+|+||||+|++.++
T Consensus       206 ~~Gad---~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          206 LHGAS---VQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             HTTCC---SCCCCTTSCCSGGGSCTTCH
T ss_pred             HCCCC---CCCcCCCCCCHHHHHHhCCc
Confidence            99999   99999999999999987664

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=4.1e-36  Score=241.97  Aligned_cols=158  Identities=26%  Similarity=0.278  Sum_probs=115.8

Q ss_pred             CHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCH
Q 048253           39 FPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRI  117 (323)
Q Consensus        39 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~  117 (323)
                      ++|+.||+.|+.++|++|+++|+++ +.+|.+|+||||+|+..++.+++++|++.|+++ +.++..| ||||+|+..|+.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~~   83 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHK   83 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCCH
Confidence            3577777777777777777777776 777777777777777777777777777777777 6677777 777777777777


Q ss_pred             HHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHH
Q 048253          118 DVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEE  197 (323)
Q Consensus       118 ~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~  197 (323)
                      +++++|++ .+++++.+|.+|+||||+|+..|+.+++++|+++|++   ++.+|.+|+||||+|+..|+.          
T Consensus        84 ~~v~~Ll~-~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad---~~~~d~~G~TpL~~A~~~g~~----------  149 (169)
T 4gpm_A           84 EVVKLLIS-KGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD---VNTSDSDGRTPLDLAREHGNE----------  149 (169)
T ss_dssp             HHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCH----------
T ss_pred             HHHHHHHH-CcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCCCCHHHHHHHcCCH----------
Confidence            77777777 6777777777777777777777777777777777777   777777777777777777777          


Q ss_pred             HhhcchHHHHHHHhhcccccccc
Q 048253          198 YCHSKWGYVIRFLTTRTMIEVNA  220 (323)
Q Consensus       198 ~~~~~~~~~v~~Ll~~g~~~~~~  220 (323)
                             +++++|+++| ++++.
T Consensus       150 -------~iv~~Ll~~G-A~ie~  164 (169)
T 4gpm_A          150 -------EVVKLLEKQG-GWLEH  164 (169)
T ss_dssp             -------HHHHHHHTC-------
T ss_pred             -------HHHHHHHHCC-CCcCC
Confidence                   7777777777 66653

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=1e-36  Score=261.92  Aligned_cols=194  Identities=21%  Similarity=0.152  Sum_probs=171.0

Q ss_pred             CCCCHHHHHHHcCCHH----HHHHHHHhCCCcccc----cCCCCCcHHHHHHhc---CCHHHHHHHHhcCCccccc----
Q 048253           36 LSEFPLHAAALLGHVD----FEGEIRRQKPELAGE----LDSNQFSALHIASQK---VHVDKIKALLQVNPAWCFA----  100 (323)
Q Consensus        36 ~g~t~Lh~A~~~g~~~----~v~~Ll~~~~~~~~~----~~~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~~~~----  100 (323)
                      .|+||||.|+..|+.+    ++++|++.+.++ +.    +|..|+||||+|+..   |+.+++++|++.|+++...    
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i-~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~   79 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYL-TDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV   79 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCT-TSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhc
Confidence            3889999999999997    667788899988 66    899999999999999   9999999999998876321    


Q ss_pred             ------cCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccc-------------cccHHHHHHhhCchhHHHHHHh-
Q 048253          101 ------GDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIW-------------GETILHLCVKHNQLDALKFLLD-  159 (323)
Q Consensus       101 ------~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-------------g~t~Lh~A~~~g~~~~v~~Ll~-  159 (323)
                            ++..| ||||+|+..|+.+++++|++ .+++++..+..             |+||||+|+..|+.+++++|++ 
T Consensus        80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~  158 (256)
T 2etb_A           80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVE-NGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLEN  158 (256)
T ss_dssp             GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred             ccccccccccCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence                  24678 99999999999999999999 78999998876             9999999999999999999999 


Q ss_pred             --CCCCCCCCcccccCCCcHHHHHHh--hcchhhhHHHHHHHHhhcchHHHHHHHhhcccccc-------cccccCCCch
Q 048253          160 --NMDDPQFLNAEDDYGMTITQLAVA--VKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEV-------NALNANGFMA  228 (323)
Q Consensus       160 --~g~~~~~~~~~d~~g~t~Lh~A~~--~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~-------~~~d~~g~tp  228 (323)
                        +|++   ++.+|.+|+||||+|+.  .++.  +..+++        .+++++|+++| +++       +.+|..|+||
T Consensus       159 ~~~ga~---~n~~d~~g~TpLh~A~~~~~~~~--~~~~~~--------~~iv~~Ll~~g-a~~~~~~~~~~~~d~~g~tp  224 (256)
T 2etb_A          159 PHQPAS---LEATDSLGNTVLHALVMIADNSP--ENSALV--------IHMYDGLLQMG-ARLCPTVQLEEISNHQGLTP  224 (256)
T ss_dssp             SSCCCC---TTCCCTTSCCHHHHHHHHCCSCH--HHHHHH--------HHHHHHHHHHH-HHHSTTCCGGGCCCTTSCCH
T ss_pred             cccCCC---cCccCCCCCCHHHHHHHcccCCc--hhhHHH--------HHHHHHHHHcC-CCcccccccccccCCCCCCH
Confidence              8988   99999999999999998  5666  111110        02999999998 899       9999999999


Q ss_pred             hhhhhhccCCCchhhhHHHHh
Q 048253          229 LDTLAQSKRDKKDWEIEDWKM  249 (323)
Q Consensus       229 l~~A~~~~~~~~~~~i~~~L~  249 (323)
                      ||+|++    .++.+++++|-
T Consensus       225 L~~A~~----~g~~~~v~~Ll  241 (256)
T 2etb_A          225 LKLAAK----EGKIEIFRHIL  241 (256)
T ss_dssp             HHHHHH----TTCHHHHHHHH
T ss_pred             HHHHHH----hCCHHHHHHHH
Confidence            999999    99999999993

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.3e-35  Score=239.04  Aligned_cols=155  Identities=26%  Similarity=0.303  Sum_probs=146.3

Q ss_pred             cHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcC
Q 048253            3 SMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKV   82 (323)
Q Consensus         3 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g   82 (323)
                      ++|+.||+.|+.++|+.|++.|++++.   +|..|.||||+|+..++.+++++|+++++++ +.+|.+|+||||+|++.|
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~---~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g   81 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNA---SDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENG   81 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTC---CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCC---cCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcC
Confidence            579999999999999999999998754   4778999999999999999999999999998 999999999999999999


Q ss_pred             CHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCC
Q 048253           83 HVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNM  161 (323)
Q Consensus        83 ~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g  161 (323)
                      +.+++++|+++|+++ +.+|..| ||||+|+..|+.+++++|++ .+++++.+|.+|+||||+|+..|+.+++++|+++|
T Consensus        82 ~~~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G  159 (169)
T 4gpm_A           82 HKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLIS-KGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQG  159 (169)
T ss_dssp             CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            999999999999999 8899999 99999999999999999999 89999999999999999999999999999999999


Q ss_pred             CC
Q 048253          162 DD  163 (323)
Q Consensus       162 ~~  163 (323)
                      ++
T Consensus       160 A~  161 (169)
T 4gpm_A          160 GW  161 (169)
T ss_dssp             --
T ss_pred             CC
Confidence            98

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=1.6e-36  Score=270.26  Aligned_cols=198  Identities=16%  Similarity=0.070  Sum_probs=167.1

Q ss_pred             HHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCC
Q 048253            4 MLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVH   83 (323)
Q Consensus         4 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~   83 (323)
                      .+|.|+..+..++++.|++.+.+++..  .|..|.||||+|+..|+.++|++|+++|+++ +.+|..|+||||+|+..|+
T Consensus       100 ~~~~a~~~~~~~~~~~l~~~g~dvn~~--~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~  176 (327)
T 1sw6_A          100 QQHVSFDSLLQEVNDAFPNTQLNLNIP--VDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVN  176 (327)
T ss_dssp             ----CHHHHHHHHHHHCTTSCCCSCSC--CSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSH
T ss_pred             hhHHHHHhhHHHHHHHHHhcCCCcccc--cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhcc
Confidence            357788888899999999999887551  3777999999999999999999999999998 8999999999999999998


Q ss_pred             ---HHHHHHHHhcC-CccccccCCCC-cHHHHHHH----hCCHHHHHHHHHhC-------------------CCcccccc
Q 048253           84 ---VDKIKALLQVN-PAWCFAGDLDG-SPLHLAAM----KGRIDVLEELFRTR-------------------PLAASATM  135 (323)
Q Consensus        84 ---~~~v~~Ll~~~-~~~~~~~~~~g-t~L~~A~~----~g~~~~v~~Ll~~~-------------------~~~~~~~~  135 (323)
                         .++++.|++.+ +++ +.++..| ||||+|+.    .|+.+++++|++..                   +.+++..+
T Consensus       177 ~~~~~~~~~ll~~~~~~~-~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~  255 (327)
T 1sw6_A          177 NYDSGTFEALLDYLYPCL-ILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKN  255 (327)
T ss_dssp             HHHTTCHHHHHHHHGGGG-GEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC------------
T ss_pred             cccHHHHHHHHHhhhccc-cCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCccccc
Confidence               78888888887 555 8899999 99999999    89999999999842                   78899999


Q ss_pred             cccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhccc
Q 048253          136 IWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTM  215 (323)
Q Consensus       136 ~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~  215 (323)
                      ..|+||||.|+.      +++|+++  +   +|.+|.+|+||||+|+..|+.                 ++|++|+++| 
T Consensus       256 ~~g~t~L~~a~~------~~~Ll~~--~---~n~~d~~G~TpLh~A~~~g~~-----------------~~v~~Ll~~G-  306 (327)
T 1sw6_A          256 GERKDSILENLD------LKWIIAN--M---LNAQDSNGDTCLNIAARLGNI-----------------SIVDALLDYG-  306 (327)
T ss_dssp             ----CHHHHHCS------HHHHHHH--T---TTCCCTTSCCHHHHHHHHCCH-----------------HHHHHHHHTT-
T ss_pred             ccCCChhHHHHH------HHHHHHh--C---CCCCCCCCCCHHHHHHHcCCH-----------------HHHHHHHHcC-
Confidence            999999999996      8999997  3   889999999999999999999                 9999999998 


Q ss_pred             ccccccccCCCchhhhhhh
Q 048253          216 IEVNALNANGFMALDTLAQ  234 (323)
Q Consensus       216 ~~~~~~d~~g~tpl~~A~~  234 (323)
                      ++++.+|.+|+||||+|++
T Consensus       307 ad~~~~d~~G~TpL~~A~~  325 (327)
T 1sw6_A          307 ADPFIANKSGLRPVDFGAG  325 (327)
T ss_dssp             CCTTCCCTTSCCGGGGTCC
T ss_pred             CCCcccCCCCCCHHHHHHh
Confidence            9999999999999999987

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.7e-35  Score=259.77  Aligned_cols=217  Identities=20%  Similarity=0.151  Sum_probs=190.4

Q ss_pred             HHHHhCCHHHHHHHhccCccccccc------cCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHh
Q 048253            7 EAALKGCEPTLLELLQQDQLIIGRV------GVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQ   80 (323)
Q Consensus         7 ~A~~~g~~~~v~~Ll~~~~~~~~~~------~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~   80 (323)
                      .++..++.+.++.++..........      ..+..|.||||.||..|+.+++++|+++++++ +..|..|.||||+|+.
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   82 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACI   82 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBCTTCCBHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHH
Confidence            5678888888888888765532211      12345789999999999999999999999997 8899999999999999


Q ss_pred             cCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHh
Q 048253           81 KVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLD  159 (323)
Q Consensus        81 ~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~  159 (323)
                      .|+.+++++|+++|+++ +.++..| ||||+|+..|+.+++++|++ .+.+++..|..|.||||+|+..++.+++++++.
T Consensus        83 ~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~  160 (299)
T 1s70_B           83 DDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLIS-QGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVN  160 (299)
T ss_dssp             TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHh-CCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHh
Confidence            99999999999999999 8889999 99999999999999999999 789999999999999999999999999988775


Q ss_pred             C-CCCC-----------------------CCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhccc
Q 048253          160 N-MDDP-----------------------QFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTM  215 (323)
Q Consensus       160 ~-g~~~-----------------------~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~  215 (323)
                      . +.+.                       ......+..|.||||+|+..|+.                 +++++|+++| 
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~-----------------~~v~~Ll~~g-  222 (299)
T 1s70_B          161 RQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYT-----------------EVLKLLIQAR-  222 (299)
T ss_dssp             HHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCH-----------------HHHHHHHTTT-
T ss_pred             hcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcH-----------------HHHHHHHHcC-
Confidence            3 2220                       01233567899999999999999                 9999999998 


Q ss_pred             ccccccccCCCchhhhhhhccCCCchhhhHHHH
Q 048253          216 IEVNALNANGFMALDTLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       216 ~~~~~~d~~g~tpl~~A~~~~~~~~~~~i~~~L  248 (323)
                      ++++.+|..|.||||+|+.    .++.+++++|
T Consensus       223 ~d~~~~d~~g~tpL~~A~~----~~~~~~v~~L  251 (299)
T 1s70_B          223 YDVNIKDYDGWTPLHAAAH----WGKEEACRIL  251 (299)
T ss_dssp             CCTTCCCTTCCCHHHHHHH----TTCHHHHHHH
T ss_pred             CCCCCcCCCCCcHHHHHHh----cCCHHHHHHH
Confidence            8999999999999999999    9999999998

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=2.6e-36  Score=259.89  Aligned_cols=196  Identities=18%  Similarity=0.168  Sum_probs=170.8

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhc----cCccccccc-cCCCCCCCHHHHHH---HcCCHHHHHHHHHhCCCc---------
Q 048253            1 MKSMLYEAALKGCEPTLLELLQ----QDQLIIGRV-GVNCLSEFPLHAAA---LLGHVDFEGEIRRQKPEL---------   63 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~-~~~~~g~t~Lh~A~---~~g~~~~v~~Ll~~~~~~---------   63 (323)
                      |+|+||.|++.|+.+.|+.|++    .+.+++... ..|..|.||||+|+   ..|+.+++++|++.+++.         
T Consensus         5 ~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~   84 (260)
T 3jxi_A            5 NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINS   84 (260)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTC
T ss_pred             hHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcc
Confidence            5799999999999996555555    887765443 23467999999999   679999999999987532         


Q ss_pred             -ccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccC--------------CCC-cHHHHHHHhCCHHHHHHHHHh-
Q 048253           64 -AGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGD--------------LDG-SPLHLAAMKGRIDVLEELFRT-  126 (323)
Q Consensus        64 -~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~--------------~~g-t~L~~A~~~g~~~~v~~Ll~~-  126 (323)
                       .+..|..|+||||+|+..|+.+++++|+++|+++ +.++              ..| ||||+|+..|+.+++++|++. 
T Consensus        85 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  163 (260)
T 3jxi_A           85 PFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENG  163 (260)
T ss_dssp             CBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred             cccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence             2445668999999999999999999999999999 6666              578 999999999999999999995 


Q ss_pred             -CCCcccccccccccHHHHHHhhCc---------hhHHHHHHhCCCCCCCC-------cccccCCCcHHHHHHhhcchhh
Q 048253          127 -RPLAASATMIWGETILHLCVKHNQ---------LDALKFLLDNMDDPQFL-------NAEDDYGMTITQLAVAVKLCFQ  189 (323)
Q Consensus       127 -~~~~~~~~~~~g~t~Lh~A~~~g~---------~~~v~~Ll~~g~~~~~~-------~~~d~~g~t~Lh~A~~~~~~~~  189 (323)
                       .+++++.+|..|+||||+|+..++         .+++++|+++|++   +       +.+|..|+||||+|+..|+.  
T Consensus       164 ~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~---~~~~~~~~~~~d~~g~tpL~~A~~~g~~--  238 (260)
T 3jxi_A          164 HKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAK---LFPDTNLEALLNNDGLSPLMMAAKTGKI--  238 (260)
T ss_dssp             SCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHH---HCTTCCGGGCCCTTSCCHHHHHHHTTCH--
T ss_pred             ccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcc---cccccchhhcccCCCCCHHHHHHHcCCH--
Confidence             689999999999999999998887         7999999999987   5       67999999999999999999  


Q ss_pred             hHHHHHHHHhhcchHHHHHHHhhcccccc
Q 048253          190 NLVELVEEYCHSKWGYVIRFLTTRTMIEV  218 (323)
Q Consensus       190 ~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~  218 (323)
                                     +++++|+++| .+.
T Consensus       239 ---------------~~v~~Ll~~g-~~~  251 (260)
T 3jxi_A          239 ---------------GIFQHIIRRE-IAD  251 (260)
T ss_dssp             ---------------HHHHHHHHHH-HHH
T ss_pred             ---------------HHHHHHHHhC-CCc
Confidence                           9999999998 444

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=6.2e-35  Score=247.40  Aligned_cols=192  Identities=20%  Similarity=0.207  Sum_probs=176.3

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHh
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQ   80 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~   80 (323)
                      |.||||.|+..|+.+++++|++.+++.+..  .+..|.||||+|+..|+.+++++|++.++++ +.++..|.||||+|+.
T Consensus        42 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~  118 (240)
T 3eu9_A           42 NVTLLHWAAINNRIDLVKYYISKGAIVDQL--GGDLNSTPLHWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQ  118 (240)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--BTTTTBCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCcchhh--cCCcCCChhHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHH
Confidence            679999999999999999999999876544  2445999999999999999999999999998 8899999999999999


Q ss_pred             cCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCC-HHHHHHHHHhCCCccccccc-ccccHHHHHHhhCchhHHHHH
Q 048253           81 KVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGR-IDVLEELFRTRPLAASATMI-WGETILHLCVKHNQLDALKFL  157 (323)
Q Consensus        81 ~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~-~~~v~~Ll~~~~~~~~~~~~-~g~t~Lh~A~~~g~~~~v~~L  157 (323)
                      .|+.+++++|+++|+++ ..++..| ||||+|+..++ .+++++|++ .+.+++..+. .|.||||+|+..|+.+++++|
T Consensus       119 ~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~L~~-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  196 (240)
T 3eu9_A          119 FGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVDPTRLLLT-FNVSVNLGDKYHKNTALHWAVLAGNTTVISLL  196 (240)
T ss_dssp             TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCSSTTHHHHHH-TTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             cCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhCChHHHHHHHHh-cCCCcchhhccCCCcHHHHHHHcCCHHHHHHH
Confidence            99999999999999998 8889999 99999997776 889999999 8888988887 899999999999999999999


Q ss_pred             HhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccc
Q 048253          158 LDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEV  218 (323)
Q Consensus       158 l~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~  218 (323)
                      +++|++   ++.+|..|.||||+|+..++.                 +++++|++.+ .+.
T Consensus       197 l~~g~~---~~~~~~~g~t~l~~A~~~~~~-----------------~~v~~L~~~~-~~~  236 (240)
T 3eu9_A          197 LEAGAN---VDAQNIKGESALDLAKQRKNV-----------------WMINHLQEAR-QAK  236 (240)
T ss_dssp             HHHTCC---TTCBCTTSCBHHHHHHHTTCH-----------------HHHHHHHHHC----
T ss_pred             HHcCCC---CCCcCCCCCCHHHHHHHcCcH-----------------HHHHHHHHhh-hcc
Confidence            999999   899999999999999999999                 9999999987 443

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=1.2e-35  Score=257.71  Aligned_cols=199  Identities=20%  Similarity=0.172  Sum_probs=169.9

Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHh----CCCccc---ccCCCCCcHHHHHHhc---CCHHHHHHHHhcCCccc----
Q 048253           33 VNCLSEFPLHAAALLGHVDFEGEIRRQ----KPELAG---ELDSNQFSALHIASQK---VHVDKIKALLQVNPAWC----   98 (323)
Q Consensus        33 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~----~~~~~~---~~~~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~~----   98 (323)
                      .|..|.||||+|+..|+.++|+.|++.    +.++.+   ..|..|+||||+|+..   |+.+++++|++.|++..    
T Consensus         9 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~   88 (273)
T 2pnn_A            9 PRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQ   88 (273)
T ss_dssp             --CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHH
T ss_pred             CCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhH
Confidence            477799999999999999999998874    444311   4588999999999986   99999999999987531    


Q ss_pred             --cc----cCCCC-cHHHHHHHhCCHHHHHHHHHhCCCccccccc--------------ccccHHHHHHhhCchhHHHHH
Q 048253           99 --FA----GDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMI--------------WGETILHLCVKHNQLDALKFL  157 (323)
Q Consensus        99 --~~----~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~--------------~g~t~Lh~A~~~g~~~~v~~L  157 (323)
                        +.    ++..| ||||+|+..|+.+++++|++ .+++++..+.              .|+||||+|+..|+.+++++|
T Consensus        89 ~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  167 (273)
T 2pnn_A           89 FVNASYTDSYYKGQTALHIAIERRNMTLVTLLVE-NGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFL  167 (273)
T ss_dssp             HHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHH
T ss_pred             HhhcccccccCCCCCHHHHHHHcCCHHHHHHHHH-CCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence              21    45688 99999999999999999999 7899999887              799999999999999999999


Q ss_pred             Hh---CCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhccccccc-------ccccCCCc
Q 048253          158 LD---NMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVN-------ALNANGFM  227 (323)
Q Consensus       158 l~---~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~-------~~d~~g~t  227 (323)
                      ++   +|++   ++.+|.+|+||||+|+..++......+++        .+++++|+++| ++++       .+|..|.|
T Consensus       168 l~~~~~gad---~~~~d~~g~tpLh~A~~~~~~~~~~~~~~--------~~~v~~Ll~~g-a~~n~~~~~~~~~d~~g~T  235 (273)
T 2pnn_A          168 LQNSWQPAD---ISARDSVGNTVLHALVEVADNTVDNTKFV--------TSMYNEILILG-AKLHPTLKLEEITNRKGLT  235 (273)
T ss_dssp             HHCSSCCCC---TTCCCTTSCCHHHHHHHHCCSCHHHHHHH--------HHHHHHHHHHH-HHHCTTCCGGGCCCTTSCC
T ss_pred             HhcccCCCC---ceeeCCCCCcHHHHHHHccCcchhHHHHH--------HHHHHHHHHhh-hhcccccccccccCCCCCC
Confidence            99   8888   99999999999999999887321222221        18999999998 8996       58999999


Q ss_pred             hhhhhhhccCCCchhhhHHHH
Q 048253          228 ALDTLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       228 pl~~A~~~~~~~~~~~i~~~L  248 (323)
                      |||+|++    .++.+++++|
T Consensus       236 pL~~A~~----~g~~~iv~~L  252 (273)
T 2pnn_A          236 PLALAAS----SGKIGVLAYI  252 (273)
T ss_dssp             HHHHHHH----TTCHHHHHHH
T ss_pred             HHHHHHH----hChHHHHHHH
Confidence            9999999    9999999998

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=4.6e-35  Score=252.10  Aligned_cols=198  Identities=21%  Similarity=0.191  Sum_probs=169.2

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHH----HHhCCCcccccC----CCCCcHHHHHH---hcCCHHHHHHHHhcCCccc----
Q 048253           34 NCLSEFPLHAAALLGHVDFEGEI----RRQKPELAGELD----SNQFSALHIAS---QKVHVDKIKALLQVNPAWC----   98 (323)
Q Consensus        34 ~~~g~t~Lh~A~~~g~~~~v~~L----l~~~~~~~~~~~----~~g~tpL~~A~---~~g~~~~v~~Ll~~~~~~~----   98 (323)
                      +..|+|+||.|+..|+.+.++.|    ++.+.++ +..+    ..|+||||+|+   +.|+.+++++|++.|++..    
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~-~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~   80 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRL-TDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE   80 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCT-TSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc-chhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh
Confidence            45699999999999999955544    4588887 5444    77999999999   7899999999999886421    


Q ss_pred             ------cccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccc--------------cccccHHHHHHhhCchhHHHHH
Q 048253           99 ------FAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATM--------------IWGETILHLCVKHNQLDALKFL  157 (323)
Q Consensus        99 ------~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~--------------~~g~t~Lh~A~~~g~~~~v~~L  157 (323)
                            ...+..| ||||+|+..|+.+++++|++ .+++++..+              ..|+||||+|+..|+.+++++|
T Consensus        81 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  159 (260)
T 3jxi_A           81 FINSPFRDVYYRGQTALHIAIERRCKHYVELLVE-KGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL  159 (260)
T ss_dssp             HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHH
T ss_pred             hhcccccccccCCCCHHHHHHHcCCHHHHHHHHh-CCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence                  3344578 99999999999999999999 789999988              5899999999999999999999


Q ss_pred             Hh---CCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccc-------cccccCCCc
Q 048253          158 LD---NMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEV-------NALNANGFM  227 (323)
Q Consensus       158 l~---~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~-------~~~d~~g~t  227 (323)
                      ++   +|++   ++.+|..|+||||+|+..++......+.+.        +++++|+++| +++       +.+|..|.|
T Consensus       160 l~~~~~ga~---~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~--------~~v~~Ll~~g-a~~~~~~~~~~~~d~~g~t  227 (260)
T 3jxi_A          160 TENGHKQAD---LRRQDSRGNTVLHALVAIADNTRENTKFVT--------KMYDLLLIKC-AKLFPDTNLEALLNNDGLS  227 (260)
T ss_dssp             HHCSSCCCC---TTCCCTTSCCHHHHHHHHCCSSHHHHHHHH--------HHHHHHHHHH-HHHCTTCCGGGCCCTTSCC
T ss_pred             HhccccCCC---CcccCCCCCcHHHHHHHhccCchhHHHHHH--------HHHHHHHHhC-cccccccchhhcccCCCCC
Confidence            99   8888   999999999999999988773222222211        8999999998 898       789999999


Q ss_pred             hhhhhhhccCCCchhhhHHHHh
Q 048253          228 ALDTLAQSKRDKKDWEIEDWKM  249 (323)
Q Consensus       228 pl~~A~~~~~~~~~~~i~~~L~  249 (323)
                      |||+|++    .++.+++++|-
T Consensus       228 pL~~A~~----~g~~~~v~~Ll  245 (260)
T 3jxi_A          228 PLMMAAK----TGKIGIFQHII  245 (260)
T ss_dssp             HHHHHHH----TTCHHHHHHHH
T ss_pred             HHHHHHH----cCCHHHHHHHH
Confidence            9999999    99999999983

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=100.00  E-value=8.3e-35  Score=253.08  Aligned_cols=191  Identities=15%  Similarity=0.124  Sum_probs=176.1

Q ss_pred             CcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHH--
Q 048253            2 KSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIAS--   79 (323)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~--   79 (323)
                      ++++|.|+..|+.+.++.+++...+. ..+..|..|.||||+|+..|+.+++++|++.++..++..|..|+||||+|+  
T Consensus        77 ~~~l~~a~~~~~~~~~~~l~~~~~~~-~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~  155 (276)
T 4hbd_A           77 RSDAHPELVRRHLVTFRAMSARLLDY-VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA  155 (276)
T ss_dssp             STTCCHHHHHHHHHHHHHHCHHHHHH-HHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhh-cCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence            57889999999999999999887662 234457889999999999999999999999998445999999999999999  


Q ss_pred             ---hcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHH
Q 048253           80 ---QKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALK  155 (323)
Q Consensus        80 ---~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~  155 (323)
                         ..++.+++++|++.|... ...+..| ||||+|+..|+.+++++|++ .+++++.+|..|+||||+|+..|+.++++
T Consensus       156 ~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~-~gad~n~~d~~G~TpLh~A~~~g~~~iv~  233 (276)
T 4hbd_A          156 TLKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLA-CEADVNVQDDDGSTALMCACEHGHKEIAG  233 (276)
T ss_dssp             CCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHCCCHHHHH
Confidence               678899999999999887 7788889 99999999999999999999 89999999999999999999999999999


Q ss_pred             HHHh-CCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhccc
Q 048253          156 FLLD-NMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTM  215 (323)
Q Consensus       156 ~Ll~-~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~  215 (323)
                      +|++ .|++   ++.+|..|+||||+|+..|+.                 +++++|+++.+
T Consensus       234 ~Ll~~~gad---~~~~d~~g~TpL~~A~~~g~~-----------------~iv~~Ll~~~~  274 (276)
T 4hbd_A          234 LLLAVPSCD---ISLTDRDGSTALMVALDAGQS-----------------EIASMLYSRMN  274 (276)
T ss_dssp             HHHTSTTCC---TTCCCTTSCCHHHHHHHHTCH-----------------HHHHHHHHHCC
T ss_pred             HHHhcCCCC---CcCcCCCCCCHHHHHHHcCCH-----------------HHHHHHHhccC
Confidence            9999 8988   999999999999999999999                 99999999863

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=2.7e-34  Score=231.91  Aligned_cols=169  Identities=24%  Similarity=0.244  Sum_probs=131.9

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhC
Q 048253           37 SEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKG  115 (323)
Q Consensus        37 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g  115 (323)
                      +.||||.|+..|+.+++++|++.++..++.+|..|+||||+|+..|+.+++++|+++|+++ +.++..| ||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTGG   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHCC
Confidence            4578888888888888888888877755777888888888888888888888888888877 6677777 8888888888


Q ss_pred             CHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHH
Q 048253          116 RIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELV  195 (323)
Q Consensus       116 ~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l  195 (323)
                      +.+++++|++ .+.+++..|..|+||||+|+..|+.+++++|+++|++   ++.+|..|.||||+|+..++.        
T Consensus        81 ~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~--------  148 (172)
T 3v30_A           81 YTDIVGLLLE-RDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGAD---LTTEADSGYTPMDLAVALGYR--------  148 (172)
T ss_dssp             CHHHHHHHHT-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCH--------
T ss_pred             CHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCCCCHHHHHHHhCcH--------
Confidence            8888888887 6777888888888888888888888888888888877   788888888888888888888        


