Citrus Sinensis ID: 048256

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100--
Protein Sequence
LVNFNYPSITVPKLSGSITVTRRVKNVGSPGTYQARVKTPQGVSVTIAPKSLKFINVGEEKSFKVIIKAKNASVTKDYVFGELIWSDEKQHQVRSPIVVKAV
Secondary Structure (PSIPRED)
cccccccEEEEEcccccEEEEEEEEEcccccEEEEEEEccccEEEEEEccEEEEcccccEEEEEEEEEEEEccccccEEEEEEEEEcccccEEEcEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccEEEccccccEEEEEEEEccccccEEEEEEEccccEEEEEEccEEEEEcccEEEEEEEEEEEEcccccccEEEEEEEEEcccEEEEEEEEEEEEc
Coil and Loop (DISEMBL)
lvnfnypsitvpklsgsitvtrrvknvgspgtyqarvktpqgvsvtiapkslkfinvgeeKSFKVIIKAKnasvtkdyvfgeliwsdekqhqvrspivvkav
Flexible Loop (DISEMBL)
lvnfnypsitvpklsgsitvtrrvknvgspgtyqarvktpqgvsvtiapkslkfinvgeekSFKViikaknasvtKDYVFGELiwsdekqhqvrspivvkav
Low Complexity Region (SEG)
LVNFNYPSITVPKLSGSITVTRRVKNVGSPGTYQARVKTPQGVSVTIAPKSLKFINVGEEKSFKVIIKAKNASVTKDYVFGELIWSDEKQHQVRSPIVVKAV
Disordered region (IsUnstruct)
*******SITVPKLSGSITVTRRVKNVGSPGTYQARVKTPQGVSVTIAPKSLKFINVGEEKSFKVIIKAKNASVTKDYVFGELIWSD***************
Disordered Region (DISOPRED)
LVNFNYPSITVPKLSGSITVTRRVKNVGSPGTYQARVKTPQGVSVTIAPKSLKFINVGEEKSFKVIIKAKNASVTKDYVFGELIWSDEKQHQVRSPIVVKAV
Disordered Region (DISEMBL)
LVNFNYPSITVPKLSGSITVTRRVKNVGSPGTYQARVKTPQGVSVTIAPKSLKFINVGEEKSFKVIIKAKNASVTKDYVFGELIWSDEKQHQVRSPIVVKAV
Disordered Region (DISPRO)
*VNFNYPSITVPKLSGSITVTRRVKNVGSPGTYQARVKTPQGVSVTIAPKSLKFINVGEEKSFKVIIKAKNASVTKDYVFGELIWSDEKQHQVRSPIVVKAV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
LVNFNYPSITVPKLSGSITVTRRVKNVGSPGTYQARVKTPQGVSVTIAPKSLKFINVGEEKSFKVIIKAKNASVTKDYVFGELIWSDEKQHQVRSPIVVKAV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	102	2.2.26 [Sep-21-2011]
Q9LLL8	749	Xylem serine proteinase 1	no	no	0.931	0.126	0.421	2e-12
O64495	775	Subtilisin-like protease	no	no	0.950	0.125	0.409	2e-09
O65351	757	Subtilisin-like protease	no	no	0.960	0.129	0.336	1e-07
Q39547	731	Cucumisin OS=Cucumis melo	N/A	no	0.941	0.131	0.307	6e-07

>sp|Q9LLL8|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/102 (42%), Positives = 61/102 (59%), Gaps = 7/102 (6%)

Query: 3   NFNYPSITV----PKLSGSITVTRRVKNVGSPGT-YQARVKTPQGVSVTIAPKSLKFINV 57
           + NYP+I +     K S      RRV NVG P + Y A V+ P+GV +T+ P+SL F   
Sbjct: 644 SLNYPTIQLTLRSAKTSTLAVFRRRVTNVGPPSSVYTATVRAPKGVEITVEPQSLSFSKA 703

Query: 58  GEEKSFKVIIKAKNASVTKDYVFGELIWSDEKQHQVRSPIVV 99
            +++SFKV++KAK  +  K  V G L+W   + H VRSPIV+
Sbjct: 704 SQKRSFKVVVKAKQMTPGK-IVSGLLVWKSPR-HSVRSPIVI 743

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: -

>sp|O64495|SDD1_ARATH Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 58/105 (55%), Gaps = 8/105 (7%)

Query: 3   NFNYPSITVPKLSGSIT--VTRRVKNVGSPGT-YQARVKTPQGVSVTIAPKSLKFINVGE 59
           + NYPSI V    G  T  +TRRV NVGSP + Y   VK P+G+ V + PK L F +V +
Sbjct: 666 SLNYPSIAVIFKRGKTTEMITRRVTNVGSPNSIYSVNVKAPEGIKVIVNPKRLVFKHVDQ 725

Query: 60  EKSFKV--IIKAKN-ASVTKDYVFGELIW--SDEKQHQVRSPIVV 99
             S++V  ++K KN       +  G+L W  S     +VRSPI V
Sbjct: 726 TLSYRVWFVLKKKNRGGKVASFAQGQLTWVNSHNLMQRVRSPISV 770

Serine protease involved in the negative regulation of stomatal density and distribution. Positive regulator of water use efficiency (WUE).

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|O65351|SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 3/101 (2%)

Query: 1   LVNFNYPSITVP-KLSGSITVTRRVKNVGSPGTYQARVKT-PQGVSVTIAPKSLKFINVG 58
           + + NYPS  V     G+   TR V +VG  GTY  +V +   GV +++ P  L F    
Sbjct: 655 VADLNYPSFAVNVDGVGAYKYTRTVTSVGGAGTYSVKVTSETTGVKISVEPAVLNFKEAN 714

Query: 59  EEKSFKVIIKAKNASVTKDYVFGELIWSDEKQHQVRSPIVV 99
           E+KS+ V     ++  +    FG + WSD K H V SP+ +
Sbjct: 715 EKKSYTVTFTVDSSKPSGSNSFGSIEWSDGK-HVVGSPVAI 754

Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 8/104 (7%)

Query: 3   NFNYPSITV---PKLSGSITVTRRVKNVG-SPGTYQARVKTPQGVSVTIAPKSLKFINVG 58
           + NYPS  +   P  + +    R + +V     TY+A +  PQG+++++ P  L F  +G
Sbjct: 631 DLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLG 690

Query: 59  EEKSFKVIIKAKNASVTKDYVFGELIWSDEKQHQVRSPIVVKAV 102
           + KSF + ++    S+    V   L+WSD   H VRSPI + ++
Sbjct: 691 DRKSFTLTVR---GSIKGFVVSASLVWSD-GVHYVRSPITITSL 730

Cucumis melo (taxid: 3656)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 2

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
147787383	590	hypothetical protein VITISV_004299 [Viti	0.990	0.171	0.666	6e-33
225447456	769	PREDICTED: subtilisin-like protease [Vit	0.990	0.131	0.666	7e-33
356510927	773	PREDICTED: subtilisin-like protease-like	0.990	0.130	0.676	6e-32
227053577	771	subtilisin-like serine protease [Carica	1.0	0.132	0.647	5e-31
359497363	575	PREDICTED: subtilisin-like protease-like	0.990	0.175	0.647	5e-31
356525207	773	PREDICTED: subtilisin-like protease-like	0.990	0.130	0.656	3e-30
224129258	769	predicted protein [Populus trichocarpa]	0.960	0.127	0.67	4e-30
409032218	773	subtilisin-like protease [Glycine max]	0.990	0.130	0.647	2e-29
225462068	745	PREDICTED: subtilisin-like protease-like	0.980	0.134	0.633	5e-29
296090005	803	unnamed protein product [Vitis vinifera]	0.980	0.124	0.633	5e-29

