Citrus Sinensis ID: 048319

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
Protein Sequence
MAALLWADCLAQFVMWTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVPVAAIIPISYIKPWNLRFGVSAICTVIATLLFLSGTCTYENKEPEGSPLTSVFRVFVASTTKLFYRLPSDASELYEGNDTDDSFSDSDDSSFVQPTCGLGCLEKAAVILPNGTIEQQETNRWRLCSVTEVEETKRLLRMIPICLTFIIPGVVSSIGNTYFVEQADLLNKKVGNLKATTVILLPYYNN
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHccccEEcccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccEEcccEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHHHHHccccccccHHHHHccccccccHcccccccEccccccHEHHccEEEEEcccccccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEccc
Coil and Loop (DISEMBL)
MAALLWADCLAQFVMWTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIglltmstppvlagfvgtcseykpecivkgHKILFYAALGLLAFAssscsvestEFAEEQLEIAINEHISLSLIQREFFKLLLFMVPvaaiipisyikpwnlrfgVSAICTVIATLLFLsgtctyenkepegspltSVFRVFVASTTKlfyrlpsdaselyegndtddsfsdsddssfvqptcglgclekaavilpngtieqqetnrwrlcsVTEVEETKRLLRMIPICLTFIIPgvvssignTYFVEQADLLNKKVGNLKATTVILLPYYNN
Flexible Loop (DISEMBL)
MAALLWADCLAQFVMWTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVPVAAIIPISYIKPWNLRFGVSAICTVIATLLFLSGTCTYENkepegspltsVFRVFVASTTKLFYRLPSDASELYEGNDTDDSFSDSDDSSFVQPTCGLGCLEKAAVILPngtieqqetnrwrlcSVTEVEETKRLLRMIPICLTFIIPGVVSSIGNTYFVEQADLLnkkvgnlkattvillpyynn
Low Complexity Region (SEG)
MAALLWADCLAQFVMWTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECIVKGHKIlfyaalgllafassscsVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVPVAAIIPISYIKPWNLRFGVSAICTVIATLLFLSGTCTYENKEPEGSPLTSVFRVFVASTTKLFYRLPSDASELYEGNDTddsfsdsddssfVQPTCGLGCLEKAAVILPNGTIEQQETNRWRLCSVTEVEETKRLLRMIPICLTFIIPGVVSSIGNTYFVEQADLLNKKVGNLKATTVILLPYYNN
Disordered region (IsUnstruct)
**ALLWADCLAQFVMWTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVPVAAIIPISYIKPWNLRFGVSAICTVIATLLFLSGTCTYENKE**GSPLTSVFRVFVASTTKLFYRLP***********************FVQPTCGLGCLEKAAVILPNGTIEQQETNRWRLCSVTEVEETKRLLRMIPICLTFIIPGVVSSIGNTYFVEQADLLNKKVGNLKATTVILLPYY**
Disordered Region (DISOPRED)
MAALLWADCLAQFVMWTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPV*****************KGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINE**S*SLIQREFFKLLLFMVPVAAIIPISYIKPWNLRFGVSAICTVIATLLFLSGTCTYENKEPEGSPLTSVFRVFVASTTKLFYRLPSDASELYE******************PTCGLGCLEKAA*****************LCSVTEVEETKRLLRMIPICLTFIIPGVVSSIGNTYFVEQADLLNKKVGNLKATTVILLPYYNN
Disordered Region (DISEMBL)
MAALLWADCLAQFVMWTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASS*********AEEQLEIAINEHISLSLIQREFFKLLLFMVPVAAIIPISYIKPWNLRFGVSAICTVIATLLFLSGTCTYENKEPEGSPLTSVFRVFVASTTKLFYRLPSDASELYEGN**************VQPTCGLGCLEKAAVILPNGTIEQQETNRWRLCSVTEVEETKRLLRMIPICLTFIIPGVVSSIGNTYFVEQADLLNKKVGNLKATTVILLPYYNN
Disordered Region (DISPRO)
MAALLWADCLAQFVMWTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVPVAAIIPISYIKPWNLRFGVSAICTVIATLLFLSGTCTYENKEPEGSPLTSVFRVFVASTTKLFYRLPSDASELYEGNDTDDS***SDDSSFVQPTCGLGCLEKAAVILPNGTIEQQETNRWRLCSVTEVEETKRLLRMIPICLTFIIPGVVSSIGNTYFVEQADLLNKKVGNLKATTVILLPYYNN
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAALLWADCLAQFVMWTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVPVAAIIPISYIKPWNLRFGVSAICTVIATLLFLSGTCTYENKEPEGSPLTSVFRVFVASTTKLFYRLPSDASELYEGNDTDDSFSDSDDSSFVQPTCGLGCLEKAAVILPNGTIEQQETNRWRLCSVTEVEETKRLLRMIPICLTFIIPGVVSSIGNTYFVEQADLLNKKVGNLKATTVILLPYYNN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	348	2.2.26 [Sep-21-2011]
O80436	521	Putative peptide/nitrate	yes	no	0.893	0.596	0.388	3e-62
P46032	585	Peptide transporter PTR2	no	no	0.908	0.540	0.282	2e-28
Q9M390	570	Peptide transporter PTR1	no	no	0.893	0.545	0.309	2e-28
Q9LFB8	570	Peptide transporter PTR5	no	no	0.913	0.557	0.301	4e-27
P0CI03	575	Putative peptide/nitrate	no	no	0.867	0.525	0.256	1e-24
Q93Z20	590	Probable peptide/nitrate	no	no	0.870	0.513	0.290	3e-24
Q9M331	602	Probable peptide/nitrate	no	no	0.864	0.5	0.282	1e-22
Q3E9B5	609	Putative peptide/nitrate	no	no	0.873	0.499	0.290	2e-22
Q9FNL8	586	Peptide transporter PTR3-	no	no	0.738	0.438	0.271	1e-21
Q9M1I2	555	Probable peptide/nitrate	no	no	0.899	0.563	0.250	2e-21

>sp|O80436|PTR29_ARATH Putative peptide/nitrate transporter At2g38100 OS=Arabidopsis thaliana GN=At2g38100 PE=2 SV=1

 Score =  239 bits (609), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 130/335 (38%), Positives = 197/335 (58%), Gaps = 24/335 (7%)

Query: 1   MAALLWADCLAQFVMWTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIIS 60
           M+ L WA  +A F +W +M YLT   K+    AA IVN+F+G+  +  L MQ+LVD  I 
Sbjct: 1   MSVLSWAFTVAWFTLWMLMLYLTNEMKLKFTDAAAIVNVFAGVSAIGHLGMQFLVDAFIG 60

Query: 61  KYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFA 120
            +WML  S+LA+S G G L +S  P+L+G               G K LFY AL +++  
Sbjct: 61  HFWMLCLSTLAFSFGFGFLAISASPILSG--------------NGQKGLFYVALTVISVG 106

Query: 121 SSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVPVAAIIPISYIKPWNLRFG 180
               S+    F E+QLE   N+     L+      +  F+  + A I +  I PW +RF 
Sbjct: 107 IFGRSISLGVFTEDQLEDGRNKGNPAKLVSFVIGNVGNFVFLLLAAIAMPQISPWFVRFT 166

Query: 181 VSAICTVIATLLFLSGTCTYENKEPEGSPLTSVFRVFVASTTKLFYRLPSDASELYEGND 240
           + + C V+A L+F+SG C+Y+  +P GSPLT+VFRVF+AS +K+     +++S+LYE  +
Sbjct: 167 IPSGCEVLAMLIFISGACSYKRVKPGGSPLTTVFRVFMASASKMSCAYSNNSSQLYEKAE 226

Query: 241 TDDSFSDSDDSSFVQP-TCGLGCLEKAAVILPNGTIEQQETNRWRLCSVTEVEETKRLLR 299
            D           ++P T  L  L++AA+IL   ++EQQ  NRW+LC VTEVE+TK ++R
Sbjct: 227 CDQD---------IKPHTSSLRYLDRAAMILQTESLEQQRKNRWKLCRVTEVEQTKSVIR 277

Query: 300 MIPICLTFIIPGVVSSIGNTYFVEQADLLNKKVGN 334
            +P+  T +I G+V S+GNT+F+EQA+ ++ K G+
Sbjct: 278 TVPLFATSLISGIVFSLGNTFFLEQANHMDSKFGS 312

Arabidopsis thaliana (taxid: 3702)

>sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1

 Score =  127 bits (318), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/358 (28%), Positives = 160/358 (44%), Gaps = 42/358 (11%)

Query: 17  TMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGI 76
            ++ YLT       V AA  V  + G   +  L    L D    +YW +   S  Y +G+
Sbjct: 68  NLITYLTTKLHQGNVSAATNVTTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGM 127

Query: 77  GLLTMSTP-PVLAGFVGTCSEYKP-ECI-------VKGHKILFYAALGLLAFASSSCSVE 127
             LT+S   P L          KP ECI             +F+  L L+A  +      
Sbjct: 128 SALTLSASVPAL----------KPAECIGDFCPSATPAQYAMFFGGLYLIALGTGGIKPC 177

Query: 128 STEFAEEQLEIAINEHISLSLIQREFFKLLLFMVPVAAIIPISYI------KPWNLRFGV 181
            + F  +Q +   +      + +  FF    F + + A++  S +      + W L FG+
Sbjct: 178 VSSFGADQFDDTDSRE---RVRKASFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGI 234

Query: 182 SAICTVIATLLFLSGTCTYENKEPEGSPLTSVFRVFVASTTKLFYRLPSDASELYEGNDT 241
             +   +A   F  GT  Y  ++P GSP+T + +V VAS  K   ++P DA+ LYE  D 
Sbjct: 235 PTVFMGLAIASFFFGTPLYRFQKPGGSPITRISQVVVASFRKSSVKVPEDATLLYETQDK 294

Query: 242 DDSFSDSDDSSFVQPTCGLGCLEKAAVILPNGTIEQQETNRWRLCSVTEVEETKRLLRMI 301
           + + + S     ++ T     L+KAAVI    +     +N WRLC+VT+VEE K L+RM 
Sbjct: 295 NSAIAGSRK---IEHTDDCQYLDKAAVISEEESKSGDYSNSWRLCTVTQVEELKILIRMF 351

Query: 302 PICLTFIIPGVVSSIGNTYFVEQADLLNKKVGNLK-----------ATTVILLPYYNN 348
           PI  + II   V +  +T FV+Q   +N K+G+ +           A+ +I +P Y+ 
Sbjct: 352 PIWASGIIFSAVYAQMSTMFVQQGRAMNCKIGSFQLPPAALGTFDTASVIIWVPLYDR 409

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1

 Score =  126 bits (317), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/336 (30%), Positives = 155/336 (46%), Gaps = 25/336 (7%)

Query: 10  LAQFVMWT-MMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFS 68
           LA + M T ++ YL          AA  V  +SG   +  L   ++ D  + +YW +   
Sbjct: 43  LAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATF 102

Query: 69  SLAYSVGIGLLTMST--PPVLAGF--VGTCSEYKPECIVKGHKILFYAALGLLAFASSSC 124
              Y  G+ LLT+S   P +  G     TC     +  V      F+ AL ++A  +   
Sbjct: 103 VFIYVSGMTLLTLSASVPGLKPGNCNADTCHPNSSQTAV------FFVALYMIALGTGGI 156

Query: 125 SVESTEFAEEQL-EIAINEHISLSLIQREFFKLLLFMVPVAAIIP------ISYIKPWNL 177
               + F  +Q  E   NE I  S     FF    F + V A+I       I     W  
Sbjct: 157 KPCVSSFGADQFDENDENEKIKKS----SFFNWFYFSINVGALIAATVLVWIQMNVGWGW 212

Query: 178 RFGVSAICTVIATLLFLSGTCTYENKEPEGSPLTSVFRVFVASTTKLFYRLPSDASELYE 237
            FGV  +  VIA   F  G+  Y  + P GSPLT +F+V VA+  K+  ++P D S L+E
Sbjct: 213 GFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFE 272

Query: 238 GNDTDDSFSDSDDSSFVQPTCGLGCLEKAAVILPNGTIEQQETNRWRLCSVTEVEETKRL 297
              T D  S+   S  +  T  L   +KAAV   + +I+  E N WRLCSVT+VEE K +
Sbjct: 273 ---TADDESNIKGSRKLVHTDNLKFFDKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSI 329

Query: 298 LRMIPICLTFIIPGVVSSIGNTYFVEQADLLNKKVG 333
           + ++P+  T I+   V S  +T FV Q + +++ +G
Sbjct: 330 ITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMG 365

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1

 Score =  122 bits (306), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 101/335 (30%), Positives = 161/335 (48%), Gaps = 17/335 (5%)

Query: 10  LAQFVMWT-MMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFS 68
           LA + M T ++ YL +   +  V A+  V+ +SG      L   ++ D  + +YW +   
Sbjct: 44  LAYYGMSTNLINYLEKQMNMENVSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASF 103

Query: 69  SLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVES 128
            + Y  G+ LLT+S    + G   TCS         G   + + AL L+A  +       
Sbjct: 104 VVIYIAGMTLLTISAS--VPGLTPTCSGETCHATA-GQTAITFIALYLIALGTGGIKPCV 160

Query: 129 TEFAEEQLEIAINEHISLSLIQREFFKLLLFMVPVAAIIPIS---YIK---PWNLRFGVS 182
           + F  +Q +   +E    S  +  FF    F++ V A+I  S   +I+    W    GV 
Sbjct: 161 SSFGADQFD-DTDEKEKES--KSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVP 217

Query: 183 AICTVIATLLFLSGTCTYENKEPEGSPLTSVFRVFVASTTKLFYRLPSDASELYEGNDTD 242
            +   IA + F +G+  Y  ++P GSPLT + +V VAS  K   ++P D S LYE  D +
Sbjct: 218 TVAMAIAVVFFFAGSNFYRLQKPGGSPLTRMLQVIVASCRKSKVKIPEDESLLYENQDAE 277

Query: 243 DSFSDSDDSSFVQPTCGLGCLEKAAVILPNGTIEQQETNRWRLCSVTEVEETKRLLRMIP 302
            S   S     ++ T  L   +KAAV   +      +++ W+LC+VT+VEE K L+R++P
Sbjct: 278 SSIIGSRK---LEHTKILTFFDKAAVETESDNKGAAKSSSWKLCTVTQVEELKALIRLLP 334

Query: 303 ICLTFIIPGVVSSIGNTYFVEQADLLNKKVG-NLK 336
           I  T I+   V S   T FV Q + L++ +G N K
Sbjct: 335 IWATGIVFASVYSQMGTVFVLQGNTLDQHMGPNFK 369

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth.

Arabidopsis thaliana (taxid: 3702)

>sp|P0CI03|PTR28_ARATH Putative peptide/nitrate transporter At2g37900 OS=Arabidopsis thaliana GN=At2g37900 PE=2 SV=1

 Score =  114 bits (285), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 161/323 (49%), Gaps = 21/323 (6%)

Query: 21  YLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLT 80
           YLT +    +  A   VN +SG+  ++ L   ++ D  + +Y  ++ ++  Y +G+ LLT
Sbjct: 69  YLTTILNQDLKMAIRNVNYWSGVTTLMPLLGGFIADAYLGRYATVLVATTIYLMGLVLLT 128

Query: 81  MS--TPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEI 138
           MS   P +       C E +     K H++ F+ A+ L++  +         F  +Q + 
Sbjct: 129 MSWFIPGLKPCHQEVCVEPR-----KAHEVAFFIAIYLISIGTGGHKPSLESFGADQFD- 182

Query: 139 AINEHISLSLIQREFFK---LLLFMVPVAAIIPISYIKP---WNLRFGVSAICTVIATLL 192
             ++H+    ++  FF    + L    + A+  ++YI+    W +   +  +   I+ ++
Sbjct: 183 --DDHVEERKMKMSFFNWWNVSLCAGILTAVTAVAYIEDRVGWGVAGIILTVVMAISLII 240

Query: 193 FLSGTCTYENKEPEGSPLTSVFRVFVASTTKLFYRLPSDASELYEGNDTDDSFSDSDDSS 252
           F  G   Y  + P GSPLT + +VFVA+  K     PSD S L+E + T+ +        
Sbjct: 241 FFIGKPFYRYRTPSGSPLTPILQVFVAAIAKRNLPYPSDPSLLHEVSKTEFT-----SGR 295

Query: 253 FVQPTCGLGCLEKAAVILPNGTIEQQETNRWRLCSVTEVEETKRLLRMIPICLTFIIPGV 312
            +  T  L  L+KAA+I     +  ++ + WRL ++T+VEETK ++ +IPI  + +  G+
Sbjct: 296 LLCHTEHLKFLDKAAIIEDKNPLALEKQSPWRLLTLTKVEETKLIINVIPIWFSTLAFGI 355

Query: 313 VSSIGNTYFVEQADLLNKKVGNL 335
            ++  +T+F++QA  +++ +G  
Sbjct: 356 CATQASTFFIKQAITMDRHIGGF 378

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1

 Score =  113 bits (282), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 149/327 (45%), Gaps = 24/327 (7%)

Query: 17  TMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGI 76
            ++ Y T     S V AA  V I+ G   +  L    + D+   +YW +   S  Y +G+
Sbjct: 79  NLITYYTSELHESNVSAASDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGM 138

Query: 77  GLLTMSTP-PVLAGFVGT------CSEYKPECIVKGHKILFYAALGLLAFASSSCSVEST 129
            LLT+S   PVL            CS   P   V+    +F+  L L+A  +       +
Sbjct: 139 ALLTLSASLPVLKPAACAGVAAALCS---PATTVQ--YAVFFTGLYLIALGTGGIKPCVS 193

Query: 130 EFAEEQLEIAINEHISLSLIQREFFKLLLFMVPVAAIIPISYIK------PWNLRFGVSA 183
            F  +Q +   +      + +  FF    F + + + I  + +        W L F +  
Sbjct: 194 SFGADQFD---DTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPT 250

Query: 184 ICTVIATLLFLSGTCTYENKEPEGSPLTSVFRVFVASTTKLFYRLPSDASELYEGNDTDD 243
           +   ++   F  GT  Y  ++P GSP+T V +V VA+  KL   LP D S LYE  + + 
Sbjct: 251 VFMGVSIASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNLPEDISFLYETREKNS 310

Query: 244 SFSDSDDSSFVQPTCGLGCLEKAAVILPNGTIEQQETNRWRLCSVTEVEETKRLLRMIPI 303
             + S     +Q T G   L+KAAVI    +     +N W+LC+VT+VEE K L+RM PI
Sbjct: 311 MIAGSRK---IQHTDGYKFLDKAAVISEYESKSGAFSNPWKLCTVTQVEEVKTLIRMFPI 367

Query: 304 CLTFIIPGVVSSIGNTYFVEQADLLNK 330
             + I+  V+ S  +T FV+Q   +N+
Sbjct: 368 WASGIVYSVLYSQISTLFVQQGRSMNR 394

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M331|PTR45_ARATH Probable peptide/nitrate transporter At3g53960 OS=Arabidopsis thaliana GN=At3g53960 PE=2 SV=2

 Score =  107 bits (268), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 160/319 (50%), Gaps = 18/319 (5%)

Query: 21  YLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLT 80
           YLT +    +  A    N +SG+  ++ L   ++ D  + +Y  ++ ++  Y +G+ LLT
Sbjct: 68  YLTTILHQDLKMAVKNTNYWSGVTTLMPLLGGFVADAYLGRYGTVLLATTIYLMGLILLT 127

Query: 81  MS--TPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEI 138
           +S   P + A     C E +     K H+I F+ A+ L++  +         F  +Q E 
Sbjct: 128 LSWFIPGLKACHEDMCVEPR-----KAHEIAFFIAIYLISIGTGGHKPSLESFGADQFED 182

Query: 139 AINEHISLSLIQREFFKLLLFMVPVAAIIPISYIKPWNLRFGVSAI--CTVIAT--LLFL 194
              E   + +    ++   L    + A+  I YI+   + +GV++I    V+AT   +F 
Sbjct: 183 GHPEERKMKMSYFNWWNAGLCAGILTAVTVIVYIED-RIGWGVASIILTIVMATSFFIFR 241

Query: 195 SGTCTYENKEPEGSPLTSVFRVFVASTTKLFYRLPSDASELYEGNDTDDSFSDSDDSSFV 254
            G   Y  + P GSPLT + +VFVA+  K     PSD+S L+E   T++ ++       +
Sbjct: 242 IGKPFYRYRAPSGSPLTPMLQVFVAAIAKRNLPCPSDSSLLHE--LTNEEYTKG---RLL 296

Query: 255 QPTCGLGCLEKAAVILP-NGTIEQQETNRWRLCSVTEVEETKRLLRMIPICLTFIIPGVV 313
             +  L  L+KAAVI   N   + ++ + WRL +VT+VEE K L+ MIPI    +  GV 
Sbjct: 297 SSSKNLKFLDKAAVIEDRNENTKAEKQSPWRLATVTKVEEVKLLINMIPIWFFTLAFGVC 356

Query: 314 SSIGNTYFVEQADLLNKKV 332
           ++  +T F++QA ++++ +
Sbjct: 357 ATQSSTLFIKQAIIMDRHI 375

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E9B5|PTR51_ARATH Putative peptide/nitrate transporter At5g19640 OS=Arabidopsis thaliana GN=At5g19640 PE=2 SV=1

 Score =  107 bits (266), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 146/324 (45%), Gaps = 20/324 (6%)

Query: 21  YLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLT 80
           +LT V       AA  V+ ++G V +  L   +L D+   +Y       + + +G+GLL+
Sbjct: 90  FLTRVMGQGNAEAANNVSKWTGTVYMFSLVGAFLSDSYWGRYLTCTIFQVIFVIGVGLLS 149

Query: 81  MSTPPVLAGFVGTCSEYKPECIVKGH--KILFYAALGLLAFASSSCSVESTEFAEEQLEI 138
             +   L    G C +   EC         +FY ++ L+AF           F  +QL+ 
Sbjct: 150 FVSWFFLIKPRG-CGDGDLECNPPSSLGVAIFYLSVYLVAFGYGGHQPTLATFGADQLDD 208

Query: 139 AINEHISLSLIQREFFKLLLFMVPVAAIIP---ISYIKP---WNLRFGVSAICTVIATLL 192
             N   +       FF    F + V A+     + Y +    W   F VS    ++A + 
Sbjct: 209 DKNSKAA-------FFSYFYFALNVGALFSNTILVYFEDKGLWTEGFLVSLGSAIVALVA 261

Query: 193 FLSGTCTYENKEPEGSPLTSVFRVFVASTTKLFYRLPSDASELYEGNDTDDSFSDSDDSS 252
           FL+ T  Y   +P G+PL  V +VFVA+  K     P D  ELYE    + +   S    
Sbjct: 262 FLAPTRQYRYVKPCGNPLPRVAQVFVATARKWSVVRPGDPHELYELEGPESAIKGSRK-- 319

Query: 253 FVQPTCGLGCLEKAAVILPNGTIEQQETNRWRLCSVTEVEETKRLLRMIPICLTFIIPGV 312
            +  +     L++AAVI  N       +N WRLCSVT+VEE K +++++PI L  II  V
Sbjct: 320 -IFHSTKFLFLDRAAVITENDR-NGTRSNAWRLCSVTQVEEAKCVMKLLPIWLCTIIYSV 377

Query: 313 VSSIGNTYFVEQADLLNKKVGNLK 336
           + +   + FVEQ D++N  VG   
Sbjct: 378 IFTQMASLFVEQGDVMNAYVGKFH 401

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNL8|PTR4_ARATH Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1

 Score =  104 bits (259), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 140/302 (46%), Gaps = 45/302 (14%)

Query: 53  YLVDTIISKYWMLVFSSLAYSVGIGLLTMS------TPPVLAGFVGTCSEYKPECIVKGH 106
           Y+ D    +Y   V SS  Y +G+ LLT+S       PP        CS    E   K  
Sbjct: 90  YVADAHFGRYITFVISSAIYLLGMALLTLSVSLPGLKPP-------KCSTANVENCEKAS 142

Query: 107 KI---LFYAALGLLAFASSS-----CSVESTEFAEEQLEIAINEHISLSLIQREFFKLLL 158
            I   +F+ AL  LA  +        ++ + +F E   +  I++H         FF   +
Sbjct: 143 VIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFDPKDKIHKH--------SFFNWWM 194

Query: 159 FMVPVAAIIPIS---YIKP---WNLRFGVSAICTVIATLLFLSGTCTYENKEPEGSPLTS 212
           F +        +   Y++    W + +G+S +    +  +FL GT  Y +K P GSP T 
Sbjct: 195 FSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGTRLYRHKLPMGSPFTK 254

Query: 213 VFRVFVASTTKLFYRLPSDASELYEGNDTDDSFSDSDDSSFVQPTCGLGCLEKAAVILPN 272
           + RV VAS  K    + SD++  YE    + +   S  +  +  T  L  L +A+     
Sbjct: 255 MARVIVASLRKAREPMSSDSTRFYELPPMEYA---SKRAFPIHSTSSLRFLNRAS----- 306

Query: 273 GTIEQQETNRWRLCSVTEVEETKRLLRMIPICLTFIIPGVVSSIGNTYFVEQADLLNKKV 332
             ++   T++WRLC++TEVEETK++L+M+P+     +P ++ +   T F++Q   L++++
Sbjct: 307 --LKTGSTHKWRLCTITEVEETKQMLKMLPVLFVTFVPSMMLAQIMTLFIKQGTTLDRRL 364

Query: 333 GN 334
            N
Sbjct: 365 TN 366

Peptide transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1I2|PTR46_ARATH Probable peptide/nitrate transporter At3g54450 OS=Arabidopsis thaliana GN=At3g54450 PE=2 SV=1

 Score =  103 bits (257), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 161/351 (45%), Gaps = 38/351 (10%)

Query: 17  TMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGI 76
            ++ +LT     S   AA  +N + G+  +  +   +L D+I+ ++  ++ +S  Y +GI
Sbjct: 39  NLITFLTNELGQSTATAAKNINTWIGVSCMFPILGAFLADSILGRFKTVLLTSFIYLLGI 98

Query: 77  GLLTMSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQL 136
            +L +S   V                 +  + +F+ AL ++A            FA +Q 
Sbjct: 99  VMLPLSVTVVAR---------------RMREKVFFMALYVMAVGEGGHKPCVMTFAADQF 143

Query: 137 EIAINEHISLSLIQREFFKLLLFMVPVAAIIPISYIK---PWNLRFGVSAICTVIATLLF 193
             A  E  +       ++ + + +    A++ + +I+    W+L F + A   VIA ++F
Sbjct: 144 GEANAEEKAAKTSFFNYWYMAIVLASSIAVLALIFIQERVSWSLGFSIIAGSVVIAIVIF 203

Query: 194 LSGTCTYENKEPEGSPLTSVFRVFVASTTKLFYRLPSDASEL---YEGNDTDD-SFSDSD 249
           L G   Y  + P GSP T V +V VA+  K  +RL S        YE  D      ++S+
Sbjct: 204 LIGIPKYRKQVPVGSPFTRVAQVMVAALKK--WRLSSTRHHYGLCYEEEDEHKLESTNSN 261

Query: 250 DSSFVQPTCGLGCLEKAAVILPNGTIEQQETNRWRLCSVTEVEETKRLLRMIPICLTFII 309
               +  T     L+KA +I  +     +  N WRLC+V +VEE K +LR+IPI ++ I+
Sbjct: 262 QVYLLARTNQFRFLDKATII--DEIDHNKNRNPWRLCTVNQVEEVKLILRLIPIWISLIM 319

Query: 310 PGVVSSIGNTYFVEQADLLNKKVGN------------LKATTVILLPYYNN 348
                +  NT+F++Q  ++++ +GN            +  T +IL+P Y+ 
Sbjct: 320 FCATLTQLNTFFLKQGSMMDRTIGNHFTIPPAAFQSIVGVTILILIPLYDR 370

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	348
297827361	521	proton-dependent oligopeptide transport	0.893	0.596	0.394	2e-62
15224443	521	proton-dependent oligopeptide transport-	0.893	0.596	0.388	2e-60
395146502	571	putative peptide transporter [Linum usit	0.821	0.500	0.316	6e-31
357147605	559	PREDICTED: peptide transporter PTR2-like	0.893	0.556	0.308	1e-30
302759054	575	hypothetical protein SELMODRAFT_165561 [	0.887	0.537	0.310	1e-30
356553052	571	PREDICTED: peptide transporter PTR1-like	0.821	0.500	0.316	2e-30
302757812	575	hypothetical protein SELMODRAFT_78769 [S	0.887	0.537	0.307	4e-30
302821784	563	hypothetical protein SELMODRAFT_135522 [	0.882	0.545	0.308	6e-29
302781092	563	hypothetical protein SELMODRAFT_97239 [S	0.879	0.543	0.310	1e-28
255586505	1121	peptide transporter, putative [Ricinus c	0.873	0.271	0.296	1e-28

>gi|297827361|ref|XP_002881563.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297327402|gb|EFH57822.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  246 bits (627), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 132/335 (39%), Positives = 197/335 (58%), Gaps = 24/335 (7%)

Query: 1   MAALLWADCLAQFVMWTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIIS 60
           M+ L WA  +A F +W +M YLT   K+    AA IVN+F+G+  +  L MQ+LVD  I 
Sbjct: 1   MSVLSWAFTVAWFTLWMLMLYLTNEMKLKFTDAAAIVNVFAGVSAIGHLSMQFLVDAFIG 60

Query: 61  KYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFA 120
            +WML  S+LA+S G G L +S  P+L+G               G K LFY AL +++  
Sbjct: 61  HFWMLCLSTLAFSFGFGFLAISASPILSG--------------NGQKGLFYVALTVISVG 106

Query: 121 SSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVPVAAIIPISYIKPWNLRFG 180
               S+    F E+QLE   N+     L+      +   +  + A I +  I PW +RF 
Sbjct: 107 IFGRSISLGVFTEDQLEEGRNKGNPAKLVSFVIGNVGNLVFLLLAAIAMPQISPWFVRFA 166

Query: 181 VSAICTVIATLLFLSGTCTYENKEPEGSPLTSVFRVFVASTTKLFYRLPSDASELYEGND 240
           + + C V+A ++FLSGTC+Y   +P GSPLT++FRVFVAS +K+    P+++S+LYE  +
Sbjct: 167 IPSGCEVLAMMIFLSGTCSYRRVKPGGSPLTAIFRVFVASASKMSCAYPNNSSQLYEKAE 226

Query: 241 TDDSFSDSDDSSFVQP-TCGLGCLEKAAVILPNGTIEQQETNRWRLCSVTEVEETKRLLR 299
            D           ++P T  L CL++AA+IL    +EQQ  NRW+LC VTEVE+TK ++R
Sbjct: 227 CDQD---------IKPHTSSLRCLDRAAMILQTEPLEQQRKNRWKLCRVTEVEQTKSVIR 277

Query: 300 MIPICLTFIIPGVVSSIGNTYFVEQADLLNKKVGN 334
            +P+  T +I G+V S+GNT+F+EQA+ ++ K G+
Sbjct: 278 TVPLFATSLISGIVFSLGNTFFLEQANHMDSKFGS 312

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15224443|ref|NP_181345.1| proton-dependent oligopeptide transport-like protein [Arabidopsis thaliana] gi|75223187|sp|O80436.1|PTR29_ARATH RecName: Full=Putative peptide/nitrate transporter At2g38100 gi|3335358|gb|AAC27159.1| putative peptide/amino acid transporter [Arabidopsis thaliana] gi|330254395|gb|AEC09489.1| proton-dependent oligopeptide transport-like protein [Arabidopsis thaliana]

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 130/335 (38%), Positives = 197/335 (58%), Gaps = 24/335 (7%)

Query: 1   MAALLWADCLAQFVMWTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIIS 60
           M+ L WA  +A F +W +M YLT   K+    AA IVN+F+G+  +  L MQ+LVD  I 
Sbjct: 1   MSVLSWAFTVAWFTLWMLMLYLTNEMKLKFTDAAAIVNVFAGVSAIGHLGMQFLVDAFIG 60

Query: 61  KYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFA 120
            +WML  S+LA+S G G L +S  P+L+G               G K LFY AL +++  
Sbjct: 61  HFWMLCLSTLAFSFGFGFLAISASPILSG--------------NGQKGLFYVALTVISVG 106

Query: 121 SSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVPVAAIIPISYIKPWNLRFG 180
               S+    F E+QLE   N+     L+      +  F+  + A I +  I PW +RF 
Sbjct: 107 IFGRSISLGVFTEDQLEDGRNKGNPAKLVSFVIGNVGNFVFLLLAAIAMPQISPWFVRFT 166

Query: 181 VSAICTVIATLLFLSGTCTYENKEPEGSPLTSVFRVFVASTTKLFYRLPSDASELYEGND 240
           + + C V+A L+F+SG C+Y+  +P GSPLT+VFRVF+AS +K+     +++S+LYE  +
Sbjct: 167 IPSGCEVLAMLIFISGACSYKRVKPGGSPLTTVFRVFMASASKMSCAYSNNSSQLYEKAE 226

Query: 241 TDDSFSDSDDSSFVQP-TCGLGCLEKAAVILPNGTIEQQETNRWRLCSVTEVEETKRLLR 299
            D           ++P T  L  L++AA+IL   ++EQQ  NRW+LC VTEVE+TK ++R
Sbjct: 227 CDQD---------IKPHTSSLRYLDRAAMILQTESLEQQRKNRWKLCRVTEVEQTKSVIR 277

Query: 300 MIPICLTFIIPGVVSSIGNTYFVEQADLLNKKVGN 334
            +P+  T +I G+V S+GNT+F+EQA+ ++ K G+
Sbjct: 278 TVPLFATSLISGIVFSLGNTFFLEQANHMDSKFGS 312

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|395146502|gb|AFN53657.1| putative peptide transporter [Linum usitatissimum]

 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 144/306 (47%), Gaps = 20/306 (6%)

Query: 40  FSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKP 99
           +SG   +  L   +L D  + +YW +   S+ Y  G+ LL MS    + G   TC     
Sbjct: 74  WSGTCYLTPLLGAFLADAYLGRYWTIAGFSIIYVFGMTLLAMSAS--VPGLKPTCISKDN 131

Query: 100 ECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAI---NEHISLSLIQREFFKL 156
               +G   +F+ AL ++A  +       + +  +Q + A     EH      +  FF  
Sbjct: 132 CHATEGQSAVFFVALYMIALGTGGIKPCVSSYGADQFDDADVEEKEH------KASFFNW 185

Query: 157 LLFMVPVAAIIPISYIK------PWNLRFGVSAICTVIATLLFLSGTCTYENKEPEGSPL 210
             F + V A++  S +        W L FG+ AI   IA   F SGT  Y  + P GSPL
Sbjct: 186 FYFSINVGALVASSLLVWVQENVSWGLGFGIPAIAMAIAVASFFSGTRKYRYQTPGGSPL 245

Query: 211 TSVFRVFVASTTKLFYRLPSDASELYEGNDTDDSFSDSDDSSFVQPTCGLGCLEKAAVIL 270
           T + +V VAS  K     P+D S LYE  D++   + S     +  T     L+KAAV  
Sbjct: 246 TRICQVIVASCRKYKVSPPNDKSLLYESADSESGITGSRK---LDHTKDFSFLDKAAVET 302

Query: 271 PNGTIEQQETNRWRLCSVTEVEETKRLLRMIPICLTFIIPGVVSSIGNTYFVEQADLLNK 330
               I+    N WRLC+VT++EE K ++R++PI  T I+   V S  +  FV Q D ++K
Sbjct: 303 EKDHIKDTSVNPWRLCTVTQIEEFKAIIRLLPIWATGIVFAAVYSQMSNLFVLQGDTMDK 362

Query: 331 KVGNLK 336
           +VGN K
Sbjct: 363 RVGNSK 368

Source: Linum usitatissimum

Species: Linum usitatissimum

Genus: Linum

Family: Linaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357147605|ref|XP_003574406.1| PREDICTED: peptide transporter PTR2-like [Brachypodium distachyon]

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 101/327 (30%), Positives = 163/327 (49%), Gaps = 16/327 (4%)

Query: 17  TMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGI 76
            ++ YL +V   +   +A  V+ ++G   +  +   +L DT   KY  +  S + Y  G+
Sbjct: 48  NLVVYLGKVLHGTTASSAANVDTWNGTTFLTPVLGAFLADTYWGKYKTVAISIIFYLTGL 107

Query: 77  GLLTMST-PPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQ 135
            ++T S   P L     +C              +F+A+L L++  +         F  +Q
Sbjct: 108 LIITASALIPSLR--PASCEGTSCPPATGFQYFVFFASLYLVSVGTGGVKSALLPFGADQ 165

Query: 136 LEIAINEHISLSLIQREFFKLLLFMVPVAAIIP---ISYIK---PWNLRFGVSAICTVIA 189
            +   + +I  S  ++ FF L    + +   I    + +I+    W+L FG+S+IC ++A
Sbjct: 166 YD---DSNIEQSKKKQAFFSLFFIAINLGVFISGTVVVWIQQNVAWSLGFGISSICLIVA 222

Query: 190 TLLFLSGTCTYENKEPEGSPLTSVFRVFVASTTKLFYRLPSDASELYEGNDTDDSFSDSD 249
           T+ FL GT  Y  + P GSPL S+  VFVAS  K    +P D + L+EG+D D S    +
Sbjct: 223 TIAFLVGTPIYRVQLPTGSPLKSLIAVFVASFKKRKVEVPGDTTILFEGDDADLSNPGPN 282

Query: 250 DSSFVQPTCGLGCLEKAAVILPNGTIEQQETNR-WRLCSVTEVEETKRLLRMIPICLTFI 308
               +  T G  CL+KAAV+L +  I+   + R W LC+VT+VEE K LLRM+PI +T +
Sbjct: 283 K---LAHTDGFRCLDKAAVVLGDQEIKDSNSGRPWLLCTVTQVEEVKILLRMLPIWVTSV 339

Query: 309 IPGVVSSIGNTYFVEQADLLNKKVGNL 335
                     T FV+Q + LN K+G+ 
Sbjct: 340 FYAASMCQTATTFVQQGNALNTKIGSF 366

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302759054|ref|XP_002962950.1| hypothetical protein SELMODRAFT_165561 [Selaginella moellendorffii] gi|300169811|gb|EFJ36413.1| hypothetical protein SELMODRAFT_165561 [Selaginella moellendorffii]

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/328 (31%), Positives = 166/328 (50%), Gaps = 19/328 (5%)

Query: 17  TMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGI 76
            ++ YLT V   S   AA  VN+++G   +  L   ++ D+ + +YW        Y +G+
Sbjct: 55  NLVRYLTNVLHQSNATAASNVNLWTGTSSITALIGGFISDSYLGRYWTTTLFLFVYLLGM 114

Query: 77  GLLTMST--PPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLA---FASSSCSVESTEF 131
            LLT+S   P +      T  + +P    +     F   LG LA   +   + S+ + +F
Sbjct: 115 ILLTLSAALPSLKPPSCDTGVDCQPASPAQTGVFFFAVYLGALASGAYQPCNSSLGADQF 174

Query: 132 AEEQLEIAINEHISLSLIQREFFKLLLFMVPVAAIIPISYIK---PWNLRFGVSAICTVI 188
            EE  +    E   ++     F++ +     +A+ + + Y +    W+  FG+  I   +
Sbjct: 175 DEENPD----ELPKMTAYFNWFYQSMTVGALLASTL-VLYTQENVSWSFGFGICTIAMGL 229

Query: 189 ATLLFLSGTCTYENKEPEGSPLTSVFRVFVASTTKLFYRLPSDASELYEGNDTDDSFSDS 248
           A ++FL GT  Y N  P G+PL  VF+V VA+  K+  + P+DAS LYE  D   S   S
Sbjct: 230 AVVVFLIGTPLYRNHGPGGNPLVRVFQVLVATVRKMGLKNPNDASLLYEVADDKPSIKGS 289

Query: 249 DDSSFVQPTCGLGCLEKAAVILPNGTIEQQETNRWRLCSVTEVEETKRLLRMIPICLTFI 308
                +Q T  L  L+KAA+ILP+   + +E N WRLC+V++VEE K ++RM+PI L+ I
Sbjct: 290 RK---IQHTTNLQFLDKAAIILPS---DLEEVNPWRLCTVSQVEEVKCIIRMLPILLSSI 343

Query: 309 IPGVVSSIGNTYFVEQADLLNKKVGNLK 336
           +  +V S   T F+EQ   ++  +G  K
Sbjct: 344 VYSIVYSQMATLFLEQGGTMDTHLGRYK 371

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553052|ref|XP_003544872.1| PREDICTED: peptide transporter PTR1-like [Glycine max]

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 153/306 (50%), Gaps = 20/306 (6%)

Query: 40  FSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKP 99
           + G   +  L   ++ D  + +Y  ++  S+ Y +G+ LLT+S    + G   +C +   
Sbjct: 74  WGGTCYITPLIGAFVADAYLGRYLTILCFSIVYVIGMTLLTLSAS--VPGIKPSCDDQGN 131

Query: 100 ECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAI---NEHISLSLIQREFFKL 156
               +    + + AL L+A  +       + F  +Q + A     EH S       FF  
Sbjct: 132 CHATQAQSAVCFVALYLIALGTGGIKPCVSSFGADQFDDADEAEKEHKS------SFFNW 185

Query: 157 LLFMVPVAAIIPISYIK------PWNLRFGVSAICTVIATLLFLSGTCTYENKEPEGSPL 210
               + + A+I  S +        W   FG+ A+   IA + F SGT  Y N++P GSPL
Sbjct: 186 FYLSINIGALIAASVLVWVQTNVSWGWGFGIPAVAMAIAVVSFFSGTRLYRNQKPGGSPL 245

Query: 211 TSVFRVFVASTTKLFYRLPSDASELYEGNDTDDSFSDSDDSSFVQPTCGLGCLEKAAVIL 270
           T + +V VAS  K   ++P+D S LYE    +DS S  + S  +  T GL  L+KAAV+ 
Sbjct: 246 TRMCQVIVASIRKSDVQVPNDKSGLYE--IEEDSESAIEGSRKLDHTNGLRFLDKAAVLG 303

Query: 271 PNGTIEQQETNRWRLCSVTEVEETKRLLRMIPICLTFIIPGVVSSIGNTYFVEQADLLNK 330
            +  + +   N WRLC+VT+VEE K ++R++PI  T II   V S   +YF+ Q D +N 
Sbjct: 304 DSDNV-KDPVNPWRLCTVTQVEELKAIIRLLPIWATGIIFSTVYSQMGSYFILQGDTMNN 362

Query: 331 KVGNLK 336
           +VGN+K
Sbjct: 363 RVGNIK 368

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302757812|ref|XP_002962329.1| hypothetical protein SELMODRAFT_78769 [Selaginella moellendorffii] gi|300169190|gb|EFJ35792.1| hypothetical protein SELMODRAFT_78769 [Selaginella moellendorffii]

 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 165/328 (50%), Gaps = 19/328 (5%)

Query: 17  TMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGI 76
            ++ YLT V   S   AA  VN+++G   +  L   ++ D+ + +YW        Y +G+
Sbjct: 55  NLVRYLTNVLHQSNATAASNVNLWTGTSSITALIGGFISDSYLGRYWTTTLFLFVYLLGM 114

Query: 77  GLLTMST--PPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLA---FASSSCSVESTEF 131
            LLT+S   P +      T  + +P    +     F   LG LA   +   + S+ + +F
Sbjct: 115 ILLTLSAALPSLKPPSCDTGVDCQPASPAQTGVFFFAVYLGGLASGAYQPCNSSLGADQF 174

Query: 132 AEEQLEIAINEHISLSLIQREFFKLLLFMVPVAAIIPISYIK---PWNLRFGVSAICTVI 188
            EE  +    E   ++     F++ +     +A+ + + Y +    W+  FG+  I   +
Sbjct: 175 DEENPD----ELPKMTAYFNWFYQSMTVGALLASTL-VLYTQENVSWSFGFGICTIAMGL 229

Query: 189 ATLLFLSGTCTYENKEPEGSPLTSVFRVFVASTTKLFYRLPSDASELYEGNDTDDSFSDS 248
           A ++FL GT  Y N  P G+PL  VF+V VA+  K+  + P+DAS LYE  D   S   S
Sbjct: 230 AVVVFLIGTPLYRNHGPGGNPLVRVFQVLVATVRKMGLKNPNDASLLYEVADDKPSIKGS 289

Query: 249 DDSSFVQPTCGLGCLEKAAVILPNGTIEQQETNRWRLCSVTEVEETKRLLRMIPICLTFI 308
                +Q T     L+KAA+ILP+   + +E N WRLC+V++VEE K ++RM+PI L+ I
Sbjct: 290 RK---IQHTTNFQFLDKAAIILPS---DLEEVNPWRLCTVSQVEEVKCIIRMLPILLSSI 343

Query: 309 IPGVVSSIGNTYFVEQADLLNKKVGNLK 336
           +  +V S   T F+EQ   ++  +G  K
Sbjct: 344 VYSIVYSQMATLFLEQGGTMDTHLGRYK 371

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302821784|ref|XP_002992553.1| hypothetical protein SELMODRAFT_135522 [Selaginella moellendorffii] gi|300139622|gb|EFJ06359.1| hypothetical protein SELMODRAFT_135522 [Selaginella moellendorffii]

 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 100/324 (30%), Positives = 155/324 (47%), Gaps = 17/324 (5%)

Query: 18  MMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIG 77
           ++ YLT V       AA  V  +SG   +      +L D+   +YW +   S+ Y++G+ 
Sbjct: 46  LVVYLTTVLHQGNAAAAKSVTAWSGTCYLTTFIGAFLADSYWGRYWTIGILSIFYAIGMI 105

Query: 78  LLTMSTP-PVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQL 136
           LLT+S   P L   V        E    G    FY AL L+AF +       + F  +Q 
Sbjct: 106 LLTLSASLPSLKPSVCPLDNTPCESATPGQMAFFYTALYLIAFGTGGIKPCVSSFGADQF 165

Query: 137 EIA-INEHISLSLIQREFFKLLLFMVPVAAIIP---ISYIK---PWNLRFGVSAICTVIA 189
           +     E   ++     FF    F + V A+I    I YI+    W + F + A+  ++A
Sbjct: 166 DTGDPTERAHMT----SFFNWFYFSINVGALIASSVIVYIQVNVGWGIGFAIPAVTMLVA 221

Query: 190 TLLFLSGTCTYENKEPEGSPLTSVFRVFVASTTKLFYRLPSDASELYEGNDTDDSFSDSD 249
              F  GT  Y N++P GS LT + +V VA++ K   ++P+D   LYE  D + +   S 
Sbjct: 222 ICTFFFGTPLYRNQKPGGSSLTRIAQVIVAASAKSRVQVPADERLLYEVPDKESAIQGSR 281

Query: 250 DSSFVQPTCGLGCLEKAAVILPNGTIEQQETNRWRLCSVTEVEETKRLLRMIPICLTFII 309
               ++ T  L CL+KAA         +   + WRLC+VT+VEE K  +RM+PI  + I+
Sbjct: 282 K---IEHTDELTCLDKAAT--QTAPELENRPSPWRLCTVTQVEEVKIFVRMLPIWASTIV 336

Query: 310 PGVVSSIGNTYFVEQADLLNKKVG 333
              V S  +T+FVEQ   ++ K+G
Sbjct: 337 FFTVYSQMSTFFVEQGQRMDPKLG 360

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302781092|ref|XP_002972320.1| hypothetical protein SELMODRAFT_97239 [Selaginella moellendorffii] gi|300159787|gb|EFJ26406.1| hypothetical protein SELMODRAFT_97239 [Selaginella moellendorffii]

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 101/325 (31%), Positives = 156/325 (48%), Gaps = 19/325 (5%)

Query: 18  MMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIG 77
           ++ YLT V       AA  V  +SG   +      +L D+   +YW +   S+ Y++G+ 
Sbjct: 46  LVVYLTTVLHQGNAAAAKSVTAWSGTCYLTTFIGAFLADSYWGRYWTIGILSIFYAIGMI 105

Query: 78  LLTMSTP-PVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQL 136
           LLT+S   P L   V        E    G    FY AL L+AF +       + F  +Q 
Sbjct: 106 LLTLSASLPSLKPSVCPLDNTPCESATPGQMAFFYTALYLIAFGTGGIKPCVSSFGADQF 165

Query: 137 EIAI-NEHISLSLIQREFFKLLLFMVPVAAIIP---ISYIK---PWNLRFGVSAICTVIA 189
           +     E   ++     FF    F + V A+I    I YI+    W + F + A+  ++A
Sbjct: 166 DTGDPTERAHMT----SFFNWFYFSINVGALIASSVIVYIQVNVGWGIGFAIPAVTMLVA 221

Query: 190 TLLFLSGTCTYENKEPEGSPLTSVFRVFVASTTKLFYRLPSDASELYEGNDTDDSFSDSD 249
              F  GT  Y N++P GS LT + +V VA+  K   ++P+D   LYE  D + +   S 
Sbjct: 222 ICTFFFGTPLYRNQKPGGSSLTRIAQVIVAAIAKSRVQVPADERLLYEVPDKESAIQGSR 281

Query: 250 DSSFVQPTCGLGCLEKAAV-ILPNGTIEQQETNRWRLCSVTEVEETKRLLRMIPICLTFI 308
               ++ T  L CL+KAA    P+    +   + WRLC+VT+VEE K  +RM+PI  + I
Sbjct: 282 K---IEHTDELTCLDKAATQTAPD---LENRPSPWRLCTVTQVEEVKIFVRMLPIWASTI 335

Query: 309 IPGVVSSIGNTYFVEQADLLNKKVG 333
           +   V S  +T+FVEQ   ++ K+G
Sbjct: 336 VFFTVYSQMSTFFVEQGQRMDPKLG 360

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586505|ref|XP_002533893.1| peptide transporter, putative [Ricinus communis] gi|223526157|gb|EEF28493.1| peptide transporter, putative [Ricinus communis]

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/320 (29%), Positives = 154/320 (48%), Gaps = 16/320 (5%)

Query: 17  TMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGI 76
            ++ YL        V A   V  +SG   V+ L   +L D  + +YW +   S+ Y +G+
Sbjct: 51  NLVNYLKFQLNQGSVQAVNNVTNWSGTCYVMPLLGAFLADAYLGRYWTIASFSIIYVLGM 110

Query: 77  GLLTMSTPPVLAGFVGTCSEYKPECIVKGHKI-LFYAALGLLAFASSSCSVESTEFAEEQ 135
            LLT+S    L G + +C  +   C   G +  +F+  L L+A  +       + F  +Q
Sbjct: 111 TLLTLSAS--LHGLMPSCDNHTNVCNPTGKQTAVFFLGLYLIALGTGGIKPCVSSFGADQ 168

Query: 136 LEIAINEHISLSLIQREFFKLLLFMVPVAAIIPIS---YIKP---WNLRFGVSAICTVIA 189
            +   +   +    +  FF    F + + A++  S   +I+    W   FG+ A+   IA
Sbjct: 169 FD---DSDEAEKKKKSSFFNWFYFSINIGALVASSVLVWIQTNVGWGWGFGIPAVAMAIA 225

Query: 190 TLLFLSGTCTYENKEPEGSPLTSVFRVFVASTTKLFYRLPSDASELYEGNDTDDSFSDSD 249
            + F SG   Y N+ P GSPLT + +V VAS  K   ++P D S L+E +D + +   S 
Sbjct: 226 VMTFFSGIKLYRNQRPGGSPLTRICQVIVASLRKFRVQVPKDESLLFETSDEESAVKGSR 285

Query: 250 DSSFVQPTCGLGCLEKAAVILPNGTIEQQETNRWRLCSVTEVEETKRLLRMIPICLTFII 309
               +  T  L   +KAAV  P+  + +   N+W LC+VT+VEE K ++R++PI  T II
Sbjct: 286 K---LDHTEQLSFFDKAAVETPSDCV-KGSVNKWSLCTVTQVEELKSVIRLLPIWATGII 341

Query: 310 PGVVSSIGNTYFVEQADLLN 329
              V S   T FV Q + ++
Sbjct: 342 FSAVYSQMGTLFVLQGNTMD 361

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	348
TAIR|locus:2042937	521	AT2G38100 [Arabidopsis thalian	0.586	0.391	0.387	9.9e-56
TAIR|locus:2150124	570	PTR5 "peptide transporter 5" [	0.534	0.326	0.338	2.7e-26
TAIR|locus:2080235	570	PTR1 "peptide transporter 1" [	0.899	0.549	0.290	2e-24
TAIR|locus:2041125	585	PTR2 "peptide transporter 2" [	0.913	0.543	0.273	7.5e-24
TAIR|locus:2065568	575	AT2G37900 [Arabidopsis thalian	0.913	0.553	0.247	1.5e-23
TAIR|locus:2018032	590	PTR6 "peptide transporter 6" [	0.873	0.515	0.290	3.5e-23
TAIR|locus:2008855	590	NRT1.1 "nitrate transporter 1.	0.933	0.550	0.248	3.1e-21
TAIR|locus:2084500	602	AT3G53960 [Arabidopsis thalian	0.933	0.539	0.270	4.2e-21
TAIR|locus:2089935	590	AT3G21670 [Arabidopsis thalian	0.873	0.515	0.258	2.9e-20
TAIR|locus:2161428	586	AT5G46040 [Arabidopsis thalian	0.867	0.515	0.246	2.7e-19

TAIR|locus:2042937 AT2G38100 [Arabidopsis thaliana (taxid:3702)]

 Score = 381 (139.2 bits), Expect = 9.9e-56, Sum P(2) = 9.9e-56
 Identities = 83/214 (38%), Positives = 131/214 (61%)

Query:   131 FAEEQLEIAINEHISLSLIQREFFKLLLFMVPVAAIIPISYIKPWNLRFGVSAICTVIAT 190
             F E+QLE   N+     L+      +  F+  + A I +  I PW +RF + + C V+A 
Sbjct:   117 FTEDQLEDGRNKGNPAKLVSFVIGNVGNFVFLLLAAIAMPQISPWFVRFTIPSGCEVLAM 176

Query:   191 LLFLSGTCTYENKEPEGSPLTSVFRVFVASTTKLFYRLPSDASELYEGNDTXXXXXXXXX 250
             L+F+SG C+Y+  +P GSPLT+VFRVF+AS +K+     +++S+LYE  +          
Sbjct:   177 LIFISGACSYKRVKPGGSPLTTVFRVFMASASKMSCAYSNNSSQLYEKAECDQD------ 230

Query:   251 XXXVQP-TCGLGCLEKAAVILPNGTIEQQETNRWRLCSVTEVEETKRLLRMIPICLTFII 309
                ++P T  L  L++AA+IL   ++EQQ  NRW+LC VTEVE+TK ++R +P+  T +I
Sbjct:   231 ---IKPHTSSLRYLDRAAMILQTESLEQQRKNRWKLCRVTEVEQTKSVIRTVPLFATSLI 287

Query:   310 PGVVSSIGNTYFVEQADLLNKKVGNLKATTVILL 343
              G+V S+GNT+F+EQA+ ++ K G+      +LL
Sbjct:   288 SGIVFSLGNTFFLEQANHMDSKFGSWNLPLPLLL 321

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0015210 "uracil transmembrane transporter activity" evidence=ISS

GO:0015931 "nucleobase-containing compound transport" evidence=ISS

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 2.7e-26, Sum P(2) = 2.7e-26
 Identities = 67/198 (33%), Positives = 102/198 (51%)

Query:   153 FFKLLLFMVPVAAIIPIS---YIKP---WNLRFGVSAICTVIATLLFLSGTCTYENKEPE 206
             FF    F++ V A+I  S   +I+    W    GV  +   IA + F +G+  Y  ++P 
Sbjct:   182 FFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPG 241

Query:   207 GSPLTSVFRVFVASTTKLFYRLPSDASELYEGNDTXXXXXXXXXXXXVQPTCGLGCLEKA 266
             GSPLT + +V VAS  K   ++P D S LYE  D             ++ T  L   +KA
Sbjct:   242 GSPLTRMLQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRK---LEHTKILTFFDKA 298

Query:   267 AVILPNGTIEQQETNRWRLCSVTEVEETKRLLRMIPICLTFII-PGVVSSIGNTYFVEQA 325
             AV   +      +++ W+LC+VT+VEE K L+R++PI  T I+   V S +G T FV Q 
Sbjct:   299 AVETESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMG-TVFVLQG 357

Query:   326 DLLNKKVG-NLKATTVIL 342
             + L++ +G N K  +  L
Sbjct:   358 NTLDQHMGPNFKIPSASL 375

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 97/334 (29%), Positives = 146/334 (43%)

Query:    10 LAQFVMWT-MMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFS 68
             LA + M T ++ YL          AA  V  +SG   +  L   ++ D  + +YW +   
Sbjct:    43 LAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATF 102

Query:    69 SLAYSVGIGLLTMSTP-PVLAGFVGTCSEYKPECIVKGHKIXXXXXXXXXXXXXXXXXVE 127
                Y  G+ LLT+S   P L    G C+     C     +                    
Sbjct:   103 VFIYVSGMTLLTLSASVPGLKP--GNCNA--DTCHPNSSQTAVFFVALYMIALGTGGIKP 158

Query:   128 S-TEFAEEQL-EIAINEHISLSLIQREFFKLLLFMVPVAAIIPIS---YIKP---WNLRF 179
               + F  +Q  E   NE I  S     FF    F + V A+I  +   +I+    W   F
Sbjct:   159 CVSSFGADQFDENDENEKIKKS----SFFNWFYFSINVGALIAATVLVWIQMNVGWGWGF 214

Query:   180 GVSAICTVIATLLFLSGTCTYENKEPEGSPLTSVFRVFVASTTKLFYRLPSDASELYEGN 239
             GV  +  VIA   F  G+  Y  + P GSPLT +F+V VA+  K+  ++P D S L+E  
Sbjct:   215 GVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFE-- 272

Query:   240 DTXXXXXXXXXXXXVQPTCGLGCLEKAAVILPNGTIEQQETNRWRLCSVTEVEETKRLLR 299
              T            +  T  L   +KAAV   + +I+  E N WRLCSVT+VEE K ++ 
Sbjct:   273 -TADDESNIKGSRKLVHTDNLKFFDKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSIIT 331

Query:   300 MIPICLTFIIPGVVSSIGNTYFVEQADLLNKKVG 333
             ++P+  T I+   V S  +T FV Q + +++ +G
Sbjct:   332 LLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMG 365

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0015824 "proline transport" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 7.5e-24, P = 7.5e-24
 Identities = 92/336 (27%), Positives = 146/336 (43%)

Query:    10 LAQF-VMWTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFS 68
             LA + +   ++ YLT       V AA  V  + G   +  L    L D    +YW +   
Sbjct:    60 LAYYGIAGNLITYLTTKLHQGNVSAATNVTTWQGTCYLTPLIGAVLADAYWGRYWTIACF 119

Query:    69 SLAYSVGIGLLTMSTP-PVLAGFVGTC-SEYKPECIVKGHKIXXXXXXXXXXXXXXXXXV 126
             S  Y +G+  LT+S   P L      C  ++ P      + +                  
Sbjct:   120 SGIYFIGMSALTLSASVPALKP--AECIGDFCPSATPAQYAMFFGGLYLIALGTGGIKPC 177

Query:   127 ESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVPVAAIIPISYI------KPWNLRFG 180
              S+  A++  +    E +     +  FF    F + + A++  S +      + W L FG
Sbjct:   178 VSSFGADQFDDTDSRERVR----KASFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFG 233

Query:   181 VSAICTVIATLLFLSGTCTYENKEPEGSPLTSVFRVFVASTTKLFYRLPSDASELYEGND 240
             +  +   +A   F  GT  Y  ++P GSP+T + +V VAS  K   ++P DA+ LYE  D
Sbjct:   234 IPTVFMGLAIASFFFGTPLYRFQKPGGSPITRISQVVVASFRKSSVKVPEDATLLYETQD 293

Query:   241 TXXXXXXXXXXXXVQPTCGLGCLEKAAVILPNGTIEQQETNRWRLCSVTEVEETKRLLRM 300
                          ++ T     L+KAAVI    +     +N WRLC+VT+VEE K L+RM
Sbjct:   294 KNSAIAGSRK---IEHTDDCQYLDKAAVISEEESKSGDYSNSWRLCTVTQVEELKILIRM 350

Query:   301 IPICLTFIIPGVVSSIGNTYFVEQADLLNKKVGNLK 336
              PI  + II   V +  +T FV+Q   +N K+G+ +
Sbjct:   351 FPIWASGIIFSAVYAQMSTMFVQQGRAMNCKIGSFQ 386

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0015334 "high affinity oligopeptide transporter activity" evidence=IDA

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0015197 "peptide transporter activity" evidence=ISS

GO:0015833 "peptide transport" evidence=TAS

TAIR|locus:2065568 AT2G37900 [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 1.5e-23, P = 1.5e-23
 Identities = 84/340 (24%), Positives = 165/340 (48%)

Query:     3 ALLWADCLAQFVMWT-MMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISK 61
             A+ +++ L+ F + T ++ YLT +    +  A   VN +SG+  ++ L   ++ D  + +
Sbjct:    50 AIEFSERLSYFGLATNLVVYLTTILNQDLKMAIRNVNYWSGVTTLMPLLGGFIADAYLGR 109

Query:    62 YWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECIV--KGHKIXXXXXXXXXXX 119
             Y  ++ ++  Y +G+ LLTMS    + G +  C  ++  C+   K H++           
Sbjct:   110 YATVLVATTIYLMGLVLLTMSW--FIPG-LKPC--HQEVCVEPRKAHEVAFFIAIYLISI 164

Query:   120 XXXXXXVESTEFAEEQLEIAINEHISLSLIQREFFK---LLLFMVPVAAIIPISYIKP-- 174
                        F  +Q +   ++H+    ++  FF    + L    + A+  ++YI+   
Sbjct:   165 GTGGHKPSLESFGADQFD---DDHVEERKMKMSFFNWWNVSLCAGILTAVTAVAYIEDRV 221

Query:   175 -WNLRFGVSAICTVIATLLFLSGTCTYENKEPEGSPLTSVFRVFVASTTKLFYRLPSDAS 233
              W +   +  +   I+ ++F  G   Y  + P GSPLT + +VFVA+  K     PSD S
Sbjct:   222 GWGVAGIILTVVMAISLIIFFIGKPFYRYRTPSGSPLTPILQVFVAAIAKRNLPYPSDPS 281

Query:   234 ELYEGNDTXXXXXXXXXXXXVQPTCGLGCLEKAAVILPNGTIEQQETNRWRLCSVTEVEE 293
              L+E + T               T  L  L+KAA+I     +  ++ + WRL ++T+VEE
Sbjct:   282 LLHEVSKTEFTSGRLLCH-----TEHLKFLDKAAIIEDKNPLALEKQSPWRLLTLTKVEE 336

Query:   294 TKRLLRMIPICLTFIIPGVVSSIGNTYFVEQADLLNKKVG 333
             TK ++ +IPI  + +  G+ ++  +T+F++QA  +++ +G
Sbjct:   337 TKLIINVIPIWFSTLAFGICATQASTFFIKQAITMDRHIG 376

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 3.5e-23, P = 3.5e-23
 Identities = 94/324 (29%), Positives = 142/324 (43%)

Query:    18 MMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIG 77
             ++ Y T     S V AA  V I+ G   +  L    + D+   +YW +   S  Y +G+ 
Sbjct:    80 LITYYTSELHESNVSAASDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMA 139

Query:    78 LLTMSTP-PVL--AGFVGTCSEY-KPECIVKGHKIXXXXXXXXXXXXXXXXXVESTEFAE 133
             LLT+S   PVL  A   G  +    P   V+                     V S  F  
Sbjct:   140 LLTLSASLPVLKPAACAGVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSS--FGA 197

Query:   134 EQLEIAI-NEHISLSLIQREFFKLLLFMVPVAAIIP---ISYIKP---WNLRFGVSAICT 186
             +Q +     E +     +  FF    F + + + I    + +++    W L F +  +  
Sbjct:   198 DQFDDTDPRERVR----KASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFM 253

Query:   187 VIATLLFLSGTCTYENKEPEGSPLTSVFRVFVASTTKLFYRLPSDASELYEGNDTXXXXX 246
              ++   F  GT  Y  ++P GSP+T V +V VA+  KL   LP D S LYE   T     
Sbjct:   254 GVSIASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNLPEDISFLYE---TREKNS 310

Query:   247 XXXXXXXVQPTCGLGCLEKAAVILPNGTIEQQETNRWRLCSVTEVEETKRLLRMIPICLT 306
                    +Q T G   L+KAAVI    +     +N W+LC+VT+VEE K L+RM PI  +
Sbjct:   311 MIAGSRKIQHTDGYKFLDKAAVISEYESKSGAFSNPWKLCTVTQVEEVKTLIRMFPIWAS 370

Query:   307 FIIPGVVSSIGNTYFVEQADLLNK 330
              I+  V+ S  +T FV+Q   +N+
Sbjct:   371 GIVYSVLYSQISTLFVQQGRSMNR 394

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2008855 NRT1.1 "nitrate transporter 1.1" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 3.1e-21, P = 3.1e-21
 Identities = 84/338 (24%), Positives = 143/338 (42%)

Query:    18 MMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIG 77
             ++ YLT    +    AA  V  F G   +L L   ++ DT + +Y  +   +   + G+ 
Sbjct:    55 LVTYLTGTMHLGNATAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVS 114

Query:    78 LLTMSTPPVLAGF-VGTCSEY-KPECI-VKGHKIXXXXXXXXXXXXXXXXXVESTE-FAE 133
             +LT+ST  ++ G     C+      C    G ++                   S   F  
Sbjct:   115 ILTLST--IIPGLRPPRCNPTTSSHCEQASGIQLTVLYLALYLTALGTGGVKASVSGFGS 172

Query:   134 EQL-EIAINEHISLSLIQREFFKLL----LFMVPVAAIIPISYIKPWNLRFGVSAICTVI 188
             +Q  E    E   ++     FF  +    L  V V   +     + W   +G+ A   V+
Sbjct:   173 DQFDETEPKERSKMTYFFNRFFFCINVGSLLAVTVLVYVQDDVGRKWG--YGICAFAIVL 230

Query:   189 ATLLFLSGTCTYENKEPEGSPLTSVFRVFVASTTKLFYRLPSDASELYEGNDTXXXXXXX 248
             A  +FL+GT  Y  K+  GSP+T V  V VA+       LP+D S LY+ +D        
Sbjct:   231 ALSVFLAGTNRYRFKKLIGSPMTQVAAVIVAAWRNRKLELPADPSYLYDVDDIIAAEGSM 290

Query:   249 XXXXXVQPTCGLGCLEKAAVILPNGTIEQQETNRWRLCSVTEVEETKRLLRMIPICLTFI 308
                  +  T     L+KAA+      +     N+W L ++T+VEE K+++RM+PI  T I
Sbjct:   291 KGKQKLPHTEQFRSLDKAAIRDQEAGVTSNVFNKWTLSTLTDVEEVKQIVRMLPIWATCI 350

Query:   309 IPGVVSSIGNTYFVEQADLLNKKVGNLKATTVILLPYY 346
             +   V +   T  V Q++ L++ +G+ +     +  +Y
Sbjct:   351 LFWTVHAQLTTLSVAQSETLDRSIGSFEIPPASMAVFY 388

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0010167 "response to nitrate" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0015706 "nitrate transport" evidence=IMP;RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0052541 "plant-type cell wall cellulose metabolic process" evidence=RCA

GO:0052546 "cell wall pectin metabolic process" evidence=RCA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IMP

TAIR|locus:2084500 AT3G53960 [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 4.2e-21, P = 4.2e-21
 Identities = 94/347 (27%), Positives = 163/347 (46%)

Query:     6 WADCLAQFVMWT-MMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWM 64
             +++ L+ F + T ++ YLT +    +  A    N +SG+  ++ L   ++ D  + +Y  
Sbjct:    52 FSERLSYFGISTNLVVYLTTILHQDLKMAVKNTNYWSGVTTLMPLLGGFVADAYLGRYGT 111

Query:    65 LVFSSLAYSVGIGLLTMS--TPPVLAGFVGTCSEYKPECIVKGHKIXXXXXXXXXXXXXX 122
             ++ ++  Y +G+ LLT+S   P + A     C E  P    K H+I              
Sbjct:   112 VLLATTIYLMGLILLTLSWFIPGLKACHEDMCVE--PR---KAHEIAFFIAIYLISIGTG 166

Query:   123 XXXVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVPVAAIIPISYIKPWNLRFGV- 181
                     F  +Q E    E   + +    ++   L    + A+  I YI+   + +GV 
Sbjct:   167 GHKPSLESFGADQFEDGHPEERKMKMSYFNWWNAGLCAGILTAVTVIVYIED-RIGWGVA 225

Query:   182 SAICTVI-ATLLFLS--GTCTYENKEPEGSPLTSVFRVFVASTTKLFYRLPSDASELYEG 238
             S I T++ AT  F+   G   Y  + P GSPLT + +VFVA+  K     PSD+S L+E 
Sbjct:   226 SIILTIVMATSFFIFRIGKPFYRYRAPSGSPLTPMLQVFVAAIAKRNLPCPSDSSLLHE- 284

Query:   239 NDTXXXXXXXXXXXXVQPTCGLGCLEKAAVILP-NGTIEQQETNRWRLCSVTEVEETKRL 297
                            +  +  L  L+KAAVI   N   + ++ + WRL +VT+VEE K L
Sbjct:   285 ----LTNEEYTKGRLLSSSKNLKFLDKAAVIEDRNENTKAEKQSPWRLATVTKVEEVKLL 340