Q ss_pred             HHHhhcchHHHHHHHhhcccccccccccCCCch
Q 048253          196 EEYCHSKWGYVIRFLTTRTMIEVNALNANGFMA  228 (323)
Q Consensus       196 ~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tp  228 (323)
                               +++++|++++ +++...+..|.||
T Consensus       149 ---------~~~~~L~~~~-~~~~~~~~~~~~p  171 (172)
T 3v30_A          149 ---------KVQQVIENHI-LKLFQSNLVPADP  171 (172)
T ss_dssp             ---------HHHHHHHHHH-HHHSCC-------
T ss_pred             ---------HHHHHHHHHH-HHHhcccCCCCCC
Confidence                     8888888887 7888888877776

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.1e-36  Score=254.93  Aligned_cols=201  Identities=15%  Similarity=0.040  Sum_probs=174.0

Q ss_pred             HHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCc
Q 048253           17 LLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPA   96 (323)
Q Consensus        17 v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~   96 (323)
                      |+.|++++++.+.....+..+.||||+|+..|+.+++++|+++++++ +.+|..|+||||+|+..|+.+++++|++.|++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~   79 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLITAGAN   79 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            46788888887666666777889999999999999999999999988 89999999999999999999999999999999


Q ss_pred             cccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccc-cccccHHHHH--HhhCchhHHHHHHhCCCCCCCCccccc
Q 048253           97 WCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATM-IWGETILHLC--VKHNQLDALKFLLDNMDDPQFLNAEDD  172 (323)
Q Consensus        97 ~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~t~Lh~A--~~~g~~~~v~~Ll~~g~~~~~~~~~d~  172 (323)
                      + +.++..| ||||+|+..|+.+++++|++ .+++++..+ ..|+||||+|  +..|+.+++++|+++|++   ++.+|.
T Consensus        80 ~-n~~d~~g~tpLh~A~~~g~~~~v~~Ll~-~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~---~~~~~~  154 (229)
T 2vge_A           80 V-NSPDSHGWTPLHCAASCNDTVICMALVQ-HGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS---MGLMNS  154 (229)
T ss_dssp             T-TCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH---TTTSGG
T ss_pred             C-CCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC---cccccC
Confidence            9 8889999 99999999999999999999 788999886 6999999999  999999999999999998   899999


Q ss_pred             CCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhccccc--ccccccCCCchhhhhhhccCCCchhhhHHHH
Q 048253          173 YGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIE--VNALNANGFMALDTLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       173 ~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~--~~~~d~~g~tpl~~A~~~~~~~~~~~i~~~L  248 (323)
                      .|.||++.++.....                    ++|++.| ++  ++.+|.+|+||||+|++    .++.++++.+
T Consensus       155 ~~~~~l~~~~~~~~~--------------------~~ll~~g-a~~~~~~~d~~G~TpL~~A~~----~g~~~~v~~~  207 (229)
T 2vge_A          155 GAVYALWDYSAEFGD--------------------ELSFREG-ESVTVLRRDGPEETDWWWAAL----HGQEGYVPRN  207 (229)
T ss_dssp             GEEEESSCBCCSSTT--------------------BCCBCTT-CEEEEEESSCTTCSSEEEEEE----TTEEEEEEGG
T ss_pred             CchHHHHHHhhcccc--------------------ccCcccc-ccccccccCCCcccHHHHHHH----cCCcceeehh
Confidence            999999976554333                    6778877 67  77889999999999999    8888888764

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=2.1e-33  Score=230.83  Aligned_cols=159  Identities=22%  Similarity=0.210  Sum_probs=152.8

Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHH
Q 048253           33 VNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLA  111 (323)
Q Consensus        33 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A  111 (323)
                      +|..|.||||+|+..|+.+++++|+++++++ +.+|..|+||||+|+..|+.+++++|++.|+++ +.++..| ||||+|
T Consensus        31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A  108 (192)
T 2rfm_A           31 RDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLMWS  108 (192)
T ss_dssp             CCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHH
Confidence            4777999999999999999999999999987 889999999999999999999999999999998 8889999 999999


Q ss_pred             HHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhH
Q 048253          112 AMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNL  191 (323)
Q Consensus       112 ~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~  191 (323)
                      +..|+.+++++|++ .+.+++..|..|+||||+|+..|+.+++++|+++|++   ++.+|..|.||||+|+..++.    
T Consensus       109 ~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~----  180 (192)
T 2rfm_A          109 IIFGYSEMSYFLLE-HGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGAD---ISARDLTGLTAEASARIFGRQ----  180 (192)
T ss_dssp             HHHTCHHHHHHHHH-TTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---TTCBCTTSCBHHHHHHHTTCH----
T ss_pred             HHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHHhCcH----
Confidence            99999999999999 7899999999999999999999999999999999999   999999999999999999999    


Q ss_pred             HHHHHHHhhcchHHHHHHHhhcc
Q 048253          192 VELVEEYCHSKWGYVIRFLTTRT  214 (323)
Q Consensus       192 ~~~l~~~~~~~~~~~v~~Ll~~g  214 (323)
                                   +++++|++++
T Consensus       181 -------------~~v~~Ll~~~  190 (192)
T 2rfm_A          181 -------------EVIKIFTEVR  190 (192)
T ss_dssp             -------------HHHHHHHHHH
T ss_pred             -------------HHHHHHHhcc
Confidence                         9999999876

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=2.3e-33  Score=226.48  Aligned_cols=168  Identities=18%  Similarity=0.123  Sum_probs=150.9

Q ss_pred             CcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhc
Q 048253            2 KSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQK   81 (323)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~   81 (323)
                      .||||.|+..|+.+++++|++.++...  ...|..|.||||+|+..|+.+++++|+++++++ +.+|..|+||||+|+..
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   79 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKGDNLV--NKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTG   79 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTCSGGG--GCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHT
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcCcccc--cCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHC
Confidence            589999999999999999999987732  334777999999999999999999999999998 89999999999999999


Q ss_pred             CCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhC
Q 048253           82 VHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDN  160 (323)
Q Consensus        82 g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~  160 (323)
                      |+.+++++|+++|+++ +.++..| ||||+|+..|+.+++++|++ .+++++..|..|+||||+|+..|+.+++++|+++
T Consensus        80 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  157 (172)
T 3v30_A           80 GYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLA-RGADLTTEADSGYTPMDLAVALGYRKVQQVIENH  157 (172)
T ss_dssp             TCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHH
Confidence            9999999999999998 8889999 99999999999999999999 7899999999999999999999999999999999


Q ss_pred             CCCCCCCcccccCCCcH
Q 048253          161 MDDPQFLNAEDDYGMTI  177 (323)
Q Consensus       161 g~~~~~~~~~d~~g~t~  177 (323)
                      +++   +..++..|.||
T Consensus       158 ~~~---~~~~~~~~~~p  171 (172)
T 3v30_A          158 ILK---LFQSNLVPADP  171 (172)
T ss_dssp             HHH---HSCC-------
T ss_pred             HHH---HhcccCCCCCC
Confidence            987   77777777776

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=100.00  E-value=6.3e-34  Score=247.51  Aligned_cols=185  Identities=23%  Similarity=0.235  Sum_probs=172.7

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCCC-cccccCCCCCcHHHHHHhcCCHHHHHHHHhcCC-ccccccCCCC-cHHHHHH-
Q 048253           37 SEFPLHAAALLGHVDFEGEIRRQKPE-LAGELDSNQFSALHIASQKVHVDKIKALLQVNP-AWCFAGDLDG-SPLHLAA-  112 (323)
Q Consensus        37 g~t~Lh~A~~~g~~~~v~~Ll~~~~~-~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~g-t~L~~A~-  112 (323)
                      ..+++|.|+..|+.+.++.+++.+.+ .++.+|.+|+||||+|+..|+.+++++|++.|+ ++ +..+..| ||||+|+ 
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~-~~~~~~g~tpL~~a~~  154 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKV-DKQNRAGYSPIMLTAL  154 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHGGG
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcC-CCCCCCCCCHHHHHHH
Confidence            57889999999999999999987655 238899999999999999999999999999998 65 8899999 9999999 


Q ss_pred             ----HhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchh
Q 048253          113 ----MKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCF  188 (323)
Q Consensus       113 ----~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~  188 (323)
                          ..++.+++++|++ .+...+..+..|+||||+|+..|+.+++++|+++|++   +|.+|.+|+||||+|+..|+. 
T Consensus       155 ~~~~~~~~~~~v~~Ll~-~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad---~n~~d~~G~TpLh~A~~~g~~-  229 (276)
T 4hbd_A          155 ATLKTQDDIETVLQLFR-LGNINAKASQAGQTALMLAVSHGRVDVVKALLACEAD---VNVQDDDGSTALMCACEHGHK-  229 (276)
T ss_dssp             CCCCSHHHHHHHHHHHH-HSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCH-
T ss_pred             HHhhhhhhHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC---CCCCCCCCCCHHHHHHHCCCH-
Confidence                6788999999999 6788888899999999999999999999999999999   999999999999999999999 


Q ss_pred             hhHHHHHHHHhhcchHHHHHHHhh-cccccccccccCCCchhhhhhhccCCCchhhhHHHH
Q 048253          189 QNLVELVEEYCHSKWGYVIRFLTT-RTMIEVNALNANGFMALDTLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       189 ~~~~~~l~~~~~~~~~~~v~~Ll~-~g~~~~~~~d~~g~tpl~~A~~~~~~~~~~~i~~~L  248 (323)
                                      +++++|++ .| ++++.+|..|+||||+|++    .++.+++++|
T Consensus       230 ----------------~iv~~Ll~~~g-ad~~~~d~~g~TpL~~A~~----~g~~~iv~~L  269 (276)
T 4hbd_A          230 ----------------EIAGLLLAVPS-CDISLTDRDGSTALMVALD----AGQSEIASML  269 (276)
T ss_dssp             ----------------HHHHHHHTSTT-CCTTCCCTTSCCHHHHHHH----HTCHHHHHHH
T ss_pred             ----------------HHHHHHHhcCC-CCCcCcCCCCCCHHHHHHH----cCCHHHHHHH
Confidence                            99999999 56 9999999999999999999    9999999998

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=1e-32  Score=221.57  Aligned_cols=156  Identities=23%  Similarity=0.240  Sum_probs=131.0

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHh
Q 048253           36 LSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMK  114 (323)
Q Consensus        36 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~  114 (323)
                      .|.||||.|+..|+.+++++|++.+.++ +.+|..|+||||+|+..|+.+++++|+++|+++ +..+..| ||||+|+..
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   79 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSK   79 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHc
Confidence            3778888888888888888888888776 778888888888888888888888888888887 6677778 888888888


Q ss_pred             CCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHH
Q 048253          115 GRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVEL  194 (323)
Q Consensus       115 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~  194 (323)
                      |+.+++++|++ .+.+++..|..|+||||+|+..|+.+++++|+++|++   ++.+|..|.||||+|+..|+.       
T Consensus        80 ~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~~-------  148 (167)
T 3v31_A           80 GYTDIVKMLLD-CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD---PTIETDSGYNSMDLAVALGYR-------  148 (167)
T ss_dssp             TCHHHHHHHHH-HTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCH-------
T ss_pred             CCHHHHHHHHH-CCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCcH-------
Confidence            88888888888 6777888888888888888888888888888888887   788888888888888888888       


Q ss_pred             HHHHhhcchHHHHHHHhhcc
Q 048253          195 VEEYCHSKWGYVIRFLTTRT  214 (323)
Q Consensus       195 l~~~~~~~~~~~v~~Ll~~g  214 (323)
                                +++++|++++
T Consensus       149 ----------~~~~~L~~~~  158 (167)
T 3v31_A          149 ----------SVQQVIESHL  158 (167)
T ss_dssp             ----------HHHHHHHHHH
T ss_pred             ----------HHHHHHHHHH
Confidence                      8888888776

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=1.1e-32  Score=220.03  Aligned_cols=156  Identities=22%  Similarity=0.266  Sum_probs=142.5

Q ss_pred             CcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhc
Q 048253            2 KSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQK   81 (323)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~   81 (323)
                      .||||.|+..|+.+++++|++.+.+++.   .|..|.||||+|+. |+.+++++|+++++++ +.+|..|+||||+|++.
T Consensus         6 ~~~L~~A~~~g~~~~v~~Ll~~~~~~~~---~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   80 (162)
T 1ihb_A            6 GNELASAAARGDLEQLTSLLQNNVNVNA---QNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARA   80 (162)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTTSCCCTTC---CCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred             hhHHHHHHHcCCHHHHHHHHhCCCCccc---cCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence            5899999999999999999999887643   47779999999999 9999999999999988 88999999999999999


Q ss_pred             CCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhC
Q 048253           82 VHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDN  160 (323)
Q Consensus        82 g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~  160 (323)
                      |+.+++++|+++|+++ +.++..| ||||+|+..|+.+++++|++.....++..|..|+||||+|+..|+.+++++|+++
T Consensus        81 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  159 (162)
T 1ihb_A           81 GFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN  159 (162)
T ss_dssp             TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHh
Confidence            9999999999999998 8889999 9999999999999999999955555789999999999999999999999999999


Q ss_pred             CCC
Q 048253          161 MDD  163 (323)
Q Consensus       161 g~~  163 (323)
                      |++
T Consensus       160 GAd  162 (162)
T 1ihb_A          160 GAG  162 (162)
T ss_dssp             C--
T ss_pred             CCC
Confidence            875

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=2.6e-32  Score=219.77  Aligned_cols=158  Identities=25%  Similarity=0.330  Sum_probs=143.2

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHH
Q 048253           34 NCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAA  112 (323)
Q Consensus        34 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~  112 (323)
                      ...+.++||.|+..|+.+++++|++++.++ +.+|..|.||||+|+..|+.+++++|+++|+++ +.++..| ||||+|+
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~   88 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAA   88 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHH
Confidence            345788999999999999999999999887 888999999999999999999999999999988 7788889 9999999


Q ss_pred             HhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHH
Q 048253          113 MKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLV  192 (323)
Q Consensus       113 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~  192 (323)
                      ..|+.+++++|++ .+.+++..|..|+||||+|+..|+.+++++|+++|++   ++.+|..|.||||+|+..++.     
T Consensus        89 ~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~~-----  159 (169)
T 2y1l_E           89 LFGHLEIVEVLLK-NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD---VNAQDKFGKTAFDISIDNGNE-----  159 (169)
T ss_dssp             HTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCH-----
T ss_pred             HcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHhCCH-----
Confidence            9999999999999 7888999999999999999999999999999999988   889999999999999999999     


Q ss_pred             HHHHHHhhcchHHHHHHHhhcc
Q 048253          193 ELVEEYCHSKWGYVIRFLTTRT  214 (323)
Q Consensus       193 ~~l~~~~~~~~~~~v~~Ll~~g  214 (323)
                                  +++++|++.|
T Consensus       160 ------------~~~~~L~~~G  169 (169)
T 2y1l_E          160 ------------DLAEILQKLN  169 (169)
T ss_dssp             ------------HHHHHHHTC-
T ss_pred             ------------HHHHHHHHcC
Confidence                        9999998765

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=1.2e-32  Score=219.77  Aligned_cols=158  Identities=19%  Similarity=0.170  Sum_probs=148.5

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHh
Q 048253           36 LSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMK  114 (323)
Q Consensus        36 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~  114 (323)
                      ...||||.|+..|+.+++++|++++.++ +.+|..|+||||+|+. |+.+++++|++.|+++ +.++..| ||||+|+..
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   80 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARA   80 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCc-cccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence            3679999999999999999999999988 8899999999999999 9999999999999998 8889999 999999999


Q ss_pred             CCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHH
Q 048253          115 GRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVEL  194 (323)
Q Consensus       115 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~  194 (323)
                      |+.+++++|++ .+.+++.+|..|+||||+|+..|+.+++++|+++|++.  ++.+|..|.||||+|+..++.       
T Consensus        81 ~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~~g~t~l~~A~~~~~~-------  150 (162)
T 1ihb_A           81 GFLDTLQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN--VGHRNHKGDTACDLARLYGRN-------  150 (162)
T ss_dssp             TCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC--TTCCCTTSCCHHHHHHHTTCH-------
T ss_pred             CCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCC--CCCcCCCCCcHHHHHHHcCCH-------
Confidence            99999999999 78999999999999999999999999999999999873  588999999999999999999       


Q ss_pred             HHHHhhcchHHHHHHHhhccccc
Q 048253          195 VEEYCHSKWGYVIRFLTTRTMIE  217 (323)
Q Consensus       195 l~~~~~~~~~~~v~~Ll~~g~~~  217 (323)
                                +++++|+++| +|
T Consensus       151 ----------~~~~~Ll~~G-Ad  162 (162)
T 1ihb_A          151 ----------EVVSLMQANG-AG  162 (162)
T ss_dssp             ----------HHHHHHHHTC---
T ss_pred             ----------HHHHHHHHhC-CC
Confidence                      9999999988 54

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=100.00  E-value=2.3e-32  Score=222.17  Aligned_cols=167  Identities=17%  Similarity=0.098  Sum_probs=142.5

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHh
Q 048253           36 LSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMK  114 (323)
Q Consensus        36 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~  114 (323)
                      ++.++||.|+..|+.+++++|++.+...++.+|..|+||||+|+..|+.+++++|++.|+++ +.++..| ||||+|+..
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASH   82 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHc
Confidence            47788999999999999999998866555888888999999999999999999999988888 7778888 999999999


Q ss_pred             CCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHH
Q 048253          115 GRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVEL  194 (323)
Q Consensus       115 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~  194 (323)
                      |+.+++++|++ .+.+++..|..|+||||+|+..|+.+++++|+++|++   ++.+|..|.||||+|+..++.       
T Consensus        83 ~~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpl~~A~~~~~~-------  151 (179)
T 3f6q_A           83 GHRDIVQKLLQ-YKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGAL---VSICNKYGEMPVDKAKAPLRE-------  151 (179)
T ss_dssp             TCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---SSBCCTTSCCGGGGSCHHHHH-------
T ss_pred             CCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---cchhccCCCCcHHHHHHHHHH-------
Confidence            99999999988 7888888888899999999999999999999998888   888888999999999888888       


Q ss_pred             HHHHhhcchHHHHHHHhhcccccccccccCC
Q 048253          195 VEEYCHSKWGYVIRFLTTRTMIEVNALNANG  225 (323)
Q Consensus       195 l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g  225 (323)
                                +++++|++.| ++++..+.++
T Consensus       152 ----------~~~~~L~~~g-~~~~~~~~~~  171 (179)
T 3f6q_A          152 ----------LLRERAEKMG-QNLNRIPYKD  171 (179)
T ss_dssp             ----------HHHHHHHHTT-CCCSCBCCCC
T ss_pred             ----------HHHHHHHHhh-cCcccCCccc
Confidence                      8899999888 7887766544

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=3.4e-32  Score=218.52  Aligned_cols=157  Identities=18%  Similarity=0.138  Sum_probs=148.2

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHh
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQ   80 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~   80 (323)
                      |+||||.|+..|+.+++++|++.+.+++.   .|..|.||||+|+..|+.+++++|+++++++ +.+|..|.||||+|+.
T Consensus         3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   78 (167)
T 3v31_A            3 NSLSVHQLAAQGEMLYLATRIEQENVINH---TDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACS   78 (167)
T ss_dssp             TCCCHHHHHHTTCHHHHHHHHHHSSCTTC---CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred             CcchHHHHHHCCCHHHHHHHHHcCCCcCC---CCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHH
Confidence            68999999999999999999999877543   4778999999999999999999999999998 8899999999999999


Q ss_pred             cCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHh
Q 048253           81 KVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLD  159 (323)
Q Consensus        81 ~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~  159 (323)
                      .|+.+++++|+++|+++ +.++..| ||||+|+..|+.+++++|++ .+.+++..|..|+||||+|+..|+.+++++|++
T Consensus        79 ~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  156 (167)
T 3v31_A           79 KGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLE-SGADPTIETDSGYNSMDLAVALGYRSVQQVIES  156 (167)
T ss_dssp             HTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            99999999999999999 8889999 99999999999999999999 899999999999999999999999999999999


Q ss_pred             CCCC
Q 048253          160 NMDD  163 (323)
Q Consensus       160 ~g~~  163 (323)
                      ++++
T Consensus       157 ~~~~  160 (167)
T 3v31_A          157 HLLK  160 (167)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8644

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=5.9e-32  Score=217.74  Aligned_cols=154  Identities=24%  Similarity=0.371  Sum_probs=145.4

Q ss_pred             CcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhc
Q 048253            2 KSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQK   81 (323)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~   81 (323)
                      .|+|+.|++.|+.++|++|++.+.+++.   .|..|.||||+|+..|+.+++++|+++++++ +.+|..|+||||+|+..
T Consensus        15 ~~~l~~A~~~g~~~~v~~Ll~~g~~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   90 (169)
T 2y1l_E           15 GKKLLEAARAGRDDEVRILMANGADVNA---EDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAALF   90 (169)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCTTC---CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             cchHHHHHHcCCHHHHHHHHHCCCCCCC---CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHc
Confidence            5799999999999999999999987644   3777999999999999999999999999998 88999999999999999


Q ss_pred             CCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhC
Q 048253           82 VHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDN  160 (323)
Q Consensus        82 g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~  160 (323)
                      |+.+++++|+++|+++ +.++..| ||||+|+..|+.+++++|++ .+.+++..|..|.||||+|+..|+.+++++|++.
T Consensus        91 ~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  168 (169)
T 2y1l_E           91 GHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLK-NGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL  168 (169)
T ss_dssp             TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             CCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence            9999999999999998 8889999 99999999999999999999 7899999999999999999999999999999987


Q ss_pred             C
Q 048253          161 M  161 (323)
Q Consensus       161 g  161 (323)
                      |
T Consensus       169 G  169 (169)
T 2y1l_E          169 N  169 (169)
T ss_dssp             -
T ss_pred             C
Confidence            5

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=3.1e-32  Score=223.88  Aligned_cols=158  Identities=18%  Similarity=0.143  Sum_probs=151.9

Q ss_pred             ccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHH
Q 048253           64 AGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETIL  142 (323)
Q Consensus        64 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L  142 (323)
                      .+.+|..|+||||+|+..|+.+++++|++.|+++ +.++..| ||||+|+..|+.+++++|++ .+.+++..|..|+|||
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L  105 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLS-KGSNVNTKDFSGKTPL  105 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-HTCCTTCCCTTSCCHH
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCcHH
Confidence            3678999999999999999999999999999998 7888899 99999999999999999999 6888999999999999


Q ss_pred             HHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccc
Q 048253          143 HLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALN  222 (323)
Q Consensus       143 h~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d  222 (323)
                      |+|+..|+.+++++|+++|++   ++.+|..|.||||+|+..++.                 +++++|+++| ++++.+|
T Consensus       106 ~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~-----------------~~v~~Ll~~g-a~~~~~~  164 (192)
T 2rfm_A          106 MWSIIFGYSEMSYFLLEHGAN---VNDRNLEGETPLIVASKYGRS-----------------EIVKKLLELG-ADISARD  164 (192)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCC---SSCCCTTCCCHHHHHHHHTCH-----------------HHHHHHHHTT-CCTTCBC
T ss_pred             HHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHcCCH-----------------HHHHHHHHCC-CCCCCcC
Confidence            999999999999999999998   999999999999999999999                 9999999998 8999999


Q ss_pred             cCCCchhhhhhhccCCCchhhhHHHH
Q 048253          223 ANGFMALDTLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       223 ~~g~tpl~~A~~~~~~~~~~~i~~~L  248 (323)
                      ..|.||+++|+.    .++.+++++|
T Consensus       165 ~~g~t~l~~A~~----~~~~~~v~~L  186 (192)
T 2rfm_A          165 LTGLTAEASARI----FGRQEVIKIF  186 (192)
T ss_dssp             TTSCBHHHHHHH----TTCHHHHHHH
T ss_pred             CCCCCHHHHHHH----hCcHHHHHHH
Confidence            999999999999    9999999998

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=6.4e-33  Score=246.98  Aligned_cols=169  Identities=12%  Similarity=-0.019  Sum_probs=143.9

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCC---HHHHHHHHHhCCCcccccCCCCCcHHHH
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGH---VDFEGEIRRQKPELAGELDSNQFSALHI   77 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~---~~~v~~Ll~~~~~~~~~~~~~g~tpL~~   77 (323)
                      |+||||+|+..|+.++|++|++++++++.   .|..|.||||+|+..|+   .++++.|++.+...++.+|..|+||||+
T Consensus       131 g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~---~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~  207 (327)
T 1sw6_A          131 GNTPLHWLTSIANLELVKHLVKHGSNRLY---GDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHH  207 (327)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTB---CCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCC---cCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHH
Confidence            78999999999999999999999998754   47789999999999999   7888888888744448999999999999


Q ss_pred             HHh----cCCHHHHHHHHhc--------------------CCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCccc
Q 048253           78 ASQ----KVHVDKIKALLQV--------------------NPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAAS  132 (323)
Q Consensus        78 A~~----~g~~~~v~~Ll~~--------------------~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~  132 (323)
                      |++    .|+.+++++|++.                    |+++ +.++..| ||||.|+.      +++|++.   +++
T Consensus       208 A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~-~~~~~~g~t~L~~a~~------~~~Ll~~---~~n  277 (327)
T 1sw6_A          208 IIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKP-NDKNGERKDSILENLD------LKWIIAN---MLN  277 (327)
T ss_dssp             HHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHCS------HHHHHHH---TTT
T ss_pred             HHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCc-ccccccCCChhHHHHH------HHHHHHh---CCC
Confidence            999    8999999999987                    7777 7788999 99999985      8999995   588


Q ss_pred             ccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhc
Q 048253          133 ATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVK  185 (323)
Q Consensus       133 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~  185 (323)
                      .+|..|+||||+|+..|+.+++++|+++|++   ++.+|.+|+||||+|++.|
T Consensus       278 ~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad---~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          278 AQDSNGDTCLNIAARLGNISIVDALLDYGAD---PFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             CCCTTSCCHHHHHHHHCCHHHHHHHHHTTCC---TTCCCTTSCCGGGGTCC--
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CcccCCCCCCHHHHHHhcC
Confidence            9999999999999999999999999999999   9999999999999998764

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.98  E-value=2.2e-31  Score=210.80  Aligned_cols=143  Identities=22%  Similarity=0.250  Sum_probs=87.9

Q ss_pred             CCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCC
Q 048253           38 EFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGR  116 (323)
Q Consensus        38 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~  116 (323)
                      .||||.|+..|+.+++++|++++++. + .+..|.||||+|+..|+.+++++|++.|+++ +.++..| ||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~   79 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTC
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCC-C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCh
Confidence            45566666666666666666665544 2 3555666666666666666666666666655 5555555 66666666666


Q ss_pred             HHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcch
Q 048253          117 IDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLC  187 (323)
Q Consensus       117 ~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~  187 (323)
                      .+++++|++ .+.+++..|..|+||||+|+..|+.+++++|+++|++   ++.+|..|.||||+|+..|+.
T Consensus        80 ~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~  146 (153)
T 1awc_B           80 ANIVEVLLK-HGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD---VHTQSKFCKTAFDISIDNGNE  146 (153)
T ss_dssp             HHHHHHHHT-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCCCCHHHHHHHcCCH
Confidence            666666666 5555666666666666666666666666666666665   566666666666666666666

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=5.5e-32  Score=216.86  Aligned_cols=158  Identities=23%  Similarity=0.255  Sum_probs=113.8

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHH
Q 048253           34 NCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAA  112 (323)
Q Consensus        34 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~  112 (323)
                      |..|.||||.|+..|+.+++++|++.+....+..+..|+||||+|+..|+.+++++|+++|+++ +.++..| ||||+|+
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~   83 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNAC   83 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHHH
Confidence            3446777777777777777777777555444666667777777777777777777777777776 6666777 7777777


Q ss_pred             HhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHH
Q 048253          113 MKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLV  192 (323)
Q Consensus       113 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~  192 (323)
                      ..|+.+++++|++ .+.+++..|..|+||||+|+..|+.+++++|+++|++   ++.+|.+|+||||+|+. ++.     
T Consensus        84 ~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~a~~-~~~-----  153 (165)
T 3twr_A           84 SYGHYEVAELLVK-HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD---PTKKNRDGNTPLDLVKD-GDT-----  153 (165)
T ss_dssp             HTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCTGGGSCT-TCH-----
T ss_pred             HcCcHHHHHHHHh-CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CcccCCCCCChhHhHhc-CCh-----
Confidence            7777777777777 6677777777777777777777777777777777777   67777777777777655 666     


Q ss_pred             HHHHHHhhcchHHHHHHHhhcc
Q 048253          193 ELVEEYCHSKWGYVIRFLTTRT  214 (323)
Q Consensus       193 ~~l~~~~~~~~~~~v~~Ll~~g  214 (323)
                                  +++++|++.|
T Consensus       154 ------------~i~~~L~~~g  163 (165)
T 3twr_A          154 ------------DIQDLLRGDA  163 (165)
T ss_dssp             ------------HHHHHHHTC-
T ss_pred             ------------HHHHHHhhcc
Confidence                        7777777665

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=2.9e-31  Score=215.67  Aligned_cols=166  Identities=18%  Similarity=0.114  Sum_probs=151.6

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHh
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQ   80 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~   80 (323)
                      +.++||.|+..|+.++|++|++.++..  ....|..|.||||+|+..|+.+++++|+++++++ +.+|..|+||||+|+.
T Consensus         5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   81 (179)
T 3f6q_A            5 FMDDIFTQCREGNAVAVRLWLDNTEND--LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAAS   81 (179)
T ss_dssp             --CCHHHHHHHTCHHHHHHHHHCTTSC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHH
Confidence            358999999999999999999986542  2335778999999999999999999999999998 8899999999999999