>gi|147787383|emb|CAN62337.1| hypothetical protein VITISV_004299 [Vitis vinifera]

 Score =  144 bits (364), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 68/102 (66%), Positives = 82/102 (80%), Gaps = 1/102 (0%)

Query: 1   LVNFNYPSITVPKLSGSITVTRRVKNVGSPGTYQARVKTPQGVSVTIAPKSLKFINVGEE 60
           L NFNYPSITVPKL GSITVTR +KNVG PGTY+AR++ P G+SV++ P SLKF  +GEE
Sbjct: 490 LTNFNYPSITVPKLHGSITVTRTLKNVGPPGTYKARIRKPTGISVSVKPDSLKFNKIGEE 549

Query: 61  KSFKVIIKAKNASVTKDYVFGELIWSDEKQHQVRSPIVVKAV 102
           K+F + ++A+ A   +DYVFGELIWSD K H VRSPIVVKA 
Sbjct: 550 KTFSLTLQAERAGAARDYVFGELIWSDAK-HFVRSPIVVKAA 590

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447456|ref|XP_002266728.1| PREDICTED: subtilisin-like protease [Vitis vinifera] gi|296085071|emb|CBI28486.3| unnamed protein product [Vitis vinifera]

 Score =  144 bits (363), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 68/102 (66%), Positives = 82/102 (80%), Gaps = 1/102 (0%)

Query: 1   LVNFNYPSITVPKLSGSITVTRRVKNVGSPGTYQARVKTPQGVSVTIAPKSLKFINVGEE 60
           L NFNYPSITVPKL GSITVTR +KNVG PGTY+AR++ P G+SV++ P SLKF  +GEE
Sbjct: 669 LTNFNYPSITVPKLHGSITVTRTLKNVGPPGTYKARIRKPTGISVSVKPDSLKFNKIGEE 728

Query: 61  KSFKVIIKAKNASVTKDYVFGELIWSDEKQHQVRSPIVVKAV 102
           K+F + ++A+ A   +DYVFGELIWSD K H VRSPIVVKA 
Sbjct: 729 KTFSLTLQAERAGAARDYVFGELIWSDAK-HFVRSPIVVKAA 769

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510927|ref|XP_003524185.1| PREDICTED: subtilisin-like protease-like [Glycine max]

 Score =  141 bits (355), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 69/102 (67%), Positives = 81/102 (79%), Gaps = 1/102 (0%)

Query: 1   LVNFNYPSITVPKLSGSITVTRRVKNVGSPGTYQARVKTPQGVSVTIAPKSLKFINVGEE 60
           L+N NYPSITVPKLSGS+TVTRR+KNVGSPGTY A V+ P G+++++ P  LKF NVGEE
Sbjct: 669 LLNLNYPSITVPKLSGSVTVTRRLKNVGSPGTYIAHVQNPHGITISVKPSILKFKNVGEE 728

Query: 61  KSFKVIIKAKNASVTKDYVFGELIWSDEKQHQVRSPIVVKAV 102
           KSFKV  KA     T +YVFG+LIWSD K H V SPIVVKA+
Sbjct: 729 KSFKVTFKAMQGKATNNYVFGKLIWSDGK-HYVTSPIVVKAL 769

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|227053577|gb|ACP18876.1| subtilisin-like serine protease [Carica papaya]

 Score =  138 bits (347), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 66/102 (64%), Positives = 81/102 (79%)

Query: 1   LVNFNYPSITVPKLSGSITVTRRVKNVGSPGTYQARVKTPQGVSVTIAPKSLKFINVGEE 60
           L +FNYPSITVP+L G IT++R+VKNVGSP TY+  V+ P+G+SVT+ PK LKF   GEE
Sbjct: 670 LADFNYPSITVPELKGLITLSRKVKNVGSPTTYRVTVQKPKGISVTVKPKILKFKKAGEE 729

Query: 61  KSFKVIIKAKNASVTKDYVFGELIWSDEKQHQVRSPIVVKAV 102
           KSF V +K K  + TK+YVFGEL+WSDE +H VRSPIVVKA 
Sbjct: 730 KSFTVTLKMKAKNPTKEYVFGELVWSDEDEHYVRSPIVVKAA 771

Source: Carica papaya

Species: Carica papaya

Genus: Carica

Family: Caricaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497363|ref|XP_002269456.2| PREDICTED: subtilisin-like protease-like, partial [Vitis vinifera]

 Score =  138 bits (347), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 66/102 (64%), Positives = 77/102 (75%), Gaps = 1/102 (0%)

Query: 1   LVNFNYPSITVPKLSGSITVTRRVKNVGSPGTYQARVKTPQGVSVTIAPKSLKFINVGEE 60
           L++FNYPSITVP LSGS+T+TRRVKNVG PG Y A +  P GVSVT+ P  LKF  +GEE
Sbjct: 474 LLDFNYPSITVPNLSGSVTLTRRVKNVGFPGIYAAHISQPTGVSVTVEPSILKFSRIGEE 533

Query: 61  KSFKVIIKAKNASVTKDYVFGELIWSDEKQHQVRSPIVVKAV 102
           K FKV +KA      KDYVFG+LIW+D+K H VRSPIVV A 
Sbjct: 534 KKFKVTLKANTNGEAKDYVFGQLIWTDDK-HHVRSPIVVAAA 574

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525207|ref|XP_003531218.1| PREDICTED: subtilisin-like protease-like [Glycine max] gi|33621210|gb|AAQ23176.1| subtilisin-like protease [Glycine max] gi|409032216|gb|AFV08660.1| subtilisin-like protease [Glycine max]

 Score =  135 bits (340), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 67/102 (65%), Positives = 79/102 (77%), Gaps = 1/102 (0%)

Query: 1   LVNFNYPSITVPKLSGSITVTRRVKNVGSPGTYQARVKTPQGVSVTIAPKSLKFINVGEE 60
           L+N NYPSITVPKLSGS+TVTR +KNVGSPGTY A V+ P G++V++ P  LKF NVGEE
Sbjct: 669 LLNLNYPSITVPKLSGSVTVTRTLKNVGSPGTYIAHVQNPYGITVSVKPSILKFKNVGEE 728

Query: 61  KSFKVIIKAKNASVTKDYVFGELIWSDEKQHQVRSPIVVKAV 102
           KSFK+  KA     T +Y FG+LIWSD K H V SPIVVKA+
Sbjct: 729 KSFKLTFKAMQGKATNNYAFGKLIWSDGK-HYVTSPIVVKAL 769

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129258|ref|XP_002320540.1| predicted protein [Populus trichocarpa] gi|222861313|gb|EEE98855.1| predicted protein [Populus trichocarpa]

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/100 (67%), Positives = 78/100 (78%), Gaps = 2/100 (2%)