Query:   298 LRMIPICLTFIIPGVVSSIGNTYFVEQADLLNKKVGNLKATTVILLP 344
             + MIPI    +  GV ++  +T F++QA ++++   ++  T+ I+ P
Sbjct:   341 INMIPIWFFTLAFGVCATQSSTLFIKQAIIMDR---HITGTSFIVPP 384

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

TAIR|locus:2089935 AT3G21670 [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 2.9e-20, P = 2.9e-20
 Identities = 87/337 (25%), Positives = 155/337 (45%)

Query:    14 VMWTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYS 73
             +   ++ YL     IS   +A IV  F G + +L L   +L D  + +Y M+  S+   +
Sbjct:    53 ISMNLVTYLVGDLHISSAKSATIVTNFMGTLNLLGLLGGFLADAKLGRYKMVAISASVTA 112

Query:    74 VGIGLLTMSTPPVLAGFVGTCSEYKP---ECI-VKGHKIXXXXXXXXXXXXXXXXXVEST 129
             +G+ LLT++T  + +     C +++    +CI   GH++                   + 
Sbjct:   113 LGVLLLTVATT-ISSMRPPICDDFRRLHHQCIEANGHQLALLYVALYTIALGGGGIKSNV 171

Query:   130 E-FAEEQLEIAINEHISLSLIQREFFKLLLFMVPVA---AIIPISYIKP-----WNLRFG 180
               F  +Q + +  +     +    FF    F + V    A+I + Y++      W   +G
Sbjct:   172 SGFGSDQFDTSDPKEEKQMIF---FFNRFYFSISVGSLFAVIALVYVQDNVGRGWG--YG 226

Query:   181 VSAICTVIATLLFLSGTCTYENKEPEGSPLTSVFRVFVASTTKLFYRLPSDASELYEGND 240
             +SA   V+A ++ L GT  Y  K+P+GSP T+++RV   +  K     P+  S L  G D
Sbjct:   227 ISAATMVVAAIVLLCGTKRYRFKKPKGSPFTTIWRVGFLAWKKRKESYPAHPS-LLNGYD 285

Query:   241 TXXXXXXXXXXXXVQPTCGLGCLEKAAVILPNGTIEQ---QETNRWRLCSVTEVEETKRL 297
                          V  T  L CL+KAA+     +      +E + W + +VT+VEE K +
Sbjct:   286 NTT----------VPHTEMLKCLDKAAISKNESSPSSKDFEEKDPWIVSTVTQVEEVKLV 335

Query:   298 LRMIPICLTFIIPGVVSSIGNTYFVEQADLLNKKVGN 334
             ++++PI  T I+   + S   T+ VEQA  +++K+G+
Sbjct:   336 MKLVPIWATNILFWTIYSQMTTFTVEQATFMDRKLGS 372

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2161428 AT5G46040 [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 2.7e-19, P = 2.7e-19
 Identities = 79/321 (24%), Positives = 136/321 (42%)

Query:    21 YLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLT 80
             Y+T       V ++  V  + G   +  +   Y+ D    +Y   V SS  Y +G+ LLT
Sbjct:    58 YMTTKLHQGTVKSSNNVTNWVGTSWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLT 117

Query:    81 MST------PPVLA-GFVGTCSEYKPECIVKGHKIXXXXXXXXXXXXXXXXXVESTEFAE 133
             +S       PP  +   V  C +     +                       + + +F E
Sbjct:   118 LSVSLPGLKPPKCSTANVENCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDE 177

Query:   134 EQLEIAINEHISLSLIQREFFKLLLFMVPVAAIIPISYIKPWNLRFGVSAICTVIATLLF 193
                +  I++H   +      F    F   V   +  +    W + +G+S +    +  +F
Sbjct:   178 FDPKDKIHKHSFFNWWMFSIFFGTFFATTVLVYVQDNV--GWAIGYGLSTLGLAFSIFIF 235

Query:   194 LSGTCTYENKEPEGSPLTSVFRVFVASTTKLFYRLPSDASELYEGNDTXXXXXXXXXXXX 253
             L GT  Y +K P GSP T + RV VAS  K    + SD++  YE                
Sbjct:   236 LLGTRLYRHKLPMGSPFTKMARVIVASLRKAREPMSSDSTRFYE---LPPMEYASKRAFP 292

Query:   254 VQPTCGLGCLEKAAVILPNGTIEQQETNRWRLCSVTEVEETKRLLRMIPICLTFIIPGVV 313
             +  T  L  L +A+  L  G+     T++WRLC++TEVEETK++L+M+P+     +P ++
Sbjct:   293 IHSTSSLRFLNRAS--LKTGS-----THKWRLCTITEVEETKQMLKMLPVLFVTFVPSMM 345

Query:   314 SSIGNTYFVEQADLLNKKVGN 334
              +   T F++Q   L++++ N
Sbjct:   346 LAQIMTLFIKQGTTLDRRLTN 366

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh1_pm.C_scaffold_4001571 annotation not avaliable (521 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	348
pfam00854	372	pfam00854, PTR2, POT family	3e-13

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score = 69.6 bits (171), Expect = 3e-13
 Identities = 65/310 (20%), Positives = 110/310 (35%), Gaps = 65/310 (20%)

Query: 62  YWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFAS 121
           +  ++  S+ Y++G  LLT+   P     V                 LFY  L L+A  +
Sbjct: 1   FKTILLGSIIYAIGHVLLTLGAIPPSLSPV--------------QVALFYIGLYLIALGT 46

Query: 122 ----SSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVPVAAII---PISYIKP 174
                + S     F  +Q +   +           FF    F +   ++I      Y++ 
Sbjct: 47  GGIKPNVSA----FGADQFDETQDPRRDG------FFSWFYFSINAGSLIATIITPYLQQ 96

Query: 175 ---WNLRFGVSAICTVIATLLFLSGTCTYENKEPE-GSPLTSVFRVFVASTTKLFY-RLP 229
              + L FG+ A+  ++A L+FL G+  Y+ K P  GSP T      + +  K    +LP
Sbjct: 97  NVGYPLGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLP 156

Query: 230 SDASELYEGNDTDDSFSDSDDSSFVQPTCGLGCLEKAAVILPNGTIEQQETNRW-RLCSV 288
            D+  LY   +  +  S S                + AVI             W      
Sbjct: 157 KDSHWLYWALEKYNKRSISQ----------TKVHTRVAVI------FIPLPKFWALFDQQ 200

Query: 289 TEVEETKRLLRMIPICLTFIIPGVVSSIGNTYFVEQADLLNKKVGNL------------K 336
             V   + +L M+PI   +I+P  + +   T  V Q   +++ +  L             
Sbjct: 201 GSVWLLQAILLMLPIWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNP 260

Query: 337 ATTVILLPYY 346
              +ILLP  
Sbjct: 261 LAVLILLPIL 270

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	348
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	100.0
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	100.0
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	100.0
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	100.0
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.98
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.97
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.97
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.95
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.16
PRK10054	395	putative transporter; Provisional	99.14
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.11
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.1
TIGR00900	365	2A0121 H+ Antiporter protein.	99.09
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.02
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.01
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.99
TIGR00891	405	2A0112 putative sialic acid transporter.	98.99
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.98
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.97
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.97
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.95
PRK03545	390	putative arabinose transporter; Provisional	98.95
TIGR00893	399	2A0114 d-galactonate transporter.	98.95
PRK12382	392	putative transporter; Provisional	98.94
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.93
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.93
TIGR00895	398	2A0115 benzoate transport.	98.91
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.91
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.89
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.89
PRK12307	426	putative sialic acid transporter; Provisional	98.89
PRK03893	496	putative sialic acid transporter; Provisional	98.87
PRK09705	393	cynX putative cyanate transporter; Provisional	98.87
PRK05122	399	major facilitator superfamily transporter; Provisi	98.86
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.86
PRK10504	471	putative transporter; Provisional	98.86
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.86
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.86
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.85
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.85
PRK11663	434	regulatory protein UhpC; Provisional	98.85
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.84
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.84
PRK10091	382	MFS transport protein AraJ; Provisional	98.84
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.82
PRK03699	394	putative transporter; Provisional	98.81
PRK11043	401	putative transporter; Provisional	98.8
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.77
PRK10133	438	L-fucose transporter; Provisional	98.75
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.72
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.72
PRK09874	408	drug efflux system protein MdtG; Provisional	98.71
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.7
PLN00028	476	nitrate transmembrane transporter; Provisional	98.69
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.69
PRK10489	417	enterobactin exporter EntS; Provisional	98.69
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.68
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.68
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.68
PRK09528	420	lacY galactoside permease; Reviewed	98.67
PRK03633	381	putative MFS family transporter protein; Provision	98.67
TIGR00901	356	2A0125 AmpG-related permease.	98.67
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.67
TIGR00898	505	2A0119 cation transport protein.	98.67
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.66
PRK05122	399	major facilitator superfamily transporter; Provisi	98.66
PRK03699	394	putative transporter; Provisional	98.61
PRK15011	393	sugar efflux transporter B; Provisional	98.6
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.6
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.59
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.59
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.59
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.57
PRK09705	393	cynX putative cyanate transporter; Provisional	98.53
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.52
PRK10642	490	proline/glycine betaine transporter; Provisional	98.51
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.5
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.5
PRK09952	438	shikimate transporter; Provisional	98.5
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.48
PRK15075	434	citrate-proton symporter; Provisional	98.47
PRK10642	490	proline/glycine betaine transporter; Provisional	98.45
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.45
PRK11902	402	ampG muropeptide transporter; Reviewed	98.44
TIGR00805	633	oat sodium-independent organic anion transporter.	98.41
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.41
PRK09874	408	drug efflux system protein MdtG; Provisional	98.4
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.37
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.37
PTZ00207	591	hypothetical protein; Provisional	98.36
PRK15011	393	sugar efflux transporter B; Provisional	98.36
PRK09952	438	shikimate transporter; Provisional	98.36
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.36
TIGR00893	399	2A0114 d-galactonate transporter.	98.34
PRK03893	496	putative sialic acid transporter; Provisional	98.34
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.33
PRK10489	417	enterobactin exporter EntS; Provisional	98.33
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.32
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.32
PRK03633	381	putative MFS family transporter protein; Provision	98.32
PRK12382	392	putative transporter; Provisional	98.31
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.29
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.29
PRK11010	491	ampG muropeptide transporter; Validated	98.29
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.28
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.24
TIGR00891	405	2A0112 putative sialic acid transporter.	98.24
PRK15075	434	citrate-proton symporter; Provisional	98.23
PRK09669	444	putative symporter YagG; Provisional	98.22
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.22
PRK03545	390	putative arabinose transporter; Provisional	98.22
KOG0254	513	consensus Predicted transporter (major facilitator	98.22
PRK09848	448	glucuronide transporter; Provisional	98.2
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.2
PF13347	428	MFS_2: MFS/sugar transport protein	98.2
PRK10429	473	melibiose:sodium symporter; Provisional	98.2
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.19
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.18
PRK11010	491	ampG muropeptide transporter; Validated	98.18
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.17
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.16
PRK10133	438	L-fucose transporter; Provisional	98.15
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.14
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.14
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.14
PRK11663	434	regulatory protein UhpC; Provisional	98.13
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.13
PRK09528	420	lacY galactoside permease; Reviewed	98.12
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.1
PRK11462	460	putative transporter; Provisional	98.08
TIGR00901	356	2A0125 AmpG-related permease.	98.06
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.04
PRK09848	448	glucuronide transporter; Provisional	98.04
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.03
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.02
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.02
PF13347	428	MFS_2: MFS/sugar transport protein	98.02
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.01
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.0
PRK10091	382	MFS transport protein AraJ; Provisional	97.99
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	97.95
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	97.95
PRK10504	471	putative transporter; Provisional	97.94
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	97.94
PLN00028	476	nitrate transmembrane transporter; Provisional	97.93
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	97.91
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	97.91
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	97.9
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	97.89
TIGR00900	365	2A0121 H+ Antiporter protein.	97.88
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	97.88
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	97.84
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	97.84
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	97.83
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	97.82
KOG0569	485	consensus Permease of the major facilitator superf	97.8
TIGR00896	355	CynX cyanate transporter. This family of proteins	97.79
TIGR00895	398	2A0115 benzoate transport.	97.77
PRK12307	426	putative sialic acid transporter; Provisional	97.77
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	97.76
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	97.76
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	97.74
KOG2532	466	consensus Permease of the major facilitator superf	97.72
PRK10429	473	melibiose:sodium symporter; Provisional	97.7
PRK11902	402	ampG muropeptide transporter; Reviewed	97.68
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	97.68
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	97.65
PRK09669	444	putative symporter YagG; Provisional	97.64
PRK10213	394	nepI ribonucleoside transporter; Reviewed	97.54
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	97.5
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	97.48
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	97.46
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	97.46
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	97.44
PRK11043	401	putative transporter; Provisional	97.4
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	97.39
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	97.39
PRK10054	395	putative transporter; Provisional	97.38
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	97.37
PRK11462	460	putative transporter; Provisional	97.37
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	97.37
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	97.35
PRK10473	392	multidrug efflux system protein MdtL; Provisional	97.34
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.32
PRK11646	400	multidrug resistance protein MdtH; Provisional	97.31
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	97.29
COG2211	467	MelB Na+/melibiose symporter and related transport	97.29
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	97.29
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	97.28
PRK11195	393	lysophospholipid transporter LplT; Provisional	97.26
KOG2532	466	consensus Permease of the major facilitator superf	97.2
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.19
TIGR00898	505	2A0119 cation transport protein.	97.13
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	97.12
PF12832	77	MFS_1_like: MFS_1 like family	97.04
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	96.97
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	96.92
COG2211	467	MelB Na+/melibiose symporter and related transport	96.74
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	96.72
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	96.68
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	96.64
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	96.5
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	96.49
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	96.49
KOG0569	485	consensus Permease of the major facilitator superf	96.43
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	96.42
KOG2533	495	consensus Permease of the major facilitator superf	96.41
PRK15403	413	multidrug efflux system protein MdtM; Provisional	96.41
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	96.25
PRK11652	394	emrD multidrug resistance protein D; Provisional	96.16
KOG2533	495	consensus Permease of the major facilitator superf	95.89
PRK10207	489	dipeptide/tripeptide permease B; Provisional	95.52
COG0477	338	ProP Permeases of the major facilitator superfamil	95.5
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	95.31
KOG2615	451	consensus Permease of the major facilitator superf	95.16
KOG2563	480	consensus Permease of the major facilitator superf	94.88
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	94.64
PTZ00207	591	hypothetical protein; Provisional	94.1
KOG3626	735	consensus Organic anion transporter [Secondary met	94.03
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	93.57
TIGR00805	633	oat sodium-independent organic anion transporter.	93.17
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	93.13
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	93.08
PRK09584	500	tppB putative tripeptide transporter permease; Rev	92.77
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	92.71
KOG0254	513	consensus Predicted transporter (major facilitator	92.68
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	91.65
KOG2816	463	consensus Predicted transporter ADD1 (major facili	91.23
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	91.23
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	90.33
TIGR00788	468	fbt folate/biopterin transporter. The only functio	89.75
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	89.08
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	87.93
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	87.16
KOG3762	618	consensus Predicted transporter [General function	85.69
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	84.42
KOG0637	498	consensus Sucrose transporter and related proteins	80.94
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	80.68

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=100.00  E-value=8.9e-65  Score=517.60  Aligned_cols=333  Identities=31%  Similarity=0.433  Sum_probs=302.3

Q ss_pred             hHHHHHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhh
Q 048319            2 AALLWADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLT   80 (348)
Q Consensus         2 ~~~e~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~   80 (348)
                      ...|.+||++|||+ .||+.|+++.+|.+.+.|+..+++|.|.++++|++||++||.|+|||+||.++++++.+|..+++
T Consensus        43 l~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt  122 (571)
T KOG1237|consen   43 LGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLT  122 (571)
T ss_pred             HHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            46799999999999 99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccC-CccCCCCCCC--CCCCCccc--ccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHH
Q 048319           81 MSTP-PVLAGFVGTC--SEYKPECI--VKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFK  155 (348)
Q Consensus        81 ~s~~-p~~~~~~~~c--~~~~~~c~--~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~  155 (348)
                      +++. |.++|  ++|  ......|+  ++.+...+|.+|+++++|+||+|||+.+|||||||+.+++|++.+   .+|||
T Consensus       123 ~~a~~~~l~p--~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~---~~fFn  197 (571)
T KOG1237|consen  123 LSAMIPALLP--FMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGI---PSFFN  197 (571)
T ss_pred             HHHHhhhcCC--ccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCc---ccchh
Confidence            9988 88888  665  22334566  677899999999999999999999999999999999999988888   99999


Q ss_pred             HHHHHHh---hhcchhhcccc---cchhhHHHHHHHHHHHHHHHHhcCcccccCCCCCCchhHHHHHHHHHHhhccCCCC
Q 048319          156 LLLFMVP---VAAIIPISYIK---PWNLRFGVSAICTVIATLLFLSGTCTYENKEPEGSPLTSVFRVFVASTTKLFYRLP  229 (348)
Q Consensus       156 ~~y~~in---~~~~~~~~yi~---g~~~~F~i~~~~~~i~~~vf~~g~~~y~~~~p~gs~l~~~~~V~~~a~~~~~~~~~  229 (348)
                      |||+.+|   +++.++.+|+|   ||.++|++|+++|++++++|+.|++.|++++|.|||++++.||+++|++||+.+.+
T Consensus       198 W~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~~~  277 (571)
T KOG1237|consen  198 WFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAVVS  277 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHHhccCC
Confidence            9999999   89999999998   99999999999999999999999999999999999999999999999999998887


Q ss_pred             CCCcccccCCCCCCCCCCCCCCccccCCCCCchhhhhhhhCCCCCcccccCCcccccCcchhHHHHHhhhhhhHHHHHHH
Q 048319          230 SDASELYEGNDTDDSFSDSDDSSFVQPTCGLGCLEKAAVILPNGTIEQQETNRWRLCSVTEVEETKRLLRMIPICLTFII  309 (348)
Q Consensus       230 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ld~a~~~~~~~~~~~~~~~~w~~~~~~~Vee~k~~l~~lpif~~~ii  309 (348)
                      .+++.+ +..        ..+....+++++++++|||+++.+++..++...+||++|+++||||+|+++|++|+|++.++
T Consensus       278 ~~~~~~-~~~--------~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~  348 (571)
T KOG1237|consen  278 LDPEEL-YYD--------CTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTII  348 (571)
T ss_pred             Ccchhc-ccc--------ccccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhhhHHHHHHHH
Confidence            764433 111        11123345678999999999887665545567899999999999999999999999999999


Q ss_pred             HHHhhcccchHHHHHHHHhccCcCC-eeee-----------eEEEEeeccC
Q 048319          310 PGVVSSIGNTYFVEQADLLNKKVGN-LKAT-----------TVILLPYYNN  348 (348)
Q Consensus       310 ~~~~~~Q~~t~~v~Qa~~md~~ig~-f~iP-----------ili~iPi~d~  348 (348)
                      ||++++|+.|++++||.+|||++++ |++|           +++++|+|||
T Consensus       349 ~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr  399 (571)
T KOG1237|consen  349 YSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDR  399 (571)
T ss_pred             HHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcce
Confidence            9999999999999999999999986 9999           9999999997

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=100.00  E-value=1e-47  Score=398.38  Aligned_cols=276  Identities=22%  Similarity=0.371  Sum_probs=241.6

Q ss_pred             HHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccC
Q 048319           10 LAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLA   88 (348)
Q Consensus        10 ~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~   88 (348)
                      |+|||+ ++|++|+++.+|++++.|+.+++.|.+++|++|++||++||+++||||||+++.+++.+|++++++++.|...
T Consensus         1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~   80 (654)
T TIGR00926         1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG   80 (654)
T ss_pred             CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence            689999 9999999999999999999999999999999999999999999999999999999999999999997764321


Q ss_pred             CCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhc
Q 048319           89 GFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAA  165 (348)
Q Consensus        89 ~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~  165 (348)
                      .              ..+...++++|+++++|+|++|||++++++|||+++++   +++   +++|+||||++|   +++
T Consensus        81 ~--------------~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~---~s~F~~fY~~iNiGSlis  140 (654)
T TIGR00926        81 H--------------PLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLR---SRFFSFFYFAINAGSLIS  140 (654)
T ss_pred             c--------------chHHHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHH---HHHHHHHHHHHHHHHHHH
Confidence            1              12456688999999999999999999999999987543   346   999999999999   777


Q ss_pred             chhhcccc----------cchhhHHHHHHHHHHHHHHHHhcCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCCCccc
Q 048319          166 IIPISYIK----------PWNLRFGVSAICTVIATLLFLSGTCTYENKEPEGSPLTSVFRVFVASTTKLFYRLPSDASEL  235 (348)
Q Consensus       166 ~~~~~yi~----------g~~~~F~i~~~~~~i~~~vf~~g~~~y~~~~p~gs~l~~~~~V~~~a~~~~~~~~~~~~~~l  235 (348)
                      .+++++++          ||+++|++|+++|++++++|+.++++|++++|+|+++.++.++++.+.|+|+...+.     
T Consensus       141 ~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~-----  215 (654)
T TIGR00926       141 TIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSE-----  215 (654)
T ss_pred             HHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCc-----
Confidence            78888875          499999999999999999999999999999999999999999999988775432110     


Q ss_pred             ccCCCCCCCCCCCCCCccccCCCCCchhhhhhhhCCCCCcccccCCcccccCcchhHHHHHhhhhhhHHHHHHHHHHhhc
Q 048319          236 YEGNDTDDSFSDSDDSSFVQPTCGLGCLEKAAVILPNGTIEQQETNRWRLCSVTEVEETKRLLRMIPICLTFIIPGVVSS  315 (348)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~l~~~~~~~~ld~a~~~~~~~~~~~~~~~~w~~~~~~~Vee~k~~l~~lpif~~~ii~~~~~~  315 (348)
                                          + ...+|+|+++...                ++++|||+|++++++|+|+..++||++++
T Consensus       216 --------------------~-~~~~~ld~a~~~~----------------~~~~V~evkrll~il~l~i~~~ifw~~~~  258 (654)
T TIGR00926       216 --------------------H-WPLHWLDYAKDKH----------------DIRMIRSTKRLLRVLVLFIPLPMFWALFD  258 (654)
T ss_pred             --------------------c-cchhHHHHhcccc----------------ccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                                0 1246888776431                35789999999999999999999999999


Q ss_pred             ccchHHHHHHHHhccCcCCeeee-----------eEEEEeecc
Q 048319          316 IGNTYFVEQADLLNKKVGNLKAT-----------TVILLPYYN  347 (348)
Q Consensus       316 Q~~t~~v~Qa~~md~~ig~f~iP-----------ili~iPi~d  347 (348)
                      |++|+++.|+++||++++++++|           +++++|++|
T Consensus       259 Q~~s~~~~qa~~m~~~l~g~~ip~~~lq~~n~L~IIil~Pi~~  301 (654)
T TIGR00926       259 QQGSRWTLQATRMDGDVGGFEIQPDQMQVVNPLLILIFVPIFD  301 (654)
T ss_pred             cchhHHHHHHHHhcCccCCEecCHHHHHHHHHHHHHHhHHHHH
Confidence            99999999999999999999888           888888887

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=100.00  E-value=2e-47  Score=375.88  Aligned_cols=282  Identities=18%  Similarity=0.255  Sum_probs=223.0

Q ss_pred             HHHHHHHHHHHhH-HHHHHHhhhhhC----CchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhh
Q 048319            3 ALLWADCLAQFVM-WTMMEYLTEVWK----ISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIG   77 (348)
Q Consensus         3 ~~e~~Er~a~yg~-~~L~~Yl~~~l~----~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~   77 (348)
                      .+|+||||+|||| +.|++|++..++    +++++|..++++|++++|++|++|||+|||++|+||||+.|.+++.+||+
T Consensus        28 ~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~  107 (498)
T COG3104          28 FVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHL  107 (498)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence            5899999999999 999999998877    99999999999999999999999999999999999999999999999999


Q ss_pred             hhhcccCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHH
Q 048319           78 LLTMSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLL  157 (348)
Q Consensus        78 ll~~s~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~  157 (348)
                      +|+.++.                    .....++++|.+|++|+|++|||++++++|||+++||+    |   |..|+.|
T Consensus       108 ~L~~~~~--------------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr----r---D~gFt~f  160 (498)
T COG3104         108 VLAISSV--------------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR----R---DGGFTLF  160 (498)
T ss_pred             HHhcccc--------------------ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc----c---CCCccEE
Confidence            9998741                    12467999999999999999999999999999999994    6   8999999


Q ss_pred             HHHHh---hhcchhhcccc---cchhhHHHHHHHHHHHHHHHHhcCcccccCC--CCCCchhH---------HHHHHHHH
Q 048319          158 LFMVP---VAAIIPISYIK---PWNLRFGVSAICTVIATLLFLSGTCTYENKE--PEGSPLTS---------VFRVFVAS  220 (348)
Q Consensus       158 y~~in---~~~~~~~~yi~---g~~~~F~i~~~~~~i~~~vf~~g~~~y~~~~--p~gs~l~~---------~~~V~~~a  220 (348)
                      |+++|   ++++.++++++   ||+.+|+++++.|.+++++|+.+++++...+  |.-.|+..         +..++.++
T Consensus       161 Y~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (498)
T COG3104         161 YMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAA  240 (498)
T ss_pred             EEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHH
Confidence            99999   88999999987   9999999999999999999999999987664  22233211         11111111


Q ss_pred             H-hhccCCCCCCCcccccCCCCCCCCCCCCCCccccCCCCCch-hhhhhhhCCCCCcccccCCcccccCcchhHHHHHhh
Q 048319          221 T-TKLFYRLPSDASELYEGNDTDDSFSDSDDSSFVQPTCGLGC-LEKAAVILPNGTIEQQETNRWRLCSVTEVEETKRLL  298 (348)
Q Consensus       221 ~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-ld~a~~~~~~~~~~~~~~~~w~~~~~~~Vee~k~~l  298 (348)
                      . ....                              ..+.+++ +.+..........  ....+|   .+++ ||+||++
T Consensus       241 ~~~~~l------------------------------~~~~~~~~~~~~~i~~~~~~~--~~~~~~---~~~~-~er~r~~  284 (498)
T COG3104         241 LLTLLL------------------------------NQNTFSGVLLVISILIAIIYF--AEAFRS---PKVF-DERRRLL  284 (498)
T ss_pred             HHHHHH------------------------------HHHHHHHHHHHHHHHHHHHHH--HHHhcc---CccH-HHHHHHH
Confidence            1 0000                              0000110 0000000000000  001122   3445 8999999


Q ss_pred             hhhhHHHHHHHHHHhhcccchHHHHHHHHh-ccCcCCeeee-----------eEEEEeecc
Q 048319          299 RMIPICLTFIIPGVVSSIGNTYFVEQADLL-NKKVGNLKAT-----------TVILLPYYN  347 (348)
Q Consensus       299 ~~lpif~~~ii~~~~~~Q~~t~~v~Qa~~m-d~~ig~f~iP-----------ili~iPi~d  347 (348)
                      ++||+|+..++||++++|++|.+..|+.+| ||++.||++|           |+++.|+++
T Consensus       285 ~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a  345 (498)
T COG3104         285 AAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILA  345 (498)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHH
Confidence            999999999999999999999999999766 7885569998           999999875

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=100.00  E-value=7.6e-37  Score=298.65  Aligned_cols=252  Identities=28%  Similarity=0.422  Sum_probs=177.2

Q ss_pred             hHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccch
Q 048319           62 YWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAIN  141 (348)
Q Consensus        62 ~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~  141 (348)
                      ||||++|++++.+|+++|++++.|...+             ++.+.+.+++||+++++|+|++|||+++|+||||+++++
T Consensus         1 yktI~~g~~~~~~G~~ll~l~~~~~~~~-------------~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~   67 (372)
T PF00854_consen    1 YKTILLGSIVYLLGHVLLTLSAIPPSLP-------------SGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDD   67 (372)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHHTSSSC-------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTT
T ss_pred             CHhhhHHHHHHHHHHHHhHHHHhcchhh-------------hhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccch
Confidence            7999999999999999999999865443             345678999999999999999999999999999998853


Q ss_pred             hhhhhhhhhhhHHHHHHHHHh---hhcchhhcccc---cchhhHHHHHHHHHHHHHHHHhcCcccccC-CCCCCchhH-H
Q 048319          142 EHISLSLIQREFFKLLLFMVP---VAAIIPISYIK---PWNLRFGVSAICTVIATLLFLSGTCTYENK-EPEGSPLTS-V  213 (348)
Q Consensus       142 ~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi~---g~~~~F~i~~~~~~i~~~vf~~g~~~y~~~-~p~gs~l~~-~  213 (348)
                         +++   +++||||||++|   +++.+.++|+|   ||+++|++|+++|++++++|+.++++|+++ +|.|+++.+ .
T Consensus        68 ---~~~---~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~  141 (372)
T PF00854_consen   68 ---SRR---DSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFI  141 (372)
T ss_dssp             ---THH---HHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--S
T ss_pred             ---hhh---hhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhH
Confidence               246   899999999999   78899999998   999999999999999999999999999999 788999998 5


Q ss_pred             HHHHHHHHhhccCCCCCCCcccccCCCCCCCCCCCCCCccccCCCCCchhhhhhhhCCCCCcccccCCccc-ccCcchhH
Q 048319          214 FRVFVASTTKLFYRLPSDASELYEGNDTDDSFSDSDDSSFVQPTCGLGCLEKAAVILPNGTIEQQETNRWR-LCSVTEVE  292 (348)
Q Consensus       214 ~~V~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ld~a~~~~~~~~~~~~~~~~w~-~~~~~~Ve  292 (348)
                      .+++.++.++++...|.+...+++.....     .    ...........+.+......       ...|. .|+++++|
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~  205 (372)
T PF00854_consen  142 KLVLVAAFKKRKLAVPKGSSWLDWALFQY-----S----ERSIFGIIVFIRAAVIFFPE-------IFFWALFCQVQRVE  205 (372)
T ss_dssp             HHHHHHHHHHHCCCH-HHHHHHHHHHHHH-----C----CCCCCCCCCHHHHHHHHCCC-------HHHHTTTSSTTTHH
T ss_pred             HHHHHHHHHHhhcccccchHHHHHhhhhh-----h----hhhhhhhhhhccchhhhhhh-------hhhcccCCccceee
Confidence            66666666766665442211111110000     0    00000111122222222111       11222 27889999


Q ss_pred             HHHHhhhhhhHHHHHHHHHHhhcccchHHHHHHHHhccCcCC-eeee-----------eEEEEeeccC
Q 048319          293 ETKRLLRMIPICLTFIIPGVVSSIGNTYFVEQADLLNKKVGN-LKAT-----------TVILLPYYNN  348 (348)
Q Consensus       293 e~k~~l~~lpif~~~ii~~~~~~Q~~t~~v~Qa~~md~~ig~-f~iP-----------ili~iPi~d~  348 (348)
                      ++|.+.+++|+|.+.++|+.++.|..++.+.|+.+||+.+++ +++|           +++++|++|+
T Consensus       206 ~~k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~  273 (372)
T PF00854_consen  206 ELKALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDR  273 (372)
T ss_dssp             HCCHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHH
T ss_pred             eeeeeeeccccCeEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999988 9998           8899999874

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.98  E-value=1.6e-31  Score=270.59  Aligned_cols=273  Identities=11%  Similarity=0.125  Sum_probs=203.9

Q ss_pred             hHHHHHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhh
Q 048319            2 AALLWADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLT   80 (348)
Q Consensus         2 ~~~e~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~   80 (348)
                      +++|+|||++|||+ +++.+|+++.+|+++++++.+++.|....|+++++||+++||++||||+++++.+++.+|++++.
T Consensus        20 ~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~   99 (489)
T PRK10207         20 FFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTG   99 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHH
Confidence            47899999999999 99999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cccCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHH
Q 048319           81 MSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFM  160 (348)
Q Consensus        81 ~s~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~  160 (348)
                      ++..                     ....+++++.++++|.|++|||.+++++|||+++++    ++   ++.|+++|++
T Consensus       100 ~~~~---------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~----~~---~~~~~~~~~~  151 (489)
T PRK10207        100 MSLL---------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDP----RL---DGAFTLFYMS  151 (489)
T ss_pred             Hhcc---------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCch----hh---hcchhHHHHH
Confidence            7521                     123466889999999999999999999999987653    24   6789999999


Q ss_pred             Hh---hhcchhhcccc---cchhhHHHHHHHHHHHHHHHHhcCcccccC--CCCCCchh--HHHHHHH------HHHhhc
Q 048319          161 VP---VAAIIPISYIK---PWNLRFGVSAICTVIATLLFLSGTCTYENK--EPEGSPLT--SVFRVFV------ASTTKL  224 (348)
Q Consensus       161 in---~~~~~~~~yi~---g~~~~F~i~~~~~~i~~~vf~~g~~~y~~~--~p~gs~l~--~~~~V~~------~a~~~~  224 (348)
                      +|   ++++++.++++   ||+++|.++++.++++++.+..+++.+++.  +|++++..  +...+..      ..... 
T Consensus       152 ~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~-  230 (489)
T PRK10207        152 INIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAW-  230 (489)
T ss_pred             HHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHH-
Confidence            99   77888888886   999999999999999999998888777654  34444331  1111000      00000 


Q ss_pred             cCCCCCCCcccccCCCCCCCCCCCCCCccccCCCCCchhhhhhhhCCCCCcccccCCcccccCcchhHHHHHhhhhhhHH
Q 048319          225 FYRLPSDASELYEGNDTDDSFSDSDDSSFVQPTCGLGCLEKAAVILPNGTIEQQETNRWRLCSVTEVEETKRLLRMIPIC  304 (348)
Q Consensus       225 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ld~a~~~~~~~~~~~~~~~~w~~~~~~~Vee~k~~l~~lpif  304 (348)
                      ..+.. +..                        .  -.+..+......       ..-++....++ +|+++.+..++++
T Consensus       231 ~~~~~-~~~------------------------~--~~~~~~~~i~~~-------~f~~~~~~~~~-~~r~r~~~~~~l~  275 (489)
T PRK10207        231 LMHNV-EVA------------------------N--LVLIVLSIVVTI-------IFFREAFKLDK-TGRNKMFVAFVLM  275 (489)
T ss_pred             HHhhh-hHH------------------------H--HHHHHHHHHHHH-------HHHHHHhcCCH-HHHHHHHHHHHHH
Confidence            00000 000                        0  000000000000       00000011223 4578888899999


Q ss_pred             HHHHHHHHhhcccchHHHHHHH-HhccCcCCeeee
Q 048319          305 LTFIIPGVVSSIGNTYFVEQAD-LLNKKVGNLKAT  338 (348)
Q Consensus       305 ~~~ii~~~~~~Q~~t~~v~Qa~-~md~~ig~f~iP  338 (348)
                      +..++||.+++|+.+....|++ ++|+++.|+++|
T Consensus       276 ~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~  310 (489)
T PRK10207        276 LEAVVFYILYAQMPTSLNFFAINNVHHEILGFSIN  310 (489)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHhccccccceEEC
Confidence            9999999999999999999987 578888788876

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.97  E-value=3.6e-31  Score=266.88  Aligned_cols=281  Identities=15%  Similarity=0.192  Sum_probs=207.7

Q ss_pred             hHHHHHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhh
Q 048319            2 AALLWADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLT   80 (348)
Q Consensus         2 ~~~e~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~   80 (348)
                      +.+|+|||++|||+ ..+.+|+++.+|++..+++.+.+.+....++++++||+++||++||||+++++.++..+|++++.
T Consensus        15 ~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~   94 (493)
T PRK15462         15 VALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLG   94 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999 99999999999999999999999999999999999999999999999999999999999998776


Q ss_pred             cccCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHH
Q 048319           81 MSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFM  160 (348)
Q Consensus        81 ~s~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~  160 (348)
                      ....                     ....+++++.++++|.|..|||.+++++|+|+++|+    +|   ++.|+++|+.
T Consensus        95 ~~~~---------------------~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~----~R---~sgf~i~Y~~  146 (493)
T PRK15462         95 ASEI---------------------HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDP----RR---DGGFSLMYAA  146 (493)
T ss_pred             Hhhc---------------------chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCc----cc---cceehHHHHH
Confidence            4210                     113466788889999999999999999999987765    25   8899999999


Q ss_pred             Hh---hhcchhhcccc---cchhhHHHHHHHHHHHHHHHHhcCcccccCCC-CCCchh--HHHHHH-----HHH-----H
Q 048319          161 VP---VAAIIPISYIK---PWNLRFGVSAICTVIATLLFLSGTCTYENKEP-EGSPLT--SVFRVF-----VAS-----T  221 (348)
Q Consensus       161 in---~~~~~~~~yi~---g~~~~F~i~~~~~~i~~~vf~~g~~~y~~~~p-~gs~l~--~~~~V~-----~~a-----~  221 (348)
                      +|   .+++.++++++   ||+++|+++++.|++++++++.+++.+.+..+ +.+|..  +..+..     ...     .
T Consensus       147 ~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (493)
T PRK15462        147 GNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPAL  226 (493)
T ss_pred             HHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHH
Confidence            99   78888888886   99999999999999999999998887754311 112221  100000     000     0


Q ss_pred             hhccCCCCCCCcccccCCCCCCCCCCCCCCccccCCCCCchh-hhhhhhCCCCCcccccCCcccccCcchhHHHHHhhhh
Q 048319          222 TKLFYRLPSDASELYEGNDTDDSFSDSDDSSFVQPTCGLGCL-EKAAVILPNGTIEQQETNRWRLCSVTEVEETKRLLRM  300 (348)
Q Consensus       222 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l-d~a~~~~~~~~~~~~~~~~w~~~~~~~Vee~k~~l~~  300 (348)
                      .....         .                   + .....+ -.+.....       ..--+...+....||+|+++.+
T Consensus       227 ~~~~~---------~-------------------~-~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~er~r~~~~  270 (493)
T PRK15462        227 ITVLF---------W-------------------K-EWSVYALIVATIIGL-------GVLAKIYRKAENQKQRKELGLI  270 (493)
T ss_pred             HHHHH---------H-------------------H-HHHHHHHHHHHHHHH-------HHHHHHHHhcCCHHHHhhHHHH
Confidence            00000         0                   0 000000 00000000       0000000000123789999999


Q ss_pred             hhHHHHHHHHHHhhcccchHHHHHH-HHhccCcCCeeee-----------eEEEEeec
Q 048319          301 IPICLTFIIPGVVSSIGNTYFVEQA-DLLNKKVGNLKAT-----------TVILLPYY  346 (348)
Q Consensus       301 lpif~~~ii~~~~~~Q~~t~~v~Qa-~~md~~ig~f~iP-----------ili~iPi~  346 (348)
                      +++++..++||+.|+|++|..+.-+ +++||++++|++|           |+++.|++
T Consensus       271 ~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~  328 (493)
T PRK15462        271 VTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFL  328 (493)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHH
Confidence            9999999999999999999877766 6799999999999           66667753

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.97  E-value=2.4e-30  Score=261.02  Aligned_cols=286  Identities=15%  Similarity=0.145  Sum_probs=210.3

Q ss_pred             hHHHHHHHHHHHhH-HHHHHHhhhh--hCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhh
Q 048319            2 AALLWADCLAQFVM-WTMMEYLTEV--WKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGL   78 (348)
Q Consensus         2 ~~~e~~Er~a~yg~-~~L~~Yl~~~--l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~l   78 (348)
                      .+.|++||++|||+ ++|.+|++++  +|++..+++.+.+.+....++.+++||+++||++||||+++++.+++.+|+++
T Consensus        16 ~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~   95 (475)
T TIGR00924        16 FFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFM   95 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence            46899999999999 9999999987  99999999999999999999999999999999889999999999999999998


Q ss_pred             hhcccCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHH
Q 048319           79 LTMSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLL  158 (348)
Q Consensus        79 l~~s~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y  158 (348)
                      +.++.                      +...+++++.++++|.|+++|+.+++++|++++++++   +|   ++.|+++|
T Consensus        96 ~~~~~----------------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~---~r---~~~~~~~~  147 (475)
T TIGR00924        96 LAMSI----------------------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP---RR---DGGFTLFY  147 (475)
T ss_pred             HHhcc----------------------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc---cc---cceehhHH
Confidence            88642                      2356778888999999999999999999999876532   25   77899999


Q ss_pred             HHHh---hhcchhhcccc---cchhhHHHHHHHHHHHHHHHHhcCcccccCCCCCCchhHH-----H--HH----HHHHH
Q 048319          159 FMVP---VAAIIPISYIK---PWNLRFGVSAICTVIATLLFLSGTCTYENKEPEGSPLTSV-----F--RV----FVAST  221 (348)
Q Consensus       159 ~~in---~~~~~~~~yi~---g~~~~F~i~~~~~~i~~~vf~~g~~~y~~~~p~gs~l~~~-----~--~V----~~~a~  221 (348)
                      +++|   .+++.+.++++   ||+++|.++++.++++.++++..++.|++.+++++++.+.     .  .+    +...+
T Consensus       148 ~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (475)
T TIGR00924       148 MSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVF  227 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHH
Confidence            9999   78888888886   9999999999999999999998888887665544433211     0  00    00111


Q ss_pred             hhccCCCCCCCcccccCCCCCCCCCCCCCCccccCCCCCchhhhhhhhCCCCCcccccCCcccccCcchhHHHHHhhhhh
Q 048319          222 TKLFYRLPSDASELYEGNDTDDSFSDSDDSSFVQPTCGLGCLEKAAVILPNGTIEQQETNRWRLCSVTEVEETKRLLRMI  301 (348)
Q Consensus       222 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ld~a~~~~~~~~~~~~~~~~w~~~~~~~Vee~k~~l~~l  301 (348)
                      +.... ......                 .....+     ....++.....+    ...+|    +.+++| +++..+++
T Consensus       228 ~~~~~-~~~~~~-----------------~~~~~~-----~~~~~~~~~~~~----~~~~~----~~~~~~-~~~~~~~l  275 (475)
T TIGR00924       228 FCAWL-MHHVVI-----------------ANILLM-----TVTLAVIIFFFR----LAFKP----RLDAVA-RNKMYAYI  275 (475)
T ss_pred             HHHHH-HhccHH-----------------HHHHHH-----HHHHHHHHHHHH----HHHhc----cCCHHH-HhHHHHHH
Confidence            11000 000000                 000000     000111110000    00111    234444 55567799


Q ss_pred             hHHHHHHHHHHhhcccchHHH-HHHHHhccCcCCeeee-----------eEEEEeecc
Q 048319          302 PICLTFIIPGVVSSIGNTYFV-EQADLLNKKVGNLKAT-----------TVILLPYYN  347 (348)
Q Consensus       302 pif~~~ii~~~~~~Q~~t~~v-~Qa~~md~~ig~f~iP-----------ili~iPi~d  347 (348)
                      |++++.++||++++|+.|.+. .|.++||++++++++|           ++++.|+++
T Consensus       276 ~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~  333 (475)
T TIGR00924       276 VLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLA  333 (475)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHH
Confidence            999999999999999999654 5667899999999998           666666643

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.95  E-value=2.8e-27  Score=240.17  Aligned_cols=274  Identities=13%  Similarity=0.170  Sum_probs=201.4

Q ss_pred             hHHHHHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhh
Q 048319            2 AALLWADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLT   80 (348)
Q Consensus         2 ~~~e~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~   80 (348)
                      ++.|+|||++||++ ..+..|+++++|++.++++.+.+.+....+..++++|+++||++|||++++++.+++.+|+.++.
T Consensus        27 ~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~  106 (500)
T PRK09584         27 FSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVA  106 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence            56899999999999 99999999999999999999999999999999999999999988999999999999999998887


Q ss_pred             cccCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHH
Q 048319           81 MSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFM  160 (348)
Q Consensus        81 ~s~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~  160 (348)
                      ++..                     ....+++++.+.++|.|.++|+.+++++|+|+++++    ++   ++.++++|++
T Consensus       107 ~~~~---------------------~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~----~~---~~~~~~~~~~  158 (500)
T PRK09584        107 WSGH---------------------DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDP----RL---DGAFTMYYMS  158 (500)
T ss_pred             Hhcc---------------------cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCch----hh---hhcchHHHHH
Confidence            6421                     234567888899999999999999999999986543    24   6689999999


Q ss_pred             Hh---hhcchhhcccc---cchhhHHHHHHHHHHHHHHHHhcCcccccC--CCCCCchhH------HHHHHHHHHhhcc-
Q 048319          161 VP---VAAIIPISYIK---PWNLRFGVSAICTVIATLLFLSGTCTYENK--EPEGSPLTS------VFRVFVASTTKLF-  225 (348)
Q Consensus       161 in---~~~~~~~~yi~---g~~~~F~i~~~~~~i~~~vf~~g~~~y~~~--~p~gs~l~~------~~~V~~~a~~~~~-  225 (348)
                      +|   .+++.+.+++.   ||+++|.++++.++++++.++..++.++++  +|+++|...      ...+......... 
T Consensus       159 ~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (500)
T PRK09584        159 INIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWL  238 (500)
T ss_pred             HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHH
Confidence            99   77888888886   999999999999999998888776665543  343333221      1111111111100 


Q ss_pred             CCCCCCCcccccCCCCCCCCCCCCCCccccCCCCCchhhhhhhhCCCCCcccccCCcccccCcchhHHHHHhhhhhhHHH
Q 048319          226 YRLPSDASELYEGNDTDDSFSDSDDSSFVQPTCGLGCLEKAAVILPNGTIEQQETNRWRLCSVTEVEETKRLLRMIPICL  305 (348)
Q Consensus       226 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ld~a~~~~~~~~~~~~~~~~w~~~~~~~Vee~k~~l~~lpif~  305 (348)
                      ...++.    .                   + ....+........          ...+.+..++ +|+|+.+..+++++
T Consensus       239 ~~~~~~----~-------------------~-~~~~~~~~~~~~~----------~~~~~~~~~~-~~~~~~~~~~~~~~  283 (500)
T PRK09584        239 LHNQEI----A-------------------R-MALGVVALGIVVI----------FGKEAFAMKG-AARRKMIVAFILML  283 (500)
T ss_pred             HhcchH----H-------------------H-HHHHHHHHHHHHH----------HHHHHhhcCH-HHHHHHHHHHHHHH
Confidence            000000    0                   0 0000000000000          0000012233 46778888899999


Q ss_pred             HHHHHHHhhcccchHHHHHHHH-hccCcCCeeee
Q 048319          306 TFIIPGVVSSIGNTYFVEQADL-LNKKVGNLKAT  338 (348)
Q Consensus       306 ~~ii~~~~~~Q~~t~~v~Qa~~-md~~ig~f~iP  338 (348)
                      ..++||+.+.|+++.+..|+.+ +|+++.++.+|
T Consensus       284 ~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~  317 (500)
T PRK09584        284 EAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVE  317 (500)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHhccccccceEEC
Confidence            9999999999999999999965 78888888887

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.16  E-value=5.5e-10  Score=105.99  Aligned_cols=158  Identities=19%  Similarity=0.209  Sum_probs=126.8

Q ss_pred             HHHHHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhc
Q 048319            3 ALLWADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTM   81 (348)
Q Consensus         3 ~~e~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~   81 (348)
                      +..+...++.... ..+..++.+++|.+..+.+.+.+.+.....+..+++|+++|| +||||.+.++.++..++..++.+
T Consensus         3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~   81 (352)
T PF07690_consen    3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDR-FGRRRVLIIGLLLFALGSLLLAF   81 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHH-S-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCeeeEeehhhhhhhHHHHhhh
Confidence            4456666666666 555548888999999999999999999999999999999999 59999999999999999555544


Q ss_pred             ccCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHH
Q 048319           82 STPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMV  161 (348)
Q Consensus        82 s~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~i  161 (348)
                      +  +                    +.+.++++..+.++|.|...|...++..|.+++++      |   .+.++++..+.
T Consensus        82 ~--~--------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~---~~~~~~~~~~~  130 (352)
T PF07690_consen   82 A--S--------------------NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------R---GRAFGILSAGF  130 (352)
T ss_dssp             H--C--------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------H---HHHHHHHHHHH
T ss_pred             h--h--------------------hHHHHhhhccccccccccccccccccccccchhhh------h---hhccccccchh
Confidence            2  1                    23478888999999999999999999999998743      3   55677777777


Q ss_pred             h---hhcchhhcccc---cchhhHHHHHHHHHHHHHH
Q 048319          162 P---VAAIIPISYIK---PWNLRFGVSAICTVIATLL  192 (348)
Q Consensus       162 n---~~~~~~~~yi~---g~~~~F~i~~~~~~i~~~v  192 (348)
                      +   .+++.+.+++.   ||++.|.+.++..+++.++
T Consensus       131 ~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il  167 (352)
T PF07690_consen  131 SLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAIL  167 (352)
T ss_dssp             HHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHH
T ss_pred             hhhhhcccchhhhhhhccccccccccccchhhhhhhh
Confidence            7   66766666654   8999999999988888764

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10054 putative transporter; Provisional

Probab=99.14  E-value=9.3e-10  Score=108.40  Aligned_cols=157  Identities=18%  Similarity=0.185  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcc
Q 048319            4 LLWADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMS   82 (348)
Q Consensus         4 ~e~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s   82 (348)
                      ..++-.++++.+ ..+..|+++.+|++..+.+.+.+.+.....+..+++|+++|| +|||+.+.++.++..++.+++..+
T Consensus        15 ~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~k~~~~~~~~~~~~~~~~~~~~   93 (395)
T PRK10054         15 SSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADK-FDKKRYMLLAITAFASGFIAIPLV   93 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcchhHHHHHHHHHHHHHHHHHH
Confidence            456677888888 888999999999999999999999988888899999999999 599999999999988888776654


Q ss_pred             cCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh
Q 048319           83 TPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP  162 (348)
Q Consensus        83 ~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in  162 (348)
                      .                      +...+++...+.+.+.+...|...+..+|.++++      ++   .+.+++.+...|
T Consensus        94 ~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~---~~~~g~~~~~~~  142 (395)
T PRK10054         94 N----------------------NVTLVVLFFALINCAYSVFSTVLKAWFADNLSST------SK---TKIFSLNYTMLN  142 (395)
T ss_pred             h----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHh------HH---HHHHHHHHHHHH
Confidence            1                      2334444555666666677777888778776533      24   668899999888


Q ss_pred             ---hhcchhhcccc--cchhhHHHHHHHHHHHHHH
Q 048319          163 ---VAAIIPISYIK--PWNLRFGVSAICTVIATLL  192 (348)
Q Consensus       163 ---~~~~~~~~yi~--g~~~~F~i~~~~~~i~~~v  192 (348)
                         .+++.+.+++.  ||+..|.+.++..+++.+.
T Consensus       143 lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~  177 (395)
T PRK10054        143 IGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVF  177 (395)
T ss_pred             HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence               66666666654  9999999888777776543

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.11  E-value=2.3e-09  Score=105.79  Aligned_cols=159  Identities=14%  Similarity=0.102  Sum_probs=128.3

Q ss_pred             HHHHHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhc
Q 048319            3 ALLWADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTM   81 (348)
Q Consensus         3 ~~e~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~   81 (348)
                      ...++-+++++.+ ..+..|+++++|++..+.+.+...+.....+..+++|+++|| +|||+++.++.++..++.+++..
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr-~g~k~~l~~~~~~~~~~~~~~~~   95 (400)
T PRK11646         17 IDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADR-FGAKPMIVTGMLMRAAGFATMAI   95 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHH-hCchHHHHHHHHHHHHHHHHHHH
Confidence            3456778899988 888999999999999999999999988889999999999999 59999999999999999887765


Q ss_pred             ccCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHH
Q 048319           82 STPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMV  161 (348)
Q Consensus        82 s~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~i  161 (348)
                      +.                      +.+.+++...+.+++.|...|...+...|.+++++      +   .+.+++++...
T Consensus        96 ~~----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~---~~a~~~~~~~~  144 (400)
T PRK11646         96 AH----------------------EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------R---GRFFSLLMMQD  144 (400)
T ss_pred             hc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------H---HHHHHHHHHHH
Confidence            31                      24567777888899998899998888887765322      4   66788888887


Q ss_pred             h---hhcchhhcccc--cchhhHHHHHHHHHHHHHHH
Q 048319          162 P---VAAIIPISYIK--PWNLRFGVSAICTVIATLLF  193 (348)
Q Consensus       162 n---~~~~~~~~yi~--g~~~~F~i~~~~~~i~~~vf  193 (348)
                      +   .+++.+.+++.  ||++.|.+.++..+++.++.
T Consensus       145 ~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~  181 (400)
T PRK11646        145 SAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFN  181 (400)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            7   66666666554  99999998877766554443

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.10  E-value=1.7e-10  Score=113.72  Aligned_cols=141  Identities=16%  Similarity=0.242  Sum_probs=119.7

Q ss_pred             hhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCCccc
Q 048319           23 TEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECI  102 (348)
Q Consensus        23 ~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~~c~  102 (348)
                      ++.+|.+....+.+-.+|...-.+...+.|+++||| -|++.+.+|..+..+..+.-..+                    
T Consensus        60 ~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~iW~~Av~~~~fs--------------------  118 (493)
T KOG1330|consen   60 QTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIFIWTLAVFASGFS--------------------  118 (493)
T ss_pred             HHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHHHHHHHHHHHHHH--------------------
Confidence            346899999999999999999999999999999997 99999999999999887765543                    


Q ss_pred             ccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhcccc----cc
Q 048319          103 VKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYIK----PW  175 (348)
Q Consensus       103 ~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi~----g~  175 (348)
                        .+.+.+.+...++++|...+-|..+++++|.|+++.      |   .+.|.||||+++   .+|.++-+++.    .|
T Consensus       119 --~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------R---s~~~~ify~~ipvGsglG~vvgs~va~~~~~W  187 (493)
T KOG1330|consen  119 --NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------R---SRVLGIFYFAIPVGSGLGYVVGSVVASLTFWW  187 (493)
T ss_pred             --HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------h---hHHHHHhhhhcccccceeEEeeeeeccCccce
Confidence              256788888999999999999999999999999764      5   889999999999   77777777776    49


Q ss_pred             hhhHHHHHHHHHHHH-HHHHh
Q 048319          176 NLRFGVSAICTVIAT-LLFLS  195 (348)
Q Consensus       176 ~~~F~i~~~~~~i~~-~vf~~  195 (348)
                      +++|.+.++.+++.. ++|++
T Consensus       188 r~af~~~avl~vi~~~L~~~f  208 (493)
T KOG1330|consen  188 RWAFRGSAVLGVIVGLLVFLF  208 (493)
T ss_pred             EEEEEeehHHHHHHHHHHHhh
Confidence            999998887776544 44443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.09  E-value=3.5e-09  Score=100.80  Aligned_cols=163  Identities=12%  Similarity=-0.019  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcc
Q 048319            4 LLWADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMS   82 (348)
Q Consensus         4 ~e~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s   82 (348)
                      ..+...++.... ..+..|.. +++.+..+.+.+...+.....+..++.|+++||+ ||||++.++.++..++..++...
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~   84 (365)
T TIGR00900         7 AQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAVLPFV   84 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555 55556665 4899999999999999999999999999999995 99999999999988887776654


Q ss_pred             cCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh
Q 048319           83 TPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP  162 (348)
Q Consensus        83 ~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in  162 (348)
                      ...                 ...+.+.++++..+.+++.|...|...++.+|.+++++      |   .+.++++..+.+
T Consensus        85 ~~~-----------------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~~~~  138 (365)
T TIGR00900        85 ALL-----------------GGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------L---TQANSLSQAVRS  138 (365)
T ss_pred             HHc-----------------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------H---HHHHhHHHHHHH
Confidence            310                 01245778888889999999999999999999887542      3   567777777766


Q ss_pred             ---hhcchhhcccc---cchhhHHHHHHHHHHHHHHHH
Q 048319          163 ---VAAIIPISYIK---PWNLRFGVSAICTVIATLLFL  194 (348)
Q Consensus       163 ---~~~~~~~~yi~---g~~~~F~i~~~~~~i~~~vf~  194 (348)
                         .+++.+..++-   ||++.|.+.++..+++.+...
T Consensus       139 ~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  176 (365)
T TIGR00900       139 LFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIV  176 (365)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence               66665555543   999999988777666654433

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.02  E-value=1.2e-08  Score=101.25  Aligned_cols=157  Identities=15%  Similarity=0.164  Sum_probs=114.6

Q ss_pred             HHHHHHHHhH-HHHHHHh--------hhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhh
Q 048319            6 WADCLAQFVM-WTMMEYL--------TEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGI   76 (348)
Q Consensus         6 ~~Er~a~yg~-~~L~~Yl--------~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~   76 (348)
                      ++--+.+|+. ..+...+        .+.+|.+.+.++..++.|....-+..+++|+++|| +||||++..+..+..++.
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~   95 (413)
T PRK15403         17 FPMALILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDR-IGRRPVLITGALIFTLAC   95 (413)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHH-cCchHHHHHHHHHHHHHH
Confidence            4444566666 5554433        34689999999999999998888899999999999 599999999999999988


Q ss_pred             hhhhcccCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHH
Q 048319           77 GLLTMSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKL  156 (348)
Q Consensus        77 ~ll~~s~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~  156 (348)
                      ++...+.                      +...++++..+.++|.|..-+...+...|.+++++      +   .+...+
T Consensus        96 ~~~~~a~----------------------~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~  144 (413)
T PRK15403         96 AATLFTT----------------------SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------G---IKLMAI  144 (413)
T ss_pred             HHHHHcC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------H---HHHHHH
Confidence            7766541                      34667888888899888665555566777766432      2   445666


Q ss_pred             HHHHHh---hhcchhhcccc---cchhhHHHHHHHHHHHHHHHH
Q 048319          157 LLFMVP---VAAIIPISYIK---PWNLRFGVSAICTVIATLLFL  194 (348)
Q Consensus       157 ~y~~in---~~~~~~~~yi~---g~~~~F~i~~~~~~i~~~vf~  194 (348)
                      +....+   .+++.+..++.   ||++.|.+.++..+++.+..+
T Consensus       145 ~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~  188 (413)
T PRK15403        145 ITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLL  188 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            666665   55655555543   999999988877666655433

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.01  E-value=1.1e-08  Score=96.37  Aligned_cols=159  Identities=18%  Similarity=0.163  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhc
Q 048319            3 ALLWADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTM   81 (348)
Q Consensus         3 ~~e~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~   81 (348)
                      ...+.+.++++.. ..+..|. +.+|.+..+.+.+...+.....+..++.|+++|| +||||++.++.++..++.+++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~-~g~r~~~~~~~~~~~~~~~~~~~   83 (352)
T cd06174           6 LGFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR-FGRRRVLLLGLLLFALGSLLLAF   83 (352)
T ss_pred             HHHHHHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCCchhhHHHHHHHHHHHHHHHH
Confidence            4567888888888 6666665 4679999999999999999999999999999999 59999999999999999988776


Q ss_pred             ccCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHH
Q 048319           82 STPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMV  161 (348)
Q Consensus        82 s~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~i  161 (348)
                      ..                      +...++++..+.+++.|...|...++..|.+++++      |   ...+++.+...
T Consensus        84 ~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~~~  132 (352)
T cd06174          84 AS----------------------SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------R---GRALGLFSAGF  132 (352)
T ss_pred             hc----------------------cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------h---hhhhhHHHHHH
Confidence            41                      24677888889999999999999999999887632      3   55677777776


Q ss_pred             h---hhcchhhcccc---cchhhHHHHHHHHHHHHHHHH
Q 048319          162 P---VAAIIPISYIK---PWNLRFGVSAICTVIATLLFL  194 (348)
Q Consensus       162 n---~~~~~~~~yi~---g~~~~F~i~~~~~~i~~~vf~  194 (348)
                      +   .+++.+..++.   +|+..|.+.++..+++.++..
T Consensus       133 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (352)
T cd06174         133 GLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLL  171 (352)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            6   56665655554   799999988877776665443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.99  E-value=1e-08  Score=107.46  Aligned_cols=247  Identities=9%  Similarity=-0.078  Sum_probs=178.2

Q ss_pred             hhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCCccccc
Q 048319           25 VWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECIVK  104 (348)
Q Consensus        25 ~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~~c~~~  104 (348)
                      -.+...-.++...+.+...+++.++.+.+.||-..|++.++..-.+.++++.+.+.+.+.+.. |             ..
T Consensus        14 l~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~-~-------------~~   79 (654)
T TIGR00926        14 FLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI-P-------------SS   79 (654)
T ss_pred             HHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC-c-------------cc
Confidence            345556678899999999999999999999999999999999999999999999988765432 1             23


Q ss_pred             chhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHhhhcchhh--cccccchh-----
Q 048319          105 GHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVPVAAIIPI--SYIKPWNL-----  177 (348)
Q Consensus       105 ~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in~~~~~~~--~yi~g~~~-----  177 (348)
                      .+.....++++.++++.+|.+++.+.+.++|.|.-++   +++   ++.+++|||..+.......  +.+.+|--     
T Consensus        80 ~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~---~~~---~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~  153 (654)
T TIGR00926        80 GHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEE---RQL---SLRSRFFSFFYFAINAGSLISTIITPILRGDVGC  153 (654)
T ss_pred             ccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCc---cch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            3345567788999999999999999999999998653   556   7899999999986664321  12225543     


Q ss_pred             ------hHHHHHHHHHHHHHHHHhcCcccccCCCCCCchhHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCCCCCCCC
Q 048319          178 ------RFGVSAICTVIATLLFLSGTCTYENKEPEGSPLTSVFRVFVASTTKLFYRLPSDASELYEGNDTDDSFSDSDDS  251 (348)
Q Consensus       178 ------~F~i~~~~~~i~~~vf~~g~~~y~~~~p~gs~l~~~~~V~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  251 (348)
                            -++..++.+++.++.++.....++..+|.+.+...+.+++..+...++.+                        
T Consensus       154 fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~------------------------  209 (654)
T TIGR00926       154 FGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKR------------------------  209 (654)
T ss_pred             cccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHh------------------------
Confidence                  12255666666667777776666666665554444555544433322110                        


Q ss_pred             ccccCCCCCchhhhhhhhCCCCCcccccCCcccc--cCcchhHHHHHhhhhhhHHHHHHHHHHhhcccchHHHHHHHHhc
Q 048319          252 SFVQPTCGLGCLEKAAVILPNGTIEQQETNRWRL--CSVTEVEETKRLLRMIPICLTFIIPGVVSSIGNTYFVEQADLLN  329 (348)
Q Consensus       252 ~~l~~~~~~~~ld~a~~~~~~~~~~~~~~~~w~~--~~~~~Vee~k~~l~~lpif~~~ii~~~~~~Q~~t~~v~Qa~~md  329 (348)
                        ..+ ...+                 ....|..  +....+++++.+.|+++++...+.+|+.+.|....+..|..+|+
T Consensus       210 --~~~-~~~~-----------------~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~  269 (654)
T TIGR00926       210 --FST-RSEH-----------------WPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQAT  269 (654)
T ss_pred             --hcc-CCcc-----------------cchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence              000 0000                 0122322  24455678999999999999999999999999999999999999


Q ss_pred             cCcCCe
Q 048319          330 KKVGNL  335 (348)
Q Consensus       330 ~~ig~f  335 (348)
                      +..+++
T Consensus       270 ~m~~~l  275 (654)
T TIGR00926       270 RMDGDV  275 (654)
T ss_pred             HhcCcc
Confidence            987654

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.99  E-value=1.7e-08  Score=97.79  Aligned_cols=157  Identities=15%  Similarity=0.108  Sum_probs=118.5

Q ss_pred             HHHHHHHHHHHhHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcc
Q 048319            3 ALLWADCLAQFVMWTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMS   82 (348)
Q Consensus         3 ~~e~~Er~a~yg~~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s   82 (348)
                      +..+.+.+..+-+......+.+++|.+.++.+.+.+.+.....+..++.|+++||+ |||+.+.++.++..++.+++..+
T Consensus        19 ~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~   97 (405)
T TIGR00891        19 LGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTSIVLFSAGTLACGFA   97 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHh
Confidence            34556666666555556677888999999999999999999999999999999995 99999999999999988776653


Q ss_pred             cCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh
Q 048319           83 TPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP  162 (348)
Q Consensus        83 ~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in  162 (348)
                      .                      +...++++..+.++|.|+..|...++..|.+++++      |   .+...++....+
T Consensus        98 ~----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~---~~~~~~~~~~~~  146 (405)
T TIGR00891        98 P----------------------GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------R---NKASGLLISGYA  146 (405)
T ss_pred             c----------------------cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------h---hHHHHHHHHHHH
Confidence            1                      24667788889999999999999999998886532      3   456666666555


Q ss_pred             ---hhcchhhccc-c----cchhhHHHHHHHHHHHHH
Q 048319          163 ---VAAIIPISYI-K----PWNLRFGVSAICTVIATL  191 (348)
Q Consensus       163 ---~~~~~~~~yi-~----g~~~~F~i~~~~~~i~~~  191 (348)
                         .+++.+...+ +    +|++.|.+.++..++..+
T Consensus       147 ~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~  183 (405)
T TIGR00891       147 VGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALW  183 (405)
T ss_pred             HHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence               4444444433 2    499999886665554443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.98  E-value=1.9e-08  Score=98.44  Aligned_cols=156  Identities=12%  Similarity=0.016  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHhHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhccc
Q 048319            4 LLWADCLAQFVMWTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMST   83 (348)
Q Consensus         4 ~e~~Er~a~yg~~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~   83 (348)
                      ..++|-+..+........+.+++|.+..+.+.+.+.+.....+..++.|+++|| +||||++..+.++..++.+++....
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~  101 (406)
T PRK11551         23 VALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADR-IGRKRILIVSVALFGLFSLATAQAW  101 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHHHHhc
Confidence            344555555555333455667899999999999999999999999999999999 5999999999998888876665531


Q ss_pred             CCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh-
Q 048319           84 PPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP-  162 (348)
Q Consensus        84 ~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in-  162 (348)
                                            +...++++..+.++|.|...|...+..+|.+++++      |   .+..++++...+ 
T Consensus       102 ----------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r---~~~~~~~~~~~~~  150 (406)
T PRK11551        102 ----------------------DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------R---GTAVSLMYCGVPF  150 (406)
T ss_pred             ----------------------cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------H---HHHHHHHHHHHHH
Confidence                                  24567778888999999999999999998886432      3   567777777776 


Q ss_pred             --hhcchhhcccc---cchhhHHHHHHHHHHHHH
Q 048319          163 --VAAIIPISYIK---PWNLRFGVSAICTVIATL  191 (348)
Q Consensus       163 --~~~~~~~~yi~---g~~~~F~i~~~~~~i~~~  191 (348)
                        .+++.+..++.   +|+..|.+.++..++..+
T Consensus       151 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (406)
T PRK11551        151 GGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVP  184 (406)
T ss_pred             HHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHH
Confidence              55554443333   899999987766555444

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.97  E-value=1.1e-08  Score=98.87  Aligned_cols=144  Identities=12%  Similarity=0.136  Sum_probs=111.3

Q ss_pred             HHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCC
Q 048319           19 MEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYK   98 (348)
Q Consensus        19 ~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~   98 (348)
                      ...+.+.+|.+..+++.+.+.+.....+..+++|+++|| +|||+.+.++.++..++..++..+.               
T Consensus        14 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~i~~~~~~~~~---------------   77 (377)
T PRK11102         14 LPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADS-FGRKPVILGGTLVFALAAVACALAQ---------------   77 (377)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhh-cCChHHHHHHHHHHHHHHHHHHHHc---------------
Confidence            334445799999999999999999999999999999999 5999999999999999988876541               


Q ss_pred             CcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhcccc--
Q 048319           99 PECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYIK--  173 (348)
Q Consensus        99 ~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi~--  173 (348)
                             +...+++...+.+++.|...+...++..|.+++++      |   .+.+++++...+   .+++.+..++.  
T Consensus        78 -------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~~~~~g~~~~~~~~~~l~~~  141 (377)
T PRK11102         78 -------TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------F---SRMMSFVTLVMTIAPLLAPIIGGWLLVW  141 (377)
T ss_pred             -------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   24566777888899999999999999998876432      3   556777776655   55665555443  


Q ss_pred             -cchhhHHHHHHHHHHHHHHHH
Q 048319          174 -PWNLRFGVSAICTVIATLLFL  194 (348)
Q Consensus       174 -g~~~~F~i~~~~~~i~~~vf~  194 (348)
                       ||++.|.+.++..++..+...
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~  163 (377)
T PRK11102        142 FSWHAIFWVLALAAILAAALVF  163 (377)
T ss_pred             cChHHHHHHHHHHHHHHHHHHH
Confidence             999999987776666554433

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.97  E-value=2.3e-08  Score=96.41  Aligned_cols=147  Identities=14%  Similarity=0.117  Sum_probs=114.7

Q ss_pred             HHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCC
Q 048319           18 MMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEY   97 (348)
Q Consensus        18 L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~   97 (348)
                      ...++.+++|.+..+.+.+.+.+.....+..+++|+++|| +||||.+..+.++..++.+++..+.              
T Consensus        27 ~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~~--------------   91 (385)
T TIGR00710        27 AFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDR-YGRRPVLLLGLFIFALSSLGLALSN--------------   91 (385)
T ss_pred             cHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHHHHHHHHHHHHHc--------------
Confidence            3455677899999999999999999999999999999999 5999999999999999888776531              