Q ss_pred             cCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHh
Q 048253           81 KVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLD  159 (323)
Q Consensus        81 ~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~  159 (323)
                      .|+.+++++|+++|+++ +.++..| ||||+|+..|+.+++++|++ .+++++..|..|+||||+|+..++.+++++|++
T Consensus        82 ~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~  159 (179)
T 3f6q_A           82 HGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVA-NGALVSICNKYGEMPVDKAKAPLRELLRERAEK  159 (179)
T ss_dssp             TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCcchhccCCCCcHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999 8889999 99999999999999999999 889999999999999999999999999999999


Q ss_pred             CCCCCCCCcccccCC
Q 048253          160 NMDDPQFLNAEDDYG  174 (323)
Q Consensus       160 ~g~~~~~~~~~d~~g  174 (323)
                      +|++   ++..+..+
T Consensus       160 ~g~~---~~~~~~~~  171 (179)
T 3f6q_A          160 MGQN---LNRIPYKD  171 (179)
T ss_dssp             TTCC---CSCBCCCC
T ss_pred             hhcC---cccCCccc
Confidence            9998   66655443

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=3e-31  Score=209.96  Aligned_cols=149  Identities=21%  Similarity=0.257  Sum_probs=141.6

Q ss_pred             CcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhc
Q 048253            2 KSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQK   81 (323)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~   81 (323)
                      .|+|+.|++.|+.+++++|++.+++..    .+..|.||||+|+..|+.+++++|++++.++ +.+|..|+||||+|+..
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~----~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   77 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT----TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC----CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC----cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence            589999999999999999999998652    3677999999999999999999999999998 88999999999999999


Q ss_pred             CCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHH
Q 048253           82 VHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFL  157 (323)
Q Consensus        82 g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~L  157 (323)
                      |+.+++++|+++|+++ +.++..| ||||+|+..|+.+++++|++ .+++++.+|..|+||||+|+..|+.+++++|
T Consensus        78 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           78 GHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIK-YGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ChHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            9999999999999999 8889999 99999999999999999999 7999999999999999999999999999987

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=2e-31  Score=213.55  Aligned_cols=156  Identities=22%  Similarity=0.221  Sum_probs=143.0

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHh
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQ   80 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~   80 (323)
                      |+|+||.|++.|+.+++++|++.++.  .....+..|.||||+|+..|+.+++++|++++.++ +.+|..|+||||+|+.
T Consensus         8 ~~~~l~~A~~~g~~~~v~~ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   84 (165)
T 3twr_A            8 ADRQLLEAAKAGDVETVKKLCTVQSV--NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACS   84 (165)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHCCTTTT--TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             hhHHHHHHHHhCCHHHHHHHHHcCCC--CccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHHHH
Confidence            46899999999999999999997653  23345677999999999999999999999999998 8999999999999999


Q ss_pred             cCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHh
Q 048253           81 KVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLD  159 (323)
Q Consensus        81 ~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~  159 (323)
                      .|+.+++++|+++|+++ +.++..| ||||+|+..|+.+++++|++ .+.+++.+|..|+||||+|+. ++.+++++|++
T Consensus        85 ~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~  161 (165)
T 3twr_A           85 YGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQ-HGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRG  161 (165)
T ss_dssp             TTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHT
T ss_pred             cCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCChhHhHhc-CChHHHHHHhh
Confidence            99999999999999999 8889999 99999999999999999999 789999999999999999877 89999999999


Q ss_pred             CCC
Q 048253          160 NMD  162 (323)
Q Consensus       160 ~g~  162 (323)
                      +|+
T Consensus       162 ~gA  164 (165)
T 3twr_A          162 DAA  164 (165)
T ss_dssp             C--
T ss_pred             ccc
Confidence            875

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.97  E-value=1.7e-33  Score=239.63  Aligned_cols=207  Identities=20%  Similarity=0.169  Sum_probs=151.4

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHh
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQ   80 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~   80 (323)
                      |.||||.|++.|+.+.++.|++++.+++.    +..|.||||.|+..|+.+++++|+++++++ +.+|..|+||||+|+.
T Consensus         5 g~t~L~~a~~~~~~~~~~~ll~~g~~~~~----~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~   79 (239)
T 1ycs_B            5 GQVSLPPGKRTNLRKTGSERIAHGMRVKF----NPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVC   79 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHH
T ss_pred             ccccCchhhhhhhHHHHHHHhccCCCccc----CchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHH
Confidence            78999999999999999999999988632    456899999999999999999999999987 9999999999999999


Q ss_pred             cCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccc-cHHHHH--HhhCchhHHHH
Q 048253           81 KVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGE-TILHLC--VKHNQLDALKF  156 (323)
Q Consensus        81 ~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~-t~Lh~A--~~~g~~~~v~~  156 (323)
                      .|+.+++++|+++|+++ +.+|..| ||||+|+..|+.+++++|++ .+++++..+..|. ||||+|  +..|+.+++++
T Consensus        80 ~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~  157 (239)
T 1ycs_B           80 AGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVE-SGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF  157 (239)
T ss_dssp             HTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHH
T ss_pred             cCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCcceecCCCCcchHHHHHHhhhccHHHHHH
Confidence            99999999999999999 8899999 99999999999999999999 7899999998877 999999  88999999999


Q ss_pred             HHhCCCCCCCCccc------ccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhccccc------ccccccC
Q 048253          157 LLDNMDDPQFLNAE------DDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIE------VNALNAN  224 (323)
Q Consensus       157 Ll~~g~~~~~~~~~------d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~------~~~~d~~  224 (323)
                      |+++|++....+..      |..+.++++++...|..                   ++.|.+.+ .+      ....++.
T Consensus       158 Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~~-------------------i~vl~~~~-~~~~~Ww~~~~~~~~  217 (239)
T 1ycs_B          158 LYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGDC-------------------MTIIHRED-EDEIEWWWARLNDKE  217 (239)
T ss_dssp             HHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSCE-------------------EEECCCCT-TSCSSEEEEEETTEE
T ss_pred             HHHhhhcccccccceEEEEeccCCCCCCcccccCCCE-------------------EEEEEecC-CCCCCEEEEEECCcE
Confidence            99998873332222      77789999999887754                   34444433 22      2356788


Q ss_pred             CCchhhhhhh
Q 048253          225 GFMALDTLAQ  234 (323)
Q Consensus       225 g~tpl~~A~~  234 (323)
                      |.+|..+...
T Consensus       218 G~~P~~yv~~  227 (239)
T 1ycs_B          218 GYVPRNLLGL  227 (239)
T ss_dssp             EEEEGGGEEC
T ss_pred             EEeehHHeeE
Confidence            9999988765

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=5.2e-31  Score=209.09  Aligned_cols=143  Identities=24%  Similarity=0.214  Sum_probs=69.0

Q ss_pred             CCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCC
Q 048253           38 EFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGR  116 (323)
Q Consensus        38 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~  116 (323)
                      .||||.|+..|+.+++++|++......+.+|..|+||||+ +..|+.+++++|++.|+++ +.++..| ||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred             chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCc
Confidence            3444555555555555554444211124444445555554 4444555555555544444 4444444 55555555555


Q ss_pred             HHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcch
Q 048253          117 IDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLC  187 (323)
Q Consensus       117 ~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~  187 (323)
                      .+++++|++ .+.+++..|..|+||||+|+..|+.+++++|+++ ++   ++.+|.+|.||||+|+..|+.
T Consensus        81 ~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~---~~~~~~~g~t~l~~A~~~~~~  146 (156)
T 1bd8_A           81 LDTLKVLVE-HGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SD---LHRRDARGLTPLELALQRGAQ  146 (156)
T ss_dssp             HHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC---TTCCCTTSCCHHHHHHHSCCH
T ss_pred             HHHHHHHHH-cCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cC---CCCcCCCCCCHHHHHHHcCcH
Confidence            555555554 4444444444555555555555555555555544 33   444455555555555555554

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=8.3e-31  Score=207.90  Aligned_cols=153  Identities=22%  Similarity=0.258  Sum_probs=141.3

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHh
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQ   80 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~   80 (323)
                      |.||||.|+..|+.+++++|++. .. .+....|..|.||||+ +..|+.+++++|+++++++ +.+|..|+||||+|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~-~~-~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   77 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHR-EL-VHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAAR   77 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHT-TC-CCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             cchHHHHHHHhCCHHHHHHHHHh-hC-cCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHH
Confidence            46899999999999999999998 31 1223457789999999 9999999999999999998 8999999999999999


Q ss_pred             cCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHh
Q 048253           81 KVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLD  159 (323)
Q Consensus        81 ~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~  159 (323)
                      .|+.+++++|+++|+++ +.++..| ||||+|+..|+.+++++|++ . .+++..|..|+||||+|+..|+.+++++|++
T Consensus        78 ~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A           78 TGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAA-E-SDLHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             TTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHT-T-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             cCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHh-c-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            99999999999999998 8889999 99999999999999999999 5 8999999999999999999999999999997


Q ss_pred             C
Q 048253          160 N  160 (323)
Q Consensus       160 ~  160 (323)
                      +
T Consensus       155 ~  155 (156)
T 1bd8_A          155 H  155 (156)
T ss_dssp             T
T ss_pred             h
Confidence            5

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.97  E-value=2.7e-33  Score=252.84  Aligned_cols=226  Identities=15%  Similarity=0.081  Sum_probs=175.1

Q ss_pred             CcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc--ccccCCCCCcHHHHHH
Q 048253            2 KSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPEL--AGELDSNQFSALHIAS   79 (323)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~g~tpL~~A~   79 (323)
                      +||||.|++.|+.++|++|++.++........+..|.||||+|+..|+.++|++|++++++.  .+..+.+ +||||+|+
T Consensus        93 ~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa  171 (376)
T 2aja_A           93 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAA  171 (376)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHH
Confidence            58999999999999999999998732222223455889999999999999999999999752  1222333 99999999


Q ss_pred             hcCCHHHHHHHHhcCCccccc--cCCCC-cHHHHHH-HhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHH
Q 048253           80 QKVHVDKIKALLQVNPAWCFA--GDLDG-SPLHLAA-MKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALK  155 (323)
Q Consensus        80 ~~g~~~~v~~Ll~~~~~~~~~--~~~~g-t~L~~A~-~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~  155 (323)
                      +.|+.+++++|+++|+++ ..  .+..| ||||+|+ ..|+.+++++|++ .+.       .|.||||+|+.+|+.++++
T Consensus       172 ~~G~~eiv~~Ll~~ga~~-~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~-~ga-------~~~taL~~Aa~~g~~evv~  242 (376)
T 2aja_A          172 ENGHLHVLNRLCELAPTE-ATAMIQAENYYAFRWAAVGRGHHNVINFLLD-CPV-------MLAYAEIHEFEYGEKYVNP  242 (376)
T ss_dssp             HTTCHHHHHHHHHSCGGG-HHHHHHHHHHHHHHHHHSTTCCHHHHHHHTT-SHH-------HHHHHHHCTTTTTTTTHHH
T ss_pred             HCCCHHHHHHHHHcCCcc-chhccCCCCCCHHHHHHHHCCCHHHHHHHHh-CCC-------ccchHHHHHHHCCCHHHHH
Confidence            999999999999999997 44  77788 9999999 9999999999999 442       4899999999999999999


Q ss_pred             HHHhCCCCCCCCcccccCCCcHHHHHHhhcchh----------hhHHHHHHHHhhcchHHHHHHHhhccccc----cccc
Q 048253          156 FLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCF----------QNLVELVEEYCHSKWGYVIRFLTTRTMIE----VNAL  221 (323)
Q Consensus       156 ~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~----------~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~----~~~~  221 (323)
                      +|+++|++   ++.+|    ++++.|+..|+..          ..+.+.+...+.....+.+++|++.+.++    ....
T Consensus       243 lL~~~ga~---~~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~  315 (376)
T 2aja_A          243 FIARHVNR---LKEMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATI  315 (376)
T ss_dssp             HHHHHHHH---HHHHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSS
T ss_pred             HHHhcCcc---ccccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCC
Confidence            99999876   55544    4677777777651          01334455555555668888888754211    1222


Q ss_pred             ccCCCchhhhhhhccCCCchhhhHHHH
Q 048253          222 NANGFMALDTLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       222 d~~g~tpl~~A~~~~~~~~~~~i~~~L  248 (323)
                      .+.+.||+++|++    .|+.+++++|
T Consensus       316 ~n~~~~~L~~A~~----~g~~e~v~lL  338 (376)
T 2aja_A          316 PGDANELLRLALR----LGNQGACALL  338 (376)
T ss_dssp             TTCCCHHHHHHHH----HTCTTHHHHH
T ss_pred             CCCccHHHHHHHH----cCcHHHHHHH
Confidence            3456789999999    9999999999

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.97  E-value=6.8e-34  Score=240.53  Aligned_cols=176  Identities=16%  Similarity=0.004  Sum_probs=158.2

Q ss_pred             CcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhc
Q 048253            2 KSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQK   81 (323)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~   81 (323)
                      .||||.|+..|+.++|++|++.+++++.   .|..|.||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..
T Consensus        22 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~tpLh~A~~~   97 (229)
T 2vge_A           22 LVLLLDAALTGELEVVQQAVKEMNDPSQ---PNEEGITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTPLHCAASC   97 (229)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHSSCTTC---CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHT
T ss_pred             hHHHHHHHHcCCHHHHHHHHhcCCCCCC---CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHc
Confidence            5899999999999999999999987644   4778999999999999999999999999998 89999999999999999


Q ss_pred             CCHHHHHHHHhcCCcccccc-CCCC-cHHHHH--HHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHH
Q 048253           82 VHVDKIKALLQVNPAWCFAG-DLDG-SPLHLA--AMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFL  157 (323)
Q Consensus        82 g~~~~v~~Ll~~~~~~~~~~-~~~g-t~L~~A--~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~L  157 (323)
                      |+.+++++|++.|+++ +.+ +..| ||||+|  +..|+.+++++|++ .+++++..|..|.||++.++.....   ++|
T Consensus        98 g~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~-~ga~~~~~~~~~~~~l~~~~~~~~~---~~l  172 (229)
T 2vge_A           98 NDTVICMALVQHGAAI-FATTLSDGATAFEKCDPYREGYADCATYLAD-VEQSMGLMNSGAVYALWDYSAEFGD---ELS  172 (229)
T ss_dssp             TCHHHHHHHHTTTCCT-TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHH-HHHHTTTSGGGEEEESSCBCCSSTT---BCC
T ss_pred             CCHHHHHHHHHcCCCc-ccccCCCCCCHHHHHHHHhcChHHHHHHHHH-cCCCcccccCCchHHHHHHhhcccc---ccC
Confidence            9999999999999999 555 4689 999999  99999999999999 7889999999999999976665443   577


Q ss_pred             HhCCCCCCCCcccccCCCcHHHHHHhhcch
Q 048253          158 LDNMDDPQFLNAEDDYGMTITQLAVAVKLC  187 (323)
Q Consensus       158 l~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~  187 (323)
                      ++.|++. .++.+|.+|+||||+|+..|+.
T Consensus       173 l~~ga~~-~~~~~d~~G~TpL~~A~~~g~~  201 (229)
T 2vge_A          173 FREGESV-TVLRRDGPEETDWWWAALHGQE  201 (229)
T ss_dssp             BCTTCEE-EEEESSCTTCSSEEEEEETTEE
T ss_pred             ccccccc-cccccCCCcccHHHHHHHcCCc
Confidence            8888652 2677899999999999999999

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.97  E-value=8.9e-32  Score=229.00  Aligned_cols=174  Identities=14%  Similarity=0.069  Sum_probs=131.5

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHh
Q 048253           36 LSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMK  114 (323)
Q Consensus        36 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~  114 (323)
                      .|.||||.|+..|+.++++.|+++|.++ +. +..|.||||.|+..|+.+++++|++.|+++ +.++..| ||||+|+..
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~-~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~   80 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIAHGMRV-KF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCA   80 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHH
T ss_pred             cccccCchhhhhhhHHHHHHHhccCCCc-cc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHc
Confidence            4999999999999999999999999987 54 478999999999999999999999999998 8889999 999999999


Q ss_pred             CCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCC-cHHHHH--HhhcchhhhH
Q 048253          115 GRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGM-TITQLA--VAVKLCFQNL  191 (323)
Q Consensus       115 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~-t~Lh~A--~~~~~~~~~~  191 (323)
                      |+.+++++|++ .+++++..|..|+||||+|+..|+.+++++|+++|++   ++.+|..|. ||||+|  +..|+.    
T Consensus        81 g~~~~v~~Ll~-~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~~~~t~l~~a~~~~~g~~----  152 (239)
T 1ycs_B           81 GHTEIVKFLVQ-FGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAA---VFAMTYSDMQTAADKCEEMEEGYT----  152 (239)
T ss_dssp             TCHHHHHHHHH-HTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCSSSCCCHHHHCCSSSTTCC----
T ss_pred             CCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---cceecCCCCcchHHHHHHhhhccH----
Confidence            99999999999 6899999999999999999999999999999999999   899988877 999999  788889    


Q ss_pred             HHHHHHHhhcchHHHHHHHhhccccccccc---------ccCCCchhhhhhh
Q 048253          192 VELVEEYCHSKWGYVIRFLTTRTMIEVNAL---------NANGFMALDTLAQ  234 (323)
Q Consensus       192 ~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~---------d~~g~tpl~~A~~  234 (323)
                                   +++++|++++ ++++..         +..+.+|.+++.+
T Consensus       153 -------------~~~~~Ll~~~-a~~~~~~~~~~~al~d~~~~~~~eLa~~  190 (239)
T 1ycs_B          153 -------------QCSQFLYGVQ-EKMGIMNKGVIYALWDYEPQNDDELPMK  190 (239)
T ss_dssp             -------------CHHHHHHHHH-HHTTTTGGGEEEESSCBCCSSTTBCCBC
T ss_pred             -------------HHHHHHHHhh-hcccccccceEEEEeccCCCCCCccccc
Confidence                         9999999988 788766         5668888888877

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.96  E-value=6.4e-29  Score=203.07  Aligned_cols=162  Identities=11%  Similarity=0.036  Sum_probs=132.5

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCH----HHHHHHHhcCCccccccCCCC-cHHHHH
Q 048253           37 SEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHV----DKIKALLQVNPAWCFAGDLDG-SPLHLA  111 (323)
Q Consensus        37 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~g-t~L~~A  111 (323)
                      +.++|+.|++.|+.+.++.+++.+.+.  ..+..|+||||+|+..|+.    +++++|+++|+++ +.++..| ||||+|
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~a   82 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFPL   82 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHHH
Confidence            457788888888888888888776432  2236688888888888764    4788888888888 7778888 888888


Q ss_pred             HHhCC------HHHHHHHHHhCCCcccccccccc-cHHHHHHhhC-----chhHHHHHHh-CCCCCCCCcccccCCCcHH
Q 048253          112 AMKGR------IDVLEELFRTRPLAASATMIWGE-TILHLCVKHN-----QLDALKFLLD-NMDDPQFLNAEDDYGMTIT  178 (323)
Q Consensus       112 ~~~g~------~~~v~~Ll~~~~~~~~~~~~~g~-t~Lh~A~~~g-----~~~~v~~Ll~-~g~~~~~~~~~d~~g~t~L  178 (323)
                      +..++      .+++++|++ .+++++.+|..|+ ||||+|+..+     +.+++++|++ +|++   ++.+|..|.|||
T Consensus        83 ~~~~~~~~~~~~~iv~~Ll~-~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad---~~~~d~~G~TpL  158 (186)
T 3t8k_A           83 FQGGGNDITGTTELCKIFLE-KGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ---LLIKDKWGLTAL  158 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHH-TTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC---TTCCCTTSCCHH
T ss_pred             HHcCCcchhhHHHHHHHHHH-CCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC---CcccCCCCCCHH
Confidence            88876      578999999 8999999999999 9999999944     4569999999 9999   999999999999


Q ss_pred             HHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhccccccccccc
Q 048253          179 QLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNA  223 (323)
Q Consensus       179 h~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~  223 (323)
                      |+|+..++.                 ++|++|.+.. .+.+++++
T Consensus       159 ~~A~~~~~~-----------------~~v~~L~~~~-~~~~~~~~  185 (186)
T 3t8k_A          159 EFVKRCQKP-----------------IALKMMEDYI-KKYNLKEN  185 (186)
T ss_dssp             HHHHTTTCH-----------------HHHHHHHHHH-HHHTCCC-
T ss_pred             HHHHHcCCH-----------------HHHHHHHHHH-HHHhcccC
Confidence            999999999                 9999998876 46666553

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.96  E-value=8.1e-29  Score=196.69  Aligned_cols=138  Identities=17%  Similarity=0.136  Sum_probs=67.1

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-c-HHHHHH
Q 048253           35 CLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-S-PLHLAA  112 (323)
Q Consensus        35 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t-~L~~A~  112 (323)
                      ..|.||||+|+..|+.+++++|+++++++ +.+|..|+||||+|+ .|+.+++++|+++|+++ +.++..| | |||+|+
T Consensus        10 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~~A~   86 (156)
T 1bi7_B           10 EPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAA   86 (156)
T ss_dssp             CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHH
T ss_pred             ccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHH
Confidence            34555666666666666666655555554 555555555555553 55555555555555555 4455555 4 555555


Q ss_pred             HhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHH
Q 048253          113 MKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQ  179 (323)
Q Consensus       113 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh  179 (323)
                      ..|+.+++++|++ .+++++.+|..|+||||+|+..|+.+++++|+++|++   ++.+|..|.||.+
T Consensus        87 ~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~~~  149 (156)
T 1bi7_B           87 REGFLDTLVVLHR-AGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGG---TRGSNHARIDAAE  149 (156)
T ss_dssp             HHTCHHHHHHHHH-HTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred             HCCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCC---CCccCcCcCcccc
Confidence            5555555555555 3444555555555555555555555555555555544   4445555555444

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.95  E-value=8.7e-29  Score=196.50  Aligned_cols=138  Identities=17%  Similarity=0.109  Sum_probs=114.1

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCc-HHHHHH
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFS-ALHIAS   79 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t-pL~~A~   79 (323)
                      |.||||.|+..|+.++|++|++++.+++..   |..|.||||+|+ .|+.+++++|+++++++ +.+|..|+| |||+|+
T Consensus        12 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~---~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~~A~   86 (156)
T 1bi7_B           12 SADWLATAAARGRVEEVRALLEAGANPNAP---NSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAA   86 (156)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCC---CSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHH
T ss_pred             chHHHHHHHHcCCHHHHHHHHHcCCCCCCC---CCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHH
Confidence            689999999999999999999999876443   778999999996 99999999999999998 899999999 999999


Q ss_pred             hcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHH
Q 048253           80 QKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLC  145 (323)
Q Consensus        80 ~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A  145 (323)
                      +.|+.+++++|+++|+++ +.++..| ||||+|+..|+.+++++|++ .+++++..+..|.||.+.+
T Consensus        87 ~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           87 REGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRA-AAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSS-CC-----------------
T ss_pred             HCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCHHHHHHHHHH-cCCCCCccCcCcCcccccC
Confidence            999999999999999999 8889999 99999999999999999999 8999999999999998743

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=3.9e-28  Score=188.19  Aligned_cols=128  Identities=20%  Similarity=0.189  Sum_probs=120.7

Q ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCC-C-cHHH
Q 048253           32 GVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLD-G-SPLH  109 (323)
Q Consensus        32 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-g-t~L~  109 (323)
                      ..|..|.||||+|+..|+.+++++|+++++++ +.+|..|+||||+|+. |+.+++++|+++|+++ +.++.. | ||||
T Consensus         7 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~g~t~L~   83 (136)
T 1d9s_A            7 MLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPATLTRPVH   83 (136)
T ss_dssp             CCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTTTBCHHH
T ss_pred             CCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCCCCCHHH
Confidence            34777999999999999999999999999987 8899999999999999 9999999999999998 788888 8 9999


Q ss_pred             HHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCC
Q 048253          110 LAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDD  163 (323)
Q Consensus       110 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~  163 (323)
                      +|+..|+.+++++|++ .+.+++.+|..|+||||+|+..++.+++++|+++|++
T Consensus        84 ~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           84 DAAREGFLDTLVVLHR-AGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHTCHHHHHHHHH-TCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999999999999 8899999999999999999999999999999998875

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=4.3e-28  Score=187.95  Aligned_cols=132  Identities=21%  Similarity=0.209  Sum_probs=124.8

Q ss_pred             CCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccc-c
Q 048253           61 PELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIW-G  138 (323)
Q Consensus        61 ~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-g  138 (323)
                      +++ +.+|..|.||||+|++.|+.+++++|+++|+++ +.++..| ||||+|+. |+.+++++|++ .+.+++..|.. |
T Consensus         3 ~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~-~g~~~~~~~~~~g   78 (136)
T 1d9s_A            3 PGI-HMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLL-HGAEPNCADPATL   78 (136)
T ss_dssp             CCC-SCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHH-HTCCSSCCBTTTT
T ss_pred             CCc-cCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHH-CCCCCCCcCCCCC
Confidence            344 888999999999999999999999999999998 8889999 99999999 99999999999 78899999999 9


Q ss_pred             ccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhccccc
Q 048253          139 ETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIE  217 (323)
Q Consensus       139 ~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~  217 (323)
                      +||||+|+..|+.+++++|+++|++   ++.+|..|.||||+|+..++.                 +++++|+++| +|
T Consensus        79 ~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~tpl~~A~~~~~~-----------------~~~~~Ll~~G-ad  136 (136)
T 1d9s_A           79 TRPVHDAAREGFLDTLVVLHRAGAR---LDVCDAWGRLPVDLAEEQGHR-----------------DIARYLHAAT-GD  136 (136)
T ss_dssp             BCHHHHHHHHTCHHHHHHHHHTCCC---CCCCSSSSSCHHHHHHHHTCH-----------------HHHHHHHHHH-CC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHHHcCCH-----------------HHHHHHHHcC-CC
Confidence            9999999999999999999999999   999999999999999999999                 9999999987 54

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.95  E-value=3.4e-30  Score=232.54  Aligned_cols=196  Identities=14%  Similarity=0.145  Sum_probs=157.3

Q ss_pred             HHHHHHH-hCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc--ccccCCCCCcHHHHHHh
Q 048253            4 MLYEAAL-KGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPEL--AGELDSNQFSALHIASQ   80 (323)
Q Consensus         4 ~L~~A~~-~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~g~tpL~~A~~   80 (323)
                      +++.|.. .++.+.++++++++.+          ++||||+|+..|+.++|++|+++++..  .+..+..|.||||+|++
T Consensus        68 ~~~~a~~~~~~~~~~~~l~~~g~~----------~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~  137 (376)
T 2aja_A           68 CLYYAHYNRNAKQLWSDAHKKGIK----------SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAE  137 (376)
T ss_dssp             HHHHHHTTTTCTTHHHHHHHHTCC----------HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHcCCC----------cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHH
Confidence            5556655 4777788888776533          569999999999999999999998732  12345678899999999


Q ss_pred             cCCHHHHHHHHhcCCcccc-ccCCC-CcHHHHHHHhCCHHHHHHHHHhCCCcccc--cccccccHHHHHH-hhCchhHHH
Q 048253           81 KVHVDKIKALLQVNPAWCF-AGDLD-GSPLHLAAMKGRIDVLEELFRTRPLAASA--TMIWGETILHLCV-KHNQLDALK  155 (323)
Q Consensus        81 ~g~~~~v~~Ll~~~~~~~~-~~~~~-gt~L~~A~~~g~~~~v~~Ll~~~~~~~~~--~~~~g~t~Lh~A~-~~g~~~~v~  155 (323)
                      .|+.+++++|+++|+++.. ..+.. .||||+|+..|+.+++++|++ .+++++.  .|..|+||||+|+ .+|+.++++
T Consensus       138 ~G~~eiv~~Ll~~gad~~~~~i~~~~~TpLh~Aa~~G~~eiv~~Ll~-~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~  216 (376)
T 2aja_A          138 NGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCE-LAPTEATAMIQAENYYAFRWAAVGRGHHNVIN  216 (376)
T ss_dssp             TTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHH-SCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred             cCCHHHHHHHHhCCCCccccccCCCCCCHHHHHHHCCCHHHHHHHHH-cCCccchhccCCCCCCHHHHHHHHCCCHHHHH
Confidence            9999999999999975311 01122 399999999999999999999 7888877  8899999999999 999999999


Q ss_pred             HHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhhc
Q 048253          156 FLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQS  235 (323)
Q Consensus       156 ~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~~  235 (323)
                      +|++.|+          .|.||||+|+..|+.                 +++++|+++| ++++..+    ++++.|+. 
T Consensus       217 ~Ll~~ga----------~~~taL~~Aa~~g~~-----------------evv~lL~~~g-a~~~~~~----~~l~~A~~-  263 (376)
T 2aja_A          217 FLLDCPV----------MLAYAEIHEFEYGEK-----------------YVNPFIARHV-NRLKEMH----DAFKLSNP-  263 (376)
T ss_dssp             HHTTSHH----------HHHHHHHCTTTTTTT-----------------THHHHHHHHH-HHHHHHH----TTTTTTSS-
T ss_pred             HHHhCCC----------ccchHHHHHHHCCCH-----------------HHHHHHHhcC-ccccccc----HHHHHHHH-
Confidence            9999653          278999999999999                 9999999998 7887665    37788887 


Q ss_pred             cCCCchhhhHH
Q 048253          236 KRDKKDWEIED  246 (323)
Q Consensus       236 ~~~~~~~~i~~  246 (323)
                         .++.++++
T Consensus       264 ---~g~~~vv~  271 (376)
T 2aja_A          264 ---DGVFDLVT  271 (376)
T ss_dssp             ---SSCCCCSS
T ss_pred             ---CCChhhhc
Confidence               67666553