Query: 1   LVNFNYPSITVPKLSGSITVTRRVKNVGSPGTYQARVKTPQGVSVTIAPKSLKFINVGEE 60
           L NFNYPSITVPK +GSIT++R VKNVGSP TY+ R++ P GVSV++ PK L+F  VGEE
Sbjct: 670 LANFNYPSITVPKFNGSITLSRTVKNVGSPSTYKLRIRKPTGVSVSVEPKKLEFKKVGEE 729

Query: 61  KSFKVIIKAKNASVTKDYVFGELIWSDEKQHQVRSPIVVK 100
           K+F V +K K     KDYVFGELIWSD K H VRSPIVVK
Sbjct: 730 KAFTVTLKGK-GKAAKDYVFGELIWSDNK-HHVRSPIVVK 767

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|409032218|gb|AFV08661.1| subtilisin-like protease [Glycine max]

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 66/102 (64%), Positives = 78/102 (76%), Gaps = 1/102 (0%)

Query: 1   LVNFNYPSITVPKLSGSITVTRRVKNVGSPGTYQARVKTPQGVSVTIAPKSLKFINVGEE 60
           L+N NYP ITVPKLSGS+TVTR +KNVGSPGTY A V+ P G++V++ P  LKF NVGEE
Sbjct: 669 LLNLNYPLITVPKLSGSVTVTRTLKNVGSPGTYIAHVQNPYGITVSVKPSILKFKNVGEE 728

Query: 61  KSFKVIIKAKNASVTKDYVFGELIWSDEKQHQVRSPIVVKAV 102
           KSFK+  KA     T +Y FG+LIWSD K H V SPIVVKA+
Sbjct: 729 KSFKLTFKAMQGKATNNYAFGKLIWSDGK-HYVTSPIVVKAL 769

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462068|ref|XP_002269877.1| PREDICTED: subtilisin-like protease-like [Vitis vinifera]

 Score =  131 bits (330), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 64/101 (63%), Positives = 75/101 (74%), Gaps = 1/101 (0%)

Query: 1   LVNFNYPSITVPKLSGSITVTRRVKNVGSPGTYQARVKTPQGVSVTIAPKSLKFINVGEE 60
           L  FNYPSIT P LSGS+T++R VKNVG+PGTY A VK P G+SV + P  L+F   GEE
Sbjct: 646 LTGFNYPSITAPNLSGSVTISRTVKNVGTPGTYTASVKAPPGISVAVKPNKLEFREYGEE 705

Query: 61  KSFKVIIKAKNASVTKDYVFGELIWSDEKQHQVRSPIVVKA 101
           KSF++ +KAK   V +DYVFG LIWSD  QH VRS IVVKA
Sbjct: 706 KSFRLTLKAKGRRVAEDYVFGRLIWSD-GQHYVRSSIVVKA 745

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090005|emb|CBI39824.3| unnamed protein product [Vitis vinifera]

 Score =  131 bits (329), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 64/101 (63%), Positives = 75/101 (74%), Gaps = 1/101 (0%)

Query: 1   LVNFNYPSITVPKLSGSITVTRRVKNVGSPGTYQARVKTPQGVSVTIAPKSLKFINVGEE 60
           L  FNYPSIT P LSGS+T++R VKNVG+PGTY A VK P G+SV + P  L+F   GEE
Sbjct: 704 LTGFNYPSITAPNLSGSVTISRTVKNVGTPGTYTASVKAPPGISVAVKPNKLEFREYGEE 763

Query: 61  KSFKVIIKAKNASVTKDYVFGELIWSDEKQHQVRSPIVVKA 101
           KSF++ +KAK   V +DYVFG LIWSD  QH VRS IVVKA
Sbjct: 764 KSFRLTLKAKGRRVAEDYVFGRLIWSD-GQHYVRSSIVVKA 803

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
TAIR|locus:2050215	772	AIR3 "AT2G04160" [Arabidopsis	0.970	0.128	0.613	8.6e-27
TAIR|locus:2168057	778	SBT5.4 "AT5G59810" [Arabidopsi	0.960	0.125	0.55	1.4e-22
UNIPROTKB|Q6H733	799	P0026H03.20-1 "Putative subtil	0.950	0.121	0.540	1e-21
UNIPROTKB|Q8H4X8	762	OJ1136_A10.113 "Putative subti	0.970	0.129	0.5	6.3e-20
UNIPROTKB|Q0JK21	741	Os01g0702300 "Os01g0702300 pro	0.960	0.132	0.481	1.1e-17
UNIPROTKB|Q0J050	769	Os09g0530800 "Os09g0530800 pro	0.970	0.128	0.450	9.8e-16
TAIR|locus:2205303	759	AT1G66210 "AT1G66210" [Arabido	0.970	0.130	0.396	2e-15
TAIR|locus:2171938	791	AT5G45650 "AT5G45650" [Arabido	0.941	0.121	0.457	3.5e-15
TAIR|locus:2198656	769	ATSBT5.2 "AT1G20160" [Arabidop	0.921	0.122	0.455	2.4e-14
TAIR|locus:2126896	749	XSP1 "AT4G00230" [Arabidopsis	0.931	0.126	0.421	8e-14

TAIR|locus:2050215 AIR3 "AT2G04160" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 8.6e-27, P = 8.6e-27
 Identities = 62/101 (61%), Positives = 74/101 (73%)

Query:     1 LVNFNYPSITVPKLSGS-ITVTRRVKNVGSPGTYQARVKTPQGVSVTIAPKSLKFINVGE 59
             LVN NYPSITVP L+ S +TV+R VKNVG P  Y  +V  PQGV V + P SL F  VGE
Sbjct:   672 LVNLNYPSITVPNLTSSKVTVSRTVKNVGRPSMYTVKVNNPQGVYVAVKPTSLNFTKVGE 731

Query:    60 EKSFKVIIKAKNASVTKDYVFGELIWSDEKQHQVRSPIVVK 100
             +K+FKVI+     +V K YVFGEL+WSD+K H+VRSPIVVK
Sbjct:   732 QKTFKVILVKSKGNVAKGYVFGELVWSDKK-HRVRSPIVVK 771

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;ISS;IBA

GO:0005576 "extracellular region" evidence=ISM

GO:0005618 "cell wall" evidence=IBA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0010102 "lateral root morphogenesis" evidence=IEP

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2168057 SBT5.4 "AT5G59810" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 1.4e-22, P = 1.4e-22
 Identities = 55/100 (55%), Positives = 71/100 (71%)

Query:     1 LVNFNYPSITVPKLSGSITVTRRVKNVGSPGTYQARVKTPQGVSVTIAPKSLKFINVGEE 60
             L++FNYPSITVP L+GSITVTR++KNVG P TY AR + P GV V++ PK L F   GE 
Sbjct:   678 LLDFNYPSITVPNLTGSITVTRKLKNVGPPATYNARFREPLGVRVSVEPKQLTFNKTGEV 737

Query:    61 KSFKVIIKAKNASVTKDYVFGELIWSDEKQHQVRSPIVVK 100
             K F++ ++    + +  YVFGEL W+D   H VRSPIVV+
Sbjct:   738 KIFQMTLRPLPVTPS-GYVFGELTWTDS-HHYVRSPIVVQ 775