Q ss_pred             CCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhcccc-
Q 048319           98 KPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYIK-  173 (348)
Q Consensus        98 ~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi~-  173 (348)
                              +...++++..+.++|.|..-+...++..|.+++++      |   .+.+.+++...+   .+++.+.+++- 
T Consensus        92 --------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~~~~~g~~~g~~~~~~l~~  154 (385)
T TIGR00710        92 --------NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------L---SRIYSILMPVLALAPAVAPLLGGYILV  154 (385)
T ss_pred             --------cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------H---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    24567778889999999999999999998876432      3   556777666656   55555555543 


Q ss_pred             --cchhhHHHHHHHHHHHHHHHHhc
Q 048319          174 --PWNLRFGVSAICTVIATLLFLSG  196 (348)
Q Consensus       174 --g~~~~F~i~~~~~~i~~~vf~~g  196 (348)
                        ||+..|.+.++..++..+.....
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~  179 (385)
T TIGR00710       155 WLSWHAIFAFLSLAGILLSALIFFI  179 (385)
T ss_pred             HcCHHHHHHHHHHHHHHHHHHHHHh
Confidence              99999998777766665554443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.95  E-value=3.2e-08  Score=97.18  Aligned_cols=143  Identities=11%  Similarity=0.031  Sum_probs=107.2

Q ss_pred             HHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCC
Q 048319           20 EYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKP   99 (348)
Q Consensus        20 ~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~   99 (348)
                      ..+.+++|.+..+.+...+.+.....+..++.|+++||+ ||||.+.++..+..++.+++..+.                
T Consensus        37 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~----------------   99 (406)
T PRK15402         37 LAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAFFILTCLAILLAQ----------------   99 (406)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHc----------------
Confidence            345578999999999999999888889999999999995 999999999999888887765531                


Q ss_pred             cccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhcccc---
Q 048319          100 ECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYIK---  173 (348)
Q Consensus       100 ~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi~---  173 (348)
                            +...+++...+.+++.|..-|...+...|.+++++      +   .+..++.+...+   .+++.+.+++.   
T Consensus       100 ------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~---~~~~~~~~~~~~~~~~~g~~i~~~l~~~~  164 (406)
T PRK15402        100 ------SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------A---IKITALMANVALLAPLLGPLVGAALIHVL  164 (406)
T ss_pred             ------cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence                  24566777788889988888888888888876432      2   334555444433   55555555543   


Q ss_pred             cchhhHHHHHHHHHHHHHHHH
Q 048319          174 PWNLRFGVSAICTVIATLLFL  194 (348)
Q Consensus       174 g~~~~F~i~~~~~~i~~~vf~  194 (348)
                      ||++.|.+.++..+++.+...
T Consensus       165 ~w~~~~~~~~~~~~~~~~~~~  185 (406)
T PRK15402        165 PWRGMFVLFAALAALSFFGLW  185 (406)
T ss_pred             CccHHHHHHHHHHHHHHHHHH
Confidence            999999987777776655443

>PRK03545 putative arabinose transporter; Provisional

Probab=98.95  E-value=1.6e-08  Score=98.85  Aligned_cols=145  Identities=14%  Similarity=0.173  Sum_probs=111.5

Q ss_pred             HHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCC
Q 048319           18 MMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEY   97 (348)
Q Consensus        18 L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~   97 (348)
                      +...+.+++|.+..+.+.+.+.+.....+..++.|+++|| +||||.+..+.++..++.++...+.              
T Consensus        31 ~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~--------------   95 (390)
T PRK03545         31 LLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSN-VERRKLLIGLFVLFIASHVLSALAW--------------   95 (390)
T ss_pred             chHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHHHHHhc--------------
Confidence            3456677899999999999999988888888889999999 5999999999999999987766541              


Q ss_pred             CCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhccc-c
Q 048319           98 KPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYI-K  173 (348)
Q Consensus        98 ~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi-~  173 (348)
                              +...++++..+.+++.|..-|...++..|.+++++      |   .+..+++....+   .+++.+..++ +
T Consensus        96 --------~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r---~~~~g~~~~~~~~g~~ig~~l~~~l~~  158 (390)
T PRK03545         96 --------NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------K---AQALSLLATGTALAMVLGLPLGRVIGQ  158 (390)
T ss_pred             --------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------h---hhHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence                    34667777788999998888888899998876432      3   456666666555   5555555544 3


Q ss_pred             --cchhhHHHHHHHHHHHHHHHH
Q 048319          174 --PWNLRFGVSAICTVIATLLFL  194 (348)
Q Consensus       174 --g~~~~F~i~~~~~~i~~~vf~  194 (348)
                        ||++.|.+.++..++..+...
T Consensus       159 ~~gw~~~f~~~~~~~~l~~~~~~  181 (390)
T PRK03545        159 YLGWRTTFLAIGGGALITLLLLI  181 (390)
T ss_pred             HhcHHHHHHHHHHHHHHHHHHHH
Confidence              999999998876665544433

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.95  E-value=9e-09  Score=98.35  Aligned_cols=146  Identities=16%  Similarity=0.146  Sum_probs=115.8

Q ss_pred             HHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCC
Q 048319           17 TMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSE   96 (348)
Q Consensus        17 ~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~   96 (348)
                      ....++.+++|.+..+.+.+.+.+.....+..+++|+++|| +|||+++.++.++..++..++..+.             
T Consensus        15 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~~-------------   80 (399)
T TIGR00893        15 FAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDR-FGARKTLAVFIVIWGVFTGLQAFAG-------------   80 (399)
T ss_pred             HhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHh-cCcceeeHHHHHHHHHHHHHHHHHc-------------
Confidence            34455778899999999999999999999999999999999 5999999999999999888776641             


Q ss_pred             CCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhccc-
Q 048319           97 YKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYI-  172 (348)
Q Consensus        97 ~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi-  172 (348)
                               +...++++..+.++|.|..-|...++..|.+++++      |   .+.++++....+   .+++.+..++ 
T Consensus        81 ---------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r---~~~~~~~~~~~~~g~~~~~~~~~~l~  142 (399)
T TIGR00893        81 ---------AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------R---ATAVSIFNSAQGLGGIIGGPLVGWIL  142 (399)
T ss_pred             ---------CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------H---HHHHHHHHHhchHHHHHHHHHHHHHH
Confidence                     35678888899999999999999999998876432      3   556777766666   5665555543 


Q ss_pred             c--cchhhHHHHHHHHHHHHHHHH
Q 048319          173 K--PWNLRFGVSAICTVIATLLFL  194 (348)
Q Consensus       173 ~--g~~~~F~i~~~~~~i~~~vf~  194 (348)
                      +  ||++.|.+.++..++..++..
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~  166 (399)
T TIGR00893       143 IHFSWQWAFIIEGVLGIIWGVLWL  166 (399)
T ss_pred             HhCCchHHHHHHHHHHHHHHHHhh
Confidence            3  999999988776665554443

>PRK12382 putative transporter; Provisional

Probab=98.94  E-value=2.6e-08  Score=97.22  Aligned_cols=147  Identities=11%  Similarity=-0.046  Sum_probs=107.2

Q ss_pred             HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccC-CccCCCCCCC
Q 048319           16 WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTP-PVLAGFVGTC   94 (348)
Q Consensus        16 ~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~-p~~~~~~~~c   94 (348)
                      ..+..|+.+++|.+..+.+.+.+.+.....+..+++|+++|| +||||.+..+.++..++.+...+... +...      
T Consensus        36 p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~------  108 (392)
T PRK12382         36 PVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQ-YGAKRSALQGMLACGLAGLAYLLAAILPVSA------  108 (392)
T ss_pred             hhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHh-hcchHHHHHHHHHHHHHHHHHHhhhccccch------
Confidence            445568888999999999999999999999999999999999 59999999998887776544333222 1100      


Q ss_pred             CCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhcc
Q 048319           95 SEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISY  171 (348)
Q Consensus        95 ~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~y  171 (348)
                               ..+...++++..+.++|.+..-|...+.+.|.++++   |   |   .+..+++..+.+   .+++.+..+
T Consensus       109 ---------~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~---~---r---~~a~~~~~~~~~~g~~~g~~~~~~  170 (392)
T PRK12382        109 ---------PFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPK---H---S---GKVMSWNGMAMYGALAAGAPLGLL  170 (392)
T ss_pred             ---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc---c---c---chhhhHHHHHHHHHHHHHHHHHHH
Confidence                     123566778888999999988888888888776532   1   3   556777777666   566666555


Q ss_pred             cc---cchhhHHHHHHHHH
Q 048319          172 IK---PWNLRFGVSAICTV  187 (348)
Q Consensus       172 i~---g~~~~F~i~~~~~~  187 (348)
                      +.   ||+..+.+..+..+
T Consensus       171 l~~~~g~~~~~~~~~~~~~  189 (392)
T PRK12382        171 LHSHFGFAALALTTMVLPL  189 (392)
T ss_pred             HHhccChHHHHHHHHHHHH
Confidence            53   89887776554433

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.93  E-value=2e-08  Score=99.56  Aligned_cols=146  Identities=12%  Similarity=0.100  Sum_probs=110.7

Q ss_pred             HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCC
Q 048319           16 WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCS   95 (348)
Q Consensus        16 ~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~   95 (348)
                      +....++++++|++..+.+.+.+.+....-+..+++|+++|| +||||.+..+.+++.++.++..++.            
T Consensus        28 ~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~~~~~~~~~~~~~~------------   94 (412)
T TIGR02332        28 GFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAI-IGARRWIAGIMVLWGIASTATMFAT------------   94 (412)
T ss_pred             HHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHhc------------
Confidence            344557888999999999999999999999999999999999 5999999999999999988877641            


Q ss_pred             CCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhccc
Q 048319           96 EYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYI  172 (348)
Q Consensus        96 ~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi  172 (348)
                                +...++++..+.++|.|+.-|....+.+|-++++.      |   .....++....+   .+++.+.+++
T Consensus        95 ----------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r---g~~~~~~~~~~~~g~~~~~~~~~~l  155 (412)
T TIGR02332        95 ----------GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------R---ARANALFMIAMPVTMALGLILSGYI  155 (412)
T ss_pred             ----------CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------H---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      24567788889999999998888888887776432      2   344555555544   4444443332


Q ss_pred             -------c--cchhhHHHHHHHHHHHHHHH
Q 048319          173 -------K--PWNLRFGVSAICTVIATLLF  193 (348)
Q Consensus       173 -------~--g~~~~F~i~~~~~~i~~~vf  193 (348)
                             +  ||++.|.+.++..++..++.
T Consensus       156 ~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~  185 (412)
T TIGR02332       156 LALDGLMALKGWQWLFLLEGFPSVILGVMT  185 (412)
T ss_pred             HhCCCCCCccchhHHHHHHHHHHHHHHHHH
Confidence                   2  99999999776665444333

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.93  E-value=1.6e-08  Score=101.13  Aligned_cols=147  Identities=10%  Similarity=0.047  Sum_probs=116.2

Q ss_pred             HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCC
Q 048319           16 WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCS   95 (348)
Q Consensus        16 ~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~   95 (348)
                      .....++.+++|.+..+.+.+.+.+.....+..+++|+++||+ ||||.+.++.+++.++.++...+.            
T Consensus        22 ~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~------------   88 (485)
T TIGR00711        22 NVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLGSLLCGVAP------------   88 (485)
T ss_pred             HHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHHHHHHhCcC------------
Confidence            4455667778999999999999999999999999999999994 999999999999999988776541            


Q ss_pred             CCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhccc
Q 048319           96 EYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYI  172 (348)
Q Consensus        96 ~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi  172 (348)
                                +...++++..+.++|.|...|...++..|.+++++      |   .+.+.++....+   .+++.+.+++
T Consensus        89 ----------~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r---~~~~~~~~~~~~~g~~~g~~~~~~l  149 (485)
T TIGR00711        89 ----------NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------R---GRAMAIWGLTVLVAPALGPTLGGWI  149 (485)
T ss_pred             ----------CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------H---HHHHHHHHHHHHHHhhhhhccHhHh
Confidence                      24667788889999999999999999998886432      3   556777666665   6666666655


Q ss_pred             c---cchhhHHHHHHHHHHHHHHHH
Q 048319          173 K---PWNLRFGVSAICTVIATLLFL  194 (348)
Q Consensus       173 ~---g~~~~F~i~~~~~~i~~~vf~  194 (348)
                      .   ||++.|.+.+...+++.++..
T Consensus       150 ~~~~~w~~~f~~~~~~~~~~~~~~~  174 (485)
T TIGR00711       150 IENYHWRWIFLINVPIGIIVVVVAF  174 (485)
T ss_pred             ccCcCceehhhhhhHHHHHHHHHHH
Confidence            3   999999987665555544333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00895 2A0115 benzoate transport

Probab=98.91  E-value=2.8e-08  Score=95.71  Aligned_cols=144  Identities=15%  Similarity=0.104  Sum_probs=111.2

Q ss_pred             HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCC
Q 048319           16 WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCS   95 (348)
Q Consensus        16 ~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~   95 (348)
                      .....++.+.+|.+..+++.+...+.....+..+++|+++|| +|||+++.++.++..++.+++....            
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~------------  103 (398)
T TIGR00895        37 GFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADR-IGRKRVLLWSILLFSVFTLLCALAT------------  103 (398)
T ss_pred             HhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHcc------------
Confidence            445566677899999999999999888888999999999999 5999999999999888887766531            


Q ss_pred             CCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhccc
Q 048319           96 EYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYI  172 (348)
Q Consensus        96 ~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi  172 (348)
                                +...++++..+.++|.|..-|...++.+|.++++.      |   .+.++++..+.+   .+++.+.+++
T Consensus       104 ----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r---~~~~~~~~~~~~~g~~~~~~~~~~l  164 (398)
T TIGR00895       104 ----------NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------R---GTAVGLMFCGYPIGAAVGGFLAGWL  164 (398)
T ss_pred             ----------chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------h---chhHhhHhhHHHHHHHHHHHHHHHH
Confidence                      24567788889999999999999999999886432      3   456666666555   5666565555


Q ss_pred             c---cchhhHHHHHHHHHHHHH
Q 048319          173 K---PWNLRFGVSAICTVIATL  191 (348)
Q Consensus       173 ~---g~~~~F~i~~~~~~i~~~  191 (348)
                      .   ||+..|.+.++..++..+
T Consensus       165 ~~~~g~~~~~~~~~~~~~~~~~  186 (398)
T TIGR00895       165 IPVFGWRSLFYVGGIAPLLLLL  186 (398)
T ss_pred             hhcccceeehhhhhhHHHHHHH
Confidence            3   999999987644444433

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.91  E-value=1.1e-08  Score=97.86  Aligned_cols=146  Identities=14%  Similarity=0.074  Sum_probs=112.8

Q ss_pred             HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCC
Q 048319           16 WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCS   95 (348)
Q Consensus        16 ~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~   95 (348)
                      .....++.+.+|++..+.+.+.+.+.....+..+++|+++||+ |||+.+.++.++..++.+++..+.            
T Consensus        15 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~------------   81 (379)
T TIGR00881        15 ALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFST------------   81 (379)
T ss_pred             hhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHhh------------
Confidence            4456778889999999999999999999999999999999995 999999999999999988877641            


Q ss_pred             CCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcc-hhhcc
Q 048319           96 EYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAI-IPISY  171 (348)
Q Consensus        96 ~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~-~~~~y  171 (348)
                                +...++++..+.+++.|..-|...++..|.+++++      |   .+.++++..+.+   .+++ .+...
T Consensus        82 ----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r---~~~~~~~~~~~~~g~~~~~~~~~~~  142 (379)
T TIGR00881        82 ----------SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------R---GTWVSFWNCSHNVGGGLLPPLVLFG  142 (379)
T ss_pred             ----------hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------h---eeeEeehhccchhHHHHHHHHHHHH
Confidence                      34677788889999999999999999999887532      2   334555555544   4444 23333


Q ss_pred             c-c--cchhhHHHHHHHHHHHHHHH
Q 048319          172 I-K--PWNLRFGVSAICTVIATLLF  193 (348)
Q Consensus       172 i-~--g~~~~F~i~~~~~~i~~~vf  193 (348)
                      + +  ||++.|.+.++..++..++.
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~  167 (379)
T TIGR00881       143 IAELYSWHWVFIVPGIIAIIVSLIC  167 (379)
T ss_pred             HHhcCCchhHHHHHHHHHHHHHHHH
Confidence            3 2  99999998877666544433

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.89  E-value=5.3e-08  Score=93.50  Aligned_cols=123  Identities=11%  Similarity=0.062  Sum_probs=91.7

Q ss_pred             HHHHHHhHHHHHH-HhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCc
Q 048319            8 DCLAQFVMWTMME-YLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPV   86 (348)
Q Consensus         8 Er~a~yg~~~L~~-Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~   86 (348)
                      .-.+++....+.. |+.+.+|++..+++.+.+.+.....+.++++|+++||+ ||||++.++.++..++.+++..+.   
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~~~~~~~~~---   88 (366)
T TIGR00886        13 SFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIPCLWAGLAV---   88 (366)
T ss_pred             HHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHh---
Confidence            3334444434444 68899999999999999999999999999999999995 999999999999999988776641   


Q ss_pred             cCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh
Q 048319           87 LAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP  162 (348)
Q Consensus        87 ~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in  162 (348)
                                        .+...++++..+.+++.+.. +...+..+|.+++++      |   ....+++....|
T Consensus        89 ------------------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~------r---~~~~~~~~~~~~  136 (366)
T TIGR00886        89 ------------------QSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKI------Q---GTALGLAAGWGN  136 (366)
T ss_pred             ------------------hhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhh------h---hHHHHHHHHHhH
Confidence                              02456677777888886665 446678887775432      2   445556554444

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.89  E-value=4.5e-08  Score=99.32  Aligned_cols=143  Identities=14%  Similarity=0.079  Sum_probs=113.1

Q ss_pred             HHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCC
Q 048319           20 EYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKP   99 (348)
Q Consensus        20 ~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~   99 (348)
                      ..+.+++|.+..+.+.+.+.|........+++|+++|| +|||+.+.++.++..+|.++...+.                
T Consensus        30 p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~-~Grk~~l~~~~~~~~~~~~~~~~a~----------------   92 (495)
T PRK14995         30 PTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDR-IGFKRLLMLGGTLFGLASLAAAFSP----------------   92 (495)
T ss_pred             HHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHcC----------------
Confidence            34456899999999999999999888888999999999 5999999999999999998877641                


Q ss_pred             cccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhcccc---
Q 048319          100 ECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYIK---  173 (348)
Q Consensus       100 ~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi~---  173 (348)
                            +...++++..+.++|.|++.|.......+.+.++  +   +|   .+.+.++....+   .+++.+.+++-   
T Consensus        93 ------~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~--~---~r---~~~~g~~~~~~~~g~~~gp~lgg~l~~~~  158 (495)
T PRK14995         93 ------TASWLIATRALLAIGAAMIVPATLAGIRATFTEE--K---QR---NMALGVWAAVGSGGAAFGPLVGGILLEHF  158 (495)
T ss_pred             ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH--H---HH---HHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence                  3567888888999999998888877777766432  1   24   567888888777   67777777664   


Q ss_pred             cchhhHHHHHHHHHHHHHHH
Q 048319          174 PWNLRFGVSAICTVIATLLF  193 (348)
Q Consensus       174 g~~~~F~i~~~~~~i~~~vf  193 (348)
                      ||++.|.+.....++..++.
T Consensus       159 gwr~~f~i~~~~~~~~~~l~  178 (495)
T PRK14995        159 YWGSVFLINVPIVLVVMGLT  178 (495)
T ss_pred             ChHHHHHHHHHHHHHHHHHH
Confidence            99999998765555544433

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.89  E-value=4.2e-08  Score=96.66  Aligned_cols=148  Identities=14%  Similarity=0.142  Sum_probs=111.8

Q ss_pred             HHHHHhHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccC
Q 048319            9 CLAQFVMWTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLA   88 (348)
Q Consensus         9 r~a~yg~~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~   88 (348)
                      .+.++.+..+..++.+++|.+..+++.+.+.+.....+..+++|+++||+ |||+++.++.++..++.++...+.     
T Consensus        31 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~-----  104 (426)
T PRK12307         31 GFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVAYSVGTGLSGLAS-----  104 (426)
T ss_pred             HhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHh-----
Confidence            33333333345566678999999999999999999999999999999995 999999999999999988766641     


Q ss_pred             CCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhc
Q 048319           89 GFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAA  165 (348)
Q Consensus        89 ~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~  165 (348)
                                       +...++++..+.++|.|+.-+...++..|.++++.      |   .+...++..+.+   .++
T Consensus       105 -----------------~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r---~~~~~~~~~~~~lg~~~~  158 (426)
T PRK12307        105 -----------------GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------K---SKASAFLVSGFGIGNIIA  158 (426)
T ss_pred             -----------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------h---hHhhhHHHHHHhHHHHHH
Confidence                             35677888889999999999999999998876432      3   445556555555   555


Q ss_pred             chhhccc-c--cchhhHHHHHHHHHH
Q 048319          166 IIPISYI-K--PWNLRFGVSAICTVI  188 (348)
Q Consensus       166 ~~~~~yi-~--g~~~~F~i~~~~~~i  188 (348)
                      +.+.+++ +  ||++.|.+.++..++
T Consensus       159 ~~l~~~l~~~~~w~~~f~i~~~~~~~  184 (426)
T PRK12307        159 AYFMPSFAEAYGWRAAFFVGLLPVLL  184 (426)
T ss_pred             HHHHHHHcccCCHHHHHHHHHHHHHH
Confidence            5444444 3  999999986554433

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.87  E-value=5.6e-08  Score=97.80  Aligned_cols=149  Identities=13%  Similarity=0.116  Sum_probs=113.7

Q ss_pred             HHHHHHhHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCcc
Q 048319            8 DCLAQFVMWTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVL   87 (348)
Q Consensus         8 Er~a~yg~~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~   87 (348)
                      ..+.++.+..+..++.+++|.+..+++.+.+.+.....+..+++|+++||+ ||||++.++.++..++.+++..+.    
T Consensus        32 ~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~----  106 (496)
T PRK03893         32 DGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIVLFSVGTLACGFAP----  106 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHh----
Confidence            334443335556677788999999999999999998899999999999995 999999999999999988877641    


Q ss_pred             CCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hh
Q 048319           88 AGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VA  164 (348)
Q Consensus        88 ~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~  164 (348)
                                        +...++++..+.+++.|+..+...++..|.+++++      |   ...+..++...+   .+
T Consensus       107 ------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r---~~~~~~~~~~~~~g~~~  159 (496)
T PRK03893        107 ------------------GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------R---NKASGFLISGFSIGAVV  159 (496)
T ss_pred             ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------H---HHHHHHHHHHHHHHHHH
Confidence                              35667888889999999999999999998886432      2   445566666555   55


Q ss_pred             cchhhcccc---cchhhHHHHHHHHHH
Q 048319          165 AIIPISYIK---PWNLRFGVSAICTVI  188 (348)
Q Consensus       165 ~~~~~~yi~---g~~~~F~i~~~~~~i  188 (348)
                      ++.+..++-   ||++.|.+.++..++
T Consensus       160 ~~~~~~~l~~~~~w~~~f~~~~~~~~~  186 (496)
T PRK03893        160 AAQVYSLVVPVWGWRALFFIGILPIIF  186 (496)
T ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence            555555443   999999886554443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.87  E-value=5e-08  Score=95.89  Aligned_cols=149  Identities=13%  Similarity=0.049  Sum_probs=109.7

Q ss_pred             HHHHHhHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccC
Q 048319            9 CLAQFVMWTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLA   88 (348)
Q Consensus         9 r~a~yg~~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~   88 (348)
                      |-.++.+.....-+.+++|.+..+.+.+.+.+....-+..+++|+++|| +||||++..+..+..+|.++...+.     
T Consensus        22 ~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr-~G~r~~l~~~~~l~~~~~~~~~~a~-----   95 (393)
T PRK09705         22 RPLLTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQH-VSERRSVAISLLLIAVGALMRELYP-----   95 (393)
T ss_pred             chhhhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-hCchHHHHHHHHHHHHHHHHHHHCc-----
Confidence            3333434333445667899999999999999999999999999999999 5999999999999999999887652     


Q ss_pred             CCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhc
Q 048319           89 GFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAA  165 (348)
Q Consensus        89 ~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~  165 (348)
                                       +...++++..+.++|.|..-+.......|.++++       |   ......+..+.+   .++
T Consensus        96 -----------------~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~~-------~---~~~~g~~~~~~~~g~~~g  148 (393)
T PRK09705         96 -----------------QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQR-------T---PLVMGLWSAALMGGGGLG  148 (393)
T ss_pred             -----------------chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcccc-------c---hhHHHHHHHHHHHHHHHH
Confidence                             2456778888999999999898888888776421       2   445555555555   555


Q ss_pred             chhhcccc----cchhhHHHHHHHHHHHH
Q 048319          166 IIPISYIK----PWNLRFGVSAICTVIAT  190 (348)
Q Consensus       166 ~~~~~yi~----g~~~~F~i~~~~~~i~~  190 (348)
                      ..+.+++.    +|+..|.+-++..++..
T Consensus       149 ~~~~~~l~~~~~~w~~~~~~~~~~~~~~~  177 (393)
T PRK09705        149 AAITPWLVQHSETWYQTLAWWALPAVVAL  177 (393)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            55555442    79888765444433333

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.86  E-value=8.6e-08  Score=93.71  Aligned_cols=149  Identities=9%  Similarity=-0.036  Sum_probs=110.4

Q ss_pred             HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccC-CccCCCCCCC
Q 048319           16 WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTP-PVLAGFVGTC   94 (348)
Q Consensus        16 ~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~-p~~~~~~~~c   94 (348)
                      ..+..|+.+++|.+..+.+.+.+.+.....+..++.|+++||+ ||||++..+.+++.++.+++.++.. ...       
T Consensus        36 ~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~-------  107 (399)
T PRK05122         36 AVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGCALSGLLYLLAGLLAAW-------  107 (399)
T ss_pred             HHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHHHHHHHHHHHhhhhhcc-------
Confidence            5566788889999999999999999999999999999999995 9999999999998887766655422 100       


Q ss_pred             CCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhcc
Q 048319           95 SEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISY  171 (348)
Q Consensus        95 ~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~y  171 (348)
                              ...+...+++...+.++|.|..-|+..+...|.+++++      |   .+...++..+.+   .+++.+..+
T Consensus       108 --------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r---~~~~~~~~~~~~~g~~~g~~l~~~  170 (399)
T PRK05122        108 --------PVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------T---GRVISWNGIATYGALAIGAPLGVL  170 (399)
T ss_pred             --------chhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------h---ccchhhhhhhhhHHHHHHHHHHHH
Confidence                    00124467778889999999999999998888876432      3   445666555555   455555444


Q ss_pred             c-c--cchhhHHHHHHHHHHH
Q 048319          172 I-K--PWNLRFGVSAICTVIA  189 (348)
Q Consensus       172 i-~--g~~~~F~i~~~~~~i~  189 (348)
                      + +  ||+..|.+..+..++.
T Consensus       171 l~~~~g~~~~~~~~~~~~~~~  191 (399)
T PRK05122        171 LYHWGGLAGLGLLIMLLALLG  191 (399)
T ss_pred             HHHcccHHHHHHHHHHHHHHH
Confidence            4 2  9998888766554433

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.86  E-value=4.6e-08  Score=95.59  Aligned_cols=142  Identities=11%  Similarity=0.068  Sum_probs=104.3

Q ss_pred             HHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCC
Q 048319           18 MMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEY   97 (348)
Q Consensus        18 L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~   97 (348)
                      ...++.+++|.+..+.+.+.+.+.....+..++.|+++|| +||||.+.++.++..++.++...+.              
T Consensus        30 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~--------------   94 (394)
T PRK11652         30 AIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDR-VGRRPVILVGMSIFILGTLVALFAH--------------   94 (394)
T ss_pred             cHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHHHHHHHHHHHHHc--------------
Confidence            3455667899999999999999999999999999999999 5999999999999988887765531              


Q ss_pred             CCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhcccc-
Q 048319           98 KPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYIK-  173 (348)
Q Consensus        98 ~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi~-  173 (348)
                              +...++++..+.++|.|...+...++..|.+++++      +   .+...++..+.+   .+++.+..++. 
T Consensus        95 --------~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~~~~~~~~~g~~i~~~l~~  157 (394)
T PRK11652         95 --------SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------L---RHANSLLNMGILVSPLLAPLIGGLLTT  157 (394)
T ss_pred             --------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------H---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                    24567777888888888777777777777665321      2   334444444444   45555555443 


Q ss_pred             --cchhhHHHHHHHHHHHHH
Q 048319          174 --PWNLRFGVSAICTVIATL  191 (348)
Q Consensus       174 --g~~~~F~i~~~~~~i~~~  191 (348)
                        ||+..|.+.++..++..+
T Consensus       158 ~~g~~~~f~~~~~~~~~~~~  177 (394)
T PRK11652        158 LFGWRACYLFLLLLGAGVTF  177 (394)
T ss_pred             ccChHHHHHHHHHHHHHHHH
Confidence              999999987765554433

>PRK10504 putative transporter; Provisional

Probab=98.86  E-value=7.2e-08  Score=96.56  Aligned_cols=161  Identities=9%  Similarity=0.038  Sum_probs=118.7

Q ss_pred             HHHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhccc
Q 048319            5 LWADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMST   83 (348)
Q Consensus         5 e~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~   83 (348)
                      -++.-+.++.+ ..+-.|. +++|.+..+.+.+...+.....+..+++|+++|++ ||||.++.+..+..++.++...+.
T Consensus        19 ~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~   96 (471)
T PRK10504         19 FFMQSLDTTIVNTALPSMA-QSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFTLGSLFCALSG   96 (471)
T ss_pred             HHHHHHhHHHHHHHHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHHHHHHHhC
Confidence            34555566666 5444444 56999999999999998888888999999999995 999999999988888887655431


Q ss_pred             CCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh-
Q 048319           84 PPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP-  162 (348)
Q Consensus        84 ~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in-  162 (348)
                                            +...++++..+.++|.|..-|...+...|.+++++      +   .+.+.++....+ 
T Consensus        97 ----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~~~~~  145 (471)
T PRK10504         97 ----------------------TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------Y---MAAMTFVTLPGQV  145 (471)
T ss_pred             ----------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------H---HHHHHHHHHHHHH
Confidence                                  24567778889999999999988888888765321      3   456667666666 


Q ss_pred             --hhcchhhcccc---cchhhHHHHHHHHHHHHHHHHhcCc
Q 048319          163 --VAAIIPISYIK---PWNLRFGVSAICTVIATLLFLSGTC  198 (348)
Q Consensus       163 --~~~~~~~~yi~---g~~~~F~i~~~~~~i~~~vf~~g~~  198 (348)
                        .+++.+.+++.   ||++.|.+......++.++.....+
T Consensus       146 g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~  186 (471)
T PRK10504        146 GPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMP  186 (471)
T ss_pred             HHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence              66666666553   9999999877666655554444333

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.86  E-value=3.3e-08  Score=94.38  Aligned_cols=145  Identities=11%  Similarity=0.014  Sum_probs=109.1

Q ss_pred             HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCC
Q 048319           16 WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCS   95 (348)
Q Consensus        16 ~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~   95 (348)
                      ..+..++.+++|++..+.+.+.+.+.....+..+++|+++|| +|||+++.++.++..+|.++...+.            
T Consensus        23 ~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~-~G~r~~~~~~~~~~~~~~~~~~~~~------------   89 (377)
T TIGR00890        23 TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADK-FGPRAVAMLGGILYGLGFTFYAIAD------------   89 (377)
T ss_pred             hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-cCccchhHHhHHHHHHHHHHHHHHH------------
Confidence            567888889999999999999999999999999999999999 5999999999999999987766541            


Q ss_pred             CCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhc-c
Q 048319           96 EYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPIS-Y  171 (348)
Q Consensus        96 ~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~-y  171 (348)
                                +...++++..+.++|.|..-+...+...+.+++    +   |   .....++....+   .++..... .
T Consensus        90 ----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~---~---~~~~~~~~~~~~~g~~~~~~~~~~~  149 (377)
T TIGR00890        90 ----------SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD----K---R---GLASGIIIGGYGLGSFILSPLITSV  149 (377)
T ss_pred             ----------HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc----c---c---HHHHHHHHHhcchhHhHHHHHHHHH
Confidence                      356677777788999888777777766655532    1   2   445666666555   22222222 3


Q ss_pred             cc--cchhhHHHHHHHHHHHHHHH
Q 048319          172 IK--PWNLRFGVSAICTVIATLLF  193 (348)
Q Consensus       172 i~--g~~~~F~i~~~~~~i~~~vf  193 (348)
                      ++  ||++.|.+.++..++..+..
T Consensus       150 ~~~~~~~~~f~~~~~~~~~~~~~~  173 (377)
T TIGR00890       150 INLEGVPAAFIYMGIIFLLVIVLG  173 (377)
T ss_pred             HhcccHHHHHHHHHHHHHHHHHHH
Confidence            33  89999998887666554433

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.86  E-value=3.6e-08  Score=97.85  Aligned_cols=106  Identities=13%  Similarity=0.160  Sum_probs=89.7

Q ss_pred             hH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCC
Q 048319           14 VM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVG   92 (348)
Q Consensus        14 g~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~   92 (348)
                      ++ ..+...+++++|++..+++.+...+.....+..+++|++.|| +||||++.++..+..+|.+++..++.        
T Consensus        20 ~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r-~G~r~~~~~g~~l~~~g~~l~~~~~~--------   90 (410)
T TIGR00885        20 DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKK-LSYKAGILLGLFLYALGAFLFWPAAE--------   90 (410)
T ss_pred             HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHHh--------
Confidence            45 667788889999999999999999999999999999999999 59999999999999999877643321        


Q ss_pred             CCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhcc
Q 048319           93 TCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIA  139 (348)
Q Consensus        93 ~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~  139 (348)
                                 ..+...++++..+.++|.|...+..+++..+..+++
T Consensus        91 -----------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~  126 (410)
T TIGR00885        91 -----------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPES  126 (410)
T ss_pred             -----------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHh
Confidence                       113567888899999999999999999988765443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.85  E-value=7.9e-08  Score=93.85  Aligned_cols=141  Identities=16%  Similarity=0.134  Sum_probs=106.4

Q ss_pred             HHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCC
Q 048319           20 EYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKP   99 (348)
Q Consensus        20 ~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~   99 (348)
                      ..+.+++|.+..+.+.+...+.....+..++.|+++|| +|||+.+.++.++..++..++..+.                
T Consensus        27 p~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~~~i~~~~~~~~~----------------   89 (392)
T PRK10473         27 PRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADR-SGRKPVAIPGAALFIIASLLCSLAE----------------   89 (392)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHH-hCChHHHHHHHHHHHHHHHHHHHhC----------------
Confidence            33456799999999999999888888889999999999 5999999999999999888766531                


Q ss_pred             cccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhccc-c--
Q 048319          100 ECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYI-K--  173 (348)
Q Consensus       100 ~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi-~--  173 (348)
                            +...++++..+.+++.|..-+...++..|.+++++      |   .+..++++...+   .+++.+..++ +  
T Consensus        90 ------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r---~~~~~~~~~~~~i~~~~~~~i~~~l~~~~  154 (392)
T PRK10473         90 ------TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------R---AKVLSLLNGITCIIPVLAPVLGHLIMLKF  154 (392)
T ss_pred             ------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------H---HHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence                  23456667778889988888888888888776432      3   556677666665   4555554444 2  


Q ss_pred             cchhhHHHHHHHHHHHHHH
Q 048319          174 PWNLRFGVSAICTVIATLL  192 (348)
Q Consensus       174 g~~~~F~i~~~~~~i~~~v  192 (348)
                      ||+..|.+.++..++..++
T Consensus       155 g~~~~~~~~~~~~~i~~~~  173 (392)
T PRK10473        155 PWQSLFYTMAAMGILVLLL  173 (392)
T ss_pred             ChHHHHHHHHHHHHHHHHH
Confidence            9999998877666555443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.85  E-value=1.1e-07  Score=93.15  Aligned_cols=142  Identities=17%  Similarity=0.131  Sum_probs=99.6

Q ss_pred             HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCC
Q 048319           16 WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCS   95 (348)
Q Consensus        16 ~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~   95 (348)
                      ......+.+++|.+..+.+.+.+.+.....+..+++|+++||+ |||+++..+......+.. ...++            
T Consensus        11 ~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~-~~~~~------------   76 (368)
T TIGR00903        11 SPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAG-RLLDP------------   76 (368)
T ss_pred             HhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHH-HHHHh------------
Confidence            4555667778999999999999999998899999999999996 999887766555544432 11210            


Q ss_pred             CCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhccc
Q 048319           96 EYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYI  172 (348)
Q Consensus        96 ~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi  172 (348)
                               .+...++++..+.++|.|.. ++..+..+|.++++   |   |   .+..+++..+.+   .+++.+.+++
T Consensus        77 ---------~~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~---~---r---~~a~~~~~~~~~lG~~l~~~~~~~l  137 (368)
T TIGR00903        77 ---------FNYEWLLACQLLAALGQPFL-LNAFAPAASQIREE---R---R---DLVISLLSFAMYLGIIFALAAGLKI  137 (368)
T ss_pred             ---------ccHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHH---H---H---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     13567888888999999865 44445557666532   2   3   556777777666   6666666666


Q ss_pred             c---cchhhHHHHHHHHHHHH
Q 048319          173 K---PWNLRFGVSAICTVIAT  190 (348)
Q Consensus       173 ~---g~~~~F~i~~~~~~i~~  190 (348)
                      .   ||+..|.+.++.-++..
T Consensus       138 ~~~~gWr~~f~~~~~l~~~~~  158 (368)
T TIGR00903       138 YTAGGLQLLIIPIAAVAAAGI  158 (368)
T ss_pred             HHccchHHHHHHHHHHHHHHH
Confidence            3   99999988555444333

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.85  E-value=6.4e-08  Score=96.40  Aligned_cols=137  Identities=10%  Similarity=0.033  Sum_probs=105.7

Q ss_pred             HhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCCc
Q 048319           21 YLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPE  100 (348)
Q Consensus        21 Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~~  100 (348)
                      .+.+.+|++..+++.+.+.+.....+..+++|+++|| +|||+.+.++.++..++.++...+.                 
T Consensus        48 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~-----------------  109 (434)
T PRK11663         48 EMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDR-SNARYFMGIGLIATGIINILFGFSS-----------------  109 (434)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhh-cCCchhHHHHHHHHHHHHHHHHHHh-----------------
Confidence            3445799999999999999999999999999999999 5999999999999999887766541                 


Q ss_pred             ccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhcccc---c
Q 048319          101 CIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYIK---P  174 (348)
Q Consensus       101 c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi~---g  174 (348)
                           +...+++...+.+++.|..-|...+..+|.+++++      |   .....+++.+.+   .+++.+.+++.   |
T Consensus       110 -----~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------r---g~~~~~~~~~~~~g~~~~~~~~~~l~~~~g  175 (434)
T PRK11663        110 -----SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------R---GGWWAIWNTAHNVGGALIPLVVGAIALHYG  175 (434)
T ss_pred             -----HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence                 24555666667788888888888999998886432      3   556777777666   55555555443   9


Q ss_pred             chhhHHHHHHHHHHH
Q 048319          175 WNLRFGVSAICTVIA  189 (348)
Q Consensus       175 ~~~~F~i~~~~~~i~  189 (348)
                      |++.|.+.++..++.
T Consensus       176 w~~~f~~~~i~~~~~  190 (434)
T PRK11663        176 WRYGMMIAGIIAIVV  190 (434)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999877654433

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.84  E-value=4.7e-08  Score=96.28  Aligned_cols=141  Identities=13%  Similarity=0.159  Sum_probs=112.2

Q ss_pred             hhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCCcc
Q 048319           22 LTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPEC  101 (348)
Q Consensus        22 l~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~~c  101 (348)
                      +.+.+|.+..+.+...+.+.....+..++.|.++|| +||||.+..+.++..++.++...+                   
T Consensus        46 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~-------------------  105 (394)
T PRK10213         46 MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQA-TDRRYVVILFAVLLTLSCLLVSFA-------------------  105 (394)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence            446799999999999999998888999999999999 599999999999999988776553                   


Q ss_pred             cccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhcccc---cc
Q 048319          102 IVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYIK---PW  175 (348)
Q Consensus       102 ~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi~---g~  175 (348)
                         .+...+++...+.+++.|...|...++..|.+++++      +   .....++....|   .+++.+.+++.   ||
T Consensus       106 ---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------~---~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw  173 (394)
T PRK10213        106 ---NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT------V---PKALSVIFGAVSIALVIAAPLGSFLGELIGW  173 (394)
T ss_pred             ---ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH------H---HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCH
Confidence               135678888889999999999999999998886432      3   556777777666   66666666653   99


Q ss_pred             hhhHHHHHHHHHHHHHHHH
Q 048319          176 NLRFGVSAICTVIATLLFL  194 (348)
Q Consensus       176 ~~~F~i~~~~~~i~~~vf~  194 (348)
                      ++.|.+.++..++..+...
T Consensus       174 ~~~f~~~~~l~~~~~l~~~  192 (394)
T PRK10213        174 RNVFNAAAVMGVLCIFWII  192 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999987766555444333

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.84  E-value=1.5e-07  Score=90.46  Aligned_cols=160  Identities=13%  Similarity=0.048  Sum_probs=105.7

Q ss_pred             HHHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHH-HHHHHhhhhhhhhcc
Q 048319            5 LWADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVF-SSLAYSVGIGLLTMS   82 (348)
Q Consensus         5 e~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~-~~~i~~~G~~ll~~s   82 (348)
                      .++-.+++... ..+..|+.+++|.+..+.+.+.+.+.....+..++.|.++||+ ||||.+.+ +..+..++.++...+
T Consensus         6 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~   84 (375)
T TIGR00899         6 AFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLFAWN   84 (375)
T ss_pred             HHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHHHhc
Confidence            45556666667 7788899999999999999999999888888888999999995 99887655 445555555554443


Q ss_pred             cCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh
Q 048319           83 TPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP  162 (348)
Q Consensus        83 ~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in  162 (348)
                      .                      +...+++...+.+.+.+..-|...+...|..+++    ++.+   ..+..+.....|
T Consensus        85 ~----------------------~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~  135 (375)
T TIGR00899        85 R----------------------NYFLLLVLGVLLSSFASTANPQLFALAREHADRT----GREA---VMFSSVMRAQIS  135 (375)
T ss_pred             c----------------------hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhc----chhh---HHHHHHHHHHHh
Confidence            1                      2344455445555566666666666666554321    1111   122445555555


Q ss_pred             ---hhcchhhccc-c--cchhhHHHHHHHHHHHHHHHH
Q 048319          163 ---VAAIIPISYI-K--PWNLRFGVSAICTVIATLLFL  194 (348)
Q Consensus       163 ---~~~~~~~~yi-~--g~~~~F~i~~~~~~i~~~vf~  194 (348)
                         .+++.+.+++ +  ||++.|.+.++..++..++.+
T Consensus       136 ~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~  173 (375)
T TIGR00899       136 LAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVW  173 (375)
T ss_pred             HHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence               6666665555 3  999999998877666554433

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.84  E-value=8.6e-08  Score=93.65  Aligned_cols=152  Identities=12%  Similarity=0.094  Sum_probs=112.3

Q ss_pred             HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCC
Q 048319           16 WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCS   95 (348)
Q Consensus        16 ~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~   95 (348)
                      ..+...+.+++|.+.++.+.+.+.+....-+..+++|+++||+ ||||++.++..+..++.++...+.            
T Consensus        23 ~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~l~~~~~------------   89 (382)
T PRK10091         23 MGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVIGNAMFTLSS------------   89 (382)
T ss_pred             HhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHHHHHHHHHhC------------
Confidence            3345566778999999999999999999999999999999995 999999999999999988776541            


Q ss_pred             CCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhccc
Q 048319           96 EYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYI  172 (348)
Q Consensus        96 ~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi  172 (348)
                                +...++++..+.+++.|...|...+...|.+++++      +   .+....+..+.+   .+++.+..++
T Consensus        90 ----------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~~~~~g~~~g~~l~~~l  150 (382)
T PRK10091         90 ----------SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------V---TAAVAGMVSGMTVANLLGIPLGTYL  150 (382)
T ss_pred             ----------cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------h---hHHHHHHHHHHHHHHHHhccHHHHH
Confidence                      35677888889999999887777777766554321      2   345555555444   4555554444


Q ss_pred             c---cchhhHHHHHHHHHHHHHHHHhcCcc
Q 048319          173 K---PWNLRFGVSAICTVIATLLFLSGTCT  199 (348)
Q Consensus       173 ~---g~~~~F~i~~~~~~i~~~vf~~g~~~  199 (348)
                      -   ||++.|.+.++..++..+......|.
T Consensus       151 ~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~  180 (382)
T PRK10091        151 SQEFSWRYTFLLIAVFNIAVLASIYFWVPD  180 (382)
T ss_pred             hhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            2   99999999887666555444433343

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.82  E-value=1.6e-07  Score=93.47  Aligned_cols=159  Identities=12%  Similarity=0.150  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHhHHHHHHHhhhhhC---CchHHHHHHHHHHHHHHH---HHhhhHHHHHhhhccchHHHHHHHHHHhhhhh
Q 048319            4 LLWADCLAQFVMWTMMEYLTEVWK---ISVVHAAGIVNIFSGLVL---VLQLPMQYLVDTIISKYWMLVFSSLAYSVGIG   77 (348)
Q Consensus         4 ~e~~Er~a~yg~~~L~~Yl~~~l~---~~~~~A~~i~~~~~~~~~---~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~   77 (348)
                      +|..||.. +  +.+..++.++++   .+..+...+...+.....   +..+++|+++||+ ||||++.++.+++.++.+
T Consensus        33 ~~~~d~~~-~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~~  108 (432)
T PRK10406         33 VEWFDFYV-Y--SFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLISVCMMCFGSL  108 (432)
T ss_pred             HHHHHHHH-H--HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHH
Confidence            45555554 3  334456667764   555544444444433333   5667888999995 999999999999999988


Q ss_pred             hhhcccCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHH
Q 048319           78 LLTMSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLL  157 (348)
Q Consensus        78 ll~~s~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~  157 (348)
                      +..++  |+...    -        .......+++...+.++|.|+.-|...++++|.+++++      |   ..+..+.
T Consensus       109 ~~~~~--~~~~~----~--------~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------r---g~~~~~~  165 (432)
T PRK10406        109 VIACL--PGYET----I--------GTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------K---GFYASFQ  165 (432)
T ss_pred             HHhhc--CCchh----H--------HHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------c---cHHHHHH
Confidence            87664  11100    0        00112457778889999999999999999998876432      3   4456666


Q ss_pred             HHHHh---hhcchhhc----cc------c-cchhhHHHHHHHHHHH
Q 048319          158 LFMVP---VAAIIPIS----YI------K-PWNLRFGVSAICTVIA  189 (348)
Q Consensus       158 y~~in---~~~~~~~~----yi------~-g~~~~F~i~~~~~~i~  189 (348)
                      +...+   +++..+..    ++      . ||++.|.+.++..++.
T Consensus       166 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~  211 (432)
T PRK10406        166 YVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA  211 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence            66655   33332211    11      2 9999999877755544

>PRK03699 putative transporter; Provisional

Probab=98.81  E-value=1.9e-07  Score=91.62  Aligned_cols=154  Identities=15%  Similarity=0.144  Sum_probs=110.3

Q ss_pred             HHHHHHHhHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCc
Q 048319            7 ADCLAQFVMWTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPV   86 (348)
Q Consensus         7 ~Er~a~yg~~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~   86 (348)
                      ++....+.+..+..-+.+++|++..+.+.+.+.+.....+..+++|+++|| +||||++.++.++..++.+++..+.   
T Consensus        18 ~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~g~r~~~~~~~~~~~i~~~l~~~~~---   93 (394)
T PRK03699         18 LTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEI-IPLKRQLIFGFALMILAVAGLMFSH---   93 (394)
T ss_pred             HHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHcc---
Confidence            333333334333444567899999999999999988888999999999999 5999999999999998888776541   


Q ss_pred             cCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---h
Q 048319           87 LAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---V  163 (348)
Q Consensus        87 ~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~  163 (348)
                                         +...++++..+.+++.|...+...+...|.+++++      |   ....+..+...+   .
T Consensus        94 -------------------~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r---~~~~~~~~~~~~~g~~  145 (394)
T PRK03699         94 -------------------SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------R---GSRLLFTDSFFSMAGM  145 (394)
T ss_pred             -------------------hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------H---HHHHHHHHHHHHHHHH
Confidence                               34567778888999999999999999999885421      2   233333333333   4


Q ss_pred             hcchhhccc--c--cchhhHHHHHHHHHHHHHH
Q 048319          164 AAIIPISYI--K--PWNLRFGVSAICTVIATLL  192 (348)
Q Consensus       164 ~~~~~~~yi--~--g~~~~F~i~~~~~~i~~~v  192 (348)
                      +++...+++  +  ||++.|.+.++..++..++
T Consensus       146 ~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~  178 (394)
T PRK03699        146 IFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL  178 (394)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence            444444443  2  8999999877666554443

>PRK11043 putative transporter; Provisional

Probab=98.80  E-value=9.4e-08  Score=93.63  Aligned_cols=140  Identities=13%  Similarity=0.085  Sum_probs=106.0

Q ss_pred             hhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCCcc
Q 048319           22 LTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPEC  101 (348)
Q Consensus        22 l~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~~c  101 (348)
                      +.+++|.+..+++.+.+.+.....+..+++|+++|| +|||+.+..+..+..++.++...+.                  
T Consensus        32 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~------------------   92 (401)
T PRK11043         32 IQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDR-YGRKPVLLAGLSLFALGSLGMLWVE------------------   92 (401)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhh-cCCcHHHHHHHHHHHHHHHHHHHhc------------------
Confidence            567899999999999999999999999999999999 5999999999999888887766531                  


Q ss_pred             cccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhcccc---cc
Q 048319          102 IVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYIK---PW  175 (348)
Q Consensus       102 ~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi~---g~  175 (348)
                          +...++++..+.++|.|..-+...++..|.++++.      +   .+.++......+   .+++.+.+++.   ||
T Consensus        93 ----~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~  159 (401)
T PRK11043         93 ----SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------A---NRVFATIMPLVALSPALAPLLGAWLLNHFGW  159 (401)
T ss_pred             ----CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------H---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence                24566777788888888877777788888776432      2   344555444444   55665555553   99


Q ss_pred             hhhHHHHHHHHHHHHHHH
Q 048319          176 NLRFGVSAICTVIATLLF  193 (348)
Q Consensus       176 ~~~F~i~~~~~~i~~~vf  193 (348)
                      +..|.+.++..++..+..
T Consensus       160 ~~~~~~~~~~~~~~~~~~  177 (401)
T PRK11043        160 QAIFATLFAITLLLILPT  177 (401)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999998776666555443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.77  E-value=7.2e-08  Score=94.80  Aligned_cols=137  Identities=16%  Similarity=0.122  Sum_probs=105.2

Q ss_pred             CchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCCcccccchh
Q 048319           28 ISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECIVKGHK  107 (348)
Q Consensus        28 ~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~~c~~~~~~  107 (348)
                      .+..+.+.+.+.+.....+..+++|+++|| +|||+++.++.++..+|.++....+.                   ....
T Consensus        68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~  127 (481)
T TIGR00879        68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDR-FGRKKSLLIIALLFVIGAILMGLAAF-------------------ALSV  127 (481)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhHhhhh-hhhHHHHHHHHHHHHHHHHHHHHhcc-------------------ccch
Confidence            338999999999999999999999999999 59999999999999999888765421                   1123


Q ss_pred             HHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhh---ccc-c--cchhh
Q 048319          108 ILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPI---SYI-K--PWNLR  178 (348)
Q Consensus       108 ~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~---~yi-~--g~~~~  178 (348)
                      +.++++..+.++|.|..-+...++.+|.+++++      |   .....+++.+.+   ++++.+.   ... .  ||++.
T Consensus       128 ~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r---~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~  198 (481)
T TIGR00879       128 EMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------R---GALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIP  198 (481)
T ss_pred             HHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------h---hhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHH
Confidence            577888999999999999999999998876442      3   456667666666   5555554   333 2  99999


Q ss_pred             HHHHHHHHHHHHHHH
Q 048319          179 FGVSAICTVIATLLF  193 (348)
Q Consensus       179 F~i~~~~~~i~~~vf  193 (348)
                      |.+.++..++..+..
T Consensus       199 f~~~~~~~~~~~~~~  213 (481)
T TIGR00879       199 LGLQLIPAGLLFLGL  213 (481)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999666555554433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10133 L-fucose transporter; Provisional

Probab=98.75  E-value=2.2e-07  Score=93.10  Aligned_cols=100  Identities=14%  Similarity=0.175  Sum_probs=85.0

Q ss_pred             HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCC
Q 048319           16 WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCS   95 (348)
Q Consensus        16 ~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~   95 (348)
                      ..+...+++.+|.+..+++.+...+.....+..++.|.++||+ ||||++.++..++.+|.++...++.           
T Consensus        46 ~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~~~~~~l~~~~~~-----------  113 (438)
T PRK10133         46 DILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYALGAALFWPAAE-----------  113 (438)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence            3455566788999999999999999999999999999999995 9999999999999999987642211           


Q ss_pred             CCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHh
Q 048319           96 EYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQ  135 (348)
Q Consensus        96 ~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq  135 (348)
                              ..+...+++++.+.++|.|...+..+++++|.
T Consensus       114 --------a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~  145 (438)
T PRK10133        114 --------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVL  145 (438)
T ss_pred             --------cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence                    01357788999999999999999999999874

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.72  E-value=2e-07  Score=93.31  Aligned_cols=144  Identities=10%  Similarity=-0.006  Sum_probs=101.7

Q ss_pred             hCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCC--ccCCCCCCCCCCCCcccc
Q 048319           26 WKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPP--VLAGFVGTCSEYKPECIV  103 (348)
Q Consensus        26 l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p--~~~~~~~~c~~~~~~c~~  103 (348)
                      +|.+..+.+.+.+.+.....+.++++|+++|| +||||+++++.+++.++.++.......  ...+  +          +
T Consensus        50 ~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr-~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~--~----------~  116 (479)
T PRK10077         50 ESAANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISALGSAWPEFGFTSIGP--D----------N  116 (479)
T ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHhhccccccccc--c----------c
Confidence            38889999999999999999999999999999 599999999999999887766653221  0000  0          1


Q ss_pred             cchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhc---------c
Q 048319          104 KGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPIS---------Y  171 (348)
Q Consensus       104 ~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~---------y  171 (348)
                      ......++++..+.++|.|+.-|...++++|.++++.      |   ......+-.+..   ++++.+..         .
T Consensus       117 ~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------r---g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~  187 (479)
T PRK10077        117 TGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------R---GKLVSFNQFAIIFGQLVVYFVNYFIARSGDASW  187 (479)
T ss_pred             hhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------h---hHHHHHHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence            1234567788899999999999999999999887532      2   233333333322   33322211         1


Q ss_pred             cc--cchhhHHHHHHHHHHHHH
Q 048319          172 IK--PWNLRFGVSAICTVIATL  191 (348)
Q Consensus       172 i~--g~~~~F~i~~~~~~i~~~  191 (348)
                      ++  ||++.|.+.++..++..+
T Consensus       188 ~~~~gWr~~f~~~~~~~~~~~~  209 (479)
T PRK10077        188 LNTDGWRYMFASEAIPALLFLM  209 (479)
T ss_pred             cccCChHHHHHHHHHHHHHHHH
Confidence            12  899999987766665544

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.72  E-value=1.9e-07  Score=93.52  Aligned_cols=143  Identities=9%  Similarity=-0.010  Sum_probs=105.3

Q ss_pred             HHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCC
Q 048319           18 MMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEY   97 (348)
Q Consensus        18 L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~   97 (348)
                      ...|+.+. |++..+.+.+.+.+....-+..+++|+++||+ ||||++.++.++..++.+++.+...             
T Consensus        51 ~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~-------------  115 (452)
T PRK11273         51 AMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPW-------------  115 (452)
T ss_pred             hhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhc-------------
Confidence            34567777 99999999999999999999999999999995 9999999999999988887765421             


Q ss_pred             CCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh----hhcchhhccc-
Q 048319           98 KPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP----VAAIIPISYI-  172 (348)
Q Consensus        98 ~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in----~~~~~~~~yi-  172 (348)
                           ...+...+++...+.+++.|..-|.......|.+++++      |   ....++++.+.+    +.++.....+ 
T Consensus       116 -----~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r---~~~~~~~~~~~~~g~~~~~~l~~~~~~  181 (452)
T PRK11273        116 -----ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------R---GGIVSVWNCAHNVGGGLPPLLFLLGMA  181 (452)
T ss_pred             -----ccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------H---HHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence                 01134566777788899999988888888888775432      3   556777666666    2223221111 


Q ss_pred             -c-cchhhHHHHHHHHHHH
Q 048319          173 -K-PWNLRFGVSAICTVIA  189 (348)
Q Consensus       173 -~-g~~~~F~i~~~~~~i~  189 (348)
                       . ||++.|.+.++..++.
T Consensus       182 ~~~gw~~~f~i~~~~~~~~  200 (452)
T PRK11273        182 WFNDWHAALYMPAFAAILV  200 (452)
T ss_pred             HhccHHHHHHHHHHHHHHH
Confidence             2 9999999877665554

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.71  E-value=4.2e-07  Score=88.73  Aligned_cols=156  Identities=13%  Similarity=0.005  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHhH-HHHHHHhhhhhCCchHHH-----HHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhh
Q 048319            4 LLWADCLAQFVM-WTMMEYLTEVWKISVVHA-----AGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIG   77 (348)
Q Consensus         4 ~e~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A-----~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~   77 (348)
                      ..++..+++... ..+-.|++ ++|.+..++     +.+.+.+.....+..++.|+++|| +|||+.+..+.++..++.+
T Consensus        22 ~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~   99 (408)
T PRK09874         22 GCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADR-KGRKIMLLRSALGMGIVMV   99 (408)
T ss_pred             HHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hCcHHHHHHHHHHHHHHHH
Confidence            345555666555 55555654 588886553     566677777778888899999999 5999999999999888887


Q ss_pred             hhhcccCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHH
Q 048319           78 LLTMSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLL  157 (348)
Q Consensus        78 ll~~s~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~  157 (348)
                      ++..+.                      +...++++..+.+++.+. -|...+...|++++++      +   .+...++
T Consensus       100 ~~~~~~----------------------~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~------~---~~~~~~~  147 (408)
T PRK09874        100 LMGLAQ----------------------NIWQFLILRALLGLLGGF-VPNANALIATQVPRNK------S---GWALGTL  147 (408)
T ss_pred             HHHHHh----------------------hHHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHhh------h---hHHHHHH
Confidence            765431                      245667777778887554 4666677777664321      3   4455666


Q ss_pred             HHHHh---hhcchhhcccc---cchhhHHHHHHHHHHHHHHH
Q 048319          158 LFMVP---VAAIIPISYIK---PWNLRFGVSAICTVIATLLF  193 (348)
Q Consensus       158 y~~in---~~~~~~~~yi~---g~~~~F~i~~~~~~i~~~vf  193 (348)
                      ....+   .+++.+.+++.   ||+..|.+.++..+++.+..
T Consensus       148 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  189 (408)
T PRK09874        148 STGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVT  189 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            66555   56666666553   99999998887766655433

>TIGR00896 CynX cyanate transporter

Probab=98.70  E-value=1.7e-07  Score=90.19  Aligned_cols=153  Identities=12%  Similarity=0.107  Sum_probs=112.6

Q ss_pred             HHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCC
Q 048319            7 ADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPP   85 (348)
Q Consensus         7 ~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p   85 (348)
                      +|--.++.. ..+...+.+++|++..+++.+.+.+.....+..++.|+++|| +||||++.++.++..+|.++. ..  +
T Consensus        10 ~~~~~~~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~-~~--~   85 (355)
T TIGR00896        10 LNLRPALTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARR-FGEERSVAAGLLLIAAGILIR-SA--P   85 (355)
T ss_pred             hcccCccccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCchHHHHHHHHHHHHHHHHH-Hh--c
Confidence            444456666 777778888999999999999999999999999999999999 599999999998888887655 21  1


Q ss_pred             ccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---
Q 048319           86 VLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---  162 (348)
Q Consensus        86 ~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---  162 (348)
                                          +...++++..+.++|.|...+..+....|.++++       +   .+..+++....+   
T Consensus        86 --------------------~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~~-------~---~~~~~~~~~~~~~g~  135 (355)
T TIGR00896        86 --------------------GTALLFAGTALIGVGIAIINVLLPSLIKRDFPQR-------V---GLMTGLYSMALMGGA  135 (355)
T ss_pred             --------------------cHHHHHHHHHHHHHHHHHHhccchHHHHHhCcch-------h---hHHHHHHHHHHHHHH
Confidence                                2355677788889999988888888777666421       3   446666666665   


Q ss_pred             hhcchhhcccc-----cchhhHHHHHHHHHHHHHHH
Q 048319          163 VAAIIPISYIK-----PWNLRFGVSAICTVIATLLF  193 (348)
Q Consensus       163 ~~~~~~~~yi~-----g~~~~F~i~~~~~~i~~~vf  193 (348)
                      .+++.+.+++.     +|+..|.+.++..++....+
T Consensus       136 ~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~  171 (355)
T TIGR00896       136 ALAAAATVPLAQHSGGHWQQALAWWALPALLALLAW  171 (355)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            45554444442     49999887666555444333

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.69  E-value=5.5e-07  Score=91.04  Aligned_cols=152  Identities=9%  Similarity=0.076  Sum_probs=101.5

Q ss_pred             HHHHHHHhHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCc
Q 048319            7 ADCLAQFVMWTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPV   86 (348)
Q Consensus         7 ~Er~a~yg~~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~   86 (348)
                      +.-+..+++.++..++.+++|++.++.+.+...+.....+..+++|+++|| +|||+++.++.++..++.++...+.   
T Consensus        47 ~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~G~r~~~~~~~~~~~~~~~~~~~~~---  122 (476)
T PLN00028         47 TCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDL-YGPRYGSAFLLMLTAPAVFCMSLVS---  122 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHhc---
Confidence            334444444555667888999999999988887777777788999999999 5999999999999888877666542   


Q ss_pred             cCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---h
Q 048319           87 LAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---V  163 (348)
Q Consensus        87 ~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~  163 (348)
                                         +...+++...+.++|.|..-+ .....++.++++.      |   ......++...|   .
T Consensus       123 -------------------s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~------r---g~a~g~~~~~~~~g~~  173 (476)
T PLN00028        123 -------------------SATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGKI------V---GTANGIAAGWGNLGGG  173 (476)
T ss_pred             -------------------CHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChhh------e---eHHHHHHHHHHHHHHH
Confidence                               234566666778888776533 3445666665321      2   344555444333   2


Q ss_pred             hcchhhccc------------ccchhhHHHHHHHHHHHHH
Q 048319          164 AAIIPISYI------------KPWNLRFGVSAICTVIATL  191 (348)
Q Consensus       164 ~~~~~~~yi------------~g~~~~F~i~~~~~~i~~~  191 (348)
                      ++..+.+.+            .||++.|.+.++..++..+
T Consensus       174 ~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l  213 (476)
T PLN00028        174 VTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGI  213 (476)
T ss_pred             HHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHH
Confidence            222222211            1799999998876665443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.69  E-value=9e-07  Score=84.94  Aligned_cols=165  Identities=16%  Similarity=0.100  Sum_probs=100.4

Q ss_pred             hHHHHHHHHHHHhHHHHHHHhhhhhCC--chHHHHHHH--HHHHHH---HHHHhhhHHHHHhhhccchHHHHHHHHHHhh
Q 048319            2 AALLWADCLAQFVMWTMMEYLTEVWKI--SVVHAAGIV--NIFSGL---VLVLQLPMQYLVDTIISKYWMLVFSSLAYSV   74 (348)
Q Consensus         2 ~~~e~~Er~a~yg~~~L~~Yl~~~l~~--~~~~A~~i~--~~~~~~---~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~   74 (348)
                      -++|.+||+.+   ..+..|+.++...  ++++.+.+.  ..+...   ..+..++.|+++|| +||||++.++.++..+
T Consensus         2 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~~~   77 (394)
T TIGR00883         2 NAVEWFDFYLY---GFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDR-IGRKKTLVITLLMMGI   77 (394)
T ss_pred             cchhHHHHHHH---HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhh-hhhHHHHHHHHHHHHH
Confidence            45788888533   2334444444332  233332222  222221   12467889999999 5999999999999999


Q ss_pred             hhhhhhcccCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHH
Q 048319           75 GIGLLTMSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFF  154 (348)
Q Consensus        75 G~~ll~~s~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f  154 (348)
                      +.++...+..  ...       .     .......++++..+.++|.|..-+...++.+|.+++++      |   ....
T Consensus        78 ~~~~~~~~~~--~~~-------~-----~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r---~~~~  134 (394)
T TIGR00883        78 GTLLIGLLPS--YAT-------I-----GIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------R---GFYG  134 (394)
T ss_pred             HHHHHhhCCC--hhh-------h-----HHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------c---hHHH
Confidence            9888776521  000       0     00112356777788999999999999999998776432      3   4455


Q ss_pred             HHHHHHHh---hhcchhhcc---------cc--cchhhHHHHHHHHHHHHHHH
Q 048319          155 KLLLFMVP---VAAIIPISY---------IK--PWNLRFGVSAICTVIATLLF  193 (348)
Q Consensus       155 ~~~y~~in---~~~~~~~~y---------i~--g~~~~F~i~~~~~~i~~~vf  193 (348)
                      .++..+.+   .+++.+...         ++  ||++.|.+.++..+++..+.
T Consensus       135 ~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  187 (394)
T TIGR00883       135 SFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLR  187 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence            55555544   334332221         12  89999998877766665543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.69  E-value=1.6e-07  Score=92.67  Aligned_cols=150  Identities=12%  Similarity=0.032  Sum_probs=106.8

Q ss_pred             HHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCC
Q 048319           18 MMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEY   97 (348)
Q Consensus        18 L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~   97 (348)
                      ....+..+++.+..+++.+...+.....+..+++|+++||+ ||||.+.++..+..++..++.+....   .        
T Consensus        39 ~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~~~~~~~~~~---~--------  106 (417)
T PRK10489         39 AVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGFIGLALNAFL---P--------  106 (417)
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHHHHHHHHHHc---C--------
Confidence            34444456888999999999999999999999999999995 99999999988888877665432110   0        


Q ss_pred             CCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhcccc-
Q 048319           98 KPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYIK-  173 (348)
Q Consensus        98 ~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi~-  173 (348)
                            ......+++...+.+++.|...|...+...|.+++++      +   .+...++++..+   .+++.+.+++- 
T Consensus       107 ------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~~~~~g~~~g~~l~g~l~~  171 (417)
T PRK10489        107 ------EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------L---MQAGAITMLTVRLGSVISPALGGLLIA  171 (417)
T ss_pred             ------CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------H---HHHHHHHHHHHhHHHHhHHHHHHHHHH
Confidence                  0124556666777788888777888888777665422      3   455666666666   56666665543 


Q ss_pred             --cchhhHHHHHHHHHHHHHHHH
Q 048319          174 --PWNLRFGVSAICTVIATLLFL  194 (348)
Q Consensus       174 --g~~~~F~i~~~~~~i~~~vf~  194 (348)
                        ||++.|.+.++..+++.+...
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~  194 (417)
T PRK10489        172 AGGVAWNYGLAAAGTFITLLPLL  194 (417)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHH
Confidence              899999988877776655443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.68  E-value=3.5e-07  Score=97.27  Aligned_cols=100  Identities=11%  Similarity=-0.095  Sum_probs=85.7

Q ss_pred             HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCC
Q 048319           16 WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCS   95 (348)
Q Consensus        16 ~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~   95 (348)
                      +.+..++...+|++..+++.+.+.+.....+..+++|+++|| +||+++++++.++..++.++..++.            
T Consensus       187 s~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR-~GRR~~lii~lil~~i~~ll~afa~------------  253 (742)
T TIGR01299       187 GFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADK-LGRKQCLLICLSVNGFFAFFSSFVQ------------  253 (742)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHh------------
Confidence            445566777899999999999999999999999999999999 5999999999999998887766531            


Q ss_pred             CCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhc
Q 048319           96 EYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEI  138 (348)
Q Consensus        96 ~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~  138 (348)
                                +...++++.++.++|.|+.-|...++.+|.++.
T Consensus       254 ----------s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~  286 (742)
T TIGR01299       254 ----------GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQ  286 (742)
T ss_pred             ----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Confidence                      246778888999999999999999999988764

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.68  E-value=8.5e-07  Score=87.31  Aligned_cols=134  Identities=13%  Similarity=0.037  Sum_probs=101.7

Q ss_pred             hhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCCcc
Q 048319           22 LTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPEC  101 (348)
Q Consensus        22 l~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~~c  101 (348)
                      +..++|.+....+.+...+.....++.+++|+++|| +||||+++++..+..++.+++....                  
T Consensus        29 ~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr-~grr~vl~~~~~~~~~~~~~~~~~~------------------   89 (393)
T PRK11195         29 LLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADS-FPKGRVMFIANGIKLLGCLLMLFGI------------------   89 (393)
T ss_pred             HHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhc-cCCchhhHHHHHHHHHHHHHHHHHH------------------
Confidence            356789999999999999999999999999999999 5999999999999988877654421                  