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.95  E-value=7e-28  Score=196.88  Aligned_cols=156  Identities=8%  Similarity=-0.012  Sum_probs=136.1

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCH----HHHHHHHHhCCCcccccccccccHHHHH
Q 048253           71 QFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRI----DVLEELFRTRPLAASATMIWGETILHLC  145 (323)
Q Consensus        71 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A  145 (323)
                      +.++|+.|++.|+.+.++.++..+.+.  ..+..| ||||+|+..|+.    +++++|++ .+++++.+|..|+||||+|
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~-~Gadvn~~d~~g~TpLh~a   82 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLIN-KGADIKSRTKEGTTLFFPL   82 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHH-TTCCSSCCCTTCCCTHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHH-CCCCCCCCCCCCCcHHHHH
Confidence            568999999999999999999887654  223678 999999999975    59999999 8999999999999999999


Q ss_pred             HhhCc------hhHHHHHHhCCCCCCCCcccccCCC-cHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhh-ccccc
Q 048253          146 VKHNQ------LDALKFLLDNMDDPQFLNAEDDYGM-TITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTT-RTMIE  217 (323)
Q Consensus       146 ~~~g~------~~~v~~Ll~~g~~~~~~~~~d~~g~-t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~-~g~~~  217 (323)
                      +..++      .+++++|+++|++   +|.+|..|+ ||||+|+..+..            .....+++++|++ +| ++
T Consensus        83 ~~~~~~~~~~~~~iv~~Ll~~Gad---in~~d~~g~ttpLh~A~~~~~~------------~~~~~~iv~~Ll~~~g-ad  146 (186)
T 3t8k_A           83 FQGGGNDITGTTELCKIFLEKGAD---ITALYKPYKIVVFKNIFNYFVD------------ENEMIPLYKLIFSQSG-LQ  146 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCC---SSSCBGGGTBCTTGGGGGCCSC------------HHHHHHHHHHHHTSTT-CC
T ss_pred             HHcCCcchhhHHHHHHHHHHCCCC---CCccCCCcCchHHHHHHHcCCC------------hhhHHHHHHHHHHhcC-CC
Confidence            99987      5789999999999   999999999 999999984432            0011179999999 77 99


Q ss_pred             ccccccCCCchhhhhhhccCCCchhhhHHHHh
Q 048253          218 VNALNANGFMALDTLAQSKRDKKDWEIEDWKM  249 (323)
Q Consensus       218 ~~~~d~~g~tpl~~A~~~~~~~~~~~i~~~L~  249 (323)
                      ++.+|..|+||||+|++    .++.+++++|.
T Consensus       147 ~~~~d~~G~TpL~~A~~----~~~~~~v~~L~  174 (186)
T 3t8k_A          147 LLIKDKWGLTALEFVKR----CQKPIALKMME  174 (186)
T ss_dssp             TTCCCTTSCCHHHHHHT----TTCHHHHHHHH
T ss_pred             CcccCCCCCCHHHHHHH----cCCHHHHHHHH
Confidence            99999999999999999    99999999983

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.94  E-value=1.3e-26  Score=176.40  Aligned_cols=124  Identities=31%  Similarity=0.449  Sum_probs=97.6

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhC
Q 048253           37 SEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKG  115 (323)
Q Consensus        37 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g  115 (323)
                      |.||||+|+..|+.+++++|++++.++ +.++..|.||||+|+..++.+++++|++.|+++ +.++..| ||||+|+..|
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~   79 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNG   79 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHHcC
Confidence            778888888888888888888877776 677777888888888888888888888877777 6677777 8888888888


Q ss_pred             CHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCC
Q 048253          116 RIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDD  163 (323)
Q Consensus       116 ~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~  163 (323)
                      +.+++++|++ .+.+++..|..|+||||+|+..|+.+++++|+++|++
T Consensus        80 ~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           80 HLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             hHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            8888888887 6777777777888888888888888888888877764

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.94  E-value=1.5e-26  Score=179.25  Aligned_cols=125  Identities=22%  Similarity=0.265  Sum_probs=110.9

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHH
Q 048253           34 NCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAA  112 (323)
Q Consensus        34 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~  112 (323)
                      ...+.||||+|+..|+.+++++|++++.++ +.+|..|+||||+|+..|+.+++++|+++|+++ +.++..| ||||+|+
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~   88 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAA   88 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHH
Confidence            345889999999999999999999998887 888899999999999999999999999999988 7788888 9999999


Q ss_pred             HhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCC
Q 048253          113 MKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNM  161 (323)
Q Consensus       113 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g  161 (323)
                      ..|+.+++++|++ .+.+++..|..|+||||+|+..|+.+++++|+++|
T Consensus        89 ~~~~~~~v~~Ll~-~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           89 FIGHLEIAEVLLK-HGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HcCCHHHHHHHHH-cCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999999998 78888888999999999999999999999998865

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.94  E-value=4.7e-26  Score=173.32  Aligned_cols=125  Identities=32%  Similarity=0.437  Sum_probs=119.4

Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhh
Q 048253           70 NQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKH  148 (323)
Q Consensus        70 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~  148 (323)
                      +|+||||+|++.|+.+++++|+++|+++ +..+..| ||||+|+..++.+++++|++ .+.+++..|..|+||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~A~~~   78 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARN   78 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHH-cCCCCcccCCCCCcHHHHHHHc
Confidence            5899999999999999999999999998 7788899 99999999999999999999 7889999999999999999999


Q ss_pred             CchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhccccc
Q 048253          149 NQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIE  217 (323)
Q Consensus       149 g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~  217 (323)
                      |+.+++++|+++|++   ++.+|..|.||||+|+..++.                 +++++|+++| +|
T Consensus        79 ~~~~~~~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~~-----------------~~~~~Ll~~G-ad  126 (126)
T 1n0r_A           79 GHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHL-----------------EVVKLLLEAG-AY  126 (126)
T ss_dssp             TCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCH-----------------HHHHHHHHHT-CC
T ss_pred             ChHHHHHHHHHcCCC---CcccCCCCCCHHHHHHHcCcH-----------------HHHHHHHHcC-CC
Confidence            999999999999998   899999999999999999999                 9999999988 54

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.94  E-value=2.9e-26  Score=177.62  Aligned_cols=126  Identities=25%  Similarity=0.287  Sum_probs=118.3

Q ss_pred             cCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHH
Q 048253           67 LDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLC  145 (323)
Q Consensus        67 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A  145 (323)
                      ....+.||||+|++.|+.+++++|+++|+++ +.++..| ||||+|+..|+.+++++|++ .+.+++..|..|+||||+|
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A   87 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLK-NGADVNAVDAIGFTPLHLA   87 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHH
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCCHHHHH
Confidence            4567889999999999999999999999998 8889999 99999999999999999999 7899999999999999999


Q ss_pred             HhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcc
Q 048253          146 VKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRT  214 (323)
Q Consensus       146 ~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g  214 (323)
                      +..|+.+++++|+++|++   ++.+|.+|+||||+|+..++.                 +++++|++.|
T Consensus        88 ~~~~~~~~v~~Ll~~g~~---~~~~~~~g~tpl~~A~~~~~~-----------------~~~~~Ll~~G  136 (136)
T 2jab_A           88 AFIGHLEIAEVLLKHGAD---VNAQDKFGKTAFDISIGNGNE-----------------DLAEILQKLN  136 (136)
T ss_dssp             HHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCH-----------------HHHHHHHHC-
T ss_pred             HHcCCHHHHHHHHHcCCC---CcCcCCCCCCHHHHHHHCCCH-----------------HHHHHHHHcC
Confidence            999999999999999998   899999999999999999999                 9999999865

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.94  E-value=7.7e-28  Score=205.30  Aligned_cols=139  Identities=20%  Similarity=0.125  Sum_probs=126.0

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccC-CCC-cHHHHHH
Q 048253           35 CLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGD-LDG-SPLHLAA  112 (323)
Q Consensus        35 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g-t~L~~A~  112 (323)
                      ..|.||||+|+..|+.+++++|++ +.++ +.+|..|+||||+|+..|+.+++++|+++|+++ +.++ ..| ||||+|+
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~~A~  119 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAA  119 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHH
Confidence            358999999999999999999999 8877 899999999999999999999999999999999 5566 788 9999999


Q ss_pred             HhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHH
Q 048253          113 MKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLV  192 (323)
Q Consensus       113 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~  192 (323)
                      ..|+.+++++|++ .+++++..|..|+||||+|+..++                    ...+.||||+|+..|+.     
T Consensus       120 ~~g~~~~v~~Ll~-~ga~~~~~d~~g~t~l~~A~~~~~--------------------~~~~~~~l~~a~~~g~~-----  173 (244)
T 3ui2_A          120 GYVRPEVVEALVE-LGADIEVEDERGLTALELAREILK--------------------TTPKGNPMQFGRRIGLE-----  173 (244)
T ss_dssp             HTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHHT--------------------TCCCSSHHHHHHHHHHH-----
T ss_pred             HcCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHHHh--------------------ccCCCCHHHHHHHcChH-----
Confidence            9999999999999 799999999999999999986321                    24678999999999999     


Q ss_pred             HHHHHHhhcchHHHHHHHhhcc
Q 048253          193 ELVEEYCHSKWGYVIRFLTTRT  214 (323)
Q Consensus       193 ~~l~~~~~~~~~~~v~~Ll~~g  214 (323)
                                  +++++|++++
T Consensus       174 ------------~iv~~L~~~~  183 (244)
T 3ui2_A          174 ------------KVINVLEGQV  183 (244)
T ss_dssp             ------------HHHHHHHHHH
T ss_pred             ------------HHHHHHHHhc
Confidence                        9999998864

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.93  E-value=1e-25  Score=183.50  Aligned_cols=136  Identities=21%  Similarity=0.186  Sum_probs=92.3

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccC-CCCCcHHHHHH
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELD-SNQFSALHIAS   79 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~tpL~~A~   79 (323)
                      |+||||.|+..|+.+++++|++ +.+++.   .|..|.||||+|+..|+.+++++|+++++++ +.++ ..|+||||+|+
T Consensus        44 g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~---~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~  118 (183)
T 3deo_A           44 YETPWWTAARKADEQALSQLLE-DRDVDA---VDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAA  118 (183)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHTT-TSCTTC---CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHh-cCCCCC---cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHH
Confidence            3567777777777777777777 554422   3556777777777777777777777777766 5555 66777777777


Q ss_pred             hcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHH
Q 048253           80 QKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLL  158 (323)
Q Consensus        80 ~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll  158 (323)
                      ..|+.+++++|+++|+++ +.++..| ||||+|++.++.                  ..+.++|++|+..|+.+++++|.
T Consensus       119 ~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~~~~i~~~L~  179 (183)
T 3deo_A          119 GYVRPEVVEALVELGADI-EVEDERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKVINVLE  179 (183)
T ss_dssp             HTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             hcCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhccC------------------cccccHHHHHHHcCHHHHHHHHH
Confidence            777777777777777776 6667777 777777653211                  24566777777777777777776


Q ss_pred             hC
Q 048253          159 DN  160 (323)
Q Consensus       159 ~~  160 (323)
                      ++
T Consensus       180 ~~  181 (183)
T 3deo_A          180 GQ  181 (183)
T ss_dssp             TC
T ss_pred             Hh
Confidence            54

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=6.6e-26  Score=175.74  Aligned_cols=116  Identities=26%  Similarity=0.298  Sum_probs=60.2

Q ss_pred             cCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHH
Q 048253           67 LDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLC  145 (323)
Q Consensus        67 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A  145 (323)
                      +|..|+||||+|+..|+.+++++|++.|+++ +.++..| ||||+|+..|+.+++++|++ .+.+++..|..|+||||+|
T Consensus         6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A   83 (137)
T 3c5r_A            6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQ-HKALVNTTGYQNDSPLHDA   83 (137)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCGGGCCHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCcccCcCCCCCCHHHHH
Confidence            3444555555555555555555555554444 4444444 55555555555555555554 4444555555555555555


Q ss_pred             HhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcch
Q 048253          146 VKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLC  187 (323)
Q Consensus       146 ~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~  187 (323)
                      +..|+.+++++|+++|++   ++.+|..|.||||+|+..+..
T Consensus        84 ~~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpl~~A~~~~~~  122 (137)
T 3c5r_A           84 AKNGHVDIVKLLLSYGAS---RNAVNIFGLRPVDYTDDESMK  122 (137)
T ss_dssp             HHTTCHHHHHHHHHTTCC---TTCCCTTSCCGGGGCCCHHHH
T ss_pred             HHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHhhccHH
Confidence            555555555555555555   555555555555555555444

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=1.1e-25  Score=174.44  Aligned_cols=123  Identities=20%  Similarity=0.194  Sum_probs=117.8

Q ss_pred             ccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHH
Q 048253          100 AGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTIT  178 (323)
Q Consensus       100 ~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~L  178 (323)
                      .++..| ||||+|+..|+.+++++|++ .+.+++..|..|+||||+|+..|+.+++++|+++|++   ++.+|..|+|||
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L   80 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQ-NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL---VNTTGYQNDSPL   80 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCGGGCCHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc---ccCcCCCCCCHH
Confidence            577889 99999999999999999999 7899999999999999999999999999999999998   999999999999


Q ss_pred             HHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhhccCCCchhhhHHHH
Q 048253          179 QLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       179 h~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~~~~~~~~~~i~~~L  248 (323)
                      |+|+..++.                 +++++|+++| ++++.+|..|.||+++|+.    .+..+++++|
T Consensus        81 ~~A~~~~~~-----------------~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~----~~~~~~l~~l  128 (137)
T 3c5r_A           81 HDAAKNGHV-----------------DIVKLLLSYG-ASRNAVNIFGLRPVDYTDD----ESMKSLLLLP  128 (137)
T ss_dssp             HHHHHTTCH-----------------HHHHHHHHTT-CCTTCCCTTSCCGGGGCCC----HHHHHHHSCC
T ss_pred             HHHHHcCCH-----------------HHHHHHHHcC-CCCCCCCCCCCCHHHHHhh----ccHHHHHhhc
Confidence            999999999                 9999999998 8999999999999999999    8888888888

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.93  E-value=1.2e-25  Score=191.68  Aligned_cols=138  Identities=20%  Similarity=0.177  Sum_probs=124.3

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccC-CCCCcHHHHHH
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELD-SNQFSALHIAS   79 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~tpL~~A~   79 (323)
                      |+||||.|++.|+.++|++|++ +.+++.   .|..|.||||+|+..|+.+++++|+++++++ +.++ ..|+||||+|+
T Consensus        45 g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~---~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~~A~  119 (244)
T 3ui2_A           45 YETPWWTAARKADEQALSQLLE-DRDVDA---VDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAA  119 (244)
T ss_dssp             HHHHHHHHHTTTCHHHHHHTTT-TCCTTC---BCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHc-CCCCCC---cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHH
Confidence            5799999999999999999999 776543   4778999999999999999999999999998 7777 88999999999


Q ss_pred             hcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHH
Q 048253           80 QKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLL  158 (323)
Q Consensus        80 ~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll  158 (323)
                      ..|+.+++++|+++|+++ +.++..| ||||+|+..++                  ...+.||||+|+..|+.+++++|+
T Consensus       120 ~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~~------------------~~~~~~~l~~a~~~g~~~iv~~L~  180 (244)
T 3ui2_A          120 GYVRPEVVEALVELGADI-EVEDERGLTALELAREILK------------------TTPKGNPMQFGRRIGLEKVINVLE  180 (244)
T ss_dssp             HTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHHT------------------TCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHHh------------------ccCCCCHHHHHHHcChHHHHHHHH
Confidence            999999999999999999 8899999 99999986321                  246899999999999999999999


Q ss_pred             hCCC
Q 048253          159 DNMD  162 (323)
Q Consensus       159 ~~g~  162 (323)
                      +++.
T Consensus       181 ~~~~  184 (244)
T 3ui2_A          181 GQVF  184 (244)
T ss_dssp             HHHE
T ss_pred             Hhcc
Confidence            8653

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.93  E-value=2.1e-25  Score=181.66  Aligned_cols=139  Identities=20%  Similarity=0.116  Sum_probs=125.8

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccC-CCC-cHHHHH
Q 048253           34 NCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGD-LDG-SPLHLA  111 (323)
Q Consensus        34 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g-t~L~~A  111 (323)
                      +..|.||||+|+..|+.+++++|++ +.++ +.+|..|+||||+|+..|+.+++++|+++|+++ +.++ ..| ||||+|
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A  117 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMA  117 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHH
Confidence            3458999999999999999999999 8777 899999999999999999999999999999999 5566 889 999999


Q ss_pred             HHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhH
Q 048253          112 AMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNL  191 (323)
Q Consensus       112 ~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~  191 (323)
                      +..|+.+++++|++ .+++++.+|.+|+||||+|+..++.                    ..+.++|++|+..|+.    
T Consensus       118 ~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~~~~--------------------~~~~~~l~~a~~~~~~----  172 (183)
T 3deo_A          118 AGYVRPEVVEALVE-LGADIEVEDERGLTALELAREILKT--------------------TPKGNPMQFGRRIGLE----  172 (183)
T ss_dssp             HHTTCHHHHHHHHH-HTCCTTCCCTTSCCHHHHHHHHHHT--------------------CCCCSHHHHHHHHHHH----
T ss_pred             HhcCcHHHHHHHHH-cCCCCcCCCCCCCCHHHHHHHhccC--------------------cccccHHHHHHHcCHH----
Confidence            99999999999999 6899999999999999999975432                    3457999999999999    


Q ss_pred             HHHHHHHhhcchHHHHHHHhhc
Q 048253          192 VELVEEYCHSKWGYVIRFLTTR  213 (323)
Q Consensus       192 ~~~l~~~~~~~~~~~v~~Ll~~  213 (323)
                                   +++++|.++
T Consensus       173 -------------~i~~~L~~~  181 (183)
T 3deo_A          173 -------------KVINVLEGQ  181 (183)
T ss_dssp             -------------HHHHHHHTC
T ss_pred             -------------HHHHHHHHh
Confidence                         999998765

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.92  E-value=9.7e-26  Score=189.29  Aligned_cols=139  Identities=17%  Similarity=0.149  Sum_probs=109.6

Q ss_pred             cccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHH
Q 048253           65 GELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILH  143 (323)
Q Consensus        65 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh  143 (323)
                      +..+..|.||||+|+..|+.+++++|++.|+++ +.++..| ||||+|+..|+.+++++|++..+.+++..|..|+||||
T Consensus        67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~  145 (222)
T 3ehr_A           67 AEQAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALH  145 (222)
T ss_dssp             HHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHH
T ss_pred             cccccccccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHH
Confidence            334667889999999999999999999999888 7788888 99999999999999999998448889999999999999


Q ss_pred             HHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhccccccccccc
Q 048253          144 LCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNA  223 (323)
Q Consensus       144 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~  223 (323)
                      +|+..|+.+++++|+++|++   ++.+|.+|.||||+|+..++.                 ++++.|++.+ ++.+..|.
T Consensus       146 ~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~-----------------~~l~~l~~~~-~~~~~~~~  204 (222)
T 3ehr_A          146 AAAWKGYADIVQLLLAKGAR---TDLRNIEKKLAFDMATNAACA-----------------SLLKKKQGTD-AVRTLSNA  204 (222)
T ss_dssp             HHHHHTCHHHHHHHHHHTCC---SCCCCTTSCCHHHHCCSHHHH-----------------HHHC---------------
T ss_pred             HHHHcCCHHHHHHHHHcCCC---CccccCCCCCHHHHhcchhHH-----------------HHHHHHhccc-hhhhccch
Confidence            99999999999999999988   888999999999999998888                 9999999887 67777766


Q ss_pred             CC
Q 048253          224 NG  225 (323)
Q Consensus       224 ~g  225 (323)
                      +|
T Consensus       205 ~~  206 (222)
T 3ehr_A          205 ED  206 (222)
T ss_dssp             --
T ss_pred             hh
Confidence            54

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.92  E-value=4e-25  Score=194.17  Aligned_cols=139  Identities=17%  Similarity=0.123  Sum_probs=122.4

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCCCcccc------cCCCCCcHHHHHHhc---CCHHHHHHHHhcCCccccccCCCC-c
Q 048253           37 SEFPLHAAALLGHVDFEGEIRRQKPELAGE------LDSNQFSALHIASQK---VHVDKIKALLQVNPAWCFAGDLDG-S  106 (323)
Q Consensus        37 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~------~~~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g-t  106 (323)
                      +.++||.|+..|+.+.++.|++.++++ +.      .+..|+||||+|+..   |+.+++++|+++|+++ +.+|..| |
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~-~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~T  228 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDF-GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNT  228 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCCC
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcc-cccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCCC
Confidence            346799999999999999999999987 55      689999999999997   8999999999999999 8889999 9


Q ss_pred             HHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcc
Q 048253          107 PLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKL  186 (323)
Q Consensus       107 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~  186 (323)
                      |||+|+..|+.+++++|++ .+++++.+|..|+||||+|+..|+.+++++|+++|++         .|.||||+|+..|+
T Consensus       229 pLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~---------~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          229 ALHYAALYNQPDCLKLLLK-GRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG---------TFAFPLHVDYSWVI  298 (301)
T ss_dssp             HHHHHHHTTCHHHHHHHHH-TTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH---------TTSSCCC-------
T ss_pred             HHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC---------CCCChhHHHHhcCC
Confidence            9999999999999999999 8999999999999999999999999999999998754         57899999999886


Q ss_pred             h
Q 048253          187 C  187 (323)
Q Consensus       187 ~  187 (323)
                      .
T Consensus       299 ~  299 (301)
T 2b0o_E          299 S  299 (301)
T ss_dssp             -
T ss_pred             c
Confidence            5

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.92  E-value=6e-25  Score=193.02  Aligned_cols=140  Identities=19%  Similarity=0.086  Sum_probs=119.6

Q ss_pred             cHHHHHHHhCCHHHHHHHhccCccccccc---cCCCCCCCHHHHHHHc---CCHHHHHHHHHhCCCcccccCCCCCcHHH
Q 048253            3 SMLYEAALKGCEPTLLELLQQDQLIIGRV---GVNCLSEFPLHAAALL---GHVDFEGEIRRQKPELAGELDSNQFSALH   76 (323)
Q Consensus         3 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~---~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~   76 (323)
                      ++|+.|+..|+.+.++.|++.+++++...   ..+..|.||||+|+..   |+.+++++|+++++++ +.+|..|+||||
T Consensus       153 ~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~TpLh  231 (301)
T 2b0o_E          153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTALH  231 (301)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCCCHHH
T ss_pred             HHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCCCHHH
Confidence            57999999999999999999998865420   1366799999999997   8999999999999998 899999999999


Q ss_pred             HHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCch
Q 048253           77 IASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQL  151 (323)
Q Consensus        77 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~  151 (323)
                      +|+..|+.+++++|+++|+++ +.+|..| ||||+|+..|+.+++++|++ .+++      .|.||||+|+..|+.
T Consensus       232 ~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~-~ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          232 YAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQ-AQAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHH-HHHH------TTSSCCC--------
T ss_pred             HHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHH-hcCC------CCCChhHHHHhcCCc
Confidence            999999999999999999999 8899999 99999999999999999999 3332      689999999998864

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.92  E-value=1.2e-24  Score=165.40  Aligned_cols=110  Identities=21%  Similarity=0.252  Sum_probs=71.4

Q ss_pred             CCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHH
Q 048253          103 LDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLA  181 (323)
Q Consensus       103 ~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A  181 (323)
                      ..| ||||+|+..|+.+++++|++ .+.+++..|..|+||||+|+..|+.+++++|+++|++   ++.+|..|+||||+|
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~d~~g~tpL~~A   80 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVA-KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD---INAPDKHHITPLLSA   80 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHH-TTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC---TTCCCTTSCCHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHH-cCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCcCCCCCCCHHHHH
Confidence            345 66666666666666666666 5556666666666666666666666666666666666   666666666666666


Q ss_pred             HhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhh
Q 048253          182 VAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQ  234 (323)
Q Consensus       182 ~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~  234 (323)
                      +..++.                 +++++|+++| ++++.+|.+|.||+++|..
T Consensus        81 ~~~~~~-----------------~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           81 VYEGHV-----------------SCVKLLLSKG-ADKTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             HHHTCH-----------------HHHHHHHHTT-CCTTCCCTTSCCHHHHCCC
T ss_pred             HHcCCH-----------------HHHHHHHHcC-CCCCCcCCCCCCHHHHhCC
Confidence            666666                 6666666665 6666666666666666644

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.92  E-value=1e-24  Score=165.81  Aligned_cols=115  Identities=15%  Similarity=0.098  Sum_probs=88.7

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHH
Q 048253           35 CLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAM  113 (323)
Q Consensus        35 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~  113 (323)
                      ..|.||||+|+..|+.+++++|++.+.++ +.+|..|+||||+|+..|+.+++++|++.|+++ +.++..| ||||+|+.
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~A~~   82 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVY   82 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHH
Confidence            44778888888888888888888888776 777888888888888888888888888888877 6777777 88888888


Q ss_pred             hCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchh
Q 048253          114 KGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLD  152 (323)
Q Consensus       114 ~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~  152 (323)
                      .|+.+++++|++ .+++++.+|.+|+||||+|...+..+
T Consensus        83 ~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~  120 (123)
T 3aaa_C           83 EGHVSCVKLLLS-KGADKTVKGPDGLTAFEATDNQAIKA  120 (123)
T ss_dssp             HTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHCCCHHHHH
T ss_pred             cCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHhCCHHHHH
Confidence            888888888887 67777778888888888875444333

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.91  E-value=4e-25  Score=185.50  Aligned_cols=132  Identities=22%  Similarity=0.186  Sum_probs=113.7

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhc-CCccccccCCCC-cHHHHH
Q 048253           34 NCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQV-NPAWCFAGDLDG-SPLHLA  111 (323)
Q Consensus        34 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g-t~L~~A  111 (323)
                      +..|.||||+|+..|+.+++++|++.+.++ +.+|..|+||||+|+..|+.+++++|++. |+++ +.++..| ||||+|
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~~A  147 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHAA  147 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHHHH
Confidence            345789999999999999999999999997 89999999999999999999999999999 8888 8899999 999999


Q ss_pred             HHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCc
Q 048253          112 AMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLN  168 (323)
Q Consensus       112 ~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~  168 (323)
                      +..|+.+++++|++ .+++++.+|..|+||||+|+..++.++++.|++.++.....+
T Consensus       148 ~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~  203 (222)
T 3ehr_A          148 AWKGYADIVQLLLA-KGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSN  203 (222)
T ss_dssp             HHHTCHHHHHHHHH-HTCCSCCCCTTSCCHHHHCCSHHHHHHHC-------------
T ss_pred             HHcCCHHHHHHHHH-cCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccc
Confidence            99999999999999 689999999999999999999999999999999998743333

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.90  E-value=1.2e-23  Score=182.71  Aligned_cols=122  Identities=19%  Similarity=0.204  Sum_probs=96.8

Q ss_pred             CcHHHHHHhcCCHHHHHHHHhcCCccc-----cccCCCC-cHHHHHHHh---CCHHHHHHHHHhCCCcccccccccccHH
Q 048253           72 FSALHIASQKVHVDKIKALLQVNPAWC-----FAGDLDG-SPLHLAAMK---GRIDVLEELFRTRPLAASATMIWGETIL  142 (323)
Q Consensus        72 ~tpL~~A~~~g~~~~v~~Ll~~~~~~~-----~~~~~~g-t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~t~L  142 (323)
                      .++|+.|++.|+.+.++.+++.|+++.     ...+..| ||||+|+..   |+.+++++|++ .+++++.+|..|+|||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~-~ga~in~~d~~g~TpL  209 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ-NSGNLDKQTGKGSTAL  209 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHH-HCSCTTCCCTTCCCHH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHH-CCCCccccCCCCCCHH
Confidence            467888888888888888888887752     3336677 888888887   77888888888 5777888888888888


Q ss_pred             HHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcc
Q 048253          143 HLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRT  214 (323)
Q Consensus       143 h~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g  214 (323)
                      |+|+..|+.+++++|+++|++   ++.+|.+|.||||+|+..|+.                 +++++|+++|
T Consensus       210 h~A~~~g~~~~v~~Ll~~gad---~~~~d~~g~tpL~~A~~~~~~-----------------~~v~~Ll~~g  261 (278)
T 1dcq_A          210 HYCCLTDNAECLKLLLRGKAS---IEIANESGETPLDIAKRLKHE-----------------HCEELLTQAL  261 (278)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCH-----------------HHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCC---CCCccCCCCCHHHHHHHcCCH-----------------HHHHHHHHcC
Confidence            888888888888888888877   788888888888888888888                 8888888877

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.89  E-value=2e-23  Score=187.75  Aligned_cols=147  Identities=14%  Similarity=0.064  Sum_probs=117.2

Q ss_pred             CCCCHHHHHHHc-CCHHHHHHHHHhCCCcccccC--CCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHH
Q 048253           36 LSEFPLHAAALL-GHVDFEGEIRRQKPELAGELD--SNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLA  111 (323)
Q Consensus        36 ~g~t~Lh~A~~~-g~~~~v~~Ll~~~~~~~~~~~--~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A  111 (323)
                      .+.|+||.|+.. |+.+++++|+++++++ +..+  ..|.||||+|+..|+.+++++|+++|+++ +.+|..| ||||+|
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh~A  275 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHHA  275 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHH
Confidence            356899999999 9999999999999998 7777  89999999999999999999999999999 8899999 999999