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IBA

GO:0005618 "cell wall" evidence=IBA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

UNIPROTKB|Q6H733 P0026H03.20-1 "Putative subtilisin-like proteinase AIR3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 264 (98.0 bits), Expect = 1.0e-21, P = 1.0e-21
 Identities = 53/98 (54%), Positives = 70/98 (71%)

Query:     3 NFNYPSITVPKLSGSITVTRRVKNVGSPGTYQARVKTPQGVSVTIAPKSLKFINVGEEKS 62
             + NYPSITV  L+ S TV R VKNVG PG Y+A V +P GV VT++P +L F+  GE+K+
Sbjct:   696 DLNYPSITVVNLTSSATVRRTVKNVGKPGVYKAYVTSPAGVRVTVSPDTLPFLLKGEKKT 755

Query:    63 FKVIIKAKNASVTKDYVFGELIWSDEKQHQVRSPIVVK 100
             F+V  +  NAS+  DY FG L+W++ KQ  VRSP+VVK
Sbjct:   756 FQVRFEVTNASLAMDYSFGALVWTNGKQF-VRSPLVVK 792

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

GO:0005618 "cell wall" evidence=ISS

UNIPROTKB|Q8H4X8 OJ1136_A10.113 "Putative subtilisin-like serine protease AIR3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 247 (92.0 bits), Expect = 6.3e-20, P = 6.3e-20
 Identities = 50/100 (50%), Positives = 66/100 (66%)

Query:     3 NFNYPSITVPKLSGSITVTRRVKNVGSPGTYQARVKTPQGVSVTIAPKSLKFINVGEEKS 62
             + NYPSI VP L  + TV RR+K VG P TY+A  + P GV++T+ P +L+F   GE K 
Sbjct:   663 DLNYPSIVVPALRHTSTVARRLKCVGRPATYRATWRAPYGVNMTVEPAALEFGKDGEVKE 722

Query:    63 FKVIIKAKNASVTKDYVFGELIWSDEKQHQVRSPIVVKAV 102
             FKV  K++   + K YVFG L+WSD   H VRSP+VV A+
Sbjct:   723 FKVTFKSEKDKLGKGYVFGRLVWSDGTHH-VRSPVVVNAL 761

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

GO:0005618 "cell wall" evidence=ISS

UNIPROTKB|Q0JK21 Os01g0702300 "Os01g0702300 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 226 (84.6 bits), Expect = 1.1e-17, P = 1.1e-17
 Identities = 51/106 (48%), Positives = 68/106 (64%)

Query:     3 NFNYPSITVPKLSGSITVTRRVKNVGS-PGTYQARV-KTPQGVSVTIAPKSLKFINVGEE 60
             + NYPSI VP LSGS TV RRVKNVG+ P  Y   V +   GV VT+ P  L F + GEE
Sbjct:   632 DLNYPSIAVPCLSGSATVRRRVKNVGAAPCRYAVSVTEALAGVKVTVYPPELSFESYGEE 691

Query:    61 KSFKVIIKAKNASVTKDYVFGELIWSDE------KQHQVRSPIVVK 100
             + F V ++ ++A+   +YVFG + WS+E      ++H+VRSPIV K
Sbjct:   692 REFTVRLEVQDAAAAANYVFGSIEWSEESESDPDRKHRVRSPIVAK 737

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

GO:0005618 "cell wall" evidence=ISS

UNIPROTKB|Q0J050 Os09g0530800 "Os09g0530800 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 208 (78.3 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 46/102 (45%), Positives = 61/102 (59%)

Query:     2 VNFNYPSITVPKLSGSITVTRRVKNVGSP-GTYQARVKTPQGVSVTIAPKSLKFINVGEE 60
             +N N PSIT+P+L G +TV+R V NVG     Y+ARV+ P GV VT++P  L F +   +
Sbjct:   662 LNLNVPSITIPELRGKLTVSRTVTNVGPALSKYRARVEAPPGVDVTVSPSLLTFNSTVRK 721

Query:    61 KSFKVIIKAKNASVTKDYVFGELIWSDEKQHQVRSPIVVKAV 102
               FKV  +AK   V   Y FG L W D   H VR P+VV+ +
Sbjct:   722 LPFKVTFQAK-LKVKGRYTFGSLTWEDGT-HTVRIPLVVRII 761

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

GO:0005618 "cell wall" evidence=ISS

TAIR|locus:2205303 AT1G66210 "AT1G66210" [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 40/101 (39%), Positives = 68/101 (67%)

Query:     1 LVNFNYPSITVPKLSGSITVTRRVKNVGSPGT-YQARVKTPQGVSVTIAPKSLKFINVGE 59
             +++ N PSIT+P LS  IT+TR V NVG  G+ Y+A ++ PQG+++ ++P++L+F +   
Sbjct:   652 MLDVNMPSITIPYLSEEITITRTVTNVGPVGSVYKAVIQAPQGINLQVSPETLEFGSNTN 711

Query:    60 EKSFKVIIKAKNASVTKDYVFGELIWSDEKQHQVRSPIVVK 100
             + +F V +   + + T DY+FG L W+D + H VR P+ V+
Sbjct:   712 KTTFTVKVSTTHRANT-DYLFGSLTWADNEGHNVRIPLSVR 751

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IBA

GO:0005576 "extracellular region" evidence=ISM

GO:0005618 "cell wall" evidence=IBA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2171938 AT5G45650 "AT5G45650" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 3.5e-15, P = 3.5e-15
 Identities = 48/105 (45%), Positives = 59/105 (56%)

Query:     3 NFNYPSITVPKLSGSITVTRRVKNVG---SPGTYQARVKTPQGVSVTIAPKSLKFINVGE 59
             N NYPSI VP L  ++TV R V NVG   S  TY   VK P G+SV   P  L F  +G+
Sbjct:   685 NHNYPSIAVPNLKKTVTVKRTVTNVGTGNSTSTYLFSVKPPSGISVKAIPNILSFNRIGQ 744

Query:    60 EKSFKVIIK-----AKNASVTKDYVFGELIWSDEKQHQVRSPIVV 99
             ++ FK++IK       NA+    Y FG   W+D K H VRSPI V
Sbjct:   745 KQRFKIVIKPLKNQVMNATEKGQYQFGWFSWTD-KVHVVRSPIAV 788

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IBA

GO:0005576 "extracellular region" evidence=ISM

GO:0005618 "cell wall" evidence=IBA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

TAIR|locus:2198656 ATSBT5.2 "AT1G20160" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 2.4e-14, P = 2.4e-14
 Identities = 46/101 (45%), Positives = 66/101 (65%)

Query:     5 NYPSITVP--KLSGSITVTRRVKNVGSPG--TYQARVKTPQGVSVTIAPKSLKFINVGEE 60
             NYPSI +   K +GS TVTR V NVG  G   Y   V+TP G ++ + P+ L+F   GE+
Sbjct:   666 NYPSIGISGFKGNGSKTVTRTVTNVGEDGEAVYTVSVETPPGFNIQVTPEKLQFTKDGEK 725