Q ss_pred             cccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhcccc--cch
Q 048319          102 IVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYIK--PWN  176 (348)
Q Consensus       102 ~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi~--g~~  176 (348)
                          +   .++...+.++|.|+..|...++..|.+++++      +   .+...+.....+   .+|+.+.+++-  .|+
T Consensus        90 ----~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~---~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~  153 (393)
T PRK11195         90 ----H---PLLAYGLVGIGAAAYSPAKYGILTELLPGEK------L---VKANGWMEGSTIAAILLGTVLGGALADPHAE  153 (393)
T ss_pred             ----H---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                1   1455678899999999999999999997643      3   556666655555   56666555543  677


Q ss_pred             hhHHHHHHHHHHHH
Q 048319          177 LRFGVSAICTVIAT  190 (348)
Q Consensus       177 ~~F~i~~~~~~i~~  190 (348)
                      ..|.+.+...+++.
T Consensus       154 ~~~~i~~~~~~~~~  167 (393)
T PRK11195        154 AALAVCALIYLLAA  167 (393)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77776665554443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.68  E-value=7e-07  Score=87.47  Aligned_cols=161  Identities=11%  Similarity=0.008  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcc
Q 048319            4 LLWADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMS   82 (348)
Q Consensus         4 ~e~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s   82 (348)
                      ..++.-.++..+ ..+..|+++++|++..+.+.+.+.+.....+..+++|+++|| +||||.++.+.....++...+...
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~   88 (396)
T TIGR00882        10 FFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDK-LGLKKHLLWIISGLLVLFAPFFIY   88 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHH
Confidence            345555666666 778889999999999999999999999999999999999999 599999998877766654432221


Q ss_pred             cC-CccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHH
Q 048319           83 TP-PVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMV  161 (348)
Q Consensus        83 ~~-p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~i  161 (348)
                      .. |...               ......+.++..+.+++.+...|....+..|.-    + +   +   ...|++.....
T Consensus        89 ~~~~~~~---------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~-~---~---~~~~g~~~~~~  142 (396)
T TIGR00882        89 VFGPLLQ---------------SNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS----R-N---S---NFEYGKARMFG  142 (396)
T ss_pred             HhhhHHH---------------HHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh----h-h---c---ccccchhhhhc
Confidence            11 1000               001223344455677777877777766654421    1 1   1   22455555666


Q ss_pred             h---hhcchhhcccc--cchhhHHHHHHHHHHHHH
Q 048319          162 P---VAAIIPISYIK--PWNLRFGVSAICTVIATL  191 (348)
Q Consensus       162 n---~~~~~~~~yi~--g~~~~F~i~~~~~~i~~~  191 (348)
                      |   .+++.+.+.+.  ||+..|.+.++..++..+
T Consensus       143 ~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~  177 (396)
T TIGR00882       143 CVGWALCASIAGILFSIDPQIVFWLGSGFALILML  177 (396)
T ss_pred             ccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHH
Confidence            6   55665555553  999999987766665543

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.67  E-value=3.7e-07  Score=90.27  Aligned_cols=73  Identities=14%  Similarity=0.037  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhh
Q 048319            4 LLWADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIG   77 (348)
Q Consensus         4 ~e~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~   77 (348)
                      .-++-.++++.. ..+..|+++++|++..+.+.+.+.+.....+.+++.|+++|| +||||+++++..+..++..
T Consensus        18 ~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr-~g~r~~~~~~~~~~~~~~~   91 (420)
T PRK09528         18 FFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDK-LGLKKHLLWIISGLLVLFG   91 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHH
Confidence            345566777777 889999999999999999999999999999999999999999 5999999887776665544

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.67  E-value=8.9e-07  Score=86.37  Aligned_cols=137  Identities=13%  Similarity=0.007  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcc
Q 048319            4 LLWADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMS   82 (348)
Q Consensus         4 ~e~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s   82 (348)
                      ..+...+++..+ ..+-.|+. ++|.+..+++.+.+.+.....+.+++.|+++|| +||||.+..+.++..++..+...+
T Consensus        14 ~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr-~g~k~~~~~~~~~~~~~~~~~~~~   91 (381)
T PRK03633         14 GLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKR-IGFNRSYYLASLIFAAGCAGLGLM   91 (381)
T ss_pred             HHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456677777666 66666665 689999999999999999999999999999999 599999999999999988776653


Q ss_pred             cCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh
Q 048319           83 TPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP  162 (348)
Q Consensus        83 ~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in  162 (348)
                      .                      +...++++..+.++|.|...|...+...|..+++      +|   .+.++++....|
T Consensus        92 ~----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~---~~~~~~~~~~~~  140 (381)
T PRK03633         92 V----------------------GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSR------NR---GRLLAAYMMVYY  140 (381)
T ss_pred             c----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH------HH---HHHHHHHHHHHH
Confidence            1                      3566777888999999988887777776665432      13   556777777777


Q ss_pred             ---hhcchhhcccc
Q 048319          163 ---VAAIIPISYIK  173 (348)
Q Consensus       163 ---~~~~~~~~yi~  173 (348)
                         .+++.+.+++.
T Consensus       141 ~g~~~g~~~~~~l~  154 (381)
T PRK03633        141 LGTVLGQLLVSKVS  154 (381)
T ss_pred             HHHHHHHHHHhccc
Confidence               66666666554

>TIGR00901 2A0125 AmpG-related permease

Probab=98.67  E-value=8.2e-07  Score=85.43  Aligned_cols=149  Identities=16%  Similarity=0.102  Sum_probs=97.5

Q ss_pred             HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhh----ccchHHH-HHHHHHHhhhhhhhhcccCCccCCC
Q 048319           16 WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTI----ISKYWML-VFSSLAYSVGIGLLTMSTPPVLAGF   90 (348)
Q Consensus        16 ~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~----lGr~~ti-~~~~~i~~~G~~ll~~s~~p~~~~~   90 (348)
                      ......+.+++|++.++.+.....  +..+...++.|.++||+    +||||.+ +.+.++..+....+.... +     
T Consensus         8 ~~~~~~~~~~~g~s~~~~g~~~~~--~~~~~~~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~-~-----   79 (356)
T TIGR00901         8 GNTLPYWLRSKNVSLKTIGFFSLV--GLPYSLKFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV-P-----   79 (356)
T ss_pred             HhHHHHHHHHcCCCHHHHHHHHHH--HHHHHHHHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC-c-----
Confidence            445555566789999998888544  34444578999999997    6999985 566666666655554321 1     


Q ss_pred             CCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcch
Q 048319           91 VGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAII  167 (348)
Q Consensus        91 ~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~  167 (348)
                                   ..+...++....+.+++.+...|...++..|.+++++      |   .....+...+.+   ++++.
T Consensus        80 -------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r---~~~~~~~~~~~~~G~~~~~~  137 (356)
T TIGR00901        80 -------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------L---GYGSTIYIVGYRAGMLLSGS  137 (356)
T ss_pred             -------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------h---chHHHHHHHHHHHHHHHHHH
Confidence                         1133444444456677888888999999998885432      3   445566555555   44444


Q ss_pred             hhcccc---c--------chhhHHHHHHHHHHHHHHHH
Q 048319          168 PISYIK---P--------WNLRFGVSAICTVIATLLFL  194 (348)
Q Consensus       168 ~~~yi~---g--------~~~~F~i~~~~~~i~~~vf~  194 (348)
                      +..++.   |        |+..|.+.++..+++.++.+
T Consensus       138 l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~  175 (356)
T TIGR00901       138 LALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTL  175 (356)
T ss_pred             HHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence            444332   5        99999999887777665444

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.67  E-value=5.2e-07  Score=86.09  Aligned_cols=150  Identities=14%  Similarity=0.048  Sum_probs=107.5

Q ss_pred             HHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccC
Q 048319           10 LAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLA   88 (348)
Q Consensus        10 ~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~   88 (348)
                      +++... ..+..|. +.+|.+..+++.+...+.....+..+++|+++|| +||++++.++.++..++.+++.....    
T Consensus       219 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~----  292 (377)
T TIGR00890       219 VSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDK-IGRQKTMSIVFGISAVGMAAMLFIPM----  292 (377)
T ss_pred             HHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHHHHccc----
Confidence            344444 4444554 4588999888888888888888999999999999 59999999999999888877654311    


Q ss_pred             CCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhc
Q 048319           89 GFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAA  165 (348)
Q Consensus        89 ~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~  165 (348)
                                      .....++....+.+++.|..-+..+++..|.+++++      +   .+.+.+++...+   .++
T Consensus       293 ----------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~---~~~~g~~~~~~~~g~~~~  347 (377)
T TIGR00890       293 ----------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------S---AANYGFLYTAKAVAGIFG  347 (377)
T ss_pred             ----------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------h---hhHhHHHHHHHHHHHHHH
Confidence                            112234445566777888877777888888776543      3   456666666655   666


Q ss_pred             chhhcccc---cchhhHHHHHHHHHHHH
Q 048319          166 IIPISYIK---PWNLRFGVSAICTVIAT  190 (348)
Q Consensus       166 ~~~~~yi~---g~~~~F~i~~~~~~i~~  190 (348)
                      +.+.+++.   ||+..|.+.++..++++
T Consensus       348 ~~~~g~l~~~~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       348 GLIASHALTEIGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             HHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence            66666553   99999998887777654

>TIGR00898 2A0119 cation transport protein

Probab=98.67  E-value=2.8e-07  Score=93.08  Aligned_cols=140  Identities=18%  Similarity=0.158  Sum_probs=104.8

Q ss_pred             hhhhhCCc---hHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCC
Q 048319           22 LTEVWKIS---VVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYK   98 (348)
Q Consensus        22 l~~~l~~~---~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~   98 (348)
                      +.+++|++   ..+++.+.+.+.....+..++.|+++|| +|||+.++++.++..++.++..++.               
T Consensus       115 i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr-~Grr~~~~~~~~~~~i~~~~~~~~~---------------  178 (505)
T TIGR00898       115 IVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDR-FGRKKVLLLSTLVTAVSGVLTAFSP---------------  178 (505)
T ss_pred             EEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhh-ccchHHHHHHHHHHHHHHHHHHHcc---------------
Confidence            34568888   8889999999999999999999999999 6999999999999998887766531               


Q ss_pred             CcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhcccccc
Q 048319           99 PECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYIKPW  175 (348)
Q Consensus        99 ~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi~g~  175 (348)
                             +...+++...+.++|.|+.-+...++..|.++++.      |   .....++..+.+   ++++.+..++.+|
T Consensus       179 -------~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r---~~~~~~~~~~~~~g~~~~~~~~~~~~~w  242 (505)
T TIGR00898       179 -------NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------R---AIVGTLIQVFFSLGLVLLPLVAYFIPDW  242 (505)
T ss_pred             -------cHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------h---HHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence                   35678888899999999999999999998876532      2   233333322222   4444443344489


Q ss_pred             hhhHHHHHHHHHHHHHHH
Q 048319          176 NLRFGVSAICTVIATLLF  193 (348)
Q Consensus       176 ~~~F~i~~~~~~i~~~vf  193 (348)
                      ++.|.+.++..++..+..
T Consensus       243 r~~~~~~~i~~~~~~~~~  260 (505)
T TIGR00898       243 RWLQLAVSLPTFLFFLLS  260 (505)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999998777666554433

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.66  E-value=3.6e-07  Score=91.03  Aligned_cols=144  Identities=13%  Similarity=0.065  Sum_probs=107.0

Q ss_pred             HHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCC
Q 048319           19 MEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYK   98 (348)
Q Consensus        19 ~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~   98 (348)
                      ..|+++ +|.+..+.+.+.+.+.....+..+++|+++|| +||++.+.++.++..++.+++...  |..           
T Consensus        50 ~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~--~~~-----------  114 (438)
T TIGR00712        50 MPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILSAAVMLLMGFV--PWA-----------  114 (438)
T ss_pred             hHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhc-cCCceehHHHHHHHHHHHHHHhcc--ccc-----------
Confidence            455665 59999999999999999999999999999999 599999999999999888776543  111           


Q ss_pred             CcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhcc-cc-
Q 048319           99 PECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISY-IK-  173 (348)
Q Consensus        99 ~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~y-i~-  173 (348)
                           ......+++...+.+++.|..-|.......|.+++++      |   ...+++++...+   .+++.+... +. 
T Consensus       115 -----~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------r---g~~~~~~~~~~~~g~~~~~~l~~~~~~~  180 (438)
T TIGR00712       115 -----TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------R---GTIVSIWNCAHNIGGGIPPLLVLLGMAW  180 (438)
T ss_pred             -----cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------c---hhHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence                 0124456677778899999988888888888776432      3   557777777666   444433332 32 


Q ss_pred             --cchhhHHHHHHHHHHHHH
Q 048319          174 --PWNLRFGVSAICTVIATL  191 (348)
Q Consensus       174 --g~~~~F~i~~~~~~i~~~  191 (348)
                        ||+.+|.+.++..++..+
T Consensus       181 ~~~w~~~f~~~~~~~~i~~~  200 (438)
T TIGR00712       181 FNDWHAALYFPAICAIIVAL  200 (438)
T ss_pred             hhhhHHHHHHHHHHHHHHHH
Confidence              899999997777665443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.66  E-value=4.6e-07  Score=88.61  Aligned_cols=163  Identities=12%  Similarity=0.032  Sum_probs=110.0

Q ss_pred             HHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCcc
Q 048319            9 CLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVL   87 (348)
Q Consensus         9 r~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~   87 (348)
                      .++++++ ..+..|+.+ .|++  .++.....+.....+..++.|+++|| +||+|.+.++..+..++.+++....    
T Consensus       229 ~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~----  300 (399)
T PRK05122        229 SIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINR-LGGLRVAIVSLLVEILGLLLLWLAP----  300 (399)
T ss_pred             HHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHhc----
Confidence            3455556 666667654 4553  34455556666667778899999999 5999999999888888877766531    


Q ss_pred             CCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hh
Q 048319           88 AGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VA  164 (348)
Q Consensus        88 ~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~  164 (348)
                                        +...++++..+.++|.|..-|.......|.+++    |  ++   .+.+.+++...+   .+
T Consensus       301 ------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~----~--~~---g~~~g~~~~~~~~g~~~  353 (399)
T PRK05122        301 ------------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPP----Q--NR---GAALGAYSVFLDLSLGI  353 (399)
T ss_pred             ------------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCH----H--HH---HHHHHHHHHHHHHHHHH
Confidence                              134456677788888888777766666654432    2  23   567777776666   44


Q ss_pred             cchhhcccc---cchhhHHHHHHHHHHHHHHHHhcCcccccCCCC
Q 048319          165 AIIPISYIK---PWNLRFGVSAICTVIATLLFLSGTCTYENKEPE  206 (348)
Q Consensus       165 ~~~~~~yi~---g~~~~F~i~~~~~~i~~~vf~~g~~~y~~~~p~  206 (348)
                      ++.+.+++-   ||+..|.+.++..+++++....-+++.+++.|+
T Consensus       354 ~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (399)
T PRK05122        354 TGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRAPRAVPE  398 (399)
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcccccccCCC
Confidence            555555553   999999998888888777666555555555443

>PRK03699 putative transporter; Provisional

Probab=98.61  E-value=5.7e-07  Score=88.25  Aligned_cols=153  Identities=16%  Similarity=0.082  Sum_probs=108.9

Q ss_pred             HHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccC
Q 048319            6 WADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTP   84 (348)
Q Consensus         6 ~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~   84 (348)
                      ++.-++++++ ..+..|+++.+|++..+++.+...+.....+..+++|+++|| +||++.+..+..+..++..++.... 
T Consensus       215 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~l~~~~~~~~~~~~~~~~~~-  292 (394)
T PRK03699        215 LLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRF-FDLQRILTVLAGLALVLMYLFVNTD-  292 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHH-hchhhHHHHHHHHHHHHHHHHHHcC-
Confidence            4455677888 878899998999999999999999988899999999999999 5999999888877776655554321 


Q ss_pred             CccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh--
Q 048319           85 PVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP--  162 (348)
Q Consensus        85 p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in--  162 (348)
                                           +.....+...+.+++.++.-|...+.+.++.+++.          ....++.+.+.+  
T Consensus       293 ---------------------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~----------~~~~g~~~~~~~~g  341 (394)
T PRK03699        293 ---------------------DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVAS----------PKLVNFILTCGTIG  341 (394)
T ss_pred             ---------------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC----------HHHHHHHHHhhhHH
Confidence                                 12233445556677777777777777777665332          122344444444  


Q ss_pred             -hhcchhhcccc---cchhhHHHHHHHHHHHHH
Q 048319          163 -VAAIIPISYIK---PWNLRFGVSAICTVIATL  191 (348)
Q Consensus       163 -~~~~~~~~yi~---g~~~~F~i~~~~~~i~~~  191 (348)
                       .+++.+.+++-   ||..+|.+.++.++++.+
T Consensus       342 ~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~  374 (394)
T PRK03699        342 TMLTFVVTSPIVAHFGLQAALLTANGLYAVVFV  374 (394)
T ss_pred             HHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHH
Confidence             67777777664   888888876666665543

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.60  E-value=2e-06  Score=84.35  Aligned_cols=159  Identities=14%  Similarity=0.136  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHH-HHHHhhhHHHHHhhhccchHHHH-HHHHHHhhhhhhh
Q 048319            3 ALLWADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGL-VLVLQLPMQYLVDTIISKYWMLV-FSSLAYSVGIGLL   79 (348)
Q Consensus         3 ~~e~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~-~~~~pl~gg~lAD~~lGr~~ti~-~~~~i~~~G~~ll   79 (348)
                      +..++-+++..-+ ..+..|+.+++|.+.++.+.+++..... ..+.+++|++ +||+ ||||.++ .+.++..++..++
T Consensus        22 ~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~~~~~~~~~   99 (393)
T PRK15011         22 IVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLLGVLACTLF   99 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHHHHHHHHHH
Confidence            3467778887777 8889999999999999999987765554 4455666777 9995 9988865 4445545555544


Q ss_pred             hcccCCccCCCCCCCCCCCCcccccchhHHH-HHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHH-HHH
Q 048319           80 TMSTPPVLAGFVGTCSEYKPECIVKGHKILF-YAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFF-KLL  157 (348)
Q Consensus        80 ~~s~~p~~~~~~~~c~~~~~~c~~~~~~~~~-~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f-~~~  157 (348)
                      ..+.                      +...+ ..++.+-+.+ +...|...+...|..+++   +|  .   ...+ .+.
T Consensus       100 ~~~~----------------------~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~--~---~~~~~~~~  148 (393)
T PRK15011        100 AWNR----------------------NYFVLLFVGVFLSSFG-STANPQMFALAREHADKT---GR--E---AVMFSSFL  148 (393)
T ss_pred             HHhh----------------------HHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHhhhc---cc--h---HHHHHHHH
Confidence            4321                      12333 3333333333 344566666665544322   11  1   2233 455


Q ss_pred             HHHHh---hhcchhhcccc---cchhhHHHHHHHHHHHHHHHH
Q 048319          158 LFMVP---VAAIIPISYIK---PWNLRFGVSAICTVIATLLFL  194 (348)
Q Consensus       158 y~~in---~~~~~~~~yi~---g~~~~F~i~~~~~~i~~~vf~  194 (348)
                      ..+.+   .+++.+.+++.   ||+..|.+.++..++..+..+
T Consensus       149 ~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~  191 (393)
T PRK15011        149 RAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVW  191 (393)
T ss_pred             HHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence            55666   66776666663   999999988776655544443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.60  E-value=5.7e-07  Score=90.37  Aligned_cols=144  Identities=13%  Similarity=0.058  Sum_probs=101.0

Q ss_pred             HHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCC
Q 048319           19 MEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYK   98 (348)
Q Consensus        19 ~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~   98 (348)
                      ...+.+.+|.+.++++.+.+.+....++..+++|+++|| +|||++++.+.++..++.+++..+.               
T Consensus        42 ~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~---------------  105 (455)
T TIGR00892        42 FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNR-FGCRPVVIAGGLLASLGMILASFSS---------------  105 (455)
T ss_pred             HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHH-cCchHHHHhhHHHHHHHHHHHHHhh---------------
Confidence            344557899999999999999988888888899999999 5999999999999888887765531               


Q ss_pred             CcccccchhHHHHHHH-HHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhcccc-
Q 048319           99 PECIVKGHKILFYAAL-GLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYIK-  173 (348)
Q Consensus        99 ~~c~~~~~~~~~~~~L-~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi~-  173 (348)
                             +...+++.. .+.++|.|..-+...+...+-++    ++   |   .+...+++.+.+   .+++.+.+++- 
T Consensus       106 -------~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~----~~---r---~~a~g~~~~~~~~g~~~~~~l~~~l~~  168 (455)
T TIGR00892       106 -------NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY----RR---R---PLANGLAMAGSPVFLSTLAPLNQYLFE  168 (455)
T ss_pred             -------hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH----hh---H---HHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence                   123344333 56688888654544556666553    11   3   455666666665   44444444443 


Q ss_pred             --cchhhHHHHHHHHHHHHHHHHh
Q 048319          174 --PWNLRFGVSAICTVIATLLFLS  195 (348)
Q Consensus       174 --g~~~~F~i~~~~~~i~~~vf~~  195 (348)
                        ||++.|.+.++..+++.+..+.
T Consensus       169 ~~gwr~~f~~~~~~~~~~~v~~~~  192 (455)
T TIGR00892       169 SFGWRGSFLILGGLLLHCCVCGAL  192 (455)
T ss_pred             HhChHHHHHHHHHHHHHHHHHHHH
Confidence              9999999988877765544433

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.59  E-value=7e-07  Score=88.17  Aligned_cols=167  Identities=16%  Similarity=0.210  Sum_probs=109.0

Q ss_pred             HHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhh---ccchHH-HHHHHHHHhhhhhhhh
Q 048319            6 WADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTI---ISKYWM-LVFSSLAYSVGIGLLT   80 (348)
Q Consensus         6 ~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~---lGr~~t-i~~~~~i~~~G~~ll~   80 (348)
                      +...+.+.-+ ..+..|+++.+|++.+.++.+........-+..++.|+++||.   +||||. ++++.....++.+++.
T Consensus         9 ~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~   88 (437)
T TIGR00792         9 FGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF   88 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH
Confidence            3444555555 6788899999999999999999999999999999999999984   799764 6677788887777765


Q ss_pred             cccCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHH
Q 048319           81 MSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFM  160 (348)
Q Consensus        81 ~s~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~  160 (348)
                      ..  |...              ...+...+++...+..++.+...+...++.+|..+  |++||      .+...+....
T Consensus        89 ~~--~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~--~~~~R------~~~~~~~~~~  144 (437)
T TIGR00792        89 TT--PDFS--------------ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITL--DPRER------ESLSTFRRFG  144 (437)
T ss_pred             hC--CCCC--------------cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccC--CHHHH------HHHHHHHHHH
Confidence            43  2110              01123444445556677777777777788777654  34443      3344444443


Q ss_pred             Hh---hhcchh----hccc-----c-cchhhHHHHHHHHHHHHHHHHhc
Q 048319          161 VP---VAAIIP----ISYI-----K-PWNLRFGVSAICTVIATLLFLSG  196 (348)
Q Consensus       161 in---~~~~~~----~~yi-----~-g~~~~F~i~~~~~~i~~~vf~~g  196 (348)
                      .+   +++..+    ...+     . ||+..|.+.++..++..++....
T Consensus       145 ~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~  193 (437)
T TIGR00792       145 ATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFG  193 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcC
Confidence            33   222111    1111     1 89998888777666655544433

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00897 2A0118 polyol permease family

Probab=98.59  E-value=3e-06  Score=83.45  Aligned_cols=125  Identities=7%  Similarity=0.019  Sum_probs=87.4

Q ss_pred             HHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCcc
Q 048319            9 CLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVL   87 (348)
Q Consensus         9 r~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~   87 (348)
                      -++++.. ..+..|+ +++|.+..+++.+.+.+.....+..+++|.++|| +||||.+..+..+..++.+++...+..  
T Consensus        26 ~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr-~g~k~~l~~~~~~~~~~~~~~~~~~~~--  101 (402)
T TIGR00897        26 MTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEI-IGPLKTMMIGLLLWCVGHAAFIVFGLG--  101 (402)
T ss_pred             HHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence            3344434 4455666 5689999999999999999999999999999999 599999999999998887654322110  


Q ss_pred             CCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh
Q 048319           88 AGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP  162 (348)
Q Consensus        88 ~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in  162 (348)
                                      ..+...+++...+.++|.+..-+...+...+.++++   |   |   .+...++..+.+
T Consensus       102 ----------------~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~---~---~---g~~~g~~~~~~~  151 (402)
T TIGR00897       102 ----------------HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQD---N---L---SSAVGWFWAVYS  151 (402)
T ss_pred             ----------------CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHH---H---H---HHHHHHHHHHHH
Confidence                            012345555666678887776666666666655432   2   3   556666666666

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.59  E-value=1.8e-06  Score=81.20  Aligned_cols=159  Identities=19%  Similarity=0.170  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchH-HHHHHHHHHhhhhhhhhc
Q 048319            4 LLWADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYW-MLVFSSLAYSVGIGLLTM   81 (348)
Q Consensus         4 ~e~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~-ti~~~~~i~~~G~~ll~~   81 (348)
                      ..++...++.+. ..+..|+.+.+|.+..+++.+.........+..++.++++|| +||++ .+.++..+..++.+++..
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~  261 (352)
T cd06174         183 AFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDR-LGRRRLLLLIGLLLAALGLLLLAL  261 (352)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHH
Confidence            345566667777 777778877779999999999999999999999999999999 59999 999999999998887765


Q ss_pred             ccCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHH
Q 048319           82 STPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMV  161 (348)
Q Consensus        82 s~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~i  161 (348)
                      ..                      +....++...+.+++.+...+...++..|.+++++      +   .+.+..+....
T Consensus       262 ~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~~~  310 (352)
T cd06174         262 AP----------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------R---GTASGLFNTFG  310 (352)
T ss_pred             hc----------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------H---HHHHHHHHHHH
Confidence            31                      24567778889999999999999999998877532      3   55666666665


Q ss_pred             h---hhcchhhcccc---cchhhHHHHHHHHHHHHHHHH
Q 048319          162 P---VAAIIPISYIK---PWNLRFGVSAICTVIATLLFL  194 (348)
Q Consensus       162 n---~~~~~~~~yi~---g~~~~F~i~~~~~~i~~~vf~  194 (348)
                      +   .+++.+.+++.   ||+..|.+.++..+++.++..
T Consensus       311 ~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         311 SLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             HHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence            5   66666666553   999999998888887776543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.57  E-value=7.7e-07  Score=90.15  Aligned_cols=170  Identities=15%  Similarity=0.078  Sum_probs=116.3

Q ss_pred             HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhh---hccchHHHHHH-HHHHhhhhhhhhcccCCc--cCC
Q 048319           16 WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDT---IISKYWMLVFS-SLAYSVGIGLLTMSTPPV--LAG   89 (348)
Q Consensus        16 ~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~---~lGr~~ti~~~-~~i~~~G~~ll~~s~~p~--~~~   89 (348)
                      +++..|+ +.+|.+...++.+..+-.....+...+.|+++||   .+||||..+++ .+...+++.++..+....  +.+
T Consensus        25 ~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~  103 (477)
T TIGR01301        25 SLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGD  103 (477)
T ss_pred             HHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccc
Confidence            5555565 5799999999999999999999999999999996   57999998875 666666666665542210  000


Q ss_pred             CCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcc
Q 048319           90 FVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAI  166 (348)
Q Consensus        90 ~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~  166 (348)
                         .-++  . . .......+.+++.+.-++.+...+...++++|..++++.    ++   +..+.|+.+.+|   .++.
T Consensus       104 ---~~~~--~-~-~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~----~~---~~a~~~~~~~~~lG~ilg~  169 (477)
T TIGR01301       104 ---NLDK--K-T-KPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDAR----RT---RIANAYFSFFMAIGNVLGY  169 (477)
T ss_pred             ---cccc--c-c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhH----HH---HHHHHHHHHHHHHHHHHHH
Confidence               0000  0 0 011123556667777788888888889999999986642    23   457777777777   4443


Q ss_pred             hhhccc--------------c----cchhhHHHHHHHHHHHHHHHHhcCccc
Q 048319          167 IPISYI--------------K----PWNLRFGVSAICTVIATLLFLSGTCTY  200 (348)
Q Consensus       167 ~~~~yi--------------~----g~~~~F~i~~~~~~i~~~vf~~g~~~y  200 (348)
                      .+.++.              +    +++..|.+.++.++++.++-+...|++
T Consensus       170 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~  221 (477)
T TIGR01301       170 AAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKEN  221 (477)
T ss_pred             HHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence            322221              1    678899999999998888777665554

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.53  E-value=3.2e-06  Score=83.08  Aligned_cols=157  Identities=9%  Similarity=0.014  Sum_probs=115.2

Q ss_pred             HHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccC
Q 048319            6 WADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTP   84 (348)
Q Consensus         6 ~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~   84 (348)
                      ++..++|+++ ..+..|+.+ .|.+..+++.....+.....+..+++|+++|| +||++.+.++..+..++..++...  
T Consensus       215 ~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r-~~~~~~~~~~~~l~~~~~~~~~~~--  290 (393)
T PRK09705        215 GLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARH-QDRRKLLMLALVLQLVGFCGFIWL--  290 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHHc--
Confidence            4556788888 778888876 79999999999999999999999999999999 699999999988888887655432  


Q ss_pred             CccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh--
Q 048319           85 PVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP--  162 (348)
Q Consensus        85 p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in--  162 (348)
                      |.                   ......  ..+.++|.|+.-|+......|+++++   |  .+   .+.+++.+...+  
T Consensus       291 ~~-------------------~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~---~--~~---g~~~g~~~~~~~~~  341 (393)
T PRK09705        291 PL-------------------QLPVLW--AMVCGLGLGGAFPLCLLLALDHSVQP---A--IA---GKLVAFMQGIGFII  341 (393)
T ss_pred             cc-------------------hHHHHH--HHHHHHhccchHHHHHHHHHhhcCCH---H--HH---HHHHHHHHHHHHHH
Confidence            10                   111121  23567788888887777777766422   1  13   557777777777  


Q ss_pred             -hhcchhhcccc----cchhhHHHHHHHHHHHHHHHHh
Q 048319          163 -VAAIIPISYIK----PWNLRFGVSAICTVIATLLFLS  195 (348)
Q Consensus       163 -~~~~~~~~yi~----g~~~~F~i~~~~~~i~~~vf~~  195 (348)
                       .+++.+.+++.    +|..+|.+.+++.+++.+..+.
T Consensus       342 ~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  379 (393)
T PRK09705        342 AGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLR  379 (393)
T ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence             56777777764    5899999888777776665443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.52  E-value=6.9e-07  Score=89.50  Aligned_cols=137  Identities=15%  Similarity=0.094  Sum_probs=105.4

Q ss_pred             hhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCCccccc
Q 048319           25 VWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECIVK  104 (348)
Q Consensus        25 ~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~~c~~~  104 (348)
                      ++|++..+.+.+.+.+.....+..+++|+++|| +|||+.+.++.++..++.++...+..                    
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~--------------------  128 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGK-YVFKWSIGIGMFLSSVISIVIPWAAG--------------------  128 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHH-hCcchhhHHHHHHHHHHHHHHHHHHH--------------------
Confidence            578999999999999999999999999999999 59999999999998888776543211                    


Q ss_pred             chhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhcccc----cchh
Q 048319          105 GHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYIK----PWNL  177 (348)
Q Consensus       105 ~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi~----g~~~  177 (348)
                      .....+++...+.++|.|..-|......+|-+++++      |   .+...+++.+.+   .+++.+.+++.    ||+.
T Consensus       129 ~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r---~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~  199 (465)
T TIGR00894       129 GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------R---SRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPM  199 (465)
T ss_pred             cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------H---HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCe
Confidence            123457777889999999999999999997775432      3   556777777666   56666655552    8999


Q ss_pred             hHHHHHHHHHHHHH
Q 048319          178 RFGVSAICTVIATL  191 (348)
Q Consensus       178 ~F~i~~~~~~i~~~  191 (348)
                      .|.+.++..++..+
T Consensus       200 ~f~i~~~~~~~~~~  213 (465)
T TIGR00894       200 IFYVFGIVGCAWSL  213 (465)
T ss_pred             ehhhhhHHHHHHHH
Confidence            99988776554443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.51  E-value=2.8e-06  Score=86.08  Aligned_cols=150  Identities=13%  Similarity=0.005  Sum_probs=92.5

Q ss_pred             HHHHHHhhhhhCCchHHH-HHH-----HHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCC
Q 048319           16 WTMMEYLTEVWKISVVHA-AGI-----VNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAG   89 (348)
Q Consensus        16 ~~L~~Yl~~~l~~~~~~A-~~i-----~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~   89 (348)
                      +....++.+.++.+.... +.+     .+......-+.+++.|+++||+ ||||++.++.+++.++.++..++.  +...
T Consensus        36 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~~~~l~~i~~~~~a~~~--~~~~  112 (490)
T PRK10642         36 GFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAITIVIMSISTFCIGLIP--SYAT  112 (490)
T ss_pred             HHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHhcc--cHHH
Confidence            444456666665333221 111     2333334456788999999995 999999999999999998877652  1000


Q ss_pred             CCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcc
Q 048319           90 FVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAI  166 (348)
Q Consensus        90 ~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~  166 (348)
                          -        .-.....+.+...+.++|.|+.-|+..++.+|.++++.      |   .....+...+.+   .++.
T Consensus       113 ----~--------g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~------R---g~~~~~~~~~~~~G~~lg~  171 (490)
T PRK10642        113 ----I--------GIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK------R---GFMGSWLDFGSIAGFVLGA  171 (490)
T ss_pred             ----H--------HHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC------C---cHHHHHHHHHHHHHHHHHH
Confidence                0        00011246778889999999999999999998876432      2   334444444333   3333


Q ss_pred             hhh----ccc------c-cchhhHHHHHHHHHHH
Q 048319          167 IPI----SYI------K-PWNLRFGVSAICTVIA  189 (348)
Q Consensus       167 ~~~----~yi------~-g~~~~F~i~~~~~~i~  189 (348)
                      .+.    .++      . ||++.|.+.++..+++
T Consensus       172 ~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~  205 (490)
T PRK10642        172 GVVVLISTIVGEANFLDWGWRIPFFIALPLGIIG  205 (490)
T ss_pred             HHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHH
Confidence            221    111      2 9999999976544433

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.50  E-value=3.2e-06  Score=85.88  Aligned_cols=148  Identities=14%  Similarity=0.068  Sum_probs=102.2

Q ss_pred             CCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCCcccccch
Q 048319           27 KISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECIVKGH  106 (348)
Q Consensus        27 ~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~~c~~~~~  106 (348)
                      +.+..+.+.+...+.....+..++.|+++||+ |||+++.++.+++.++.++..++..  ..+              ..+
T Consensus        52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~~~~~~~v~~~~~~~~~~--~~~--------------~~~  114 (502)
T TIGR00887        52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGMELIIMIIATVASGLSPG--SSP--------------KSV  114 (502)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHccC--ccc--------------chH
Confidence            44556667788888888889999999999995 9999999999999999877665421  000              012


Q ss_pred             hHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhc-------------
Q 048319          107 KILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPIS-------------  170 (348)
Q Consensus       107 ~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~-------------  170 (348)
                      ...++++..+.++|.|+.-|....+.+|.++.+.      |   .+..++++...+   +++..+..             
T Consensus       115 ~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------R---g~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~  185 (502)
T TIGR00887       115 MATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------R---GAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAA  185 (502)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            4678889999999999999999999998887543      3   445555555544   33332211             


Q ss_pred             ------------ccc-cchhhHHHHHHHHHHHHHH--HHhcCccc
Q 048319          171 ------------YIK-PWNLRFGVSAICTVIATLL--FLSGTCTY  200 (348)
Q Consensus       171 ------------yi~-g~~~~F~i~~~~~~i~~~v--f~~g~~~y  200 (348)
                                  ..+ +|++.|.+.++..++..+.  ++-.+|+|
T Consensus       186 ~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~  230 (502)
T TIGR00887       186 ADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRY  230 (502)
T ss_pred             cccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence                        113 7999998776655544332  23344444

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.50  E-value=2.9e-06  Score=94.13  Aligned_cols=139  Identities=18%  Similarity=0.092  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHhH-HHHHHHhhhhhCCch--HHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhh
Q 048319            4 LLWADCLAQFVM-WTMMEYLTEVWKISV--VHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLT   80 (348)
Q Consensus         4 ~e~~Er~a~yg~-~~L~~Yl~~~l~~~~--~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~   80 (348)
                      ..+...++..++ ..+..++...++.+.  ...+.+.+++.....++++++|+++||+ ||||+++++.++.+++.++..
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~~~~~~~~~~   95 (1146)
T PRK08633         17 TQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLFEVGLTLLIV   95 (1146)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555 556666666566554  3357777888888889999999999995 999999999888777766655


Q ss_pred             cccCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHH
Q 048319           81 MSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFM  160 (348)
Q Consensus        81 ~s~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~  160 (348)
                      +...                   ..+...++++..+.+++.|..-|...++++|.+++++      +   ...++++..+
T Consensus        96 ~~~~-------------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r---~~~~~~~~~~  147 (1146)
T PRK08633         96 LAYY-------------------LGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------L---SRANGLLEAF  147 (1146)
T ss_pred             HHHH-------------------HccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------c---hhhhhHHHHH
Confidence            4321                   0135678888889999999999999999999887542      3   5567777776


Q ss_pred             Hh---hhcchhhcc
Q 048319          161 VP---VAAIIPISY  171 (348)
Q Consensus       161 in---~~~~~~~~y  171 (348)
                      .+   ++++.+.++
T Consensus       148 ~~ig~~lg~~l~~~  161 (1146)
T PRK08633        148 TIVAILAGTALFSF  161 (1146)
T ss_pred             HHHHHHHHHHHHHH
Confidence            66   455444443

>PRK09952 shikimate transporter; Provisional

Probab=98.50  E-value=3.4e-06  Score=84.29  Aligned_cols=164  Identities=10%  Similarity=0.047  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcc
Q 048319            4 LLWADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMS   82 (348)
Q Consensus         4 ~e~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s   82 (348)
                      ..++.-+++|++ ..+..|+++.+|++......+.........+..+++|+++|| +||+|++.++.++..++...+...
T Consensus       258 ~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~  336 (438)
T PRK09952        258 LRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADR-FGRRRVYITGALIGTLSAFPFFMA  336 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHH
Confidence            345667788888 878889988899998766555555555566677789999999 599999998877665554333321


Q ss_pred             cCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh
Q 048319           83 TPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP  162 (348)
Q Consensus        83 ~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in  162 (348)
                      ...                  ......+.+.+.+.+++.|...+...++.+|.++.+.      |   .+...+-|...+
T Consensus       337 ~~~------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~------r---~tg~g~~~~~~~  389 (438)
T PRK09952        337 LEA------------------QSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY------R---YSGAGVGYQVAS  389 (438)
T ss_pred             HHc------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch------h---HHHHhHHHHHHH
Confidence            100                  0112333445556678888878888899998887532      3   345555443333


Q ss_pred             ----hhcchhhccc-c----cchhhHHHHHHHHHHHHHHHHh
Q 048319          163 ----VAAIIPISYI-K----PWNLRFGVSAICTVIATLLFLS  195 (348)
Q Consensus       163 ----~~~~~~~~yi-~----g~~~~F~i~~~~~~i~~~vf~~  195 (348)
                          .+++.++.++ +    +|...|.+.+++.+++.+..+.
T Consensus       390 ~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~  431 (438)
T PRK09952        390 VVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL  431 (438)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence                4555555554 2    4777787777766666555443

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.48  E-value=3.2e-06  Score=81.25  Aligned_cols=146  Identities=12%  Similarity=0.038  Sum_probs=100.2

Q ss_pred             HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCC
Q 048319           16 WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCS   95 (348)
Q Consensus        16 ~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~   95 (348)
                      ..+..|+++.+|.++.+++.+.....+......+++|+++|| +||++.+.++.++..+++.++....            
T Consensus       220 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~------------  286 (375)
T TIGR00899       220 INMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKR-FGKRRLMLLAALAGVAFYTGLAADN------------  286 (375)
T ss_pred             hhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchhHHHHHHHHHHHHHHHHHHHH------------
Confidence            456678888899999999888777666666677899999999 5999999888776665554433220            


Q ss_pred             CCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhccc
Q 048319           96 EYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYI  172 (348)
Q Consensus        96 ~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi  172 (348)
                                +...++....+.+++.|..-|...+...|..++    +   +   .+.+..++...|   .+++.+.+++
T Consensus       287 ----------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~----~---~---~~~~~~~~~~~~~g~~~g~~~~g~~  346 (375)
T TIGR00899       287 ----------SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG----R---A---GAATTLYTNTGRVGWIIAGSVGGIL  346 (375)
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc----h---h---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      123344455566777776666666666655432    1   2   456666666666   6666666655


Q ss_pred             -c--cchhhHHHHHHHHHHHHHHHH
Q 048319          173 -K--PWNLRFGVSAICTVIATLLFL  194 (348)
Q Consensus       173 -~--g~~~~F~i~~~~~~i~~~vf~  194 (348)
                       +  ||+..|.+.++..+++.++..
T Consensus       347 ~~~~g~~~~~~~~~~~~~~~~~~~~  371 (375)
T TIGR00899       347 AERWSYHAVYWFAIVMLIVALFCLL  371 (375)
T ss_pred             HHhccchhHHHHHHHHHHHHHHHHh
Confidence             3  899999998888877776543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK15075 citrate-proton symporter; Provisional

Probab=98.47  E-value=3.4e-06  Score=83.91  Aligned_cols=155  Identities=10%  Similarity=0.048  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHhHHHHHHHhhhhhCCchHHHHHH-HHHHH-HHHH----HHhhhHHHHHhhhccchHHHHHHHHHHhhhh
Q 048319            3 ALLWADCLAQFVMWTMMEYLTEVWKISVVHAAGI-VNIFS-GLVL----VLQLPMQYLVDTIISKYWMLVFSSLAYSVGI   76 (348)
Q Consensus         3 ~~e~~Er~a~yg~~~L~~Yl~~~l~~~~~~A~~i-~~~~~-~~~~----~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~   76 (348)
                      +++..+|..+   ..+...+.++++.++.+-+.. .+... +..+    +..++.|+++|| +||||.+..+.+++.++.
T Consensus        25 ~~~~~d~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~  100 (434)
T PRK15075         25 FLEMFDFFLF---GFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDR-VGRRKGLIVTLSIMASGT  100 (434)
T ss_pred             HHHHHHHHHH---HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh-hchHHHHHHHHHHHHHHH
Confidence            3455555432   344456667888877664433 33322 2233    356788999999 599999999999999998


Q ss_pred             hhhhcccCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHH
Q 048319           77 GLLTMSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKL  156 (348)
Q Consensus        77 ~ll~~s~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~  156 (348)
                      ++..++..  ..-    -        .......++++..+.++|.|+.-|+...+.+|.+++++      |   .+...+
T Consensus       101 ~l~~~~~~--~~~----~--------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------r---g~~~~~  157 (434)
T PRK15075        101 LLIAFVPG--YAT----I--------GLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------K---GFYTSW  157 (434)
T ss_pred             HHHHhCCc--HHH----H--------HHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc------c---hHHHHH
Confidence            88876521  000    0        00001245677889999999999999999998886432      2   334444


Q ss_pred             HHHHHh---h----hcchhhcc-----cc--cchhhHHHHHH
Q 048319          157 LLFMVP---V----AAIIPISY-----IK--PWNLRFGVSAI  184 (348)
Q Consensus       157 ~y~~in---~----~~~~~~~y-----i~--g~~~~F~i~~~  184 (348)
                      +....|   .    ++..+...     ++  ||++.|.+..+
T Consensus       158 ~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~  199 (434)
T PRK15075        158 QSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL  199 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence            443333   2    22222111     12  99999997544

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.45  E-value=5.4e-06  Score=84.01  Aligned_cols=146  Identities=14%  Similarity=0.030  Sum_probs=92.1

Q ss_pred             HHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCC
Q 048319            7 ADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPP   85 (348)
Q Consensus         7 ~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p   85 (348)
                      +-.+.||++ ..+..|+.+.+|++...+............+..+++|+++|| +||++++.++.++..++...+..... 
T Consensus       261 ~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~-  338 (490)
T PRK10642        261 ATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDR-FGRRPFVILGSVALFVLAIPAFILIN-  338 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            345678888 888889988899998888777777666777888899999999 59999998887654443332221100 


Q ss_pred             ccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---
Q 048319           86 VLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---  162 (348)
Q Consensus        86 ~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---  162 (348)
                                        ......++++..+.+++.|+.-+...+...+.++.+.      |   .+...+.|-..+   
T Consensus       339 ------------------~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~------R---g~~~g~~~~~~~~~g  391 (490)
T PRK10642        339 ------------------SNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI------R---YSALAAAFNISVLVA  391 (490)
T ss_pred             ------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc------c---hHHHHHHHHHHHHHH
Confidence                              0123455666666666665555556667777665432      3   445555444444   


Q ss_pred             hhcchhhcccc----cchhhHHH
Q 048319          163 VAAIIPISYIK----PWNLRFGV  181 (348)
Q Consensus       163 ~~~~~~~~yi~----g~~~~F~i  181 (348)
                      .+++.+++++.    +|+..+.+
T Consensus       392 ~~~p~i~g~l~~~~~~~~~~~~~  414 (490)
T PRK10642        392 GLTPTLAAWLVESTQNLMMPAYY  414 (490)
T ss_pred             HHHHHHHHHHHHHhCCchHHHHH
Confidence            44555555542    45544443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.45  E-value=7.9e-07  Score=89.43  Aligned_cols=144  Identities=15%  Similarity=-0.051  Sum_probs=102.5

Q ss_pred             HHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCC
Q 048319           19 MEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYK   98 (348)
Q Consensus        19 ~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~   98 (348)
                      ...+.+++|.+..+.+.+.+.+....-+..+++|+++||+ ||||.+.++.++..++.+++......             
T Consensus        52 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~-------------  117 (467)
T PRK09556         52 QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLGS-------------  117 (467)
T ss_pred             hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHhc-------------
Confidence            3445568999999999999999888889999999999995 99999999888887776665542100             


Q ss_pred             CcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhccc---
Q 048319           99 PECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYI---  172 (348)
Q Consensus        99 ~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi---  172 (348)
                          ...+...+++...+.++|.|..-|......+|-+++++      |   .....++-.+.+   .+++.+..++   
T Consensus       118 ----~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r---g~a~gi~~~~~~lG~~l~~~i~~~~~~~  184 (467)
T PRK09556        118 ----GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------R---GRFLGFWNISHNLGGAGAGGVALWGANY  184 (467)
T ss_pred             ----ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------e---eeeEEeeecccchhhhHHHHHHHHHHHh
Confidence                01235677778888999999999999999998887543      2   334555544444   3443333322   


Q ss_pred             --c-cchhhHHHHHHHHHHH
Q 048319          173 --K-PWNLRFGVSAICTVIA  189 (348)
Q Consensus       173 --~-g~~~~F~i~~~~~~i~  189 (348)
                        . +|+..|.++++..++.
T Consensus       185 ~~~~~~~~~f~~~g~~~~~~  204 (467)
T PRK09556        185 FFDGHVIGMFIFPSIIALII  204 (467)
T ss_pred             hccCcchhHHHHHHHHHHHH
Confidence              2 5888888876655543

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.44  E-value=8.1e-06  Score=80.27  Aligned_cols=147  Identities=11%  Similarity=0.103  Sum_probs=97.7

Q ss_pred             HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhh----ccchH-HHHHHHHHHhhhhhhhhcccCCccCCC
Q 048319           16 WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTI----ISKYW-MLVFSSLAYSVGIGLLTMSTPPVLAGF   90 (348)
Q Consensus        16 ~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~----lGr~~-ti~~~~~i~~~G~~ll~~s~~p~~~~~   90 (348)
                      ..+..|+++ .|++.++-+.+.....  -+++..+.|.++||+    +|||| .+.++.++..+++.++.... +     
T Consensus        20 ~~~~~~l~~-~g~~~~~ig~~~~~~~--~~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~-~-----   90 (402)
T PRK11902         20 GTLQAWMTV-EGLDIQTIGFFSLVGQ--AYIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCP-P-----   90 (402)
T ss_pred             HHHHHHHHH-cCCCHHHHHHHHHHHH--HHHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcC-c-----
Confidence            567788886 5999999988855444  379999999999996    38887 57777777777777665531 0     


Q ss_pred             CCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcch
Q 048319           91 VGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAII  167 (348)
Q Consensus        91 ~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~  167 (348)
                                   ..+...+++...+.++..+...|...++..|.+++++      |   .++..+..++.+   .+++.
T Consensus        91 -------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r---~~~~~~~~~g~~~g~i~g~~  148 (402)
T PRK11902         91 -------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------R---GAGAAVKVLGYRLAMLVSGG  148 (402)
T ss_pred             -------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------h---hHHHHHHHHHHHHHHHHHhH
Confidence                         1234445555556678888899999999998865432      2   333333333333   44443


Q ss_pred             hhccc-c---cchhhHHHHHHHHHHHHHHH
Q 048319          168 PISYI-K---PWNLRFGVSAICTVIATLLF  193 (348)
Q Consensus       168 ~~~yi-~---g~~~~F~i~~~~~~i~~~vf  193 (348)
                      +..++ +   ||+..|.+.++..++..+..
T Consensus       149 l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~  178 (402)
T PRK11902        149 LALWLADRVLGWGNTYLLMAGLMLAGALTT  178 (402)
T ss_pred             HHHHHHhcccCHHHHHHHHHHHHHHHHHHH
Confidence            33332 2   89999999887766655443

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.41  E-value=6.8e-07  Score=93.77  Aligned_cols=171  Identities=13%  Similarity=0.125  Sum_probs=119.2

Q ss_pred             HhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccC--CccCC
Q 048319           13 FVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTP--PVLAG   89 (348)
Q Consensus        13 yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~--p~~~~   89 (348)
                      .|. ...+.-+.+.++++..+.+.+.+.+.....+..++.|+++|| .||+|.+.++.+++.+|.++.++...  ....+
T Consensus        49 ~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r-~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~  127 (633)
T TIGR00805        49 NGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTK-LHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSY  127 (633)
T ss_pred             HHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcc-cCcceEEEecHHHHHHHHHHHhChHHhcCCccc
Confidence            344 444555667899999999999999999999999999999999 59999999999999999999887542  00000


Q ss_pred             -------------CCCCCCCC----------CCcccc----cchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchh
Q 048319           90 -------------FVGTCSEY----------KPECIV----KGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINE  142 (348)
Q Consensus        90 -------------~~~~c~~~----------~~~c~~----~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~  142 (348)
                                   ...-|...          +..|.+    ......++++..+.++|.|..-+...+++.|-+++++  
T Consensus       128 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~--  205 (633)
T TIGR00805       128 STTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKN--  205 (633)
T ss_pred             cccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccc--
Confidence                         00123110          012331    1135567789999999999999999999998776542  


Q ss_pred             hhhhhhhhhhHHHHHHHHHh---hhcchhhcccc-------------------------cchhhHHHHHHHHHHHHHHH
Q 048319          143 HISLSLIQREFFKLLLFMVP---VAAIIPISYIK-------------------------PWNLRFGVSAICTVIATLLF  193 (348)
Q Consensus       143 e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi~-------------------------g~~~~F~i~~~~~~i~~~vf  193 (348)
                          +   ..++.+++.+.+   .+|+++.+++.                         +||++|.+.++..++..+.+
T Consensus       206 ----~---~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l  277 (633)
T TIGR00805       206 ----S---PLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPF  277 (633)
T ss_pred             ----c---HHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence                3   556777777766   44443332211                         38899998877666554433

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.41  E-value=4.7e-06  Score=81.53  Aligned_cols=107  Identities=20%  Similarity=0.200  Sum_probs=93.6

Q ss_pred             HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCC
Q 048319           16 WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCS   95 (348)
Q Consensus        16 ~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~   95 (348)
                      ..|+..+.+.++++..+|+.+-.+|-+.-.+.+++.|++.+| +|++++|++|..++.+|..++.=++            
T Consensus        33 diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk-~gyk~gi~lgL~l~avg~~lF~pAa------------   99 (422)
T COG0738          33 DILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKK-LGYKAGIVLGLLLYAVGAALFWPAA------------   99 (422)
T ss_pred             hhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHH-hhhHHHHHHHHHHHHHHHHHHhhhh------------
Confidence            457777888999999999999999999999999999999999 5999999999999999999886432            


Q ss_pred             CCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchh
Q 048319           96 EYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINE  142 (348)
Q Consensus        96 ~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~  142 (348)
                             +......|..+|++++.|.|..+...+|++.+.-+++...
T Consensus       100 -------~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~  139 (422)
T COG0738         100 -------SSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAA  139 (422)
T ss_pred             -------hhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHH
Confidence                   1234678889999999999999999999999988876443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.40  E-value=6.5e-06  Score=80.32  Aligned_cols=149  Identities=11%  Similarity=-0.011  Sum_probs=97.1

Q ss_pred             HHHHHHhhhhhCCchHH---HHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCC
Q 048319           16 WTMMEYLTEVWKISVVH---AAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVG   92 (348)
Q Consensus        16 ~~L~~Yl~~~l~~~~~~---A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~   92 (348)
                      ..+..|+.+..+.....   ++.+...+.....+..++.|+++|| +||++++..+..+..++.+++....         
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~---------  309 (408)
T PRK09874        240 PILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDR-IGPEKILITALIFSVLLLIPMSFVQ---------  309 (408)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHHHHhc---------
Confidence            44556666543322211   2233334444455666778999999 5999999999888877776554321         


Q ss_pred             CCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhh
Q 048319           93 TCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPI  169 (348)
Q Consensus        93 ~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~  169 (348)
                                   +...+++...+.+++.|...|...+...+..+++      .+   .+.+.+++...+   .+++.+.
T Consensus       310 -------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~---g~~~~~~~~~~~~g~~~gp~~~  367 (408)
T PRK09874        310 -------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQ------IA---GRIFSYNQSFRDIGNVTGPLMG  367 (408)
T ss_pred             -------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcc------cc---eeeehHHHHHHHHHHHhhHHHH
Confidence                         1345566777888899988888877776544322      13   556666666555   6677766


Q ss_pred             cccc---cchhhHHHHHHHHHHHHHHHHhc
Q 048319          170 SYIK---PWNLRFGVSAICTVIATLLFLSG  196 (348)
Q Consensus       170 ~yi~---g~~~~F~i~~~~~~i~~~vf~~g  196 (348)
                      +++.   ||+..|.+.++..+++.+.....
T Consensus       368 G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~  397 (408)
T PRK09874        368 AAISANYGFRAVFLVTAGVVLFNAVYSWNS  397 (408)
T ss_pred             HHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence            6653   99999999988888777655443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.37  E-value=1e-05  Score=81.43  Aligned_cols=70  Identities=16%  Similarity=-0.029  Sum_probs=55.3

Q ss_pred             HHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhh
Q 048319            6 WADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGI   76 (348)
Q Consensus         6 ~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~   76 (348)
                      ++--..++++ .-+..|+++.+|++..+++.....+.....+..+++|+++||+ ||++.++.+..+..++.
T Consensus       268 ~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~~~  338 (467)
T PRK09556        268 IFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALIIF  338 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHH
Confidence            3444455667 6677899999999999999998888888999999999999995 99888776655444443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.37  E-value=3.6e-06  Score=68.36  Aligned_cols=122  Identities=13%  Similarity=0.113  Sum_probs=88.2

Q ss_pred             HHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHh
Q 048319           41 SGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFA  120 (348)
Q Consensus        41 ~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG  120 (348)
                      .....+..++.|+++|| +|||+++..+..+..++.+++....                      +...+++...+.+++
T Consensus         8 ~~~~~~~~~~~g~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~g~~   64 (141)
T TIGR00880         8 ALGQLIYSPLSGLLTDR-FGRKPVLLVGLFIFVLSTAMFALSS----------------------NITVLIIARFLQGFG   64 (141)
T ss_pred             hhHHHHHHhhHHHHHhh-cchhHHHHHHHHHHHHHHHHHHHhc----------------------cHHHHHHHHHHHHHH
Confidence            34556677889999999 5999999999999888877765431                      235566677888899


Q ss_pred             cccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhcccc---cchhhHHHHHHHHHHHHHHHH
Q 048319          121 SSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYIK---PWNLRFGVSAICTVIATLLFL  194 (348)
Q Consensus       121 ~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi~---g~~~~F~i~~~~~~i~~~vf~  194 (348)
                      .|..-+...+...|.+++++      +   .+..++++...+   .+++.+.+++-   ||+..|.+..+..+++.+...
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (141)
T TIGR00880        65 AAFALVAGAALIADIYPPEE------R---GVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLA  135 (141)
T ss_pred             HHHHHHhHHHHHHHHCChhh------h---hHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHh
Confidence            99888999898888887543      3   455666665555   55555555543   899999887777666655444

>PTZ00207 hypothetical protein; Provisional

Probab=98.36  E-value=5.6e-06  Score=85.87  Aligned_cols=144  Identities=10%  Similarity=0.143  Sum_probs=100.1

Q ss_pred             HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCC
Q 048319           16 WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCS   95 (348)
Q Consensus        16 ~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~   95 (348)
                      ......+.+.+|+++.+.+.+.+...... ...+++|+++|+ +|||+++.++.++..+|++++.++......       
T Consensus        47 sv~s~~L~~~lgls~~~l~~i~svg~~~g-~~~lp~G~L~Dr-~G~R~vllig~ll~~iG~ll~ala~~~~i~-------  117 (591)
T PTZ00207         47 NLISGAMQARYNLTQRDLSTITTVGIAVG-YFLLPYSFIYDY-LGPRPIFVLSMTVFCLGTLLFALTFQEVIE-------  117 (591)
T ss_pred             HHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHhccccc-------
Confidence            33455677889999999998887754444 355678999999 599999999999999999998885321111       


Q ss_pred             CCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh----hhcchhhcc
Q 048319           96 EYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP----VAAIIPISY  171 (348)
Q Consensus        96 ~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in----~~~~~~~~y  171 (348)
                               .+...+++...+.++|.|.+-+.......+.|+++       |   .....+.....+    .++++...+
T Consensus       118 ---------~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~-------R---G~a~Gi~~~~~gLGsaI~~~l~~~l  178 (591)
T PTZ00207        118 ---------GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSN-------R---GAVVAIMKTFTGLGSAILGSIQLAF  178 (591)
T ss_pred             ---------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhh-------h---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     13567788888999999888777777888877522       2   345555555555    344444445


Q ss_pred             cc-cchhhHHHHHHHHH
Q 048319          172 IK-PWNLRFGVSAICTV  187 (348)
Q Consensus       172 i~-g~~~~F~i~~~~~~  187 (348)
                      +. +|+..|.+.++..+
T Consensus       179 ~~~~~~~~fl~l~vl~~  195 (591)
T PTZ00207        179 FSDNTSAYFFFLMSFAL  195 (591)
T ss_pred             HHHhHHHHHHHHHHHHH
Confidence            55 77766665444333

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.36  E-value=1.2e-05  Score=78.81  Aligned_cols=147  Identities=10%  Similarity=0.061  Sum_probs=92.4

Q ss_pred             HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCC
Q 048319           16 WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCS   95 (348)
Q Consensus        16 ~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~   95 (348)
                      ..+..|+++.+|++..+++.+.....+...+..+++|+++|| +||+|.+..+.....+....+....            
T Consensus       237 ~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~------------  303 (393)
T PRK15011        237 INMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKR-LGKRFLMRVAAVAGVCFYAGMLMAH------------  303 (393)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHHh------------
Confidence            456678888899999999888877777777788999999999 5999988877665555433322210            


Q ss_pred             CCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhccc
Q 048319           96 EYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYI  172 (348)
Q Consensus        96 ~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi  172 (348)
                                ....+.+...+.+++.|..-+...+...|.+++    +   +   .+...++....|   .+++.+.+++
T Consensus       304 ----------~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~----~---~---g~~~~~~~~~~~lg~~~g~~l~G~i  363 (393)
T PRK15011        304 ----------SPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG----Q---A---GSATTLYTNTSRVGWIIAGSLAGIV  363 (393)
T ss_pred             ----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----C---c---chHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      112233333444444444334444444554432    2   2   334444444444   5666666665


Q ss_pred             c---cchhhHHHHHHHHHHHHHHHHh
Q 048319          173 K---PWNLRFGVSAICTVIATLLFLS  195 (348)
Q Consensus       173 ~---g~~~~F~i~~~~~~i~~~vf~~  195 (348)
                      .   ||+..|.+..+..++++++.+.
T Consensus       364 ~~~~g~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK15011        364 AEIWNYHAVFWFALVMIIATLFCLLR  389 (393)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence            4   8999999888877777665543

>PRK09952 shikimate transporter; Provisional

Probab=98.36  E-value=1.6e-05  Score=79.43  Aligned_cols=119  Identities=12%  Similarity=0.092  Sum_probs=76.9

Q ss_pred             HHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCC
Q 048319           46 VLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCS  125 (348)
Q Consensus        46 ~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k  125 (348)
                      +..++.|+++||+ |||+++.++.+++.++.++..++..  ...    .        .......+++...+.++|.|+.-
T Consensus        79 ~g~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~~~~~~~~~--~~~----~--------~~~~~~~l~~~R~l~G~~~g~~~  143 (438)
T PRK09952         79 LGGVVFGHFGDRL-GRKRMLMLTVWMMGIATALIGLLPS--FST----I--------GWWAPVLLVTLRAIQGFAVGGEW  143 (438)
T ss_pred             hHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHhcCCc--HHH----H--------HHHHHHHHHHHHHHHHhhhcccH
Confidence            4456779999995 9999999999999999888776521  000    0        00001246667788999999999


Q ss_pred             cchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhcc----------cc-cchhhHHHHHHHHHH
Q 048319          126 VESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISY----------IK-PWNLRFGVSAICTVI  188 (348)
Q Consensus       126 ~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~y----------i~-g~~~~F~i~~~~~~i  188 (348)
                      |....+..|.++++.      |   ....+....+.+   +++..+..+          .. ||+..|.+.++..++
T Consensus       144 ~~~~~~~~e~~p~~~------r---g~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~  211 (438)
T PRK09952        144 GGAALLAVESAPKNK------K---AFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI  211 (438)
T ss_pred             HHHHHHHHHhCCCCC------C---cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH
Confidence            999999998766432      2   223333333333   333222111          12 999999988776544

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.36  E-value=1.1e-05  Score=79.59  Aligned_cols=145  Identities=13%  Similarity=0.091  Sum_probs=119.9

Q ss_pred             hhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCCcc
Q 048319           22 LTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPEC  101 (348)
Q Consensus        22 l~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~~c  101 (348)
                      +-+++|.+...|+..++.|....-+..++-..+.|| +-||+.++....+..+|.++-+++      |            
T Consensus        39 iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r-~~Rr~lLl~~l~lFi~~n~l~alA------p------------   99 (394)
T COG2814          39 IAADLGVSEGAAGQLITAYALGVALGAPLLALLTGR-LERRRLLLGLLALFIVSNLLSALA------P------------   99 (394)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cchHHHHHHHHHHHHHHHHHHHHh------c------------
Confidence            345799999999999999999999999999999999 699999999999999999998876      1            


Q ss_pred             cccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhcccc---cc
Q 048319          102 IVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYIK---PW  175 (348)
Q Consensus       102 ~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi~---g~  175 (348)
                          +...+.++-.+.++..|.+-+...+..++..++++      |   .+.-..-+....   .+|.-+-.++.   ||
T Consensus       100 ----~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~---~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GW  166 (394)
T COG2814         100 ----SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------R---GRALALVFTGLTLATVLGVPLGTFLGQLFGW  166 (394)
T ss_pred             ----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------h---hhHHHHHHHHHHHHHHHhccHHHHHHHHhhH
Confidence                46889999999999999999999999999888654      3   455555555544   44444445665   99


Q ss_pred             hhhHHHHHHHHHHHHHHHHhcCc
Q 048319          176 NLRFGVSAICTVIATLLFLSGTC  198 (348)
Q Consensus       176 ~~~F~i~~~~~~i~~~vf~~g~~  198 (348)
                      |..|.+-++.-+++.+..+..-|
T Consensus       167 R~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         167 RATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999888777777777776666

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.34  E-value=1.5e-05  Score=76.05  Aligned_cols=163  Identities=15%  Similarity=0.025  Sum_probs=103.3

Q ss_pred             HHHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchH-HHHHHHHHHhhhhhhhhcc
Q 048319            5 LWADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYW-MLVFSSLAYSVGIGLLTMS   82 (348)
Q Consensus         5 e~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~-ti~~~~~i~~~G~~ll~~s   82 (348)
                      .++..++++++ ..+..|+.+.+|++..+++.+.........+..+++|+++||+ ||++ .+........++.+++.+.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  302 (399)
T TIGR00893       224 QFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAIIAGLVLSLL  302 (399)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHHHHHHHHHHH
Confidence            44555667777 7788888888999999999999888888899999999999994 8875 2222222222221111111


Q ss_pred             cC-CccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHH
Q 048319           83 TP-PVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMV  161 (348)
Q Consensus        83 ~~-p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~i  161 (348)
                      .. ...                 .........+.+++.+..+.-|...++.+|.+++++      +   .+.+.++....
T Consensus       303 ~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---g~~~~~~~~~~  356 (399)
T TIGR00893       303 MFATNY-----------------VNIPYAALALVALGFFGLGAGAIGWALISDNAPGNI------A---GLTGGLINSLG  356 (399)
T ss_pred             HHHhcc-----------------chhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhH------H---HHHHHHHHHHH
Confidence            00 000                 011222333334444444477888888888776432      3   55666666666


Q ss_pred             h---hhcchhhcccc---c-chhhHHHHHHHHHHHHHHHH
Q 048319          162 P---VAAIIPISYIK---P-WNLRFGVSAICTVIATLLFL  194 (348)
Q Consensus       162 n---~~~~~~~~yi~---g-~~~~F~i~~~~~~i~~~vf~  194 (348)
                      +   .+++.+.+++.   | |...|.+.++..+++.++.+
T Consensus       357 ~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       357 NLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             HHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence            6   66777777664   6 99999988877777665543

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.34  E-value=7.1e-06  Score=82.55  Aligned_cols=141  Identities=11%  Similarity=-0.100  Sum_probs=93.0

Q ss_pred             HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCC
Q 048319           16 WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCS   95 (348)
Q Consensus        16 ~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~   95 (348)
                      ..+..|+++.+|++..+++.+...+.....+..+++|+++|| +||++.+.++.++..++.+++.....           
T Consensus       296 ~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~-----------  363 (496)
T PRK03893        296 ALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDW-LGTRKAYVCSLLISQLLIIPVFAIGG-----------  363 (496)
T ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhhccc-----------
Confidence            556778878899999999999999999999999999999999 59999998887776665544332210           


Q ss_pred             CCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhccc
Q 048319           96 EYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYI  172 (348)
Q Consensus        96 ~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi  172 (348)
                               .........+++.+....+.-+...+...|.++++.      +   .+.+.+++...+   .+++.+.+++
T Consensus       364 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---g~~~~~~~~~~~~g~~lgp~l~g~l  425 (496)
T PRK03893        364 ---------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------R---AAGLGFTYNVGALGGALAPILGALI  425 (496)
T ss_pred             ---------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------h---hcccchhhhhhhHHHHHHHHHHHHH
Confidence                     112222222333222223344566667776665321      3   566777777666   5677666666


Q ss_pred             c---cchhhHHHHHHHH
Q 048319          173 K---PWNLRFGVSAICT  186 (348)
Q Consensus       173 ~---g~~~~F~i~~~~~  186 (348)
                      .   ||+..|.+.++.+
T Consensus       426 ~~~~g~~~~~~~~~~~~  442 (496)
T PRK03893        426 AQRLDLGTALASLSFSL  442 (496)
T ss_pred             hccCChHHHHHHHHHHH
Confidence            5   7777765544333

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.33  E-value=4.9e-06  Score=79.83  Aligned_cols=153  Identities=16%  Similarity=0.057  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhh-hhhhc
Q 048319            4 LLWADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGI-GLLTM   81 (348)
Q Consensus         4 ~e~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~-~ll~~   81 (348)
                      ..++..+.++++ ..+..|+++.+|.+..+++.+.........+..+++|+++|| +||++.+..+..+..+.. .++..
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~  305 (394)
T TIGR00883       227 LVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDR-IGRRPVLIIFTVLAALLAVPLLMA  305 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHHHHHHHH
Confidence            445667778888 778888888899999999998888888888999999999999 599998876655444322 22211


Q ss_pred             ccCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHH
Q 048319           82 STPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMV  161 (348)
Q Consensus        82 s~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~i  161 (348)
                      ...                   ......++..+.+.+++.|...+...++..|.++++.      |   .+.+...|...
T Consensus       306 ~~~-------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~---~~~~~~~~~~~  357 (394)
T TIGR00883       306 LLD-------------------SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV------R---YTGASLAYNLA  357 (394)
T ss_pred             Hhc-------------------CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc------e---eeEeeehhHhH
Confidence            100                   0123445566677788888888999999998877543      2   23344333333