Q ss_pred             HHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhc
Q 048253          112 AMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVK  185 (323)
Q Consensus       112 ~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~  185 (323)
                      +..|+.+++++|++ .+++++..|.+|+||||+|+..++.+++++|++.+.........+..+.|+++++....
T Consensus       276 ~~~g~~~~v~~LL~-~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~  348 (368)
T 3jue_A          276 TILGHTGLACLFLK-RGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS  348 (368)
T ss_dssp             HHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred             HHcCcHHHHHHHHH-CcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence            99999999999999 78999999999999999999999999999999887554445566778889998876554

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.88  E-value=1.9e-22  Score=175.11  Aligned_cols=185  Identities=17%  Similarity=0.149  Sum_probs=139.4

Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccc-ccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHH
Q 048253           33 VNCLSEFPLHAAALLGHVDFEGEIRRQKPELAG-ELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHL  110 (323)
Q Consensus        33 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~-~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~  110 (323)
                      .|..+.+.|+.+...|+..+.+++-..-+.... .++. +....+    ....-..+++...-........... ++|+.
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~-~s~~~~----~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~  136 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNP-GSDMIA----RKDYITAKYMERRYARKKHADTAAKLHSLCE  136 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCT-TCCHHH----HHHHHHHHHTTCTTSCCCSSSHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCC-CCCHHH----HHHHHHHHHHHhhcccccccccchhhhhhhh
Confidence            466788899999999988777765443222100 1111 111111    1111122333332222212222234 78999


Q ss_pred             HHHhCCHHHHHHHHHhCCCc------ccccccccccHHHHHHhh---CchhHHHHHHhCCCCCCCCcccccCCCcHHHHH
Q 048253          111 AAMKGRIDVLEELFRTRPLA------ASATMIWGETILHLCVKH---NQLDALKFLLDNMDDPQFLNAEDDYGMTITQLA  181 (323)
Q Consensus       111 A~~~g~~~~v~~Ll~~~~~~------~~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A  181 (323)
                      |+..|+.+.++.+++ .+.+      ++..|..|+||||+|+..   |+.+++++|+++|++   +|.+|..|+||||+|
T Consensus       137 a~~~~d~~~~~~ll~-~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~---in~~d~~g~TpLh~A  212 (278)
T 1dcq_A          137 AVKTRDIFGLLQAYA-DGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN---LDKQTGKGSTALHYC  212 (278)
T ss_dssp             HHHTTCHHHHHHHHH-TTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC---TTCCCTTCCCHHHHH
T ss_pred             HhhhcccHHHHHHHH-hhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC---ccccCCCCCCHHHHH
Confidence            999999999999999 5655      444588999999999999   899999999999999   999999999999999


Q ss_pred             HhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhhccCCCchhhhHHHH
Q 048253          182 VAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       182 ~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~~~~~~~~~~i~~~L  248 (323)
                      +..|+.                 +++++|+++| ++++.+|.+|.||||+|++    .++.+++++|
T Consensus       213 ~~~g~~-----------------~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~----~~~~~~v~~L  257 (278)
T 1dcq_A          213 CLTDNA-----------------ECLKLLLRGK-ASIEIANESGETPLDIAKR----LKHEHCEELL  257 (278)
T ss_dssp             HHTTCH-----------------HHHHHHHHTT-CCTTCCCTTSCCHHHHHHH----TTCHHHHHHH
T ss_pred             HHcCCH-----------------HHHHHHHHcC-CCCCCccCCCCCHHHHHHH----cCCHHHHHHH
Confidence            999999                 9999999998 9999999999999999999    9999999998

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.88  E-value=1.2e-22  Score=182.72  Aligned_cols=145  Identities=18%  Similarity=0.106  Sum_probs=117.3

Q ss_pred             CCCCCcHHHHHHhc-CCHHHHHHHHhcCCccccccC--CCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHH
Q 048253           68 DSNQFSALHIASQK-VHVDKIKALLQVNPAWCFAGD--LDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILH  143 (323)
Q Consensus        68 ~~~g~tpL~~A~~~-g~~~~v~~Ll~~~~~~~~~~~--~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh  143 (323)
                      +..+.||||.|+.. |+.+++++|++.|+++ +..+  ..| ||||+|+..|+.+++++|++ .+++++..|..|+||||
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~-~Gadvn~~d~~G~TpLh  273 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQ-NGANVNQADSAGRGPLH  273 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHH
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCCCCCCCCHHH
Confidence            34566899999999 9999999999999999 6666  788 99999999999999999999 79999999999999999


Q ss_pred             HHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhccc--cccccc
Q 048253          144 LCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTM--IEVNAL  221 (323)
Q Consensus       144 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~--~~~~~~  221 (323)
                      +|+..|+.+++++|+++|++   ++.+|.+|.||||+|+..++.                 +++++|+..+.  .+....
T Consensus       274 ~A~~~g~~~~v~~LL~~Gad---~~~~d~~G~TpL~~A~~~g~~-----------------~iv~lLl~~~~~~~~~~~~  333 (368)
T 3jue_A          274 HATILGHTGLACLFLKRGAD---LGARDSEGRDPLTIAMETANA-----------------DIVTLLRLAKMREAEAAQG  333 (368)
T ss_dssp             HHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCH-----------------HHHHHHHHHHC--------
T ss_pred             HHHHcCcHHHHHHHHHCcCC---CCCcCCCCCCHHHHHHHCCCH-----------------HHHHHHHHcCCCccccccc
Confidence            99999999999999999999   999999999999999999999                 99999997652  334455


Q ss_pred             ccCCCchhhhhhh
Q 048253          222 NANGFMALDTLAQ  234 (323)
Q Consensus       222 d~~g~tpl~~A~~  234 (323)
                      +..+.|+++++..
T Consensus       334 ~~~~~t~l~i~~~  346 (368)
T 3jue_A          334 QAGDETYLDIFRD  346 (368)
T ss_dssp             -------------
T ss_pred             CCCCCCHHHHHHH
Confidence            7778899888776

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.88  E-value=3.2e-22  Score=144.18  Aligned_cols=91  Identities=24%  Similarity=0.277  Sum_probs=47.4

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHh
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQ   80 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~   80 (323)
                      |+||||.|+..|+.+++++|++.+++++.   +|..|.||||+|+..|+.+++++|+++++++ +.+|..|+||||+|++
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~---~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~   77 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNA---KDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAAR   77 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTC---CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcc---cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHH
Confidence            44555555555555555555555544322   2444555555555555555555555555554 4555555555555555


Q ss_pred             cCCHHHHHHHHhcCC
Q 048253           81 KVHVDKIKALLQVNP   95 (323)
Q Consensus        81 ~g~~~~v~~Ll~~~~   95 (323)
                      .|+.+++++|+++|+
T Consensus        78 ~~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           78 NGHLEVVKLLLEAGA   92 (93)
T ss_dssp             TTCHHHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHcCC
Confidence            555555555555544

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.87  E-value=1.1e-21  Score=141.29  Aligned_cols=87  Identities=32%  Similarity=0.503  Sum_probs=67.8

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhC
Q 048253           37 SEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKG  115 (323)
Q Consensus        37 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g  115 (323)
                      |+||||+|+..|+.+++++|+++++++ +.+|..|+||||+|+..|+.+++++|+++|+++ +.++..| ||||+|+..|
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~   79 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNG   79 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcC
Confidence            778888888888888888888877776 777777888888888888888888888877777 6677777 7777777777


Q ss_pred             CHHHHHHHHH
Q 048253          116 RIDVLEELFR  125 (323)
Q Consensus       116 ~~~~v~~Ll~  125 (323)
                      +.+++++|++
T Consensus        80 ~~~~~~~Ll~   89 (93)
T 1n0q_A           80 HLEVVKLLLE   89 (93)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            7777777777

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.86  E-value=6.7e-22  Score=148.23  Aligned_cols=107  Identities=29%  Similarity=0.368  Sum_probs=76.3

Q ss_pred             cCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHH
Q 048253          101 GDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQ  179 (323)
Q Consensus       101 ~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh  179 (323)
                      +|..| ||||+|+..|+.+++++|++ .+.+++..|..|+||||+|+..++.+++++|+++|++   ++.+|..|.||||
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~d~~g~tpl~   80 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLS-KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD---VNARSKDGNTPEH   80 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTT-TTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC---TTCCCTTCCCTTH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC---CcccCCCCCCHHH
Confidence            55666 77777777777777777777 5666777777777777777777777777777777776   6777777777777


Q ss_pred             HHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchh
Q 048253          180 LAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMAL  229 (323)
Q Consensus       180 ~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl  229 (323)
                      +|+..++.                 +++++|+++| ++++.++..|.||-
T Consensus        81 ~A~~~~~~-----------------~~~~~Ll~~g-a~~n~~~~~~~~~~  112 (115)
T 2l6b_A           81 LAKKNGHH-----------------EIVKLLDAKG-ADVNARSWGSSHHH  112 (115)
T ss_dssp             HHHTTTCH-----------------HHHHHHHTTS-SSHHHHSCCCC---
T ss_pred             HHHHCCCH-----------------HHHHHHHHcC-CCCCcCCccccccc
Confidence            77777777                 7777777776 77777777777663

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.85  E-value=8.8e-22  Score=147.57  Aligned_cols=105  Identities=23%  Similarity=0.270  Sum_probs=56.1

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHH
Q 048253           34 NCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAA  112 (323)
Q Consensus        34 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~  112 (323)
                      |.+|.||||+|+..|+.+++++|+++++++ +.+|..|+||||+|+..|+.+++++|+++|+++ +.++..| ||||+|+
T Consensus         6 d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl~~A~   83 (115)
T 2l6b_A            6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHLAK   83 (115)
T ss_dssp             SCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTTHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHHH
Confidence            444555555555555555555555555554 555555555555555555555555555555555 4445555 5555555


Q ss_pred             HhCCHHHHHHHHHhCCCcccccccccccH
Q 048253          113 MKGRIDVLEELFRTRPLAASATMIWGETI  141 (323)
Q Consensus       113 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~  141 (323)
                      ..++.+++++|++ .+++++..+..|.+|
T Consensus        84 ~~~~~~~~~~Ll~-~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           84 KNGHHEIVKLLDA-KGADVNARSWGSSHH  111 (115)
T ss_dssp             TTTCHHHHHHHHT-TSSSHHHHSCCCC--
T ss_pred             HCCCHHHHHHHHH-cCCCCCcCCcccccc
Confidence            5555555555555 455555555555444

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.78  E-value=7.4e-19  Score=130.61  Aligned_cols=89  Identities=24%  Similarity=0.255  Sum_probs=74.4

Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHH
Q 048253           33 VNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLA  111 (323)
Q Consensus        33 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A  111 (323)
                      .|.+|.||||+|+..|+.+++++|+++++++ +.+|..|+||||+|+..|+.+++++|+++|+++ +.++..| ||||+|
T Consensus        20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A   97 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFGKTAFDIS   97 (110)
T ss_dssp             --CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             cCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccccCCCcHHHHH
Confidence            4566888888888888888888888888877 778888888888888888888888888888887 7778888 888888


Q ss_pred             HHhCCHHHHHHH
Q 048253          112 AMKGRIDVLEEL  123 (323)
Q Consensus       112 ~~~g~~~~v~~L  123 (323)
                      +..|+.+++++|
T Consensus        98 ~~~~~~~~~~~L  109 (110)
T 2zgd_A           98 IDNGNEDLAEIL  109 (110)
T ss_dssp             HHHTCHHHHHHH
T ss_pred             HHcCCHHHHHHh
Confidence            888888888876

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.77  E-value=7.4e-19  Score=130.60  Aligned_cols=92  Identities=22%  Similarity=0.160  Sum_probs=57.6

Q ss_pred             cccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHh
Q 048253          132 SATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLT  211 (323)
Q Consensus       132 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll  211 (323)
                      ...|.+|.||||+|+..|+.+++++|+++|++   ++.+|..|+||||+|+..++.                 +++++|+
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---i~~~d~~g~tpLh~A~~~~~~-----------------~~v~~Ll   77 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGAD---VAAKDKNGSTPLHLAARNGHL-----------------EVVKLLL   77 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHTTCH-----------------HHHHHHH
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHHHcCCH-----------------HHHHHHH
Confidence            34455666666666666666666666666665   666666666666666666666                 6666666


Q ss_pred             hcccccccccccCCCchhhhhhhccCCCchhhhHHHH
Q 048253          212 TRTMIEVNALNANGFMALDTLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       212 ~~g~~~~~~~d~~g~tpl~~A~~~~~~~~~~~i~~~L  248 (323)
                      ++| ++++.+|..|.||+|+|+.    .++.+++++|
T Consensus        78 ~~g-a~~~~~d~~g~tpl~~A~~----~~~~~~~~~L  109 (110)
T 2zgd_A           78 EAG-ADVXAQDKFGKTAFDISID----NGNEDLAEIL  109 (110)
T ss_dssp             HTT-CCTTCCCTTSCCHHHHHHH----HTCHHHHHHH
T ss_pred             HcC-CCccccccCCCcHHHHHHH----cCCHHHHHHh
Confidence            665 6666666666666666666    6666666655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	323
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-09
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-09
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	8e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-08
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	9e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	8e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.002
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	0.003
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	7e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.001
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.002

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (132), Expect = 3e-09
 Identities = 44/244 (18%), Positives = 84/244 (34%), Gaps = 19/244 (7%)

Query: 4   MLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPEL 63
            L+ AA  G       LL++D               PLH A    ++D    +  +    
Sbjct: 135 PLHVAAKYGKVRVAELLLERDAHPNAA---GKNGLTPLHVAVHHNNLDIVKLLLPRGGSP 191

Query: 64  AGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRIDVLEEL 123
                 N ++ LHIA+++  V+  ++LLQ   +         +PLHLAA +G  +++   
Sbjct: 192 H-SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVAL- 249

Query: 124 FRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVA 183
             ++    +     G T LHL  +   +     L+ +              + +      
Sbjct: 250 LLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGN 309

Query: 184 VKLCFQNLVELVEEYCHSKWGY-------------VIRFLTTRTMIEVNALNANGFMALD 230
           +KL    L    +    +K GY             ++  L        N ++++G   L 
Sbjct: 310 IKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG-ASPNEVSSDGTTPLA 368

Query: 231 TLAQ 234
              +
Sbjct: 369 IAKR 372

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 3e-08
 Identities = 43/260 (16%), Positives = 85/260 (32%), Gaps = 57/260 (21%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCF 99
           PLH A+ +GH+     + ++        +    + LH+A++  H +  K LLQ       
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 100 AGDLDGSPLHLAAMKGRIDVLEEL--------------------------------FRTR 127
               D +PLH AA  G  ++++ L                                   +
Sbjct: 62  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 121

Query: 128 PLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLC 187
             + +     G T LH+  K+ ++   + LL+    P   NA    G+T   +A      
Sbjct: 122 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP---NAAGKNGLTPLHVA-----V 173

Query: 188 FQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDKKDWEIEDW 247
             N +++V+                      ++   NG+  L   A+  + +    +  +
Sbjct: 174 HHNNLDIVKLLLPRG-------------GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY 220

Query: 248 KMIGW---KKMRNALMVVAS 264
                    +    L + A 
Sbjct: 221 GGSANAESVQGVTPLHLAAQ 240

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 3e-08
 Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 2/140 (1%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCF 99
           PLH  A  GHV     + +    +        ++ LH+AS   ++  +K LLQ       
Sbjct: 267 PLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNA 325

Query: 100 AGDLDGSPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLD 159
              L  SPLH AA +G  D++  L +    + +     G T L +  +   +     L  
Sbjct: 326 KTKLGYSPLHQAAQQGHTDIVTLLLK-NGASPNEVSSDGTTPLAIAKRLGYISVTDVLKV 384

Query: 160 NMDDPQFLNAEDDYGMTITQ 179
             D+  F+   D + M+  +
Sbjct: 385 VTDETSFVLVSDKHRMSFPE 404

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 3e-07
 Identities = 41/207 (19%), Positives = 75/207 (36%), Gaps = 13/207 (6%)

Query: 2   KSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKP 61
           ++ L+ AA  G    +  LL+ +        +   +       A             +K 
Sbjct: 67  QTPLHCAARIGHTNMVKLLLENNA----NPNLATTAGHTPLHIAAREGHVETVLALLEKE 122

Query: 62  ELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRIDVLE 121
                +    F+ LH+A++   V   + LL+ +     AG    +PLH+A     +D+++
Sbjct: 123 ASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVK 182

Query: 122 ELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLA 181
            L   R  +  +    G T LH+  K NQ++  + LL          AE   G+T   LA
Sbjct: 183 LLLP-RGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN---AESVQGVTPLHLA 238

Query: 182 VAVKLCFQNLVELVEEYCHSKWGYVIR 208
                  +   E+V      +    + 
Sbjct: 239 -----AQEGHAEMVALLLSKQANGNLG 260

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 54.9 bits (131), Expect = 3e-09
 Identities = 29/160 (18%), Positives = 51/160 (31%), Gaps = 9/160 (5%)

Query: 37  SEFPLHAAALLGHVDFEGEIRR--QKPELAGELDSNQFSALHIASQKVHVDKIKALLQVN 94
           SE     AA+ G       +       E+   + +  + A  +A++  H+  +  L ++ 
Sbjct: 90  SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELA 149

Query: 95  PAWCFAG--DLDGSPLHLAAMKGRIDVLEELFRTRPLAAS--ATMIWGETILHLCVKHNQ 150
           P    A     +     LAA  G + VL  L    P  A+               V    
Sbjct: 150 PTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGH 209

Query: 151 LDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQN 190
            + + FLLD    P  L   + +     +  V   +    
Sbjct: 210 HNVINFLLDC---PVMLAYAEIHEFEYGEKYVNPFIARHV 246

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 54.9 bits (131), Expect = 4e-09
 Identities = 15/116 (12%), Positives = 27/116 (23%), Gaps = 4/116 (3%)

Query: 68  DSNQFSALHIASQKVHVDKIKAL--LQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELF 124
                    +A+       +  L  L  +         +      LAA  G + VL  L 
Sbjct: 87  GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLC 146

Query: 125 RTRP-LAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQ 179
              P    +           L  ++  L  L  L +          + +       
Sbjct: 147 ELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRW 202

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 44.5 bits (104), Expect = 8e-06
 Identities = 16/124 (12%), Positives = 28/124 (22%), Gaps = 15/124 (12%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCF 99
                   G       I R               A  +++     D       V  + C 
Sbjct: 226 AEIHEFEYGEKYVNPFIARH-----VNRLKEMHDAFKLSNPDGVFDL------VTKSECL 274

Query: 100 AGDLDGSPLHLAAMKGRIDVLEELFRTRPL----AASATMIWGETILHLCVKHNQLDALK 155
            G      L     +  +D +  L     +      +        +L L ++     A  
Sbjct: 275 QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACA 334

Query: 156 FLLD 159
            LL 
Sbjct: 335 LLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 44.1 bits (103), Expect = 1e-05
 Identities = 16/122 (13%), Positives = 30/122 (24%), Gaps = 13/122 (10%)

Query: 74  ALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAAS 132
           A     +         +             +      L+   G  D++ +       +  
Sbjct: 226 AEIHEFEYGEKYVNPFIA-----RHVNRLKEMHDAFKLSNPDGVFDLVTK-------SEC 273

Query: 133 ATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLV 192
               +    L        LD ++FLL               G     L +A++L  Q   
Sbjct: 274 LQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGAC 333

Query: 193 EL 194
            L
Sbjct: 334 AL 335

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 4e-08
 Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 4/142 (2%)

Query: 35  CLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVN 94
           C+S   +   A  G ++   E       LA   D +  +ALH A    H + ++ LLQ+ 
Sbjct: 1   CVSNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG 60

Query: 95  PAWCFAGDLDGSPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDAL 154
                  D   SPLH+AA  GR ++++ L        +A    G T LH     N+ +  
Sbjct: 61  VPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGA-QVNAVNQNGCTPLHYAASKNRHEIA 119

Query: 155 KFLLDNMDDPQFLNAEDDYGMT 176
             LL+   +P   +A+D Y  T
Sbjct: 120 VMLLEGGANP---DAKDHYEAT 138

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 2e-06
 Identities = 36/210 (17%), Positives = 67/210 (31%), Gaps = 38/210 (18%)

Query: 4   MLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPEL 63
           M+   A  G    L E +  D+ +  R   +  +   LH A   GH +    + +    +
Sbjct: 6   MVCNLAYSGKLEELKESILADKSLATRTDQDSRT--ALHWACSAGHTEIVEFLLQLGVPV 63

Query: 64  AG--------------------------------ELDSNQFSALHIASQKVHVDKIKALL 91
                                              ++ N  + LH A+ K   +    LL
Sbjct: 64  NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL 123

Query: 92  QVNPAWCFAGDLDGSPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQL 151
           +           + + +H AA KG + ++  L   +  + +     G T LHL     ++
Sbjct: 124 EGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKA-STNIQDTEGNTPLHLACDEERV 182

Query: 152 DALKFLLDNMDDPQFLNAEDDYGMTITQLA 181
           +  K L+           E+    T  Q+A
Sbjct: 183 EEAKLLVSQGASI---YIENKEEKTPLQVA 209

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (119), Expect = 9e-08
 Identities = 28/136 (20%), Positives = 47/136 (34%), Gaps = 7/136 (5%)

Query: 40  PLHAAALLGHVDFEGEIRRQK---PELAGELDSNQFSALHIASQKVHVDKIKALLQVNPA 96
            L  AA  GHV+    +  +          +  N      ++S    V+ I  LL  + A
Sbjct: 151 ALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA 210

Query: 97  WCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALK 155
                   G +PL LA  K  + +++ L     +  + T   G+T L L V+       +
Sbjct: 211 DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAE 270

Query: 156 FLLDNMDDPQFLNAED 171
            L          +  D
Sbjct: 271 LLCKRGAST---DCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 1e-07
 Identities = 36/131 (27%), Positives = 54/131 (41%), Gaps = 8/131 (6%)

Query: 68  DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRIDVLEELFRTR 127
                +AL  A++K HV+ +K LL    A   A D  G    + A+    D   E     
Sbjct: 145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHL 204

Query: 128 PLAASATM----IWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVA 183
            L   A +      G+T L L V+   L  ++ LL+       +N  D  G T   L +A
Sbjct: 205 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE--INDTDSDGKTA--LLLA 260

Query: 184 VKLCFQNLVEL 194
           V+L  + + EL
Sbjct: 261 VELKLKKIAEL 271

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 24/161 (14%), Positives = 46/161 (28%), Gaps = 8/161 (4%)

Query: 104 DGSPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDD 163
           D   L  A     +D++++L              G T LH  V+ ++ D ++ LL +  D
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64

Query: 164 PQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNA 223
           P            +              V+L++ +               T     A+  
Sbjct: 65  PVLRKKNGATPFLLA--------AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYG 116

Query: 224 NGFMALDTLAQSKRDKKDWEIEDWKMIGWKKMRNALMVVAS 264
                     +        + ++ +    K    ALM  A 
Sbjct: 117 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 157

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 41/215 (19%), Positives = 70/215 (32%), Gaps = 25/215 (11%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCF 99
            L  A     VD   ++      +  + +   ++ LH A Q    D ++ LL+       
Sbjct: 8   LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67

Query: 100 AGDLDGSPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLD 159
                 +P  LAA+ G + +  +LF ++    +    +G T       + ++ ALKFL  
Sbjct: 68  RKKNGATPFLLAAIAGSVKL-LKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 126

Query: 160 NMDD-------PQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTT 212
              +        +        G T    A               E  H +   V++ L  
Sbjct: 127 RGANVNLRRKTKEDQERLRKGGATALMDAA--------------EKGHVE---VLKILLD 169

Query: 213 RTMIEVNALNANGFMALDTLAQSKRDKKDWEIEDW 247
               +VNA +  G  AL     S  D     I   
Sbjct: 170 EMGADVNACDNMGRNALIHALLSSDDSDVEAITHL 204

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 45/266 (16%), Positives = 87/266 (32%), Gaps = 34/266 (12%)

Query: 3   SMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPE 62
            +L +A        + +LL+    +  +      +  PLH A  +   D   E+  +   
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWT--PLHNAVQMSREDIV-ELLLRHGA 63

Query: 63  LAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRIDVLEE 122
                  N  +   +A+    V  +K  L              +    AA+ G++  L+ 
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123

Query: 123 LFRTRPLAASATMIW---------GETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDY 173
           L++                     G T L    +   ++ LK LLD M     +NA D+ 
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM--GADVNACDNM 181

Query: 174 G------MTITQLAVAVKLCFQNLVEL--------------VEEYCHSKWGYVIRFLTTR 213
           G        ++     V+     L++               +      K   +++ L  +
Sbjct: 182 GRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ 241

Query: 214 TMIEVNALNANGFMALDTLAQSKRDK 239
             IE+N  +++G  AL    + K  K
Sbjct: 242 EHIEINDTDSDGKTALLLAVELKLKK 267

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.0 bits (110), Expect = 1e-06
 Identities = 23/130 (17%), Positives = 40/130 (30%), Gaps = 6/130 (4%)

Query: 138 GETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEE 197
           G+T LHL V H     L FLL      ++L+ ++D G T   LA  +            E
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV------E 62

Query: 198 YCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDKKDWEIEDWKMIGWKKMRN 257
             ++    V+            A           L Q +        + +         +
Sbjct: 63  KLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD 122

Query: 258 ALMVVASLTA 267
                A++ +
Sbjct: 123 TSHAPAAVDS 132

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.3 bits (103), Expect = 7e-06
 Identities = 35/212 (16%), Positives = 57/212 (26%), Gaps = 10/212 (4%)

Query: 63  LAGELDSNQFSALHIASQKVHVDKIKALLQ--VNPAWCFAGDLDG-SPLHLAAMKGRIDV 119
           + G +  +  +ALH+A    H   +  LL       +    +  G + LHLAA+ G    
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 120 LEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQ------FLNAEDDY 173
           +E+               G T LHL  +         LL             +L    D 
Sbjct: 61  VEK-LYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDC 119

Query: 174 GMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLA 233
               +    AV        E        +           T + V  ++ +  M      
Sbjct: 120 TPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRD 179

Query: 234 QSKRDKKDWEIEDWKMIGWKKMRNALMVVASL 265
                 K         +       A  V+  L
Sbjct: 180 AGADLNKPEPTCGRTPLHLAVEAQAASVLELL 211

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.2 bits (95), Expect = 8e-05
 Identities = 35/228 (15%), Positives = 57/228 (25%), Gaps = 28/228 (12%)

Query: 40  PLHAAALLGHVDFEGEI--RRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAW 97
            LH A +  H  F   +       E     +    +ALH+A+       ++ L       
Sbjct: 12  ALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV 71

Query: 98  CFAGDLDGSPLHLAAMKGRIDVLEELFRTRP---------LAASATMIWGETILHLCVKH 148
             A     + LHLA           L + RP             +     +T        
Sbjct: 72  LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVD 131

Query: 149 NQLDALKFLLDNMDDPQF-LNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVI 207
           +Q +         +D +  L AE+  G T   +AV  K      +        +K     
Sbjct: 132 SQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTC 191

Query: 208 RFLTTRTMIE----------------VNALNANGFMALDTLAQSKRDK 239
                   +E                  A    G   L +        
Sbjct: 192 GRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPI 239

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 17/95 (17%), Positives = 38/95 (40%), Gaps = 2/95 (2%)

Query: 34  NCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQV 93
                  LH AA + ++     +  +K     + D +  + + +A+Q+  ++ +  L+Q 
Sbjct: 184 KYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ- 242

Query: 94  NPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTR 127
             A   A D    +   LA      ++++   R R
Sbjct: 243 QGASVEAVDATDHTARQLAQANNHHNIVDIFDRCR 277

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 40.1 bits (92), Expect = 2e-04
 Identities = 15/93 (16%), Positives = 35/93 (37%), Gaps = 5/93 (5%)

Query: 106 SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQ 165
           + LH AA    + +++ L   +          G+T + L  +  +++ + +L+       
Sbjct: 189 TALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV- 247

Query: 166 FLNAEDDYGMTITQLAVAVKLCFQNLVELVEEY 198
              A D    T     +A      N+V++ +  
Sbjct: 248 --EAVDATDHTA--RQLAQANNHHNIVDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 38.6 bits (88), Expect = 6e-04
 Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 8/77 (10%)

Query: 106 SPLHLA-AMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDP 164
           SP+ L     G   + E +  TR            T+LH    ++  +  + L+ +    
Sbjct: 2   SPIKLHTEAAGSYAITEPI--TRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKE 59

Query: 165 QF-----LNAEDDYGMT 176
                  +NA D    T
Sbjct: 60  CIAAGADVNAMDCDENT 76

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 10/92 (10%)

Query: 106 SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQ 165
           + LH+AA KG  +VL+ L + R    +     G T LH      + +A + L++N+ D  
Sbjct: 201 TALHVAAAKGYTEVLKLLIQARY-DVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDM- 258

Query: 166 FLNAEDDYGMTITQLAVAVKLCFQNLVELVEE 197
              A +  G T   +A       ++++  +EE
Sbjct: 259 --EAVNKVGQTAFDVAD------EDILGYLEE 282

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 5/101 (4%)

Query: 68  DSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDGSPLHLAAMKGRIDVLEELFRTR 127
             +  +ALH+A+ K + + +K L+Q             +PLH AA  G+ +    L    
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL 255

Query: 128 PLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLN 168
                A    G+T   +  +    D L +L +       L+
Sbjct: 256 C-DMEAVNKVGQTAFDVADE----DILGYLEELQKKQNLLH 291

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 29/196 (14%), Positives = 57/196 (29%), Gaps = 24/196 (12%)

Query: 5   LYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELA 64
           L+          +  L++     +     + + E  L  A    +    G        L 
Sbjct: 111 LHWLTSIANLELVKHLVKHGSNRLYG---DNMGESCLVKAVKSVNNYDSGTFEALLDYLY 167