Query:    61 KSFKVIIKAKNASVTKDYVFGELIWSDEKQHQVRSPIVVKA 101
              +++VI+ A  AS+ +D VFG L WS+ K ++VRSPIV+ +
Sbjct:   726 LTYQVIVSA-TASLKQD-VFGALTWSNAK-YKVRSPIVISS 763

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IBA

GO:0005576 "extracellular region" evidence=ISM

GO:0005618 "cell wall" evidence=IBA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

GO:0048046 "apoplast" evidence=IDA

TAIR|locus:2126896 XSP1 "AT4G00230" [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 8.0e-14, P = 8.0e-14
 Identities = 43/102 (42%), Positives = 61/102 (59%)

Query:     3 NFNYPSITVP----KLSGSITVTRRVKNVGSPGT-YQARVKTPQGVSVTIAPKSLKFINV 57
             + NYP+I +     K S      RRV NVG P + Y A V+ P+GV +T+ P+SL F   
Sbjct:   644 SLNYPTIQLTLRSAKTSTLAVFRRRVTNVGPPSSVYTATVRAPKGVEITVEPQSLSFSKA 703

Query:    58 GEEKSFKVIIKAKNASVTKDYVFGELIWSDEKQHQVRSPIVV 99
              +++SFKV++KAK  +  K  V G L+W   + H VRSPIV+
Sbjct:   704 SQKRSFKVVVKAKQMTPGK-IVSGLLVWKSPR-HSVRSPIVI 743

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IBA

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

GO:0005618 "cell wall" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	102
PF06280	112	DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0	97.51
PF10633	78	NPCBM_assoc: NPCBM-associated, NEW3 domain of alph	96.2
PF11614	118	FixG_C: IG-like fold at C-terminal of FixG, putati	90.89
COG1470	513	Predicted membrane protein [Function unknown]	88.84
smart00635	81	BID_2 Bacterial Ig-like domain 2.	87.34
PF00345	122	PapD_N: Pili and flagellar-assembly chaperone, Pap	85.75
PF14874	102	PapD-like: Flagellar-associated PapD-like	82.12

>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.51  E-value=0.0021  Score=42.31  Aligned_cols=87  Identities=17%  Similarity=0.335  Sum_probs=56.2

Q ss_pred             EEecCCCeEEEEEEEEEccC-CceEEEEEeC--------CCce-----------EEEEEcCeEEEeecCcEEEEEEEEEE
Q 048256           10 TVPKLSGSITVTRRVKNVGS-PGTYQARVKT--------PQGV-----------SVTIAPKSLKFINVGEEKSFKVIIKA   69 (102)
Q Consensus        10 ~v~~~~~~~t~~RTVTNVg~-~stY~a~v~~--------p~gv-----------~V~V~P~~l~f~~~~~~~~f~Vt~~~   69 (102)
                      ++.......+++=+++|.|+ .-+|+.....        ..|.           .+...|..++. ++||++.++|+|+.
T Consensus         2 ~L~d~~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~~   80 (112)
T PF06280_consen    2 SLKDTGNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTITP   80 (112)
T ss_dssp             EEEEE-SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE-
T ss_pred             CccccCCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEEe
Confidence            44444456778888999998 8888876541        1221           56677888888 58999999999998


Q ss_pred             eecc--CCCCeEEEEEEEecCCCC-EEECeE
Q 048256           70 KNAS--VTKDYVFGELIWSDEKQH-QVRSPI   97 (102)
Q Consensus        70 ~~~~--~~~~~~fG~l~W~~~~gh-~VrsPi   97 (102)
                      ....  ....+..|.|..++..++ .++.|.
T Consensus        81 p~~~~~~~~~~~eG~I~~~~~~~~~~lsIPy  111 (112)
T PF06280_consen   81 PSGLDASNGPFYEGFITFKSSDGEPDLSIPY  111 (112)
T ss_dssp             -GGGHHTT-EEEEEEEEEESSTTSEEEEEEE
T ss_pred             hhcCCcccCCEEEEEEEEEcCCCCEEEEeee
Confidence            4212  346789999999987766 788885

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.

>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known

Probab=96.20  E-value=0.035  Score=34.23  Aligned_cols=55  Identities=25%  Similarity=0.431  Sum_probs=36.3

Q ss_pred             CeEEEEEEEEEccC-C-ceEEEEEeCCCceEEEEEcCeEEEeecCcEEEEEEEEEEe
Q 048256           16 GSITVTRRVKNVGS-P-GTYQARVKTPQGVSVTIAPKSLKFINVGEEKSFKVIIKAK   70 (102)
Q Consensus        16 ~~~t~~RTVTNVg~-~-stY~a~v~~p~gv~V~V~P~~l~f~~~~~~~~f~Vt~~~~   70 (102)
                      ...+++=+|+|-|. . ...+.++..|.|-.+...|..+.--+.||.++++++++..
T Consensus         5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp   61 (78)
T PF10633_consen    5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVP   61 (78)
T ss_dssp             EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-
T ss_pred             CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECC
Confidence            35778889999997 4 5688899999999988999988755789999999999985

It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.

>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A

Probab=90.89  E-value=1.7  Score=28.49  Aligned_cols=51  Identities=22%  Similarity=0.335  Sum_probs=36.0

Q ss_pred             EEEEEEEEccC-CceEEEEEeCCCceEEEEEcCeEEEeecCcEEEEEEEEEEe
Q 048256           19 TVTRRVKNVGS-PGTYQARVKTPQGVSVTIAPKSLKFINVGEEKSFKVIIKAK   70 (102)
Q Consensus        19 t~~RTVTNVg~-~stY~a~v~~p~gv~V~V~P~~l~f~~~~~~~~f~Vt~~~~   70 (102)
                      .++=.++|.+. +-.|+.++..++|+++......+.. ++|+...+.+.+...
T Consensus        34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p   85 (118)
T PF11614_consen   34 QYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAP   85 (118)
T ss_dssp             EEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-
T ss_pred             EEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEEC
Confidence            46667899999 9999999999999998654478888 689999999999886

>COG1470 Predicted membrane protein [Function unknown]

Probab=88.84  E-value=2.6  Score=35.12  Aligned_cols=62  Identities=21%  Similarity=0.366  Sum_probs=50.3

Q ss_pred             eEEEEEEEEEccC--CceEEEEEeCCCceEEEEEcCeEEEeecCcEEEEEEEEEEeeccCCCCe
Q 048256           17 SITVTRRVKNVGS--PGTYQARVKTPQGVSVTIAPKSLKFINVGEEKSFKVIIKAKNASVTKDY   78 (102)
Q Consensus        17 ~~t~~RTVTNVg~--~stY~a~v~~p~gv~V~V~P~~l~f~~~~~~~~f~Vt~~~~~~~~~~~~   78 (102)
                      ..++.=-+.|-|.  -..-+.++..|+|-++.|.|.++---++|+..+..+++++...+..++|
T Consensus       398 e~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY  461 (513)
T COG1470         398 EKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDY  461 (513)
T ss_pred             cceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcE
Confidence            4566667899997  3677899999999999999999887789999999999998643444554

>smart00635 BID_2 Bacterial Ig-like domain 2

Probab=87.34  E-value=3.6  Score=25.30  Aligned_cols=40  Identities=20%  Similarity=0.411  Sum_probs=30.1