Q ss_pred             h----hhcchhhcccc---c-chhhHHHHHHH
Q 048319          162 P----VAAIIPISYIK---P-WNLRFGVSAIC  185 (348)
Q Consensus       162 n----~~~~~~~~yi~---g-~~~~F~i~~~~  185 (348)
                      +    .+++.+.+++-   | |+..+...++.
T Consensus       358 ~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~  389 (394)
T TIGR00883       358 GAIFGGFAPYIAAALVAMTGDWYAIGYYLAAL  389 (394)
T ss_pred             HHHHhhHHHHHHHHHHHHcCcchhHHHHHHHH
Confidence            3    35555555443   5 66655544443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.33  E-value=7.9e-06  Score=80.58  Aligned_cols=151  Identities=15%  Similarity=0.118  Sum_probs=106.7

Q ss_pred             HhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCC
Q 048319           13 FVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFV   91 (348)
Q Consensus        13 yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~   91 (348)
                      .++ ..+..|+.+.+|++...++.+...+.....+..+++++++|+ .++++++..+..+..++.+++...  |      
T Consensus       240 ~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~--~------  310 (417)
T PRK10489        240 SAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHS-ARPGLLMLLSTLGSFLAVGLFGLM--P------  310 (417)
T ss_pred             HhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhc-cCcchHHHHHHHHHHHHHHHHHcc--c------
Confidence            455 556677877799999999999888888888899999999998 477788888888888887766543  1      


Q ss_pred             CCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchh
Q 048319           92 GTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIP  168 (348)
Q Consensus        92 ~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~  168 (348)
                                    +.....+++.+.++|.+...+...++..|+.+++.      +   .+.+.+++...+   .+++.+
T Consensus       311 --------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~---g~~~g~~~~~~~~g~~~g~~l  367 (417)
T PRK10489        311 --------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------L---GRINGLWTAQNVTGDAIGAAL  367 (417)
T ss_pred             --------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------H---HHHHHHHHHHHhhhHhHHHHH
Confidence                          23445566677778877766666677776665432      3   556777766555   667766


Q ss_pred             hcccc---cchhhHHHHHHHHHHHHHHHHh
Q 048319          169 ISYIK---PWNLRFGVSAICTVIATLLFLS  195 (348)
Q Consensus       169 ~~yi~---g~~~~F~i~~~~~~i~~~vf~~  195 (348)
                      .+++-   |+...|.+.+++.++..++...
T Consensus       368 ~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  397 (417)
T PRK10489        368 LGGLGAMMTPVASASASGFGLLIIGVLLLL  397 (417)
T ss_pred             HHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence            66654   7777887666555554444433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.32  E-value=1.3e-05  Score=80.62  Aligned_cols=156  Identities=12%  Similarity=0.016  Sum_probs=105.5

Q ss_pred             HHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhh-ccchHHHHHHHHHHh--hhhhhhhccc
Q 048319            8 DCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTI-ISKYWMLVFSSLAYS--VGIGLLTMST   83 (348)
Q Consensus         8 Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~-lGr~~ti~~~~~i~~--~G~~ll~~s~   83 (348)
                      .-+++++. ..+..|+++ +|++..+++.+.........+..+++|+++|+. .++++...++..+..  ++++++... 
T Consensus       253 ~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~-  330 (455)
T TIGR00892       253 MFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA-  330 (455)
T ss_pred             HHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            33455555 666777764 799999999999988888888888999999984 344444444333333  333332221 


Q ss_pred             CCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh-
Q 048319           84 PPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP-  162 (348)
Q Consensus        84 ~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in-  162 (348)
                                           .+...+++...+.+++.|..-++..+...|.+++++      +   .+.+..+....+ 
T Consensus       331 ---------------------~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------~---g~~~g~~~~~~~l  380 (455)
T TIGR00892       331 ---------------------GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------F---SSAVGLVTIVECC  380 (455)
T ss_pred             ---------------------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------H---hhHHhHHHHHHHH
Confidence                                 123456667778889999999999999998776432      2   445556555555 


Q ss_pred             --hhcchhhcccc----cchhhHHHHHHHHHHHHHHHHh
Q 048319          163 --VAAIIPISYIK----PWNLRFGVSAICTVIATLLFLS  195 (348)
Q Consensus       163 --~~~~~~~~yi~----g~~~~F~i~~~~~~i~~~vf~~  195 (348)
                        .+++.+.+++-    +|+..|.+.++.++++.+....
T Consensus       381 g~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~~~~  419 (455)
T TIGR00892       381 AVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLFLAI  419 (455)
T ss_pred             HHHccccceeeeehhcCCcchHHHHhhHHHHHHHHHHHH
Confidence              77777777653    6999999988887777664443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.32  E-value=1.7e-05  Score=88.37  Aligned_cols=127  Identities=11%  Similarity=-0.024  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHH--HHHHHhhhhhhhhcccCCccCCCCCCCCCCCCcccccchhHHH
Q 048319           33 AAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVF--SSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECIVKGHKILF  110 (348)
Q Consensus        33 A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~--~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~~c~~~~~~~~~  110 (348)
                      .+....++.....++.+++|+++||+ ||+|++..  ...+...+..++....                     .+.+.+
T Consensus        54 ~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~~---------------------~s~~~l  111 (1140)
T PRK06814         54 VTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFHL---------------------NSVPLL  111 (1140)
T ss_pred             HHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHHH---------------------hhHHHH
Confidence            44555566666778889999999995 99997643  2222222222222110                     135778


Q ss_pred             HHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhcccc---cchhhHHHHHH
Q 048319          111 YAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYIK---PWNLRFGVSAI  184 (348)
Q Consensus       111 ~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi~---g~~~~F~i~~~  184 (348)
                      +++.++.++|.+.+.|...+++.|.+++++      +   ....++..++.+   ++++.+.+++-   ||++.|.+.++
T Consensus       112 ~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~---~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~  182 (1140)
T PRK06814        112 FAALFLMGIHSALFGPIKYSILPDHLNKDE------L---LGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMG  182 (1140)
T ss_pred             HHHHHHHHHHHHhhchHHHHhhHhhcCccc------c---chhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence            899999999999999999999999998643      3   567888888887   67777777653   89998844444


Q ss_pred             HHHHHH
Q 048319          185 CTVIAT  190 (348)
Q Consensus       185 ~~~i~~  190 (348)
                      ..++++
T Consensus       183 ~~~~~~  188 (1140)
T PRK06814        183 IAVLGW  188 (1140)
T ss_pred             HHHHHH
Confidence            434333

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.32  E-value=1.6e-05  Score=77.57  Aligned_cols=143  Identities=19%  Similarity=0.121  Sum_probs=98.0

Q ss_pred             HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCC
Q 048319           16 WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCS   95 (348)
Q Consensus        16 ~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~   95 (348)
                      ..+..|+.+ .|.+...++...........+..++.|+++|| +||++.+..+..+..++..++. . .           
T Consensus       221 ~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~l~~~~~~~~~~~~~~~-~-~-----------  285 (381)
T PRK03633        221 GLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADR-FGRLLVLRVQVFVVILGSIAML-S-Q-----------  285 (381)
T ss_pred             HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-cCcHHHHHHHHHHHHHHHHHHh-h-h-----------
Confidence            445566664 69999999888888888888899999999999 5999999999888888766543 1 0           


Q ss_pred             CCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhccc
Q 048319           96 EYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYI  172 (348)
Q Consensus        96 ~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi  172 (348)
                                  ...+..+.+.+++.+..-|...+...|+.++++      +   .+....+..+.+   .+++.+.+++
T Consensus       286 ------------~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~---~~~~~~~~~~~~lG~~igp~~~G~l  344 (381)
T PRK03633        286 ------------AAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------L---VAMNQALLLSYTVGSLLGPSFTAML  344 (381)
T ss_pred             ------------HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------H---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        122345556666666677888887776664432      1   223333333333   6777777765


Q ss_pred             -c--cchhhHHHHHHHHHHHHHHHH
Q 048319          173 -K--PWNLRFGVSAICTVIATLLFL  194 (348)
Q Consensus       173 -~--g~~~~F~i~~~~~~i~~~vf~  194 (348)
                       +  ||.+.|.+.+.+.+++.+..+
T Consensus       345 ~~~~g~~~~f~~~~~~~l~~~~~~~  369 (381)
T PRK03633        345 MQNYSDNLLFIMIASVSFIYLLMLL  369 (381)
T ss_pred             HHHhCccHHHHHHHHHHHHHHHHHH
Confidence             3  899999987777766554433

>PRK12382 putative transporter; Provisional

Probab=98.31  E-value=1.1e-05  Score=78.77  Aligned_cols=151  Identities=13%  Similarity=0.081  Sum_probs=103.9

Q ss_pred             HHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccC
Q 048319           10 LAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLA   88 (348)
Q Consensus        10 ~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~   88 (348)
                      +++.++ ..+..|+.+ .|++.  +......+.....+..++.|++.|| +||+|.+..+..+..++.+++....     
T Consensus       230 ~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~-----  300 (392)
T PRK12382        230 VGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDR-FGGVKVAIVSLLVETVGLLLLWLAP-----  300 (392)
T ss_pred             HHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHh-cCCCeehHHHHHHHHHHHHHHHHcc-----
Confidence            344444 444566654 45543  4444555555667778899999999 6999999999999888887765431     


Q ss_pred             CCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhc
Q 048319           89 GFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAA  165 (348)
Q Consensus        89 ~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~  165 (348)
                                       +....+++..+.++|.|..-|...+...|.++++.      +   .+.+.+++...+   .++
T Consensus       301 -----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~---g~~~g~~~~~~~~g~~ig  354 (392)
T PRK12382        301 -----------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------R---GTALGGYAAFQDIAYGVS  354 (392)
T ss_pred             -----------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------H---HHHHHHHHHHHHHHHHHH
Confidence                             12445566777888888877777777776654321      3   567777777666   666


Q ss_pred             chhhcccc---cchhhHHHHHHHHHHHHHHHHh
Q 048319          166 IIPISYIK---PWNLRFGVSAICTVIATLLFLS  195 (348)
Q Consensus       166 ~~~~~yi~---g~~~~F~i~~~~~~i~~~vf~~  195 (348)
                      +.+.+++-   ||+..|.+.++..+++.++.+.
T Consensus       355 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        355 GPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence            66666653   9999999998888887776654

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.29  E-value=1.3e-05  Score=78.80  Aligned_cols=153  Identities=11%  Similarity=0.075  Sum_probs=96.1

Q ss_pred             HHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCC
Q 048319           20 EYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKP   99 (348)
Q Consensus        20 ~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~   99 (348)
                      .++.+.+|++..+++.....+.....+..+++|+++|| +||++.+.++.++..++.+++.+...+...+  .   +   
T Consensus       308 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~---  378 (481)
T TIGR00879       308 PTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDR-FGRRPLLLIGAAGMAICLFVLGILGASFVTG--S---S---  378 (481)
T ss_pred             HHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHhhcccCC--c---c---
Confidence            34445689999888888888888889999999999999 5999999999888888877776322211000  0   0   


Q ss_pred             cccccchhHHH-HHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhcccc--
Q 048319          100 ECIVKGHKILF-YAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYIK--  173 (348)
Q Consensus       100 ~c~~~~~~~~~-~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi~--  173 (348)
                         .......+ ...++....|. +.-|+...+.+|.++++.      +   .......+...|   .+++.+.+++.  
T Consensus       379 ---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~------~---~~~~~~~~~~~~lg~~i~~~~~~~~~~~  445 (481)
T TIGR00879       379 ---KSSGNVAIVFILLFIAFFAM-GWGPVPWVIVSEIFPLSL------R---PKGISIAVAANWLANFIVGFLFPTMLES  445 (481)
T ss_pred             ---cchhHHHHHHHHHHHHHHHc-cccCeehhhhhccCChHH------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence               00011222 22222233333 344777777788776432      2   445555555555   55565556553  


Q ss_pred             -cchhhHHHHHHHHHHHHHHHH
Q 048319          174 -PWNLRFGVSAICTVIATLLFL  194 (348)
Q Consensus       174 -g~~~~F~i~~~~~~i~~~vf~  194 (348)
                       ||...|.+.+++.+++.++.+
T Consensus       446 ~~~~~~f~~~~~~~~~~~i~~~  467 (481)
T TIGR00879       446 IGVGGVFIFFGGLNVLGLIFVY  467 (481)
T ss_pred             cCccceehhHHHHHHHHHHHHh
Confidence             899999887777666655443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.29  E-value=2.5e-05  Score=76.46  Aligned_cols=148  Identities=10%  Similarity=-0.054  Sum_probs=98.5

Q ss_pred             HHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCC
Q 048319           11 AQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAG   89 (348)
Q Consensus        11 a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~   89 (348)
                      .++.+ ..+..|+.+ .|++..+++.+...+.....+..+++|+++|| +||++++.++.....++.+++....      
T Consensus       235 ~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~------  306 (406)
T PRK11551        235 VLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDR-LRPRRVVLLIYAGILASLAALAAAP------  306 (406)
T ss_pred             HHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhcC------
Confidence            34444 444556654 79999999999999988899999999999999 5999999887777666665554321      


Q ss_pred             CCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcc
Q 048319           90 FVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAI  166 (348)
Q Consensus        90 ~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~  166 (348)
                                      +...+++...+.+++.++..+...++..|.+++++      +   .+...+++...+   .+++
T Consensus       307 ----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~---g~~~g~~~~~~~~g~~~g~  361 (406)
T PRK11551        307 ----------------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------R---GTGVGAAVAVGRLGSMAGP  361 (406)
T ss_pred             ----------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------h---hhhhhHHHHhhhHHHHHHh
Confidence                            12334445556677777777778888887775432      3   445555555544   6666


Q ss_pred             hhhcccc----cchhhHHHHHHHHHHHHH
Q 048319          167 IPISYIK----PWNLRFGVSAICTVIATL  191 (348)
Q Consensus       167 ~~~~yi~----g~~~~F~i~~~~~~i~~~  191 (348)
                      .+.+++-    +|...|.+.....+++.+
T Consensus       362 ~~~g~l~~~~~~~~~~~~~~~~~~~~~~~  390 (406)
T PRK11551        362 LLAGQLLALGRSTVGVIGASIPVILVAAL  390 (406)
T ss_pred             hhHhhhhccCCchHHHHHHHHHHHHHHHH
Confidence            6666653    555566655555544443

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.29  E-value=3.7e-05  Score=78.18  Aligned_cols=158  Identities=14%  Similarity=0.102  Sum_probs=102.5

Q ss_pred             HHHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhh----ccchHH-HHHHHHHHhhhhhh
Q 048319            5 LWADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTI----ISKYWM-LVFSSLAYSVGIGL   78 (348)
Q Consensus         5 e~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~----lGr~~t-i~~~~~i~~~G~~l   78 (348)
                      -+..-+.++-. ..+..|+++ .|.+.++.+..  ...+..|...++.|.++||+    +||||. ++++.+...++...
T Consensus        21 ~~~~gl~~~~~~~~l~~~l~~-~g~~~~~ig~~--~~~~~~~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~   97 (491)
T PRK11010         21 GFASGLPLALTSGTLQAWMTV-ENIDLKTIGFF--SLVGQAYVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAA   97 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHH--HHHHHHHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHH
Confidence            33444455545 556666654 58887777765  33455678999999999995    399996 55676666666666


Q ss_pred             hhcccCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHH
Q 048319           79 LTMSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLL  158 (348)
Q Consensus        79 l~~s~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y  158 (348)
                      +.... |                  ..+...+++...+.+++.+...+...++..|.+++++      |   .+...+.-
T Consensus        98 ~a~~~-~------------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~------r---g~~~~i~~  149 (491)
T PRK11010         98 MGFLE-P------------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE------R---GAGAAISV  149 (491)
T ss_pred             HHHcC-C------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------h---HHHHHHHH
Confidence            54431 1                  1235566667778888899999999999999887432      2   33334433


Q ss_pred             HHHh---hhcchhhccc-c---cchhhHHHHHHHHHHHHHHH
Q 048319          159 FMVP---VAAIIPISYI-K---PWNLRFGVSAICTVIATLLF  193 (348)
Q Consensus       159 ~~in---~~~~~~~~yi-~---g~~~~F~i~~~~~~i~~~vf  193 (348)
                      .+.+   ++++.+..++ +   ||+..|.+.++.+++..+..
T Consensus       150 ~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~  191 (491)
T PRK11010        150 LGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIAT  191 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH
Confidence            3333   4444444433 2   89999999887766665443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.28  E-value=2.1e-05  Score=78.80  Aligned_cols=157  Identities=15%  Similarity=0.072  Sum_probs=91.6

Q ss_pred             HHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhc-cchHHH-HHHHHHHhhhhhhhhcc
Q 048319            6 WADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTII-SKYWML-VFSSLAYSVGIGLLTMS   82 (348)
Q Consensus         6 ~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~l-Gr~~ti-~~~~~i~~~G~~ll~~s   82 (348)
                      ++--+.+|++ ..+..|+++..|++..+++.....+.....+..+++|+++||+- ||++.. .....+..++.+++.+.
T Consensus       263 ~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~  342 (452)
T PRK11273        263 VFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLN  342 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHh
Confidence            3444566777 77788888889999999888888877777788999999999963 555432 33334444444433321


Q ss_pred             cCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh
Q 048319           83 TPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP  162 (348)
Q Consensus        83 ~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in  162 (348)
                        +.                  .+.....+.+.+++.+..+.-+....+..|.++++    .  +   .+.+.++....|
T Consensus       343 --~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~----~--~---g~~~g~~~~~~~  393 (452)
T PRK11273        343 --PA------------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKK----A--A---GTAAGFTGLFGY  393 (452)
T ss_pred             --cc------------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChh----h--h---hhHHHHHHHHHH
Confidence              10                  01222333343443332221112223444444322    1  3   556666666555


Q ss_pred             ----hhcchhhcccc---cchhhHHHHHHHHHHHHH
Q 048319          163 ----VAAIIPISYIK---PWNLRFGVSAICTVIATL  191 (348)
Q Consensus       163 ----~~~~~~~~yi~---g~~~~F~i~~~~~~i~~~  191 (348)
                          .+++.+.+++.   ||+.+|.+..+..+++.+
T Consensus       394 ~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~  429 (452)
T PRK11273        394 LGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVI  429 (452)
T ss_pred             HHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence                33566666664   999999887776666544

>TIGR00889 2A0110 nucleoside transporter

Probab=98.24  E-value=2.8e-05  Score=77.31  Aligned_cols=150  Identities=14%  Similarity=0.193  Sum_probs=102.4

Q ss_pred             HHHHHHhhhhhCCch--------HHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCcc
Q 048319           16 WTMMEYLTEVWKISV--------VHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVL   87 (348)
Q Consensus        16 ~~L~~Yl~~~l~~~~--------~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~   87 (348)
                      ..+..|+++ .|.++        ...+...........+.-++.|+++|| +||++++.++.++..++..++.....   
T Consensus       229 ~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr-~g~r~~l~~~~~~~~v~~~l~~~~~~---  303 (418)
T TIGR00889       229 IFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKR-FGIKKVMLLSLVAWALRFGFFAYGDP---  303 (418)
T ss_pred             HhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHcCc---
Confidence            334456543 45443        455667777776777778899999999 59999999999999998777765311   


Q ss_pred             CCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHH-Hh---h
Q 048319           88 AGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFM-VP---V  163 (348)
Q Consensus        88 ~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~-in---~  163 (348)
                                     +......+++...+.+++.|...+....+++|.+++++      +   .+.+.+++.. .+   .
T Consensus       304 ---------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------~---g~~~g~~~~~~~~lg~~  359 (418)
T TIGR00889       304 ---------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------R---ASAQGLFTLMCNGFGSL  359 (418)
T ss_pred             ---------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------H---HHHHHHHHHHHHhhHHH
Confidence                           00123456667778888888888888888998887543      3   5566666532 22   5


Q ss_pred             hcchhhcccc---------cchhhHHHHHHHHHHHHHHHH
Q 048319          164 AAIIPISYIK---------PWNLRFGVSAICTVIATLLFL  194 (348)
Q Consensus       164 ~~~~~~~yi~---------g~~~~F~i~~~~~~i~~~vf~  194 (348)
                      +++.+.+++-         ||+..|.+.++..+++.++++
T Consensus       360 iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~  399 (418)
T TIGR00889       360 LGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFM  399 (418)
T ss_pred             HHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHH
Confidence            6666666542         488999887777666555444

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.24  E-value=1.6e-05  Score=76.96  Aligned_cols=136  Identities=13%  Similarity=-0.052  Sum_probs=93.8

Q ss_pred             HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCC
Q 048319           16 WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCS   95 (348)
Q Consensus        16 ~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~   95 (348)
                      ..+..|+.+.+|++..+++.+...+.....+..+++|+++|| +||++.+.++..+..+....+....            
T Consensus       259 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~------------  325 (405)
T TIGR00891       259 DLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDW-LGRRKAYVCSLLAGQLLIIPVFAIG------------  325 (405)
T ss_pred             hhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchhhhHHHHHHHHHHHHHHHHhC------------
Confidence            445667777899999999999999888999999999999999 5999999988776533322222110            


Q ss_pred             CCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhccc
Q 048319           96 EYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYI  172 (348)
Q Consensus        96 ~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi  172 (348)
                               .+...+.+++.+.++..++.-+...++..|.++++.      +   .+.+...+...+   .+++.+.+++
T Consensus       326 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---~~~~g~~~~~~~~g~~~g~~~~g~l  387 (405)
T TIGR00891       326 ---------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ------R---AAGLGFTYQLGNLGGALAPIIGALL  387 (405)
T ss_pred             ---------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch------h---HHHhhHHHHHHHHHHHHHHHHHHHH
Confidence                     012344555556666666666777788887765432      3   556777777666   6667666666


Q ss_pred             c---c-chhhHHHH
Q 048319          173 K---P-WNLRFGVS  182 (348)
Q Consensus       173 ~---g-~~~~F~i~  182 (348)
                      .   | |..+|...
T Consensus       388 ~~~~g~~~~~~~~~  401 (405)
T TIGR00891       388 AQRLDEYGTALASL  401 (405)
T ss_pred             HHhccccchhHHhh
Confidence            4   5 76666543

>PRK15075 citrate-proton symporter; Provisional

Probab=98.23  E-value=2.9e-05  Score=77.30  Aligned_cols=112  Identities=11%  Similarity=-0.000  Sum_probs=74.4

Q ss_pred             HHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhh-hhhhhh-ccc
Q 048319            7 ADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSV-GIGLLT-MST   83 (348)
Q Consensus         7 ~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~-G~~ll~-~s~   83 (348)
                      +....++++ ..+..|+++.+|++..++......+.....+..+++|+++|| +||||.+.++..+..+ +...+. ...
T Consensus       249 ~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~  327 (434)
T PRK15075        249 MTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDR-IGRRPVLIAFTVLAILTAYPALSWLVA  327 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHc
Confidence            455667777 778888888899999988877777777778889999999999 5999988876554432 211111 111


Q ss_pred             CCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhcc
Q 048319           84 PPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIA  139 (348)
Q Consensus        84 ~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~  139 (348)
                      .    +                ........+++.+++.|...+...++..|.++++
T Consensus       328 ~----~----------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~  363 (434)
T PRK15075        328 A----P----------------SFARMLAVELWLSFLYGSYNGAMVVALTEVMPAE  363 (434)
T ss_pred             C----C----------------chHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCC
Confidence            0    0                1222333445556677777776777778777643

>PRK09669 putative symporter YagG; Provisional

Probab=98.22  E-value=2.2e-05  Score=78.35  Aligned_cols=153  Identities=13%  Similarity=0.129  Sum_probs=95.8

Q ss_pred             HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhh---ccchHH-HHHHHHHHhhhhhhhhcccCCccCCCC
Q 048319           16 WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTI---ISKYWM-LVFSSLAYSVGIGLLTMSTPPVLAGFV   91 (348)
Q Consensus        16 ~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~---lGr~~t-i~~~~~i~~~G~~ll~~s~~p~~~~~~   91 (348)
                      ..+..|+++.+|++.+.++.+..+...+--+..++.|+++||.   +||||- ++++.+...+..+++...  |...   
T Consensus        30 ~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~--p~~~---  104 (444)
T PRK09669         30 LFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYT--PDFG---  104 (444)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhC--CCCC---
Confidence            4567788899999999999999999999999999999999994   698665 446767776766555432  3211   


Q ss_pred             CCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcch-
Q 048319           92 GTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAII-  167 (348)
Q Consensus        92 ~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~-  167 (348)
                                 ...+...+++...+..++...+.....++++|..++  ++||      .+...|.....|   .++.. 
T Consensus       105 -----------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~--~~eR------~~l~~~r~~~~~~G~~i~~~~  165 (444)
T PRK09669        105 -----------ATGKIIYACVTYILLSLVYTAINVPYCAMPGAITND--PRER------HSLQSWRFALSFIGGLIVSVI  165 (444)
T ss_pred             -----------cchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCC--HHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence                       012233444444445555556667777888876543  3443      334555555444   22222 


Q ss_pred             ---hhccc-----c-cchhhHHHHHHHHHHHHHH
Q 048319          168 ---PISYI-----K-PWNLRFGVSAICTVIATLL  192 (348)
Q Consensus       168 ---~~~yi-----~-g~~~~F~i~~~~~~i~~~v  192 (348)
                         +..+.     + ||...+.+.++..++..++
T Consensus       166 ~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~  199 (444)
T PRK09669        166 ALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFC  199 (444)
T ss_pred             HHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence               12222     1 6777777666655554443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.22  E-value=1.6e-05  Score=78.48  Aligned_cols=164  Identities=13%  Similarity=0.080  Sum_probs=105.1

Q ss_pred             HHHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhccc
Q 048319            5 LWADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMST   83 (348)
Q Consensus         5 e~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~   83 (348)
                      .++..+++++. .....|++..+| +...++.+.........+..++.++++|| +||++++.++..+..++.+++.+..
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~  308 (437)
T TIGR00792       231 YLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKK-FGRKILFAGGILLMVLGYLIFFFAG  308 (437)
T ss_pred             HHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHcc
Confidence            44455555555 444445555566 44555666666666777778889999999 5999999999999988887766531


Q ss_pred             CCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchh-hhhhhhhhhhHHHHHHHHHh
Q 048319           84 PPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINE-HISLSLIQREFFKLLLFMVP  162 (348)
Q Consensus        84 ~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~-e~~~~~~~~~~f~~~y~~in  162 (348)
                                           .+...+++...+.++|.|..-+...++.+|..|+++-+ .++++   ..++..+.++.+
T Consensus       309 ---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---G~~~~~~~~~~~  364 (437)
T TIGR00792       309 ---------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAE---GLVYSVRTFVRK  364 (437)
T ss_pred             ---------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccch---HHHHHHHHHHHH
Confidence                                 12344556667788899988899999999988765321 11223   556666666555


Q ss_pred             ---hhcchhhcccc---cc--------------hhh-HHHHHHHHHHHHHHHH
Q 048319          163 ---VAAIIPISYIK---PW--------------NLR-FGVSAICTVIATLLFL  194 (348)
Q Consensus       163 ---~~~~~~~~yi~---g~--------------~~~-F~i~~~~~~i~~~vf~  194 (348)
                         .+++.+.+++-   ||              ++. ..+|+++.+++++++.
T Consensus       365 ~g~~lg~~i~g~ll~~~G~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~  417 (437)
T TIGR00792       365 LGQALAGFLVGLILGIIGYVANAAQSPITLNGIKILMFAVPALFLLLAAIIIG  417 (437)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               44444444331   33              223 3356677766666554

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK03545 putative arabinose transporter; Provisional

Probab=98.22  E-value=5.4e-05  Score=73.99  Aligned_cols=156  Identities=12%  Similarity=-0.010  Sum_probs=104.7

Q ss_pred             HHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCC
Q 048319            7 ADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPP   85 (348)
Q Consensus         7 ~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p   85 (348)
                      +--..+++. ..+..|+.+.+|++..+++.+...+.....+..+++|+++||+ ||++ +..+..+..++..++....  
T Consensus       216 ~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~-~~~~~~~~~~~~~~l~~~~--  291 (390)
T PRK03545        216 VVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGF-LLIAIALLLVCLLLLLPAA--  291 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhH-HHHHHHHHHHHHHHHHHHh--
Confidence            334455556 6566778888999999999999999889999999999999994 8775 4555555555544332211  


Q ss_pred             ccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---
Q 048319           86 VLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---  162 (348)
Q Consensus        86 ~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---  162 (348)
                                         .+...+++...+.+++.++.-+...+.+.+..++    +   +   .+...++....+   
T Consensus       292 -------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~----~---~---~~~~g~~~~~~~~g~  342 (390)
T PRK03545        292 -------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD----A---T---DVAMALFSGIFNIGI  342 (390)
T ss_pred             -------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC----c---H---HHHHHHHHHHHHHHH
Confidence                               0234555566677788777777666666654332    1   2   444555444444   


Q ss_pred             hhcchhhcccc---cchhhHHHHHHHHHHHHHHHHh
Q 048319          163 VAAIIPISYIK---PWNLRFGVSAICTVIATLLFLS  195 (348)
Q Consensus       163 ~~~~~~~~yi~---g~~~~F~i~~~~~~i~~~vf~~  195 (348)
                      .+|+.+.+++-   |++..|.+.++..++++++++.
T Consensus       343 ~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~  378 (390)
T PRK03545        343 GAGALLGNQVSLHLGLSSIGYVGAALALAALVWSIL  378 (390)
T ss_pred             HHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHH
Confidence            56666666653   9999999888888887776654

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.22  E-value=1e-05  Score=82.55  Aligned_cols=139  Identities=16%  Similarity=0.214  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCCcccccchhHHHH
Q 048319           32 HAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECIVKGHKILFY  111 (348)
Q Consensus        32 ~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~~c~~~~~~~~~~  111 (348)
                      +-+.+.+.+...+.+..++.|.++|+ +|||++++++.+++.+|.++...+.                      +...++
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~-~GRk~~l~~~~~~~~iG~ii~~~a~----------------------~~~~l~  146 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDR-IGRKKTLLLAVVLFLIGAIIIALAP----------------------SWYQLI  146 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhh----------------------hHHHHH
Confidence            34788999999999999999999999 5999999999999999999988762                      467899


Q ss_pred             HHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhcccc----cchhhHHH---
Q 048319          112 AALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYIK----PWNLRFGV---  181 (348)
Q Consensus       112 ~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi~----g~~~~F~i---  181 (348)
                      +|.++.++|.|+.-..++.+.+|-=    |++.  |   ...-+.+.+.++   +++...-...+    +|+..+++   
T Consensus       147 ~GR~l~G~g~G~~~~~~piy~sEia----p~~~--R---G~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i  217 (513)
T KOG0254|consen  147 VGRILTGLGVGGASVLAPVYISEIA----PAHI--R---GTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALI  217 (513)
T ss_pred             HHHHHhccchhhhhhcchhhHhhcC----Chhh--h---HHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHH
Confidence            9999999999999877777777433    3221  2   333333344444   44432222222    69977775   


Q ss_pred             HHHHHHHHHHHHHhcCcccccC
Q 048319          182 SAICTVIATLLFLSGTCTYENK  203 (348)
Q Consensus       182 ~~~~~~i~~~vf~~g~~~y~~~  203 (348)
                      |++.++++ ..+.-.+|+|..+
T Consensus       218 ~~~~~~~~-~~~~pesp~~L~~  238 (513)
T KOG0254|consen  218 PAVILALG-MLFLPESPRWLIE  238 (513)
T ss_pred             HHHHHHHH-HHhCCCChHHHHH
Confidence            44444444 3344455655443

>PRK09848 glucuronide transporter; Provisional

Probab=98.20  E-value=6.3e-05  Score=75.13  Aligned_cols=114  Identities=13%  Similarity=0.129  Sum_probs=78.6

Q ss_pred             HHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhh---ccchHHH-HHHHHHHhhhhhhhhccc
Q 048319            9 CLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTI---ISKYWML-VFSSLAYSVGIGLLTMST   83 (348)
Q Consensus         9 r~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~---lGr~~ti-~~~~~i~~~G~~ll~~s~   83 (348)
                      .+++.-+ ..+..|+++.+|++..+++.+........-+..+++|+++||.   +||||-. +++.+...+...++... 
T Consensus        21 ~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~-   99 (448)
T PRK09848         21 NFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWV-   99 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhC-
Confidence            3333334 5577899999999999999999999999999999999999995   6888855 55655555444443221 


Q ss_pred             CCc-cCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhc
Q 048319           84 PPV-LAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEI  138 (348)
Q Consensus        84 ~p~-~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~  138 (348)
                       |. ..              .......++....+..++.+...+...++..+.-++
T Consensus       100 -~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~  140 (448)
T PRK09848        100 -PTDWS--------------HSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQ  140 (448)
T ss_pred             -cCCCC--------------cchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCC
Confidence             21 10              111233445555677888888888888886665543

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.20  E-value=1.2e-05  Score=81.95  Aligned_cols=149  Identities=19%  Similarity=0.059  Sum_probs=110.6

Q ss_pred             hhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCCcccc
Q 048319           24 EVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECIV  103 (348)
Q Consensus        24 ~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~~c~~  103 (348)
                      +..+.+...++...+.|.....+.|++.|.+||+ +|||++++++.+++.++.++.+++                     
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~~i~~~~~a~a---------------------  168 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLFIIFGILTAFA---------------------  168 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhh-cccHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence            3456778888889999999999999999999999 899999999999999998666654                     


Q ss_pred             cchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHhhhcchhhcccc-cchhhHHHH
Q 048319          104 KGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVPVAAIIPISYIK-PWNLRFGVS  182 (348)
Q Consensus       104 ~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in~~~~~~~~yi~-g~~~~F~i~  182 (348)
                       .+...+.+...+.+++.++.-.+...+++|-+.++.   | ..   ...+..+.|+...+++....|+- +|++.+.+.
T Consensus       169 -~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~---R-~~---~~~~~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~  240 (521)
T KOG0255|consen  169 -PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ---R-GL---ALTLGGFFFVGGLMLPAGAAYITRDWRWLFWII  240 (521)
T ss_pred             -CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcch---h-hH---HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence             146788889999999999999999999998777543   1 12   22223344445555555666665 999999987


Q ss_pred             HHHHHHHHHH-HHh-cCccccc
Q 048319          183 AICTVIATLL-FLS-GTCTYEN  202 (348)
Q Consensus       183 ~~~~~i~~~v-f~~-g~~~y~~  202 (348)
                      .+..++.++. ++. .+++++.
T Consensus       241 ~~~~~~~~~~~~l~~Es~rwl~  262 (521)
T KOG0255|consen  241 SIPSGLFLLLWFLPPESPRWLL  262 (521)
T ss_pred             HHHHHHHHHHHHccCcChHHHH
Confidence            6666555443 222 4444443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.20  E-value=1.6e-05  Score=79.00  Aligned_cols=118  Identities=17%  Similarity=0.071  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhc
Q 048319            3 ALLWADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTM   81 (348)
Q Consensus         3 ~~e~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~   81 (348)
                      ...++..+++.-. ..+..|.+..+|.+ ...+.+.......+.+..++.++++||+ ||+|+...+..++.++.+++.+
T Consensus       232 ~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~~~~~~~~  309 (428)
T PF13347_consen  232 LAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAALGFLLLFF  309 (428)
T ss_pred             HHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHHHHHHHHH
Confidence            3456677777767 77788888888888 4455666667777788888889999995 9999999999999999998877


Q ss_pred             ccCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchh
Q 048319           82 STPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINE  142 (348)
Q Consensus        82 s~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~  142 (348)
                      ...                    .+...+++...+.++|.|..-+...++.+|..|+++-+
T Consensus       310 ~~~--------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~  350 (428)
T PF13347_consen  310 LGP--------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWK  350 (428)
T ss_pred             HHh--------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHh
Confidence            521                    13577888888999999999999999999999876543

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.20  E-value=3.8e-05  Score=77.52  Aligned_cols=166  Identities=13%  Similarity=0.108  Sum_probs=101.1

Q ss_pred             HHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhh---hccchH-HHHHHHHHHhhhhhhhhccc
Q 048319            9 CLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDT---IISKYW-MLVFSSLAYSVGIGLLTMST   83 (348)
Q Consensus         9 r~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~---~lGr~~-ti~~~~~i~~~G~~ll~~s~   83 (348)
                      .+.+..+ ..+..|+++.+|++.+.++.+..+...+--+..++.|+++||   .+|||| -++++.+...++..++... 
T Consensus        19 ~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~-   97 (473)
T PRK10429         19 DFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSA-   97 (473)
T ss_pred             hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcC-
Confidence            3334444 557889999999999999999999999999999999999995   369955 5556777777777666532 


Q ss_pred             CCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh-
Q 048319           84 PPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP-  162 (348)
Q Consensus        84 ~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in-  162 (348)
                       |...              .......+++...+..++...+.....++++|.-+  |++||      .+.++|-....| 
T Consensus        98 -p~~~--------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~--~~~eR------~~l~~~~~~~~~i  154 (473)
T PRK10429         98 -HLFE--------------GTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTL--DKRER------EQLVPYPRFFASL  154 (473)
T ss_pred             -CCCC--------------ccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCC--CHHHH------HHHHHHHHHHHHH
Confidence             2111              11123333334445567777778888888887554  34443      334554333333 


Q ss_pred             --hhc-chhhcc---cc------cchhhHHHHHHHHHHHHHHHHhcCc
Q 048319          163 --VAA-IIPISY---IK------PWNLRFGVSAICTVIATLLFLSGTC  198 (348)
Q Consensus       163 --~~~-~~~~~y---i~------g~~~~F~i~~~~~~i~~~vf~~g~~  198 (348)
                        .+. ....+.   ..      ||.....+.++.++++.++-+.+.|
T Consensus       155 g~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~  202 (473)
T PRK10429        155 AGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVH  202 (473)
T ss_pred             HHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCce
Confidence              221 111111   11      5666666666665554444444333

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.19  E-value=1.8e-05  Score=79.68  Aligned_cols=143  Identities=13%  Similarity=0.084  Sum_probs=109.9

Q ss_pred             HHHHHhhhhhCCchHH-HHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCC
Q 048319           17 TMMEYLTEVWKISVVH-AAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCS   95 (348)
Q Consensus        17 ~L~~Yl~~~l~~~~~~-A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~   95 (348)
                      .+..|+.+++|++..+ .+.+..+|.-.--++.+++|+++|| +|.|+.+.++.+...+..+++.+++            
T Consensus        47 ~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDr-lG~K~vL~l~~l~Wsl~t~L~~fa~------------  113 (511)
T TIGR00806        47 FITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDY-LRYKPVLVLQALSFVCVWLLLLLGT------------  113 (511)
T ss_pred             HHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHH------------
Confidence            3677899999999999 9999999999888999999999999 6999999999999999888887752            


Q ss_pred             CCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhccc
Q 048319           96 EYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYI  172 (348)
Q Consensus        96 ~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi  172 (348)
                                +...+.+..++.++|.|..- .....++.-++++   |   |   .+...++..+.+   ++++.+..++
T Consensus       114 ----------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~k---E---R---~ratsi~~sg~~vG~~Ia~~L~qll  173 (511)
T TIGR00806       114 ----------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPS---R---Y---QRAAAYSRAAVLLGVFLSSVLGQLL  173 (511)
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHH---H---H---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      35678888899999999887 7777777777643   3   3   556666667777   5555555554


Q ss_pred             c--cchhhH---HHHHHHHHHHHHH
Q 048319          173 K--PWNLRF---GVSAICTVIATLL  192 (348)
Q Consensus       173 ~--g~~~~F---~i~~~~~~i~~~v  192 (348)
                      .  ||+.-+   .|+...+.+++++
T Consensus       174 ~s~gWr~y~~Ln~Isl~s~~~a~~~  198 (511)
T TIGR00806       174 VTLGWISYSTLNIISLVFMTFSVFL  198 (511)
T ss_pred             HhcCchhHHHHHHHHHHHHHHHHHH
Confidence            4  666543   3566666665543

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.18  E-value=1.8e-05  Score=77.46  Aligned_cols=160  Identities=13%  Similarity=0.063  Sum_probs=120.7

Q ss_pred             hhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCCccccc
Q 048319           25 VWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECIVK  104 (348)
Q Consensus        25 ~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~~c~~~  104 (348)
                      .++.++++-+.+...+-....+...+-|.+.|| +|++-.+++|.++.+...+++++..                     
T Consensus       100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~-iGy~ipm~~Gl~vmf~sTilFafg~---------------------  157 (464)
T KOG3764|consen  100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDR-IGYKIPMVAGLFVMFLSTILFAFGN---------------------  157 (464)
T ss_pred             CccccccchhHHHHHHHHHHHHhcccchhhHHH-hccccHHHHHHHHHHHHHHHHHHcc---------------------
Confidence            467788889999999999999999999999997 7999999999999999999988752                     


Q ss_pred             chhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhccc-c--cchhh
Q 048319          105 GHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYI-K--PWNLR  178 (348)
Q Consensus       105 ~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi-~--g~~~~  178 (348)
                       ..+.++++..+-++|......+-.++.||.|+++..     |   .+....---.+.   ++++-.-+.+ |  |+.+.
T Consensus       158 -sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r---~~vmGialgfislG~lvgPpfGGilYe~~Gk~aP  228 (464)
T KOG3764|consen  158 -SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----R---GSVMGIALGFISLGVLVGPPFGGILYEFAGKSAP  228 (464)
T ss_pred             -hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----h---hHHHHHHHHHHhccceecCCcccchHhhcCCcCc
Confidence             367899999999999999999999999999998753     2   333333222222   4444333333 3  99999


Q ss_pred             HHHHHHHHHHHHHHH-HhcCcccccC--CCCCCchhHHHH
Q 048319          179 FGVSAICTVIATLLF-LSGTCTYENK--EPEGSPLTSVFR  215 (348)
Q Consensus       179 F~i~~~~~~i~~~vf-~~g~~~y~~~--~p~gs~l~~~~~  215 (348)
                      |+|.++++++..++- +.-.|.-...  .+++.|+.++.+
T Consensus       229 FlVL~~v~Lld~~L~l~vi~p~~~~~~~~~~~~~~~~Ll~  268 (464)
T KOG3764|consen  229 FLVLAIVLLLDGALQLLVIEPTEMDPDSTEQGTPMWSLLM  268 (464)
T ss_pred             HHHHHHHHHHHHHHHHheeCccccCccccccCccHHHHHh
Confidence            999888877665544 4444432222  467778877765

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.18  E-value=4.9e-05  Score=77.31  Aligned_cols=162  Identities=12%  Similarity=0.014  Sum_probs=97.2

Q ss_pred             HHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHH-HHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCC
Q 048319            8 DCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIF-SGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPP   85 (348)
Q Consensus         8 Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~-~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p   85 (348)
                      -.++.++. .....|+.+.+|++..+.+.+.... .....+..+++|+++|| +||+|.+.++.++..++..++.+.+..
T Consensus       234 ~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr-~g~~~~l~i~~~l~~l~~l~~~~l~~~  312 (491)
T PRK11010        234 YKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQR-LSLFRALMIFGILQGVSNAGYWLLSIT  312 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34455555 5566777778999999998887544 35677888999999999 599998888776656554333221110


Q ss_pred             ccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---
Q 048319           86 VLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---  162 (348)
Q Consensus        86 ~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---  162 (348)
                         +               .+...++..+.+..+..|..-+...++..+..+++-+         ...+..++...+   
T Consensus       313 ---~---------------~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~---------~t~~gl~~s~~~lg~  365 (491)
T PRK11010        313 ---D---------------KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFS---------ATQFALLSALSAVGR  365 (491)
T ss_pred             ---c---------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc---------HHHHHHHHHHHHHHH
Confidence               0               0122233334443333332224445666665554432         223444444444   


Q ss_pred             hhcchhhcccc---cchhhHHHHHHHHHHHHHHHHhcC
Q 048319          163 VAAIIPISYIK---PWNLRFGVSAICTVIATLLFLSGT  197 (348)
Q Consensus       163 ~~~~~~~~yi~---g~~~~F~i~~~~~~i~~~vf~~g~  197 (348)
                      .+++.+.+++.   ||...|.+.+++.+++++....-+
T Consensus       366 ~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~  403 (491)
T PRK11010        366 VYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR  403 (491)
T ss_pred             HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455553   999999998888888776665543

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.17  E-value=9.9e-05  Score=72.43  Aligned_cols=138  Identities=12%  Similarity=0.016  Sum_probs=91.5

Q ss_pred             HHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccC
Q 048319           10 LAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLA   88 (348)
Q Consensus        10 ~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~   88 (348)
                      +.+++. ..+..|+.+.+|++..+.+...........+..++.|+++|| +|++|.+.++.++..+|.+++.+...+  .
T Consensus       229 ~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r-~~~~~~~~~~~~~~~~g~~~~~~~~~~--~  305 (406)
T PRK15402        229 LPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSR-RPLRSLIRMGLWPMVAGLLLAALATVI--S  305 (406)
T ss_pred             HHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHHc--c
Confidence            334444 445667777899999888877666666677788899999999 599999999999888888877664211  0


Q ss_pred             CCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHhhhcchh
Q 048319           89 GFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVPVAAIIP  168 (348)
Q Consensus        89 ~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in~~~~~~  168 (348)
                                     ......+++++.+.++|.|..-|......-+..+    +++.+.   .+.++...+..+.+++.+
T Consensus       306 ---------------~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~----~~~g~~---~~~~~~~~~~~~~~g~~~  363 (406)
T PRK15402        306 ---------------SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFSSD----VSKGTV---SAAMGMLSMLIFTVGIEL  363 (406)
T ss_pred             ---------------cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcc----ccccHH---HHHHHHHHHHHHHHHHHH
Confidence                           1124556778888999999887776665433222    121222   444454444444666666


Q ss_pred             hccc
Q 048319          169 ISYI  172 (348)
Q Consensus       169 ~~yi  172 (348)
                      .+++
T Consensus       364 ~~~l  367 (406)
T PRK15402        364 SKHA  367 (406)
T ss_pred             HHhc
Confidence            6655

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.16  E-value=4.4e-05  Score=78.40  Aligned_cols=148  Identities=16%  Similarity=-0.007  Sum_probs=110.2

Q ss_pred             hhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCCccccc
Q 048319           25 VWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECIVK  104 (348)
Q Consensus        25 ~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~~c~~~  104 (348)
                      .+.-|....+.+..+-..-..++.+++|.++||+ .|||.++.+-++..+..+++.+.+.-.                 .
T Consensus        39 ~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~~~~~L~~l~~~~-----------------~  100 (524)
T PF05977_consen   39 QLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRALVALLLAVLAFFG-----------------L  100 (524)
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHHHHHHHHHHhC-----------------c
Confidence            4555666666666666666678889999999995 999999999998887776666543311                 1


Q ss_pred             chhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhccc-c--cchhh
Q 048319          105 GHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYI-K--PWNLR  178 (348)
Q Consensus       105 ~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi-~--g~~~~  178 (348)
                      .+.+.+++..+++++|.+...|.-++.+.+..++++      .   .+...+.-...|   ++|+.+.+.+ .  |-...
T Consensus       101 ~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L---~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~  171 (524)
T PF05977_consen  101 LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------L---PAANALNSISFNIARIIGPALGGILVAFFGAAAA  171 (524)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------H---HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            235677777789999999999999999999988654      2   455666667777   7777766644 3  88889


Q ss_pred             HHHHHHHHHHHHHHHHhcCcc
Q 048319          179 FGVSAICTVIATLLFLSGTCT  199 (348)
Q Consensus       179 F~i~~~~~~i~~~vf~~g~~~  199 (348)
                      |.+.+++.+++.+++..-++.
T Consensus       172 f~inalsfl~~i~~l~~~~~~  192 (524)
T PF05977_consen  172 FLINALSFLISILALLRWKPP  192 (524)
T ss_pred             HHHHHHHHHHHHHHHHHcccc
Confidence            999999888877666555443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK10133 L-fucose transporter; Provisional

Probab=98.15  E-value=3.8e-05  Score=76.94  Aligned_cols=153  Identities=11%  Similarity=0.022  Sum_probs=106.6

Q ss_pred             HHHHHHhH-HHHHHHh-hhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCC
Q 048319            8 DCLAQFVM-WTMMEYL-TEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPP   85 (348)
Q Consensus         8 Er~a~yg~-~~L~~Yl-~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p   85 (348)
                      --.+.++. ..+..|+ ++.+|++..+++.....+.....+..+++|+++|| +||+|++..+..+..++..+..+.  |
T Consensus       270 ~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r-~g~~~~l~~~~~~~~~~~~~~~~~--~  346 (438)
T PRK10133        270 YVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAMALCLISAFA--G  346 (438)
T ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHc--C
Confidence            33445555 5556675 56789999999999999999999999999999999 599999999988877766554432  1


Q ss_pred             ccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHhhhc
Q 048319           86 VLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVPVAA  165 (348)
Q Consensus        86 ~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in~~~  165 (348)
                                          .. .-+.++.+.++|.|.+-|++.+...++++++..    .-   .+..+ ..+..+.++
T Consensus       347 --------------------~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~~----~a---s~l~~-~~~~g~~~~  397 (438)
T PRK10133        347 --------------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTK----YG---SSFIV-MTIIGGGIV  397 (438)
T ss_pred             --------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhhc----cc---hhHHh-HHhccchHH
Confidence                                01 124567789999999999999999988765421    11   33333 222223444


Q ss_pred             chhhcccc---c-chhhHHHHHHHHHHHHHH
Q 048319          166 IIPISYIK---P-WNLRFGVSAICTVIATLL  192 (348)
Q Consensus       166 ~~~~~yi~---g-~~~~F~i~~~~~~i~~~v  192 (348)
                      +.+.+++.   | -+.+|.++.++.+.....
T Consensus       398 ~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~  428 (438)
T PRK10133        398 TPVMGFVSDAAGNIPTAELIPALCFAVIFIF  428 (438)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            44555543   5 678888887776655443

>TIGR00788 fbt folate/biopterin transporter

Probab=98.14  E-value=7.4e-05  Score=75.60  Aligned_cols=157  Identities=17%  Similarity=0.127  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhcc-----chHHHHHHHHHHh-hhh
Q 048319            4 LLWADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIIS-----KYWMLVFSSLAYS-VGI   76 (348)
Q Consensus         4 ~e~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lG-----r~~ti~~~~~i~~-~G~   76 (348)
                      +-+.+-+. +-+ ..+..++.+.+|++.++.+...+....-..+-|+ .|.++|++ +     ||+-++++.++.. +++
T Consensus        34 ~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~~~~l~~~~~~  110 (468)
T TIGR00788        34 VLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVLSGLLGSAILY  110 (468)
T ss_pred             HHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHHHHHHHHHHHH
Confidence            45667777 445 6777888889999999987776665554445454 99999996 6     7777778776652 333


Q ss_pred             hhhhcccCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHH
Q 048319           77 GLLTMSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKL  156 (348)
Q Consensus        77 ~ll~~s~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~  156 (348)
                      ..+...      +               .......+.+.+++++.+.......++..|+.+ ++++   ..   ....++
T Consensus       111 ~~l~~~------~---------------~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~---~~---~~~~s~  162 (468)
T TIGR00788       111 GLLPGK------V---------------SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS---AG---PSLVSW  162 (468)
T ss_pred             Hhcccc------c---------------chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC---cC---CCeeeH
Confidence            222211      1               012223336778999999999999999999998 3322   22   445667


Q ss_pred             HHHHHh---hhcchhhcccc---cchhhHHHHHHHHHHHHH
Q 048319          157 LLFMVP---VAAIIPISYIK---PWNLRFGVSAICTVIATL  191 (348)
Q Consensus       157 ~y~~in---~~~~~~~~yi~---g~~~~F~i~~~~~~i~~~  191 (348)
                      .|.+.+   +++..+.+++.   ||+..|.+.++..++..+
T Consensus       163 ~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~  203 (468)
T TIGR00788       163 MWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLF  203 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Confidence            777655   66666666554   899999998887777644

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR01272 gluP glucose/galactose transporter

Probab=98.14  E-value=3.4e-05  Score=73.84  Aligned_cols=136  Identities=12%  Similarity=0.030  Sum_probs=98.6

Q ss_pred             HHHHHHhhhh--hCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCC
Q 048319           16 WTMMEYLTEV--WKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGT   93 (348)
Q Consensus        16 ~~L~~Yl~~~--l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~   93 (348)
                      ..+..|+.+.  +|++..+++.....+.+...+..+++++++|| +|++|.+.++..+..++.+++....          
T Consensus       161 ~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r-~g~~~~l~~~~~l~~~~~~l~~~~~----------  229 (310)
T TIGR01272       161 SFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPM-ISQGRYLAFNAFLAVLLSIGAALTH----------  229 (310)
T ss_pred             HHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHcC----------
Confidence            4478888754  79999999999999999999999999999999 6999999999888888775554321          


Q ss_pred             CCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh----hhcchhh
Q 048319           94 CSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP----VAAIIPI  169 (348)
Q Consensus        94 c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in----~~~~~~~  169 (348)
                                  ... ...++.++++|.+.+-|++.+...+.++++..     +   .+..    ..++    .+.+.++
T Consensus       230 ------------~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~~-----~---asai----~~~~~~Gg~i~P~l~  284 (310)
T TIGR01272       230 ------------GYV-AMWFVLALGLFNSIMFPTIFSLALNALGRHTS-----Q---GSGI----LCLAIVGGAIVPLLQ  284 (310)
T ss_pred             ------------CHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-----h---hHHH----HHHHHhcchHHHHHH
Confidence                        011 12366688999999999999999887775421     2   2332    1233    4444445


Q ss_pred             cccc---cchhhHHHHHHHHH
Q 048319          170 SYIK---PWNLRFGVSAICTV  187 (348)
Q Consensus       170 ~yi~---g~~~~F~i~~~~~~  187 (348)
                      +++.   |.+.+|.++.++.+
T Consensus       285 G~lad~~g~~~a~~v~~~~~~  305 (310)
T TIGR01272       285 GSLADCLGIQLAFALPVPCYL  305 (310)
T ss_pred             HHHHHhccchHHHHHHHHHHH
Confidence            5443   77888887665544

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.14  E-value=4e-05  Score=76.21  Aligned_cols=158  Identities=13%  Similarity=0.017  Sum_probs=90.5

Q ss_pred             HHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCcc
Q 048319            9 CLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVL   87 (348)
Q Consensus         9 r~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~   87 (348)
                      -+.+|++ .-+..|+.+.+|++..+++...........+...++|+++|| +|||+.+.++..+..+....+... .+. 
T Consensus       256 ~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~-~~~-  332 (432)
T PRK10406        256 SLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDK-IGRRTSMLCFGSLAALFTVPILSA-LQN-  332 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHHHHHHH-HHc-
Confidence            4567888 777888888899999888877777666666777788999999 599998887766543332211110 000 


Q ss_pred             CCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh-hhcc
Q 048319           88 AGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP-VAAI  166 (348)
Q Consensus        88 ~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in-~~~~  166 (348)
                                      ..+....+..+.+..++.|..-+...+..+|.|+.+.      |   .....+-|...| ..+.
T Consensus       333 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r---~t~~g~~~~~g~~~~g~  387 (432)
T PRK10406        333 ----------------VSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------R---ALGVGLSYAVANALFGG  387 (432)
T ss_pred             ----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------c---chhhhHHHHHHHHHHHh
Confidence                            0011111111111112222333456677888887542      4   667777777666 2232


Q ss_pred             ---hhhcccc--c-chhhHHHHHHHHHHHHHHHH
Q 048319          167 ---IPISYIK--P-WNLRFGVSAICTVIATLLFL  194 (348)
Q Consensus       167 ---~~~~yi~--g-~~~~F~i~~~~~~i~~~vf~  194 (348)
                         .+..+++  | |...|.+.++..+++.+..+
T Consensus       388 ~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~  421 (432)
T PRK10406        388 SAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSL  421 (432)
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence               2223343  4 55566655555555544433

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.13  E-value=7.6e-05  Score=74.33  Aligned_cols=155  Identities=15%  Similarity=0.130  Sum_probs=87.5

Q ss_pred             HHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccc--hHHHHHHHHHHhhhhhhhhcccCC
Q 048319            9 CLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISK--YWMLVFSSLAYSVGIGLLTMSTPP   85 (348)
Q Consensus         9 r~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr--~~ti~~~~~i~~~G~~ll~~s~~p   85 (348)
                      -+.++++ ..+..|+.+.+|++..+++.....+.....+..+++|+++||+.+|  ++......+...++...+.+.  |
T Consensus       256 ~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~--~  333 (434)
T PRK11663        256 YVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLM--P  333 (434)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHc--c
Confidence            3444555 5567788778999999999999999999999999999999997533  222222221112222221111  1


Q ss_pred             ccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcc--hhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh-
Q 048319           86 VLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVE--STEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP-  162 (348)
Q Consensus        86 ~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~--v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in-  162 (348)
                      .  .                +....+..  +..+|.+..-|.  .....+|.++    ++.  +   .....+.++..+ 
T Consensus       334 ~--~----------------~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~----~~~--~---g~~~g~~~~~~~~  384 (434)
T PRK11663        334 F--A----------------SYVMQAAC--FFTIGFFVFGPQMLIGMAAAECSH----KEA--A---GAATGFVGLFAYL  384 (434)
T ss_pred             c--c----------------cHHHHHHH--HHHHHHHHhhHHHHHHHHHHhccc----Hhh--H---HhHHHHHHHHHHH
Confidence            0  0                11122222  222333222222  2233344332    221  3   445555555555 


Q ss_pred             --hhcchhhcccc---cchhhHHHHHHHHHHHHHHHH
Q 048319          163 --VAAIIPISYIK---PWNLRFGVSAICTVIATLLFL  194 (348)
Q Consensus       163 --~~~~~~~~yi~---g~~~~F~i~~~~~~i~~~vf~  194 (348)
                        .+++.+.+++.   ||...|.+.+++.+++.++.+
T Consensus       385 g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~  421 (434)
T PRK11663        385 GAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLL  421 (434)
T ss_pred             HHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence              67777777764   999999988877776655444

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.13  E-value=7.8e-05  Score=77.36  Aligned_cols=145  Identities=13%  Similarity=0.059  Sum_probs=96.9

Q ss_pred             HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCC
Q 048319           16 WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCS   95 (348)
Q Consensus        16 ~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~   95 (348)
                      ++...|+..++|-+ ...+.+...+....-....+.|-++|. +|||+.++.+.+++.+|.++.+-+             
T Consensus        64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDl-fGRr~~~i~g~~l~vvG~Iv~atA-------------  128 (599)
T PF06609_consen   64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDL-FGRRYFFIIGSLLGVVGSIVCATA-------------  128 (599)
T ss_pred             HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHH-hcchHHHHHHHHHHHhHHHHhhcC-------------
Confidence            44556777888876 445577777887777888889999999 599999999999999999886543             


Q ss_pred             CCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh-hhcchhhccc--
Q 048319           96 EYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP-VAAIIPISYI--  172 (348)
Q Consensus        96 ~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in-~~~~~~~~yi--  172 (348)
                               .+...+..|..+.++|.|... ......+|..+.+.    |...  ..+..+.+ .++ ..++.+...+  
T Consensus       129 ---------~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~----R~~~--~~~~~~~~-i~~~~~~~~ia~~~~~  191 (599)
T PF06609_consen  129 ---------QNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW----RGLG--LAIASIPF-IITTWISPLIAQLFAA  191 (599)
T ss_pred             ---------CcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch----hhhH--hHHHHHHH-HhhhcccHHHHHHhcc
Confidence                     135678899999999988775 34555676664321    1110  11111111 111 2333333222  


Q ss_pred             c-cchhhHHHHHHHHHHHHHH
Q 048319          173 K-PWNLRFGVSAICTVIATLL  192 (348)
Q Consensus       173 ~-g~~~~F~i~~~~~~i~~~v  192 (348)
                      + +|||.|.+.++...++++.
T Consensus       192 ~~~WRw~~~~~~i~~~i~~vl  212 (599)
T PF06609_consen  192 HSGWRWIFYIFIIWSGIALVL  212 (599)
T ss_pred             CCCcchHHHHHHHHHHHHHHH
Confidence            3 9999999988877776544

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.12  E-value=4.2e-05  Score=75.56  Aligned_cols=147  Identities=10%  Similarity=0.068  Sum_probs=96.3

Q ss_pred             HHHHHHhhhhh---CCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCC
Q 048319           16 WTMMEYLTEVW---KISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVG   92 (348)
Q Consensus        16 ~~L~~Yl~~~l---~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~   92 (348)
                      ..+..|+.+.+   +.+....+.+.........+..+++|+++|| +||++.+.++.++..++.+++..+.         
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~l~~~~~~l~~~~~---------  313 (420)
T PRK09528        244 QQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINR-IGAKNALLLAGTIMAVRIIGSGFAT---------  313 (420)
T ss_pred             HHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhHHHHHHHHHHHHHHHhcc---------
Confidence            44556665543   4555666677777766667888899999999 5999999999999998887776531         


Q ss_pred             CCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHH-HHHHHh---hhcchh
Q 048319           93 TCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKL-LLFMVP---VAAIIP  168 (348)
Q Consensus        93 ~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~-~y~~in---~~~~~~  168 (348)
                                   +...++....+.+++.+...+....+..+.++++.      +   ...+.. +.+..+   .+++.+
T Consensus       314 -------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~---a~~~~~~~~~~~~lg~~ig~~~  371 (420)
T PRK09528        314 -------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------S---ATIYLVGFQFAKQLGAVFLSTL  371 (420)
T ss_pred             -------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------e---eeeeeehHHHHHHHHHHHHHHH
Confidence                         12345555666777777776766677777665432      2   222222 222222   566666


Q ss_pred             hcccc---cchhhHHHHHHHHHHHHHHHH
Q 048319          169 ISYIK---PWNLRFGVSAICTVIATLLFL  194 (348)
Q Consensus       169 ~~yi~---g~~~~F~i~~~~~~i~~~vf~  194 (348)
                      .+++-   ||+..|.+.++..++..++.+
T Consensus       372 ~G~l~~~~G~~~~f~~~~~~~~i~~~~~~  400 (420)
T PRK09528        372 AGNLYDSIGFQGTYLILGGIVLLFTLISV  400 (420)
T ss_pred             HHHHHHhhCchHHHHHHHHHHHHHHHHHH
Confidence            66654   999999987776665554443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.10  E-value=8e-05  Score=71.71  Aligned_cols=108  Identities=10%  Similarity=0.048  Sum_probs=79.5

Q ss_pred             HHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCC
Q 048319           11 AQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAG   89 (348)
Q Consensus        11 a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~   89 (348)
                      .+++. ..+..|+.+.+|+++.+++.+.........+..+++|++.|| +||++.+.++..+..++.+++.....+.   
T Consensus       221 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  296 (385)
T TIGR00710       221 GFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKK-WGAKSLLRMGLILFAVSAVLLEITAILG---  296 (385)
T ss_pred             HHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence            34444 444557777899999999999888888888999999999999 5999999999888888877766543211   


Q ss_pred             CCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhh
Q 048319           90 FVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQL  136 (348)
Q Consensus        90 ~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~  136 (348)
                                    ......++....+.++|.+..-+.......|.+
T Consensus       297 --------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  329 (385)
T TIGR00710       297 --------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDF  329 (385)
T ss_pred             --------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence                          012344555566788888888887777666544

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK11462 putative transporter; Provisional

Probab=98.08  E-value=0.00016  Score=72.94  Aligned_cols=158  Identities=13%  Similarity=0.152  Sum_probs=98.0

Q ss_pred             HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhh---hccchHHHH-HHHHHHhhhhhhhhcccCCccCCCC
Q 048319           16 WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDT---IISKYWMLV-FSSLAYSVGIGLLTMSTPPVLAGFV   91 (348)
Q Consensus        16 ~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~---~lGr~~ti~-~~~~i~~~G~~ll~~s~~p~~~~~~   91 (348)
                      ..|..|.++.+|.+.+.++.+..+-..+=-+.-++-|+++||   .+||||--+ ++.+...++.++++..  |...+  
T Consensus        30 ~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~--p~~s~--  105 (460)
T PRK11462         30 LYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYST--PDLSM--  105 (460)
T ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhC--CCCCc--
Confidence            457788899999999999999999888888999999999998   489987665 5667777777776642  32111  


Q ss_pred             CCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchh
Q 048319           92 GTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIP  168 (348)
Q Consensus        92 ~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~  168 (348)
                                  ..+...+++...+..++.-.+.-.-.+++++.-+  |++||      .+..+|.-...+   +++..+
T Consensus       106 ------------~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~--d~~eR------t~l~s~r~~~~~iG~~~~~~~  165 (460)
T PRK11462        106 ------------NGKMIYAAITYTLLTLLYTVVNIPYCALGGVITN--DPTQR------ISLQSWRFVLATAGGMLSTVL  165 (460)
T ss_pred             ------------chHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcC--CHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence                        1223333334344566666666677778886655  35554      344455444444   222222


Q ss_pred             -hcccc---------cchhhHHHHHHHHHHHHHHHHhcC
Q 048319          169 -ISYIK---------PWNLRFGVSAICTVIATLLFLSGT  197 (348)
Q Consensus       169 -~~yi~---------g~~~~F~i~~~~~~i~~~vf~~g~  197 (348)
                       .+.++         ||.....+-++..+++..+...+.
T Consensus       166 ~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~  204 (460)
T PRK11462        166 MMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTT  204 (460)
T ss_pred             HHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence             12221         566666555555544444444433

>TIGR00901 2A0125 AmpG-related permease

Probab=98.06  E-value=5.2e-05  Score=72.90  Aligned_cols=136  Identities=10%  Similarity=0.025  Sum_probs=97.2

Q ss_pred             HHHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHH-HHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcc
Q 048319            5 LWADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSG-LVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMS   82 (348)
Q Consensus         5 e~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~-~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s   82 (348)
                      -++-.++++++ ..+..|+++ +|++..+.+.+...... ...+..+++|+++|| +||+|.+.++.++..++..++...
T Consensus       218 ~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~~~~~~~~~~~~  295 (356)
T TIGR00901       218 IVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQP-LNILYALLLFGIVQALTNAGFVWL  295 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567888888 888889887 99999999888877664 456778899999999 599999999998888876655442


Q ss_pred             cCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh
Q 048319           83 TPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP  162 (348)
Q Consensus        83 ~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in  162 (348)
                      +. ..+.     .+.     ...+...+.....+.+++.|..-+...++..+..+++.      +   .+.|..++...|
T Consensus       296 ~~-~~~~-----~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~---g~~~g~~~~~~~  355 (356)
T TIGR00901       296 AS-NGHH-----DGI-----TFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------G---ATQMALLSSLSA  355 (356)
T ss_pred             Hh-cCcc-----ccc-----ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------c---HHHHHHHHHHHh
Confidence            11 0000     000     00123455566667789999999999999998887653      3   667777666544

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.04  E-value=0.00024  Score=71.08  Aligned_cols=145  Identities=12%  Similarity=0.035  Sum_probs=88.6

Q ss_pred             HhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCCc
Q 048319           21 YLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPE  100 (348)
Q Consensus        21 Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~~  100 (348)
                      ++.+.+|++...+............+..+++|+++|| +|||+.++++.++..++.+++.+...+.              
T Consensus       296 ~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~g~r~~~i~~~~~~~v~~~~l~~~~~~~--------------  360 (479)
T PRK10077        296 EIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGMFSLGTAFYTQ--------------  360 (479)
T ss_pred             HHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH-hcChHHHHHhHHHHHHHHHHHHHHHhcC--------------
Confidence            3345678887777666666666677888999999999 5999999999999999988776432110              


Q ss_pred             ccccchhHHHHHHHHHHHHhccc-CCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhh------c
Q 048319          101 CIVKGHKILFYAALGLLAFASSS-CSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPI------S  170 (348)
Q Consensus       101 c~~~~~~~~~~~~L~liaiG~G~-~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~------~  170 (348)
                          ........++.+.+.+.+. .-|+..+...|.++.+.      |   .....+.+...+   .+++.+.      +
T Consensus       361 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r---~~~~g~~~~~~~~g~~~~~~~~p~~~~~~  427 (479)
T PRK10077        361 ----APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------R---GKALAIAVAAQWIANYFVSWTFPMMDKNS  427 (479)
T ss_pred             ----cccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhH------H---HHHHHHHHHHHHHHHHHHHHHhHHHHhcc
Confidence                0112223344444444432 45788888888775321      3   445555554444   3332222      2


Q ss_pred             ccc---cchhhHHHHHHHHHHHHHHH
Q 048319          171 YIK---PWNLRFGVSAICTVIATLLF  193 (348)
Q Consensus       171 yi~---g~~~~F~i~~~~~~i~~~vf  193 (348)
                      |+.   ||+..|.+-++..+++.++.
T Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (479)
T PRK10077        428 WLVAHFHNGFSYWIYGCMGVLAALFM  453 (479)
T ss_pred             chhhhccCccHHHHHHHHHHHHHHHH
Confidence            332   77888887665555554443

>PRK09848 glucuronide transporter; Provisional

Probab=98.04  E-value=6.8e-05  Score=74.88  Aligned_cols=166  Identities=10%  Similarity=0.021  Sum_probs=104.3

Q ss_pred             HHHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhccc
Q 048319            5 LWADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMST   83 (348)
Q Consensus         5 e~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~   83 (348)
                      .++--+++++. .....|+++.+|.+...+............+...+.++++|| +|+++++.++.++..+|.+++... 
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r-~g~~~~~~~g~~~~~i~~~~~~~~-  314 (448)
T PRK09848        237 ALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVAR-IGKKNTFLIGALLGTCGYLLFFWV-  314 (448)
T ss_pred             HHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHc-
Confidence            33444555555 555567777888876655543333333455677788999999 599999999999999998777643 