Query: 65  GEL---DSNQFSALHIASQ-----------KVHVDKIKALLQVNPAWCFAGDLDG--SPL 108
             L   DS   + LH               K ++D +   +            +   S  
Sbjct: 168 PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKP 227

Query: 109 HLAAMKGRIDVLEELFRTRPLAA--SATMIWGETILHLCVKHNQLDALKFLLDNMDDPQF 166
           +    + +  +LE L     +A   +A    G+T L++  +   +  +  LLD   DP  
Sbjct: 228 NDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADP-- 285

Query: 167 LNAEDDYGMTITQLAV 182
               +  G+       
Sbjct: 286 -FIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 28/207 (13%), Positives = 63/207 (30%), Gaps = 35/207 (16%)

Query: 40  PLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCF 99
           PLH    + +++    + +         D+   S L  A + V+         +      
Sbjct: 110 PLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP 168

Query: 100 AGDL----DGSPLHLAAMKGRID------------VLEELFRTRPLAASATMIWGETILH 143
              L    + + LH   +   +             ++  + + +     +     E+  +
Sbjct: 169 CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPN 228

Query: 144 LCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKW 203
                 +   L+ L         LNA+D  G T   L +A +L   ++V+ + +Y     
Sbjct: 229 DKNGERKDSILENLDLKWIIANMLNAQDSNGDTC--LNIAARLGNISIVDALLDYG---- 282

Query: 204 GYVIRFLTTRTMIEVNALNANGFMALD 230
                        +    N +G   +D
Sbjct: 283 ------------ADPFIANKSGLRPVD 297

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 18/111 (16%), Positives = 40/111 (36%), Gaps = 2/111 (1%)

Query: 3   SMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPE 62
           +    AA    +  +  ++++    I        S+           +    +++     
Sbjct: 191 TGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN 250

Query: 63  LAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAA 112
           +    DSN  + L+IA++  ++  + ALL    A  F  +  G  P+   A
Sbjct: 251 MLNAQDSNGDTCLNIAARLGNISIVDALLDYG-ADPFIANKSGLRPVDFGA 300

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 23/113 (20%), Positives = 37/113 (32%)

Query: 107 PLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQF 166
           PLH A M+     ++EL  ++P         G   LH  V     +   FLL  M++   
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 62

Query: 167 LNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVN 219
            +  DD G T   +A +V                       + +T   +    
Sbjct: 63  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK 115

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 7e-04
 Identities = 22/144 (15%), Positives = 40/144 (27%), Gaps = 1/144 (0%)

Query: 138 GETILHLCVKHNQLDALKFLLDNM-DDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVE 196
           G++ LHL + H +      ++  +  D  FLN +++   T   LAV           L  
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 61

Query: 197 EYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDKKDWEIEDWKMIGWKKMR 256
                   +           +    +        T        K         +    + 
Sbjct: 62  GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH 121

Query: 257 NALMVVASLTATMAFQAGVNPPHG 280
             L +V  L +  A      P +G
Sbjct: 122 GYLGIVELLVSLGADVNAQEPCNG 145

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.001
 Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 2/87 (2%)

Query: 38  EFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAW 97
              LH A++ G++     +     ++  +   N  +ALH+A    + D +  LL+   A 
Sbjct: 112 HTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK-CGAD 170

Query: 98  CFAGDLDG-SPLHLAAMKGRIDVLEEL 123
                  G SP  L   +    + ++L
Sbjct: 171 VNRVTYQGYSPYQLTWGRPSTRIQQQL 197

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 26/147 (17%), Positives = 45/147 (30%), Gaps = 3/147 (2%)

Query: 138 GETILHLCVKHNQLDALKFLLDNMDDPQF-LNAEDDYGMTITQLAVAVKLCFQNLVELVE 196
           G+T LH+ V    L A+  L++        L+  ++   T   L +AV     ++V L+ 
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTP--LHLAVITTLPSVVRLLV 60

Query: 197 EYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDKKDWEIEDWKMIGWKKMR 256
               S         T   +   +         LD+ A    D +    +    +      
Sbjct: 61  TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT 120

Query: 257 NALMVVASLTATMAFQAGVNPPHGPWQ 283
                V  L    A    V+   G   
Sbjct: 121 ECQETVQLLLERGADIDAVDIKSGRSP 147

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	323
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	100.0
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	100.0
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.97
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.97
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.97
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.96
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.96
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.96
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.96
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.96
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.95
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.95
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.93
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.93
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.93
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.92
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.92
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.92
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.9
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.89

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-40  Score=277.65  Aligned_cols=217  Identities=22%  Similarity=0.197  Sum_probs=201.4

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHh
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQ   80 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~   80 (323)
                      .++.|+.+|+.|+++.|+.+++..+...  ..+|..|+||||+|+..|+.+++++|++.+... ...+..+.++++.++.
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~--~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~-~~~~~~~~~~~~~~~~   79 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLA--TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAAS   79 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGG--GCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCS-CCCCTTCCCHHHHHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcC--cCcCCCCCCHHHHHHHhhhhccccccccccccc-cccccccccccccccc
Confidence            3688999999999999999988876543  346888999999999999999999999999887 7778889999999999


Q ss_pred             cCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHh
Q 048253           81 KVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLD  159 (323)
Q Consensus        81 ~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~  159 (323)
                      .++.+++++|+++|+++ +.++..| ||||+|+..|+.+++++|++ .+.+++..+..|.||||+|+..++.+++++|++
T Consensus        80 ~~~~~i~~~Ll~~~~d~-~~~d~~g~tpL~~A~~~~~~e~~~~Ll~-~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~  157 (223)
T d1uoha_          80 AGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLE-GGANPDAKDHYEATAMHRAAAKGNLKMIHILLY  157 (223)
T ss_dssp             HTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             ccccchhHHHhccCcee-EeeCCCCCchhhHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCccchhhhhcCCcchhhhhcc
Confidence            99999999999999998 8899999 99999999999999999999 788999999999999999999999999999999


Q ss_pred             CCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhhccCCC
Q 048253          160 NMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDK  239 (323)
Q Consensus       160 ~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~~~~~~  239 (323)
                      .+.+   ++.+|.+|+||||+|+..|+.                 ++|++|+++| ++++.+|..|+||||+| +    .
T Consensus       158 ~~~~---i~~~d~~g~TpL~~Aa~~g~~-----------------~~v~~LL~~G-ad~~~~d~~g~tpl~~A-~----~  211 (223)
T d1uoha_         158 YKAS---TNIQDTEGNTPLHLACDEERV-----------------EEAKLLVSQG-ASIYIENKEEKTPLQVA-K----G  211 (223)
T ss_dssp             TTCC---SCCCCTTCCCHHHHHHHTTCH-----------------HHHHHHHHTT-CCSCCCCTTSCCHHHHC-C----T
T ss_pred             ccce---eeeccCCCCceeccccccCcH-----------------HHHHHHHHCC-CCCCCCCCCCCCHHHHH-H----C
Confidence            9988   999999999999999999999                 9999999998 99999999999999998 4    5


Q ss_pred             chhhhHHHH
Q 048253          240 KDWEIEDWK  248 (323)
Q Consensus       240 ~~~~i~~~L  248 (323)
                      +..+|+++|
T Consensus       212 ~~~~i~~~L  220 (223)
T d1uoha_         212 GLGLILKRM  220 (223)
T ss_dssp             THHHHHHHH
T ss_pred             CCHHHHhcc
Confidence            777788776

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.8e-40  Score=279.24  Aligned_cols=195  Identities=24%  Similarity=0.171  Sum_probs=175.7

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHh
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQ   80 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~   80 (323)
                      |+||||.||++|+.+++++|++.+++....+.+|..|.||||+||..|+.+++++|+++|+++ +.+|.+|+||||+|+.
T Consensus         9 G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i-~~~d~~g~tpL~~A~~   87 (255)
T d1oy3d_           9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALHLACR   87 (255)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHHHHHTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccc-cccccccchhhhhhhc
Confidence            899999999999999999999998876556667888999999999999999999999999998 8999999999999999


Q ss_pred             cCCHHHHHHHHhcCCccc----------------------------------------------cccCCCC-cHHHHHHH
Q 048253           81 KVHVDKIKALLQVNPAWC----------------------------------------------FAGDLDG-SPLHLAAM  113 (323)
Q Consensus        81 ~g~~~~v~~Ll~~~~~~~----------------------------------------------~~~~~~g-t~L~~A~~  113 (323)
                      .++.+++++|++.+....                                              +.++..| ||||+|+.
T Consensus        88 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~  167 (255)
T d1oy3d_          88 VRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVI  167 (255)
T ss_dssp             TTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHH
T ss_pred             cCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccccccccc
Confidence            999999999986532110                                              3467889 99999999


Q ss_pred             hCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHH
Q 048253          114 KGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVE  193 (323)
Q Consensus       114 ~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~  193 (323)
                      .++.+++++|++.........+..|.||||+|++.|+.+++++|+++|++   ++.+|..|+||||+|+..++.      
T Consensus       168 ~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gad---in~~d~~g~t~L~~A~~~~~~------  238 (255)
T d1oy3d_         168 HKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD---PTARMYGGRTPLGSALLRPNP------  238 (255)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHTSSCH------
T ss_pred             ccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHCCCH------
Confidence            99999999999955444445678899999999999999999999999999   999999999999999999999      


Q ss_pred             HHHHHhhcchHHHHHHHhhccccc
Q 048253          194 LVEEYCHSKWGYVIRFLTTRTMIE  217 (323)
Q Consensus       194 ~l~~~~~~~~~~~v~~Ll~~g~~~  217 (323)
                                 +++++|+++| |+
T Consensus       239 -----------~i~~~Ll~~G-a~  250 (255)
T d1oy3d_         239 -----------ILARLLRAHG-AP  250 (255)
T ss_dssp             -----------HHHHHHHHTT-CC
T ss_pred             -----------HHHHHHHHcC-CC
Confidence                       9999999998 65

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.8e-39  Score=289.67  Aligned_cols=218  Identities=22%  Similarity=0.238  Sum_probs=171.5

Q ss_pred             cHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcC
Q 048253            3 SMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKV   82 (323)
Q Consensus         3 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g   82 (323)
                      ||||.||..|+.++|++|+++|++++.   .|..|+||||+|+..|+.+++++|+++|+++ +.+|.+|+||||+|++.|
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~in~---~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi-~~~~~~g~t~L~~A~~~g   77 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASPNV---SNVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARIG   77 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCC---SSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTSCCHHHHHHHHT
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCCCC---CCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcC
Confidence            899999999999999999999988744   4778999999999999999999999999987 889999999999998888


Q ss_pred             CHHHHHHHH------------------------------------------------------------------hcCCc
Q 048253           83 HVDKIKALL------------------------------------------------------------------QVNPA   96 (323)
Q Consensus        83 ~~~~v~~Ll------------------------------------------------------------------~~~~~   96 (323)
                      +.+++++|+                                                                  +++.+
T Consensus        78 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~  157 (408)
T d1n11a_          78 HTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH  157 (408)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCC
Confidence            776666554                                                                  33333


Q ss_pred             cccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcc--------------------------------------------
Q 048253           97 WCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAA--------------------------------------------  131 (323)
Q Consensus        97 ~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~--------------------------------------------  131 (323)
                      + +..+..+ +|||+|+..|+.+++++|+++ +.++                                            
T Consensus       158 ~-~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l  235 (408)
T d1n11a_         158 P-NAAGKNGLTPLHVAVHHNNLDIVKLLLPR-GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPL  235 (408)
T ss_dssp             T-TCCCSSCCCHHHHHHHTTCHHHHHHHGGG-TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             C-CcCCCcCchHHHHHHHcCCHHHHHHHHhc-CCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHH
Confidence            3 4455566 788888888887777777763 2211                                            


Q ss_pred             ----------------------cccccccccHHHHHHhhCchhHHHHHHhCCCCC-------------------------
Q 048253          132 ----------------------SATMIWGETILHLCVKHNQLDALKFLLDNMDDP-------------------------  164 (323)
Q Consensus       132 ----------------------~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~-------------------------  164 (323)
                                            +..+..|.|||+.|+..++.+++++|+++|++.                         
T Consensus       236 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~  315 (408)
T d1n11a_         236 HLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKF  315 (408)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHH
T ss_pred             HHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeee
Confidence                                  122445677777777777777777776665431                         


Q ss_pred             -----CCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhhccCCC
Q 048253          165 -----QFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDK  239 (323)
Q Consensus       165 -----~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~~~~~~  239 (323)
                           ..+|.+|.+|+||||+|++.|+.                 ++|++|+++| ++++++|.+|+||||+|++    .
T Consensus       316 ll~~g~~in~~d~~G~T~Lh~A~~~g~~-----------------~iv~~Ll~~G-Ad~n~~d~~G~t~L~~A~~----~  373 (408)
T d1n11a_         316 LLQHQADVNAKTKLGYSPLHQAAQQGHT-----------------DIVTLLLKNG-ASPNEVSSDGTTPLAIAKR----L  373 (408)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCH-----------------HHHHHHHHTT-CCSCCCCSSSCCHHHHHHH----T
T ss_pred             eccccccccccCCCCCCHHHHHHHcCCH-----------------HHHHHHHHCC-CCCCCCCCCCCCHHHHHHH----c
Confidence                 12667777888888888888888                 9999999988 8999999999999999999    8


Q ss_pred             chhhhHHHH
Q 048253          240 KDWEIEDWK  248 (323)
Q Consensus       240 ~~~~i~~~L  248 (323)
                      ++.+++++|
T Consensus       374 ~~~~iv~~L  382 (408)
T d1n11a_         374 GYISVTDVL  382 (408)
T ss_dssp             TCHHHHHHH
T ss_pred             CCHHHHHHH
Confidence            888888877

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-37  Score=259.82  Aligned_cols=218  Identities=17%  Similarity=0.140  Sum_probs=192.7

Q ss_pred             CcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc--ccccCCCCCcHHHHHH
Q 048253            2 KSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPEL--AGELDSNQFSALHIAS   79 (323)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~g~tpL~~A~   79 (323)
                      +||||.||++|+.+.|+.|++..+...  ..+|.+|.||||+|+..|+.+++++|+++++++  .+..+..|.+|+|+++
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~--~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~   78 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLL--LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC   78 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGT--TCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcc--cccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccc
Confidence            589999999999999999999766533  345778999999999999999999999999876  2456788999999999


Q ss_pred             hcCCHHHHHHHHhcCCccc-cccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHH
Q 048253           80 QKVHVDKIKALLQVNPAWC-FAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFL  157 (323)
Q Consensus        80 ~~g~~~~v~~Ll~~~~~~~-~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~L  157 (323)
                      ..+..++++.++..+.... ...+..+ ||++.++..++.++++.|+. .+...+..|..|+||||+|+..|+.+++++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  157 (229)
T d1ixva_          79 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIELL  157 (229)
T ss_dssp             HHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccchhhhhhhhhh-hcccccccCCCCCCccchhhhcccccccccc
Confidence            9999999999998887542 3455667 99999999999999999999 7888888999999999999999999999999


Q ss_pred             HhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhhccC
Q 048253          158 LDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKR  237 (323)
Q Consensus       158 l~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~~~~  237 (323)
                      ++.+..  .++.+|.+|+||||+|+..|+.                 ++|++|+++.+++++.+|.+|+||||+|++   
T Consensus       158 l~~~~~--~in~~d~~g~TpLh~A~~~~~~-----------------~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~---  215 (229)
T d1ixva_         158 CGLGKS--AVNWQDKQGWTPLFHALAEGHG-----------------DAAVLLVEKYGAEYDLVDNKGAKAEDVALN---  215 (229)
T ss_dssp             HTTTCC--CSCCCCTTSCCHHHHHHHTTCH-----------------HHHHHHHHHHCCCSCCCCTTSCCTGGGCSC---
T ss_pred             cccccc--cccccccccCCchhhhcccccH-----------------HHHHHHHHhcCCCCCCcCCCCCCHHHHHhh---
Confidence            998743  2899999999999999999999                 999999976349999999999999999987   


Q ss_pred             CCchhhhHHHH
Q 048253          238 DKKDWEIEDWK  248 (323)
Q Consensus       238 ~~~~~~i~~~L  248 (323)
                       .   +++++|
T Consensus       216 -~---~~~~~L  222 (229)
T d1ixva_         216 -E---QVKKFF  222 (229)
T ss_dssp             -H---HHHHHH
T ss_pred             -H---HHHHHH
Confidence             2   566776

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.1e-38  Score=266.66  Aligned_cols=190  Identities=21%  Similarity=0.186  Sum_probs=171.0

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHhCCC--cccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHH
Q 048253           34 NCLSEFPLHAAALLGHVDFEGEIRRQKPE--LAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHL  110 (323)
Q Consensus        34 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~--~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~  110 (323)
                      +++|+||||+||++|+.+++++|++++++  .++.+|..|.||||+|+..|+.+++++|+++|+++ +.++..| ||||+
T Consensus         6 ~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i-~~~d~~g~tpL~~   84 (255)
T d1oy3d_           6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALHL   84 (255)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHHHH
T ss_pred             CcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccc-cccccccchhhhh
Confidence            56799999999999999999999999765  34778999999999999999999999999999999 8899999 99999


Q ss_pred             HHHhCCHHHHHHHHHhCCC----------------------------------------------cccccccccccHHHH
Q 048253          111 AAMKGRIDVLEELFRTRPL----------------------------------------------AASATMIWGETILHL  144 (323)
Q Consensus       111 A~~~g~~~~v~~Ll~~~~~----------------------------------------------~~~~~~~~g~t~Lh~  144 (323)
                      |+..++.+++++|++....                                              .++.+|.+|+||||+
T Consensus        85 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~  164 (255)
T d1oy3d_          85 ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHV  164 (255)
T ss_dssp             HTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHH
T ss_pred             hhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccc
Confidence            9999999999988763211                                              123457789999999


Q ss_pred             HHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccC
Q 048253          145 CVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNAN  224 (323)
Q Consensus       145 A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~  224 (323)
                      |+..++.+++++|++++++.  .+.++..|.||||+|++.++.                 +++++|+++| ++++.+|..
T Consensus       165 A~~~~~~~~v~~Ll~~~~~~--~~~~~~~g~TpL~~A~~~~~~-----------------~~v~~Ll~~g-adin~~d~~  224 (255)
T d1oy3d_         165 AVIHKDAEMVRLLRDAGADL--NKPEPTCGRTPLHLAVEAQAA-----------------SVLELLLKAG-ADPTARMYG  224 (255)
T ss_dssp             HHHTTCHHHHHHHHHHTCCT--TCCCTTTCCCHHHHHHHTTCH-----------------HHHHHHHHTT-CCTTCCCTT
T ss_pred             cccccccccccchhcccccc--cccccccccccccccccccHH-----------------HHHHHHHHCC-CCCCCCCCC
Confidence            99999999999999999873  334578899999999999999                 9999999998 999999999


Q ss_pred             CCchhhhhhhccCCCchhhhHHHH
Q 048253          225 GFMALDTLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       225 g~tpl~~A~~~~~~~~~~~i~~~L  248 (323)
                      |+||||+|+.    .++.+++++|
T Consensus       225 g~t~L~~A~~----~~~~~i~~~L  244 (255)
T d1oy3d_         225 GRTPLGSALL----RPNPILARLL  244 (255)
T ss_dssp             SCCHHHHHHT----SSCHHHHHHH
T ss_pred             CCCHHHHHHH----CCCHHHHHHH
Confidence            9999999999    9999999999

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=9.5e-38  Score=270.99  Aligned_cols=207  Identities=21%  Similarity=0.220  Sum_probs=189.5

Q ss_pred             CcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhc
Q 048253            2 KSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQK   81 (323)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~   81 (323)
                      .|+|+.||..|+.++|++|+++|++++..   |.+|.||||+|+..|+.+++++|++++.+. ...+..+.+||+.|+..
T Consensus        41 ~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~---d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~-~~~~~~~~~~L~~a~~~  116 (291)
T d1s70b_          41 GAVFLAACSSGDTEEVLRLLERGADINYA---NVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASC  116 (291)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHCCCTTCB---CTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred             chHHHHHHHcCCHHHHHHHHHCCCCCCcc---CCCCCcHHHHHHhcCCceeeeeeccccccc-ccccccccccccccccc
Confidence            48999999999999999999999887443   777999999999999999999999999987 78899999999999999


Q ss_pred             CCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCc--------------------------cccc
Q 048253           82 VHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLA--------------------------ASAT  134 (323)
Q Consensus        82 g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~--------------------------~~~~  134 (323)
                      ++.++++.|+++|... ...+..+ +|+++|+..+..+.++.++...+..                          ....
T Consensus       117 ~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (291)
T d1s70b_         117 GYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRH  195 (291)
T ss_dssp             TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred             cccchhhcccccCccc-ccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccc
Confidence            9999999999999887 7788889 9999999999999988887643332                          2345


Q ss_pred             ccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcc
Q 048253          135 MIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRT  214 (323)
Q Consensus       135 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g  214 (323)
                      +..|.||||+|+..|+.+++++|++.|++   +|.+|.+|+||||+|+..|+.                 ++|++|+++|
T Consensus       196 ~~~g~t~L~~a~~~~~~~~~~~Ll~~g~d---in~~~~~g~TpL~~A~~~g~~-----------------~iv~lLl~~G  255 (291)
T d1s70b_         196 AKSGGTALHVAAAKGYTEVLKLLIQARYD---VNIKDYDGWTPLHAAAHWGKE-----------------EACRILVENL  255 (291)
T ss_dssp             TTTCCCHHHHHHHHTCHHHHHHHHTTTCC---TTCCCTTCCCHHHHHHHTTCH-----------------HHHHHHHHTT
T ss_pred             cCCCCChhhHHHHcCChhhhcccccceec---ccccccCCCCHHHHHHHcCCH-----------------HHHHHHHHCC
Confidence            67899999999999999999999999998   899999999999999999999                 9999999998


Q ss_pred             cccccccccCCCchhhhhhh
Q 048253          215 MIEVNALNANGFMALDTLAQ  234 (323)
Q Consensus       215 ~~~~~~~d~~g~tpl~~A~~  234 (323)
                       +|++.+|..|+||||+|++
T Consensus       256 -adv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         256 -CDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             -CCTTCCCTTSCCTTTSCCS
T ss_pred             -CCCCCcCCCCCCHHHHHHH
Confidence             9999999999999999987

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-36  Score=250.74  Aligned_cols=185  Identities=21%  Similarity=0.209  Sum_probs=173.5

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHh
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQ   80 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~   80 (323)
                      |+||||+||..|+.+++++|++.+......   +..+.++++.|+..|+.+++++|++++.++ +.+|.+|+||||+|+.
T Consensus        37 G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~-~~~d~~g~tpL~~A~~  112 (223)
T d1uoha_          37 SRTALHWACSAGHTEIVEFLLQLGVPVNDK---DDAGWSPLHIAASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAAS  112 (223)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHHTCCSCCC---CTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred             CCCHHHHHHHhhhhcccccccccccccccc---cccccccccccccccccchhHHHhccCcee-EeeCCCCCchhhHHHH
Confidence            789999999999999999999998765333   556899999999999999999999999987 8999999999999999


Q ss_pred             cCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHh
Q 048253           81 KVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLD  159 (323)
Q Consensus        81 ~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~  159 (323)
                      .|+.+++++|+++|+++ +.++..| ||||+|+..++.+++++|++ .+.+++..|.+|+||||+|+..|+.+++++|++
T Consensus       113 ~~~~e~~~~Ll~~g~d~-~~~~~~~~t~L~~a~~~~~~~~~~~L~~-~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~  190 (223)
T d1uoha_         113 KNRHEIAVMLLEGGANP-DAKDHYEATAMHRAAAKGNLKMIHILLY-YKASTNIQDTEGNTPLHLACDEERVEEAKLLVS  190 (223)
T ss_dssp             HTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCC-CCcCCCCCccchhhhhcCCcchhhhhcc-ccceeeeccCCCCceeccccccCcHHHHHHHHH
Confidence            99999999999999998 7889999 99999999999999999998 888999999999999999999999999999999


Q ss_pred             CCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhh
Q 048253          160 NMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTT  212 (323)
Q Consensus       160 ~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~  212 (323)
                      +|++   ++.+|.+|+||||+| ..|+.                 +++++|++
T Consensus       191 ~Gad---~~~~d~~g~tpl~~A-~~~~~-----------------~i~~~Ll~  222 (223)
T d1uoha_         191 QGAS---IYIENKEEKTPLQVA-KGGLG-----------------LILKRMVE  222 (223)
T ss_dssp             TTCC---SCCCCTTSCCHHHHC-CTTHH-----------------HHHHHHHC
T ss_pred             CCCC---CCCCCCCCCCHHHHH-HCCCH-----------------HHHhcccC
Confidence            9999   999999999999998 46888                 99999886

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-34  Score=238.04  Aligned_cols=217  Identities=20%  Similarity=0.183  Sum_probs=191.8

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhc----cCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHH
Q 048253            1 MKSMLYEAALKGCEPTLLELLQ----QDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALH   76 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~   76 (323)
                      |+||||.||..|+.+++++|++    .+.+++   ..|..|.||||+|+..|+.+++++|++++++. +..+..|.++++
T Consensus         3 G~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in---~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~~   78 (228)
T d1k1aa_           3 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD---IYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAH   78 (228)
T ss_dssp             TCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSC---CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---ccCCCCCccceehhcccccccccccccccccc-cccccccccccc
Confidence            8999999999999999999986    555553   34778999999999999999999999999987 888999999999


Q ss_pred             HHHhcCCHHHHHHHHhcCCcc---ccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchh
Q 048253           77 IASQKVHVDKIKALLQVNPAW---CFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLD  152 (323)
Q Consensus        77 ~A~~~g~~~~v~~Ll~~~~~~---~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~  152 (323)
                      .|...++.++++.+.......   ........ ++|+.+.........+.|...........+..+.+||+.|+..+..+
T Consensus        79 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~  158 (228)
T d1k1aa_          79 LACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLS  158 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred             cccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhh
Confidence            999999999998887654322   23344556 99999999999999999988555556667778999999999999999


Q ss_pred             HHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhh
Q 048253          153 ALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTL  232 (323)
Q Consensus       153 ~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A  232 (323)
                      +++.++++|.+   .+.+|..|+||||+|+..|+.                 +++++|+++| +|++.+|.+|+||||+|
T Consensus       159 ~~~~~~~~~~~---~~~~d~~g~t~L~~A~~~g~~-----------------~~v~~Ll~~G-ad~n~~d~~G~TpL~~A  217 (228)
T d1k1aa_         159 MVQLLLQHGAN---VNAQMYSGSSALHSASGRGLL-----------------PLVRTLVRSG-ADSSLKNCHNDTPLMVA  217 (228)
T ss_dssp             HHHHHHHTTCC---TTCBCTTSCBHHHHHHHHTCH-----------------HHHHHHHHTT-CCTTCCCTTSCCTTTTC
T ss_pred             hhhhhhhhccc---cccccccCcchHHHHHHcCCH-----------------HHHHHHHHCC-CCCCCCCCCCCCHHHHH
Confidence            99999999887   889999999999999999999                 9999999998 99999999999999999


Q ss_pred             hhccCCCchhhhHH
Q 048253          233 AQSKRDKKDWEIED  246 (323)
Q Consensus       233 ~~~~~~~~~~~i~~  246 (323)
                      ++    .++.+|++
T Consensus       218 ~~----~~~~divk  227 (228)
T d1k1aa_         218 RS----RRVIDILR  227 (228)
T ss_dssp             SS----HHHHHHHT
T ss_pred             Hh----CCCccccC
Confidence            99    88887764

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-34  Score=245.70  Aligned_cols=222  Identities=23%  Similarity=0.163  Sum_probs=186.9

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcc----------------
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELA----------------   64 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~----------------   64 (323)
                      ++|+||.|++.|++++|++|+++|++++..  .+..|.||||+|+..|+.+++++|++.+....                
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~--~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~   82 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQ--EEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCCcCcc--CCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhc
Confidence            368999999999999999999999987544  24469999999999999999999999876541                


Q ss_pred             ----------------cccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccc---------cccCCCC-cHHHHHHHhCCHH
Q 048253           65 ----------------GELDSNQFSALHIASQKVHVDKIKALLQVNPAWC---------FAGDLDG-SPLHLAAMKGRID  118 (323)
Q Consensus        65 ----------------~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~---------~~~~~~g-t~L~~A~~~g~~~  118 (323)
                                      ...+..+.|+++.|+..++...++.++....+..         ......| ||||+|++.|+.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  162 (285)
T d1wdya_          83 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE  162 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHH
T ss_pred             CCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHH
Confidence                            2234556677777777777777777776544331         2334568 9999999999999


Q ss_pred             HHHHHHHhCCCcccccccccccHHHHHHh----hCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHH
Q 048253          119 VLEELFRTRPLAASATMIWGETILHLCVK----HNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVEL  194 (323)
Q Consensus       119 ~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~----~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~  194 (323)
                      ++++|++..+.+++..+..|.++++.+..    .+..+++++|+++|++   ++.+|..|.||||+|+..++.       
T Consensus       163 ~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~---~n~~~~~g~t~L~~a~~~~~~-------  232 (285)
T d1wdya_         163 VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD---VNVRGERGKTPLILAVEKKHL-------  232 (285)
T ss_dssp             HHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC---SSCCCTTSCCHHHHHHHTTCH-------
T ss_pred             HHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCC---CCccCCCCCCccchhhhcCcH-------
Confidence            99999987788999999999988877654    3356799999999998   899999999999999999999       