Q ss_pred             EEEEEcCeEEEeecCcEEEEEEEEEEeeccCCCCeEEEEEEEecCC
Q 048256           44 SVTIAPKSLKFINVGEEKSFKVIIKAKNASVTKDYVFGELIWSDEK   89 (102)
Q Consensus        44 ~V~V~P~~l~f~~~~~~~~f~Vt~~~~~~~~~~~~~fG~l~W~~~~   89 (102)
                      .|++.|..+.+. .|+++.|++++... .  ...  -+.+.|+...
T Consensus         4 ~i~i~p~~~~l~-~G~~~~l~a~~~~~-~--~~~--~~~v~w~Ssn   43 (81)
T smart00635        4 SVTVTPTTASVK-KGLTLQLTATVTPS-S--AKV--TGKVTWTSSN   43 (81)
T ss_pred             EEEEeCCeeEEe-CCCeEEEEEEEECC-C--CCc--cceEEEEECC
Confidence            578999999995 89999999997653 1  122  5778897654

>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors

Probab=85.75  E-value=5.6  Score=26.01  Aligned_cols=51  Identities=18%  Similarity=0.275  Sum_probs=38.3

Q ss_pred             eEEEEEEEEEccC-CceEEEEEeC---CCc----eEEEEEcCeEEEeecCcEEEEEEEEEE
Q 048256           17 SITVTRRVKNVGS-PGTYQARVKT---PQG----VSVTIAPKSLKFINVGEEKSFKVIIKA   69 (102)
Q Consensus        17 ~~t~~RTVTNVg~-~stY~a~v~~---p~g----v~V~V~P~~l~f~~~~~~~~f~Vt~~~   69 (102)
                      ..+..=+|+|-|+ +..+.+.+.-   ..+    -.+.|+|..+.+ +.|+++.+.| +..
T Consensus        15 ~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~   73 (122)
T PF00345_consen   15 QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRG   73 (122)
T ss_dssp             SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EEC
T ss_pred             CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-Eec
Confidence            3455678999998 7777777763   111    157799999999 5899999999 663

Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....

>PF14874 PapD-like: Flagellar-associated PapD-like

Probab=82.12  E-value=10  Score=23.81  Aligned_cols=79  Identities=19%  Similarity=0.269  Sum_probs=52.8

Q ss_pred             eEEEEEEEEEccC-CceEEEEEeCCCceEEEEEcCeEEEeecCcEEEEEEEEEEeeccCCCCeEEEEEEEecCCCCEEEC
Q 048256           17 SITVTRRVKNVGS-PGTYQARVKTPQGVSVTIAPKSLKFINVGEEKSFKVIIKAKNASVTKDYVFGELIWSDEKQHQVRS   95 (102)
Q Consensus        17 ~~t~~RTVTNVg~-~stY~a~v~~p~gv~V~V~P~~l~f~~~~~~~~f~Vt~~~~~~~~~~~~~fG~l~W~~~~gh~Vrs   95 (102)
                      ..+.+=+++|.|. ...|+.......+-.++++|..=.. ..|++..++|+|.+.  ...+. .-+.|.-.... ..+..
T Consensus        21 ~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~--~~~g~-~~~~l~i~~e~-~~~~i   95 (102)
T PF14874_consen   21 TYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPT--KPLGD-YEGSLVITTEG-GSFEI   95 (102)
T ss_pred             EEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeC--CCCce-EEEEEEEEECC-eEEEE
Confidence            3444456799999 9999987644234456778876555 689999999999964  22333 34777655444 56666


Q ss_pred             eEEEE
Q 048256           96 PIVVK  100 (102)
Q Consensus        96 Piav~  100 (102)
                      |+-+.
T Consensus        96 ~v~a~  100 (102)
T PF14874_consen   96 PVKAE  100 (102)
T ss_pred             EEEEE
Confidence            66543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	102
3vta_A	621	Crystal Structure Of Cucumisin, A Subtilisin-Like E		6e-08
3i6s_A	649	Crystal Structure Of The Plant Subtilisin-Like Prot		5e-07

>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like Endoprotease From Cucumis Melo L Length = 621

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 8/104 (7%)
Query: 3   NFNYPSITV---PKLSGSITVTRRVKNVG-SPGTYQARVKTPQGVSVTIAPKSLKFINVG 58
           + NYPS  +   P  + +    R + +V     TY+A +  PQG+++++ P  L F  +G
Sbjct: 521 DLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLG 580
Query: 59  EEKSFKVIIKAKNASVTKDYVFGELIWSDEKQHQVRSPIVVKAV 102
           + KSF + ++    S+    V   L+WSD   H VRSPI + ++
Sbjct: 581 DRKSFTLTVR---GSIKGFVVSASLVWSD-GVHYVRSPITITSL 620

>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3 Length = 649

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 9/109 (8%)
Query: 2   VNFNYPS-ITVPKLSGSITVT-----RRVKNVG-SPGTYQARVKTPQGVSVTIAPKSLKF 54
            + NYPS I +  + G+ T+      R V NVG    TY+A++K P+  +++++P+ L F
Sbjct: 538 ADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVF 597
Query: 55  INVGEEKSFKVIIKAKNASVTKDYVFGELIWSDEK-QHQVRSPIVVKAV 102
            N  E++S+ + I+          V G + W ++   H VRSPIV   +
Sbjct: 598 KNKNEKQSYTLTIRYIGDEGQSRNV-GSITWVEQNGNHSVRSPIVTSPI 645

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	102
3vta_A	621	Cucumisin; subtilisin-like fold, serine protease,	1e-34
3i6s_A	649	Subtilisin-like protease; PA-domain, FN3-domain, h	8e-31
3abz_A	845	Beta-glucosidase I; glycoside hydrolase family3 be	3e-04

>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621

 Score =  123 bits (310), Expect = 1e-34
 Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 8/104 (7%)

Query: 3   NFNYPSITV---PKLSGSITVTRRVKNVGSP-GTYQARVKTPQGVSVTIAPKSLKFINVG 58
           + NYPS  +   P  + +    R + +V     TY+A +  PQG+++++ P  L F  +G
Sbjct: 521 DLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLG 580

Query: 59  EEKSFKVIIKAKNASVTKDYVFGELIWSDEKQHQVRSPIVVKAV 102
           + KSF + ++     +    V   L+WSD   H VRSPI + ++
Sbjct: 581 DRKSFTLTVRGS---IKGFVVSASLVWSDGV-HYVRSPITITSL 620

>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649

 Score =  112 bits (282), Expect = 8e-31
 Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 9/108 (8%)

Query: 3   NFNYPS-ITVPKLSGSI-----TVTRRVKNVGSP-GTYQARVKTPQGVSVTIAPKSLKFI 55
           + NYPS I +  + G+         R V NVG    TY+A++K P+  +++++P+ L F 
Sbjct: 539 DLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFK 598

Query: 56  NVGEEKSFKVIIKAKNASVTKDYVFGELIWSDE-KQHQVRSPIVVKAV 102
           N  E++S+ + I+       +    G + W ++   H VRSPIV   +
Sbjct: 599 NKNEKQSYTLTIRYI-GDEGQSRNVGSITWVEQNGNHSVRSPIVTSPI 645