Q ss_pred             CCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhh-hhhhhhhhhHHHHHHHHHh
Q 048319           84 PPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEH-ISLSLIQREFFKLLLFMVP  162 (348)
Q Consensus        84 ~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e-~~~~~~~~~~f~~~y~~in  162 (348)
                       |                  ..+.+.+++++.+.++|.|...+...++.+|.-|+++-+. +|+.   ..++..+-++.+
T Consensus       315 -~------------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~---G~~~~~~~~~~k  372 (448)
T PRK09848        315 -S------------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIE---GLTYSLFSFTRK  372 (448)
T ss_pred             -C------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccch---hHHHHHHHHHHH
Confidence             1                  0123456677888999999999999999998877653211 1112   334445444444


Q ss_pred             ---hhcchhhccc-----------c------cchhhH-HHHHHHHHHHHHHHH
Q 048319          163 ---VAAIIPISYI-----------K------PWNLRF-GVSAICTVIATLLFL  194 (348)
Q Consensus       163 ---~~~~~~~~yi-----------~------g~~~~F-~i~~~~~~i~~~vf~  194 (348)
                         .++..+.+.+           |      +.+..+ .+|+++++++.+++.
T Consensus       373 lg~aig~~i~g~~l~~~G~~~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~  425 (448)
T PRK09848        373 CGQAIGGSIPAFILGLSGYIANQVQTPEVIMGIRTSIALVPCGFMLLAFVIIW  425 (448)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               3333332221           1      333443 467777777776553

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.03  E-value=0.00011  Score=74.58  Aligned_cols=160  Identities=14%  Similarity=0.063  Sum_probs=117.8

Q ss_pred             HHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccch--HHHHHHHHHHhhhhhhhhcccCCcc
Q 048319           11 AQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKY--WMLVFSSLAYSVGIGLLTMSTPPVL   87 (348)
Q Consensus        11 a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~--~ti~~~~~i~~~G~~ll~~s~~p~~   87 (348)
                      +...+ ..-..|.++.+|++..+-..+.-.-+..+.+..+++|++.|| +|.+  +++.++.+++.+-.+.-.+.-.|..
T Consensus       296 g~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r-~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~  374 (477)
T PF11700_consen  296 GVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDR-FGPKTKRTLLISLILWIIIPLYGLFGFWPSF  374 (477)
T ss_pred             HHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            45556 677788999999999999888888888999999999999999 5999  8988888776331111111101110


Q ss_pred             CCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hh
Q 048319           88 AGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VA  164 (348)
Q Consensus        88 ~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~  164 (348)
                      .              .-.+.+.+++.=.++++..|+..+..-++.++..+++.      .   ..+|..|-+..-   .+
T Consensus       375 ~--------------g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e---~efFgly~i~gk~ss~l  431 (477)
T PF11700_consen  375 F--------------GLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------E---AEFFGLYAITGKASSWL  431 (477)
T ss_pred             c--------------CcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------h---hHHHHHHHHHHHHHHHH
Confidence            0              00123446665568999999999999999998887653      2   678998887666   88


Q ss_pred             cchhhcccc----cchhhHHHHHHHHHHHHHHHH
Q 048319          165 AIIPISYIK----PWNLRFGVSAICTVIATLLFL  194 (348)
Q Consensus       165 ~~~~~~yi~----g~~~~F~i~~~~~~i~~~vf~  194 (348)
                      ++.+.+.+.    +.+.+|..-.+.++++++++.
T Consensus       432 GPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~  465 (477)
T PF11700_consen  432 GPLLFGLITDATGSQRYGFLFLLVLFLIGLILLF  465 (477)
T ss_pred             HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHh
Confidence            888888775    588999988888888887664

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.02  E-value=7.1e-05  Score=75.99  Aligned_cols=114  Identities=13%  Similarity=0.012  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcc
Q 048319            4 LLWADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMS   82 (348)
Q Consensus         4 ~e~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s   82 (348)
                      ..++--+++++. ..+..|+++.+|++..+++.....+.....+..+++|++.|| +||++.+..+.++..+|.+++...
T Consensus       267 ~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~g~~~~~~~~~~l~~~  345 (495)
T PRK14995        267 MAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSR-LGLRLVATGGMALSALSFYGLAMT  345 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHHHHHHh
Confidence            344555677888 778889999999999999999999999999999999999999 599999999998888888766543


Q ss_pred             cCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhh
Q 048319           83 TPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLE  137 (348)
Q Consensus        83 ~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~  137 (348)
                      ..                   .......+..+.+.++|.|..-+.......+..+
T Consensus       346 ~~-------------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~  381 (495)
T PRK14995        346 DF-------------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAP  381 (495)
T ss_pred             cC-------------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC
Confidence            11                   0112344567778899999887777776665444

>TIGR00897 2A0118 polyol permease family

Probab=98.02  E-value=0.00016  Score=71.18  Aligned_cols=160  Identities=10%  Similarity=-0.054  Sum_probs=99.2

Q ss_pred             HHHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHH-HHHHHHhhhhhhhhcc
Q 048319            5 LWADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLV-FSSLAYSVGIGLLTMS   82 (348)
Q Consensus         5 e~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~-~~~~i~~~G~~ll~~s   82 (348)
                      -++.-.++++. ..+-.|+. .+|++..+++.+...+.....+..++.|+++|| +||++.+. .+.+...++.+.+...
T Consensus       231 ~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~l~~~~~~~~l~~~  308 (402)
T TIGR00897       231 RIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDK-LGWMNTVRWFGGVGCGIFTLALYYI  308 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHHHH
Confidence            34556677777 66667774 589999999888888888889999999999999 59988764 3333333332222211


Q ss_pred             cCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh
Q 048319           83 TPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP  162 (348)
Q Consensus        83 ~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in  162 (348)
                        |...               ..+....++...+.+++.++.-| ..+...+.    .|++   +   ...+.+++...+
T Consensus       309 --~~~~---------------~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~----~~~~---~---g~~~g~~~~~~~  360 (402)
T TIGR00897       309 --PQHF---------------GHSFAVALIIAIALGIFLAGYVP-LAAVFPTL----APKH---K---GAAMSVLNLSAG  360 (402)
T ss_pred             --HHcc---------------CCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhh----Ccch---h---HHHHHHHHHHHH
Confidence              1000               01234445556666777766544 23333332    2322   3   566777777766


Q ss_pred             ---hhcchhhccc-c--cchhhHHHHHHHHHHHHHHHH
Q 048319          163 ---VAAIIPISYI-K--PWNLRFGVSAICTVIATLLFL  194 (348)
Q Consensus       163 ---~~~~~~~~yi-~--g~~~~F~i~~~~~~i~~~vf~  194 (348)
                         .+++.+.+++ +  ||...|.+.+++.+++.++..
T Consensus       361 lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~  398 (402)
T TIGR00897       361 LSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTA  398 (402)
T ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence               5666666544 3  888888887777666655443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.02  E-value=2e-05  Score=78.34  Aligned_cols=173  Identities=13%  Similarity=0.080  Sum_probs=115.7

Q ss_pred             HHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhh---hccchHHHH-HHHHHHhhhhhhhhc
Q 048319            7 ADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDT---IISKYWMLV-FSSLAYSVGIGLLTM   81 (348)
Q Consensus         7 ~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~---~lGr~~ti~-~~~~i~~~G~~ll~~   81 (348)
                      .-.+.+.-. ..+..|+++.+|.+...++.+..+....--+..++-|+++||   .+||||-.+ +|.+...++.+++..
T Consensus        12 ~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~   91 (428)
T PF13347_consen   12 GYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFS   91 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhc
Confidence            334444545 677888999999999999999999999999999999999994   479877655 677888888887774


Q ss_pred             ccCC-ccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHH
Q 048319           82 STPP-VLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFM  160 (348)
Q Consensus        82 s~~p-~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~  160 (348)
                      . .| ...              ...+...+++...+..++...+.-+..++++|..++.+  ||.+.   .+.=+.+...
T Consensus        92 ~-~p~~~~--------------~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~--~R~~l---~~~~~~~~~~  151 (428)
T PF13347_consen   92 P-PPAGLS--------------FTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD--ERTRL---SSWRMIFSMI  151 (428)
T ss_pred             c-ccchhh--------------hhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHh--hhhhH---HHHHHHHHHH
Confidence            3 11 110              01223344566666788888899998999998876543  43323   3333333333


Q ss_pred             Hh----hhcchhhcccc------cchhhHHHHHHHHHHHHHHHHhcCcc
Q 048319          161 VP----VAAIIPISYIK------PWNLRFGVSAICTVIATLLFLSGTCT  199 (348)
Q Consensus       161 in----~~~~~~~~yi~------g~~~~F~i~~~~~~i~~~vf~~g~~~  199 (348)
                      .+    .+.+......+      ||.+.+.+.++..+++.++.....|.
T Consensus       152 g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  152 GSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             HHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence            33    22222233332      58888888777777777776666655

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.01  E-value=6.9e-05  Score=74.92  Aligned_cols=113  Identities=13%  Similarity=0.053  Sum_probs=86.7

Q ss_pred             HHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccC
Q 048319            6 WADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTP   84 (348)
Q Consensus         6 ~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~   84 (348)
                      ++--+++++. ..+..|+++.+|++..+++...........+..+++|++.|| +||++.+.++..+..+|..++.....
T Consensus       265 ~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~g~~~~~~~~~~~~~~~~  343 (485)
T TIGR00711       265 SLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDK-IDPRKLVTIGLILYAVGFYWRAFTFT  343 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcHHHHHHHHHHHHHHHHHHhccCC
Confidence            3445667777 778889999999999999999988888888999999999999 69999999999999888887763211


Q ss_pred             CccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhh
Q 048319           85 PVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLE  137 (348)
Q Consensus        85 p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~  137 (348)
                      |.                  .....++..+.+.++|.|..-+.......+.++
T Consensus       344 ~~------------------~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~  378 (485)
T TIGR00711       344 PD------------------TPFLAIALPQFIRGFGMGCFFMPLTTIALSGLP  378 (485)
T ss_pred             CC------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            11                  123445566778888988877666666655543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.00  E-value=4e-05  Score=81.70  Aligned_cols=124  Identities=17%  Similarity=0.068  Sum_probs=87.2

Q ss_pred             HHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHH
Q 048319           39 IFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLA  118 (348)
Q Consensus        39 ~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~lia  118 (348)
                      .......+..+++|+++|| +||++++.++.++..++.+++....                      +...+++...+.+
T Consensus       603 l~~l~~i~G~il~g~L~Dr-~GRr~~l~~~~~lsai~~ll~~~~~----------------------s~~~ll~~~~l~g  659 (742)
T TIGR01299       603 LGTLAVLPGNIVSALLMDK-IGRLRMLAGSMVLSCISCFFLSFGN----------------------SESAMIALLCLFG  659 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHc----------------------cHHHHHHHHHHHH
Confidence            3335566778999999999 5999999999999888877766531                      1123334444556


Q ss_pred             HhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhcccc--cchhhHHHHHHHHHHHHHHH
Q 048319          119 FASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYIK--PWNLRFGVSAICTVIATLLF  193 (348)
Q Consensus       119 iG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi~--g~~~~F~i~~~~~~i~~~vf  193 (348)
                      ++.++.-+...++.+|.|+.+.      |   .+.+.+.+...+   ++++.+.+++.  +....|.+.+++++++.++.
T Consensus       660 ~~~~~~~~~~~a~~aEl~Pt~~------R---gta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~  730 (742)
T TIGR01299       660 GLSIAAWNALDVLTVELYPSDK------R---ATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLA  730 (742)
T ss_pred             HHHHHHHHHHHHHHHHHcCHHH------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            6666666778888998887542      4   678999988888   67776666543  66677888777777665544


Q ss_pred             H
Q 048319          194 L  194 (348)
Q Consensus       194 ~  194 (348)
                      +
T Consensus       731 ~  731 (742)
T TIGR01299       731 L  731 (742)
T ss_pred             H
Confidence            4

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=97.99  E-value=0.00016  Score=70.49  Aligned_cols=151  Identities=9%  Similarity=-0.064  Sum_probs=95.1

Q ss_pred             HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCC
Q 048319           16 WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCS   95 (348)
Q Consensus        16 ~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~   95 (348)
                      ..+..|+.+.+|++..+++.....+.....+..+++|+++|| +|+++.+.++..+..++.+++.... +          
T Consensus       220 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r-~~~~~~~~~~~~~~~i~~~~~~~~~-~----------  287 (382)
T PRK10091        220 SYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGR-YSPLRIAAVTDFIIVLALLMLFFFG-G----------  287 (382)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccc-cCchhHHHHHHHHHHHHHHHHHHHH-h----------
Confidence            445567777789999999999999999999999999999999 5999999999988888876554321 0          


Q ss_pred             CCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHhhhcchhhccc-c-
Q 048319           96 EYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVPVAAIIPISYI-K-  173 (348)
Q Consensus        96 ~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in~~~~~~~~yi-~-  173 (348)
                                ......+...+..+|.++.-+.......+...   ++|.. .   ....+-.|...+.+++.+.+++ + 
T Consensus       288 ----------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~-~---~~~~~~~~~~g~~~Gp~~~G~l~~~  350 (382)
T PRK10091        288 ----------MKTASLIFAFICCAGLFALSAPLQILLLQNAK---GGELL-G---AAGGQIAFNLGSAIGAYCGGMMLTL  350 (382)
T ss_pred             ----------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCC---cchHH-H---HHHHHHHHHHHHHHHHHHhHHHHHc
Confidence                      11233334444555555544433333333221   11111 1   1122333333336677666653 2 


Q ss_pred             --cchhhHHHHHHHHHHHHHHHHh
Q 048319          174 --PWNLRFGVSAICTVIATLLFLS  195 (348)
Q Consensus       174 --g~~~~F~i~~~~~~i~~~vf~~  195 (348)
                        ||+..|.+.++..+++...+..
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~  374 (382)
T PRK10091        351 GLAYNYVALPAALLSFAAMSSLLL  374 (382)
T ss_pred             ccCcchHHHHHHHHHHHHHHHHHH
Confidence              7999999887777666554443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=97.95  E-value=0.00022  Score=69.66  Aligned_cols=160  Identities=11%  Similarity=-0.067  Sum_probs=96.9

Q ss_pred             HHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHH-HHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhccc
Q 048319            6 WADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSG-LVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMST   83 (348)
Q Consensus         6 ~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~-~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~   83 (348)
                      ++-..+..+. .....|+.+ +|++..+.+.+...... ...+..+++|+++|| +|++|.+.++..+..++..+.....
T Consensus       218 ~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~~~~~~~~~~~~~  295 (390)
T TIGR02718       218 LLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRR-AGLWRTFILGVGLAGSLALLWFAQA  295 (390)
T ss_pred             HHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555566666 666677865 79999999998887765 444557899999999 5999999988776644333322211


Q ss_pred             CCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh-
Q 048319           84 PPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP-  162 (348)
Q Consensus        84 ~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in-  162 (348)
                      .....+                .....+....+.+++.|..-+...+...+..++++     .+   .+.+.++....+ 
T Consensus       296 ~~~~~~----------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~---g~~~~~~~~~~~l  351 (390)
T TIGR02718       296 AFWLAP----------------GIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGD-----QA---GTDVTAVQSTRDL  351 (390)
T ss_pred             HcccCC----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-----ch---HHHHHHHHHHHHH
Confidence            111011                11222222333344455555666666665543311     12   445555555555 


Q ss_pred             --hhcchhhcccc---cchhhHHHHHHHHHHHHH
Q 048319          163 --VAAIIPISYIK---PWNLRFGVSAICTVIATL  191 (348)
Q Consensus       163 --~~~~~~~~yi~---g~~~~F~i~~~~~~i~~~  191 (348)
                        .+++.+.+++.   ||...|.+.+++.+++.+
T Consensus       352 g~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       352 GELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence              66776666664   898999988776666544

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=97.95  E-value=0.00026  Score=69.94  Aligned_cols=159  Identities=20%  Similarity=0.234  Sum_probs=98.9

Q ss_pred             HHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhc-cchHHH-HHHHHHHhhhhhhhhcccCCc
Q 048319           10 LAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTII-SKYWML-VFSSLAYSVGIGLLTMSTPPV   86 (348)
Q Consensus        10 ~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~l-Gr~~ti-~~~~~i~~~G~~ll~~s~~p~   86 (348)
                      +.=||+ .=..+|+.+..|++..+|+..++.|.......+++.||++|+++ |||.-. +++.+..++..+++..+    
T Consensus       266 ivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~----  341 (448)
T COG2271         266 VVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLA----  341 (448)
T ss_pred             HHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcC----
Confidence            334566 55567888899999999999999999999999999999999999 776544 34445555555555554    


Q ss_pred             cCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHH-HHHHhhhc
Q 048319           87 LAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLL-LFMVPVAA  165 (348)
Q Consensus        87 ~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~-y~~in~~~  165 (348)
                        |              ..+..+..+.+..+++-  .+-|-  -+.+-+--|-.|++.....  ..+-++| |...+.++
T Consensus       342 --~--------------~~~~~l~~~~l~~iGf~--IyGPq--mLiGl~a~e~~pK~AaGtA--~Gf~Glf~Yl~Ga~~a  399 (448)
T COG2271         342 --P--------------NGSYLLDAILLFIIGFL--IYGPQ--MLIGLAAAEFVPKKAAGTA--TGFVGLFAYLIGAALA  399 (448)
T ss_pred             --C--------------CccHHHHHHHHHHHHHH--HhhHH--HHHHHHHhccccHhhccch--hchhhhHHHHhhHHhc
Confidence              1              11233333334333333  33333  2334344444454332221  3334444 55566777


Q ss_pred             chhhccc-c--cchhhHHHHHHHHHHHHHHHH
Q 048319          166 IIPISYI-K--PWNLRFGVSAICTVIATLLFL  194 (348)
Q Consensus       166 ~~~~~yi-~--g~~~~F~i~~~~~~i~~~vf~  194 (348)
                      ....+++ +  ||..+|.+-.++.+++.+.++
T Consensus       400 ~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~  431 (448)
T COG2271         400 GLPLGYIADTWGWDGGFIVLSIAALLAILLLL  431 (448)
T ss_pred             CCcceeeEecCCCcchHHHHHHHHHHHHHHHH
Confidence            7778877 4  999999876655555554443

>PRK10504 putative transporter; Provisional

Probab=97.94  E-value=0.00028  Score=70.69  Aligned_cols=137  Identities=13%  Similarity=0.057  Sum_probs=91.8

Q ss_pred             HHHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhccc
Q 048319            5 LWADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMST   83 (348)
Q Consensus         5 e~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~   83 (348)
                      .++-.+++... .....|++..+|.+...++.+.............+.|.++||+ ||++++.++..+..++..++....
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~  348 (471)
T PRK10504        270 SFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLALVSLLFMLVA  348 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHhcc
Confidence            34555565444 4556677777999999999888777777777778899999995 999999999988888766665431


Q ss_pred             CCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh-
Q 048319           84 PPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP-  162 (348)
Q Consensus        84 ~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in-  162 (348)
                      .                   ......+.+.+.+.++|.|..-+....+..+..++++      +   ...+.++.+..+ 
T Consensus       349 ~-------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~---g~~~~~~~~~~~~  400 (471)
T PRK10504        349 L-------------------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------A---SSGNSLLSMIMQL  400 (471)
T ss_pred             c-------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------c---cchHHHHHHHHHH
Confidence            1                   0112333445666777887777777777776555332      3   556777777665 


Q ss_pred             --hhcchhhc
Q 048319          163 --VAAIIPIS  170 (348)
Q Consensus       163 --~~~~~~~~  170 (348)
                        .+++.+.+
T Consensus       401 g~~ig~~i~g  410 (471)
T PRK10504        401 SMSIGVTIAG  410 (471)
T ss_pred             HHHHHHHHHH
Confidence              44444433

>TIGR00889 2A0110 nucleoside transporter

Probab=97.94  E-value=0.00055  Score=68.06  Aligned_cols=66  Identities=9%  Similarity=0.072  Sum_probs=56.7

Q ss_pred             HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhc
Q 048319           16 WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTM   81 (348)
Q Consensus        16 ~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~   81 (348)
                      +.|..|+++++|++..+.+.+.+.+.....+.++++|.++||+-|||+++.++.++..++..+...
T Consensus        23 ~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~   88 (418)
T TIGR00889        23 VTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQ   88 (418)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            778899999999999999999999999999999999999999645688888888777666655544

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=97.93  E-value=0.00013  Score=73.87  Aligned_cols=49  Identities=22%  Similarity=0.320  Sum_probs=41.5

Q ss_pred             HhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccch
Q 048319           13 FVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKY   62 (348)
Q Consensus        13 yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~   62 (348)
                      +++ ..+..|+.+.+|++..+++.+...+.....+..+++|+++||+ |||
T Consensus       269 ~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r  318 (476)
T PLN00028        269 LTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARR  318 (476)
T ss_pred             HHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHh
Confidence            344 4456788888999999999999999999999999999999994 765

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=97.91  E-value=0.0003  Score=68.72  Aligned_cols=157  Identities=14%  Similarity=-0.005  Sum_probs=107.2

Q ss_pred             HHHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhccc
Q 048319            5 LWADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMST   83 (348)
Q Consensus         5 e~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~   83 (348)
                      -++-..++.+. ..+..|+++ +|.+....+...........+...+.+.+.|| +|+++++.++.+...++.+++....
T Consensus       214 ~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r-~g~~~~l~~~~~~~~~~~~~~~~~~  291 (382)
T TIGR00902       214 VCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQN-CSARDLLLISAIACVGRWAIIGAIE  291 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhh-CCHHHHHHHHHHHHHHHHHHHHhHh
Confidence            34445667777 777888875 89999999988887666666677888899999 4999999999999999988775431


Q ss_pred             CCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh-
Q 048319           84 PPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP-  162 (348)
Q Consensus        84 ~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in-  162 (348)
                                            +.+.++..-.+-++..|.+-+....+..++ ++++   +..-   +..|+...+.+- 
T Consensus       292 ----------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~---~~~~---q~~~~~~~~g~g~  342 (382)
T TIGR00902       292 ----------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE---IAKL---QALYNALAMGGLI  342 (382)
T ss_pred             ----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh---HHHH---HHHHHHHHHHHHH
Confidence                                  235566666788888888888887777764 3322   1112   344443333333 


Q ss_pred             hhcchhhcccc---cchhhHHHHHHHHHHHHHHH
Q 048319          163 VAAIIPISYIK---PWNLRFGVSAICTVIATLLF  193 (348)
Q Consensus       163 ~~~~~~~~yi~---g~~~~F~i~~~~~~i~~~vf  193 (348)
                      .+++.+.+++.   |+ ..|.+.++..++++++.
T Consensus       343 ~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~  375 (382)
T TIGR00902       343 AIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFLI  375 (382)
T ss_pred             HHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence            55666666654   65 55666666666665443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=97.91  E-value=0.00035  Score=67.43  Aligned_cols=55  Identities=13%  Similarity=0.028  Sum_probs=47.0

Q ss_pred             HHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhh
Q 048319           20 EYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVG   75 (348)
Q Consensus        20 ~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G   75 (348)
                      .|+.+.+|++..+++.+.........+..+++|+++|| +||+|++.++..+..+.
T Consensus       219 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~  273 (377)
T PRK11102        219 FVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRR-VGALNMLRFGLWIQFIM  273 (377)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHH
Confidence            35566789999999999999988999999999999999 59999999988765443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=97.90  E-value=0.00039  Score=67.83  Aligned_cols=138  Identities=11%  Similarity=-0.015  Sum_probs=89.8

Q ss_pred             HHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccch----HHHHHHHHHHhhhhhhhhcccCCccCCCCC
Q 048319           17 TMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKY----WMLVFSSLAYSVGIGLLTMSTPPVLAGFVG   92 (348)
Q Consensus        17 ~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~----~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~   92 (348)
                      .+..|++ ++|.+..+.+.+.+.+.....+..+++|.++||+ ||+    +.+.++..+..+  . +...          
T Consensus        26 ~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~--~-~~~~----------   90 (382)
T PRK11128         26 FWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLFAV--A-FWFG----------   90 (382)
T ss_pred             hHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHHHH--H-HHHh----------
Confidence            4456774 5899999999999999999999999999999994 983    333333322221  1 1111          


Q ss_pred             CCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhh
Q 048319           93 TCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPI  169 (348)
Q Consensus        93 ~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~  169 (348)
                                 ..+.+.+++...+.+++.+...|...+...|. .++       +   .+.+.+.....+   .+++.+.
T Consensus        91 -----------~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~-~~~-------~---~~a~~~~~~~~~lg~~igp~lg  148 (382)
T PRK11128         91 -----------AHSFWLLFVAIGLFNLFFSPLVPLTDALANTW-QKQ-------I---GLDYGKVRLWGSIAFVIGSALT  148 (382)
T ss_pred             -----------cccHHHHHHHHHHHHHHHcccccHHHHHHHHH-Hhh-------c---cCCcchHHHHHHHHHHHHHHHH
Confidence                       01346666777778899999999887776654 221       1   222333334444   6666666


Q ss_pred             cccc---cchhhHHHHHHHHHHHHH
Q 048319          170 SYIK---PWNLRFGVSAICTVIATL  191 (348)
Q Consensus       170 ~yi~---g~~~~F~i~~~~~~i~~~  191 (348)
                      .++-   ||+..|.+.++..++..+
T Consensus       149 g~l~~~~g~~~~f~~~~~~~~~~~~  173 (382)
T PRK11128        149 GKLVSWFGEQAILWILTAGVASMLL  173 (382)
T ss_pred             HHHHHHcChhHHHHHHHHHHHHHHH
Confidence            6553   999999887765555443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=97.89  E-value=0.00025  Score=70.64  Aligned_cols=159  Identities=14%  Similarity=0.074  Sum_probs=88.3

Q ss_pred             HHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHH---hhhhhhhhcc
Q 048319            7 ADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAY---SVGIGLLTMS   82 (348)
Q Consensus         7 ~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~---~~G~~ll~~s   82 (348)
                      +--..+|++ ..+..|+++..|++..+++.....+.....+..+++|+++||+ |+.+....+..+.   .++.+++...
T Consensus       262 ~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (438)
T TIGR00712       262 FVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTLVTIAVIVYWMN  340 (438)
T ss_pred             HHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHHHHHHHHHHHhc
Confidence            334555777 7677888888899999999988888888899999999999995 5433222333222   2222222221


Q ss_pred             cCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh
Q 048319           83 TPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP  162 (348)
Q Consensus        83 ~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in  162 (348)
                        +.                  .+....+..+..++++..+.-+.......|.++++.      +   .....+++...+
T Consensus       341 --~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~---g~~~g~~~~~~~  391 (438)
T TIGR00712       341 --PA------------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------A---GTAAGFTGLFGY  391 (438)
T ss_pred             --CC------------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------e---eeehhhhchHHH
Confidence              10                  011222333333333322211122234444444321      2   334444444433


Q ss_pred             ----hhcchhhcccc---cchhhHHHHHHHHHHHHHHHHh
Q 048319          163 ----VAAIIPISYIK---PWNLRFGVSAICTVIATLLFLS  195 (348)
Q Consensus       163 ----~~~~~~~~yi~---g~~~~F~i~~~~~~i~~~vf~~  195 (348)
                          .+++.+.+++-   ||..+|.+.++..+++.+.++.
T Consensus       392 ~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  431 (438)
T TIGR00712       392 LGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  431 (438)
T ss_pred             hhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence                45566666553   8999998877666666655543

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=97.88  E-value=0.00021  Score=67.82  Aligned_cols=126  Identities=10%  Similarity=0.055  Sum_probs=91.4

Q ss_pred             HHHHHHHHhH-HHHHHH-hhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhccc
Q 048319            6 WADCLAQFVM-WTMMEY-LTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMST   83 (348)
Q Consensus         6 ~~Er~a~yg~-~~L~~Y-l~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~   83 (348)
                      +.-.+.++++ .++..| +++.+|.+..+.+.+...+.....+..++++++.|+ .||++.+..+..+..++..++....
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  298 (365)
T TIGR00900       220 LLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRY-FKRMALMTGAIFVIGLAILVVGLTP  298 (365)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHhhc
Confidence            3344555555 344444 445689999999999888888888889999999999 5999999988777777666555431


Q ss_pred             CCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh
Q 048319           84 PPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP  162 (348)
Q Consensus        84 ~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in  162 (348)
                                          . +...+++...+.+++.|...|...++..|..++++      +   .+.+..++...+
T Consensus       299 --------------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~---g~~~~~~~~~~~  347 (365)
T TIGR00900       299 --------------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------L---GRVFGAQFSLSH  347 (365)
T ss_pred             --------------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------H---HHHHHHHHHHHH
Confidence                                1 24566777888999999998988888888776432      3   556666666666

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=97.88  E-value=0.00049  Score=69.62  Aligned_cols=119  Identities=13%  Similarity=-0.001  Sum_probs=86.6

Q ss_pred             HHHHHHhhh-hhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCC
Q 048319           16 WTMMEYLTE-VWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTC   94 (348)
Q Consensus        16 ~~L~~Yl~~-~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c   94 (348)
                      +.+..++.+ ++|++.++.+.+.+.+....-+.-++.|+++||+ |.||.+.++.++..++.+++..+.- ..       
T Consensus        54 ~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~i~~~~~~~a~~-~~-------  124 (462)
T PRK15034         54 SAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAILIIPCVWLGIAVQ-NP-------  124 (462)
T ss_pred             HHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHHc-cc-------
Confidence            556666655 7999999999999988887778889999999995 9999999999998888887765311 00       


Q ss_pred             CCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh
Q 048319           95 SEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP  162 (348)
Q Consensus        95 ~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in  162 (348)
                               ..+...+++.-.+.++| |+.-+.....+.+.|++++      +   .....++-...|
T Consensus       125 ---------~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------r---G~A~Gi~~g~G~  173 (462)
T PRK15034        125 ---------NTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------Q---GSALGINGGLGN  173 (462)
T ss_pred             ---------CCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------h---HHHHHHHHHHHh
Confidence                     01356777777788888 5555777777887776432      2   445666544444

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=97.84  E-value=0.00021  Score=68.09  Aligned_cols=142  Identities=16%  Similarity=0.090  Sum_probs=83.2

Q ss_pred             HHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHH--HHHhhhhhhhhcccCC
Q 048319            9 CLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSS--LAYSVGIGLLTMSTPP   85 (348)
Q Consensus         9 r~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~--~i~~~G~~ll~~s~~p   85 (348)
                      -+.++++ ..+..|+.+.+|++..+++.....+.....+..+++|+++||..+|++......  ....++..++...  +
T Consensus       229 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  306 (379)
T TIGR00881       229 YVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLN--P  306 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcC--c
Confidence            3444556 666778888899999999999999888889999999999998655555433222  2222222222211  1


Q ss_pred             ccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---
Q 048319           86 VLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---  162 (348)
Q Consensus        86 ~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---  162 (348)
                                        ..+.....+.+.+.++..++.-+.......|.++++.      +   ...+.++....+   
T Consensus       307 ------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~---g~~~g~~~~~~~~g~  359 (379)
T TIGR00881       307 ------------------AANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------A---GTAAGFVGFFAYLGG  359 (379)
T ss_pred             ------------------chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------h---HHHHHHHHHhhhhhh
Confidence                              0112233334444554444444555556666654322      3   556666655555   


Q ss_pred             hhcchhhcccc---cchhhH
Q 048319          163 VAAIIPISYIK---PWNLRF  179 (348)
Q Consensus       163 ~~~~~~~~yi~---g~~~~F  179 (348)
                      .+++.+.+++.   ||+..|
T Consensus       360 ~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       360 ILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             hhhhhhHHHHHHhhcccccC
Confidence            56666665554   665543

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=97.84  E-value=0.00027  Score=70.00  Aligned_cols=149  Identities=10%  Similarity=-0.048  Sum_probs=88.5

Q ss_pred             HHHHHHHHHhH-HHHHHHhhh-hhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHH-HHHHHHHHhhhhhhhhc
Q 048319            5 LWADCLAQFVM-WTMMEYLTE-VWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWM-LVFSSLAYSVGIGLLTM   81 (348)
Q Consensus         5 e~~Er~a~yg~-~~L~~Yl~~-~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~t-i~~~~~i~~~G~~ll~~   81 (348)
                      -++.-..++++ ..+..|+++ ..|++..+++...........+..+++|+++||+ ||++. +....++..+++.+...
T Consensus       251 ~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~~~~~~~~~~  329 (412)
T TIGR02332       251 YFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFAAAGWLLASA  329 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHHHHHHHHHHh
Confidence            45556678888 888888876 3577888888888888888888999999999995 76664 44444555555433221


Q ss_pred             ccCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHH
Q 048319           82 STPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMV  161 (348)
Q Consensus        82 s~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~i  161 (348)
                      .  +                    +....+.++.+.++|....-+.......    +..|.|  ++   ...+.+.+...
T Consensus       330 ~--~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~~--~~---~~a~g~~~~~~  378 (412)
T TIGR02332       330 T--D--------------------HNLIQLLGIIMASMGSFSAMAIFWTTPD----QSISLQ--AR---AIAIAVINATG  378 (412)
T ss_pred             c--C--------------------CHHHHHHHHHHHHHHhhhhhhHHHhhcc----cccchH--HH---HHHHHHHHHhh
Confidence            1  0                    0111222333333333222111111111    222222  24   56788888877


Q ss_pred             h---hhcchhhcccc----cchhhHHHHHHH
Q 048319          162 P---VAAIIPISYIK----PWNLRFGVSAIC  185 (348)
Q Consensus       162 n---~~~~~~~~yi~----g~~~~F~i~~~~  185 (348)
                      |   .+++.+.+.+.    +|..+|.+.++.
T Consensus       379 ~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       379 NIGSALSPFLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             hhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence            7   67777776654    599998876654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=97.83  E-value=0.00076  Score=65.47  Aligned_cols=143  Identities=13%  Similarity=0.032  Sum_probs=96.5

Q ss_pred             hhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCCcccc
Q 048319           24 EVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECIV  103 (348)
Q Consensus        24 ~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~~c~~  103 (348)
                      +..|+++.+-+.+...-.+.+.++..+.|.++|+ +||||..+..+++|.+..+.--.                      
T Consensus        62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~-~Grk~~cl~~cily~~scl~k~~----------------------  118 (354)
T PF05631_consen   62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADR-YGRKKACLLFCILYSLSCLTKHS----------------------  118 (354)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHhc----------------------
Confidence            4578998888888777777777777888899999 59999999999999998753221                      


Q ss_pred             cchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccc-hhhhhhhhhhhhHHHHHHHHHh----hhcchhhcccc-----
Q 048319          104 KGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAI-NEHISLSLIQREFFKLLLFMVP----VAAIIPISYIK-----  173 (348)
Q Consensus       104 ~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~-~~e~~~~~~~~~~f~~~y~~in----~~~~~~~~yi~-----  173 (348)
                       .+...+++|-++-++++...-..--+-...+.++.+ |+|  ..   ...|..--+..|    .+++.+..++.     
T Consensus       119 -~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~--~L---~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~  192 (354)
T PF05631_consen  119 -SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQE--WL---SDTFSLATFFGNGVVAIGAGVVANVLADWFGF  192 (354)
T ss_pred             -cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH--HH---HHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCC
Confidence             236788999999999988776555544443333332 222  12   455654443455    33333333322     


Q ss_pred             cchhhHHHHHHHHHHHHHHHHh
Q 048319          174 PWNLRFGVSAICTVIATLLFLS  195 (348)
Q Consensus       174 g~~~~F~i~~~~~~i~~~vf~~  195 (348)
                      |-...|..+.++.+++.++...
T Consensus       193 g~vaPF~~a~~~l~~~~~~I~~  214 (354)
T PF05631_consen  193 GPVAPFDAAIVLLAVAAVLILK  214 (354)
T ss_pred             CCcchHHHHHHHHHHHHHHHHh
Confidence            4577899988888887765544

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=97.82  E-value=0.00066  Score=66.31  Aligned_cols=139  Identities=8%  Similarity=0.019  Sum_probs=88.1

Q ss_pred             HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHH----HHHHHHhhhhhhhhcccCCccCCCC
Q 048319           16 WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLV----FSSLAYSVGIGLLTMSTPPVLAGFV   91 (348)
Q Consensus        16 ~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~----~~~~i~~~G~~ll~~s~~p~~~~~~   91 (348)
                      ..+..|+ +++|.+..+.+.+.+.+.....+.+++.|.++||+ ||++...    ++..+..+   ++...         
T Consensus        25 p~l~~~l-~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~~~---~~~~~---------   90 (382)
T TIGR00902        25 PFFPAWL-KGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIFAA---AFSAG---------   90 (382)
T ss_pred             HHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHH---HHHHh---------
Confidence            3344555 46899999999999999999999999999999995 8854332    22222221   11111         


Q ss_pred             CCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchh
Q 048319           92 GTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIP  168 (348)
Q Consensus        92 ~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~  168 (348)
                                  ..+.+.+++...+.+.+.+..-|...++.. .++    +|   +   ...+.+.....+   .+++.+
T Consensus        91 ------------~~~~~~l~~~~~l~~~~~~~~~p~~~al~~-~~~----~~---~---~~~~g~~~~~~slG~~~g~~l  147 (382)
T TIGR00902        91 ------------AHNAWLLFIAIGLFALFFSAGMPIGDALAN-TWQ----KQ---F---GLDYGKVRLIGSAAFIIGSAL  147 (382)
T ss_pred             ------------hhhHHHHHHHHHHHHHHHccchhHHHHHHH-HHH----HH---c---CCCccHHHHHHHHHHHHHHHH
Confidence                        012456667776777787777777666643 221    11   2   344666666666   556655


Q ss_pred             hcccc---cchhhHHHHHHHHHHHHH
Q 048319          169 ISYIK---PWNLRFGVSAICTVIATL  191 (348)
Q Consensus       169 ~~yi~---g~~~~F~i~~~~~~i~~~  191 (348)
                      .+++-   ||+..|.+.++..++..+
T Consensus       148 ~g~l~~~~g~~~~f~~~~~~~~~~~~  173 (382)
T TIGR00902       148 FGGLIGMFDEQNILAILTAGLAFMLI  173 (382)
T ss_pred             HHHHHHHcChhHHHHHHHHHHHHHHH
Confidence            55543   999999887655444333

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.80  E-value=0.00015  Score=73.43  Aligned_cols=142  Identities=12%  Similarity=0.103  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCCcccccchhHHHHHH
Q 048319           34 AGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECIVKGHKILFYAA  113 (348)
Q Consensus        34 ~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~  113 (348)
                      +.+++.|.....+...++|++||++ |||++++++.++..++.++..++...                   ...-++.+|
T Consensus        63 S~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~-------------------~~~e~li~G  122 (485)
T KOG0569|consen   63 SLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSA-------------------PSFEMLILG  122 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHh-------------------hhHHHHHHH
Confidence            3456777777888888999999995 99999999999999988887776431                   124578899


Q ss_pred             HHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh-hhc-chhhccc-c---cchhhHHHHHHHHH
Q 048319          114 LGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP-VAA-IIPISYI-K---PWNLRFGVSAICTV  187 (348)
Q Consensus       114 L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in-~~~-~~~~~yi-~---g~~~~F~i~~~~~~  187 (348)
                      -.+.++..|.....++-+..    |..|++.|..   -+.++-.-..+- +++ ....+.+ .   .|++.++++.+..+
T Consensus       123 R~i~Gl~~gl~~~~~pmyl~----E~sP~~~RG~---~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~  195 (485)
T KOG0569|consen  123 RLIVGLACGLSTGLVPMYLT----EISPKNLRGA---LGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPAL  195 (485)
T ss_pred             HHHHHHHhHHHHHHHHHHHh----hcChhhhccH---HHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHH
Confidence            99999999999888888887    6777765555   444443333222 555 3333333 2   79999999888666


Q ss_pred             HHHH--HHHhcCccccc
Q 048319          188 IATL--LFLSGTCTYEN  202 (348)
Q Consensus       188 i~~~--vf~~g~~~y~~  202 (348)
                      +.++  .++-.+|+|.-
T Consensus       196 ~~l~~l~~~PESPk~Ll  212 (485)
T KOG0569|consen  196 LQLALLPFLPESPKYLL  212 (485)
T ss_pred             HHHHHHhcCCCCcchHH
Confidence            5544  44556677643

>TIGR00896 CynX cyanate transporter

Probab=97.79  E-value=0.00036  Score=67.06  Aligned_cols=108  Identities=9%  Similarity=0.003  Sum_probs=80.5

Q ss_pred             HHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccC
Q 048319            6 WADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTP   84 (348)
Q Consensus         6 ~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~   84 (348)
                      .+.-+.++++ ..+..|+++ .|++..+++.+...+.....+..+++|+++||+=+|++++.++..+..+|.+++.....
T Consensus       207 ~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (355)
T TIGR00896       207 GLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPM  285 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhh
Confidence            3445667777 777778865 79999999999999999999999999999999646777888888888888776654310


Q ss_pred             CccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhh
Q 048319           85 PVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLE  137 (348)
Q Consensus        85 p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~  137 (348)
                                           +....  ...+.++|.|..-|...+...+..+
T Consensus       286 ---------------------~~~~~--~~~l~g~~~g~~~~~~~~~~~~~~~  315 (355)
T TIGR00896       286 ---------------------HGLWA--WALVLGLGQGGAFPLALTLIGLRSR  315 (355)
T ss_pred             ---------------------hHHHH--HHHHHHHhhhhHhHHHHHHHHHhcc
Confidence                                 11111  3456788999988887777665443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00895 2A0115 benzoate transport

Probab=97.77  E-value=0.00033  Score=67.34  Aligned_cols=130  Identities=10%  Similarity=-0.056  Sum_probs=87.1

Q ss_pred             HHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCC
Q 048319            7 ADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPP   85 (348)
Q Consensus         7 ~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p   85 (348)
                      +.-+.++++ ..+. |+.+.+|++..+++.+...+.....+..+++|+++|| +||++.+........++..+....  .
T Consensus       261 ~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~  336 (398)
T TIGR00895       261 MLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADR-LGPRVTALLLLLGAVFAVLVGSTL--F  336 (398)
T ss_pred             HHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHh--h
Confidence            334455555 4333 6667789999999999999999999999999999999 598855554444443333332211  0


Q ss_pred             ccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---
Q 048319           86 VLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---  162 (348)
Q Consensus        86 ~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---  162 (348)
                                          +...+++...+.+++.|+.-+...+..+|.++++.      +   ...+.+++...+   
T Consensus       337 --------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~---g~~~g~~~~~~~~g~  387 (398)
T TIGR00895       337 --------------------SPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------R---ATGVGWAIGIGRLGA  387 (398)
T ss_pred             --------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------H---HHHHHHHHHHHHHHH
Confidence                                13445666778888888888989999998876432      3   556777666555   


Q ss_pred             hhcchhh
Q 048319          163 VAAIIPI  169 (348)
Q Consensus       163 ~~~~~~~  169 (348)
                      .+++.+.
T Consensus       388 ~~g~~~~  394 (398)
T TIGR00895       388 IIGPILA  394 (398)
T ss_pred             HHHHHhH
Confidence            4444443

>PRK12307 putative sialic acid transporter; Provisional

Probab=97.77  E-value=0.00052  Score=67.55  Aligned_cols=127  Identities=11%  Similarity=-0.010  Sum_probs=79.0

Q ss_pred             HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCC
Q 048319           16 WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCS   95 (348)
Q Consensus        16 ~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~   95 (348)
                      ..+..|+.+ .|++...++.+...+.....+..+++|+++|| +||++++..+.++..++..++...  +.         
T Consensus       252 ~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~--~~---------  318 (426)
T PRK12307        252 GLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADR-IGLKKTFSIGLLMSFLFIFPLFRI--PQ---------  318 (426)
T ss_pred             HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHH--cc---------
Confidence            445666665 69999998888888888888889999999999 599999999988776665544321  10         


Q ss_pred             CCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhccc
Q 048319           96 EYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYI  172 (348)
Q Consensus        96 ~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi  172 (348)
                               .....+...++.+..+..+.-+..+.+..|.++++.      +   .+.....+...+   .+++.+.+++
T Consensus       319 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~---g~~~g~~~~~~~~~~~~gp~~~g~l  380 (426)
T PRK12307        319 ---------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------R---GLGTGLIYNLAATSGTFNSMAATWL  380 (426)
T ss_pred             ---------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------H---hhhhhHHHHHHhHHHHHHHHHHHHH
Confidence                     011111112222223333444555666776665432      3   445555555555   6666666665


Q ss_pred             c
Q 048319          173 K  173 (348)
Q Consensus       173 ~  173 (348)
                      .
T Consensus       381 ~  381 (426)
T PRK12307        381 G  381 (426)
T ss_pred             H
Confidence            4

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=97.76  E-value=0.00053  Score=67.59  Aligned_cols=71  Identities=17%  Similarity=0.129  Sum_probs=62.5

Q ss_pred             HHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcc
Q 048319           11 AQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMS   82 (348)
Q Consensus        11 a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s   82 (348)
                      +|.|+ .-|-.|+++++|.+..+|+.+...+.....+.-.+||+||||+ |..|.+.+......++..++...
T Consensus       233 ~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~~~~~~l~~~  304 (417)
T COG2223         233 GFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMALAAALLSLF  304 (417)
T ss_pred             HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHHHHHHHHHcc
Confidence            56778 7889999999999999999999999999999999999999995 88888888878878777777664

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=97.76  E-value=0.00041  Score=77.06  Aligned_cols=119  Identities=10%  Similarity=0.020  Sum_probs=88.6

Q ss_pred             HHhH-HHHHHHhhhhhCCchH-HHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCC
Q 048319           12 QFVM-WTMMEYLTEVWKISVV-HAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAG   89 (348)
Q Consensus        12 ~yg~-~~L~~Yl~~~l~~~~~-~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~   89 (348)
                      ++.. ..+..|+.+.+|++.. .++.+...+.....+..++.|+++|+ .|+++.+.++.++..++.+++....      
T Consensus       248 ~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~------  320 (1146)
T PRK08633        248 SQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGR-HIELGLVPLGALGLALSLFLLPTAP------  320 (1146)
T ss_pred             HHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceEccchhHHHHHHHHHHHHHHHhh------
Confidence            3344 5567788888999998 88888888888888889999999999 5999999888888887777665431      


Q ss_pred             CCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh
Q 048319           90 FVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP  162 (348)
Q Consensus        90 ~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in  162 (348)
                                      +...+++++++++++.|..-+...++..+..+++.      +   .+.+.++.+..+
T Consensus       321 ----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------r---g~~~~~~~~~~~  368 (1146)
T PRK08633        321 ----------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------L---GKVLAANNFLQN  368 (1146)
T ss_pred             ----------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------h---hhhhHHHHHHHH
Confidence                            23456677788889999888888888876665432      3   455555555555

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=97.74  E-value=0.00058  Score=67.41  Aligned_cols=160  Identities=17%  Similarity=0.049  Sum_probs=105.5

Q ss_pred             HHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccC
Q 048319           10 LAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLA   88 (348)
Q Consensus        10 ~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~   88 (348)
                      -+.|.. +.+-.|+++.-|++....+.+...|.....+..++||.++||  +.++++.....+..+.+..+...+.    
T Consensus       225 ~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~~~l~l~~~~~----  298 (394)
T COG2814         225 TGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLALALLALTFTGA----  298 (394)
T ss_pred             cchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHHHHHHHHHhcc----
Confidence            345666 677778888999999999999999999999999999999999  9999999998888888777766521    


Q ss_pred             CCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhc
Q 048319           89 GFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAA  165 (348)
Q Consensus        89 ~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~  165 (348)
                                       +.....+.+.+.+++.+..-+....-.++    ..|+.   +   +..-+++--+.|   .+|
T Consensus       299 -----------------~~~~~~~~~~~wg~a~~~~~~~~~~~~a~----~~p~~---~---~~a~sl~~aa~nlgia~G  351 (394)
T COG2814         299 -----------------SPALALALLFLWGFAFSPALQGLQTRLAR----LAPDA---A---DLAGSLNVAAFNLGIALG  351 (394)
T ss_pred             -----------------hHHHHHHHHHHHHHHhhhhhhHHHHHhcc----cCCCc---h---HHHHHHHHHHHHHHHHHH
Confidence                             22333444444444444322222222222    11211   2   333334444555   333


Q ss_pred             chhhccc-c--cchhhHHHHHHHHHHHHHHHHhcCccccc
Q 048319          166 IIPISYI-K--PWNLRFGVSAICTVIATLLFLSGTCTYEN  202 (348)
Q Consensus       166 ~~~~~yi-~--g~~~~F~i~~~~~~i~~~vf~~g~~~y~~  202 (348)
                      ..+-+.+ +  ||.....+.++..+++.++.+...+++++
T Consensus       352 A~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~~~~  391 (394)
T COG2814         352 AALGGLVLDALGYAATGWVGAALLLLALLLALLSARKDRR  391 (394)
T ss_pred             HHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            3222222 2  88888899999999998888776665543

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.72  E-value=0.00014  Score=73.65  Aligned_cols=140  Identities=15%  Similarity=0.104  Sum_probs=102.7

Q ss_pred             hhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCCccccc
Q 048319           25 VWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECIVK  104 (348)
Q Consensus        25 ~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~~c~~~  104 (348)
                      .++++..+-+.+.+.+.-...++.+++|+++||+ |-||.+.++.++..++.++..+++.                    
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~--------------------  125 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAAS--------------------  125 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence            5788999999999999999999999999999995 9999999999999999998877643                    


Q ss_pred             chhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHH---hhhcchhhccc---c-cchh
Q 048319          105 GHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMV---PVAAIIPISYI---K-PWNL  177 (348)
Q Consensus       105 ~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~i---n~~~~~~~~yi---~-g~~~  177 (348)
                      .+...+.+..++.+++.|..-|++..+.+.=.+   ++||      .++....+-..   ++++..+.+++   + ||+.
T Consensus       126 ~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P---~~Er------s~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~s  196 (466)
T KOG2532|consen  126 IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAP---PNER------STFIAILTAGSQLGTIITMPVSGLLCESSLGWPS  196 (466)
T ss_pred             hcchhhHHHHHHhHHHHhHHHhhhhceeeeECC---HHHH------HHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCch
Confidence            112356777889999999999999887774333   3443      33444444333   23333333443   2 9999


Q ss_pred             hHHHHHHHHHHHHHHHH
Q 048319          178 RFGVSAICTVIATLLFL  194 (348)
Q Consensus       178 ~F~i~~~~~~i~~~vf~  194 (348)
                      .|-+-++.-++-.+++.
T Consensus       197 ifY~~g~~g~i~~~~w~  213 (466)
T KOG2532|consen  197 IFYVFGIVGLIWFILWF  213 (466)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99987766555444443

>PRK10429 melibiose:sodium symporter; Provisional

Probab=97.70  E-value=0.00038  Score=70.30  Aligned_cols=165  Identities=15%  Similarity=0.131  Sum_probs=95.0

Q ss_pred             HHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCc
Q 048319            8 DCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPV   86 (348)
Q Consensus         8 Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~   86 (348)
                      -.++++.. +....|++..++ +....+.+.........+..++.++++|| +||++++.++..+..++.+.+...... 
T Consensus       243 ~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~gkk~~~~~~~~~~~~~~~~~~~~~~~-  319 (473)
T PRK10429        243 YNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKS-LSRRILWAGASIFPVLSCGVLLLMGLA-  319 (473)
T ss_pred             HHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence            33444433 333333333344 33334444444445556666778999999 599999999988877776665432110 


Q ss_pred             cCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchh-hhhhhhhhhhHHHHHHHHHh---
Q 048319           87 LAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINE-HISLSLIQREFFKLLLFMVP---  162 (348)
Q Consensus        87 ~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~-e~~~~~~~~~~f~~~y~~in---  162 (348)
                       .+               .....+++...+.++|.|..-+...++.+|..|.++-+ .+|+.   ..+|..+-+...   
T Consensus       320 -~~---------------~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~---G~~~s~~~~~~K~~~  380 (473)
T PRK10429        320 -AP---------------HNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCE---SIAYSVQTMVVKGGS  380 (473)
T ss_pred             -Cc---------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccch---hHHHHHHHHHHHHHH
Confidence             01               12345566667788899988899999999998865321 11222   335666555544   


Q ss_pred             hhcchhhccc-----------c------cchhhH-HHHHHHHHHHHHHHH
Q 048319          163 VAAIIPISYI-----------K------PWNLRF-GVSAICTVIATLLFL  194 (348)
Q Consensus       163 ~~~~~~~~yi-----------~------g~~~~F-~i~~~~~~i~~~vf~  194 (348)
                      .+++.+.+++           |      +-++.| .+|+++++++.+++.
T Consensus       381 al~~~i~g~~l~~~Gy~~~~~q~~~~~~~i~~~~~~~p~~~~~~~~~~~~  430 (473)
T PRK10429        381 AFAAFFIGVVLGLIGYVPNVEQSAQTLLGMQFIMIGLPTLFFMITLVLYF  430 (473)
T ss_pred             HHHHHHHHHHHHHcCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333322           1      222333 368888777776554

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=97.68  E-value=0.00085  Score=65.93  Aligned_cols=145  Identities=11%  Similarity=0.037  Sum_probs=83.6

Q ss_pred             HHhhhhhCCchHHHHHHHHHHHH-HHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCC
Q 048319           20 EYLTEVWKISVVHAAGIVNIFSG-LVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYK   98 (348)
Q Consensus        20 ~Yl~~~l~~~~~~A~~i~~~~~~-~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~   98 (348)
                      .|+.+.+|++..+.+.+...... ...+..+++|+++|| +||+|.+.++..+..+..+.+.+.+..   +         
T Consensus       234 ~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r-~g~~~~l~~~~~~~~l~~l~~~~~~~~---~---------  300 (402)
T PRK11902        234 TFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVR-LGLYRSLMLFGVLQAVSNLGYWVLAVT---P---------  300 (402)
T ss_pred             HHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHhc---C---------
Confidence            45666789999888887766544 466778899999999 599999888777766654443322110   0         


Q ss_pred             CcccccchhHHHHHHHH----HHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHhhhcchhhcccc-
Q 048319           99 PECIVKGHKILFYAALG----LLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVPVAAIIPISYIK-  173 (348)
Q Consensus        99 ~~c~~~~~~~~~~~~L~----liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in~~~~~~~~yi~-  173 (348)
                            .+...++++..    ..+++.+..-+....+..+.++.++          ...++..+.....++..+.+++. 
T Consensus       301 ------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~~~G~l~~  364 (402)
T PRK11902        301 ------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ----------YALLSALASVGRVYVGPTSGYLVE  364 (402)
T ss_pred             ------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  01233333332    3444555555555555554443221          22233333212232333444443 


Q ss_pred             --cchhhHHHHHHHHHHHHHHH
Q 048319          174 --PWNLRFGVSAICTVIATLLF  193 (348)
Q Consensus       174 --g~~~~F~i~~~~~~i~~~vf  193 (348)
                        ||...|.+.+++.+++.++.
T Consensus       365 ~~G~~~~f~~~~~~~~~~~~~~  386 (402)
T PRK11902        365 AYGWPGFYLMTVVIALPGLALL  386 (402)
T ss_pred             HhChHHHHHHHHHHHHHHHHHH
Confidence              99999999888777776554

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=97.68  E-value=0.0014  Score=65.66  Aligned_cols=56  Identities=9%  Similarity=0.103  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhc
Q 048319            4 LLWADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTII   59 (348)
Q Consensus         4 ~e~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~l   59 (348)
                      ..++--++++++ ..+-.|+.+.+|++..+++...........+..+++|+++|+..
T Consensus       269 ~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~  325 (465)
T TIGR00894       269 AIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLK  325 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556677777 77888999999999999999888888888999999999999953

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=97.65  E-value=0.00034  Score=66.14  Aligned_cols=124  Identities=18%  Similarity=0.111  Sum_probs=95.4

Q ss_pred             HHHHhH-HHHHHHhhhhhCCc-hHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCcc
Q 048319           10 LAQFVM-WTMMEYLTEVWKIS-VVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVL   87 (348)
Q Consensus        10 ~a~yg~-~~L~~Yl~~~l~~~-~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~   87 (348)
                      +.+++. ..+..|+.+.+|++ ..+++.+.........+..+++|+++|| +|+++.+.+......++.+.+.+....  
T Consensus       220 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--  296 (352)
T PF07690_consen  220 FVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDR-FGRRRRLLIAILLLILGALGLLLLPFS--  296 (352)
T ss_dssp             HHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHCCSHHH--
T ss_pred             HHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence            456667 77778888999999 8899888888888888889999999999 699999888888888877776664321  


Q ss_pred             CCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh
Q 048319           88 AGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP  162 (348)
Q Consensus        88 ~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in  162 (348)
                                       .+....+..+.+++++.|...|...++..|.++++.      +   .+.+..+....|
T Consensus       297 -----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~---g~~~g~~~~~~~  345 (352)
T PF07690_consen  297 -----------------SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------R---GTAFGLFNSIGS  345 (352)
T ss_dssp             -----------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------H---HHHHHHHHHHHH
T ss_pred             -----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------H---HHHHHHHHHHHH
Confidence                             123556667888999999999999999998776432      3   455666555544

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK09669 putative symporter YagG; Provisional

Probab=97.64  E-value=0.0009  Score=66.78  Aligned_cols=103  Identities=14%  Similarity=0.110  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCCcccccchhHHHHHHHH
Q 048319           36 IVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALG  115 (348)
Q Consensus        36 i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~  115 (348)
                      +.........+..+++++++|| +||++++.++.++..++...+.+.  |   +               .+...+++...
T Consensus       269 ~~~~~~i~~ii~~~~~~~l~~r-~gk~~~~~~~~~~~~~~~~~~~~~--~---~---------------~~~~~~~~~~~  327 (444)
T PRK09669        269 FLVTGMIAGLFGALLSERLLGK-FDRVRAFKWTIVAFVILSALIFFI--P---P---------------SNVWLIFALNI  327 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHh--C---c---------------chHHHHHHHHH
Confidence            3333334445666788899999 599999999887766544333321  1   1               12455677778


Q ss_pred             HHHHhcccCCcchhHHHHHhhhccchhh-hhhhhhhhhHHHHHHHHHh
Q 048319          116 LLAFASSSCSVESTEFAEEQLEIAINEH-ISLSLIQREFFKLLLFMVP  162 (348)
Q Consensus       116 liaiG~G~~k~~v~~~~adq~~~~~~~e-~~~~~~~~~~f~~~y~~in  162 (348)
                      +.++|.|..-|...++.+|..|.++-+. +|+.   ..+|..+.++.+
T Consensus       328 i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~---g~~~s~~~~~~k  372 (444)
T PRK09669        328 LFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLD---GLVFSTNLFAIK  372 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcc---hHHHHHHHHHHH
Confidence            8999999999999999999988654321 1222   445666666666

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=97.54  E-value=0.0028  Score=62.39  Aligned_cols=147  Identities=11%  Similarity=0.028  Sum_probs=90.9

Q ss_pred             HHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccC
Q 048319           10 LAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLA   88 (348)
Q Consensus        10 ~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~   88 (348)
                      .++++. ..+..++.+.+|++..+++.+...+.....+..++.+++.|| .+ ++.+..+..+..+...++....     
T Consensus       230 ~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r-~~-~~~l~~~~~~~~~~~~~l~~~~-----  302 (394)
T PRK10213        230 AGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKR-SV-KLALAGAPLVLAVSALVLTLWG-----  302 (394)
T ss_pred             HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhc-cc-hhHHHHHHHHHHHHHHHHHHHh-----
Confidence            445555 444344446789999999998888888888999999999999 34 4444444444333323332211     


Q ss_pred             CCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhc
Q 048319           89 GFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAA  165 (348)
Q Consensus        89 ~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~  165 (348)
                                      .+.+.++++..+.++|.+..-+..+++..+..+++.          .+..+.++...+   .+|
T Consensus       303 ----------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~lg~~~G  356 (394)
T PRK10213        303 ----------------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQA----------EKAGSIQVAVIQLANTCG  356 (394)
T ss_pred             ----------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcccH----------HHHHHHHHHHHHHHHHHH
Confidence                            013455566777888998888888888876654321          222333333334   566


Q ss_pred             chhhcccc---cchhhHHHHHHHHHHH
Q 048319          166 IIPISYIK---PWNLRFGVSAICTVIA  189 (348)
Q Consensus       166 ~~~~~yi~---g~~~~F~i~~~~~~i~  189 (348)
                      +.+.+++-   |+...|...++..++.
T Consensus       357 ~~l~G~l~~~~g~~~~~~~~~~~~~~~  383 (394)
T PRK10213        357 AAIGGYALDNIGLTSPLMLSGTLMLLT  383 (394)
T ss_pred             HHHHHHHHhccChhhHHHHHHHHHHHH
Confidence            66666553   7777777766554433

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=97.50  E-value=0.0016  Score=62.40  Aligned_cols=109  Identities=13%  Similarity=0.065  Sum_probs=80.9

Q ss_pred             HHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccC
Q 048319           10 LAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLA   88 (348)
Q Consensus        10 ~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~   88 (348)
                      ..++++ ..+..|+++.+|+++.+++.+...+.....+..+++|+++|| +||++.+..+.....++..++.+...+   
T Consensus       239 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~~~---  314 (366)
T TIGR00886       239 GSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDR-LGGARKLLMSFLGVAMGAFLVVLGLVS---  314 (366)
T ss_pred             HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHh-hccchhHHHHHHHHHHHHHHHHhcCCC---
Confidence            345667 777889988999999999988888888888899999999999 599998888887777777666543110   


Q ss_pred             CCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhh
Q 048319           89 GFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLE  137 (348)
Q Consensus        89 ~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~  137 (348)
                                     ..+...++..+.+..++.|...+...+..++..+
T Consensus       315 ---------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  348 (366)
T TIGR00886       315 ---------------PLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR  348 (366)
T ss_pred             ---------------cchHHHHHHHHHHHHHHhccccchhhhcchhhch
Confidence                           0024455566666667777766777777777664

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=97.48  E-value=0.00049  Score=68.05  Aligned_cols=147  Identities=14%  Similarity=0.090  Sum_probs=114.1

Q ss_pred             HHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCC
Q 048319           20 EYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKP   99 (348)
Q Consensus        20 ~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~   99 (348)
                      .++.++.++|.++-+.+.+.+..+--+.-.+.|.++|| -+.|+-+-+|.++..+-.+++..+.                
T Consensus        53 p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr-~npr~fm~~gLilsai~nil~Gfs~----------------  115 (448)
T COG2271          53 PALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDR-SNPRYFMAFGLILSAIVNILFGFSP----------------  115 (448)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhccc-CCCceeehHHHHHHHHHHHHHhhhh----------------
Confidence            34445788999999999999999888999999999999 4999999999999888888777652                


Q ss_pred             cccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhh--cccc-
Q 048319          100 ECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPI--SYIK-  173 (348)
Q Consensus       100 ~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~--~yi~-  173 (348)
                            +...+.+-+.+.+.-+|.=-|...-.++.=|+.++      |   .+..+.+-.+-|   .+.+.++  .++- 
T Consensus       116 ------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------R---G~~~siWn~shNiGGal~~~~~~la~~~~  180 (448)
T COG2271         116 ------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------R---GTWWSIWNTSHNIGGALAPLVALLAFFAF  180 (448)
T ss_pred             ------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------c---CceEEEehhhhhcccchHHHHHHHHHHHh
Confidence                  35667777788999999988999888888887543      3   556677778888   4444444  4443 


Q ss_pred             --cchhhHHHHHHHH-HHHHHHHHhcCc
Q 048319          174 --PWNLRFGVSAICT-VIATLLFLSGTC  198 (348)
Q Consensus       174 --g~~~~F~i~~~~~-~i~~~vf~~g~~  198 (348)
                        +|+.+|.+|+++. +++++.+..++.
T Consensus       181 ~~~w~~~f~~pgiiaiival~~~~~~rd  208 (448)
T COG2271         181 HGGWRAAFYFPGIIAIIVALILLFLLRD  208 (448)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence              9999999998554 566666666554

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=97.46  E-value=0.0033  Score=61.33  Aligned_cols=145  Identities=12%  Similarity=0.007  Sum_probs=91.3

Q ss_pred             HHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccC
Q 048319           10 LAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLA   88 (348)
Q Consensus        10 ~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~   88 (348)
                      +++.++ ..+..|+. ++|++..+.+...........+..++.|++.|| +|+++.+.++.++..++.+++....     
T Consensus       219 ~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~l~~~~~~~~~~~~~~~~~~-----  291 (382)
T PRK11128        219 GSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRR-WSARDLLLLSAICGVVRWGLMGSTT-----  291 (382)
T ss_pred             HHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHhhh-----
Confidence            444455 66667775 489999888888876666666777889999999 5999999999998888877665431     


Q ss_pred             CCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh----hh
Q 048319           89 GFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP----VA  164 (348)
Q Consensus        89 ~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in----~~  164 (348)
                                       +...+++...+.+++.|..-+.......++    ++++   +   .+....+....+    .+
T Consensus       292 -----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~----~~~~---~---~~~~~~~~~~~~~~g~~i  344 (382)
T PRK11128        292 -----------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR----PGSE---V---IRLQALYSALAMGGSIAI  344 (382)
T ss_pred             -----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CHhh---h---HHHHHHHHHHHHHHHHHH
Confidence                             234556667777888777655555544432    2222   2   334554433333    45


Q ss_pred             cchhhcccc---cchhhHHHHHHHHHHH
Q 048319          165 AIIPISYIK---PWNLRFGVSAICTVIA  189 (348)
Q Consensus       165 ~~~~~~yi~---g~~~~F~i~~~~~~i~  189 (348)
                      ++.+.+++.   |+. .|.+.++..+++
T Consensus       345 g~~i~G~l~~~~g~~-~~~~~~~~~~~~  371 (382)
T PRK11128        345 MTVLSGFLYQHLGAG-VFWVMALVALPA  371 (382)
T ss_pred             HHHHHHHHHHhccHH-HHHHHHHHHHHH
Confidence            566666654   553 444444443333

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.46  E-value=0.0015  Score=61.87  Aligned_cols=140  Identities=12%  Similarity=0.077  Sum_probs=96.0

Q ss_pred             HHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHH-HHHHHhhhhhhhhcccCCccCCCCCCCCCCC
Q 048319           20 EYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVF-SSLAYSVGIGLLTMSTPPVLAGFVGTCSEYK   98 (348)
Q Consensus        20 ~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~-~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~   98 (348)
                      +++++.+|+|.+.|+++.+..-+.+-.+..+-|.+.|++ ||.-+.+. +++...+||..++.+-.   .|         
T Consensus       289 ~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv~~a~~~tl~~H~~l~Ft~l---sP---------  355 (459)
T KOG4686|consen  289 MFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWVASACILTLLGHSGLFFTFL---SP---------  355 (459)
T ss_pred             HHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhHHHHHHHHHHHhhhHHhhhc---cH---------
Confidence            678899999999999999998888888888899999996 98766555 55667778988887632   22         


Q ss_pred             CcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhcccc--
Q 048319           99 PECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYIK--  173 (348)
Q Consensus        99 ~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi~--  173 (348)
                                  |+++.++++.....-...-|.++...+|++      .   ...|..-|-..|   .+.+++++.+.  
T Consensus       356 ------------y~~m~~lGLsysllAcslWP~va~~vpE~q------L---GTaygf~qsIqNLgla~i~Iiag~i~d~  414 (459)
T KOG4686|consen  356 ------------YTSMTFLGLSYSLLACSLWPCVASLVPEEQ------L---GTAYGFIQSIQNLGLAFIPIIAGFIADG  414 (459)
T ss_pred             ------------HHHHHHHhhhHHHHHHHHhhhhhhhCCHHH------h---cchHHHHHHHHhhhhhHHhhhhheeecC
Confidence                        355555555544443335556665555543      4   677888888888   45556666664  


Q ss_pred             --c--chhhHHHHHHHHHHHHHHH
Q 048319          174 --P--WNLRFGVSAICTVIATLLF  193 (348)
Q Consensus       174 --g--~~~~F~i~~~~~~i~~~vf  193 (348)
                        |  |--+|.+....|++..+..
T Consensus       415 ~g~y~~le~ffl~~~~~aL~svgi  438 (459)
T KOG4686|consen  415 DGSYDNLEAFFLIIGLMALTSVGI  438 (459)
T ss_pred             CCchhhHHHHHHHHHHHHHHHHHH
Confidence              2  4446666666555444333

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=97.44  E-value=0.0016  Score=72.59  Aligned_cols=167  Identities=15%  Similarity=-0.057  Sum_probs=99.2

Q ss_pred             HHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccC
Q 048319            6 WADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTP   84 (348)
Q Consensus         6 ~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~   84 (348)
                      ++-.+.++++ ..+..|+.+.+|.+...++.+...+.....+..++.|+++|++ ++.+.+.++.++..++.+.+.+...
T Consensus       235 ~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~  313 (1140)
T PRK06814        235 SWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGLFGLDLAFASS  313 (1140)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHHHHHHHHhccc
Confidence            3344556667 7788899999999999999999999999999999999999985 5555555555555544443333200