Q ss_pred             HHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhhccCCCchhhhHHHH
Q 048253          195 VEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       195 l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~~~~~~~~~~i~~~L  248 (323)
                                +++++|+++.+++++.+|.+|.||||+|++    .++.+++++|
T Consensus       233 ----------~~v~~lL~~~g~din~~d~~G~TpL~~A~~----~~~~eiv~~L  272 (285)
T d1wdya_         233 ----------GLVQRLLEQEHIEINDTDSDGKTALLLAVE----LKLKKIAELL  272 (285)
T ss_dssp             ----------HHHHHHHHSSSCCTTCCCTTSCCHHHHHHH----TTCHHHHHHH
T ss_pred             ----------HHHHHHHHcCCCCCcCCCCCCCCHHHHHHH----cCCHHHHHHH
Confidence                      999999987569999999999999999999    9999999998

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=6.4e-35  Score=250.86  Aligned_cols=219  Identities=18%  Similarity=0.179  Sum_probs=181.1

Q ss_pred             CCcHHHHHHHhCCHHHHHHHh--------ccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCC
Q 048253            1 MKSMLYEAALKGCEPTLLELL--------QQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQF   72 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll--------~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~   72 (323)
                      |+||||+||..|+.++|++|+        +.|++++.   +|.+|+||||+|+.+|+.+++++|+++|+++ +.+|.+|.
T Consensus        33 g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~---~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~-n~~~~~g~  108 (277)
T d2fo1e1          33 NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNA---MDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSER  108 (277)
T ss_dssp             CCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTC---CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCC
T ss_pred             CccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccc---cCCCCCeeecccccccccccccccccccccc-cccccccc
Confidence            689999999999999887775        44566543   4778999999999999999999999999997 88899999


Q ss_pred             cHHHHHHhcCCHHHHHHHHhcCCc--cccccCCCC-cHHHHHHHhCCHH---HHHHHHHhC-------CCcccccccccc
Q 048253           73 SALHIASQKVHVDKIKALLQVNPA--WCFAGDLDG-SPLHLAAMKGRID---VLEELFRTR-------PLAASATMIWGE  139 (323)
Q Consensus        73 tpL~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~~g-t~L~~A~~~g~~~---~v~~Ll~~~-------~~~~~~~~~~g~  139 (323)
                      |||++|+..++.++++++...+..  .....+..+ ++.+.+...+..+   .+..+.+..       ....+..+..|+
T Consensus       109 t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  188 (277)
T d2fo1e1         109 SALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGR  188 (277)
T ss_dssp             CHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCC
T ss_pred             ccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCC
Confidence            999999999999999988776432  114556677 8998888877533   344444421       122334567799


Q ss_pred             cHHHHHHhhCchhHHHHHH-hCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccc
Q 048253          140 TILHLCVKHNQLDALKFLL-DNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEV  218 (323)
Q Consensus       140 t~Lh~A~~~g~~~~v~~Ll-~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~  218 (323)
                      ||||+++..++.+++++++ ..+.+   .+.+|..|+||||+|+..|+.                 ++|++|+++| +++
T Consensus       189 t~L~~~~~~~~~~~~~~~l~~~~~~---~~~~d~~g~tpL~~A~~~g~~-----------------~iv~~Ll~~g-adi  247 (277)
T d2fo1e1         189 TALHYAAQVSNMPIVKYLVGEKGSN---KDKQDEDGKTPIMLAAQEGRI-----------------EVVMYLIQQG-ASV  247 (277)
T ss_dssp             CTHHHHHSSCCHHHHHHHHHHSCCC---TTCCCTTCCCHHHHHHHHTCH-----------------HHHHHHHHTT-CCS
T ss_pred             Ccccccccccccccccccccccccc---ccccCCCCCCHHHHHHHcCCH-----------------HHHHHHHHCc-CCC
Confidence            9999999999999998765 55555   888999999999999999999                 9999999998 999


Q ss_pred             cccccCCCchhhhhhhccCCCchhhhHHHH
Q 048253          219 NALNANGFMALDTLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       219 ~~~d~~g~tpl~~A~~~~~~~~~~~i~~~L  248 (323)
                      +.+|.+|+||||+|++    .++.+|+++|
T Consensus       248 n~~d~~G~T~L~~A~~----~~~~~iv~lL  273 (277)
T d2fo1e1         248 EAVDATDHTARQLAQA----NNHHNIVDIF  273 (277)
T ss_dssp             SCCCSSSCCHHHHHHH----TTCHHHHHHH
T ss_pred             CCcCCCCCCHHHHHHH----cCCHHHHHHH
Confidence            9999999999999999    9999999998

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=1.4e-33  Score=232.62  Aligned_cols=206  Identities=21%  Similarity=0.174  Sum_probs=189.1

Q ss_pred             HHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhc
Q 048253           14 EPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQV   93 (323)
Q Consensus        14 ~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~   93 (323)
                      .|+|++|+++|++++...  |.+|.||||+||..|+.+++++|++.++++ +.++..+.++++.++..++..........
T Consensus         2 ~~~v~~Ll~~g~din~~~--d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~-n~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATM--DKTGETSLHLAARFARADAAKRLLDAGADA-NSQDNTGRTPLHAAVAADAMGVFQILLRN   78 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHH--HHHCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             HHHHHHHHHCCCCcCcCc--CCCCCCHHHHHHHcCCHHHHHHHHhhcccc-ccccccccccccccccccccccccccccc
Confidence            489999999999986542  456999999999999999999999999998 89999999999999999999888887776


Q ss_pred             CCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCccccc
Q 048253           94 NPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDD  172 (323)
Q Consensus        94 ~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~  172 (323)
                      ...........+ ++.+.+.........+.|.. .+.+++..+..|+|||+.++.++..++++.+++.+.+   ++.+|.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~---~~~~d~  154 (209)
T d1ot8a_          79 RATNLNARMHDGTTPLILAARLAIEGMVEDLIT-ADADINAADNSGKTALHWAAAVNNTEAVNILLMHHAN---RDAQDD  154 (209)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC---TTCCCT
T ss_pred             cccccccccccccccccccccccchhhhhhhhh-hcccccccCCCCCCcchhhcccCcceeeeeecccccc---cccccc
Confidence            665545566677 99999999999999999988 8888999999999999999999999999999999988   899999


Q ss_pred             CCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhhccCCCchhhhHHHH
Q 048253          173 YGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       173 ~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~~~~~~~~~~i~~~L  248 (323)
                      +|.||||+|+..|+.                 +++++|+++| +|++.+|..|+||||+|++    .++.+|+++|
T Consensus       155 ~g~TpL~~A~~~g~~-----------------~~v~~Ll~~g-ad~n~~d~~g~Tpl~~A~~----~~~~~iv~lL  208 (209)
T d1ot8a_         155 KDETPLFLAAREGSY-----------------EASKALLDNF-ANREITDHMDRLPRDVASE----RLHHDIVRLL  208 (209)
T ss_dssp             TCCCHHHHHHHTTCH-----------------HHHHHHHHTT-CCTTCCCTTSCCHHHHHHH----TTCHHHHHHH
T ss_pred             ccccccchhccccHH-----------------HHHHHHHHCC-CCCCCcCCCCCCHHHHHHH----cCCHHHHhhc
Confidence            999999999999999                 9999999998 8999999999999999999    9999999998

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-34  Score=238.39  Aligned_cols=149  Identities=24%  Similarity=0.251  Sum_probs=69.3

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCcc-----ccccCCCC-cH
Q 048253           34 NCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAW-----CFAGDLDG-SP  107 (323)
Q Consensus        34 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~-----~~~~~~~g-t~  107 (323)
                      |.+|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..++.++++.|+..+...     .......| ||
T Consensus        36 d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~-~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~  114 (221)
T d1iknd_          36 NNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTC  114 (221)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCH
T ss_pred             CCCCCccccccccccccccccccccccccc-cccccccccccccccccccccccchhhhhcccccccccccccccccchh
Confidence            444555555555555555555555555544 444555555555555555555555554443221     11222334 45


Q ss_pred             HHHHHHhCCHHHHHHHHHhCCCcccc-cccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcc
Q 048253          108 LHLAAMKGRIDVLEELFRTRPLAASA-TMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKL  186 (323)
Q Consensus       108 L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~  186 (323)
                      ||.|+..++.+++++|++. +..++. .+.+|.||||+|++.|+.+++++|+++|++   ++.+|.+|+||||+|+..++
T Consensus       115 l~~a~~~~~~~~~~~l~~~-~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad---~~~~~~~G~tpl~~A~~~~~  190 (221)
T d1iknd_         115 LHLASIHGYLGIVELLVSL-GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD---VNRVTYQGYSPYQLTWGRPS  190 (221)
T ss_dssp             HHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC---SCCCCTTCCCGGGGCTTSSC
T ss_pred             hhHHhhcCChhheeeeccc-CcccccccccCCCCccccccccccHHHHHHHHhcCCc---ccccCCCCCCHHHHHHHCCC
Confidence            5555555555555444442 222222 223344555555555555555555544444   44444445555555544444


Q ss_pred             h
Q 048253          187 C  187 (323)
Q Consensus       187 ~  187 (323)
                      .
T Consensus       191 ~  191 (221)
T d1iknd_         191 T  191 (221)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-34  Score=238.77  Aligned_cols=159  Identities=16%  Similarity=0.078  Sum_probs=112.0

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-----ccccCCCCCcHH
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPEL-----AGELDSNQFSAL   75 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-----~~~~~~~g~tpL   75 (323)
                      |+||||+|+..|+.+++++|++.+++++.   .|..|.||||+|+..|+.++++.|++.+...     .......|.|||
T Consensus        39 g~TpLh~A~~~~~~~iv~~L~~~g~d~~~---~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l  115 (221)
T d1iknd_          39 QQTPLHLAVITNQPEIAEALLGAGCDPEL---RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL  115 (221)
T ss_dssp             CCCHHHHHHHTTCHHHHHCCCSCCCCSCC---CCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHH
T ss_pred             CCccccccccccccccccccccccccccc---cccccccccccccccccccccchhhhhcccccccccccccccccchhh
Confidence            56777777777777777777777766533   3566777777777777777777777664322     233445567777


Q ss_pred             HHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHH
Q 048253           76 HIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDAL  154 (323)
Q Consensus        76 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v  154 (323)
                      |.|+..++.+++++|+..|+.+....+.+| ||||+|++.|+.+++++|++ .+++++.+|.+|+||||+|+..++.+++
T Consensus       116 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~-~gad~~~~~~~G~tpl~~A~~~~~~~~~  194 (221)
T d1iknd_         116 HLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK-CGADVNRVTYQGYSPYQLTWGRPSTRIQ  194 (221)
T ss_dssp             HHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHT-TTCCSCCCCTTCCCGGGGCTTSSCHHHH
T ss_pred             hHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHh-cCCcccccCCCCCCHHHHHHHCCCHHHH
Confidence            777777777777777777777644455567 77777777777777777777 6677777777777777777777777777


Q ss_pred             HHHHhCCCC
Q 048253          155 KFLLDNMDD  163 (323)
Q Consensus       155 ~~Ll~~g~~  163 (323)
                      ++|++.+.+
T Consensus       195 ~~l~~~~~~  203 (221)
T d1iknd_         195 QQLGQLTLE  203 (221)
T ss_dssp             HHHHTTSCG
T ss_pred             HHHHHcCCc
Confidence            777776543

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.3e-32  Score=227.55  Aligned_cols=192  Identities=17%  Similarity=0.124  Sum_probs=175.4

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc-ccccCCCCCcHHHHHH
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPEL-AGELDSNQFSALHIAS   79 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~g~tpL~~A~   79 (323)
                      |+||||+|+..|+.+++++|++++++++.....+..|.+|+|+|+..+..++++.++..+... ....+..+.||++.++
T Consensus        34 G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  113 (229)
T d1ixva_          34 GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV  113 (229)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHH
T ss_pred             CCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            789999999999999999999999887666667888999999999999999999999887643 2456788999999999


Q ss_pred             hcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHH
Q 048253           80 QKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLL  158 (323)
Q Consensus        80 ~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll  158 (323)
                      ..++.+++++|+..+.+. ..++..| ||||+|+..|+.+++++|++..+.+++.+|.+|+||||+|+..|+.+++++|+
T Consensus       114 ~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll  192 (229)
T d1ixva_         114 GKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV  192 (229)
T ss_dssp             HTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             ccchhhhhhhhhhhcccc-cccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHH
Confidence            999999999999999998 7788999 99999999999999999999767889999999999999999999999999999


Q ss_pred             h-CCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhccccc
Q 048253          159 D-NMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIE  217 (323)
Q Consensus       159 ~-~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~  217 (323)
                      + .|++   ++.+|.+|+||||+|+.   .                 +++++|+++| +|
T Consensus       193 ~~~gad---~~~~d~~g~t~l~~A~~---~-----------------~~~~~Ll~~g-~d  228 (229)
T d1ixva_         193 EKYGAE---YDLVDNKGAKAEDVALN---E-----------------QVKKFFLNNV-VD  228 (229)
T ss_dssp             HHHCCC---SCCCCTTSCCTGGGCSC---H-----------------HHHHHHHHHC-CC
T ss_pred             HhcCCC---CCCcCCCCCCHHHHHhh---H-----------------HHHHHHHHcC-CC
Confidence            7 5888   99999999999999973   4                 8889999988 54

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=1.3e-30  Score=225.59  Aligned_cols=213  Identities=20%  Similarity=0.154  Sum_probs=182.2

Q ss_pred             hCCHHHHHHHhccCcccccccc------CCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCH
Q 048253           11 KGCEPTLLELLQQDQLIIGRVG------VNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHV   84 (323)
Q Consensus        11 ~g~~~~v~~Ll~~~~~~~~~~~------~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~   84 (323)
                      ....+.++.++....+......      .+..+.|||+.||..|+.++|++|+++|+++ +.+|.+|+||||+|+..|+.
T Consensus         8 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~G~~~~v~~Ll~~Gadv-n~~d~~G~T~L~~A~~~g~~   86 (291)
T d1s70b_           8 QKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNV   86 (291)
T ss_dssp             HHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBCTTCCBHHHHHHHTTCH
T ss_pred             HhhHHHHHHHHhCcccccCchhhccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCcHHHHHHhcCCc
Confidence            3345566666665544322211      1223569999999999999999999999997 99999999999999999999


Q ss_pred             HHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCC-
Q 048253           85 DKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMD-  162 (323)
Q Consensus        85 ~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~-  162 (323)
                      +++++|+++|.+. ...+..+ +||+.|+..++.++++.|++ .+...+..|..+.+|+++|+..+..+.++.++.... 
T Consensus        87 eiv~~Ll~~~~~~-~~~~~~~~~~L~~a~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~  164 (291)
T d1s70b_          87 DMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLIS-QGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGV  164 (291)
T ss_dssp             HHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTC
T ss_pred             eeeeeeccccccc-ccccccccccccccccccccchhhcccc-cCcccccccccCccccccccccccchhcccccccccc
Confidence            9999999999998 6777888 99999999999999999999 778888899999999999999999999988875421 


Q ss_pred             -----------------------CCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhccccccc
Q 048253          163 -----------------------DPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVN  219 (323)
Q Consensus       163 -----------------------~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~  219 (323)
                                             ........+..|.||||.|+..|+.                 +++++|++.| ++++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~-----------------~~~~~Ll~~g-~din  226 (291)
T d1s70b_         165 DIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYT-----------------EVLKLLIQAR-YDVN  226 (291)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCH-----------------HHHHHHHTTT-CCTT
T ss_pred             ccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCCh-----------------hhhcccccce-eccc
Confidence                                   1112455778999999999999999                 9999999998 8999


Q ss_pred             ccccCCCchhhhhhhccCCCchhhhHHHH
Q 048253          220 ALNANGFMALDTLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       220 ~~d~~g~tpl~~A~~~~~~~~~~~i~~~L  248 (323)
                      .+|..|+||||+|++    .++.+++++|
T Consensus       227 ~~~~~g~TpL~~A~~----~g~~~iv~lL  251 (291)
T d1s70b_         227 IKDYDGWTPLHAAAH----WGKEEACRIL  251 (291)
T ss_dssp             CCCTTCCCHHHHHHH----TTCHHHHHHH
T ss_pred             ccccCCCCHHHHHHH----cCCHHHHHHH
Confidence            999999999999999    9999999998

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.6e-30  Score=232.16  Aligned_cols=181  Identities=21%  Similarity=0.200  Sum_probs=164.6

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccc------------------------------cCCCCCCCHHHHHHHcCCH
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRV------------------------------GVNCLSEFPLHAAALLGHV   50 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~------------------------------~~~~~g~t~Lh~A~~~g~~   50 (323)
                      |.+|||.|+..|+.+++++|++++++++...                              ..+..|.||||+|+..++.
T Consensus       165 ~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~  244 (408)
T d1n11a_         165 GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHA  244 (408)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcH
Confidence            5689999999999999999999887653221                              1345678899999999999


Q ss_pred             HHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCC
Q 048253           51 DFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPL  129 (323)
Q Consensus        51 ~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~  129 (323)
                      ++++++++.+... +..+..|.||++.|++.++.+++++|+++|+++ +..+..+ ||||.++..++.++++++++ .+.
T Consensus       245 ~~~~~~~~~~~~~-~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~-~~~~~~~~t~L~~~~~~~~~~~~~~ll~-~g~  321 (408)
T d1n11a_         245 EMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHYGNIKLVKFLLQ-HQA  321 (408)
T ss_dssp             HHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCSSCCCHHHHHHHSSCSHHHHHHHH-TTC
T ss_pred             hHhhhhhcccccc-ccccCCCCChhhhhhhcCcHHHHHHHHHCCCcc-ccccccccccchhhcccCcceeeeeecc-ccc
Confidence            9999999988776 788999999999999999999999999999998 7777888 99999999999999999999 889


Q ss_pred             cccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcch
Q 048253          130 AASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLC  187 (323)
Q Consensus       130 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~  187 (323)
                      +++.+|.+|+||||+|+++|+.++|++|+++|++   +|.+|.+|+||||+|++.|+.
T Consensus       322 ~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd---~n~~d~~G~t~L~~A~~~~~~  376 (408)
T d1n11a_         322 DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS---PNEVSSDGTTPLAIAKRLGYI  376 (408)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---SCCCCSSSCCHHHHHHHTTCH
T ss_pred             cccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHcCCH
Confidence            9999999999999999999999999999999999   999999999999999999999

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.5e-29  Score=217.90  Aligned_cols=200  Identities=23%  Similarity=0.177  Sum_probs=170.7

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccc------------------------------cCCCCCCCHHHHHHHcCCH
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRV------------------------------GVNCLSEFPLHAAALLGHV   50 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~------------------------------~~~~~g~t~Lh~A~~~g~~   50 (323)
                      |+||||.|+..|+.+++++|++.+.......                              ..+..+.++|+.|+..|+.
T Consensus        39 g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~  118 (285)
T d1wdya_          39 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKV  118 (285)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCH
T ss_pred             CCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCccccchhhhhcccccccccCCCchhHHHHHhcch
Confidence            6899999999999999999999876542221                              1345678899999999999


Q ss_pred             HHHHHHHHhCCCc---------ccccCCCCCcHHHHHHhcCCHHHHHHHHhc-CCccccccCCCC-cHHHHHHHhC----
Q 048253           51 DFEGEIRRQKPEL---------AGELDSNQFSALHIASQKVHVDKIKALLQV-NPAWCFAGDLDG-SPLHLAAMKG----  115 (323)
Q Consensus        51 ~~v~~Ll~~~~~~---------~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g-t~L~~A~~~g----  115 (323)
                      ..++.++....+.         ....+..|.||||+|+++|+.+++++|+++ |+++ +..+..+ ++++.+...+    
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~  197 (285)
T d1wdya_         119 KALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSD  197 (285)
T ss_dssp             HHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTT
T ss_pred             hhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCc-ccccCCCCcccccccccccchH
Confidence            9999998875543         123456799999999999999999999975 7777 7788888 8877765543    


Q ss_pred             CHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhC-CCCCCCCcccccCCCcHHHHHHhhcchhhhHHHH
Q 048253          116 RIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDN-MDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVEL  194 (323)
Q Consensus       116 ~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~  194 (323)
                      ..+++++|++ .+++++.++..|.||||+|++.|+.+++++|++. |++   ++.+|.+|+||||+|++.|+.       
T Consensus       198 ~~~i~~~Li~-~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~d---in~~d~~G~TpL~~A~~~~~~-------  266 (285)
T d1wdya_         198 VEAITHLLLD-HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE---INDTDSDGKTALLLAVELKLK-------  266 (285)
T ss_dssp             HHHHHHHHHH-TTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCC---TTCCCTTSCCHHHHHHHTTCH-------
T ss_pred             HHHHHHHHHH-CCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCC---CcCCCCCCCCHHHHHHHcCCH-------
Confidence            4579999999 7889999999999999999999999999999984 777   999999999999999999999       


Q ss_pred             HHHHhhcchHHHHHHHhhccccccccccc
Q 048253          195 VEEYCHSKWGYVIRFLTTRTMIEVNALNA  223 (323)
Q Consensus       195 l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~  223 (323)
                                ++|++|+++| ||+|++|.
T Consensus       267 ----------eiv~~Ll~~G-Ad~n~~d~  284 (285)
T d1wdya_         267 ----------KIAELLCKRG-ASTDCGDL  284 (285)
T ss_dssp             ----------HHHHHHHHHS-SCSCCSSC
T ss_pred             ----------HHHHHHHHCC-CCCCcccC
Confidence                      9999999999 99999884

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.8e-30  Score=203.00  Aligned_cols=143  Identities=20%  Similarity=0.180  Sum_probs=75.7

Q ss_pred             CHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCH
Q 048253           39 FPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRI  117 (323)
Q Consensus        39 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~  117 (323)
                      +|||+||..|+.++|++|+++|+++ +.+|.+|+||||+|+ .|+.+++++|+++|+++ ..++..+ ++++.++..++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~-n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMK-LGNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc-CccCCcccccccccc-ccccccccccccccccc-ccccccCccccccccccccc
Confidence            4555555555555555555555554 555555555555443 44555555555555554 4444555 555555555555


Q ss_pred             HHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcch
Q 048253          118 DVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLC  187 (323)
Q Consensus       118 ~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~  187 (323)
                      +.++.|++ .+..++..+..|.+|||+|+..++.+++++|+++++.  ..+.+|.+|+||||+|++.++.
T Consensus        80 ~~~~~l~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~--~~~~~d~~g~TpL~~A~~~~~~  146 (156)
T d1ihba_          80 DTLQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS--NVGHRNHKGDTACDLARLYGRN  146 (156)
T ss_dssp             HHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC--CTTCCCTTSCCHHHHHHHTTCH
T ss_pred             cccccccc-ccccccccccccccccccccccccccccccccccccc--cccccCCCCCCHHHHHHHcCCH
Confidence            55555555 4444555555555555555555555555555555431  1455555555555555555555

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6e-30  Score=201.12  Aligned_cols=153  Identities=23%  Similarity=0.274  Sum_probs=144.2

Q ss_pred             cHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcC
Q 048253            3 SMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKV   82 (323)
Q Consensus         3 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g   82 (323)
                      ++||.||..|++++|++|+++|++++.   +|..|.||||+|+ .|+.+++++|+++++++ +.++..|.+|++.++..+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~---~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~~~~~~~l~~~~~~~   77 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNA---QNGFGRTALQVMK-LGNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAG   77 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTC---CCTTSCCHHHHCC-SSCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCc---cCCcccccccccc-ccccccccccccccccc-ccccccCccccccccccc
Confidence            799999999999999999999998744   4778999999886 79999999999999998 899999999999999999


Q ss_pred             CHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCC
Q 048253           83 HVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNM  161 (323)
Q Consensus        83 ~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g  161 (323)
                      +.++++.|++.+.++ +..+..| +|+|+|+..++.+++++|+++.+.+.+.+|.+|+||||+|++.++.+++++|+++|
T Consensus        78 ~~~~~~~l~~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          78 FLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccccccccc-cccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            999999999999998 7788899 99999999999999999999777789999999999999999999999999999986

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=5.1e-29  Score=205.04  Aligned_cols=179  Identities=20%  Similarity=0.137  Sum_probs=165.5

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHh
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQ   80 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~   80 (323)
                      |+||||+||..|+.+++++|++.++.++..   +..+.++++.++..++.....................|.++.+.+..
T Consensus        23 G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (209)
T d1ot8a_          23 GETSLHLAARFARADAAKRLLDAGADANSQ---DNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAAR   99 (209)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCC---CTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhhccccccc---ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            789999999999999999999999887443   67799999999999999988888777666556677889999999999


Q ss_pred             cCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHh
Q 048253           81 KVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLD  159 (323)
Q Consensus        81 ~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~  159 (323)
                      .......+.|...++++ ..++..| |||++++..+..++++.+++ .+.+++..|..|.||||+|+..|+.+++++|++
T Consensus       100 ~~~~~~~~~L~~~~~~~-~~~~~~~~t~l~~~~~~~~~~~~~~l~~-~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~  177 (209)
T d1ot8a_         100 LAIEGMVEDLITADADI-NAADNSGKTALHWAAAVNNTEAVNILLM-HHANRDAQDDKDETPLFLAAREGSYEASKALLD  177 (209)
T ss_dssp             TTCTTHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             ccchhhhhhhhhhcccc-cccCCCCCCcchhhcccCcceeeeeecc-ccccccccccccccccchhccccHHHHHHHHHH
Confidence            99999999999999998 7788999 99999999999999999999 788899999999999999999999999999999


Q ss_pred             CCCCCCCCcccccCCCcHHHHHHhhcch
Q 048253          160 NMDDPQFLNAEDDYGMTITQLAVAVKLC  187 (323)
Q Consensus       160 ~g~~~~~~~~~d~~g~t~Lh~A~~~~~~  187 (323)
                      +|++   ++.+|.+|+||||+|++.|+.
T Consensus       178 ~gad---~n~~d~~g~Tpl~~A~~~~~~  202 (209)
T d1ot8a_         178 NFAN---REITDHMDRLPRDVASERLHH  202 (209)
T ss_dssp             TTCC---TTCCCTTSCCHHHHHHHTTCH
T ss_pred             CCCC---CCCcCCCCCCHHHHHHHcCCH
Confidence            9999   899999999999999999999

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.96  E-value=1.7e-31  Score=237.24  Aligned_cols=220  Identities=15%  Similarity=0.107  Sum_probs=119.4

Q ss_pred             CcHHHHHHHhCCHHHHHH---HhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccC--CCCCcHHH
Q 048253            2 KSMLYEAALKGCEPTLLE---LLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELD--SNQFSALH   76 (323)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~---Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~--~~g~tpL~   76 (323)
                      +||||.||.+|+.+++++   |++.+++++..   |.+|.||||+||++||.++|++|+++|+++ +..+  .+|+||||
T Consensus        91 ~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~---~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~-~~~~~~~~g~t~L~  166 (346)
T d2ajaa1          91 EVICFVAAITGCSSALDTLCLLLTSDEIVKVI---QAENYQAFRLAAENGHLHVLNRLCELAPTE-IMAMIQAENYHAFR  166 (346)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTC--CCSSCC-----CHHHHHHHHHHHHTTCHHHHHHHHHSCTTT-HHHHHSHHHHHHHH
T ss_pred             CcHHHHHHHhCCHHHHHHHHHHHhCCCccccc---CCCCCCHHHHHHHCCCHHHHHHHHHcCCCc-cccccccCCCChhH
Confidence            466666666666555444   45555554332   444666666666666666666666666655 4333  34666666


Q ss_pred             HHHhcCCHHHHHHHHhcCCccc--cccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccc-------cccHHHHHH
Q 048253           77 IASQKVHVDKIKALLQVNPAWC--FAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIW-------GETILHLCV  146 (323)
Q Consensus        77 ~A~~~g~~~~v~~Ll~~~~~~~--~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-------g~t~Lh~A~  146 (323)
                      +|++.|+.+++++|++.|++..  +..+.++ ||+|.|+..|+.+++++|++ .+++++..+..       +.++++.+.
T Consensus       167 ~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~~~~  245 (346)
T d2ajaa1         167 LAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLD-CPVMLAYAEIHEFEYGEKYVNPFIARH  245 (346)
T ss_dssp             HHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTT-SHHHHHHHHHCTTTTTTTTHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHh-CCCCcchHHHHHHHcCcHhhhHHHHHh
Confidence            6666666666666666665431  1223334 55556666666666666666 44433322211       122233332


Q ss_pred             hhCchhHHHHHHhCCCCCCCCccccc-------CCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccc---
Q 048253          147 KHNQLDALKFLLDNMDDPQFLNAEDD-------YGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMI---  216 (323)
Q Consensus       147 ~~g~~~~v~~Ll~~g~~~~~~~~~d~-------~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~---  216 (323)
                      ..+..+....+.....+. ..+..+.       .+.++|+.|+..++.                 +++++|++.+..   
T Consensus       246 ~~~~~~~~~~l~~a~~~~-~~~~~~~~~~~~~~~~~~~l~~a~~~~~l-----------------d~v~~Ll~~~~~~~~  307 (346)
T d2ajaa1         246 VNRLKEMHDAFKLSNPDG-VFDLVTKSECLQGFYMLRNLIRRNDEVLL-----------------DDIRFLLSIPGIKAL  307 (346)
T ss_dssp             HHHHHHHHTTTTTTSSSS-CCCCSSHHHHHHHHHHHHHHHHHCCGGGH-----------------HHHHHHHTSTTTGGG
T ss_pred             hccchHHHHHHHHhcccc-cHhHHhcccccccchhhhHHHHHhcCChH-----------------HHHHHHHhCcChhhh
Confidence            222222222222111110 0111111       122455555555555                 999999987732   