>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A* Length = 845

 Score = 37.2 bits (86), Expect = 3e-04
 Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 10/79 (12%)

Query: 3   NFNYPSITVPKLSGSITVTRRVKNVGS--PG--TYQARVKTPQGVSVTIAPKSLK----- 53
            F             I ++  VKN G    G    Q          V+   K LK     
Sbjct: 722 TFELDISDFKVTDDKIAISVDVKNTGDKFAGSEVVQVYFSALNS-KVSRPVKELKGFEKV 780

Query: 54  FINVGEEKSFKVIIKAKNA 72
            +  GE+K+  + ++ K+A
Sbjct: 781 HLEPGEKKTVNIDLELKDA 799

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	102
3i6s_A	649	Subtilisin-like protease; PA-domain, FN3-domain, h	100.0
3vta_A	621	Cucumisin; subtilisin-like fold, serine protease,	99.97
1xf1_A	926	C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St	99.44
2ys4_A	122	Hydrocephalus-inducing protein homolog; hydin, PAP	94.14
2e6j_A	112	Hydin protein; PAPD, structural genomics, NPPSFA,	81.93

>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*

Probab=100.00  E-value=6.3e-33  Score=228.54  Aligned_cols=100  Identities=31%  Similarity=0.610  Sum_probs=88.0

Q ss_pred             CCCCCcceEEEec-CCCe-----EEEEEEEEEccC-CceEEEEEeCCCceEEEEEcCeEEEeecCcEEEEEEEEEEeecc
Q 048256            1 LVNFNYPSITVPK-LSGS-----ITVTRRVKNVGS-PGTYQARVKTPQGVSVTIAPKSLKFINVGEEKSFKVIIKAKNAS   73 (102)
Q Consensus         1 ~~dLNyPSi~v~~-~~~~-----~t~~RTVTNVg~-~stY~a~v~~p~gv~V~V~P~~l~f~~~~~~~~f~Vt~~~~~~~   73 (102)
                      +.|||||||+++. +.+.     ++|+|||||||+ +++|+|+|++|+|++|+|+|++|+|++.+||++|+|+|+.. ..
T Consensus       537 ~~~lNyPs~~~~~~~~~~~~~~~~~~~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~~-~~  615 (649)
T 3i6s_A          537 SADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYI-GD  615 (649)
T ss_dssp             CCCCCCSSEEEEECCSSCCCCEEEEEEEEEEECC--CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEEEEEEEEC-CC
T ss_pred             hhhcCCCcEEeecccCCCCccceEEEEEEEEEeCCCCcEEEEEEecCCCCEEEEECCEEEEecCCCEEEEEEEEEec-cc
Confidence            4699999999997 6666     899999999999 99999999999999999999999999999999999999986 34


Q ss_pred             CCCCeEEEEEEEec--CCCCEEECeEEEEEC
Q 048256           74 VTKDYVFGELIWSD--EKQHQVRSPIVVKAV  102 (102)
Q Consensus        74 ~~~~~~fG~l~W~~--~~gh~VrsPiav~~~  102 (102)
                      ..+.|.||+|+|+|  |+ |.|||||+|++.
T Consensus       616 ~~~~~~fg~l~w~~~~~~-h~vrsPi~v~~~  645 (649)
T 3i6s_A          616 EGQSRNVGSITWVEQNGN-HSVRSPIVTSPI  645 (649)
T ss_dssp             ---CCCEEEEEEEETTSC-CEEEEEEEEEEC
T ss_pred             CCCceEEEEEEEEcCCCC-eEEEEeEEEEEc
Confidence            45678999999999  88 999999999874

>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}

Probab=99.97  E-value=1.4e-30  Score=212.85  Aligned_cols=97  Identities=31%  Similarity=0.610  Sum_probs=89.2

Q ss_pred             CCCCcceEEEe---cCCCeEEEEEEEEEccC-CceEEEEEeCCCceEEEEEcCeEEEeecCcEEEEEEEEEEeeccCCCC
Q 048256            2 VNFNYPSITVP---KLSGSITVTRRVKNVGS-PGTYQARVKTPQGVSVTIAPKSLKFINVGEEKSFKVIIKAKNASVTKD   77 (102)
Q Consensus         2 ~dLNyPSi~v~---~~~~~~t~~RTVTNVg~-~stY~a~v~~p~gv~V~V~P~~l~f~~~~~~~~f~Vt~~~~~~~~~~~   77 (102)
                      .|||||||++.   .+..+++|+|||||||+ +++|++++++|+|++|+|+|++|+|++.+||++|+|+|+..   ..+.
T Consensus       520 ~~lN~pS~~v~~~~~~~~~~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~~---~~~~  596 (621)
T 3vta_A          520 WDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGS---IKGF  596 (621)
T ss_dssp             GGSCCSSEEEECCSSCCEEEEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEEC---CCSS
T ss_pred             cccccccEEEEccCCCceEEEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEEec---CCCc
Confidence            58999999996   44568999999999999 99999999999999999999999999999999999999864   4578


Q ss_pred             eEEEEEEEecCCCCEEECeEEEEEC
Q 048256           78 YVFGELIWSDEKQHQVRSPIVVKAV  102 (102)
Q Consensus        78 ~~fG~l~W~~~~gh~VrsPiav~~~  102 (102)
                      +.||+|+|+||+ |.|||||+|+.+
T Consensus       597 ~~~g~l~w~d~~-h~Vr~Pi~v~~~  620 (621)
T 3vta_A          597 VVSASLVWSDGV-HYVRSPITITSL  620 (621)
T ss_dssp             EEEEEEEEECSS-CCCEEEEEEECC
T ss_pred             eEEEEEEEEcCC-EEEEeCEEEEEe
Confidence            999999999999 999999999864

>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*

Probab=99.44  E-value=8e-13  Score=112.28  Aligned_cols=93  Identities=25%  Similarity=0.288  Sum_probs=76.3

Q ss_pred             ceEEEecCCCeEEEEEEEEEccC-C--ceEEEEEeC--CCceEEEEEcCeEEEeec-------CcEEEEEEEEEEee---
Q 048256            7 PSITVPKLSGSITVTRRVKNVGS-P--GTYQARVKT--PQGVSVTIAPKSLKFINV-------GEEKSFKVIIKAKN---   71 (102)
Q Consensus         7 PSi~v~~~~~~~t~~RTVTNVg~-~--stY~a~v~~--p~gv~V~V~P~~l~f~~~-------~~~~~f~Vt~~~~~---   71 (102)
                      ++|.+..+....+++|||||+|+ .  .+|++.+..  |.|..++|+|..|.|...       ||+++|+|+|+...   
T Consensus       490 ~~i~l~~~~~~~~~~~tv~N~g~~~~~~~y~~~v~~~~~~~~~~~v~p~~l~~~~~~~vtv~ag~~~~~~vt~~~~~~~~  569 (926)
T 1xf1_A          490 SKVHLNNVSDKFEVTVNVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVLYETSWQKITIPANSSKQVTVPIDASRFSK  569 (926)
T ss_dssp             SCEEEEEECSEEEEEEEEEECSSSCEEEEEEEEEEEEEEETTEEEEEEEEEEECCCEEEEECTTEEEEEEEEEECHHHHH
T ss_pred             ceeeccccCccEEEEEEEEEeCCCceeEEEEEEEEeccCCCceEEeccceeEeccCCeEEECCCCEEEEEEEEEcCccch
Confidence            36777777778899999999997 4  578888875  779999999999999877       99999999999741   