Q ss_pred             CccCCCCCCCCCCCCccc-ccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh-
Q 048319           85 PVLAGFVGTCSEYKPECI-VKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP-  162 (348)
Q Consensus        85 p~~~~~~~~c~~~~~~c~-~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in-  162 (348)
                      ....+  +.... --.+- ...+.+.+++++.++++|.|..-+...++..+..+++.      +   .+.+..+.+..+ 
T Consensus       314 ~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~---G~v~g~~~~~~~~  381 (1140)
T PRK06814        314 SVPAE--PAQLK-SILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------R---ARVIAANNVLNAA  381 (1140)
T ss_pred             ccccc--ccccc-chhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------c---eeeeHHHHHHHHH
Confidence            00000  00000 00000 00123556677888899999888888888887666543      2   334444434333 


Q ss_pred             --hhcchhhcccc----cchhhHHHHHHH
Q 048319          163 --VAAIIPISYIK----PWNLRFGVSAIC  185 (348)
Q Consensus       163 --~~~~~~~~yi~----g~~~~F~i~~~~  185 (348)
                        .++..+.+++.    ++...|.+.+++
T Consensus       382 ~~~ig~~~~g~l~~~~~~~~~~~~~~~~~  410 (1140)
T PRK06814        382 FMVAGTIILALLQALGFSIPWIILFIALA  410 (1140)
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence              44444444442    555555544443

>PRK11043 putative transporter; Provisional

Probab=97.40  E-value=0.0066  Score=59.34  Aligned_cols=108  Identities=10%  Similarity=-0.068  Sum_probs=69.6

Q ss_pred             HHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCC
Q 048319           11 AQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAG   89 (348)
Q Consensus        11 a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~   89 (348)
                      .+++. ..+..|+. ..|++..+++...........+..++++++.|| +|+++++....+...++.+.+.+....  .+
T Consensus       218 ~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  293 (401)
T PRK11043        218 AFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQK-WGGEQLLPWLLVLFAVSVIAIWLASLL--SH  293 (401)
T ss_pred             HHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHh--cc
Confidence            33444 43444554 579999988877766666667777888899999 599998777666665554443332110  00


Q ss_pred             CCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhh
Q 048319           90 FVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLE  137 (348)
Q Consensus        90 ~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~  137 (348)
                                     .......++..+.+++.|..-|...+...++.+
T Consensus       294 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (401)
T PRK11043        294 ---------------PSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP  326 (401)
T ss_pred             ---------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc
Confidence                           123445556677888888888888777666654

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=97.39  E-value=0.0041  Score=60.58  Aligned_cols=166  Identities=11%  Similarity=0.126  Sum_probs=114.4

Q ss_pred             HHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCc
Q 048319            8 DCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPV   86 (348)
Q Consensus         8 Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~   86 (348)
                      ..+.||.+ +=|-.++.+ -|+|.++|+..++..+.....+.+++=++++|.--+|+..+..+..+.+|.+-+.+.  |.
T Consensus       220 qS~~~Y~~~~WLP~ili~-~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~--P~  296 (395)
T COG2807         220 QSLLYYIVIGWLPAILID-RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLA--PG  296 (395)
T ss_pred             hHHHHHHHHHHHHHHHHH-cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHh--hh
Confidence            45667777 666666664 699999999999999999999999999999998899999999999999998877753  21


Q ss_pred             cCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHhhhcc
Q 048319           87 LAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVPVAAI  166 (348)
Q Consensus        87 ~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in~~~~  166 (348)
                                         +.+.+.  ..++++|.|+.-|-.-.+..+.-+  |+++..+.   +.+-.=.=..+-.+++
T Consensus       297 -------------------~~~~lw--~~llG~G~G~~F~laL~li~~rs~--~a~~Aa~L---SgmaQg~GYllAa~GP  350 (395)
T COG2807         297 -------------------QLPILW--ALLLGLGQGGAFPLALTLILLRSS--DAAIAAAL---SGMAQGVGYLLAAFGP  350 (395)
T ss_pred             -------------------hHHHHH--HHHHhCccchHHHHHHHHHHhhcC--ChHHHHHH---HHHhhhhhHHHHhhhh
Confidence                               222222  578999999999988888887655  34433322   2221111011225677


Q ss_pred             hhhcccc----cchhhHHH-HHHHHHHHHHHHHhcCccccc
Q 048319          167 IPISYIK----PWNLRFGV-SAICTVIATLLFLSGTCTYEN  202 (348)
Q Consensus       167 ~~~~yi~----g~~~~F~i-~~~~~~i~~~vf~~g~~~y~~  202 (348)
                      .+++++.    +|...... ..+..++...-+..++++|.+
T Consensus       351 ~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~a~r~~~i~  391 (395)
T COG2807         351 WLFGFLHDATGSWSAPLVLLALATLLMLIFGLRAGRNRYIR  391 (395)
T ss_pred             hhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhhcchhHHhH
Confidence            7777775    88876553 333333344445667666653

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=97.39  E-value=0.008  Score=60.89  Aligned_cols=109  Identities=11%  Similarity=0.011  Sum_probs=67.4

Q ss_pred             HHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCC
Q 048319           11 AQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAG   89 (348)
Q Consensus        11 a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~   89 (348)
                      +|.|. ..+-.|+++.+  +...+............+...+||++||| +|++|+++++.++..++...+.+. .|.-  
T Consensus       267 ~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADR-iG~~~vl~~~~i~~~i~~~~~~l~-lp~~--  340 (462)
T PRK15034        267 SFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDK-FGGVRVTLINFIFMAIFSALLFLT-LPGT--  340 (462)
T ss_pred             HHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHh-cCchHHHHHHHHHHHHHHHHHHHH-hccc--
Confidence            44445 45556666644  33333222333345566777899999998 599999999998777766443332 1210  


Q ss_pred             CCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhc
Q 048319           90 FVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEI  138 (348)
Q Consensus        90 ~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~  138 (348)
                                   +..+...+.++++.+.+..|.-+..+.-++.+-|++
T Consensus       341 -------------~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~  376 (462)
T PRK15034        341 -------------GSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQ  376 (462)
T ss_pred             -------------cccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhh
Confidence                         112456666666666677777777777777777764

>PRK10054 putative transporter; Provisional

Probab=97.38  E-value=0.0027  Score=62.55  Aligned_cols=159  Identities=14%  Similarity=0.165  Sum_probs=96.9

Q ss_pred             HHHHHHhhh--hhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCC
Q 048319           16 WTMMEYLTE--VWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGT   93 (348)
Q Consensus        16 ~~L~~Yl~~--~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~   93 (348)
                      ..+..|+..  +.+.+....+.+...+.........+.|.+.||+ |+++.+.++..+..+|..++.....         
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~---------  296 (395)
T PRK10054        227 SCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCFVIGLVGFIFSGN---------  296 (395)
T ss_pred             hhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHcch---------
Confidence            444555543  2445555556666666555555556778899994 9999999999888888877654311         


Q ss_pred             CCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHH--HHhhhcchhhcc
Q 048319           94 CSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLF--MVPVAAIIPISY  171 (348)
Q Consensus        94 c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~--~in~~~~~~~~y  171 (348)
                                  ..+.+.++..+.++|.+..-|+..+.+.+.-+++      .+   .++|+-.-.  ....+++.+.++
T Consensus       297 ------------~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~------~~---~~~~~~~~~~~~G~~~Gp~~~G~  355 (395)
T PRK10054        297 ------------SLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPG------MK---ASYFSAQSLGWLGAAINPLVSGV  355 (395)
T ss_pred             ------------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcc------cc---eehHhHHHHHHHHHHHHHHHHHH
Confidence                        2344556677888888888888777777655432      13   444442211  112666666666


Q ss_pred             cc---cchhhHHHHHHHHHHHHHHHHhcCcccccCCCCCCc
Q 048319          172 IK---PWNLRFGVSAICTVIATLLFLSGTCTYENKEPEGSP  209 (348)
Q Consensus       172 i~---g~~~~F~i~~~~~~i~~~vf~~g~~~y~~~~p~gs~  209 (348)
                      +-   |....|.+-++...++.+.-..+.+    .||-|.|
T Consensus       356 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  392 (395)
T PRK10054        356 ILTTLPPWSLFVILALAIVAAWLLMLKGMR----ARPWGQP  392 (395)
T ss_pred             HHHHcChhhHHHHHHHHHHHHHHHHHhccc----cCcccCC
Confidence            54   8888887765555555444443322    4555554

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=97.37  E-value=0.0022  Score=62.67  Aligned_cols=143  Identities=13%  Similarity=0.123  Sum_probs=81.3

Q ss_pred             HHHHhhhhh---CCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCC
Q 048319           18 MMEYLTEVW---KISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTC   94 (348)
Q Consensus        18 L~~Yl~~~l---~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c   94 (348)
                      +..|+.+.+   +.+....+.+.+.......+..++.|++.|| +||++.+.++.++..++..++....           
T Consensus       238 ~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r-~g~~~~l~~~~~l~~l~~~~~~~~~-----------  305 (396)
T TIGR00882       238 FANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINR-IGAKNALLIAGTIMSVRIIGSSFAT-----------  305 (396)
T ss_pred             HHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhHHHHHHHHHHHHHHHHhcC-----------
Confidence            345665544   4445555555555555556666888999999 5999999999999888887655431           


Q ss_pred             CCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHH-HHHHHh---hhcchhhc
Q 048319           95 SEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKL-LLFMVP---VAAIIPIS  170 (348)
Q Consensus        95 ~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~-~y~~in---~~~~~~~~  170 (348)
                                 +...+++...+.+++.+...........++.++      +.+   ...+.. +..+.+   .+++.+.+
T Consensus       306 -----------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~~---at~~~~~~~~~~~lg~~~~~~l~G  365 (396)
T TIGR00882       306 -----------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDV------RLS---ATIYLIGFQFAKQLAMIFLSTLAG  365 (396)
T ss_pred             -----------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc------ceE---EEeehHHHHHHHHHHHHHHHHhHH
Confidence                       123344444555555322222122222222221      112   222333 223333   66666667


Q ss_pred             ccc---cchhhHHHHHHHHHHHHHH
Q 048319          171 YIK---PWNLRFGVSAICTVIATLL  192 (348)
Q Consensus       171 yi~---g~~~~F~i~~~~~~i~~~v  192 (348)
                      ++-   ||+..|.+.++..++..++
T Consensus       366 ~l~~~~G~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       366 NMYDSIGFQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHH
Confidence            663   8999999877777665543

>PRK11462 putative transporter; Provisional

Probab=97.37  E-value=0.0042  Score=62.67  Aligned_cols=114  Identities=12%  Similarity=0.046  Sum_probs=69.0

Q ss_pred             HHHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhccc
Q 048319            5 LWADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMST   83 (348)
Q Consensus         5 e~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~   83 (348)
                      .++.-++.... +....|.+..+|.+. ..+.+...+...+.+..+++++++|| +|+++.+..+..+..++.+++.+. 
T Consensus       237 ~~~~~~~~~~~~~~~~y~~~y~~g~~~-~~~~~l~~~~i~~iig~~l~~~l~~r-~gkk~~~~~~~~~~~~~~~~~~~~-  313 (460)
T PRK11462        237 TIFNILAVCVRGGAMMYYVTWILGTPE-VFVAFLTTYCVGNLIGSALAKPLTDW-KCKVTIFWWTNALLAVISLAMFFV-  313 (460)
T ss_pred             HHHHHHHHHHHHhHhhhhhhhhcCChH-HHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHh-
Confidence            44555555555 555555655565543 33345556666667778899999999 599888776555444433333221 


Q ss_pred             CCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccc
Q 048319           84 PPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAI  140 (348)
Q Consensus        84 ~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~  140 (348)
                       |.                  .....+++...+.+++.|..-+...++.+|..|.++
T Consensus       314 -~~------------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e  351 (460)
T PRK11462        314 -PM------------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGE  351 (460)
T ss_pred             -ch------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhH
Confidence             10                  112234445556677777777777889999888654

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=97.37  E-value=0.0021  Score=65.27  Aligned_cols=70  Identities=16%  Similarity=0.032  Sum_probs=43.6

Q ss_pred             HHHHhH-HHHHHHhhhhhCCchHHHHHH------------HHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhh
Q 048319           10 LAQFVM-WTMMEYLTEVWKISVVHAAGI------------VNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGI   76 (348)
Q Consensus        10 ~a~yg~-~~L~~Yl~~~l~~~~~~A~~i------------~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~   76 (348)
                      +.|||+ ..+..++ +.+|++..+++..            ............+++++++|| +|||++++++..+..++.
T Consensus       302 ~~~y~~~~~~p~i~-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr-~gRR~~l~~~~~~~~~~~  379 (502)
T TIGR00887       302 IAFYGVNLNQKVIL-SAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDI-IGRKPIQLMGFFILTVLF  379 (502)
T ss_pred             HHHHccccccHHHH-HHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcchhHHHHHHHHHHHHH
Confidence            456666 4444445 3578765433211            111112233355778999999 599999999988888777


Q ss_pred             hhhhc
Q 048319           77 GLLTM   81 (348)
Q Consensus        77 ~ll~~   81 (348)
                      .++.+
T Consensus       380 ~~l~~  384 (502)
T TIGR00887       380 FVLGF  384 (502)
T ss_pred             HHHHH
Confidence            66664

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=97.35  E-value=0.0039  Score=63.93  Aligned_cols=159  Identities=11%  Similarity=0.033  Sum_probs=107.7

Q ss_pred             HHHHHHHHhH----HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhc
Q 048319            6 WADCLAQFVM----WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTM   81 (348)
Q Consensus         6 ~~Er~a~yg~----~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~   81 (348)
                      ++-.+..+|+    ..+...+.+.++.+..+++.+.+...+..++...+.+.+.||+ |.|.+.+.|.+++.+|+++-..
T Consensus        52 fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~~g~~lssF  130 (509)
T KOG2504|consen   52 FLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAALGLLLSSF  130 (509)
T ss_pred             HHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHHHHHHHHHH
Confidence            3445556666    3355667778999999999999999999999999999999995 9999999999999999988665


Q ss_pred             ccCCccCCCCCCCCCCCCcccccchhHHHHHHH-HHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHH
Q 048319           82 STPPVLAGFVGTCSEYKPECIVKGHKILFYAAL-GLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFM  160 (348)
Q Consensus        82 s~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L-~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~  160 (348)
                      ++                      +.+.+++.. ++.++|.|.........++.=|+.+           +..-+=.=++
T Consensus       131 ~~----------------------~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk-----------R~lA~Gia~~  177 (509)
T KOG2504|consen  131 AT----------------------SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK-----------RALATGIAVS  177 (509)
T ss_pred             Hh----------------------hHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-----------HHHHHhhhhc
Confidence            42                      245566655 3578888887777767777444421           2222221222


Q ss_pred             Hhhhcchhhccc-----c--cchhhHHHHHHHHHHHHHHHHhcCc
Q 048319          161 VPVAAIIPISYI-----K--PWNLRFGVSAICTVIATLLFLSGTC  198 (348)
Q Consensus       161 in~~~~~~~~yi-----~--g~~~~F~i~~~~~~i~~~vf~~g~~  198 (348)
                      .--++..+.+.+     +  ||+.++.+=+..++-.++.-..-+|
T Consensus       178 GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp  222 (509)
T KOG2504|consen  178 GTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP  222 (509)
T ss_pred             cCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence            223333333322     2  9999999766666444443333333

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=97.34  E-value=0.0063  Score=59.29  Aligned_cols=62  Identities=15%  Similarity=0.151  Sum_probs=52.8

Q ss_pred             HHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcc
Q 048319           20 EYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMS   82 (348)
Q Consensus        20 ~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s   82 (348)
                      .|+.+.+|++..+.+.+.........+..++++++.|| +||++.+.++..+..++.+++.+.
T Consensus       228 ~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~  289 (392)
T PRK10473        228 VLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGI-FKPRTLMLTSQVLFLAAGITLALS  289 (392)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHH
Confidence            35667789999998888888888888889999999999 599999999999988888877664

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.32  E-value=9.1e-06  Score=80.75  Aligned_cols=143  Identities=15%  Similarity=0.143  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCCcccccchhHHH
Q 048319           31 VHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECIVKGHKILF  110 (348)
Q Consensus        31 ~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~~c~~~~~~~~~  110 (348)
                      ...+.+.+.+.....+..+++|+++|| +|||+++.++.+++.+|.++...+...                   .+...+
T Consensus        46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~-~GRk~~~~~~~~~~~i~~~~~~~~~~~-------------------~~~~~~  105 (451)
T PF00083_consen   46 LLSSLLTSSFFIGAIVGALIFGFLADR-YGRKPALIISALLMIIGSILIAFAPSY-------------------NNFWML  105 (451)
T ss_pred             HHHHHHHHHHHhhhccccccccccccc-ccccccccccccccccccccccccccc-------------------cccccc
Confidence            345667778888888888999999999 599999999999999999888776310                   124567


Q ss_pred             HHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhccc---c---cchhhHHH
Q 048319          111 YAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYI---K---PWNLRFGV  181 (348)
Q Consensus       111 ~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi---~---g~~~~F~i  181 (348)
                      .++..+.++|.|+.-+....+..|.-+++    .|     ..+..++..+.+   +++......+   .   +|+..+.+
T Consensus       106 ~~~R~~~G~~~g~~~~~~~~~~~E~~~~~----~R-----~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~  176 (451)
T PF00083_consen  106 LIGRFLIGFGIGGAYVVSPIYISEIAPPK----HR-----GFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIF  176 (451)
T ss_pred             ccccccccccccccccccccccccccccc----cc-----cccccccccccccccccccccccccccccccccccccccc
Confidence            78889999999999999999988554332    22     222223222222   3333222211   2   49998887


Q ss_pred             HHHHHHHHH--HHHHhcCccccc
Q 048319          182 SAICTVIAT--LLFLSGTCTYEN  202 (348)
Q Consensus       182 ~~~~~~i~~--~vf~~g~~~y~~  202 (348)
                      +++..++..  ..++-.+|+|..
T Consensus       177 ~~~~~l~~~~~~~~~pESP~wL~  199 (451)
T PF00083_consen  177 GAIPSLLVLLLRFFLPESPRWLL  199 (451)
T ss_pred             cccccccccccccccccccceec
Confidence            665543322  234445566543

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=97.31  E-value=0.0037  Score=61.64  Aligned_cols=143  Identities=12%  Similarity=0.079  Sum_probs=84.7

Q ss_pred             HHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCC
Q 048319           18 MMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEY   97 (348)
Q Consensus        18 L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~   97 (348)
                      +..|+++..+ ++.+.+.+.............+.+.+.|+..+.++.+..+.++..++..++..+.              
T Consensus       231 ~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~--------------  295 (400)
T PRK11646        231 LPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS--------------  295 (400)
T ss_pred             hhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh--------------
Confidence            3455655444 5566666665555444444444466666666777778888888888876665431              


Q ss_pred             CCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhcccc-
Q 048319           98 KPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYIK-  173 (348)
Q Consensus        98 ~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi~-  173 (348)
                              +.....+...+.++|.+...|...+...+..++++      +   .+.+.++....+   .+++.+.+++- 
T Consensus       296 --------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~---g~~~g~~~~~~~~g~~ig~~l~G~l~~  358 (400)
T PRK11646        296 --------NLQQLFTLICLFYIGSIIAEPARETLSASLADARA------R---GSYMGFSRLGLALGGAIGYIGGGWLFD  358 (400)
T ss_pred             --------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------c---hhhhhHHHHHHHHHHHhcccchHHHHH
Confidence                    12334445566778888888999988888776543      2   444555444444   66666666542 


Q ss_pred             -c-----chhhHHHHHHHHHHHHHH
Q 048319          174 -P-----WNLRFGVSAICTVIATLL  192 (348)
Q Consensus       174 -g-----~~~~F~i~~~~~~i~~~v  192 (348)
                       +     ....|.+..+..+++.++
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        359 LGKALNQPELPWMMLGIIGLITLLA  383 (400)
T ss_pred             HHhhcCCcchHHHHHHHHHHHHHHH
Confidence             1     244555544444444443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=97.29  E-value=0.0051  Score=60.79  Aligned_cols=155  Identities=15%  Similarity=0.114  Sum_probs=108.5

Q ss_pred             HhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccC-CccCCC
Q 048319           13 FVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTP-PVLAGF   90 (348)
Q Consensus        13 yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~-p~~~~~   90 (348)
                      .-+ +.|..++.+++|+|+.|...++..=.....++-++=|++.||+ |.|++-.++.++..+-.+.++.+.. |     
T Consensus        30 W~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~l~~IP~~~~~~a~~~~-----  103 (417)
T COG2223          30 WTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSMLLLLIPCLGLAFAVTYP-----  103 (417)
T ss_pred             HHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHHHHHHHHHHHHHHccCC-----
Confidence            345 7888999999999999999999999999999999999999995 8888888888888887777776532 2     


Q ss_pred             CCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcch
Q 048319           91 VGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAII  167 (348)
Q Consensus        91 ~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~  167 (348)
                                     +.+.+++.=.++++|.|.+- .-.++...-|+++    +  +   .....++= ..|   .+...
T Consensus       104 ---------------~~~~ll~~gll~G~~GasFa-v~m~~~s~~fP~~----~--q---G~AlGI~g-~GN~G~av~q~  157 (417)
T COG2223         104 ---------------STWQLLVIGLLLGLAGASFA-VGMPNASFFFPKE----K--Q---GLALGIAG-AGNLGVAVAQL  157 (417)
T ss_pred             ---------------chHHHHHHHHHHhcccceeh-cccccccccCChh----h--h---hHHHHHhc-cccccHHHHHH
Confidence                           12334443346677766553 3334555555533    2  2   33444433 666   44444


Q ss_pred             hhcccc---c---chhhHHHHHHHHHHHHHHHHhcCcc
Q 048319          168 PISYIK---P---WNLRFGVSAICTVIATLLFLSGTCT  199 (348)
Q Consensus       168 ~~~yi~---g---~~~~F~i~~~~~~i~~~vf~~g~~~  199 (348)
                      +.+.+-   |   |+..-.+..+.++++.+.++++.+.
T Consensus       158 ~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d  195 (417)
T COG2223         158 VAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMND  195 (417)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            444432   6   9999999999999888888776654

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.29  E-value=0.0041  Score=62.78  Aligned_cols=105  Identities=17%  Similarity=0.133  Sum_probs=89.3

Q ss_pred             HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCC
Q 048319           16 WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCS   95 (348)
Q Consensus        16 ~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~   95 (348)
                      +.++.|.+..||.++..+............+..++.-.+.++ +||+++..++.++.+++.+++.+...           
T Consensus       257 s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~-~gkk~~~~~~~~~~~i~~~~~~f~~~-----------  324 (467)
T COG2211         257 SIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKK-FGKKKLFLIGLLLLAVGYLLLYFTPA-----------  324 (467)
T ss_pred             hhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hchHHHHHHHHHHHHHHHHHHHhhcC-----------
Confidence            556677778899999999888888888777778888999999 59999999999999999999998731           


Q ss_pred             CCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccch
Q 048319           96 EYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAIN  141 (348)
Q Consensus        96 ~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~  141 (348)
                               .+..+.++...+..+|.+..-+-..++++|-.|.++-
T Consensus       325 ---------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~  361 (467)
T COG2211         325 ---------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEW  361 (467)
T ss_pred             ---------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHH
Confidence                     2467788888899999999999999999998886543

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=97.29  E-value=0.0052  Score=63.28  Aligned_cols=148  Identities=12%  Similarity=0.133  Sum_probs=105.0

Q ss_pred             HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCC
Q 048319           16 WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCS   95 (348)
Q Consensus        16 ~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~   95 (348)
                      ..|..|..+.+|.+...-+.+.+++.....+..++.+.+.++ +++.+.+..+.+++.++++++.++.            
T Consensus       239 aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~-~~~~~lv~~~~~~~a~~~~~lal~~------------  305 (524)
T PF05977_consen  239 ALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRR-LSSRRLVLLASLLFALALLLLALSP------------  305 (524)
T ss_pred             HhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCcchhhHHHHHHHHHHHHHHhcch------------
Confidence            445567778899999999999999999999999999999888 6999999999988888877776642            


Q ss_pred             CCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhccc
Q 048319           96 EYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYI  172 (348)
Q Consensus        96 ~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi  172 (348)
                                +.+...+++.+.+++.........+..    +..-|++.  +   .|.++.|.+..+   .+|..+.+++
T Consensus       306 ----------~~~~~~~~l~l~G~~~~~~~~~~~t~~----Q~~~P~~~--~---GRv~si~~~~~~g~~~lGsll~G~l  366 (524)
T PF05977_consen  306 ----------SFWLALIALFLAGAAWIIANSSLNTLV----QLSVPDWV--R---GRVFSIYQMVFFGGMPLGSLLWGFL  366 (524)
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhCCHHH--H---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      234455566666666555443333322    23334433  4   678888887777   5566566655


Q ss_pred             c---cchhhHHHHHHHHHHHHHHHHh
Q 048319          173 K---PWNLRFGVSAICTVIATLLFLS  195 (348)
Q Consensus       173 ~---g~~~~F~i~~~~~~i~~~vf~~  195 (348)
                      .   |-..++.+++++++++.++.+.
T Consensus       367 a~~~g~~~al~~a~~~lll~~~~~~~  392 (524)
T PF05977_consen  367 ADHFGVRTALLIAGAALLLSALIALR  392 (524)
T ss_pred             HHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            4   7788888888887777766543

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=97.28  E-value=0.0079  Score=58.68  Aligned_cols=62  Identities=8%  Similarity=-0.069  Sum_probs=38.7

Q ss_pred             HHHHHHHhH-HHHHHHhhhhhCCchHHHHHHH--HH-HHHHHHHHhhhHHHHHhhhccchHHHHHHHH
Q 048319            7 ADCLAQFVM-WTMMEYLTEVWKISVVHAAGIV--NI-FSGLVLVLQLPMQYLVDTIISKYWMLVFSSL   70 (348)
Q Consensus         7 ~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~--~~-~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~   70 (348)
                      .+-+.+.=+ ..+..|++ +.|.+..+-+...  .. +..-....|+.+++.+|| +||||.+++...
T Consensus        12 ~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~-~g~r~~~i~~~~   77 (390)
T TIGR02718        12 SQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWR-LGRRRSWVLPMQ   77 (390)
T ss_pred             HHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCcchhHHHHHH
Confidence            333333333 44555554 5799998888763  22 333335666777888888 699999766653

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=97.26  E-value=0.0068  Score=59.61  Aligned_cols=144  Identities=10%  Similarity=0.011  Sum_probs=88.6

Q ss_pred             HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCC
Q 048319           16 WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCS   95 (348)
Q Consensus        16 ~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~   95 (348)
                      ..+..|+.+.+|++..+++.+...+.....+..++.+.+.|+ .++++.+..+..+ .++..++...             
T Consensus       226 ~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~-~~~~~~~~~g~~~-~~~~~~~~~~-------------  290 (393)
T PRK11195        226 FLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTL-ETVLRVLPAGILM-GLVVLLMALQ-------------  290 (393)
T ss_pred             HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccchHHHHHHH-HHHHHHHHHH-------------
Confidence            334467778899999999999988888888888889999998 4888888777533 3332222221             


Q ss_pred             CCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhccc
Q 048319           96 EYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYI  172 (348)
Q Consensus        96 ~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi  172 (348)
                               .+.....+.+.+.+++.|.+.+...+...+.    .|+|. .+   .+.+....+..|   .++..+...+
T Consensus       291 ---------~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~----~~~~~-~~---g~~~a~~~~~~~~~~~~~~~~~~~~  353 (393)
T PRK11195        291 ---------HSLLPAYPLLILIGALGGFFVVPMNALLQHR----GHVLV-GA---GHSIAVQNFNENLAMLLMLGLYSLL  353 (393)
T ss_pred             ---------hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhh----Ccccc-cc---hhHHHHHhHHHHHHHHHHHHHHHHH
Confidence                     0233445566678888888888777776432    22221 13   445555566666   3333333333


Q ss_pred             c--cchhhHHHHHHHHHHHHH
Q 048319          173 K--PWNLRFGVSAICTVIATL  191 (348)
Q Consensus       173 ~--g~~~~F~i~~~~~~i~~~  191 (348)
                      .  |=+..+.+..++.+++..
T Consensus       354 ~~~~~~~~~~~~~~~~~~~~~  374 (393)
T PRK11195        354 VKLGVPVVAVIVGFGLLVALA  374 (393)
T ss_pred             HHcCCCHHHHHHHHHHHHHHH
Confidence            3  555555555544444443

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.20  E-value=0.0048  Score=62.60  Aligned_cols=58  Identities=12%  Similarity=0.111  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhcc
Q 048319            3 ALLWADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIIS   60 (348)
Q Consensus         3 ~~e~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lG   60 (348)
                      +..++|..+++-+ ..+-.|+.+.||++..+.+.....=.....+..+++|++||+...
T Consensus       265 ~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~  323 (466)
T KOG2532|consen  265 ISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTF  323 (466)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4567889999999 889999999999999999999988888899999999999999866

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.19  E-value=0.0027  Score=62.90  Aligned_cols=144  Identities=12%  Similarity=0.059  Sum_probs=104.7

Q ss_pred             HHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCC
Q 048319           20 EYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKP   99 (348)
Q Consensus        20 ~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~   99 (348)
                      .|-.+.+|+++.+-..+--.-+..+.+..+++|+++|| +|-++++.++.+++.+-.+.+.....               
T Consensus       277 ~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~r-fg~k~vl~~~lvi~~~~~~~~~~~~~---------------  340 (438)
T COG2270         277 VFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDER-FGSKPVLMIGLVILSIAALYLIFLEG---------------  340 (438)
T ss_pred             HHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCceeehHHHHHHHHHHHHHHHccc---------------
Confidence            44455799999999888888888899999999999999 69999999999888876655554321               


Q ss_pred             cccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhccc-c--
Q 048319          100 ECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYI-K--  173 (348)
Q Consensus       100 ~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi-~--  173 (348)
                            ....+..| .++++..|+..+..=++.++..++++.         .++|..|-...-   .+++...+.+ +  
T Consensus       341 ------~~~f~i~g-ll~g~s~G~~qA~SRSy~~~lvp~~k~---------~~fFglyaltgra~S~~gp~lv~v~t~iT  404 (438)
T COG2270         341 ------ELDFWILG-LLVGTSLGGAQASSRSYLARLVPKGKE---------GRFFGLYALTGRAASFLGPFLVAVITQIT  404 (438)
T ss_pred             ------cHHHHHHH-HHHHHhcchHHHHHHHHHHHhCCCccc---------cceeehhhhhhhHHHHHHHHHHHHHHHHh
Confidence                  12333333 478999999999999999987775532         567887666555   5666555543 2  


Q ss_pred             -cchhhHHHHHHHHHHHHHHHHh
Q 048319          174 -PWNLRFGVSAICTVIATLLFLS  195 (348)
Q Consensus       174 -g~~~~F~i~~~~~~i~~~vf~~  195 (348)
                       +-+.++..-.+.+++++++++.
T Consensus       405 g~~r~g~~~i~vll~iGl~~L~~  427 (438)
T COG2270         405 GSSRAGVLSIIVLLLIGLLLLLR  427 (438)
T ss_pred             cchhhHHHHHHHHHHhhHhhEEe
Confidence             7777777666667777665543

>TIGR00898 2A0119 cation transport protein

Probab=97.13  E-value=0.0051  Score=62.13  Aligned_cols=119  Identities=15%  Similarity=0.042  Sum_probs=71.3

Q ss_pred             HHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcc
Q 048319           43 LVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASS  122 (348)
Q Consensus        43 ~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G  122 (348)
                      ......+++++++|| +|||+.+.++.++..++.+++.....                   . ......+...+..++.+
T Consensus       367 ~~i~~~~~~~~l~dr-~grr~~~~~~~~~~~~~~l~~~~~~~-------------------~-~~~~~~~~~~~~~~~~~  425 (505)
T TIGR00898       367 VELPAKLITLLLIDR-LGRRYTMAASLLLAGVALLLLLFVPV-------------------D-LYFLRTALAVLGKFGIT  425 (505)
T ss_pred             HHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHcCC-------------------C-chHHHHHHHHHHHHHHH
Confidence            445567788999999 59999999999888888776654311                   0 11222233334444555


Q ss_pred             cCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhcccc-cchhhHHHHHHHHHHHHH
Q 048319          123 SCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYIK-PWNLRFGVSAICTVIATL  191 (348)
Q Consensus       123 ~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi~-g~~~~F~i~~~~~~i~~~  191 (348)
                      +.-+....+.+|.++.+.      |   .....+......   .+++.+....+ ++...|.+.++..+++.+
T Consensus       426 ~~~~~~~~~~~e~~p~~~------r---~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~  489 (505)
T TIGR00898       426 SAFQMVYLYTAELYPTVV------R---NLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGI  489 (505)
T ss_pred             HHHHHHHHHhcccccHHH------H---hhhHhHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            555667777787776432      3   455666555544   55555554222 666666665555554443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=97.12  E-value=0.0093  Score=59.21  Aligned_cols=142  Identities=11%  Similarity=-0.028  Sum_probs=93.0

Q ss_pred             hH-HHHHHHhhh-hhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCC
Q 048319           14 VM-WTMMEYLTE-VWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFV   91 (348)
Q Consensus        14 g~-~~L~~Yl~~-~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~   91 (348)
                      ++ +.++.|+.+ ..+.+...++.....+.+...+.-+++++++|| ++++|.+.+...+..+.++++....        
T Consensus       250 ~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r-~~~~~~l~i~~~~~~~~~ll~~~~~--------  320 (410)
T TIGR00885       250 MCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISY-LAAHKVLMAYAIIGMALCLGSIFAG--------  320 (410)
T ss_pred             HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHcC--------
Confidence            44 556777654 235566667777777777788899999999999 5999999888888887777666531        


Q ss_pred             CCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh--hhcchhh
Q 048319           92 GTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP--VAAIIPI  169 (348)
Q Consensus        92 ~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in--~~~~~~~  169 (348)
                                    +. .....+.++++..+++-|.+.+...+..+++..     .   .+.  ..-+++-  .+.+.+.
T Consensus       321 --------------~~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~-----~---~s~--~l~~~~~Gga~~p~l~  375 (410)
T TIGR00885       321 --------------GH-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTK-----Y---GAA--GLVMAIIGGGIVPPLQ  375 (410)
T ss_pred             --------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-----h---hHH--HHHHHHhccchHHHHH
Confidence                          01 123556667777777779999999988875431     1   122  2223322  3333333


Q ss_pred             cccc---------cchhhHHHHHHHHHHH
Q 048319          170 SYIK---------PWNLRFGVSAICTVIA  189 (348)
Q Consensus       170 ~yi~---------g~~~~F~i~~~~~~i~  189 (348)
                      +++.         |++.+|.+|.++.+.-
T Consensus       376 G~~~d~~~~~~~~~~~~~~~~~~~~~~~~  404 (410)
T TIGR00885       376 GFIIDMKEIAAAPAVNTSFILPLLCFAVI  404 (410)
T ss_pred             HHHHHHhcccccCccchHHHHHHHHHHHH
Confidence            3332         3778899988887753

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.04  E-value=0.0038  Score=47.32  Aligned_cols=62  Identities=15%  Similarity=0.132  Sum_probs=49.6

Q ss_pred             HHHHhH-HHHHHHhhh---hhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHH
Q 048319           10 LAQFVM-WTMMEYLTE---VWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAY   72 (348)
Q Consensus        10 ~a~yg~-~~L~~Yl~~---~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~   72 (348)
                      |-|||- +.+..|+.-   ++|++..+.+.+.++-.....+.|.+.|++||++ ||+|.++.+..+.
T Consensus        10 f~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~~   75 (77)
T PF12832_consen   10 FFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHHH
Confidence            345555 555555442   4899999999999999999999999999999995 8888888776553

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=96.97  E-value=0.018  Score=57.01  Aligned_cols=151  Identities=15%  Similarity=0.196  Sum_probs=107.9

Q ss_pred             HHHHHHhhh---------hhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCc
Q 048319           16 WTMMEYLTE---------VWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPV   86 (348)
Q Consensus        16 ~~L~~Yl~~---------~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~   86 (348)
                      ..+-.++++         .+|++..+.+.+...|.+...+.=++.|++-.+.+|++++..+|+.+..++..++.+++.. 
T Consensus       220 ~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~-  298 (403)
T PF03209_consen  220 GTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPL-  298 (403)
T ss_pred             HHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhc-
Confidence            555566665         5899999999999999999988888999999988999999999999999999998887541 


Q ss_pred             cCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh----
Q 048319           87 LAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP----  162 (348)
Q Consensus        87 ~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in----  162 (348)
                                        .+.+.|..++.++++|+|.+-....+..-|.-++++.         .-+..-|=.+..    
T Consensus       299 ------------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~a---------G~~mG~WGaaQA~A~G  351 (403)
T PF03209_consen  299 ------------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRA---------GLFMGAWGAAQAIARG  351 (403)
T ss_pred             ------------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcch---------hHHHHHHHHHHHHHHH
Confidence                              1346889999999999999876666666655543321         111111111111    


Q ss_pred             ---hhcchhhccc------c---cchhhHHHHHHHHHHHHHHHH
Q 048319          163 ---VAAIIPISYI------K---PWNLRFGVSAICTVIATLLFL  194 (348)
Q Consensus       163 ---~~~~~~~~yi------~---g~~~~F~i~~~~~~i~~~vf~  194 (348)
                         +++..+.-..      +   +|...|.+-++.+++++++..
T Consensus       352 lg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~  395 (403)
T PF03209_consen  352 LGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLLG  395 (403)
T ss_pred             HHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence               2222211111      1   799999999999998877653

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=96.92  E-value=0.052  Score=53.97  Aligned_cols=69  Identities=16%  Similarity=0.035  Sum_probs=54.4

Q ss_pred             HHHHhH--HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhh
Q 048319           10 LAQFVM--WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLL   79 (348)
Q Consensus        10 ~a~yg~--~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll   79 (348)
                      |.-+|.  ..+.+|+.+ .|++..+.+.+.+.......+.|.+.|++|||+..++|.+.+..++..+...++
T Consensus        15 f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~   85 (400)
T PF03825_consen   15 FFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL   85 (400)
T ss_pred             HHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Confidence            344455  567777765 689999999999999999999999999999998777888877766655544333

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=96.74  E-value=0.052  Score=54.94  Aligned_cols=123  Identities=13%  Similarity=0.199  Sum_probs=84.8

Q ss_pred             HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhh---ccchHHH-HHHHHHHhhhhhhhhcccCCccCCCC
Q 048319           16 WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTI---ISKYWML-VFSSLAYSVGIGLLTMSTPPVLAGFV   91 (348)
Q Consensus        16 ~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~---lGr~~ti-~~~~~i~~~G~~ll~~s~~p~~~~~~   91 (348)
                      .-|..|.|+..|++.+.|+.+..+--..=-+.-.+-|++.||.   +||||=- +++.+-..+-..+++.+-        
T Consensus        33 ~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p--------  104 (467)
T COG2211          33 LYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITP--------  104 (467)
T ss_pred             HHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCC--------
Confidence            3456677889999999999999998888888888999999975   7887754 456677777777777651        


Q ss_pred             CCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh
Q 048319           92 GTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP  162 (348)
Q Consensus        92 ~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in  162 (348)
                       +-+       .+.+....++--.+..++.-.+.-.-.++.++.-+  ||+||      .+..+|-.+..|
T Consensus       105 -~~~-------~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~--d~~ER------~~l~s~R~~~~~  159 (467)
T COG2211         105 -DFS-------MTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQ--DPQER------ASLTSWRMVFAS  159 (467)
T ss_pred             -Ccc-------cCcchHHHHHHHHHHHHHHHheeCchhhcchhhcC--CHHHH------HHHHHHHHHHHH
Confidence             110       12234444445556677777777666777776544  56665      445666666555

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=96.72  E-value=0.038  Score=53.96  Aligned_cols=154  Identities=13%  Similarity=0.088  Sum_probs=114.0

Q ss_pred             HHHHHhHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccC
Q 048319            9 CLAQFVMWTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLA   88 (348)
Q Consensus         9 r~a~yg~~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~   88 (348)
                      |-++-++..+..=+++++|+|.+.|+.+...=...--++..++.+++.| +|..|++..+.++..+|..+=..       
T Consensus        25 R~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~-~g~er~l~~~Llli~~G~~iR~~-------   96 (395)
T COG2807          25 RPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARR-FGEERSLFLALLLIAAGILIRSL-------   96 (395)
T ss_pred             chhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HhhHHHHHHHHHHHHHHHHHHhc-------
Confidence            3334444556677788999999999999887666666777788899988 69999999999999999776332       


Q ss_pred             CCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhc
Q 048319           89 GFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAA  165 (348)
Q Consensus        89 ~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~  165 (348)
                                      .+...++.|-.+++.|.+....-+++++-+-|+++-          ...-..|-.+++   .++
T Consensus        97 ----------------~~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~----------~~mtglYs~sl~~~aaLa  150 (395)
T COG2807          97 ----------------GGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV----------GLMTGLYSTSLGAGAALA  150 (395)
T ss_pred             ----------------ccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch----------hhHHhHHHHHHHHHHHHH
Confidence                            135788899999999999888888888876666443          345566667777   555


Q ss_pred             chhhcccc----cchhhHHHHHHHHHHHHHHHHhc
Q 048319          166 IIPISYIK----PWNLRFGVSAICTVIATLLFLSG  196 (348)
Q Consensus       166 ~~~~~yi~----g~~~~F~i~~~~~~i~~~vf~~g  196 (348)
                      ....+.+.    ||+.+.+.=++.-++++++.+--
T Consensus       151 a~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq  185 (395)
T COG2807         151 AALAVPLAQHSGGWRGALGFWALLALLALLIWLPQ  185 (395)
T ss_pred             hhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhh
Confidence            55555553    79999887666666666655544

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=96.68  E-value=0.056  Score=50.34  Aligned_cols=63  Identities=16%  Similarity=0.102  Sum_probs=55.2

Q ss_pred             HHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccC
Q 048319           20 EYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTP   84 (348)
Q Consensus        20 ~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~   84 (348)
                      .-+.+.+|+++.+-+.+..+-....++ .++.|.+.|+ .|.+-++.+|.+...+|+.++.+.-.
T Consensus        26 ~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~-~gp~~~l~iG~~~~~~GY~~~~l~~~   88 (250)
T PF06813_consen   26 PQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDR-FGPWVVLLIGAVLGFVGYGLLWLAVS   88 (250)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345678999999999999888888886 5889999999 59999999999999999999988644

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=96.64  E-value=0.019  Score=57.22  Aligned_cols=57  Identities=18%  Similarity=0.065  Sum_probs=45.0

Q ss_pred             HhH--HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHH
Q 048319           13 FVM--WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSL   70 (348)
Q Consensus        13 yg~--~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~   70 (348)
                      +|+  +.+..+|++..|++.++.+.+.++-.....+...+.|+++|| +|.+|.+++...
T Consensus        23 ~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dk-lg~kK~Ll~~i~   81 (412)
T PF01306_consen   23 WGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDK-LGLKKHLLWFIA   81 (412)
T ss_dssp             HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHH-CTTCSHHHHHHH
T ss_pred             HHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcch-hhhhHHHHHHHH
Confidence            455  667788888899999999999999999999999999999999 687777655443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=96.50  E-value=0.016  Score=58.23  Aligned_cols=92  Identities=13%  Similarity=-0.065  Sum_probs=71.6

Q ss_pred             CchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCCcccccchh
Q 048319           28 ISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECIVKGHK  107 (348)
Q Consensus        28 ~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~~c~~~~~~  107 (348)
                      ++....+.+..+-.....+.+++-||++|+ +||++..-...++.+++.++..++-.   ++  +          .....
T Consensus        81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~-~GRK~vYG~~liImIi~t~~~~~s~~---~~--~----------~~~~m  144 (538)
T KOG0252|consen   81 YPSGVLALVNAAALVGTIFGQLFFGWLGDK-FGRKKVYGKELIIMIICSALSGLSVG---TT--S----------PLGVM  144 (538)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhh-hcchhhhhHHHHHHHHHHHHhccCCC---CC--C----------Ccchh
Confidence            677777788887778889999999999999 59999999999999999885544322   11  0          11235


Q ss_pred             HHHHHHHHHHHHhcccCCcchhHHHHHh
Q 048319          108 ILFYAALGLLAFASSSCSVESTEFAEEQ  135 (348)
Q Consensus       108 ~~~~~~L~liaiG~G~~k~~v~~~~adq  135 (348)
                      ..+..-..++++|.||--|+.++...|+
T Consensus       145 ~~L~~~R~~LGiGIGGDYPlSAtI~SE~  172 (538)
T KOG0252|consen  145 MTLCFFRFLLGIGIGGDYPLSATIMSES  172 (538)
T ss_pred             hHHHHHHHHhhccccCCCcchHHHhhhh
Confidence            6677778899999999999988877743

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=96.49  E-value=0.078  Score=51.91  Aligned_cols=154  Identities=12%  Similarity=0.040  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhc--cchHHHHH-HHHHHhhhhhh
Q 048319            3 ALLWADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTII--SKYWMLVF-SSLAYSVGIGL   78 (348)
Q Consensus         3 ~~e~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~l--Gr~~ti~~-~~~i~~~G~~l   78 (348)
                      +..++--.++|++ .-+..|+.+ .|++.. ++........   ...+..++++|+..  |||+.... ...+..++..+
T Consensus       199 ~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~---~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~  273 (368)
T TIGR00903       199 AILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAIL---AGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLA  273 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHH---HHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            3456667788888 778888864 678764 3333222222   22344689999852  33333332 33333333333


Q ss_pred             hhcccCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHH
Q 048319           79 LTMSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLL  158 (348)
Q Consensus        79 l~~s~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y  158 (348)
                      +..+.                      +.....+.+.+.+++.++.-+...++.+|.++++.      |   .+...+.+
T Consensus       274 ~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------r---gt~~G~~~  322 (368)
T TIGR00903       274 LAFEL----------------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL------H---GKAAGAIG  322 (368)
T ss_pred             HHHcc----------------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh------c---Ccccchhh
Confidence            32211                      01122233334445555555667788888886543      4   66788888


Q ss_pred             HHHh---hhcchhhcccc-cchhhHHHHHHHHHHHHHH
Q 048319          159 FMVP---VAAIIPISYIK-PWNLRFGVSAICTVIATLL  192 (348)
Q Consensus       159 ~~in---~~~~~~~~yi~-g~~~~F~i~~~~~~i~~~v  192 (348)
                      ...|   .+++.+.+.+. |....|.+-++..+++.++
T Consensus       323 ~~g~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~~~  360 (368)
T TIGR00903       323 FTSRAISVALALAAMLFISSAEAYFTFLAILITIAFAI  360 (368)
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            8888   34454444333 6666666555555554443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=96.49  E-value=0.028  Score=56.98  Aligned_cols=126  Identities=8%  Similarity=-0.080  Sum_probs=80.4

Q ss_pred             HHHhhhccchHHH--HHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhH
Q 048319           53 YLVDTIISKYWML--VFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTE  130 (348)
Q Consensus        53 ~lAD~~lGr~~ti--~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~  130 (348)
                      .+.||..+.....  .+|.++..+|.+.+.+...-...+             ...+.+.+.....+.++|....-|...+
T Consensus       338 ~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~-------------~~~s~~~~i~~~~~~~~ge~~~~p~~~~  404 (475)
T TIGR00924       338 RLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAG-------------GLTSPWFMVLIYLFQTLGELMISPLGLS  404 (475)
T ss_pred             HHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCC-------------CccCHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            4555533333333  778888888888776532100000             0124567888999999999999999999


Q ss_pred             HHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhccc--c-cchhhHHHHHHHHHHHHHHHHhcCccc
Q 048319          131 FAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYI--K-PWNLRFGVSAICTVIATLLFLSGTCTY  200 (348)
Q Consensus       131 ~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi--~-g~~~~F~i~~~~~~i~~~vf~~g~~~y  200 (348)
                      +.+++-+++.      |   .++...++.+..   .+++.+....  . ||..-|+..++.+++..++++..+|+.
T Consensus       405 ~~~~~aP~~~------~---g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  471 (475)
T TIGR00924       405 WWTKIAPQRL------M---GQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVPWL  471 (475)
T ss_pred             HHHHhCCHHH------H---HHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9997655432      3   455555555443   5555444433  2 788889988888887777776655543

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=96.43  E-value=0.074  Score=54.16  Aligned_cols=62  Identities=15%  Similarity=0.094  Sum_probs=54.3

Q ss_pred             hhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccC
Q 048319           22 LTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTP   84 (348)
Q Consensus        22 l~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~   84 (348)
                      +...-|+++.+|.......+....++.++|.++-|| +|||+.++++..++.+-.+++++...
T Consensus       296 i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~-~gRRpLll~~~~~~~~~~~~~~~~~~  357 (485)
T KOG0569|consen  296 IFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDR-LGRRPLLLISLSLMAVALLLMSIALF  357 (485)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            334579999999999999999999999999999999 59999999999999988888876543

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=96.42  E-value=0.037  Score=56.85  Aligned_cols=159  Identities=15%  Similarity=0.149  Sum_probs=106.2

Q ss_pred             HHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCc
Q 048319            8 DCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPV   86 (348)
Q Consensus         8 Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~   86 (348)
                      -.++|+-. ..|..|.. ..|+++.+++.+++.......+.-++.|++||+. ..++..+....+...|+..+.+   | 
T Consensus       310 ~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~gl~~~~~---p-  383 (509)
T KOG2504|consen  310 AYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIAGLARLFL---P-  383 (509)
T ss_pred             HHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHHHHHHHHH---H-
Confidence            34444444 44555555 6899999999999999999999999999999995 4444444444444555555433   1 


Q ss_pred             cCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---h
Q 048319           87 LAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---V  163 (348)
Q Consensus        87 ~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~  163 (348)
                            .|          .....+..--.+.++..|.+-...+....|..+.++      .   .+.|.+..+...   +
T Consensus       384 ------~~----------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------l---~~a~Gl~l~~~gi~~l  438 (509)
T KOG2504|consen  384 ------FA----------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------L---SNAYGLLLLFQGIGAL  438 (509)
T ss_pred             ------Hh----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------c---chHHHHHHHHhHHHHH
Confidence                  12          123445555556777777776666666666666442      3   556666555444   6


Q ss_pred             hcchhhcccc----cchhhHHHHHHHHHHHHHHHHhcC
Q 048319          164 AAIIPISYIK----PWNLRFGVSAICTVIATLLFLSGT  197 (348)
Q Consensus       164 ~~~~~~~yi~----g~~~~F~i~~~~~~i~~~vf~~g~  197 (348)
                      +++-+..++.    +|...|-.+.+.++++....+..+
T Consensus       439 ~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  439 VGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             cCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            6666666664    699999999999998886665544

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=96.41  E-value=0.016  Score=59.28  Aligned_cols=137  Identities=13%  Similarity=0.017  Sum_probs=92.9

Q ss_pred             hhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCCccccc
Q 048319           25 VWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECIVK  104 (348)
Q Consensus        25 ~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~~c~~~  104 (348)
                      .+|+...+=+.+.++|...-.+.-++++++.||+ .-.+.+....+.    ..++++.+.                  -.
T Consensus        75 dl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~----w~~~~~~~~------------------~~  131 (495)
T KOG2533|consen   75 DLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGIL----WGLFGFLTA------------------AV  131 (495)
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHH----HHHHHHHHH------------------HH
Confidence            5677788888888999999999999999999994 733333332222    222221100                  00


Q ss_pred             chhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhccc-------c-
Q 048319          105 GHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYI-------K-  173 (348)
Q Consensus       105 ~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi-------~-  173 (348)
                      .+.+.+.+--.++++-.++.-|+.....+.=|++++   +      ..-+.+||-+.+   .+|+.+...+       . 
T Consensus       132 ~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e---~------g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~  202 (495)
T KOG2533|consen  132 HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE---R------GLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGL  202 (495)
T ss_pred             hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh---h------hhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCc
Confidence            134566677789999999999999999999998653   2      233666666555   5555554442       1 


Q ss_pred             -cchhhHHHHHHHHHHHHHHH
Q 048319          174 -PWNLRFGVSAICTVIATLLF  193 (348)
Q Consensus       174 -g~~~~F~i~~~~~~i~~~vf  193 (348)
                       ||++.|+|+++.+++..++.
T Consensus       203 ~gW~~~FiI~G~i~~~~gi~~  223 (495)
T KOG2533|consen  203 AGWRWLFIIEGVITLVLGIVV  223 (495)
T ss_pred             CCceeehhHHHHHHHHHHheE
Confidence             99999999998777555433

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=96.41  E-value=0.057  Score=53.45  Aligned_cols=139  Identities=12%  Similarity=0.031  Sum_probs=78.5

Q ss_pred             HHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCcc
Q 048319            9 CLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVL   87 (348)
Q Consensus         9 r~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~   87 (348)
                      ...+++. ..+-.|+.+.+|++..+++.......+...+...+.+.+.++. +++|.+.....+..+|..++.+...  .
T Consensus       231 ~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~ig~~l~~~~~~--~  307 (413)
T PRK15403        231 YIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLVGLALLIVGNL--L  307 (413)
T ss_pred             HHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHHHHHHHHHHHH--H
Confidence            3344444 4445677778899999998877666555555554444444332 4445555555555666655544321  0


Q ss_pred             CCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHhhhcch
Q 048319           88 AGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVPVAAII  167 (348)
Q Consensus        88 ~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in~~~~~  167 (348)
                      .+               ......++++.+.++|.|..-|++....-.|.+..  +.  +.   ++.++-..+....++..
T Consensus       308 ~~---------------~~~~~~~~~~~l~~~G~~~~~p~~~~~al~~~~~~--~G--~a---~a~~~~~~~~~~~~~~~  365 (413)
T PRK15403        308 WP---------------HVWLWSVLGTSLYAFGIGLIFPTLFRFTLFSNNLP--KG--TV---SASLNMVILMVMAVSVE  365 (413)
T ss_pred             cc---------------ccHHHHHHHHHHHHHHHHHHhHHHHHHHhccCCCC--Cc--HH---HHHHHHHHHHHHHHHHH
Confidence            01               01234567888889999999999886443333322  21  23   55566555555544444


Q ss_pred             hhccc
Q 048319          168 PISYI  172 (348)
Q Consensus       168 ~~~yi  172 (348)
                      ...|+
T Consensus       366 ~~g~~  370 (413)
T PRK15403        366 IGRWL  370 (413)
T ss_pred             HHHHH
Confidence            44454

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=96.25  E-value=0.054  Score=54.37  Aligned_cols=148  Identities=11%  Similarity=0.066  Sum_probs=90.4

Q ss_pred             HHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhh--cc--chHHHHHHHHHHhhhhhhhhcccCCccCCCCC
Q 048319           17 TMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTI--IS--KYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVG   92 (348)
Q Consensus        17 ~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~--lG--r~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~   92 (348)
                      ....|+.+.||++.++.+.. ......=+..-.+-|.++|.+  .|  ||.=++++.++..++...+.+...  .     
T Consensus        11 ~~~~~l~~~l~ls~~~~~~~-~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~--~-----   82 (433)
T PF03092_consen   11 AIYPFLKDDLGLSPAQLQRL-SSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPA--S-----   82 (433)
T ss_pred             HHHHHHHHHcCCCHHHHHHH-HHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccc--c-----
Confidence            34567888999999987654 444455556667788999998  34  555567788777666665554321  0     


Q ss_pred             CCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhh
Q 048319           93 TCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPI  169 (348)
Q Consensus        93 ~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~  169 (348)
                                 ........+.+.+..+|.....-..-++..|.-+++. +++.+.   +   ++.|.+.+   +++....
T Consensus        83 -----------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p-~~~g~l---q---S~~~~~~~~G~lv~~~l~  144 (433)
T PF03092_consen   83 -----------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREP-ESRGDL---Q---SFVWGVRSVGSLVGSLLS  144 (433)
T ss_pred             -----------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCC-chhHHH---H---HHHHHHHHHHHHHHHHhh
Confidence                       0122344556677888888888778888887665543 322223   3   34444433   4444333


Q ss_pred             cccc---cchhhHHHHHHHHHHHH
Q 048319          170 SYIK---PWNLRFGVSAICTVIAT  190 (348)
Q Consensus       170 ~yi~---g~~~~F~i~~~~~~i~~  190 (348)
                      +++-   +++..|.+.++.-++..
T Consensus       145 G~l~~~~~~~~~f~i~~~~~~l~~  168 (433)
T PF03092_consen  145 GPLLDSFGPQGVFLISAALPLLML  168 (433)
T ss_pred             hhhhhcCCCeEEehHHHHHHHHHH
Confidence            3332   77778887766555553

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=96.16  E-value=0.17  Score=49.25  Aligned_cols=98  Identities=10%  Similarity=-0.084  Sum_probs=57.4

Q ss_pred             HHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCC
Q 048319           20 EYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKP   99 (348)
Q Consensus        20 ~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~   99 (348)
                      .|+.+.+|++..+++.+.........+...+++++.||+ ||  ....+.....++.+++.+.....             
T Consensus       232 ~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~-------------  295 (394)
T PRK11652        232 VLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-ST--LMWQSVICCLLAGLLMWIPGWFG-------------  295 (394)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHHHHHHhc-------------
Confidence            466667899988887776655555555556666666664 42  23333333333333322211100             


Q ss_pred             cccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhh
Q 048319          100 ECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLE  137 (348)
Q Consensus       100 ~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~  137 (348)
                          ......+..+..+.++|.|..-|...+...|.++
T Consensus       296 ----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  329 (394)
T PRK11652        296 ----VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP  329 (394)
T ss_pred             ----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence                0123445667778888999888888888877665

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=95.89  E-value=0.03  Score=57.25  Aligned_cols=81  Identities=15%  Similarity=0.103  Sum_probs=63.8

Q ss_pred             hHHHHHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhh---ccchHHHHHHH-HHHhhhh
Q 048319            2 AALLWADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTI---ISKYWMLVFSS-LAYSVGI   76 (348)
Q Consensus         2 ~~~e~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~---lGr~~ti~~~~-~i~~~G~   76 (348)
                      ++..+|-...-||. .-+.+|+++..|++..+++.+...+.+...+..++.|+++||.   ..++..+..+. +...+|+
T Consensus       279 ~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~  358 (495)
T KOG2533|consen  279 SLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGA  358 (495)
T ss_pred             HHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            56677888888888 8888999987789999999999999999999999999999994   45555555544 4445565


Q ss_pred             hhhhcc
Q 048319           77 GLLTMS   82 (348)
Q Consensus        77 ~ll~~s   82 (348)
                      +.+...
T Consensus       359 ~~l~~~  364 (495)
T KOG2533|consen  359 ISLLAA  364 (495)
T ss_pred             HHHHhh
Confidence            555544

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=95.52  E-value=0.1  Score=53.19  Aligned_cols=167  Identities=5%  Similarity=-0.042  Sum_probs=90.9

Q ss_pred             HHHhH-HHHHHHhhhhhCCchH----HHHHHHHHHHHHH-HHHhhhHHHHHhhhccchHH-------HHHHHHHHhhhhh
Q 048319           11 AQFVM-WTMMEYLTEVWKISVV----HAAGIVNIFSGLV-LVLQLPMQYLVDTIISKYWM-------LVFSSLAYSVGIG   77 (348)
Q Consensus        11 a~yg~-~~L~~Yl~~~l~~~~~----~A~~i~~~~~~~~-~~~pl~gg~lAD~~lGr~~t-------i~~~~~i~~~G~~   77 (348)
                      .|..+ ..+..|.++..+.+..    .++.+.+...... .+.|+ .|.+.|| +|||+.       +.+|.++..+|.+
T Consensus       284 ~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl-~~~l~~r-l~~r~~~~~~~~k~~~G~~l~~~~~~  361 (489)
T PRK10207        284 LYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPI-LAGIYTH-LGSKGKDLSMPMKFTLGMFLCSLGFL  361 (489)
T ss_pred             HHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHH-HHHHHHH-HhhCCCCCCcHHHHHHHHHHHHHHHH
Confidence            34445 5666676643333211    1223323222334 44455 5689999 598873       7788888888876


Q ss_pred             hhhcccCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHH
Q 048319           78 LLTMSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLL  157 (348)
Q Consensus        78 ll~~s~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~  157 (348)
                      .+++...... .   .+        ...+.+.+.....+.++|.+..-|...++..+.-+++.      +   ...-..+
T Consensus       362 ~~~~~~~~~~-~---~~--------~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~------~---g~~~g~~  420 (489)
T PRK10207        362 TAAAAGMWFA-D---AQ--------GLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHL------M---GFILGMW  420 (489)
T ss_pred             HHHHHHHhhc-C---CC--------CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHH------H---HHHHHHH
Confidence            5542211000 0   00        01124456677888999999999998888886544322      2   3344454


Q ss_pred             HHHHh---hhcchhhccc-----------c--cchhhHHHHHHHHHHHHHHHHhcCccc
Q 048319          158 LFMVP---VAAIIPISYI-----------K--PWNLRFGVSAICTVIATLLFLSGTCTY  200 (348)
Q Consensus       158 y~~in---~~~~~~~~yi-----------~--g~~~~F~i~~~~~~i~~~vf~~g~~~y  200 (348)
                      +...+   .++..+..+.           +  .+...|..-++..++..++++.-.|++
T Consensus       421 ~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~  479 (489)
T PRK10207        421 FLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALMVPWL  479 (489)
T ss_pred             HHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54444   4444333222           1  356677766666665555555544443

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=95.50  E-value=0.4  Score=42.68  Aligned_cols=93  Identities=14%  Similarity=0.054  Sum_probs=67.7

Q ss_pred             hhCCch--HHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCCccc
Q 048319           25 VWKISV--VHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECI  102 (348)
Q Consensus        25 ~l~~~~--~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~~c~  102 (348)
                      .++.+.  ...+.+...+.....+.+++.|.++|++ ||++.+..+.....++.++......                  
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~------------------   91 (338)
T COG0477          31 TLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN------------------   91 (338)
T ss_pred             HcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc------------------
Confidence            444444  4677777777777777779999999998 9998888888776666444443311                  


Q ss_pred             ccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhc
Q 048319          103 VKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEI  138 (348)
Q Consensus       103 ~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~  138 (348)
                        .....+.+...+.+++.|...|...+..+|.+++
T Consensus        92 --~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  125 (338)
T COG0477          92 --VGLALLLILRLLQGLGGGGLLPVASALLSEWFPE  125 (338)
T ss_pred             --chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc
Confidence              1245555566668889898999999999998886

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=95.31  E-value=1.1  Score=44.33  Aligned_cols=170  Identities=16%  Similarity=0.066  Sum_probs=97.1

Q ss_pred             hhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCCcccc
Q 048319           24 EVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECIV  103 (348)
Q Consensus        24 ~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~~c~~  103 (348)
                      ...|.+..++..+.........+.....|.++|+ +||+|...+...+..+--++=..+  |                  
T Consensus       106 ~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~-~grr~~f~~T~l~t~v~~~is~~s--p------------------  164 (528)
T KOG0253|consen  106 EVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADT-IGRRKGFNLTFLVTGVFGVISGAS--P------------------  164 (528)
T ss_pred             hhhchhhhhhhHHHHHHHhhhhhhhhhhheehhh-hhcchhhhhhHHHHHHHHHhhcCC--C------------------
Confidence            4578889999888887777778888899999999 599998877655544322211111  2                  


Q ss_pred             cchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh-----hhcchhhcccccchhh
Q 048319          104 KGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP-----VAAIIPISYIKPWNLR  178 (348)
Q Consensus       104 ~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in-----~~~~~~~~yi~g~~~~  178 (348)
                        +...+.+--+++++|.|| -|-..+.-++-.+..+    +.+   ..... ++|.+-     +++-.+++.. ||++-
T Consensus       165 --nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~----r~~---~~V~~-~~waig~v~ea~law~vm~~~-gwr~~  232 (528)
T KOG0253|consen  165 --NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH----RWL---LTVMS-FFWAIGQVFEALLAWGVMSNF-GWRYL  232 (528)
T ss_pred             --CeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC----CCc---chhHH-HHHHHHHHHHHHHHHHHHHhh-hHHHH
Confidence              344555666788999999 6777777666555433    223   33333 667666     2222222222 77765


Q ss_pred             H-HHHHHHHHHHHHHHHh-cCcccccCCCCCCchhHHHHHHHHHHhhccCCCC
Q 048319          179 F-GVSAICTVIATLLFLS-GTCTYENKEPEGSPLTSVFRVFVASTTKLFYRLP  229 (348)
Q Consensus       179 F-~i~~~~~~i~~~vf~~-g~~~y~~~~p~gs~l~~~~~V~~~a~~~~~~~~~  229 (348)
                      . ....-.|+.+...++. .+++|.-  .+|++- +....+....|-.+.++|
T Consensus       233 l~~~~~pl~~~a~f~~w~~ESpRf~~--~~G~~~-kAletL~kiArmNg~qlp  282 (528)
T KOG0253|consen  233 LFTSSTPLMFAARFLVWVYESPRFYL--AKGDDY-KALETLHKIARMNGKQLP  282 (528)
T ss_pred             HHHHHhHHHHHHHHHhhcccCcchhh--hcCChH-HHHHHHHHHHHhcCCCCC
Confidence            3 3444445555544433 4555543  335542 223333333343344444

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=95.16  E-value=0.38  Score=47.54  Aligned_cols=88  Identities=17%  Similarity=0.042  Sum_probs=64.1

Q ss_pred             chHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCCcccccchhH
Q 048319           29 SVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECIVKGHKI  108 (348)
Q Consensus        29 ~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~~c~~~~~~~  108 (348)
                      +.--|+-+-+.|+..-.+++.+.|-++|+| |||.+|+.+.+..++.+.+...+.                      +..
T Consensus        66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S~----------------------~F~  122 (451)
T KOG2615|consen   66 SVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALSR----------------------NFA  122 (451)
T ss_pred             cchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHHH----------------------HHH
Confidence            446677888999999999999999999997 999999999999999777776652                      223


Q ss_pred             HHHHHHHHHHHhcccCCcchhHHHHHhhhccc
Q 048319          109 LFYAALGLLAFASSSCSVESTEFAEEQLEIAI  140 (348)
Q Consensus       109 ~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~  140 (348)
                      .+.++-.+.++-.|-+. .+-+.++|.+.|++
T Consensus       123 afv~aR~l~Gi~kgnl~-v~rAiisdV~sek~  153 (451)
T KOG2615|consen  123 AFVLARFLGGIFKGNLS-VIRAIISDVVSEKY  153 (451)
T ss_pred             HHHHHHHhhhhccCchH-HHHHHHHhhcChhh
Confidence            44455555555444432 22366778777643

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=94.88  E-value=0.94  Score=45.60  Aligned_cols=71  Identities=13%  Similarity=0.241  Sum_probs=60.1

Q ss_pred             HHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCC
Q 048319           17 TMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAG   89 (348)
Q Consensus        17 ~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~   89 (348)
                      ...+|.+..+| +...+.....+|+.....+-+.|-|+.|+ .|=|.+.++++....+|-.+=.+++.|.+.|
T Consensus        66 ~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk-~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~  136 (480)
T KOG2563|consen   66 PINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDK-FGLRTALLLGTVLNGIGAWIRLISSLPFVPP  136 (480)
T ss_pred             hHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcc-cchHHHHHHHHHHHHHHHHHhhhccCccccc
Confidence            35566666677 77777788888999999999999999999 5999999999999999999888887776544

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=94.64  E-value=0.0071  Score=62.47  Aligned_cols=78  Identities=12%  Similarity=0.042  Sum_probs=0.0

Q ss_pred             HHHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhccc
Q 048319            5 LWADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMST   83 (348)
Q Consensus         5 e~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~   83 (348)
                      .+.+ ...+|. ..-+.-+.+.++++.++++.+.+.+.....++.++-+|.+++. -|=|-|-+|+++..+|.++.++-+
T Consensus        12 ~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~lPh   89 (539)
T PF03137_consen   12 GLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFALPH   89 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHhccH
Confidence            3444 555565 4445566778999999999999999999999999999999984 777888889999999999988755


Q ss_pred             C
Q 048319           84 P   84 (348)
Q Consensus        84 ~   84 (348)
                      .
T Consensus        90 f   90 (539)
T PF03137_consen   90 F   90 (539)
T ss_dssp             -
T ss_pred             h
Confidence            5

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PTZ00207 hypothetical protein; Provisional

Probab=94.10  E-value=0.21  Score=52.30  Aligned_cols=134  Identities=10%  Similarity=-0.014  Sum_probs=90.9

Q ss_pred             hh-CCchHH--HHHHHHHHHHHHHHHhhhHHHHHhhhccchH-------HHH--HHHHHHhhhhhhhhcccCCccCCCCC
Q 048319           25 VW-KISVVH--AAGIVNIFSGLVLVLQLPMQYLVDTIISKYW-------MLV--FSSLAYSVGIGLLTMSTPPVLAGFVG   92 (348)
Q Consensus        25 ~l-~~~~~~--A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~-------ti~--~~~~i~~~G~~ll~~s~~p~~~~~~~   92 (348)
                      .| |.+...  .+..++.++.++++.-+.+|++. .++=||+       |+.  +..+ ..+++++++++ .|       
T Consensus       382 sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~-~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~-~p-------  451 (591)
T PTZ00207        382 ALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFE-IWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLT-LP-------  451 (591)
T ss_pred             HhcCCCCCccceeeehhhhhHHHHhhHHHHHHHH-HHHHhhccccccchhHHHHHHHH-HHHHHHHHHHH-CC-------
Confidence            46 663333  33368888889999999999998 5555554       333  3444 77788888775 22       