Q ss_pred             -cccccccCCCchhhhhhhccCCCchhhhHHHH
Q 048253          217 -EVNALNANGFMALDTLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       217 -~~~~~d~~g~tpl~~A~~~~~~~~~~~i~~~L  248 (323)
                       +.+..+.+|+||||+|++    .|+.+++++|
T Consensus       308 ~~~~~~~~~g~T~LhlA~~----~Gn~e~v~lL  336 (346)
T d2ajaa1         308 APTATIPGDANELLRLALR----LGNQGACALL  336 (346)
T ss_dssp             SSCCSSTTCCCHHHHHHHH----HTCTTHHHHH
T ss_pred             cccccCCCCCCcHHHHHHH----cCcHHHHHHH
Confidence             233445689999999999    9999999998

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.3e-29  Score=196.45  Aligned_cols=140  Identities=24%  Similarity=0.228  Sum_probs=72.9

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHH
Q 048253           41 LHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDV  119 (323)
Q Consensus        41 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~  119 (323)
                      ||.||..|+.++|++|++++....+.+|..|+||||+|+. |+.+++++|++++.++ +..+..| +|++.++..++.++
T Consensus         6 L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~-~~~~~~~~~~l~~~~~~~~~~~   83 (156)
T d1bd8a_           6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGFLDT   83 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcccccccc-cccccccccccccccc-cccccccccccccccccccccc
Confidence            5555555555555555544322224555555555555442 4455555555555554 4444445 55555555555555


Q ss_pred             HHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcch
Q 048253          120 LEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLC  187 (323)
Q Consensus       120 v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~  187 (323)
                      ++++++ .+.+++.+|.+|+||||+|+..|+.+++++|+ .|++   ++.+|.+|+||||+|++.|+.
T Consensus        84 ~~~~l~-~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~---~~~~d~~G~TpL~~A~~~g~~  146 (156)
T d1bd8a_          84 LKVLVE-HGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESD---LHRRDARGLTPLELALQRGAQ  146 (156)
T ss_dssp             HHHHHH-TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSC---TTCCCTTSCCHHHHHHHSCCH
T ss_pred             cccccc-cccccccccCCCCeeecccccccccccccccc-cccc---ccccCCCCCCHHHHHHHcCCH
Confidence            555555 44445555555555555555555555555444 3444   455555555555555555555

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=7.7e-29  Score=194.03  Aligned_cols=143  Identities=22%  Similarity=0.250  Sum_probs=114.0

Q ss_pred             CCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCC
Q 048253           38 EFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGR  116 (323)
Q Consensus        38 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~  116 (323)
                      .||||.||+.|+.++|++|+++|++. + .|..|+||||+|++.++.++++.++...... ...+..+ ++++.++...+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~-~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   79 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTC
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCc-c-cccCCCccccccccccccccccccccccccc-ccccccccccccccccccc
Confidence            47888888888888888888888765 3 5778888888888888888888887777666 4455556 88888888888


Q ss_pred             HHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcch
Q 048253          117 IDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLC  187 (323)
Q Consensus       117 ~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~  187 (323)
                      .+++++++. .+.+.+.+|.+|+||||+|+..|+.+++++|+++|++   ++.+|.+|.||||+|+..|+.
T Consensus        80 ~~~~~~l~~-~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad---~~~~d~~g~Tpl~~A~~~g~~  146 (153)
T d1awcb_          80 ANIVEVLLK-HGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD---VHTQSKFCKTAFDISIDNGNE  146 (153)
T ss_dssp             HHHHHHHHT-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCH
T ss_pred             ceeeecccc-cCCccccccccCchHHHhhhhcchhheeeeccccccC---CcccCCCCCCHHHHHHHcCCH
Confidence            888888877 6677777888888888888888888888888888887   778888888888888888888

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2e-28  Score=192.55  Aligned_cols=150  Identities=22%  Similarity=0.236  Sum_probs=137.2

Q ss_pred             cHHHHHHHhCCHHHHHHHhccCc-cccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhc
Q 048253            3 SMLYEAALKGCEPTLLELLQQDQ-LIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQK   81 (323)
Q Consensus         3 t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~   81 (323)
                      ..|+.||..|+.++|++|++.+. ++   +..|..|+||||+|+ .|+.+++++|++++.++ +..+..|.+|++.++..
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~---n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~-~~~~~~~~~~l~~~~~~   78 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHP---DALNRFGKTALQVMM-FGSTAIALELLKQGASP-NVQDTSGTSPVHDAART   78 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCT---TCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCC---CccCCCCCccccccc-ccccccccccccccccc-ccccccccccccccccc
Confidence            46999999999999999998744 43   345788999999987 58999999999999997 88899999999999999


Q ss_pred             CCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhC
Q 048253           82 VHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDN  160 (323)
Q Consensus        82 g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~  160 (323)
                      ++.+++++++++|+++ +.++..| ||||+|++.|+.+++++|++  +.+++.+|.+|+||||+|+..|+.+++++|+++
T Consensus        79 ~~~~~~~~~l~~~~~~-n~~~~~~~t~L~~A~~~~~~~i~~~L~~--~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          79 GFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAA--ESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHT--TSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccccccccccc-ccccCCCCeeeccccccccccccccccc--cccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            9999999999999998 7789999 99999999999999998875  578899999999999999999999999999986

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.96  E-value=4.8e-28  Score=207.49  Aligned_cols=189  Identities=19%  Similarity=0.155  Sum_probs=161.5

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCC--CcccccCCCCCcHHHHH
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKP--ELAGELDSNQFSALHIA   78 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~--~~~~~~~~~g~tpL~~A   78 (323)
                      |+||||+|++.|+.++|++|+++|++++.   .|..|.|||++|+..++.++++++.....  ..++..+..+.++.+.+
T Consensus        74 G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~---~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  150 (277)
T d2fo1e1          74 ENTPLMLAVLARRRRLVAYLMKAGADPTI---YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIV  150 (277)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCSCC---CCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHH
T ss_pred             CCeeecccccccccccccccccccccccc---ccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHH
Confidence            78999999999999999999999988644   37779999999999999999999887642  22366788899999999


Q ss_pred             HhcCCHH---HHHHHHhcCCc-------cccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHh
Q 048253           79 SQKVHVD---KIKALLQVNPA-------WCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVK  147 (323)
Q Consensus        79 ~~~g~~~---~v~~Ll~~~~~-------~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~  147 (323)
                      ...+..+   .++.+......       .....+..| ||||+++..++.+++++++...+.+.+.+|..|+||||+|+.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~  230 (277)
T d2fo1e1         151 AHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQ  230 (277)
T ss_dssp             HHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHH
T ss_pred             HhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHH
Confidence            8877654   33444433221       113456778 999999999999999998877899999999999999999999


Q ss_pred             hCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhh
Q 048253          148 HNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTT  212 (323)
Q Consensus       148 ~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~  212 (323)
                      .|+.+++++|+++|++   ++.+|.+|+||||+|++.|+.                 ++|++|++
T Consensus       231 ~g~~~iv~~Ll~~gad---in~~d~~G~T~L~~A~~~~~~-----------------~iv~lL~~  275 (277)
T d2fo1e1         231 EGRIEVVMYLIQQGAS---VEAVDATDHTARQLAQANNHH-----------------NIVDIFDR  275 (277)
T ss_dssp             HTCHHHHHHHHHTTCC---SSCCCSSSCCHHHHHHHTTCH-----------------HHHHHHHT
T ss_pred             cCCHHHHHHHHHCcCC---CCCcCCCCCCHHHHHHHcCCH-----------------HHHHHHHH
Confidence            9999999999999999   999999999999999999999                 99998875

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=8.3e-28  Score=188.09  Aligned_cols=149  Identities=21%  Similarity=0.257  Sum_probs=139.6

Q ss_pred             CcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhc
Q 048253            2 KSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQK   81 (323)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~   81 (323)
                      .||||.||+.|+.++|++|++++++.+    .|..|.||||+|+..++.++++.++...... ...+..+.++++.++..
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~----~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   77 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT----TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC----CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc----cccCCCccccccccccccccccccccccccc-ccccccccccccccccc
Confidence            489999999999999999999998753    3778999999999999999999999988877 67788899999999999


Q ss_pred             CCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHH
Q 048253           82 VHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFL  157 (323)
Q Consensus        82 g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~L  157 (323)
                      .+.+++++++.++++. ..++..| ||||+|+..|+.+++++|++ .+++++..|.+|+||||+|+.+|+.+++++|
T Consensus        78 ~~~~~~~~l~~~~~~~-~~~~~~g~T~L~~A~~~g~~~iv~~ll~-~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          78 GHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIK-YGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccceeeecccccCCcc-ccccccCchHHHhhhhcchhheeeeccc-cccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            9999999999999998 7889999 99999999999999999999 7899999999999999999999999999876

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=6.8e-29  Score=216.31  Aligned_cols=177  Identities=15%  Similarity=0.058  Sum_probs=124.1

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCC-------HHHHHHHHhcCCccccccCCCC-
Q 048253           34 NCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVH-------VDKIKALLQVNPAWCFAGDLDG-  105 (323)
Q Consensus        34 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~-------~~~v~~Ll~~~~~~~~~~~~~g-  105 (323)
                      |..|+||||+||..|+.++|++|+++|+++ +.+|..|+||||.|+..++       .++++++..   .+ ...+..| 
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---~~-~~~d~~g~  178 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---CL-ILEDSMNR  178 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---GG-GEECTTCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh---hh-hhcccccC
Confidence            677999999999999999999999999998 8999999999999998765       244454433   23 5678888 


Q ss_pred             cHHHHHHHhCC----HH--------HHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccC
Q 048253          106 SPLHLAAMKGR----ID--------VLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDY  173 (323)
Q Consensus       106 t~L~~A~~~g~----~~--------~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~  173 (323)
                      ||||+++..+.    ..        ++.++++............+.++++.+........+..+.....-...+|.+|.+
T Consensus       179 t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~  258 (301)
T d1sw6a_         179 TILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSN  258 (301)
T ss_dssp             CHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTT
T ss_pred             CHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCC
Confidence            99999887554    22        3445555445555555666777777776665544443321100001127899999


Q ss_pred             CCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhh
Q 048253          174 GMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLA  233 (323)
Q Consensus       174 g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~  233 (323)
                      |+||||+|++.|+.                 ++|++|+++| ++++++|+.|+|||++|+
T Consensus       259 G~TpLh~A~~~g~~-----------------~iv~~Ll~~G-Ad~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         259 GDTCLNIAARLGNI-----------------SIVDALLDYG-ADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             SCCHHHHHHHHCCH-----------------HHHHHHHHTT-CCTTCCCTTSCCGGGGTC
T ss_pred             CCCHHHHHHHcCCH-----------------HHHHHHHHCC-CCCCCCCCCCCCHHHHcC
Confidence            99999999999999                 9999999998 999999999999999996

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.1e-25  Score=185.38  Aligned_cols=187  Identities=21%  Similarity=0.194  Sum_probs=165.6

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHH----hCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHH
Q 048253           36 LSEFPLHAAALLGHVDFEGEIRR----QKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHL  110 (323)
Q Consensus        36 ~g~t~Lh~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~  110 (323)
                      +|+||||+||.+|+.++++.|++    .+.++ +.+|.+|+||||+|+..|+.+++++|+++|++. +.....+ ++++.
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~i-n~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~   79 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAHL   79 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CccCCCCCccceehhcccccccccccccccccc-ccccccccccccc
Confidence            49999999999999999999885    67776 899999999999999999999999999999998 7788888 99999


Q ss_pred             HHHhCCHHHHHHHHHhC---CCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcch
Q 048253          111 AAMKGRIDVLEELFRTR---PLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLC  187 (323)
Q Consensus       111 A~~~g~~~~v~~Ll~~~---~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~  187 (323)
                      |...++.++++.+....   ....+.......++|+.+.........+.|.....+.  ....+..|.+||+.|+..+..
T Consensus        80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~l~~a~~~~~~  157 (228)
T d1k1aa_          80 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI--DAVDIKSGRSPLIHAVENNSL  157 (228)
T ss_dssp             HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTTCCCHHHHHHHTTCH
T ss_pred             ccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhcccccc--ccccccchhhHHHHHHHhhhh
Confidence            99999999998887742   2233445667889999999999999999998876552  445677899999999999999


Q ss_pred             hhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhhccCCCchhhhHHHH
Q 048253          188 FQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQSKRDKKDWEIEDWK  248 (323)
Q Consensus       188 ~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~~~~~~~~~~i~~~L  248 (323)
                                       .+++.+++++ .+++.+|..|.|||++|+.    .++.+++++|
T Consensus       158 -----------------~~~~~~~~~~-~~~~~~d~~g~t~L~~A~~----~g~~~~v~~L  196 (228)
T d1k1aa_         158 -----------------SMVQLLLQHG-ANVNAQMYSGSSALHSASG----RGLLPLVRTL  196 (228)
T ss_dssp             -----------------HHHHHHHHTT-CCTTCBCTTSCBHHHHHHH----HTCHHHHHHH
T ss_pred             -----------------hhhhhhhhhc-cccccccccCcchHHHHHH----cCCHHHHHHH
Confidence                             9999999998 7999999999999999999    8999999988

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.4e-26  Score=174.97  Aligned_cols=119  Identities=20%  Similarity=0.161  Sum_probs=98.0

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC--cHHHHHHHh
Q 048253           37 SEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG--SPLHLAAMK  114 (323)
Q Consensus        37 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g--t~L~~A~~~  114 (323)
                      +.++||+|+..|+.++|++|+++|+++ +.+|..|.||||+|+ .|+.+++++|+++|+++ +.++..+  ||||+|++.
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~-n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAARE   79 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCcc-ccccccccccccccc-ccccccccccccccccc-cccccccccccccccccc
Confidence            568888888888888888888888887 788888888888664 67888888888888887 5555554  688888888


Q ss_pred             CCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHh
Q 048253          115 GRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLD  159 (323)
Q Consensus       115 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~  159 (323)
                      |+.+++++|++ .+.+++.+|..|+||||+|+++|+.+++++|++
T Consensus        80 g~~~~v~~Ll~-~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          80 GFLDTLVVLHR-AGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             TCHHHHHHHHH-HTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccc-cccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            88888888888 578888888888888888888888888888875

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=6.3e-27  Score=203.75  Aligned_cols=176  Identities=13%  Similarity=-0.030  Sum_probs=120.7

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCH---HHHHHHHHhCCCcccccCCCCCcHHHH
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHV---DFEGEIRRQKPELAGELDSNQFSALHI   77 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~---~~v~~Ll~~~~~~~~~~~~~g~tpL~~   77 (323)
                      |+||||+||..|+.++|++|+++|++++..   |..|+||||.||..++.   +.++.|++........+|..|+||||+
T Consensus       107 G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~---d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~lh~  183 (301)
T d1sw6a_         107 GNTPLHWLTSIANLELVKHLVKHGSNRLYG---DNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHH  183 (301)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTBC---CTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCcC---CcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHHHH
Confidence            789999999999999999999999987544   77899999999987752   122223332222236789999999999


Q ss_pred             HHhcCC----HH--------HHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHH--hCCCcccccccccccHH
Q 048253           78 ASQKVH----VD--------KIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFR--TRPLAASATMIWGETIL  142 (323)
Q Consensus        78 A~~~g~----~~--------~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~--~~~~~~~~~~~~g~t~L  142 (323)
                      ++..+.    ..        +++++...+..........+ ++++.+........+..+..  .....++.+|.+|+|||
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpL  263 (301)
T d1sw6a_         184 IIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCL  263 (301)
T ss_dssp             HHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHH
T ss_pred             HHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHH
Confidence            886544    22        34455566555544455555 66666555444333322111  01233688899999999


Q ss_pred             HHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHH
Q 048253          143 HLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAV  182 (323)
Q Consensus       143 h~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~  182 (323)
                      |+|+++|+.++|++|+++|++   ++.+|..|.|||++|+
T Consensus       264 h~A~~~g~~~iv~~Ll~~GAd---~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         264 NIAARLGNISIVDALLDYGAD---PFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HHHHHHCCHHHHHHHHHTTCC---TTCCCTTSCCGGGGTC
T ss_pred             HHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHcC
Confidence            999999999999999999999   8999999999999985

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=3.9e-26  Score=170.69  Aligned_cols=107  Identities=22%  Similarity=0.288  Sum_probs=97.8

Q ss_pred             cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhc
Q 048253          106 SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVK  185 (323)
Q Consensus       106 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~  185 (323)
                      |||++|++.|+.+++++|++ .+.+++.+|..|+||||+|+..|+.+++++|+++|++   ++.+|..|+||||+|+..|
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~-~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~d---in~~d~~g~tpLh~A~~~~   79 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVA-KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD---INAPDKHHITPLLSAVYEG   79 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHT-TTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCT---TTCCSSSCSCHHHHHHTTT
T ss_pred             hHHHHHHHCCCHHHHHHHHH-hhhccccccccccccccccccccccccccccccccce---eeecccccccchhhhhhcC
Confidence            78999999999999999998 7888899999999999999999999999999999988   8899999999999999999


Q ss_pred             chhhhHHHHHHHHhhcchHHHHHHHhhcccccccccccCCCchhhhhhh
Q 048253          186 LCFQNLVELVEEYCHSKWGYVIRFLTTRTMIEVNALNANGFMALDTLAQ  234 (323)
Q Consensus       186 ~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~tpl~~A~~  234 (323)
                      +.                 +++++|+++| +|++.+|.+|+||+|+|..
T Consensus        80 ~~-----------------~~v~~Ll~~G-ad~~~~d~~G~t~l~~a~~  110 (118)
T d1myoa_          80 HV-----------------SCVKLLLSKG-ADKTVKGPDGLTALEATDN  110 (118)
T ss_dssp             CC-----------------HHHHHHHTTC-CCSSSSSSSTCCCCCTCSS
T ss_pred             ch-----------------hhhhhhhccc-ccceeeCCCCCCHHHHHhH
Confidence            99                 9999999988 8999999999999998854

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.92  E-value=4.1e-27  Score=208.83  Aligned_cols=196  Identities=14%  Similarity=0.025  Sum_probs=147.7

Q ss_pred             CCcHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcc--cccCCCCCcHHHHH
Q 048253            1 MKSMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELA--GELDSNQFSALHIA   78 (323)
Q Consensus         1 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~--~~~~~~g~tpL~~A   78 (323)
                      |+||||.||++|+.++|++|++.+++++.. ..+.+|.||||+||..||.++|++|++.++...  +..+.+|.||+|.|
T Consensus       126 g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~-~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A  204 (346)
T d2ajaa1         126 NYQAFRLAAENGHLHVLNRLCELAPTEIMA-MIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAA  204 (346)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHSCTTTHHH-HHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHcCCCcccc-ccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHH
Confidence            579999999999999999999999886443 223458999999999999999999999987652  34556778899999


Q ss_pred             HhcCCHHHHHHHHhcCCcccc------ccCCCC-cHHHHHHHhCCHHHHHHHHHhC-CCccccc-------ccccccHHH
Q 048253           79 SQKVHVDKIKALLQVNPAWCF------AGDLDG-SPLHLAAMKGRIDVLEELFRTR-PLAASAT-------MIWGETILH  143 (323)
Q Consensus        79 ~~~g~~~~v~~Ll~~~~~~~~------~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~-------~~~g~t~Lh  143 (323)
                      +++|+.+++++|++.|+++..      .....+ ++++.+...+..+....+.... ....+..       ...+.++++
T Consensus       205 ~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~  284 (346)
T d2ajaa1         205 VGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLI  284 (346)
T ss_dssp             STTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHH
T ss_pred             hhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHH
Confidence            999999999999999876521      122344 6666666655555444443311 1111111       223457899


Q ss_pred             HHHhhCchhHHHHHHhCCCCCCC--CcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhhcc
Q 048253          144 LCVKHNQLDALKFLLDNMDDPQF--LNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTTRT  214 (323)
Q Consensus       144 ~A~~~g~~~~v~~Ll~~g~~~~~--~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~~g  214 (323)
                      .|+..++.+++++|++.+.....  .+..+.+|+||||+|++.|+.                 ++|++|++.+
T Consensus       285 ~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~-----------------e~v~lLL~~p  340 (346)
T d2ajaa1         285 RRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQ-----------------GACALLLSIP  340 (346)
T ss_dssp             HHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCT-----------------THHHHHTTSH
T ss_pred             HHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcH-----------------HHHHHHhCCC
Confidence            99999999999999998764322  334556799999999999999                 9999999865

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.4e-25  Score=169.37  Aligned_cols=119  Identities=22%  Similarity=0.216  Sum_probs=111.5

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccc-cHHHHHHhh
Q 048253           71 QFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGE-TILHLCVKH  148 (323)
Q Consensus        71 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~-t~Lh~A~~~  148 (323)
                      +.++||+|++.|+.+++++|+++|+++ +.++..| ||+|.|+ .|+.+++++|++ .+.+++..+..+. ||||+|++.
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~-n~~~~~g~t~l~~a~-~g~~~~v~~Ll~-~ga~~~~~~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLL-HGAEPNCADPATLTRPVHDAARE   79 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHT-TTCCCCCCCTTTCCCHHHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCcc-ccccccccccccccc-cccccccccccc-ccccccccccccccccccccccc
Confidence            568999999999999999999999998 8899999 9999775 799999999999 7889999988876 699999999


Q ss_pred             CchhHHHHHHhCCCCCCCCcccccCCCcHHHHHHhhcchhhhHHHHHHHHhhcchHHHHHHHhh
Q 048253          149 NQLDALKFLLDNMDDPQFLNAEDDYGMTITQLAVAVKLCFQNLVELVEEYCHSKWGYVIRFLTT  212 (323)
Q Consensus       149 g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~~~l~~~~~~~~~~~v~~Ll~  212 (323)
                      |+.+++++|+++|++   ++.+|.+|+||||+|++.|+.                 +++++|++
T Consensus        80 g~~~~v~~Ll~~ga~---~~~~d~~G~T~l~~A~~~g~~-----------------~~v~~Lls  123 (125)
T d1bi7b_          80 GFLDTLVVLHRAGAR---LDVRDAWGRLPVDLAEELGHR-----------------DVARYLRA  123 (125)
T ss_dssp             TCHHHHHHHHHHTCC---SSCCCTTCCCHHHHHHHHTCH-----------------HHHHHHSS
T ss_pred             ccccccccccccccc---cccccCCCCCHHHHHHHcCCH-----------------HHHHHHHh
Confidence            999999999999999   999999999999999999999                 99999986

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=3e-26  Score=171.33  Aligned_cols=104  Identities=22%  Similarity=0.221  Sum_probs=65.5

Q ss_pred             cHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCch
Q 048253           73 SALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQL  151 (323)
Q Consensus        73 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~  151 (323)
                      |||++|++.|+.+++++|+++|+++ +.++..| ||||+|+..|+.+++++|++ .+.+++.+|..|+||||+|+.+|+.
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~-n~~~~~g~t~lh~A~~~~~~~~~~~ll~-~g~din~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLL-KGADINAPDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCC-CCCSSSSCCTTHHHHHHSTTTHHHHHHH-SSCTTTCCSSSCSCHHHHHHTTTCC
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhcc-cccccccccccccccccccccccccccc-ccceeeecccccccchhhhhhcCch
Confidence            5666666666666666666666655 5555556 66666666666666666666 5556666666666666666666666


Q ss_pred             hHHHHHHhCCCCCCCCcccccCCCcHHHHH
Q 048253          152 DALKFLLDNMDDPQFLNAEDDYGMTITQLA  181 (323)
Q Consensus       152 ~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A  181 (323)
                      +++++|+++|++   ++.+|.+|+||||+|
T Consensus        82 ~~v~~Ll~~Gad---~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          82 SCVKLLLSKGAD---KTVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHHHTTCCC---SSSSSSSTCCCCCTC
T ss_pred             hhhhhhhccccc---ceeeCCCCCCHHHHH
Confidence            666666666666   666666666666665

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=9e-25  Score=166.02  Aligned_cols=118  Identities=19%  Similarity=0.171  Sum_probs=77.5

Q ss_pred             cHHHHHHHhCCHHHHHHHhccCccccccccCCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcC
Q 048253            3 SMLYEAALKGCEPTLLELLQQDQLIIGRVGVNCLSEFPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKV   82 (323)
Q Consensus         3 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g   82 (323)
                      ++|+.||..|+.++|++|++++++++.   +|.+|+||||+|+..|+.+++++|++.+++. +.+|.+|+||||+|+..|
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~---~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~-~~~d~~g~tpLh~A~~~g   78 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSL---PNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCN   78 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCC---CCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccc---ccccccccccccccccccccccccccccccc-ccccccCcccccccchhh
Confidence            456777777777777777777766532   3556777777777777777777777777665 666777777777777777


Q ss_pred             CHHHHHHHHhcCCccccccC-CCC-cHHHHH--HHhCCHHHHHHHHH
Q 048253           83 HVDKIKALLQVNPAWCFAGD-LDG-SPLHLA--AMKGRIDVLEELFR  125 (323)
Q Consensus        83 ~~~~v~~Ll~~~~~~~~~~~-~~g-t~L~~A--~~~g~~~~v~~Ll~  125 (323)
                      +.+++++|+++|+++ +..+ ..+ ||++++  +..|+.+++++|+.
T Consensus        79 ~~~~v~~Ll~~ga~v-~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          79 NVQVCKFLVESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             CHHHHHHHHHTTCCT-TCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHcCCCc-ccccCCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence            777777777777766 3333 334 555443  45566667776665

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.1e-24  Score=163.91  Aligned_cols=119  Identities=25%  Similarity=0.233  Sum_probs=105.9

Q ss_pred             CHHHHHHHcCCHHHHHHHHHhCCCcccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCH
Q 048253           39 FPLHAAALLGHVDFEGEIRRQKPELAGELDSNQFSALHIASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRI  117 (323)
Q Consensus        39 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~  117 (323)
                      ++|+.||..|+.++|++|+++|+++ +.+|.+|+||||+|+..|+.+++++|++.|+++ +.+|.+| ||||+|+..|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~-n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~-~~~d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCc-ccccccccccccccccccccccccccccccccc-ccccccCcccccccchhhHH
Confidence            5789999999999999999999987 899999999999999999999999999999998 8889999 999999999999


Q ss_pred             HHHHHHHHhCCCccccccc-ccccHHHHH--HhhCchhHHHHHHhC
Q 048253          118 DVLEELFRTRPLAASATMI-WGETILHLC--VKHNQLDALKFLLDN  160 (323)
Q Consensus       118 ~~v~~Ll~~~~~~~~~~~~-~g~t~Lh~A--~~~g~~~~v~~Ll~~  160 (323)
                      +++++|++ .+++++..+. .++||++++  +..|+.+++++|++.
T Consensus        81 ~~v~~Ll~-~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          81 QVCKFLVE-SGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHHH-TTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHH-cCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            99999999 7888887664 577876665  577889999999874

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=5.3e-23  Score=160.39  Aligned_cols=121  Identities=18%  Similarity=0.127  Sum_probs=97.6

Q ss_pred             HHHHHHHhCCHHHHHHHhccCccccccc---cCCCCCCCHHHHHHHc---CCHHHHHHHHHhCCCcccccCCCCCcHHHH
Q 048253            4 MLYEAALKGCEPTLLELLQQDQLIIGRV---GVNCLSEFPLHAAALL---GHVDFEGEIRRQKPELAGELDSNQFSALHI   77 (323)
Q Consensus         4 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~---~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~   77 (323)
                      .|+.|++.+++..+..++..+.+.....   ..+..|+||||+|+..   |+.+++++|+++|+++ +.+|.+|+||||+
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi-n~~d~~g~TpLh~   87 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh-hhhhhhhcccccc
Confidence            4678888999998888888876643321   2245688888888874   5778888888888887 8888888888888


Q ss_pred             HHhcCCHHHHHHHHhcCCccccccCCCC-cHHHHHHHhCCHHHHHHHHHh
Q 048253           78 ASQKVHVDKIKALLQVNPAWCFAGDLDG-SPLHLAAMKGRIDVLEELFRT  126 (323)
Q Consensus        78 A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~A~~~g~~~~v~~Ll~~  126 (323)
                      |++.|+.+++++|+++|+++ +.+|..| ||||+|++.|+.+++++|++.
T Consensus        88 A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~i~~~L~~~  136 (154)
T d1dcqa1          88 CCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQA  136 (154)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccccccccccccccccCccc-cccCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            88888888888888888888 7788888 888888888888888888884

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=1.3e-22  Score=158.23  Aligned_cols=123  Identities=16%  Similarity=0.141  Sum_probs=110.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCcc-----cccCCCCCcHHHHHHhc---CCHHHHHHHHhcCCccccccCCCC-cHHHH
Q 048253           40 PLHAAALLGHVDFEGEIRRQKPELA-----GELDSNQFSALHIASQK---VHVDKIKALLQVNPAWCFAGDLDG-SPLHL  110 (323)
Q Consensus        40 ~Lh~A~~~g~~~~v~~Ll~~~~~~~-----~~~~~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g-t~L~~  110 (323)
                      .|+.|++.+++..+..++..+.++.     ...+..|+||||+|++.   ++.+++++|+++|+++ +.++..| ||||+
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi-n~~d~~g~TpLh~   87 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh-hhhhhhhcccccc
Confidence            4568889999999999999887652     12367899999999974   6789999999999998 8899999 99999


Q ss_pred             HHHhCCHHHHHHHHHhCCCcccccccccccHHHHHHhhCchhHHHHHHhCCCCC
Q 048253          111 AAMKGRIDVLEELFRTRPLAASATMIWGETILHLCVKHNQLDALKFLLDNMDDP  164 (323)
Q Consensus       111 A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~  164 (323)
                      |+..|+.+++++|++ .+++++.+|.+|+||||+|++.|+.+++++|++.++..
T Consensus        88 A~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          88 CCLTDNAECLKLLLR-GKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             HHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             ccccccccccccccc-cCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence            999999999999999 79999999999999999999999999999999977653