Q ss_pred             ----ccCCCCeEEEEEEEe--cCCCCE-EECeEEEE
Q 048256           72 ----ASVTKDYVFGELIWS--DEKQHQ-VRSPIVVK  100 (102)
Q Consensus        72 ----~~~~~~~~fG~l~W~--~~~gh~-VrsPiav~  100 (102)
                          ..+.+.+.||.|.|+  +++ |. ||+|+++.
T Consensus       570 ~~~~~~~~~~~~~G~i~~~~~~~~-~~~v~~P~~~~  604 (926)
T 1xf1_A          570 DLLAQMKNGYFLEGFVRFKQDPTK-EELMSIPYIGF  604 (926)
T ss_dssp             HHHHHSTTCEEEEEEEEEESSTTS-CCCEEEEEEEE
T ss_pred             hhcccccCCcEEEEEEEEEeCCCC-CCEEEeeeEEE
Confidence                123456899999999  566 65 99999985

>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.14  E-value=0.2  Score=32.16  Aligned_cols=50  Identities=24%  Similarity=0.380  Sum_probs=40.2

Q ss_pred             CeEEEEEEEEEccC-CceEEEEEeCCCceEEEEEcCeEEEeecCcEEEEEEEEEEe
Q 048256           16 GSITVTRRVKNVGS-PGTYQARVKTPQGVSVTIAPKSLKFINVGEEKSFKVIIKAK   70 (102)
Q Consensus        16 ~~~t~~RTVTNVg~-~stY~a~v~~p~gv~V~V~P~~l~f~~~~~~~~f~Vt~~~~   70 (102)
                      ...+.+=.++|+|+ +..|+.....|    .+|+|+.-.. +.||...++|+|.+.
T Consensus        41 ~~~~~~~~l~N~g~~~~~f~~~~~~~----F~i~P~~g~L-~pg~~~~i~V~F~P~   91 (122)
T 2ys4_A           41 YSTQKILLVRNIGNKNAVFHIKTCRP----FSIEPAIGTL-NVGESMQLEVEFEPQ   91 (122)
T ss_dssp             SCEEEEEEEECCSSSCEEEEEECCTT----EEEESSEEEE-CTTCEEEEEEEECCS
T ss_pred             CeEEEEEEEEECCCCCEEEEEecCCC----eEEECCcCEE-CCCCEEEEEEEEEcC
Confidence            35566667899999 88887765443    5579999998 589999999999986

>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.93  E-value=4.6  Score=24.72  Aligned_cols=53  Identities=13%  Similarity=0.158  Sum_probs=38.9

Q ss_pred             eEEEEEEEEEccC-CceEEEEEeC-CCceEEEEEcCeEEEeecCcEEEEEEEEEEe
Q 048256           17 SITVTRRVKNVGS-PGTYQARVKT-PQGVSVTIAPKSLKFINVGEEKSFKVIIKAK   70 (102)
Q Consensus        17 ~~t~~RTVTNVg~-~stY~a~v~~-p~gv~V~V~P~~l~f~~~~~~~~f~Vt~~~~   70 (102)
                      ..+..=+++|.|+ +..|+..... +.+-..+++|+.=.. ..|+++.++|+|.+.
T Consensus        27 ~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i-~pg~~~~i~V~f~~~   81 (112)
T 2e6j_A           27 AHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGII-EPSGVQAIQISFSSI   81 (112)
T ss_dssp             CEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEE-CTTBCCEEEEEECCC
T ss_pred             EEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEE-CCCCEEEEEEEEECC
Confidence            4455556899999 9999883211 123336679999888 589999999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	102
d1w8oa1	103	Sialidase, "linker" domain {Micromonospora viridif	96.21
d1vqoe1	79	Ribosomal protein L6 {Archaeon Haloarcula marismor	80.91

>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Sialidase, "linker" domain
species: Micromonospora viridifaciens [TaxId: 1881]

Probab=96.21  E-value=0.028  Score=34.48  Aligned_cols=81  Identities=14%  Similarity=0.152  Sum_probs=55.8

Q ss_pred             CCcceEEEecCCCeEEEEEEEEEccC-C-ceEEEEEeCCCceEEEEEcCeEEEeecCcEEEEEEEEEEeeccCCCCeEEE
Q 048256            4 FNYPSITVPKLSGSITVTRRVKNVGS-P-GTYQARVKTPQGVSVTIAPKSLKFINVGEEKSFKVIIKAKNASVTKDYVFG   81 (102)
Q Consensus         4 LNyPSi~v~~~~~~~t~~RTVTNVg~-~-stY~a~v~~p~gv~V~V~P~~l~f~~~~~~~~f~Vt~~~~~~~~~~~~~fG   81 (102)
                      |.-|++++. -+...+++=+|+|-|. . ..-+..+..|+|=.++  |....+ +.||+++++++++.......+.|.. 
T Consensus         6 ~t~p~~~v~-pG~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v~--~~~~~L-~pG~s~~~~~~Vt~p~~a~~G~Y~i-   80 (103)
T d1w8oa1           6 FTIPDVALE-PGQQVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQ--GSVEPL-MPGRQAKGQVTITVPAGTTPGRYRV-   80 (103)
T ss_dssp             EECCCEEEC-TTCEEEEEEEEECCSSSCBSSCEEEEECCTTSEEE--EEECCB-CTTCEEEEEEEEECCTTCCCEEEEE-
T ss_pred             ccCcceeeC-CCCeEEEEEEEEeCCCCceeeeeEEEcCCCCcccc--Ccceee-CCCCcEEEEEEEECCCCCCCceEEE-
Confidence            445776663 2457889999999998 4 3456778899998875  444455 5899999999999853334455554 


Q ss_pred             EEEEecCC
Q 048256           82 ELIWSDEK   89 (102)
Q Consensus        82 ~l~W~~~~   89 (102)
                      .+..+++.
T Consensus        81 ~~~a~~~~   88 (103)
T d1w8oa1          81 GATLRTSA   88 (103)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEeCC
Confidence            34445444

>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=80.91  E-value=2.3  Score=24.10  Aligned_cols=32  Identities=6%  Similarity=0.122  Sum_probs=25.9

Q ss_pred             EEEEeCCCceEEEEEcCeEEEeecCcEEEEEE
Q 048256           34 QARVKTPQGVSVTIAPKSLKFINVGEEKSFKV   65 (102)
Q Consensus        34 ~a~v~~p~gv~V~V~P~~l~f~~~~~~~~f~V   65 (102)
                      +..+..|+|++|++.-..+.++....++++.+
T Consensus         2 k~~I~IP~~V~v~i~~~~i~vkGp~G~L~~~~   33 (79)
T d1vqoe1           2 RVELEIPEDVDAEQDHLDITVEGDNGSVTRRL   33 (79)
T ss_dssp             EEEEECCSSCEEEEETTEEEEEETTEEEEEEC
T ss_pred             CceeECCCCcEEEEeCCEEEEEcCCeEEEEEc
Confidence            34688999999999999999987776665543