Q ss_pred             CCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh----hhcchh
Q 048319           93 TCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP----VAAIIP  168 (348)
Q Consensus        93 ~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in----~~~~~~  168 (348)
                                    ...+|++-.+++++.|..-+...+...+.|. +|.         ...||.-+.+.-    ++...+
T Consensus       452 --------------~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~---------g~~yN~~~~a~pigs~~~n~~l  507 (591)
T PTZ00207        452 --------------KAALPLPYFIAAFANGFMAATIALVTRTIFA-KDP---------AKHYNFCFLGSVLSAIFLNRLL  507 (591)
T ss_pred             --------------ccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cch---------HHHhhHHhHHHHHHHHHHHHHH
Confidence                          1468999999999999999999999999999 654         335665444322    222222


Q ss_pred             hccc--------------c--cchhhHHHHHHHHHHHHHH
Q 048319          169 ISYI--------------K--PWNLRFGVSAICTVIATLL  192 (348)
Q Consensus       169 ~~yi--------------~--g~~~~F~i~~~~~~i~~~v  192 (348)
                      .+++              +  +++..|+|-+++.+++.++
T Consensus       508 ~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~  547 (591)
T PTZ00207        508 YGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFIT  547 (591)
T ss_pred             HHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHH
Confidence            3322              1  7999999877766666554

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.03  E-value=0.27  Score=52.35  Aligned_cols=174  Identities=13%  Similarity=0.150  Sum_probs=106.5

Q ss_pred             hH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccC---Ccc--
Q 048319           14 VM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTP---PVL--   87 (348)
Q Consensus        14 g~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~---p~~--   87 (348)
                      |. ...++=+.+.++++..+.+.+.+.+....-++-++-.|.+-|. =|=|.|-+|++++.+|.++.++-+.   |.-  
T Consensus       114 ~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~  192 (735)
T KOG3626|consen  114 GYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYE  192 (735)
T ss_pred             hhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHHHHHHHHhChHHhcCcchhh
Confidence            44 4445555567899999999999999999999999999998883 7888899999999999999887533   110  


Q ss_pred             --C---CC--C-------------CCCCCCCCcc--c---ccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchh
Q 048319           88 --A---GF--V-------------GTCSEYKPEC--I---VKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINE  142 (348)
Q Consensus        88 --~---~~--~-------------~~c~~~~~~c--~---~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~  142 (348)
                        .   +.  +             ..|......|  +   +..-+.++++|..+.++|.--+-|    +|---.||...+
T Consensus       193 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t----lGisYiDDnvk~  268 (735)
T KOG3626|consen  193 LEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT----LGISYIDDNVKK  268 (735)
T ss_pred             hhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc----CCCccccccccc
Confidence              0   00  0             1111111222  1   111345778888888888765554    444444444332


Q ss_pred             hhhhhhhhhhHHHHHHHHHh---hhcchhhcc----------------------cccchhhHHHHHHHHHHHHHHHHhcC
Q 048319          143 HISLSLIQREFFKLLLFMVP---VAAIIPISY----------------------IKPWNLRFGVSAICTVIATLLFLSGT  197 (348)
Q Consensus       143 e~~~~~~~~~~f~~~y~~in---~~~~~~~~y----------------------i~g~~~~F~i~~~~~~i~~~vf~~g~  197 (348)
                      ++  .   ..++..+|.+--   .+|.++.++                      |..||+||++++.+++++.+.+++--
T Consensus       269 ~~--S---plYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fP  343 (735)
T KOG3626|consen  269 KN--S---PLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFP  343 (735)
T ss_pred             cC--C---cHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            21  2   334444443211   222222221                      11699999999988887766555433

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=93.57  E-value=0.03  Score=58.28  Aligned_cols=125  Identities=17%  Similarity=0.162  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCCcccccchhHHHHHHH
Q 048319           35 GIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECIVKGHKILFYAAL  114 (348)
Q Consensus        35 ~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L  114 (348)
                      .....+....+..+..+.-.+      +|+.-+-+..+.+|..++--.+...+.                 +..+.|...
T Consensus        10 ~~~~~~~~~d~~~~~~~~~~~------~~~g~~~s~~~il~~e~~e~~a~~g~~-----------------~nlv~ylt~   66 (571)
T KOG1237|consen   10 VIYHDFTSVDYRGPLLGSSIA------FKTGGWLSAPFILGNEVLERLAFFGLV-----------------SNLVTYLTL   66 (571)
T ss_pred             hhccccceeeccCCccccccc------ceechhHhHHHHHHHHHHHHHhHhcch-----------------hHHHHHHHH
Confidence            334444445555555444333      566666677778888777766553221                 235667777


Q ss_pred             HHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHhhhcchhhcccccchhhHHHHHHHHHHHHHHHH
Q 048319          115 GLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVPVAAIIPISYIKPWNLRFGVSAICTVIATLLFL  194 (348)
Q Consensus       115 ~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in~~~~~~~~yi~g~~~~F~i~~~~~~i~~~vf~  194 (348)
                      .+..-+ ++.++|++.++|+|+....-.  +.+   ...|...|+.||..+.+-      ..-.|+++...++.++..+-
T Consensus        67 ~~~~~~-~~aa~~v~~f~G~~~~~~l~g--~~l---aD~f~gry~tI~~~s~i~------~~G~~~lt~~a~~~~l~p~~  134 (571)
T KOG1237|consen   67 ELHASG-GGAANNVNAFGGTQFLLPLLG--AFL---ADSFLGRYFTINIGSLIS------LLGLFGLTLSAMIPALLPFM  134 (571)
T ss_pred             Hhccch-HHHHHHHHHHhhHHHHHHHHH--HHH---HHHHhHHHHHHHHHHHHH------HHHHHHHHHHHHhhhcCCcc
Confidence            777666 999999999999999874322  224   677889999999222110      01146666666666554433

>TIGR00805 oat sodium-independent organic anion transporter

Probab=93.17  E-value=0.32  Score=51.33  Aligned_cols=75  Identities=15%  Similarity=0.027  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHH-HHHHHhhhHHHHHhhhcc--chHHHHHHHHHHhhhhhh
Q 048319            3 ALLWADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSG-LVLVLQLPMQYLVDTIIS--KYWMLVFSSLAYSVGIGL   78 (348)
Q Consensus         3 ~~e~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~-~~~~~pl~gg~lAD~~lG--r~~ti~~~~~i~~~G~~l   78 (348)
                      +.-+++-++++++ ..+..|+++.+|++..+++.+...... ...+..+++|++.||+ +  .++.+.++.++.+++.++
T Consensus       337 l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~-~~~~~~~~~~~~~~~~~~~~~  415 (633)
T TIGR00805       337 LAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKF-KLNVKKAAYFAICLSTLSYLL  415 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeee-cccHHHHHHHHHHHHHHHHHH
Confidence            4567788999999 999999999999999999999887664 4567889999999995 5  567777777777776544

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=93.13  E-value=2.6  Score=41.92  Aligned_cols=157  Identities=14%  Similarity=0.124  Sum_probs=90.1

Q ss_pred             HHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCC
Q 048319           17 TMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSE   96 (348)
Q Consensus        17 ~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~   96 (348)
                      ....|+++.-|.+....+.+.+.-...=...=.+.+++--| +|-++.+.++.+.+.+=..+....+.|.          
T Consensus       229 f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r-~g~~~ll~~a~~~~~vR~~l~a~~~~~~----------  297 (400)
T PF03825_consen  229 FFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKR-FGIKWLLLLALVAYAVRWLLYAYFSDPW----------  297 (400)
T ss_pred             HHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhcCCc----------
Confidence            34556665333555555443332222112222355667777 4889999999999998877776653221          


Q ss_pred             CCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh-hhcchhhcccc--
Q 048319           97 YKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP-VAAIIPISYIK--  173 (348)
Q Consensus        97 ~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in-~~~~~~~~yi~--  173 (348)
                             .........+..+=++..|.+-+....++.++.+++..   .+-   +..|+-.++++- .++..+.+++-  
T Consensus       298 -------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~---at~---Q~l~~~~~~Glg~~iG~~igG~l~~~  364 (400)
T PF03825_consen  298 -------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELR---ATA---QGLYSALSFGLGGAIGSLIGGWLYDA  364 (400)
T ss_pred             -------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccch---HHH---HHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence                   00112223333445666666666666666666654431   123   556665555555 66666666552  


Q ss_pred             -------cchhhHHHHHHHHHHHHHHHHhcC
Q 048319          174 -------PWNLRFGVSAICTVIATLLFLSGT  197 (348)
Q Consensus       174 -------g~~~~F~i~~~~~~i~~~vf~~g~  197 (348)
                             .|...|.++++..++..++|+...
T Consensus       365 ~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~f  395 (400)
T PF03825_consen  365 FGARGMFDWSAVFLVFAVMALVILVLFVILF  395 (400)
T ss_pred             hcchhhhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence                   466778888888888888777653

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=93.08  E-value=1.1  Score=44.48  Aligned_cols=143  Identities=16%  Similarity=0.100  Sum_probs=97.1

Q ss_pred             HHHHhH-----HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccC
Q 048319           10 LAQFVM-----WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTP   84 (348)
Q Consensus        10 ~a~yg~-----~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~   84 (348)
                      |-|.|.     +-+++|+.+..|.+..+|+..++.+.+...+.-.+|.++-.| +-..|.+.+.+++..+=++...++. 
T Consensus       246 FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~-~~~~k~Laf~a~~~ill~~~~~l~~-  323 (422)
T COG0738         246 FLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSR-IKPEKYLAFYALIAILLLLAVALIG-  323 (422)
T ss_pred             HHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHhc-
Confidence            445555     347788888899999999999999999999998888888775 5777777776655443333333221 


Q ss_pred             CccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHhhh
Q 048319           85 PVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVPVA  164 (348)
Q Consensus        85 p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in~~  164 (348)
                                         +   ..-..++.++++-.+.+-|++.+..-+.+++++.     .   .+.+    .++-.+
T Consensus       324 -------------------g---~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts-----~---~s~~----l~maiv  369 (422)
T COG0738         324 -------------------G---VVALYALFLIGLFNSIMFPTIFSLALKNLGEHTS-----V---GSGL----LVMAIV  369 (422)
T ss_pred             -------------------C---hHHHHHHHHHHHHhHHHHHHHHHHHHhccCcccc-----c---ccee----eeehee
Confidence                               1   2334567789999999999999999999885543     2   2222    223366


Q ss_pred             cchhhcccc-------cchhhHH-HHHHHHHH
Q 048319          165 AIIPISYIK-------PWNLRFG-VSAICTVI  188 (348)
Q Consensus       165 ~~~~~~yi~-------g~~~~F~-i~~~~~~i  188 (348)
                      |+.+++++|       |-...+. +|..+.+.
T Consensus       370 GGAiiP~l~G~i~d~~g~~~~~~~~pllc~ly  401 (422)
T COG0738         370 GGAIIPPLQGVIADMFGIQLTFLIVPLLCYLY  401 (422)
T ss_pred             cchHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            777777777       4444444 56555543

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=92.77  E-value=1.6  Score=44.56  Aligned_cols=124  Identities=11%  Similarity=0.027  Sum_probs=74.9

Q ss_pred             HHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHH
Q 048319           52 QYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEF  131 (348)
Q Consensus        52 g~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~  131 (348)
                      +.+.|| ++..+.+.+|.++..+|.+++.....-   +  .++        ...+...+.....+.++|.+.+.|...++
T Consensus       341 ~~l~~r-~~~~~~~~~G~~l~~l~f~~l~~~~~~---~--~~~--------~~vs~~~~~~~~~l~~~ge~~~~p~g~s~  406 (500)
T PRK09584        341 NKMGDR-LPMPHKFAIGMVLCSGAFLVLPLGAKF---A--NDA--------GIVSVNWLIASYGLQSIGELMISGLGLAM  406 (500)
T ss_pred             HHhCcC-CCcHHHHHHHHHHHHHHHHHHHHHHHh---c--CCC--------CccCHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            344555 466788899999999998887765320   0  011        11234567778889999999999999999


Q ss_pred             HHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhc-----c------cc--cchhhHHHHHHHHHHHHHHHHh
Q 048319          132 AEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPIS-----Y------IK--PWNLRFGVSAICTVIATLLFLS  195 (348)
Q Consensus       132 ~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~-----y------i~--g~~~~F~i~~~~~~i~~~vf~~  195 (348)
                      ..+.-++    +  .|   .+....|+++.-   .++..+..     -      ..  ++...|..-++..++..++++.
T Consensus       407 ~~~~aP~----~--~r---g~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~  477 (500)
T PRK09584        407 VAQLVPQ----R--LM---GFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL  477 (500)
T ss_pred             HHHhCcH----H--HH---HHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            8866443    2  23   556665554332   33322221     1      11  4778888766665544444444


Q ss_pred             cCc
Q 048319          196 GTC  198 (348)
Q Consensus       196 g~~  198 (348)
                      -+|
T Consensus       478 ~~~  480 (500)
T PRK09584        478 TAP  480 (500)
T ss_pred             HHH
Confidence            333

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=92.71  E-value=0.92  Score=35.08  Aligned_cols=71  Identities=13%  Similarity=0.000  Sum_probs=50.7

Q ss_pred             HHHHHHhHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcc
Q 048319            8 DCLAQFVMWTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMS   82 (348)
Q Consensus         8 Er~a~yg~~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s   82 (348)
                      -||+|=   .+...+.++.+++.++++.+.+..-..-.+..+..+++.++ ..+++.+..+.++..+....+.++
T Consensus         7 gRFayT---plLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ma~~   77 (85)
T PF06779_consen    7 GRFAYT---PLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRH-SRPRRLLRAGLLLTVLSTAAMALT   77 (85)
T ss_pred             HHHHHH---hHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHH
Confidence            477775   45556678999999999988887555555555566666666 366777888888877777776664

Note that many members are hypothetical proteins.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=92.68  E-value=1.5  Score=44.73  Aligned_cols=56  Identities=18%  Similarity=0.185  Sum_probs=40.4

Q ss_pred             hCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhccc
Q 048319           26 WKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMST   83 (348)
Q Consensus        26 l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~   83 (348)
                      .|.+... ............+..+++.++-||+ |||+.++.|...+.++.+++...-
T Consensus       325 ~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~~m~~~~~~~~~~~  380 (513)
T KOG0254|consen  325 AGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAAGMSICLVILAVVG  380 (513)
T ss_pred             cCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHHHHHHHHHHHHHHH
Confidence            4454332 3333333445566667779999995 999999999999999999888653

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=91.65  E-value=0.0072  Score=57.29  Aligned_cols=90  Identities=11%  Similarity=-0.012  Sum_probs=71.3

Q ss_pred             HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCC
Q 048319           16 WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCS   95 (348)
Q Consensus        16 ~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~   95 (348)
                      +-|.+|+...++...++-+.+++.|+-=...+|.+|||+-||.+|-|+.-.+-+.+..+|+++.+.....          
T Consensus        64 ~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~----------  133 (459)
T KOG4686|consen   64 GALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGIS----------  133 (459)
T ss_pred             hhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHH----------
Confidence            5577888888888888999999999888889999999999999999988888888889999998865320          


Q ss_pred             CCCCcccccchhHHHHHHHHHHHHhcccC
Q 048319           96 EYKPECIVKGHKILFYAALGLLAFASSSC  124 (348)
Q Consensus        96 ~~~~~c~~~~~~~~~~~~L~liaiG~G~~  124 (348)
                               ...+....|-++.++|.-..
T Consensus       134 ---------~aFw~M~~GRF~FGIGgESl  153 (459)
T KOG4686|consen  134 ---------HAFWTMLAGRFLFGIGGESL  153 (459)
T ss_pred             ---------HHHHHHHhhheeeccCchhh
Confidence                     12455666777776665443

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=91.23  E-value=3  Score=42.40  Aligned_cols=157  Identities=18%  Similarity=0.123  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHhH-H---HHHHHhhhhhCCchHHHHHH-HHHH----HHHHHHHhhhHHHHHhhhccchHHHHHHHHHHh
Q 048319            3 ALLWADCLAQFVM-W---TMMEYLTEVWKISVVHAAGI-VNIF----SGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYS   73 (348)
Q Consensus         3 ~~e~~Er~a~yg~-~---~L~~Yl~~~l~~~~~~A~~i-~~~~----~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~   73 (348)
                      .+.+++.|+++-. .   +...+.....+.+....+.. .+..    .....+...+-|.++|+| ||+..+.+..+...
T Consensus        25 ~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~~~  103 (463)
T KOG2816|consen   25 PLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPLFGTI  103 (463)
T ss_pred             HHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHHHHHH
Confidence            3567777777644 3   33344433334333333222 2222    235566666778999996 99999999988888


Q ss_pred             hhhhhhhcccCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhH
Q 048319           74 VGIGLLTMSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREF  153 (348)
Q Consensus        74 ~G~~ll~~s~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~  153 (348)
                      ++-+.+.+..                        ..+++   +.+ ..|++-...+.--+++-|....++|.      ..
T Consensus       104 l~~~~~~~~~------------------------~~~~~---~~~-l~g~~~~~~s~~~a~vadis~~~~R~------~~  149 (463)
T KOG2816|consen  104 LPALCLLFQG------------------------YWFFL---LLG-LSGGFSAIFSVGFAYVADISSEEERS------SS  149 (463)
T ss_pred             HhHHHHHHHH------------------------HHHhh---hcc-cccchhhhhhhhhhheeeccchhHHH------HH
Confidence            8777666531                        11111   222 22333333333334444444443322      22


Q ss_pred             HHHHHHHHh---hhcchhhcccc---cchhhHHHHHHHHHHHHHHHH
Q 048319          154 FKLLLFMVP---VAAIIPISYIK---PWNLRFGVSAICTVIATLLFL  194 (348)
Q Consensus       154 f~~~y~~in---~~~~~~~~yi~---g~~~~F~i~~~~~~i~~~vf~  194 (348)
                      +..-.-+.-   .+++....++-   |+...|.++++..+++.+--+
T Consensus       150 ~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~  196 (463)
T KOG2816|consen  150 IGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYML  196 (463)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh
Confidence            222111111   44444444443   888999999888887765433

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=91.23  E-value=0.15  Score=48.23  Aligned_cols=166  Identities=13%  Similarity=0.056  Sum_probs=89.9

Q ss_pred             HhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCCc
Q 048319           21 YLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPE  100 (348)
Q Consensus        21 Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~~  100 (348)
                      |+....|+...+-+.+.-+=.|-+.++-.+.|-++|+ .||+|+.+.-++.|.+..+    +-.                
T Consensus        62 yLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDk-qGRKracvtycitYiLsCi----TKh----------------  120 (454)
T KOG4332|consen   62 YLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCITYILSCI----TKH----------------  120 (454)
T ss_pred             eeehhcCccCCccceeeecccchHHHHHHHHHHHHhh-hccccceeeehHHHHHHHH----hhc----------------
Confidence            4445678888888777766566677777788899999 6999998888888776532    221                


Q ss_pred             ccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchh---hhhhhhhhhhHHHHHHHHHh--------hhcchhh
Q 048319          101 CIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINE---HISLSLIQREFFKLLLFMVP--------VAAIIPI  169 (348)
Q Consensus       101 c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~---e~~~~~~~~~~f~~~y~~in--------~~~~~~~  169 (348)
                         +.+.-++.+|-.+=++.+...   -++|=+-...|+..+   |.+=.   ..-|+---+..|        +++-.++
T Consensus       121 ---SpqYkVLmVGR~LGGiaTsLL---FSaFEsWliaEHnekr~FeqqWl---s~TFskA~ffgNglvAiiaGlfgn~lv  191 (454)
T KOG4332|consen  121 ---SPQYKVLMVGRVLGGIATSLL---FSAFESWLIAEHNEKRGFEQQWL---SVTFSKAVFFGNGLVAIIAGLFGNLLV  191 (454)
T ss_pred             ---CCceEEEeehhhhhhHHHHHH---HHHHHHHHHHHhhhccCChHhhh---hHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence               112333444444433333322   123333333333211   10001   333444344455        2333334


Q ss_pred             cccc-cchhhHHHHHHHHHHHHHHHHhcCcccccCCCCCCchhHHHHH
Q 048319          170 SYIK-PWNLRFGVSAICTVIATLLFLSGTCTYENKEPEGSPLTSVFRV  216 (348)
Q Consensus       170 ~yi~-g~~~~F~i~~~~~~i~~~vf~~g~~~y~~~~p~gs~l~~~~~V  216 (348)
                      .++. |-...|--+++..+++..+.+.....=..+|.+...+.+-++.
T Consensus       192 d~~slGPVAPFdAAacfLaigmAvil~~W~ENygdps~~kdlltqf~g  239 (454)
T KOG4332|consen  192 DTFSLGPVAPFDAAACFLAIGMAVILSSWSENYGDPSENKDLLTQFKG  239 (454)
T ss_pred             HHhccCCCCchHHHHHHHHHHHHHHHhhhhhccCChhhhHHHHHHhhH
Confidence            4444 7778888888888888776664333222233333445554443

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=90.33  E-value=1.6  Score=43.31  Aligned_cols=34  Identities=18%  Similarity=0.184  Sum_probs=28.8

Q ss_pred             HhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhc
Q 048319           47 LQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTM   81 (348)
Q Consensus        47 ~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~   81 (348)
                      .-++.+++-|+ +||++|+....++..+-++++..
T Consensus       397 GlLIt~~iver-lGRKkTMal~l~~f~iflfll~~  430 (528)
T KOG0253|consen  397 GLLITGVIVER-LGRKKTMALSLILFGIFLFLLTT  430 (528)
T ss_pred             chhHHHHHHHH-hcchhHHHHHHHHHHHHHHHHHH
Confidence            44789999999 89999999999988877766654

>TIGR00788 fbt folate/biopterin transporter

Probab=89.75  E-value=1.6  Score=44.16  Aligned_cols=126  Identities=7%  Similarity=-0.099  Sum_probs=76.4

Q ss_pred             hhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccC-CccCCCCCCCCCCCCccc
Q 048319           24 EVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTP-PVLAGFVGTCSEYKPECI  102 (348)
Q Consensus        24 ~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~-p~~~~~~~~c~~~~~~c~  102 (348)
                      +.+|+++...+.+.........+...+.+.+.++ +|.++++.++.+++.++.....+... .....   ..        
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~-~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~---gi--------  348 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKT-FPYRLLFGVTTLLYTLSSLFDLILVKRWNLAF---GI--------  348 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHhCceeeeecccccc---CC--------
Confidence            4689999999988888776666666666666655 68999999999999988766432111 10000   00        


Q ss_pred             ccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhccc
Q 048319          103 VKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYI  172 (348)
Q Consensus       103 ~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi  172 (348)
                        ...........+..++.|..-.....+..+.-+++.      +   ...|..+....|   .++....+++
T Consensus       349 --~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------e---gt~~al~~s~~~lg~~v~~~~gg~l  410 (468)
T TIGR00788       349 --SDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------E---SSVFALLASILHLGSSVSGFLGVLL  410 (468)
T ss_pred             --CCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------e---ehHHHHHHHHHHHHHHHHHHHHHHH
Confidence              011122233445566666655556677776555432      2   567777777667   5555544444

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=89.08  E-value=0.013  Score=58.22  Aligned_cols=57  Identities=18%  Similarity=0.102  Sum_probs=38.4

Q ss_pred             HhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhh
Q 048319           21 YLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLT   80 (348)
Q Consensus        21 Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~   80 (348)
                      ++.+..+.+..  ............+..+++.++.|+ +|||+.++++.++..+..+.+.
T Consensus       278 ~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~GRr~~~i~~~~~~~~~~~~~~  334 (451)
T PF00083_consen  278 SIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDR-FGRRKLLIIGLLLMAICSLILG  334 (451)
T ss_pred             ccccccccccc--cccccccccccccccccccccccc-cccccccccccccccccccccc
Confidence            33445566665  111222233455677778899999 6999999999988888777765

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=87.93  E-value=9.4  Score=38.06  Aligned_cols=162  Identities=10%  Similarity=-0.005  Sum_probs=82.4

Q ss_pred             hhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhh---ccchHH--HHHHHHHHhhhhhhhhcccC--Cc-cCCCCCCC
Q 048319           23 TEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTI---ISKYWM--LVFSSLAYSVGIGLLTMSTP--PV-LAGFVGTC   94 (348)
Q Consensus        23 ~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~---lGr~~t--i~~~~~i~~~G~~ll~~s~~--p~-~~~~~~~c   94 (348)
                      ..+|+.+..-.+..+..-.....+= ..-|+.+|++   +|.|||  |+.|..+...|..+......  .. ..+  .  
T Consensus         7 IvEL~vpA~lv~~lval~~~~ap~R-~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~--~--   81 (403)
T PF03209_consen    7 IVELGVPAWLVALLVALHYLVAPLR-VWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQ--S--   81 (403)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHH-HHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccc--c--
Confidence            3467777766666666655555443 3456889985   455665  66788888877666554433  11 000  0  


Q ss_pred             CCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh-hhcchhhc-cc
Q 048319           95 SEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP-VAAIIPIS-YI  172 (348)
Q Consensus        95 ~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in-~~~~~~~~-yi  172 (348)
                      +.     +.........++..++++|.+.......++.+|.-+|++    |.|   --..-|.-+..- .++.++.+ ++
T Consensus        82 ~~-----~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~----R~~---~v~ivw~Mli~G~iv~ai~~g~lL  149 (403)
T PF03209_consen   82 SG-----PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER----RPR---VVAIVWVMLIVGIIVSAIVFGRLL  149 (403)
T ss_pred             cc-----ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh----hhh---hHHHHHHHHHHHHHHHHHHHHHHc
Confidence            00     011112233444555666666666667777776555432    223   333444444333 44444444 23


Q ss_pred             cc------chhhHHHHHHHHHHHHHHHHhcCcccc
Q 048319          173 KP------WNLRFGVSAICTVIATLLFLSGTCTYE  201 (348)
Q Consensus       173 ~g------~~~~F~i~~~~~~i~~~vf~~g~~~y~  201 (348)
                      ..      ++..-.++.+.+++.++-.+--.+++.
T Consensus       150 ~~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~  184 (403)
T PF03209_consen  150 DPFSPERLIQVIQGVALIALLLNLIALWGQEPRRS  184 (403)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCc
Confidence            32      222333455555555554444444444

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR01272 gluP glucose/galactose transporter

Probab=87.16  E-value=1.5  Score=41.78  Aligned_cols=36  Identities=22%  Similarity=0.157  Sum_probs=31.3

Q ss_pred             chhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccc
Q 048319          105 GHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAI  140 (348)
Q Consensus       105 ~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~  140 (348)
                      .+...+.+++.+++.|.+...+..++++++.-++++
T Consensus         8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~   43 (310)
T TIGR01272         8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET   43 (310)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch
Confidence            357889999999999999999999999998776543

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=85.69  E-value=2  Score=44.31  Aligned_cols=64  Identities=16%  Similarity=0.151  Sum_probs=49.8

Q ss_pred             HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhc
Q 048319           16 WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTM   81 (348)
Q Consensus        16 ~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~   81 (348)
                      ..|.+|.. .||++.++.+.++..--....+.+.+.|++|||| =++|-+++|+.+..++..++..
T Consensus        32 pll~vy~k-QLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~-r~~r~lllgsl~~~v~a~fll~   95 (618)
T KOG3762|consen   32 PLLAVYFK-QLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRY-RKRRPLLLGSLLLSVTATFLLV   95 (618)
T ss_pred             hHHHHHHH-HcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHH-HhcCchhHHHHHHHHHHHHhee
Confidence            45566664 6999999999999999999999999999999997 5666666666655555544444

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=84.42  E-value=28  Score=35.46  Aligned_cols=39  Identities=15%  Similarity=0.036  Sum_probs=22.0

Q ss_pred             HHHHHHhhhHHHHHhhhccchHHHHH-HHHHHhhhhhhhhc
Q 048319           42 GLVLVLQLPMQYLVDTIISKYWMLVF-SSLAYSVGIGLLTM   81 (348)
Q Consensus        42 ~~~~~~pl~gg~lAD~~lGr~~ti~~-~~~i~~~G~~ll~~   81 (348)
                      ...-++.++-|-+||.. |+||-++. +..+..+...++..
T Consensus        81 l~~all~P~lGa~aD~~-~~Rk~~l~~~~~~~~~~~~~l~~  120 (477)
T PF11700_consen   81 LLQALLAPFLGAIADYG-GRRKRFLLIFTLLGVLATALLWF  120 (477)
T ss_pred             HHHHHHHHHHHHHHccc-ccchHHHHHHHHHHHHHHHHHHH
Confidence            33444444556789985 66665555 44555555555554

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=80.94  E-value=3.4  Score=41.81  Aligned_cols=145  Identities=14%  Similarity=0.081  Sum_probs=92.9

Q ss_pred             HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhh---ccchHHHH-HHHHHHhhhhhhhhcccC--CccCC
Q 048319           16 WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTI---ISKYWMLV-FSSLAYSVGIGLLTMSTP--PVLAG   89 (348)
Q Consensus        16 ~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~---lGr~~ti~-~~~~i~~~G~~ll~~s~~--p~~~~   89 (348)
                      +.+..|++ .+|.+..-.+.+-..--....+...+-|..+||.   +||||-.+ .+++...++++++..++-  +.+-+
T Consensus        53 sy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd  131 (498)
T KOG0637|consen   53 SYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGD  131 (498)
T ss_pred             ccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcC
Confidence            44555665 4788877776666555555666667778999986   78877654 566777777776655432  22211


Q ss_pred             CCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHhhhcchhh
Q 048319           90 FVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVPVAAIIPI  169 (348)
Q Consensus        90 ~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in~~~~~~~  169 (348)
                            + ...|.......++.+|..++=+.+-..+...-++.+|...+++.++|  -   .++|..|--..|.++...-
T Consensus       132 ------~-~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~--A---ns~f~~f~avGnvLGY~~g  199 (498)
T KOG0637|consen  132 ------N-ERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTR--A---NSVFSFFMAVGNVLGYALG  199 (498)
T ss_pred             ------C-cccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhc--c---chhHHHHHHhcceeeeecc
Confidence                  1 11111234466788888888888888888888999999887764332  2   5666655555556665555


Q ss_pred             cccc
Q 048319          170 SYIK  173 (348)
Q Consensus       170 ~yi~  173 (348)
                      +|..
T Consensus       200 ~y~~  203 (498)
T KOG0637|consen  200 SYLG  203 (498)
T ss_pred             cccC
Confidence            5654

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=80.68  E-value=13  Score=31.93  Aligned_cols=76  Identities=18%  Similarity=0.284  Sum_probs=49.9

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCCcccccchhHH
Q 048319           30 VVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECIVKGHKIL  109 (348)
Q Consensus        30 ~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~~c~~~~~~~~  109 (348)
                      ....+.++..+...+.+.    ..+-++ +|.|+++++|.+.|.+=.....       .|                +...
T Consensus        40 ~~slai~Y~~~~~s~l~~----P~iv~~-lg~K~sm~lg~~~y~~y~~~~~-------~~----------------~~~~   91 (156)
T PF05978_consen   40 YYSLAILYGSFAISCLFA----PSIVNK-LGPKWSMILGSLGYAIYIASFF-------YP----------------NSYT   91 (156)
T ss_pred             HHHHHHHHHHHHHHHHhH----HHHHHH-HhhHHHHHHHHHHHHHHHHHHH-------hh----------------hHHH
Confidence            334444445554444444    455555 7999999999988875333221       11                3467


Q ss_pred             HHHHHHHHHHhcccCCcchhHHHH
Q 048319          110 FYAALGLLAFASSSCSVESTEFAE  133 (348)
Q Consensus       110 ~~~~L~liaiG~G~~k~~v~~~~a  133 (348)
                      ++.+=.+.++|.+.+......+..
T Consensus        92 l~~~s~l~G~~~a~lW~aqg~ylt  115 (156)
T PF05978_consen   92 LYPASALLGFGAALLWTAQGTYLT  115 (156)
T ss_pred             HHHHHHHHhhhhHHhhHhhhHHHH
Confidence            788888999999998887776665

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	348
2xut_A	524	Proton/peptide symporter family protein; transport	2e-17
2xut_A	524	Proton/peptide symporter family protein; transport	4e-04

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score = 82.4 bits (204), Expect = 2e-17
 Identities = 20/155 (12%), Positives = 47/155 (30%), Gaps = 7/155 (4%)

Query: 175 WNLRFGVSAICTVIATLLFLSGTCTYENKEPEGSPLTSVFRVFVASTTKLFYRLPSDASE 234
             + FG+  +   +AT+ F  G   Y +  PE         V  ++          +   
Sbjct: 177 AAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKV-EGKGNIGL 235

Query: 235 LYEGNDTDDSFSDSDDSSFVQPTCGLGCLEKAAVILP---NGTIEQQETNRWRLCSVTEV 291
           +          S +     +     +  L  A V++          Q     +      V
Sbjct: 236 VLA---LIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAV 292

Query: 292 EETKRLLRMIPICLTFIIPGVVSSIGNTYFVEQAD 326
           +  + +LR++ +         +     + ++ QA+
Sbjct: 293 DGVRSVLRILVLFALVTPFWSLFDQKASTWILQAN 327

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 6/78 (7%)

Query: 21  YLT------EVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSV 74
           +L          ++    A  + + F   V    L   ++ D    KY  +++ SL Y V
Sbjct: 38  FLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCV 97

Query: 75  GIGLLTMSTPPVLAGFVG 92
           G   L +    V   + G
Sbjct: 98  GHAFLAIFEHSVQGFYTG 115

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	348
2xut_A	524	Proton/peptide symporter family protein; transport	99.8
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.7
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.14
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.03
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.98
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.77
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.7
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.4
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.33
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.2
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.06
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.03
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	97.7
2xut_A	524	Proton/peptide symporter family protein; transport	95.82

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.80  E-value=6.6e-19  Score=175.71  Aligned_cols=295  Identities=16%  Similarity=0.174  Sum_probs=191.7

Q ss_pred             hHHHHHHHHHHHhH-HHHHHHhhhhhC------CchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhh
Q 048319            2 AALLWADCLAQFVM-WTMMEYLTEVWK------ISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSV   74 (348)
Q Consensus         2 ~~~e~~Er~a~yg~-~~L~~Yl~~~l~------~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~   74 (348)
                      .+.++++++++|++ ..+..|+++.+|      ++..+++.+.+.+.....+.++++|+++||++||||++.++.++..+
T Consensus        18 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~   97 (524)
T 2xut_A           18 IASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCV   97 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            36789999999999 999999999999      99999999999999999999999999999966999999999999999


Q ss_pred             hhhhhhcccCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHH
Q 048319           75 GIGLLTMSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFF  154 (348)
Q Consensus        75 G~~ll~~s~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f  154 (348)
                      +.+++.++.                     .+...++++..+.++|.|...|+..++.+|.+++++   |.+.   .+.|
T Consensus        98 ~~~~~~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---r~~~---~~~~  150 (524)
T 2xut_A           98 GHAFLAIFE---------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN---KSLA---QKAF  150 (524)
T ss_dssp             HHHHHHHTS---------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT---TTHH---HHHH
T ss_pred             HHHHHHHhc---------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc---hHHH---HHHH
Confidence            998877652                     024677888899999999999999999999997543   2224   5678


Q ss_pred             HHHHHHHh---hhcchhhcccc---cchhhHHHHHHHHHHHHHHHHhcCcccccCCCCCCchhHHHHHHHHHHhhccCCC
Q 048319          155 KLLLFMVP---VAAIIPISYIK---PWNLRFGVSAICTVIATLLFLSGTCTYENKEPEGSPLTSVFRVFVASTTKLFYRL  228 (348)
Q Consensus       155 ~~~y~~in---~~~~~~~~yi~---g~~~~F~i~~~~~~i~~~vf~~g~~~y~~~~p~gs~l~~~~~V~~~a~~~~~~~~  228 (348)
                      ++++.+.|   .+++.+.+++.   ||++.|.+.++..+++.++++..++.++.++|++++..+..+.+..+.|+++.+.
T Consensus       151 ~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (524)
T 2xut_A          151 DMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGK  230 (524)
T ss_dssp             HHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhccc
Confidence            88888888   66776666654   9999999999988888887777766666555555554444444444444432110


Q ss_pred             CCCCcccccCCCCCCCCCCCCCCccccCCCCCchhhhhhhhCCCCCcccccCCcc-------cccCcchhHHHHHhhhhh
Q 048319          229 PSDASELYEGNDTDDSFSDSDDSSFVQPTCGLGCLEKAAVILPNGTIEQQETNRW-------RLCSVTEVEETKRLLRMI  301 (348)
Q Consensus       229 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ld~a~~~~~~~~~~~~~~~~w-------~~~~~~~Vee~k~~l~~l  301 (348)
                      + +.....+.....      .....+.+.+....+..+....-- ..+.+...||       +.+++.++++.|++++.+
T Consensus       231 ~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (524)
T 2xut_A          231 G-NIGLVLALIGGV------SAAYALVNIPTLGIVAGLCCAMVL-VMGFVGAGASLQLERARKSHPDAAVDGVRSVLRIL  302 (524)
T ss_dssp             H-HHHHHHHHHHHH------HHHHTGGGTTTTCSSHHHHHHHHH-HHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHH
T ss_pred             C-ccchhhhhhhhh------hhhhhhcccchhhhhhhhhhhhhh-hhcccccchhhHHhhhhccccHhHHHHHHHHHHHH
Confidence            0 000000000000      000000000000000000000000 0000012233       223445567788999999


Q ss_pred             hHHHHHHHHHHhhcccchHHHHHHHHhccC
Q 048319          302 PICLTFIIPGVVSSIGNTYFVEQADLLNKK  331 (348)
Q Consensus       302 pif~~~ii~~~~~~Q~~t~~v~Qa~~md~~  331 (348)
                      ++++...+++..+.|..+.+..|+..++.+
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (524)
T 2xut_A          303 VLFALVTPFWSLFDQKASTWILQANDMVKP  332 (524)
T ss_dssp             HHHTTSHHHHTTTSSTTTHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHHhccchhhHHhHHhcCCC
Confidence            999999999999999999998888877764

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.70  E-value=6e-16  Score=152.82  Aligned_cols=171  Identities=13%  Similarity=0.177  Sum_probs=146.1

Q ss_pred             hHHHHHHHHHHHhH-HHHHHHhhhh-----hCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhh
Q 048319            2 AALLWADCLAQFVM-WTMMEYLTEV-----WKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVG   75 (348)
Q Consensus         2 ~~~e~~Er~a~yg~-~~L~~Yl~~~-----l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G   75 (348)
                      .+..++++++||++ ..+..|+++.     +|++..+++.+.+.+.....+..+++|+++||++|||+++.++.++..+|
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~   98 (491)
T 4aps_A           19 FMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLG   98 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence            35789999999999 9999999998     99999999999999999999999999999999779999999999999999


Q ss_pred             hhhhhcccCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHH
Q 048319           76 IGLLTMSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFK  155 (348)
Q Consensus        76 ~~ll~~s~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~  155 (348)
                      .+++..+.                      +...++++..+.++|.|...|...++.+|.+++++    +.|   ...++
T Consensus        99 ~~~~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~----~~r---~~~~~  149 (491)
T 4aps_A           99 HIVLALPF----------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD----RRR---DAGFS  149 (491)
T ss_dssp             HHHHHSCC----------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT----THH---HHHHH
T ss_pred             HHHHHHhh----------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc----ccc---eeeeh
Confidence            98887642                      23567888899999999999999999999998654    234   66888


Q ss_pred             HHHHHHh---hhcchhhcccc---cchhhHHHHHHHHHHHHHHHHhcCcccc
Q 048319          156 LLLFMVP---VAAIIPISYIK---PWNLRFGVSAICTVIATLLFLSGTCTYE  201 (348)
Q Consensus       156 ~~y~~in---~~~~~~~~yi~---g~~~~F~i~~~~~~i~~~vf~~g~~~y~  201 (348)
                      +++.+.|   .+++.+.+++.   ||++.|.+.++..+++.++++..++++.
T Consensus       150 ~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~  201 (491)
T 4aps_A          150 IFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTL  201 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence            8888888   66777766664   9999999998888888777766555443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.14  E-value=1e-09  Score=105.97  Aligned_cols=160  Identities=13%  Similarity=0.135  Sum_probs=120.1

Q ss_pred             HHHHHHHHhHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCC
Q 048319            6 WADCLAQFVMWTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPP   85 (348)
Q Consensus         6 ~~Er~a~yg~~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p   85 (348)
                      +..-+.+..+..+..++.+.+|.+..+.+.+.+.+.....+..+++|+++|| +||||+++++.++..+|.++....+. 
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~-  113 (438)
T 3o7q_A           36 FLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLFLYALGAALFWPAAE-  113 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchHHHHHHHHHHHHHHHHHHhccc-
Confidence            3344444333556777888999999999999999999999999999999999 59999999999999999988843211 


Q ss_pred             ccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---
Q 048319           86 VLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---  162 (348)
Q Consensus        86 ~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---  162 (348)
                                        ..+...++++..+.++|.|...|...++.+|.+++++      |   .+.++++..+.+   
T Consensus       114 ------------------~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r---~~~~~~~~~~~~~g~  166 (438)
T 3o7q_A          114 ------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------G---HFRLNLAQTFNSFGA  166 (438)
T ss_dssp             ------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------H---HHHHHHHHHHHHHHH
T ss_pred             ------------------cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------H---HHHHHHHHHHHHHHH
Confidence                              0135778889999999999999999999998886542      3   445677666666   


Q ss_pred             hhcchhhccc--c--c-------------------------chhhHHHHHHHHHHHHHHHH
Q 048319          163 VAAIIPISYI--K--P-------------------------WNLRFGVSAICTVIATLLFL  194 (348)
Q Consensus       163 ~~~~~~~~yi--~--g-------------------------~~~~F~i~~~~~~i~~~vf~  194 (348)
                      .+++.+..++  +  +                         |++.|.+.++..++..++++
T Consensus       167 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  227 (438)
T 3o7q_A          167 IIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM  227 (438)
T ss_dssp             HHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            5555544433  2  2                         99999776665555444443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.03  E-value=1.9e-09  Score=104.24  Aligned_cols=154  Identities=10%  Similarity=-0.000  Sum_probs=118.5

Q ss_pred             HHHHHHhHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhc----cc
Q 048319            8 DCLAQFVMWTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTM----ST   83 (348)
Q Consensus         8 Er~a~yg~~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~----s~   83 (348)
                      ..+..+.+..+..++.+++ .+..+.+.+.+.+.....+..+++|+++||+ |||++++++.++..+|.+++.+    +.
T Consensus        40 ~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~  117 (451)
T 1pw4_A           40 YYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWATS  117 (451)
T ss_dssp             HHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhccc
Confidence            3333333333344555567 9999999999999999999999999999995 9999999999999999988876    31


Q ss_pred             CCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh-
Q 048319           84 PPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP-  162 (348)
Q Consensus        84 ~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in-  162 (348)
                                            +...++++..+.++|.|...|...++.+|.+++++      |   .+.+.++..+.+ 
T Consensus       118 ----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r---~~~~~~~~~~~~~  166 (451)
T 1pw4_A          118 ----------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------R---GGIVSVWNCAHNV  166 (451)
T ss_dssp             ----------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------H---HHHHHHHHHHHHH
T ss_pred             ----------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------h---hHHHHHHHHHHHH
Confidence                                  23567788899999999999999999999886432      3   567777777766 


Q ss_pred             --hhcchhhccc-c--c-chhhHHHHHHHHHHHHHHHH
Q 048319          163 --VAAIIPISYI-K--P-WNLRFGVSAICTVIATLLFL  194 (348)
Q Consensus       163 --~~~~~~~~yi-~--g-~~~~F~i~~~~~~i~~~vf~  194 (348)
                        .+++.+.+++ +  | |++.|.+.++..++..++.+
T Consensus       167 g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~  204 (451)
T 1pw4_A          167 GGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAF  204 (451)
T ss_dssp             HHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence              6666665553 3  7 99999998877666554443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.98  E-value=1.6e-09  Score=102.70  Aligned_cols=155  Identities=10%  Similarity=0.069  Sum_probs=121.2

Q ss_pred             HHHHHHHHHhHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccC
Q 048319            5 LWADCLAQFVMWTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTP   84 (348)
Q Consensus         5 e~~Er~a~yg~~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~   84 (348)
                      .+...++..........+.+++|.+..+.+.+.+.+.....+..+++|+++|| +||||.+.++.++..++.+++..+. 
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~-   86 (375)
T 2gfp_A            9 VAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR-VGRRPVILVGMSIFMLATLVAVTTS-   86 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTT-SCCCCCCHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHHHHhc-
Confidence            34444444434333444567899999999999999999999999999999999 5999999999999999998877641 


Q ss_pred             CccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh--
Q 048319           85 PVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP--  162 (348)
Q Consensus        85 p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in--  162 (348)
                                           +...++++..+.++|.|...|...++..|.+++++      |   .+.+.++....+  
T Consensus        87 ---------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~~~~~g  136 (375)
T 2gfp_A           87 ---------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------L---RHANSLLNMGILVS  136 (375)
T ss_dssp             ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------C---CSHHHHHHHHHHHH
T ss_pred             ---------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------H---HHHHHHHHHHHHHH
Confidence                                 35677888889999999999999999999887543      3   556777666666  


Q ss_pred             -hhcchhhcccc---cchhhHHHHHHHHHHHHH
Q 048319          163 -VAAIIPISYIK---PWNLRFGVSAICTVIATL  191 (348)
Q Consensus       163 -~~~~~~~~yi~---g~~~~F~i~~~~~~i~~~  191 (348)
                       .+++.+.+++.   ||+..|.+.++..++..+
T Consensus       137 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  169 (375)
T 2gfp_A          137 PLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF  169 (375)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence             66666666554   999999988877766554

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.77  E-value=1.4e-07  Score=90.94  Aligned_cols=164  Identities=13%  Similarity=0.034  Sum_probs=122.4

Q ss_pred             HHHHHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhc-cchHHHHHHHHHHh-hhhhhh
Q 048319            3 ALLWADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTII-SKYWMLVFSSLAYS-VGIGLL   79 (348)
Q Consensus         3 ~~e~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~l-Gr~~ti~~~~~i~~-~G~~ll   79 (348)
                      +..++-.++++++ ..+..|+++.+|++..+++.+...+.....+..+++|+++||+. ||++.+.++..+.. ++.+++
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (451)
T 1pw4_A          259 IANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVY  338 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence            3455667788888 88889999889999999999999999999999999999999932 99999888887776 776666


Q ss_pred             hcccCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHH
Q 048319           80 TMSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLF  159 (348)
Q Consensus        80 ~~s~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~  159 (348)
                      ....                    ..+...+.+.+.+.+++.++.-+...++..|.+++++      +   .+.+.++..
T Consensus       339 ~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~---g~~~~~~~~  389 (451)
T 1pw4_A          339 WMNP--------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------A---GTAAGFTGL  389 (451)
T ss_dssp             TSCC--------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------H---HHHHHHHHH
T ss_pred             HHhc--------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------h---hhHHHHHHH
Confidence            5431                    0124556677778888888888888888888776432      2   445555544


Q ss_pred             HHh----hhcchhhcccc---cchhhHHHHHHHHHHHHHHHHh
Q 048319          160 MVP----VAAIIPISYIK---PWNLRFGVSAICTVIATLLFLS  195 (348)
Q Consensus       160 ~in----~~~~~~~~yi~---g~~~~F~i~~~~~~i~~~vf~~  195 (348)
                      ..+    .+++.+.+++.   ||...|.+.++..+++.++++.
T Consensus       390 ~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  432 (451)
T 1pw4_A          390 FGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  432 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            444    45555555553   8999999988888877766554

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.70  E-value=2.1e-07  Score=89.54  Aligned_cols=158  Identities=11%  Similarity=0.011  Sum_probs=114.4

Q ss_pred             HHHHHHHHHhH-HHHHHH-hhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcc
Q 048319            5 LWADCLAQFVM-WTMMEY-LTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMS   82 (348)
Q Consensus         5 e~~Er~a~yg~-~~L~~Y-l~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s   82 (348)
                      -++--.+++++ ..+..| +++.+|++..+++.....+.....+..+++|+++|| +||++.+.++.++..++.+++...
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~  345 (438)
T 3o7q_A          267 QFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAMALCLISAFA  345 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHc
Confidence            34555667777 888889 888889999999999999999999999999999999 599999999999998888776653


Q ss_pred             cCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh
Q 048319           83 TPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP  162 (348)
Q Consensus        83 ~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in  162 (348)
                      .                      .. .....+.+++++.+..-|...++..|.++++     +.+   ...+........
T Consensus       346 ~----------------------~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~g~  394 (438)
T 3o7q_A          346 G----------------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-----TKY---GSSFIVMTIIGG  394 (438)
T ss_dssp             C----------------------HH-HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-----HHH---HHHHHHHTTHHH
T ss_pred             C----------------------Cc-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-----ccc---hhhHHHHHHHHH
Confidence            1                      11 2344557788888888888888888777643     112   222222111222


Q ss_pred             hhcchhhcccc---c-chhhHHHHHHHHHHHHHHHH
Q 048319          163 VAAIIPISYIK---P-WNLRFGVSAICTVIATLLFL  194 (348)
Q Consensus       163 ~~~~~~~~yi~---g-~~~~F~i~~~~~~i~~~vf~  194 (348)
                      .+++.+.+++.   | |+.+|.+++++.++..+..+
T Consensus       395 ~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  430 (438)
T 3o7q_A          395 GIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFAR  430 (438)
T ss_dssp             HHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            56666666654   7 99999988777665554433

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.40  E-value=5.5e-07  Score=88.16  Aligned_cols=101  Identities=8%  Similarity=-0.118  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCC-c-cCCCCCCCCCCCCcccccchhH
Q 048319           31 VHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPP-V-LAGFVGTCSEYKPECIVKGHKI  108 (348)
Q Consensus        31 ~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p-~-~~~~~~~c~~~~~~c~~~~~~~  108 (348)
                      ...+.+.+.+.....+.++++|+++||+ |||+++.++.+++.+|.++.+.+... . ..+  ...    ....-..+..
T Consensus        55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~--~~~----~~~~~a~~~~  127 (491)
T 4gc0_A           55 SLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINP--DNT----VPVYLAGYVP  127 (491)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSS--SSS----CCGGGGGCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc--hhH----HHHHHhhhHH
Confidence            3445566777777888999999999995 99999999999999998877654220 0 000  000    0000123467


Q ss_pred             HHHHHHHHHHHhcccCCcchhHHHHHhhhc
Q 048319          109 LFYAALGLLAFASSSCSVESTEFAEEQLEI  138 (348)
Q Consensus       109 ~~~~~L~liaiG~G~~k~~v~~~~adq~~~  138 (348)
                      .++++..+.++|.|+.-+..+.+.+|..++
T Consensus       128 ~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~  157 (491)
T 4gc0_A          128 EFVIYRIIGGIGVGLASMLSPMYIAELAPA  157 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSCG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Confidence            899999999999999999999999976653

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.33  E-value=1.5e-06  Score=85.26  Aligned_cols=167  Identities=7%  Similarity=-0.005  Sum_probs=110.7

Q ss_pred             HHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHH-----HHHHHHhhhhhhhhccc
Q 048319           10 LAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLV-----FSSLAYSVGIGLLTMST   83 (348)
Q Consensus        10 ~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~-----~~~~i~~~G~~ll~~s~   83 (348)
                      ..++.. ..+..|+.+.++.+...++.+.........+...+.|+++|| +|||+...     ++.++..++.+++....
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (491)
T 4aps_A          297 AIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA-WKKNQPSSPTKFAVGLMFAGLSFLLMAIPG  375 (491)
T ss_dssp             HHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH-TTTC---CHHHHHHHHHHHHHHHTTTHHHH
T ss_pred             HHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH-HhccCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            344445 667778887788876666666666666777778888999999 58875544     78888888887776542


Q ss_pred             CCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh-
Q 048319           84 PPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP-  162 (348)
Q Consensus        84 ~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in-  162 (348)
                      ...-.+             ...+...+.++..+.++|.+..-|...++..|.++++.      +   ......++...+ 
T Consensus       376 ~~~~~~-------------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~---g~~~g~~~~~~~~  433 (491)
T 4aps_A          376 ALYGTS-------------GKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------N---SQMMSMWFLSSSV  433 (491)
T ss_dssp             HHCCCC-------------TTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------S---SSSTHHHHHHHHH
T ss_pred             HhcCCC-------------CCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------H---HHHHHHHHHHHHH
Confidence            100000             01234566778888999999999999999998887653      2   334444445444 


Q ss_pred             --hhcchhhcccc--cchhhHHHHHHHHHHHHHHHHhcCcc
Q 048319          163 --VAAIIPISYIK--PWNLRFGVSAICTVIATLLFLSGTCT  199 (348)
Q Consensus       163 --~~~~~~~~yi~--g~~~~F~i~~~~~~i~~~vf~~g~~~  199 (348)
                        .+++.+.+++.  ++...|.+.++..+++.++++...++
T Consensus       434 g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (491)
T 4aps_A          434 GSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKR  474 (491)
T ss_dssp             HHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              66776777766  78888888777777776666655443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.20  E-value=1e-05  Score=78.30  Aligned_cols=148  Identities=12%  Similarity=0.098  Sum_probs=89.2

Q ss_pred             HHHHHHhhhhhCCc---hHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCC
Q 048319           16 WTMMEYLTEVWKIS---VVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVG   92 (348)
Q Consensus        16 ~~L~~Yl~~~l~~~---~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~   92 (348)
                      ..+..|+.+.++..   ....+...........+..+++|+++|| +||++++.++..+..++.+++....         
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~l~~~~~~~~~~~~~~~~~~---------  310 (417)
T 2cfq_A          241 QQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMSVRIIGSSFAT---------  310 (417)
T ss_dssp             HHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHTTCC---------
T ss_pred             HHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHhc---------
Confidence            44455666555432   2222333333333445667899999999 5999999999988888876664421         


Q ss_pred             CCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHH-HHHh---hhcchh
Q 048319           93 TCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLL-FMVP---VAAIIP  168 (348)
Q Consensus        93 ~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y-~~in---~~~~~~  168 (348)
                                   +...+++...+.+++.+..-+...++.+|.++++.      +   .+.+.+.| .+.+   .+++.+
T Consensus       311 -------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~---g~~~g~~~~~~~~lg~~~gp~l  368 (417)
T 2cfq_A          311 -------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------S---ATIYLVCFCFFKQLAMIFMSVL  368 (417)
T ss_dssp             -------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------H---HHHHHHHHTTTHHHHHHHHTHH
T ss_pred             -------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------H---HHHHHHHHHHHHhHHHHHhhhh
Confidence                         12334444445556655555556677777665431      2   44455532 2222   566666


Q ss_pred             hcccc---cchhhHHHHHHHHHHHHHHHHh
Q 048319          169 ISYIK---PWNLRFGVSAICTVIATLLFLS  195 (348)
Q Consensus       169 ~~yi~---g~~~~F~i~~~~~~i~~~vf~~  195 (348)
                      .+++-   ||...|.+.++..+++.++.+.
T Consensus       369 ~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  398 (417)
T 2cfq_A          369 AGNMYESIGFQGAYLVLGLVALGFTLISVF  398 (417)
T ss_dssp             HHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence            66553   7888898888777777665543

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.06  E-value=3e-07  Score=89.08  Aligned_cols=67  Identities=16%  Similarity=0.056  Sum_probs=57.6

Q ss_pred             HHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhh
Q 048319            9 CLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGI   76 (348)
Q Consensus         9 r~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~   76 (348)
                      -+++..+ ..+..|+++.+|++..+++.+.+.+.....+..+++|+++|| +||||++.++..+..++.
T Consensus        20 ~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr-~Grr~~l~~~~~~~~~~~   87 (417)
T 2cfq_A           20 FFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLVMF   87 (417)
T ss_dssp             HHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTT-STTCCHHHHHHHHTTSCH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHH
Confidence            3444455 678889998899999999999999999999999999999999 599999999988876643

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.03  E-value=0.00011  Score=71.71  Aligned_cols=163  Identities=15%  Similarity=0.068  Sum_probs=96.2

Q ss_pred             HHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCC
Q 048319           19 MEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYK   98 (348)
Q Consensus        19 ~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~   98 (348)
                      ..++.+..+.+...+............+..++++++.|| +|||+.++.+.....++++.+.......            
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~Grr~~~~~~~~~~~~~~~~l~~~~~~~------------  366 (491)
T 4gc0_A          300 APEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGMFSLGTAFYTQ------------  366 (491)
T ss_dssp             HHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSHHHHHHHHHHHHHHHHHHHHHHHTT------------
T ss_pred             chHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHh-hcCcchhccchHHHHHHHHHHHHHHhcc------------
Confidence            344555678888877777677777788888999999999 5999999999999888887766542210            


Q ss_pred             CcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhcccc--
Q 048319           99 PECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYIK--  173 (348)
Q Consensus        99 ~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi~--  173 (348)
                          ...........++..+.+. +.-|....+.+|.|+.+-      |   .....+-+...+   .+++.+.+++.  
T Consensus       367 ----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~------R---~~~~g~~~~~~~~~~~i~~~~~p~l~~~  432 (491)
T 4gc0_A          367 ----APGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAI------R---GKALAIAVAAQWLANYFVSWTFPMMDKN  432 (491)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTT------H---HHHHHHHHHHHHHHHHHHHTHHHHHCHH
T ss_pred             ----cchHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhH------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                0011122222222233332 344666778888887542      3   334444443333   44444444442  


Q ss_pred             -------cchhhHHHHHHHHHHHHHHHHhcCcccccCCCCCCchhHH
Q 048319          174 -------PWNLRFGVSAICTVIATLLFLSGTCTYENKEPEGSPLTSV  213 (348)
Q Consensus       174 -------g~~~~F~i~~~~~~i~~~vf~~g~~~y~~~~p~gs~l~~~  213 (348)
                             ++...|.+-++..+++.++.++--|     +.+|.++.++
T Consensus       433 ~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~P-----ETkg~tLeei  474 (491)
T 4gc0_A          433 SWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP-----ETKGKTLEEL  474 (491)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCC-----CCTTCCHHHH
T ss_pred             HHHHhhhhhhHHHHHHHHHHHHHHHHHHheec-----CCCCCCHHHH
Confidence                   4556677766666666554443333     2335666554

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=97.70  E-value=4.2e-05  Score=71.99  Aligned_cols=150  Identities=8%  Similarity=-0.103  Sum_probs=97.1

Q ss_pred             HHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHH-Hhhhhhhhhccc
Q 048319            6 WADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLA-YSVGIGLLTMST   83 (348)
Q Consensus         6 ~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i-~~~G~~ll~~s~   83 (348)
                      ++-.++++++ ..+..|+++.+|++..+++.+.........+..++.++++||+ |+  .+..+..+ ...+..++....
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~--~~~~~~~~~~~~~~~~~~~~~  285 (375)
T 2gfp_A          209 IGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-ST--LMWQSVICCLLAGLLMWIPDW  285 (375)
T ss_dssp             HHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HH--HHHHHHHHHHHTSSSSSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHHHHhh
Confidence            4444555666 6666677777899999999988888888888888888888884 66  23333333 444444333221


Q ss_pred             CCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh-
Q 048319           84 PPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP-  162 (348)
Q Consensus        84 ~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in-  162 (348)
                      .+                  ..+...++++..+.++|.|...|...+...|.+++ +      +   .+.+..+....+ 
T Consensus       286 ~~------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~-~------~---g~~~g~~~~~~~~  337 (375)
T 2gfp_A          286 FG------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPF-L------A---GTAGALVGGLQNI  337 (375)
T ss_dssp             HH------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHHH-H------H---HHHHHHHHHHHHH
T ss_pred             hc------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCc-c------c---chHHHHHHHHHHH
Confidence            00                  01345566777888999999999999999988752 1      2   445555555555 


Q ss_pred             --hhcchhhcccc---cchhhHHHHHHHH
Q 048319          163 --VAAIIPISYIK---PWNLRFGVSAICT  186 (348)
Q Consensus       163 --~~~~~~~~yi~---g~~~~F~i~~~~~  186 (348)
                        .+++.+.+++.   +|...|.+..+.+
T Consensus       338 g~~~~~~~~g~l~~~~~~~~~~~~~~~~~  366 (375)
T 2gfp_A          338 GSGVLASLSAMLPQTGQGSLGLLMTLMGL  366 (375)
T ss_dssp             HHHCCSTTCTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence              56666665553   6777777654443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=95.82  E-value=0.0063  Score=59.72  Aligned_cols=116  Identities=14%  Similarity=0.076  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchh
Q 048319           63 WMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINE  142 (348)
Q Consensus        63 ~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~  142 (348)
                      +.+.++.++..++.+++.......-.+             ...+...+.++..+.++|.+..-|...++..|..+++.  
T Consensus       374 ~~~~~g~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~--  438 (524)
T 2xut_A          374 RKMGAGIAITGLSWIVVGTIQLMMDGG-------------SALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM--  438 (524)
T ss_dssp             HHHHTHHHHHHHHHHTTTTTTTTTTTT-------------CCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCC-------------CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH--
Confidence            567778888888887766542100000             01123556677888999999998999999998877543  


Q ss_pred             hhhhhhhhhhHHHHHHHHHh---hhcchhhcccc-----cc---------hhhHHHHHHHHHHHHHHHHhcCccc
Q 048319          143 HISLSLIQREFFKLLLFMVP---VAAIIPISYIK-----PW---------NLRFGVSAICTVIATLLFLSGTCTY  200 (348)
Q Consensus       143 e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi~-----g~---------~~~F~i~~~~~~i~~~vf~~g~~~y  200 (348)
                          +   .+...+++...+   .+++.+.+++.     +|         ...|.+.++..+++.++++...+++
T Consensus       439 ----~---g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (524)
T 2xut_A          439 ----K---GTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSY  506 (524)
T ss_dssp             ----C---TTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             ----H---hHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence                2   334444444433   66666666554     34         2337777777777666665544444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	348
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.93
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.88
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.35
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.23

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.93  E-value=1.5e-09  Score=101.82  Aligned_cols=149  Identities=9%  Similarity=-0.015  Sum_probs=112.0

Q ss_pred             HHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCC
Q 048319           17 TMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSE   96 (348)
Q Consensus        17 ~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~   96 (348)
                      .+..++. ++|++.++.+.+.+.+.....+..+++|+++|| +||||++.++.++..++.++......  .         
T Consensus        46 ~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~~--~---------  112 (447)
T d1pw4a_          46 LAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAAVMLFMGFVPW--A---------  112 (447)
T ss_dssp             HHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHCHH--H---------
T ss_pred             HHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHhhccccch--h---------
Confidence            3445565 489999999999999999999999999999999 59999999999999999888765421  0         


Q ss_pred             CCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh---hhcchhhccc-
Q 048319           97 YKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP---VAAIIPISYI-  172 (348)
Q Consensus        97 ~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in---~~~~~~~~yi-  172 (348)
                             ......++++..+.++|.|..-|...++.+|.+++++      |   ...+.++..+.+   .+++....++ 
T Consensus       113 -------~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------r---~~~~~~~~~~~~~g~~i~~~~~~~~~  176 (447)
T d1pw4a_         113 -------TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------R---GGIVSVWNCAHNVGGGIPPLLFLLGM  176 (447)
T ss_dssp             -------HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------H---HHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             -------hhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------c---cccccccccccchhhhhhhhhhhhHh
Confidence                   0124567788889999999999999999998876432      3   456666666666   4554444432 


Q ss_pred             ---ccchhhHHHHHHHHHHHHHHHH
Q 048319          173 ---KPWNLRFGVSAICTVIATLLFL  194 (348)
Q Consensus       173 ---~g~~~~F~i~~~~~~i~~~vf~  194 (348)
                         .+|++.|.+.++..++..++.+
T Consensus       177 ~~~~~w~~~~~~~~~~~~~~~~~~~  201 (447)
T d1pw4a_         177 AWFNDWHAALYMPAFCAILVALFAF  201 (447)
T ss_dssp             HHTCCSTTCTHHHHHHHHHHHHHHH
T ss_pred             hhhhcccccchhhhhhHHHHHHHHH
Confidence               2899999987766665544443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=1.2e-08  Score=92.94  Aligned_cols=79  Identities=14%  Similarity=0.044  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhc
Q 048319            3 ALLWADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTM   81 (348)
Q Consensus         3 ~~e~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~   81 (348)
                      +..+...+++... ..+..|+++.+|.+.++.+.+.+.+.....+..+++|+++||+ ||||+++++..+..++..++.+
T Consensus        14 ~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~~~~~~~~   92 (417)
T d1pv7a_          14 LFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVMFAPFFI   92 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHH
Confidence            3445566666655 7788899999999999999999999999999999999999995 9999999999999888877766


Q ss_pred             c
Q 048319           82 S   82 (348)
Q Consensus        82 s   82 (348)
                      .
T Consensus        93 ~   93 (417)
T d1pv7a_          93 F   93 (417)
T ss_dssp             H
T ss_pred             h
Confidence            4

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.35  E-value=4e-06  Score=77.72  Aligned_cols=161  Identities=14%  Similarity=0.039  Sum_probs=106.7

Q ss_pred             HHHHHHHHHhH-HHHHHHhhhhhCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHH-hhhhhhhhcc
Q 048319            5 LWADCLAQFVM-WTMMEYLTEVWKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAY-SVGIGLLTMS   82 (348)
Q Consensus         5 e~~Er~a~yg~-~~L~~Yl~~~l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~-~~G~~ll~~s   82 (348)
                      .++--..++++ ..+..|+.+.+|++..+++.....+.....+..+++|+++|++ +|++......... .++..++...
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  336 (447)
T d1pw4a_         258 NVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMTLVTIATIVYW  336 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhHHHHHHHHHHHH
Confidence            44555666777 7788899999999999999999999999999999999999995 6654333322222 2222222221


Q ss_pred             cCCccCCCCCCCCCCCCcccccchhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh
Q 048319           83 TPPVLAGFVGTCSEYKPECIVKGHKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP  162 (348)
Q Consensus        83 ~~p~~~~~~~~c~~~~~~c~~~~~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in  162 (348)
                      ..+                  ..+.....+.+.+++++.++.-+....+..|.++++.      +   .....+.+...+
T Consensus       337 ~~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~---g~~~g~~~~~~~  389 (447)
T d1pw4a_         337 MNP------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------A---GTAAGFTGLFGY  389 (447)
T ss_dssp             SCC------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------H---HHHHHHHHHHHH
T ss_pred             hcc------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------H---HHHHHHHHHHHH
Confidence            111                  1134566667778888888888888888887776432      3   445555555444


Q ss_pred             ----hhcchhhcccc---cchhhHHHHHHHHHHHHHHH
Q 048319          163 ----VAAIIPISYIK---PWNLRFGVSAICTVIATLLF  193 (348)
Q Consensus       163 ----~~~~~~~~yi~---g~~~~F~i~~~~~~i~~~vf  193 (348)
                          ++++.+.+++.   ||...|.+.+++.+++.+++
T Consensus       390 ~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  427 (447)
T d1pw4a_         390 LGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL  427 (447)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence                44555556653   89999887776666655544

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.23  E-value=3.5e-06  Score=76.05  Aligned_cols=138  Identities=12%  Similarity=0.050  Sum_probs=101.6

Q ss_pred             hCCchHHHHHHHHHHHHHHHHHhhhHHHHHhhhccchHHHHHHHHHHhhhhhhhhcccCCccCCCCCCCCCCCCcccccc
Q 048319           26 WKISVVHAAGIVNIFSGLVLVLQLPMQYLVDTIISKYWMLVFSSLAYSVGIGLLTMSTPPVLAGFVGTCSEYKPECIVKG  105 (348)
Q Consensus        26 l~~~~~~A~~i~~~~~~~~~~~pl~gg~lAD~~lGr~~ti~~~~~i~~~G~~ll~~s~~p~~~~~~~~c~~~~~~c~~~~  105 (348)
                      .+.+................+...+.+++.|| .||++++.++..+..++.+++....                      
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~----------------------  310 (417)
T d1pv7a_         254 GEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMSVRIIGSSFAT----------------------  310 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHTCC----------------------
T ss_pred             cccchhhhcccccccccccccchhhhhhhhcc-cccccchhhhHHHHHHhhhcccccc----------------------
Confidence            34455566666677777778888899999999 5999999999999999888777641                      


Q ss_pred             hhHHHHHHHHHHHHhcccCCcchhHHHHHhhhccchhhhhhhhhhhhHHHHHHHHHh----hhcchhhcccc---cchhh
Q 048319          106 HKILFYAALGLLAFASSSCSVESTEFAEEQLEIAINEHISLSLIQREFFKLLLFMVP----VAAIIPISYIK---PWNLR  178 (348)
Q Consensus       106 ~~~~~~~~L~liaiG~G~~k~~v~~~~adq~~~~~~~e~~~~~~~~~~f~~~y~~in----~~~~~~~~yi~---g~~~~  178 (348)
                      +...+++...+.+++.|...|...++..|.++++.      +   .+.+..++...+    .+++.+.+++.   ||+..
T Consensus       311 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~  381 (417)
T d1pv7a_         311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------S---ATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGA  381 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------H---HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
Confidence            24566777788899999999999999998887543      3   445555443322    56666666654   99999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 048319          179 FGVSAICTVIATLLFLS  195 (348)
Q Consensus       179 F~i~~~~~~i~~~vf~~  195 (348)
                      |.+.++..+++.++.++
T Consensus       382 ~~~~~~~~~~~~~~~~~  398 (417)
T d1pv7a_         382 YLVLGLVALGFTLISVF  398 (417)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99888777766665544